BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] (805 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] gi|254040668|gb|ACT57464.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 1670 bits (4324), Expect = 0.0, Method: Compositional matrix adjust. Identities = 805/805 (100%), Positives = 805/805 (100%) Query: 1 MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60 MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA Sbjct: 1 MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60 Query: 61 AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120 AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG Sbjct: 61 AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120 Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG Sbjct: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR Sbjct: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG Sbjct: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI Sbjct: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ Sbjct: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI Sbjct: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC Sbjct: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE Sbjct: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD Sbjct: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI Sbjct: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF Sbjct: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805 EEAARIRDEIKRLKSSPYFQGLDDS Sbjct: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805 >gi|315122486|ref|YP_004062975.1| excinuclease ABC subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495888|gb|ADR52487.1| excinuclease ABC subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 817 Score = 1351 bits (3497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/805 (81%), Positives = 723/805 (89%), Gaps = 12/805 (1%) Query: 13 SRIQSI-STRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRM----LIH 67 S I+S S+ DD DY SFE+KQ DK +VA+ MR+IRSEAGKHRKN AKR+ +H Sbjct: 13 SHIESTRSSFTDDQDYLSFEKKQFYADKEIVANTMRQIRSEAGKHRKNVAKRINKEKSLH 72 Query: 68 QRENTASKGEFQSQSSISMSEKQT-------REISEQTMTPSVQALARLIQSDNPLLKNG 120 + +SK QS+ + +K+T +EI+E MTPSVQALARLIQSDNPL KNG Sbjct: 73 NSDPKSSKIALQSKKPTTQDKKRTALNNIPKKEIAENAMTPSVQALARLIQSDNPLFKNG 132 Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 KIWTPHRS SI+NH K I+ FQM TDY PSGDQP+AI+Q+++ IH+ EK+QLLLGVTGSG Sbjct: 133 KIWTPHRSLSIHNHPKKISPFQMHTDYQPSGDQPSAISQIVESIHAEEKIQLLLGVTGSG 192 Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP+NAVEYFVSYYDYYQPEAYVPR Sbjct: 193 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPNNAVEYFVSYYDYYQPEAYVPR 252 Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI+++KIG Sbjct: 253 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMILKIKIG 312 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 D +EQKELLSSLVKQQYKRQD+GI+RG+FRVCGDSIEIFPSHLE+ AWR+SMFGNDIEEI Sbjct: 313 DQIEQKELLSSLVKQQYKRQDMGIVRGSFRVCGDSIEIFPSHLENTAWRISMFGNDIEEI 372 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 +EF PLTGQK RN+E IKIYANSHYVTPRPTLN AMK IKEEL +RLIELEKEGRLLE+Q Sbjct: 373 AEFDPLTGQKNRNLEEIKIYANSHYVTPRPTLNAAMKCIKEELNVRLIELEKEGRLLESQ 432 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RL QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI E++LLFVDESHVTI Sbjct: 433 RLAQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYISENALLFVDESHVTI 492 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQISGMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+CLRPTTIVVSATPG+WELE+C Sbjct: 493 PQISGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDCLRPTTIVVSATPGAWELEKC 552 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 QG+IVEQIIRPTGLVDPPVEIRSARTQVED+ +EINL Q GLRILLTVLTKRMAEDLTE Sbjct: 553 QGMIVEQIIRPTGLVDPPVEIRSARTQVEDIKEEINLTIQNGLRILLTVLTKRMAEDLTE 612 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YLYE NIRVRYMHSEV TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD Sbjct: 613 YLYEHNIRVRYMHSEVHTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 672 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS+TSLIQTIGRAARNV+SKVILYADT+TKSI+LAIDETTRRREKQ E+N+K+NI Sbjct: 673 KEGFLRSRTSLIQTIGRAARNVDSKVILYADTMTKSIKLAIDETTRRREKQQEYNRKNNI 732 Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 P+SVKEKI+EVIDPIL E+ + + I+I+ +QL SKK+ + HLKSLRKQM +AADN+NF Sbjct: 733 KPESVKEKIIEVIDPILQENNSKSEITINTEQLPQSKKERELHLKSLRKQMLIAADNMNF 792 Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805 EEAARIRDEIKRLK++ + LD S Sbjct: 793 EEAARIRDEIKRLKNAFSYDTLDSS 817 >gi|327192675|gb|EGE59613.1| excinuclease ABC protein, B subunit [Rhizobium etli CNPAF512] Length = 1013 Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/794 (64%), Positives = 629/794 (79%), Gaps = 31/794 (3%) Query: 33 KQLEVDKTMVA-DAMRRIRSEAGKHRK---NAAKR----MLIHQREN------------- 71 KQLE D ++ R I S+AGKHRK NAA++ + ++++ Sbjct: 36 KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95 Query: 72 ----TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127 T + + + +S + IS +T +V+AL++LI+S NPL KNGKIWTPHR Sbjct: 96 SDPKTRAAAGLNPVAGLDISLEDAGNISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155 Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187 + I M++DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAK Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214 Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274 Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++ Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 LL+ LV QQYKR+D+ RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLT Sbjct: 335 LLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLT 394 Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427 GQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR Sbjct: 395 GQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTR 454 Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487 YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMY Sbjct: 455 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMY 514 Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547 RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ G+ EQ Sbjct: 515 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 574 Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 +IRPTGL+DPPVE+RSARTQV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ + Sbjct: 575 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 634 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS Sbjct: 635 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 694 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727 +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK Sbjct: 695 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKA 754 Query: 728 KIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEE 782 KI +++D + D +IS + + + L +AHL +L K M AA +L+FE+ Sbjct: 755 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 814 Query: 783 AARIRDEIKRLKSS 796 AAR+RDEIKRLK++ Sbjct: 815 AARLRDEIKRLKAA 828 >gi|190892262|ref|YP_001978804.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652] gi|190697541|gb|ACE91626.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652] Length = 1013 Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/794 (64%), Positives = 630/794 (79%), Gaps = 31/794 (3%) Query: 33 KQLEVDKTMVA-DAMRRIRSEAGKHRK---NAAKR----MLIHQREN------------- 71 KQLE D ++ R I S+AGKHRK NAA++ + ++++ Sbjct: 36 KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95 Query: 72 ----TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127 T + + + +S + +IS +T +V+AL++LI+S NPL KNGKIWTPHR Sbjct: 96 SDPKTRAAAGLNPVAGLDISLEDAGKISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155 Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187 + I M++DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAK Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214 Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274 Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++ Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 LL+ LV QQYKR+D+ RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLT Sbjct: 335 LLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLT 394 Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427 GQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR Sbjct: 395 GQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTR 454 Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487 YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMY Sbjct: 455 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMY 514 Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547 RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ G+ EQ Sbjct: 515 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 574 Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 +IRPTGL+DPPVE+RSARTQV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ + Sbjct: 575 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 634 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS Sbjct: 635 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 694 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727 +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK Sbjct: 695 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKA 754 Query: 728 KIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEE 782 KI +++D + D +IS + + + L +AHL +L K M AA +L+FE+ Sbjct: 755 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 814 Query: 783 AARIRDEIKRLKSS 796 AAR+RDEIKRLK++ Sbjct: 815 AARLRDEIKRLKAA 828 >gi|15965654|ref|NP_386007.1| excinuclease ABC subunit B [Sinorhizobium meliloti 1021] gi|307314058|ref|ZP_07593671.1| excinuclease ABC, B subunit [Sinorhizobium meliloti BL225C] gi|307321235|ref|ZP_07600637.1| excinuclease ABC, B subunit [Sinorhizobium meliloti AK83] gi|15074835|emb|CAC46480.1| Probable excinuclease ABC subunit B [Sinorhizobium meliloti 1021] gi|306893137|gb|EFN23921.1| excinuclease ABC, B subunit [Sinorhizobium meliloti AK83] gi|306899180|gb|EFN29819.1| excinuclease ABC, B subunit [Sinorhizobium meliloti BL225C] Length = 985 Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/780 (65%), Positives = 622/780 (79%), Gaps = 17/780 (2%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRK----NAAKR-----MLIHQRENTASKGEFQSQS 82 KQLE + + ++ R + S+AG+HRK +A+K M T + + Sbjct: 40 KQLESEAEASTFESRREVASKAGRHRKKVEISASKSARGTSMGGTTDPKTRAAAGLNPVA 99 Query: 83 SISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141 + ++ E + S +T +V+ALA+LI+S NPL K+GK+WTPHR I Sbjct: 100 GLDVALEDADKLTSGSGVTATVEALAKLIESGNPLFKDGKLWTPHRPARPEKSEGGIAI- 158 Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 +MQ+DY P+GDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP Sbjct: 159 RMQSDYEPAGDQPTAIADLVDGLTSGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 218 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS Sbjct: 219 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 278 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 ATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV QQYKR+D Sbjct: 279 ATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 338 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 + RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK +++++KIYA Sbjct: 339 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYA 398 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A+K IKEE+ RL ELE+ GRLLEAQRLEQR YD+EMLE TGSCQ Sbjct: 399 NSHYVTPRPTLNAAIKAIKEEMSQRLAELERAGRLLEAQRLEQRTRYDIEMLEATGSCQG 458 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVTIPQI GMYRGDF RKATLAEYG Sbjct: 459 IENYSRYLTGRRPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYG 518 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ G+ EQ+IRPTGL+DPPVE+ Sbjct: 519 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPPVEV 578 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 RSA+TQV+DV EI A G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER Sbjct: 579 RSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 638 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 639 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 698 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 V+ KVILYADTIT S+Q A++ET+RRREKQ+ +N +H I P+SVK KI +++D + D Sbjct: 699 VDGKVILYADTITGSMQRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 758 Query: 742 ATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A + L +AHL +L KQM AA +L+FE+AAR+RDEIKRLK++ Sbjct: 759 VRADISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKAA 818 >gi|241205212|ref|YP_002976308.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859102|gb|ACS56769.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 997 Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/794 (64%), Positives = 627/794 (78%), Gaps = 36/794 (4%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS---- 87 KQLE D +T + R+I S+AGKHRK ++ I R T+ G S+S+ S Sbjct: 36 KQLEADAETSGVETQRQIASKAGKHRK----KVEIAARTKTSDGGVSASKSARGTSMGGS 91 Query: 88 -EKQTREISE--------------------QTMTPSVQALARLIQSDNPLLKNGKIWTPH 126 + +TR + +T +V+AL+ LI+S NPL KNGKIWTPH Sbjct: 92 TDPKTRAAAGLNPVSGMDTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPH 151 Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186 R + I +MQ+DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMA Sbjct: 152 RPARPDKSEGGIAI-RMQSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMA 210 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246 KVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIE Sbjct: 211 KVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIE 270 Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 KESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q+ Sbjct: 271 KESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQR 330 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366 +LL+ LV QQYKR+D+ RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PL Sbjct: 331 QLLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPL 390 Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426 TGQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR Sbjct: 391 TGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRT 450 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486 YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GM Sbjct: 451 RYDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGM 510 Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546 YRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ G+ E Sbjct: 511 YRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAE 570 Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606 Q+IRPTGL+DPPVE+RSAR+QV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ Sbjct: 571 QVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQG 630 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 +RVRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLR Sbjct: 631 VRVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLR 690 Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726 S+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N++H I P+SVK Sbjct: 691 SETSLIQTIGRAARNVDGKVILYADQITGSMKRAMEETSRRREKQMVYNQEHGITPESVK 750 Query: 727 EKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 +I +++D + D +IS A +L + HL +L K M AA +L+FE Sbjct: 751 ARINDILDSVYERDHVRADISGTSGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFE 810 Query: 782 EAARIRDEIKRLKS 795 +AAR+RDEIKRLK+ Sbjct: 811 KAARLRDEIKRLKA 824 >gi|116252704|ref|YP_768542.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. viciae 3841] gi|115257352|emb|CAK08447.1| putative UVRABC system protein B (UvrB protein) (excinuclease ABC subunit B) [Rhizobium leguminosarum bv. viciae 3841] Length = 1009 Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/795 (64%), Positives = 627/795 (78%), Gaps = 36/795 (4%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS---- 87 KQLE D +T + R+I S+AGKHRK ++ I R T+ G S+S+ S Sbjct: 36 KQLEADAETSGVETQRQIASKAGKHRK----KVEIAARTKTSDGGVSASKSARGTSMGGS 91 Query: 88 -EKQTREISE--------------------QTMTPSVQALARLIQSDNPLLKNGKIWTPH 126 + +TR + +T +V+AL+ LI+S NPL KNGKIWTPH Sbjct: 92 TDPKTRAAAGLNPVSGMDTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPH 151 Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186 R + I +MQ+DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMA Sbjct: 152 RPARPDKSEGGIAI-RMQSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMA 210 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246 KVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIE Sbjct: 211 KVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIE 270 Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 KESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q+ Sbjct: 271 KESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQR 330 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366 +LL+ LV QQYKR+D+ RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PL Sbjct: 331 QLLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPL 390 Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426 TGQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR Sbjct: 391 TGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRT 450 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486 YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GM Sbjct: 451 RYDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGM 510 Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546 YRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ G+ E Sbjct: 511 YRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAE 570 Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606 Q+IRPTGL+DPPVE+RSAR+QV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ Sbjct: 571 QVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQG 630 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 +RVRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLR Sbjct: 631 VRVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLR 690 Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726 S+TSLIQTIGRAARNV+ KVILYAD +T S++ A++ET RRREKQ+ +N++H I P+SVK Sbjct: 691 SETSLIQTIGRAARNVDGKVILYADQVTGSMKRAMEETGRRREKQMVYNQEHGITPESVK 750 Query: 727 EKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 +I +++D + D +IS A +L + HL +L K M AA +L+FE Sbjct: 751 ARISDILDSVYERDHVRADISGASGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFE 810 Query: 782 EAARIRDEIKRLKSS 796 +AAR+RDEIKRLK++ Sbjct: 811 KAARLRDEIKRLKAA 825 >gi|15889291|ref|NP_354972.1| excinuclease ABC subunit B [Agrobacterium tumefaciens str. C58] gi|15157125|gb|AAK87757.1| excinuclease ABC subunit B [Agrobacterium tumefaciens str. C58] Length = 988 Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/796 (64%), Positives = 625/796 (78%), Gaps = 33/796 (4%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRKN--------AAKRMLIHQRENTASK-------- 75 KQLE + + + R I S+AGKHRK A K + TASK Sbjct: 37 KQLEAEAEAGSVETQREIASKAGKHRKKIEIEARKEAEKAANKTAKNTTASKTARGVSIG 96 Query: 76 ----------GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125 + + +S ++ ++ +T +V+AL+ LI+S NPL K+GK+WTP Sbjct: 97 ASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTP 156 Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 HR +T +M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTM Sbjct: 157 HRPARPPKSEGGVTI-RMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTM 215 Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 AKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+I Sbjct: 216 AKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 275 Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 EKESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+++GD ++Q Sbjct: 276 EKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQ 335 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 ++LL+ LV QQYKR+D+ RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF P Sbjct: 336 RQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDP 395 Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 LTGQK +++++KIYANSHYVTPRPTLN A+K IKEELK+RL ELEK GRLLEAQRLEQR Sbjct: 396 LTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQR 455 Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 YD+EMLE TGSC IENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI G Sbjct: 456 TRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGG 515 Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATPGSWE+EQ G+ Sbjct: 516 MYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFA 575 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQ+IRPTGL+DPPVE+RSAR+QV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ Sbjct: 576 EQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQ 635 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFL Sbjct: 636 GVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFL 695 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N +H I P+SV Sbjct: 696 RSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESV 755 Query: 726 KEKIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNF 780 K KI +++D + D +IS + + + L +AHL +L K M AA +L+F Sbjct: 756 KAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQAHLNALEKSMRDAAADLDF 815 Query: 781 EEAARIRDEIKRLKSS 796 E+AAR+RDEIKRLK++ Sbjct: 816 EKAARLRDEIKRLKAA 831 >gi|86358172|ref|YP_470064.1| excinuclease ABC subunit B [Rhizobium etli CFN 42] gi|86282274|gb|ABC91337.1| excinuclease ABC subunit B protein [Rhizobium etli CFN 42] Length = 961 Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/793 (64%), Positives = 624/793 (78%), Gaps = 31/793 (3%) Query: 33 KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS---- 87 KQLE + ++ R I S+AGKHRK H + +K S+++ +S Sbjct: 2 KQLEAEAEASGVESQREIASKAGKHRKRVENEARKHSEAVSVNKKATVSKTARGVSIGGS 61 Query: 88 -EKQTR-------------------EISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127 + +TR IS +T +V+AL++LI+S NPL KNGKIWTPHR Sbjct: 62 SDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 121 Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187 + IT +M ++Y P+GDQP AI L++G+ S E+ Q+LLGVTGSGKTFTMAK Sbjct: 122 PARPDKSEGGITI-RMDSEYKPAGDQPTAIRDLVEGLQSGERSQVLLGVTGSGKTFTMAK 180 Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 VIE QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK Sbjct: 181 VIEETQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 240 Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++ Sbjct: 241 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQ 300 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 LL+ LV QQYKR+DI RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLT Sbjct: 301 LLADLVAQQYKRRDIDFTRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLT 360 Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427 GQK +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR Sbjct: 361 GQKTGDLKSVKIYANSHYVTPRPTLNGAIKAIKEELRLRLAELEKAGRLLEAQRLEQRTR 420 Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487 YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++++F+DESHVT+PQI GMY Sbjct: 421 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNAIVFIDESHVTVPQIGGMY 480 Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547 RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ G+ EQ Sbjct: 481 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 540 Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 +IRPTGL+DPPVE+RSARTQV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ + Sbjct: 541 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 600 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS Sbjct: 601 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 660 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727 +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK Sbjct: 661 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARRREKQMAYNLENGITPESVKA 720 Query: 728 KIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEE 782 KI +++D + D +IS + + + L +AHL +L K M AA +L+FE+ Sbjct: 721 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 780 Query: 783 AARIRDEIKRLKS 795 AAR+RDEIKRLK+ Sbjct: 781 AARLRDEIKRLKA 793 >gi|227822296|ref|YP_002826267.1| excinuclease ABC subunit B [Sinorhizobium fredii NGR234] gi|227341296|gb|ACP25514.1| UvrABC system protein B [Sinorhizobium fredii NGR234] Length = 994 Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/789 (65%), Positives = 617/789 (78%), Gaps = 26/789 (3%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRKN--------AAKRMLIHQRENTASKGEFQSQSS 83 KQLE + +T ++ R I S+AGKHRK AAK + T+ G ++ Sbjct: 40 KQLEAEAETSAFESQREIASKAGKHRKKVEITASKAAAKTVAGKTARGTSMGGSHDPKTR 99 Query: 84 ISMS-----------EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN 132 + E + + +T +V+ALA LI+S NPL K+GK+WTPHR + Sbjct: 100 AAAGLNPVAGLDVSLEDADKLTTGSGVTATVEALAALIESGNPLFKDGKLWTPHRPARPD 159 Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 I+ +M TDY PSGDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA Sbjct: 160 KSEGGISL-KMVTDYQPSGDQPTAIADLVDGLSSGERNQVLLGVTGSGKTFTMAKVIEAT 218 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSIN Sbjct: 219 QRPAVILAPNKTLAAQLYSEFKNFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSIN 278 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 EQIDRMRHSATRSLLER+D ++V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ L Sbjct: 279 EQIDRMRHSATRSLLERDDVVIVASVSCIYGIGSVETYTAMTFQMTVGDRLDQRQLLADL 338 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V QQYKR+D+ RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK Sbjct: 339 VAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTG 398 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 +++++KIYANSHYVTPRPTLN A K IK+EL RL ELE+ GRLLEAQRLEQR YDLEM Sbjct: 399 DLKSVKIYANSHYVTPRPTLNAATKAIKDELAHRLTELERAGRLLEAQRLEQRTRYDLEM 458 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 LE TGSCQ IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVTIPQI GMYRGDF Sbjct: 459 LEATGSCQGIENYSRYLTGRKPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFR 518 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ G+ EQ+IRPT Sbjct: 519 RKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIRPT 578 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DPPVE+RSA+TQV+DV EI A G R L+TVLTKRMAEDLTEYL+E+ +RVRYM Sbjct: 579 GLIDPPVEVRSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYM 638 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLI Sbjct: 639 HSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLI 698 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARNV+ KVILYADTIT S+ A++ET RRREKQ+ +N ++ I P+SVK KI ++ Sbjct: 699 QTIGRAARNVDGKVILYADTITGSMSRAMEETARRREKQMAYNLENGITPESVKAKISDI 758 Query: 733 IDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 +D + D +IS A+ L +AHL +L KQM AA +L+FE AAR+R Sbjct: 759 LDSVYERDHVRADISGVAGKGFAEAGHLVGNNLQAHLNALEKQMRDAAADLDFETAARLR 818 Query: 788 DEIKRLKSS 796 DEIKRLK++ Sbjct: 819 DEIKRLKAA 827 >gi|150396826|ref|YP_001327293.1| excinuclease ABC subunit B [Sinorhizobium medicae WSM419] gi|150028341|gb|ABR60458.1| excinuclease ABC, B subunit [Sinorhizobium medicae WSM419] Length = 978 Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/780 (65%), Positives = 622/780 (79%), Gaps = 17/780 (2%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRK----NAAKR-----MLIHQRENTASKGEFQSQS 82 KQLE + + ++ R + S+AG+HRK +A+K M T + + Sbjct: 40 KQLESEAEASTFESRREVASKAGRHRKKVEISASKSARGTSMGGTTDPKTRAAAGLNPVA 99 Query: 83 SISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141 + +S E + S +T +V+ALA+LI+S NPL K+GK+WTPHR + I Sbjct: 100 GLDVSLEDADKLTSGSGVTATVEALAKLIESGNPLFKDGKLWTPHRPARPDKSEGGIAI- 158 Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 +MQ+DY P+GDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP Sbjct: 159 RMQSDYEPAGDQPTAIADLVGGLASGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 218 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS Sbjct: 219 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 278 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 ATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV QQYKR++ Sbjct: 279 ATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRE 338 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 + RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK +++++KIYA Sbjct: 339 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYA 398 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A+K IKEEL RL+ELE+ GRLLEAQRLEQR YD+EMLE TGSCQ Sbjct: 399 NSHYVTPRPTLNAAIKAIKEELSHRLVELERAGRLLEAQRLEQRTRYDIEMLEATGSCQG 458 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGR PGEPPPTLFEYIP+D+L+F+DESHVTIPQI GMYRGDF RKATLAEYG Sbjct: 459 IENYSRYLTGRRPGEPPPTLFEYIPDDALIFIDESHVTIPQIGGMYRGDFRRKATLAEYG 518 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ G+ EQ+IRPTGL+DP VE+ Sbjct: 519 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPAVEV 578 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 RSA+TQV+DV EI A G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER Sbjct: 579 RSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 638 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 639 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 698 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 V+ KVILYADTIT S++ A++ET RRREKQ+ +N +H I P+SVK KI +++D + D Sbjct: 699 VDGKVILYADTITGSMKRAMEETGRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 758 Query: 742 ATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A + L +AHL +L KQM AA +L+FE+AAR+RDEIKRLK++ Sbjct: 759 VRADISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKAA 818 >gi|325293370|ref|YP_004279234.1| excinuclease ABC subunit B [Agrobacterium sp. H13-3] gi|325061223|gb|ADY64914.1| excinuclease ABC subunit B [Agrobacterium sp. H13-3] Length = 1043 Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/796 (63%), Positives = 627/796 (78%), Gaps = 33/796 (4%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRKN-------AAKRMLIHQRENTASKGEFQSQSSI 84 KQLE + + + R + S+AGKHRK A++ +NT + + S Sbjct: 87 KQLEAEAEAGSVETQREVASKAGKHRKKIEIEARKEAEKATNKTAKNTTASKTARGVSIG 146 Query: 85 SMSEKQTR-------------------EISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125 + S+ +TR ++ +T +V+AL+ LI+S NPL K+GK+WTP Sbjct: 147 ASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTP 206 Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 HR +T +M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTM Sbjct: 207 HRPARPPKSEGGVTI-RMNSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTM 265 Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 AKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+I Sbjct: 266 AKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 325 Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 EKESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+++GD ++Q Sbjct: 326 EKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQ 385 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 ++LL+ LV QQYKR+D+ RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF P Sbjct: 386 RQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDP 445 Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 LTGQK +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR Sbjct: 446 LTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELRVRLAELEKAGRLLEAQRLEQR 505 Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 YD+EMLE TGSC IENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI G Sbjct: 506 TRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGG 565 Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATPGSWE+EQ G+ Sbjct: 566 MYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQAGGVFA 625 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQ+IRPTGL+DPPVE+RSAR+QV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ Sbjct: 626 EQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQ 685 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFL Sbjct: 686 GVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFL 745 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N +H I P+SV Sbjct: 746 RSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESV 805 Query: 726 KEKIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNF 780 K KI +++D + D +IS + + + L ++HL +L K M AA +L+F Sbjct: 806 KAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQSHLNALEKSMRDAAADLDF 865 Query: 781 EEAARIRDEIKRLKSS 796 E+AAR+RDEIKRLK++ Sbjct: 866 EKAARLRDEIKRLKAT 881 >gi|209549788|ref|YP_002281705.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535544|gb|ACI55479.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 990 Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/780 (64%), Positives = 622/780 (79%), Gaps = 17/780 (2%) Query: 33 KQLEVDKTMVA-DAMRRIRSEAGKHRKN---AAKR------MLIHQRENTASKGEFQSQS 82 KQLE D + R+I S+AGKHRK AA + M T + + Sbjct: 36 KQLEADAEASGVETQRQIASKAGKHRKKVEIAASKSARGTSMGGSTDPKTRAAAGLNPVA 95 Query: 83 SISMSEKQTREISEQT-MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141 ++ + ++ + T +T +V+AL+ LI+S NPL KNGKIWTPHR + I Sbjct: 96 GMNTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPHRPARPDKSEGGIRIL 155 Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 M++DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP Sbjct: 156 -MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 214 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS Sbjct: 215 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 274 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 ATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV QQYKR+D Sbjct: 275 ATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 334 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 + RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLTGQK+ +++++KIYA Sbjct: 335 MDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKVGDLKSVKIYA 394 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR YD+EMLE TGSCQ Sbjct: 395 NSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCQG 454 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYG Sbjct: 455 IENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYG 514 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ G+ EQ+IRPTGL+DPPVE+ Sbjct: 515 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEV 574 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 RSARTQV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER Sbjct: 575 RSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 634 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 635 IEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 694 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 V+ KVILYAD +T S++ A++ET RRREKQ+ +N++H I P+SVK +I +++D + D Sbjct: 695 VDGKVILYADQVTGSMKRAMEETGRRREKQMIYNQEHGITPESVKARISDILDSVYERDH 754 Query: 742 ATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS + + + L + HL +L K M AA +L+FE+AAR+RDEIKRLK++ Sbjct: 755 VRADISGVSGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAA 814 >gi|222086269|ref|YP_002544801.1| excinuclease ABC, B subunit [Agrobacterium radiobacter K84] gi|221723717|gb|ACM26873.1| excinuclease ABC, B subunit [Agrobacterium radiobacter K84] Length = 944 Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/779 (64%), Positives = 622/779 (79%), Gaps = 17/779 (2%) Query: 33 KQLEVD-KTMVADAMRRIRSEAGKHRKN---AAKR------MLIHQRENTASKGEFQSQS 82 KQLE + +T + R+I S+AGKHRK AA + M T + S Sbjct: 36 KQLESEAETSGIETQRQIASKAGKHRKKVEIAASKSGRGTSMGGSTDPKTRAAAGLNPVS 95 Query: 83 SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 + S + + +T +V+AL+ LI+S NPL K+GK+WTPHR N I + Sbjct: 96 GMDTSLENAADAG-TAVTATVEALSALIESGNPLFKDGKLWTPHRPARPNKSEGGIPI-R 153 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M +DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APN Sbjct: 154 MVSDYEPAGDQPTAIRDLVEGLDNGDRSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPN 213 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSA Sbjct: 214 KTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSA 273 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV QQYKR+D+ Sbjct: 274 TRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQLLADLVAQQYKRRDM 333 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 IRG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK +++++KIYAN Sbjct: 334 DFIRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTGDLKSVKIYAN 393 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+++IKEELK+RL ELEK GRLLEAQRLEQR YD+EMLE TGSC I Sbjct: 394 SHYVTPRPTLNGAIRHIKEELKIRLAELEKAGRLLEAQRLEQRTRYDVEMLEATGSCAGI 453 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI GMYRGDF RKATLAEYGF Sbjct: 454 ENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGF 513 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE++Q G+ EQ+IRPTGL+DPPVE+R Sbjct: 514 RLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMDQSGGVFAEQVIRPTGLIDPPVEVR 573 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 SAR+QV+DV EI A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 574 SARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 633 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 634 EIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNV 693 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD IT S++ A++ET+RRREKQ+ +N ++ I P+SVK +I +++D + +D Sbjct: 694 DGKVILYADNITGSMKRAMEETSRRREKQMVYNTENGITPESVKARISDILDSVYEKDHV 753 Query: 743 TTNI-SIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +I + + + L +AHL +L K M AA +L+FE+AAR+RDEIKRLK++ Sbjct: 754 RADIGGVSGKGFADGGHLVGNNLQAHLNALEKAMRDAAADLDFEKAARLRDEIKRLKAA 812 >gi|222148547|ref|YP_002549504.1| excinuclease ABC subunit B [Agrobacterium vitis S4] gi|221735533|gb|ACM36496.1| excinuclease ABC B subunit [Agrobacterium vitis S4] Length = 1001 Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/768 (64%), Positives = 610/768 (79%), Gaps = 13/768 (1%) Query: 39 KTMVADAMR-----RIRSEAGKHRKNAAKRMLIHQRENTASKGE--FQSQSSISMSEKQT 91 KT AD ++ + +SE G ++ + I + A++ S + S ++ Sbjct: 99 KTEAADPVKAGRTAKAKSEDGGSAMRTSRGVSIGASSDPATRAAAGLNPVSGMDTSLEEA 158 Query: 92 REISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSG 151 + ++ +T +V+AL+ LI+S NPL K GKIW PHR I +M +DY P+G Sbjct: 159 QSLAPGAVTATVEALSALIESGNPLFKGGKIWAPHRPARPEKSEGGIPI-RMVSDYEPAG 217 Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQP AI L++GI++ E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APNK LAAQLYS Sbjct: 218 DQPTAIKDLVEGINAGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYS 277 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR++LER+D Sbjct: 278 EFKHFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRAILERDD 337 Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 CI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV QQYKRQDI +RG+FRV Sbjct: 338 CIIVASVSCIYGIGSVETYTAMTFQMSVGDRIDQRQLLADLVAQQYKRQDINFVRGSFRV 397 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTG K +++++KIYANSHYVTPRPT Sbjct: 398 RGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGHKTGDMKSVKIYANSHYVTPRPT 457 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 LN A+K IKEELK RL ELEK GRLLEAQRLEQR YD+EM+E TG+C IENYSRYLTG Sbjct: 458 LNGAIKAIKEELKQRLAELEKGGRLLEAQRLEQRTRYDIEMMEATGACAGIENYSRYLTG 517 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511 R PGEPPPTLFEYIP+++LLF+DESHV++ QI GMYRGDF RKATLAEYGFRLPSCMDNR Sbjct: 518 RAPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNR 577 Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571 PLRFEEW+ +RP T+ VSATPGSWELEQ G+ EQ+IRPTGL+DPPVE+RSA+TQV+DV Sbjct: 578 PLRFEEWDAMRPPTVAVSATPGSWELEQSGGVFAEQVIRPTGLIDPPVEVRSAKTQVDDV 637 Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 EI + +G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEI+RDLRLG Sbjct: 638 LGEIKETSLKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEILRDLRLG 697 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691 FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD Sbjct: 698 AFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYAD 757 Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-- 749 IT S++ A+DET+RRREKQ+ +N +H I P+SVK KI +++D + D +IS Sbjct: 758 QITGSMRRAMDETSRRREKQVAYNLEHGITPESVKSKISDILDSVYERDHVRADISGASG 817 Query: 750 ---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A L +AHL +L KQM AA +L+FE AAR+RDEIKRLK Sbjct: 818 KGFAAGGHLVGNNLQAHLSALEKQMRDAAADLDFETAARLRDEIKRLK 865 >gi|153008983|ref|YP_001370198.1| excinuclease ABC subunit B [Ochrobactrum anthropi ATCC 49188] gi|151560871|gb|ABS14369.1| excinuclease ABC, B subunit [Ochrobactrum anthropi ATCC 49188] Length = 941 Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQ-----------------S 82 +AD + I EA K R KN + I +R AS+ G S + Sbjct: 40 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRSGRGTSMGGAASAKERAAAGLNPVA 99 Query: 83 SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 + +S + ++ T +VQAL+ LI S NPL KNG++WTPHR + I + Sbjct: 100 GLDISLEDAAGLNPSGATATVQALSDLIASGNPLFKNGELWTPHRPARPDKSEGGIAI-E 158 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI LL+G+ + ++ Q+LLGVTGSGKTFTMA+VI+ QRPA+++APN Sbjct: 159 METSFEPSGDQPTAIRDLLEGLDNDDRTQVLLGVTGSGKTFTMAQVIQRTQRPALILAPN 218 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 219 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 278 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 279 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 338 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 339 NFVRGSFRVRGDTIELFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 398 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL+EL GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 399 SHYVTPRPTLNQAIKSIKEELKHRLVELNNAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 458 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGRNPGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 459 ENYSRYLTGRNPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 518 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 519 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGGWEMEEAGGVFAEQVIRPTGLIDPPVEIR 578 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A++QV+DV EI AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 579 PAKSQVDDVLGEIRETAQKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 638 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV Sbjct: 639 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNV 698 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD IT S+Q A+DET+RRREKQ+ +N++H I P SVK+ I +++ + D Sbjct: 699 DGKVILYADNITGSMQRAMDETSRRREKQVAYNEEHGITPASVKKNISDILGSVYERDHV 758 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ AHL+ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 759 RADISGFAEEGAMMGNNLAAHLEHLEKQMRDAAADLDFEKAARLRDEIKRLRET 812 >gi|239832391|ref|ZP_04680720.1| excinuclease ABC, B subunit [Ochrobactrum intermedium LMG 3301] gi|239824658|gb|EEQ96226.1| excinuclease ABC, B subunit [Ochrobactrum intermedium LMG 3301] Length = 941 Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQ-----------------S 82 +AD + I EA K R KN + I +R AS+ G S + Sbjct: 40 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERAAAGLNPVA 99 Query: 83 SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 + +S + ++ T +VQAL+ LI S NPL KNG++WTPHR I + Sbjct: 100 GLDISLEDAAGLNPSGATATVQALSDLIASGNPLFKNGELWTPHRPARPEKSEGGIAI-E 158 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMA+VI+ QRPA+++APN Sbjct: 159 METSFEPSGDQPTAIRDLVEGLENNDRTQVLLGVTGSGKTFTMAQVIQRTQRPALILAPN 218 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 219 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 278 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 279 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 338 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 339 NFVRGSFRVRGDTIELFPAHLEDRAWRISLFGDEIESITEFDPLTGQKTGDLKSVKIYAN 398 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 399 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 458 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGRNPGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 459 ENYSRYLTGRNPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 518 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 519 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 578 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 579 PAKTQVDDVLGEIRDTAQKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 638 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 639 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 698 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD IT S+Q A+DET+RRREKQ+ +N++H I P SVK+ I +++ + D Sbjct: 699 DGKVILYADNITGSMQRAMDETSRRREKQVAYNEEHGITPASVKKNISDILGSVYERDHV 758 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ AHL+ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 759 RADISGFAEEGAMMGNNLAAHLEHLEKQMRDAAADLDFEKAARLRDEIKRLRET 812 >gi|254719547|ref|ZP_05181358.1| excinuclease ABC subunit B [Brucella sp. 83/13] gi|265984556|ref|ZP_06097291.1| excinuclease ABC subunit B [Brucella sp. 83/13] gi|306838487|ref|ZP_07471328.1| excinuclease ABC, B subunit [Brucella sp. NF 2653] gi|264663148|gb|EEZ33409.1| excinuclease ABC subunit B [Brucella sp. 83/13] gi|306406451|gb|EFM62689.1| excinuclease ABC, B subunit [Brucella sp. NF 2653] Length = 940 Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 615/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED+AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDLAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKQRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVE+R Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEVR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|17986784|ref|NP_539418.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M] gi|17982414|gb|AAL51682.1| excinuclease abc subunit b [Brucella melitensis bv. 1 str. 16M] Length = 909 Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 5 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 64 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 65 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 123 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 124 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 183 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 184 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 243 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 244 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 303 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 304 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 363 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 364 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 423 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 424 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 483 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 484 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 543 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 544 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 603 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 604 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 663 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 664 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 723 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 724 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 777 >gi|23502381|ref|NP_698508.1| excinuclease ABC subunit B [Brucella suis 1330] gi|23348365|gb|AAN30423.1| excinuclease ABC, B subunit [Brucella suis 1330] Length = 940 Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/774 (64%), Positives = 612/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK------------------GEFQSQS 82 +AD + I EA K R KN + I +R AS+ + Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASVKERTAAGLNPVA 95 Query: 83 SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 + +S ++ +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|189024626|ref|YP_001935394.1| excinuclease ABC subunit B [Brucella abortus S19] gi|260546937|ref|ZP_05822676.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038] gi|189020198|gb|ACD72920.1| excinuclease ABC subunit B [Brucella abortus S19] gi|260095987|gb|EEW79864.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038] Length = 940 Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|62290400|ref|YP_222193.1| excinuclease ABC subunit B [Brucella abortus bv. 1 str. 9-941] gi|82700322|ref|YP_414896.1| excinuclease ABC subunit B [Brucella melitensis biovar Abortus 2308] gi|237815904|ref|ZP_04594901.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A] gi|254697840|ref|ZP_05159668.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|256257948|ref|ZP_05463484.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68] gi|260762278|ref|ZP_05874621.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260884246|ref|ZP_05895860.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68] gi|297248785|ref|ZP_06932503.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196] gi|62196532|gb|AAX74832.1| UvrB, excinuclease ABC, B subunit [Brucella abortus bv. 1 str. 9-941] gi|82616423|emb|CAJ11486.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B subunit [Brucella melitensis biovar Abortus 2308] gi|237789202|gb|EEP63413.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A] gi|260672710|gb|EEX59531.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260873774|gb|EEX80843.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68] gi|297175954|gb|EFH35301.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196] Length = 940 Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|225852990|ref|YP_002733223.1| excinuclease ABC subunit B [Brucella melitensis ATCC 23457] gi|256263530|ref|ZP_05466062.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9] gi|225641355|gb|ACO01269.1| excinuclease ABC, B subunit [Brucella melitensis ATCC 23457] gi|263093558|gb|EEZ17583.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9] gi|326409529|gb|ADZ66594.1| excinuclease ABC subunit B [Brucella melitensis M28] gi|326539237|gb|ADZ87452.1| excinuclease ABC, B subunit [Brucella melitensis M5-90] Length = 940 Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|163843766|ref|YP_001628170.1| excinuclease ABC subunit B [Brucella suis ATCC 23445] gi|163674489|gb|ABY38600.1| excinuclease ABC, B subunit [Brucella suis ATCC 23445] Length = 940 Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|225627954|ref|ZP_03785990.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo] gi|254694187|ref|ZP_05156015.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya] gi|254702229|ref|ZP_05164057.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513] gi|254708177|ref|ZP_05170005.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10] gi|254710548|ref|ZP_05172359.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94] gi|256032042|ref|ZP_05445656.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1] gi|256114068|ref|ZP_05454838.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether] gi|256160238|ref|ZP_05457932.1| excinuclease ABC subunit B [Brucella ceti M490/95/1] gi|256255444|ref|ZP_05460980.1| excinuclease ABC subunit B [Brucella ceti B1/94] gi|260169177|ref|ZP_05755988.1| excinuclease ABC subunit B [Brucella sp. F5/99] gi|261214495|ref|ZP_05928776.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya] gi|261222651|ref|ZP_05936932.1| excinuclease ABC subunit B [Brucella ceti B1/94] gi|261315685|ref|ZP_05954882.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10] gi|261318123|ref|ZP_05957320.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94] gi|261752803|ref|ZP_05996512.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513] gi|261758692|ref|ZP_06002401.1| excinuclease ABC subunit B [Brucella sp. F5/99] gi|265989153|ref|ZP_06101710.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1] gi|265995404|ref|ZP_06107961.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether] gi|265998615|ref|ZP_06111172.1| excinuclease ABC subunit B [Brucella ceti M490/95/1] gi|306843141|ref|ZP_07475761.1| excinuclease ABC, B subunit [Brucella sp. BO2] gi|306844513|ref|ZP_07477102.1| excinuclease ABC, B subunit [Brucella sp. BO1] gi|225617117|gb|EEH14163.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo] gi|260916102|gb|EEX82963.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya] gi|260921235|gb|EEX87888.1| excinuclease ABC subunit B [Brucella ceti B1/94] gi|261297346|gb|EEY00843.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94] gi|261304711|gb|EEY08208.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10] gi|261738676|gb|EEY26672.1| excinuclease ABC subunit B [Brucella sp. F5/99] gi|261742556|gb|EEY30482.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513] gi|262553239|gb|EEZ09073.1| excinuclease ABC subunit B [Brucella ceti M490/95/1] gi|262766517|gb|EEZ12306.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether] gi|264661350|gb|EEZ31611.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1] gi|306275124|gb|EFM56880.1| excinuclease ABC, B subunit [Brucella sp. BO1] gi|306286664|gb|EFM58222.1| excinuclease ABC, B subunit [Brucella sp. BO2] Length = 940 Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|260565267|ref|ZP_05835751.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M] gi|260151335|gb|EEW86429.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M] Length = 940 Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|256369928|ref|YP_003107439.1| excinuclease ABC subunit B [Brucella microti CCM 4915] gi|256000091|gb|ACU48490.1| excinuclease ABC subunit B [Brucella microti CCM 4915] Length = 940 Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGMRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|254730730|ref|ZP_05189308.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292] gi|260758452|ref|ZP_05870800.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292] gi|260668770|gb|EEX55710.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292] Length = 863 Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|294852830|ref|ZP_06793503.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026] gi|294821419|gb|EFG38418.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026] Length = 940 Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLMEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSC+DNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCIDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYEHDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|254704764|ref|ZP_05166592.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686] gi|261755462|ref|ZP_05999171.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686] gi|261745215|gb|EEY33141.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686] Length = 940 Score = 1045 bits (2702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTF MA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFAMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|161619459|ref|YP_001593346.1| excinuclease ABC subunit B [Brucella canis ATCC 23365] gi|260565991|ref|ZP_05836461.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40] gi|161336270|gb|ABX62575.1| excinuclease ABC, B subunit [Brucella canis ATCC 23365] gi|260155509|gb|EEW90589.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40] Length = 940 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTF MA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFAMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|254714731|ref|ZP_05176542.1| excinuclease ABC subunit B [Brucella ceti M644/93/1] gi|254717791|ref|ZP_05179602.1| excinuclease ABC subunit B [Brucella ceti M13/05/1] gi|261219641|ref|ZP_05933922.1| excinuclease ABC subunit B [Brucella ceti M13/05/1] gi|261322529|ref|ZP_05961726.1| excinuclease ABC subunit B [Brucella ceti M644/93/1] gi|260924730|gb|EEX91298.1| excinuclease ABC subunit B [Brucella ceti M13/05/1] gi|261295219|gb|EEX98715.1| excinuclease ABC subunit B [Brucella ceti M644/93/1] Length = 940 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMY GDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYHGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQTYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|256061564|ref|ZP_05451706.1| excinuclease ABC subunit B [Brucella neotomae 5K33] gi|261325573|ref|ZP_05964770.1| excinuclease ABC subunit B [Brucella neotomae 5K33] gi|261301553|gb|EEY05050.1| excinuclease ABC subunit B [Brucella neotomae 5K33] Length = 940 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHV++PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVSVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|254689697|ref|ZP_05152951.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870] gi|260755232|ref|ZP_05867580.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870] gi|260675340|gb|EEX62161.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870] Length = 940 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEI Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIH 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|148560683|ref|YP_001259390.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840] gi|148371940|gb|ABQ61919.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840] Length = 940 Score = 1044 bits (2699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLMEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYAN Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC I Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEIR Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKE FLRS+TSLIQTIGRAARNV Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEDFLRSETSLIQTIGRAARNV 694 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808 >gi|319781919|ref|YP_004141395.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167807|gb|ADV11345.1| excinuclease ABC, B subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1056 Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/728 (66%), Positives = 594/728 (81%), Gaps = 6/728 (0%) Query: 69 RENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRS 128 RE TA+ + IS+ + +T ++ ++T +V AL+ LI+S NPL K+G +WTPHR Sbjct: 114 RERTAAGLNPVAGLDISLEDAET--MASGSVTATVAALSALIESGNPLHKDGVLWTPHRP 171 Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 I +M +++ P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAKV Sbjct: 172 ARPEKSEGGIAI-KMVSEFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKV 230 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 IE QRPA+++APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKE Sbjct: 231 IEETQRPALILAPNKTLAAQLYSEFKKFFPENAVEYFVSYYDYYQPEAYVPRTDTFIEKE 290 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINEQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M Q++IGD ++Q+ L Sbjct: 291 SSINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRAL 350 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 L+ LV QQYKRQDI +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTG Sbjct: 351 LADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTG 410 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 QK ++++KIYANSHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR + Sbjct: 411 QKTGELKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLVELERAGRLLEAQRLEQRCRF 470 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEMLE TGSC IENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYR Sbjct: 471 DLEMLEATGSCAGIENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYR 530 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATPG+WE+EQ G+ EQ+ Sbjct: 531 GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLSVAVSATPGAWEMEQAGGVFAEQV 590 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 IRPTGL+DPPVE+R A++QV+DV EI + G R L+TVLTKRMAEDLTEYL+E+ IR Sbjct: 591 IRPTGLIDPPVEVRPAKSQVDDVVGEIRDTTKAGYRTLVTVLTKRMAEDLTEYLHEQGIR 650 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+ Sbjct: 651 VRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSE 710 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 TSLIQTIGRAARNV+ KVILYAD +T S++ A+ ET RRREKQ+E N + I P+SVK + Sbjct: 711 TSLIQTIGRAARNVDGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSR 770 Query: 729 IMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 I +++D + +D +IS D + KAHL ++ KQM AA NL+FE+AARI Sbjct: 771 ISDILDSVYEKDHVRADISQFTDGAGAMMGNNL-KAHLDAMEKQMRDAAANLDFEKAARI 829 Query: 787 RDEIKRLK 794 RDEIKRL+ Sbjct: 830 RDEIKRLR 837 >gi|260467467|ref|ZP_05813636.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075] gi|259028749|gb|EEW30056.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075] Length = 1056 Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/712 (67%), Positives = 585/712 (82%), Gaps = 4/712 (0%) Query: 84 ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143 +S+ E +T ++ +T +V AL+ LI+S NPL K+G +WTPHR I +M Sbjct: 129 VSLEEAET--MTSSGVTATVAALSALIESGNPLHKDGVLWTPHRPARPEKSEGGIAI-KM 185 Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203 +D+ P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK Sbjct: 186 VSDFEPAGDQPTAIKDLVEGVENNDRTQVLLGVTGSGKTFTMAKVIEETQRPALILAPNK 245 Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263 LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSAT Sbjct: 246 TLAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSAT 305 Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 RSLLER+D I+V+SVSCIYGIGSVE+Y+ M Q++IGD ++Q+ LL+ LV QQYKRQDI Sbjct: 306 RSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYKRQDIN 365 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK ++++KIYANS Sbjct: 366 FVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVKIYANS 425 Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443 HYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR +DLEMLE TGSC IE Sbjct: 426 HYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRCRFDLEMLEATGSCAGIE 485 Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503 NYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGFR Sbjct: 486 NYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFR 545 Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563 LPSCMDNRPLRFEEW+ +RP ++ VSATPG WE+EQ G+ EQ+IRPTGL+DPPVE+R Sbjct: 546 LPSCMDNRPLRFEEWDAMRPLSVAVSATPGGWEMEQAGGVFAEQVIRPTGLIDPPVEVRP 605 Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 A++QV+DV EI G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIE Sbjct: 606 AKSQVDDVVGEIRETTNAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIE 665 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 I+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ Sbjct: 666 ILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVD 725 Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743 KVILYAD +T S++ A+ ET RRREKQ+E N + I P+SVK +I +++D + +D Sbjct: 726 GKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYEKDHVR 785 Query: 744 TNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +IS ++ KAHL ++ KQM AA NL+FE+AARIRDEIKRL+ Sbjct: 786 ADISQFTDSAGAMMGNNLKAHLDAMDKQMRDAAANLDFEKAARIRDEIKRLR 837 >gi|163760755|ref|ZP_02167835.1| excinuclease ABC subunit B [Hoeflea phototrophica DFL-43] gi|162282077|gb|EDQ32368.1| excinuclease ABC subunit B [Hoeflea phototrophica DFL-43] Length = 982 Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/801 (62%), Positives = 607/801 (75%), Gaps = 38/801 (4%) Query: 31 EEKQLEVDKTMVADAMRRIRSEAGKHRKNAAK-------RMLIHQRENTASKGEFQSQSS 83 +E +L+ K R +RS+AGKHR A K + + TA K + ++ + Sbjct: 47 KEAELDAVKARRKAENRELRSQAGKHRLKAGKTKDEVPAKSPAKGKAATAEKSKKTARGT 106 Query: 84 -----------------------ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120 IS+ E + + T +VQAL+ LI+S NPL KNG Sbjct: 107 SIGSTNDPRARAAAGLNAVAGLDISVEEAEASGATSAN-TATVQALSDLIESGNPLFKNG 165 Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 K W PHR + +M T+Y P+GDQP AIA L+ G + E+ Q+LLGVTGSG Sbjct: 166 KTWVPHRPARPEKSEGGVPI-RMATEYKPAGDQPTAIADLVAGANENERNQVLLGVTGSG 224 Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 KTFTMAKVIE QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR Sbjct: 225 KTFTMAKVIEETQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPR 284 Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDT+IEKES++NEQIDRMRHSATR+L+ER+D I+V+SVSCIYGIGSVE+Y+ M Q+ +G Sbjct: 285 TDTFIEKESTVNEQIDRMRHSATRALMERDDVIIVASVSCIYGIGSVETYTAMTFQMSVG 344 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 D ++Q++LL+ LV QQYKR+D+ RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I Sbjct: 345 DRIDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIELFPAHLEDAAWRISLFGDEIETI 404 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 EF PLTG+K +++++KIYANSHYVTPRPTLN A K+I+EELK RL ELE GRLLEAQ Sbjct: 405 VEFDPLTGKKTGDLKSVKIYANSHYVTPRPTLNQATKHIREELKHRLAELEASGRLLEAQ 464 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RLEQR +DLEMLE TG CQ IENYSRYLTGR PGEPPPTLFEYIP+++LLF+DESHV+I Sbjct: 465 RLEQRTRFDLEMLEATGVCQGIENYSRYLTGRAPGEPPPTLFEYIPDNALLFIDESHVSI 524 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+ +RP T+ VSATPG+WE+EQ Sbjct: 525 PQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAMRPCTVAVSATPGNWEMEQA 584 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 G+ EQ+IRPTGL+DPPVE+R A QV+DV EI A+ G R L TVLTKRMAEDLTE Sbjct: 585 GGVFAEQVIRPTGLIDPPVEVRPAHAQVDDVLGEIRATAEAGYRTLCTVLTKRMAEDLTE 644 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YL+E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDAD Sbjct: 645 YLHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDAD 704 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ A++ET+RRR KQ E+N + I Sbjct: 705 KEGFLRSETSLIQTIGRAARNVDGKVILYADKVTGSMERAMEETSRRRAKQEEYNAANGI 764 Query: 721 NPQSVKEKIMEVIDPILLED------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774 P+SVK I +++D + D +A T + +L KAHL++L KQM A Sbjct: 765 TPESVKAHISDILDSVYERDHVRASISAPTGKGKGQDEGALVGANLKAHLEALEKQMRDA 824 Query: 775 ADNLNFEEAARIRDEIKRLKS 795 A +L+FE AAR+RDE+KRLK+ Sbjct: 825 AADLDFETAARLRDEVKRLKA 845 >gi|90418260|ref|ZP_01226172.1| excinuclease ABC, B subunit (helicase subunit of the DNA excision repair complex) [Aurantimonas manganoxydans SI85-9A1] gi|90337932|gb|EAS51583.1| excinuclease ABC, B subunit (helicase subunit of the DNA excision repair complex) [Aurantimonas manganoxydans SI85-9A1] Length = 1102 Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/714 (66%), Positives = 581/714 (81%), Gaps = 1/714 (0%) Query: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141 + + +S + + + E +T +V AL +LI +PLLKNG+IW PHR + + F Sbjct: 134 AGMDLSLEDAKGLPEGGVTATVDALTKLISEGDPLLKNGEIWVPHRPARPDKSEGGVPF- 192 Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 ++ +DY P GDQP AIA L+ GI ++ Q+LLGVTGSGKTF++A VIE QRPA+++AP Sbjct: 193 RIASDYTPQGDQPTAIADLVSGITDHDQTQVLLGVTGSGKTFSVANVIERTQRPALILAP 252 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ Sbjct: 253 NKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHA 312 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M Q+ IGD ++Q++LL+ LV QQYKR+D Sbjct: 313 ATRALLERDDVIIVASVSCIYGIGSVETYTAMTFQMSIGDRLDQRQLLADLVAQQYKRRD 372 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 + RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I EF PLTGQK +++++KIYA Sbjct: 373 MDFQRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIESIQEFDPLTGQKTDSLKSVKIYA 432 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A++ IKEEL+ RL+ELEK GRLLEAQRLEQR +D+EM+E TGSC Sbjct: 433 NSHYVTPRPTLNQAVRLIKEELRHRLVELEKAGRLLEAQRLEQRTRFDIEMIEATGSCPG 492 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGR PG PPPTLFEY+P+++L+F+DESHVT+PQI MYRGDF RKATLAEYG Sbjct: 493 IENYSRYLTGRQPGHPPPTLFEYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYG 552 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEWN +RP T+ VSATPGSWE+E+ G+ EQ+IRPTGL+DPPVEI Sbjct: 553 FRLPSCMDNRPLRFEEWNAMRPQTVAVSATPGSWEMEEAGGVFAEQVIRPTGLIDPPVEI 612 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R AR+QV+D+ EI +G R+L TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLER Sbjct: 613 RPARSQVDDLVGEIRDTVDKGYRVLATVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLER 672 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 673 IEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARN 732 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 ++ KVILYAD T S++ AI ET RRREKQ +N +H I P SVK +I +++D +D Sbjct: 733 IDGKVILYADRTTGSMERAIAETNRRREKQEAYNAEHGITPASVKAQIADILDSYYEKDH 792 Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A++ ++ K+HL+ L KQM AA +L+FE AAR+RDEIKRL++ Sbjct: 793 VRVDVGPGAKEGAMVGNNLKSHLEHLEKQMRDAAADLDFETAARLRDEIKRLQA 846 >gi|114706909|ref|ZP_01439809.1| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506] gi|114537857|gb|EAU40981.1| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506] Length = 1094 Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/715 (66%), Positives = 578/715 (80%), Gaps = 2/715 (0%) Query: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141 + + +S + + + E +T +VQAL+ LI S NPL KNG+IW PHR + F Sbjct: 125 AGMDVSLEDAKSLPEGGVTATVQALSDLISSGNPLHKNGEIWLPHRPARPEKSEGGVKF- 183 Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 ++ +DY P GDQP AIA L+ G+ ++K Q+LLGVTGSGKTFT+A VIE QRPA+V+AP Sbjct: 184 RIASDYTPMGDQPTAIADLVSGVSDQDKTQVLLGVTGSGKTFTVANVIERTQRPALVLAP 243 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+ Sbjct: 244 NKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHA 303 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 ATR+LLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV QQYKR+D Sbjct: 304 ATRALLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 363 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 + RG+FRV GD+IEIFP+HLED AWR+SMFG++IE I EF PLTG+K +++++KIYA Sbjct: 364 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIEAIHEFDPLTGRKTDDLKSVKIYA 423 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A+K IKEELK RL ELEK GRLLEAQRLEQR +D+EM+E TGSC Sbjct: 424 NSHYVTPRPTLNQAIKSIKEELKHRLAELEKAGRLLEAQRLEQRTRFDIEMIEATGSCPG 483 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGR PG PPPTLFEY+P+++L+F+DESHVT+PQI MYRGDF RKATLAEYG Sbjct: 484 IENYSRYLTGRQPGHPPPTLFEYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYG 543 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEW+ +RP T+ VSATP +WELEQ G+ EQ+IRPTGL DPPVEI Sbjct: 544 FRLPSCMDNRPLRFEEWDAMRPQTVAVSATPSTWELEQSGGVFAEQVIRPTGLTDPPVEI 603 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R ARTQV+D+ EI +G R+L TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLER Sbjct: 604 RPARTQVDDLLGEIRETVDRGYRVLCTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLER 663 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEIIRDLRLG FD LVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 664 IEIIRDLRLGAFDCLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARN 723 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 V+ KVILYAD T S++ AI ET RRREKQL +N +H I P SVK KI +++D +D Sbjct: 724 VDGKVILYADNETGSMKRAIAETDRRREKQLAYNAEHGITPASVKAKIADILDSYYEKDH 783 Query: 742 ATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A+ + + +AH++ L K M AA +L+FE+AA++RDEIK+L++ Sbjct: 784 VRIDVGGMAEDEGAFVGNNLRAHIEHLEKSMREAAADLDFEKAAKLRDEIKKLQA 838 >gi|110634481|ref|YP_674689.1| excinuclease ABC subunit B [Mesorhizobium sp. BNC1] gi|110285465|gb|ABG63524.1| Excinuclease ABC subunit B [Chelativorans sp. BNC1] Length = 928 Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/718 (66%), Positives = 585/718 (81%), Gaps = 7/718 (0%) Query: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141 + + ++ ++ I+ +T +V AL+ LI+ +P LK+ W PHR I F Sbjct: 84 AGLDVTLEEAERIAPGGVTATVAALSNLIEGGDPNLKSA--WVPHRPPRPEKSEGGIPF- 140 Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 +M T++ PSGDQP AI L++GI + E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++AP Sbjct: 141 RMATEFKPSGDQPTAIRDLVEGISTSERTQVLLGVTGSGKTFTMAKVIEETQRPALILAP 200 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS Sbjct: 201 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 260 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++LL+ LV+QQYKR+D Sbjct: 261 ATRALLERDDVIIVASVSCIYGIGSVETYTAMTFQMAVGDRLDQRQLLADLVEQQYKRRD 320 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTG+K +++++KIYA Sbjct: 321 ADFTRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIEAITEFDPLTGKKTDDLKSVKIYA 380 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A++ IKEELK+RL+ELEK GRLLEAQRLEQR +DLEMLE TGSC Sbjct: 381 NSHYVTPRPTLNQAIRQIKEELKLRLVELEKAGRLLEAQRLEQRTRFDLEMLEATGSCAG 440 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGRNPGEPPPTLFEY+P+++L+FVDESHVT+PQI MYRGDF RKATLAEYG Sbjct: 441 IENYSRYLTGRNPGEPPPTLFEYVPDNALVFVDESHVTVPQIGAMYRGDFRRKATLAEYG 500 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEW+ +RP T+ VSATPG+WE+EQ G+ EQ+IRPTGL+DPPVEI Sbjct: 501 FRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGNWEMEQSGGVFAEQVIRPTGLIDPPVEI 560 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R A++QV+DV EI + G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLER Sbjct: 561 RPAKSQVDDVLGEIRETTKAGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLER 620 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARN Sbjct: 621 IEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARN 680 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 V+ +VILYAD IT S++ AI ET RRREKQLE+N + I P+S+K+ I +++ + D Sbjct: 681 VDGRVILYADHITGSMERAIAETNRRREKQLEYNAGNGITPESIKKNIGDILGSVYERDH 740 Query: 742 ATTNISIDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 I A+ L+ G +AHL+ L K M AA +L+FEEAAR+RDEIKRL+ + Sbjct: 741 VRAEIG-GAKGDDLNNLVGNNLQAHLEYLEKAMRDAAADLDFEEAARLRDEIKRLRET 797 >gi|319408898|emb|CBI82555.1| excinuclease ABC, subunit B [Bartonella schoenbuchensis R1] Length = 855 Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/710 (67%), Positives = 577/710 (81%), Gaps = 2/710 (0%) Query: 85 SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144 + S+ + ++ +T +V+AL+ LI SDNPL KNG +WTPHR I F Q+ Sbjct: 48 AASDFTSHNATKTGVTATVEALSTLIASDNPLFKNGTVWTPHRPIRPEKSEGGIPF-QIN 106 Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 T + P+GDQPAAI L++G+ E+ Q+LLG+TGSGKT+TMAK+IE QRPA+++APNK Sbjct: 107 TPFEPAGDQPAAIKALVEGVERNERTQVLLGITGSGKTYTMAKIIEETQRPALILAPNKT 166 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR Sbjct: 167 LAAQLYGEFKSFFPKNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATR 226 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 ++LER+D I+V+SVSCIYGIGSVE+Y+ M Q++ GD + Q++LL+ LV QQY+RQDI Sbjct: 227 AVLERDDVIIVASVSCIYGIGSVETYTAMTFQMQKGDKLNQRQLLADLVTQQYRRQDINF 286 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RG+FRV GD+IEIFPSHLED AWR+S+FG++IE I+EF PLTGQK ++++IKIYANSH Sbjct: 287 TRGSFRVRGDTIEIFPSHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLQSIKIYANSH 346 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPRPTLN A+K IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IEN Sbjct: 347 YVTPRPTLNQAIKAIKMELAQRLDELNSVGRLLEAQRLEQRTIFDLEMLETTGSCSGIEN 406 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYLTGRNPGEPPPT+FEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRL Sbjct: 407 YSRYLTGRNPGEPPPTMFEYIPNNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRL 466 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ G+ VEQIIRPTGL+DP ++R A Sbjct: 467 PSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQTCGVFVEQIIRPTGLIDPLTQVRPA 526 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 R QV+DV +EI ++G R L+TVLTKRMAEDLTEYL+E NIRVRYMHS++ TLERIEI Sbjct: 527 RIQVDDVMNEIRKTIKKGYRTLVTVLTKRMAEDLTEYLHEHNIRVRYMHSDIDTLERIEI 586 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +RDLRLG FDVL+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ Sbjct: 587 LRDLRLGTFDVLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDG 646 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 VILYADTIT SI+ A+ ETTRRR+KQ+ +N++H+I P S+++ I +V++ + E+ Sbjct: 647 HVILYADTITNSIERALQETTRRRQKQIAYNEEHHITPTSIQKNIGDVLNSV-YENNHHA 705 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +I Q + H++ L K M AA NLNFEEAAR+RDEIKRL+ Sbjct: 706 DIPDFIAQNNKVDNNLANHIQHLEKSMREAAANLNFEEAARLRDEIKRLQ 755 >gi|319403836|emb|CBI77422.1| excinuclease ABC, subunit B [Bartonella rochalimae ATCC BAA-1498] Length = 806 Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/711 (67%), Positives = 579/711 (81%), Gaps = 3/711 (0%) Query: 85 SMSEKQTREISE-QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143 +++ K ++ I++ ++T +V+AL+ LI NPL KNG +WTPHR I F Q+ Sbjct: 44 TINTKPSKNITKTNSVTATVEALSALIALGNPLFKNGALWTPHRPIRPEKSEGGIPF-QI 102 Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203 +T + P+GDQP AI L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK Sbjct: 103 KTSFQPAGDQPIAIKSLVEGIKRNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNK 162 Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263 LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+AT Sbjct: 163 TLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAAT 222 Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 R++LER+D I+++SVSCIYGIGSVE+Y+ M Q++ GD ++Q++LL+ LV QQY+RQDI Sbjct: 223 RAVLERDDVIIIASVSCIYGIGSVETYTAMTFQMQKGDKLDQQKLLTDLVSQQYQRQDIN 282 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK ++++IKIYANS Sbjct: 283 FVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTADLQSIKIYANS 342 Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443 HYVTPRPTLN A+K IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IE Sbjct: 343 HYVTPRPTLNQAIKSIKMELVKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIE 402 Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503 NYSRYLTGR PGEPPPTLFEYIP +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFR Sbjct: 403 NYSRYLTGRKPGEPPPTLFEYIPSHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFR 462 Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563 LPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ QGI VEQ+IRPTGL+DPP EIR Sbjct: 463 LPSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQSQGIFVEQVIRPTGLIDPPTEIRP 522 Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 +TQV+D +EI+ ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIE Sbjct: 523 VKTQVDDAVNEIHQTIKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIE 582 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 I+RDLRLG FDVL+GINLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV Sbjct: 583 ILRDLRLGTFDVLIGINLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVE 642 Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743 S+VILYADTIT SIQ A+ ET RRR+KQ+ +NK+H I P S+K+ I +++ + E+ Sbjct: 643 SRVILYADTITGSIQRALQETKRRRQKQIAYNKEHQITPTSIKKNIDDILSSV-CENNHN 701 Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 IS Q + H++ L K M AA++LNFEEAA+ RDEIKRL+ Sbjct: 702 VKISHFITQNNKVGNNLTNHIQHLEKLMRKAANDLNFEEAAQFRDEIKRLQ 752 >gi|328542853|ref|YP_004302962.1| Helicase subunit of the DNA excision repair complex [polymorphum gilvum SL003B-26A1] gi|326412599|gb|ADZ69662.1| Helicase subunit of the DNA excision repair complex [Polymorphum gilvum SL003B-26A1] Length = 1059 Score = 1009 bits (2609), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/700 (66%), Positives = 567/700 (81%), Gaps = 2/700 (0%) Query: 97 QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156 Q T +V AL+ LI+S NPL KNG IW PHR + ++ ++Y P+GDQP A Sbjct: 185 QGATATVAALSALIESGNPLHKNGDIWVPHRPERPAKSEGGVPI-KLVSEYEPAGDQPTA 243 Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 IA+L+ G+ S E+ Q+LLGVTGSGKT+TMA+VI QRPA+++APNK LAAQLY EFK+F Sbjct: 244 IAELVGGVESGEQTQVLLGVTGSGKTYTMAQVIARTQRPALILAPNKTLAAQLYGEFKSF 303 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 FP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRH+ATR+LLER+D I+V+ Sbjct: 304 FPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHAATRALLERDDVIIVA 363 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 SVSCIYGIGSVE+Y+ M L++G+ ++Q++LL+ LV QYKR D RG+FRV GD++ Sbjct: 364 SVSCIYGIGSVETYTAMTFALEVGERIDQRQLLADLVALQYKRNDAAFQRGSFRVRGDTV 423 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 E+FP+H ED AWR+S+FG+++E I+EF PLTG+K ++++KIYANSHYVTP+PTL A+ Sbjct: 424 ELFPAHYEDRAWRISLFGDEVEAITEFDPLTGKKSGEMKSVKIYANSHYVTPKPTLAQAI 483 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 K IK ELK RL EL GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGR PGE Sbjct: 484 KSIKAELKTRLDELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRYLTGRAPGE 543 Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516 PPPTLFEY+P+D+L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFE Sbjct: 544 PPPTLFEYLPDDALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 603 Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576 EWN +RP T+ VSATPGSWE+EQ G+ EQ+IRPTGLVDPPV+IR A +QV+D+ E+ Sbjct: 604 EWNAMRPQTVCVSATPGSWEMEQSGGVFAEQVIRPTGLVDPPVDIRPASSQVDDLLGEVR 663 Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A +G R L+T LTKRMAEDLTEYL+E +RVRYMHS++ TLERIEIIRDLRLG FDVL Sbjct: 664 AVAAKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVL 723 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 VGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYADT+T S Sbjct: 724 VGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADTMTGS 783 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756 ++ AI ET RRR+KQL +N +H I P+SVK I +++D + +D T + A+ SL Sbjct: 784 MERAIAETNRRRDKQLAYNAEHGITPESVKRSIADILDSVYEQDHVTVDAGF-AEAGSLV 842 Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 KAH++SL K+M AA +L FE AAR+RDEIKRL+ + Sbjct: 843 GHNLKAHIESLEKRMREAAADLEFETAARLRDEIKRLQET 882 >gi|163867953|ref|YP_001609157.1| excinuclease ABC subunit B [Bartonella tribocorum CIP 105476] gi|161017604|emb|CAK01162.1| excinuclease ABC, subunit B [Bartonella tribocorum CIP 105476] Length = 711 Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/696 (68%), Positives = 568/696 (81%), Gaps = 1/696 (0%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T +V+AL+ LI S NPL KNG +WTPHR I F Q++T + +GDQP AI Sbjct: 5 VTATVEALSALIASGNPLFKNGALWTPHRPIPPEKSEGGIPF-QLETSFKAAGDQPQAIK 63 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++GI E+ Q+LLGVTGSGKT+TMAKVIE QRPA+++APNK LAAQLY EFK+FFP Sbjct: 64 TLVEGIEKDERTQVLLGVTGSGKTYTMAKVIEQTQRPALILAPNKTLAAQLYGEFKSFFP 123 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M Q++ GD + Q++LL+ LV QQY RQDI RG+FRV GD+IEI Sbjct: 184 SCIYGIGSVETYTAMTFQIEKGDKLNQRKLLADLVSQQYYRQDINFTRGSFRVRGDTIEI 243 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP HLED AWR+S+FG+++E I+EF PLTGQK ++++IKIYANSHYV PRPTLN AMK Sbjct: 244 FPVHLEDRAWRISLFGDEVETITEFDPLTGQKTEDLQSIKIYANSHYVIPRPTLNQAMKA 303 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IENYSRYLTGRNPGEPP Sbjct: 304 IKMELAQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRNPGEPP 363 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW Sbjct: 364 PTLFEYIPLNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 423 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +RP TI VSATPG WE+EQ GI EQIIRPTGLVDP EIR ARTQV+DV +EI Sbjct: 424 DAMRPQTIAVSATPGRWEIEQSHGIFAEQIIRPTGLVDPETEIRPARTQVDDVVNEIRNT 483 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 Q+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FDVL+G Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGTFDVLIG 543 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT SI+ Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGSIE 603 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 A+ ET RRR+KQ+ +NK+H+I P S+K+ I ++++ T IS Q ++ Sbjct: 604 RALQETQRRRQKQITYNKEHHITPTSIKKNIDDILNAGNENQKTLTRISNFITQNNMDHN 663 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +H++SL K M AA +LNFEEAAR+RDEIK+L+ Sbjct: 664 NLASHIQSLEKSMRKAAADLNFEEAARLRDEIKQLQ 699 >gi|118591823|ref|ZP_01549218.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B [Stappia aggregata IAM 12614] gi|118435466|gb|EAV42112.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B [Stappia aggregata IAM 12614] Length = 976 Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/700 (66%), Positives = 571/700 (81%), Gaps = 2/700 (0%) Query: 97 QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156 Q T +V+AL+ LI+S NPL KNG++W PHR + +++ Y P GDQP A Sbjct: 157 QGATATVEALSALIESGNPLHKNGELWVPHRPERPEKSEGGVPIV-LKSAYEPKGDQPTA 215 Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 IA L++G+ + E+ Q+LLGVTGSGKT+TMA+VI QRPA+++APNK LAAQLY EFK+F Sbjct: 216 IADLVEGMENGEQTQVLLGVTGSGKTYTMAQVISRTQRPALILAPNKTLAAQLYGEFKSF 275 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 FP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER+D I+V+ Sbjct: 276 FPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERDDVIIVA 335 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 SVSCIYGIGSVE+Y+ M +++G+ ++Q++L++ LV QYKR D RGTFRV GD+I Sbjct: 336 SVSCIYGIGSVETYTAMTFAIEVGERMDQRQLIADLVALQYKRNDAAFQRGTFRVRGDTI 395 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 E+FP+H ED AWR+SMFG++IE I+EF PLTGQK ++++KIYANSHYVTP+PTLN A+ Sbjct: 396 ELFPAHYEDTAWRISMFGDEIESITEFDPLTGQKSGELKSVKIYANSHYVTPKPTLNQAI 455 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 K IK+ELK RL EL + GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGR PGE Sbjct: 456 KSIKDELKHRLEELNQHGRLLEAQRLEQRTMFDLEMLEATGSCAGIENYSRYLTGRKPGE 515 Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516 PPPTLFEY+P+++++F DESHVTIPQI MYRGDF RKATLAEYGFRLPSCMDNRPLRFE Sbjct: 516 PPPTLFEYLPDNAIVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 575 Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576 EWN +RP +I VSATPGSWE+EQ G+ EQ+IRPTGL+DPPVEIR A +QV+D+ E+ Sbjct: 576 EWNAMRPQSIAVSATPGSWEMEQAGGVFAEQVIRPTGLIDPPVEIRPATSQVDDLLGEVR 635 Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 AQ+G R L+T LTKRMAEDLTEYL+E +RVRYMHS++ TLERIEI+RDLRLG FDVL Sbjct: 636 EVAQKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEILRDLRLGAFDVL 695 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 VGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S Sbjct: 696 VGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGS 755 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756 ++ AI ET RRREKQL +N++H I P+SV+ I ++++ + +D T + A++ +L Sbjct: 756 MERAIAETNRRREKQLAYNEEHGITPESVRRSIGDILESVYEQDHVTIDAGF-AEEGNLV 814 Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 KAH++ L KQM AA +L+FE AAR+RDEIKRL+++ Sbjct: 815 GHNLKAHIEDLEKQMRDAAADLDFETAARLRDEIKRLQAT 854 >gi|49474492|ref|YP_032534.1| excinuclease ABC subunit B [Bartonella quintana str. Toulouse] gi|49239996|emb|CAF26410.1| Excinuclease ABC subunit b [Bartonella quintana str. Toulouse] Length = 774 Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/696 (68%), Positives = 568/696 (81%), Gaps = 1/696 (0%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T +V+AL+ LI SDNP KNG +WTPHR I Q++T + +GDQP AI Sbjct: 5 VTATVEALSALIASDNPFFKNGALWTPHRPVRPKKSEGGIPL-QLETSFEAAGDQPQAIK 63 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK LAAQLY EFK+FFP Sbjct: 64 TLVEGIEKDERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKSFFP 123 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M Q+K GD + Q++LL+ LV Q Y RQDI IRG+FRV GD+IEI Sbjct: 184 SCIYGIGSVETYTAMTFQIKKGDRLNQRQLLADLVAQHYHRQDINFIRGSFRVRGDTIEI 243 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+HLED AWR+S+FG+++E I+EF PLTGQK +++ IKIYANSHYVTPRPTLN A+K Sbjct: 244 FPAHLEDRAWRISLFGDEVETITEFDPLTGQKTSDLQFIKIYANSHYVTPRPTLNQAIKS 303 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK EL RL EL GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGR PGEPP Sbjct: 304 IKMELVQRLDELNAAGRLLEAQRLEQRTIFDLEMLEATGSCPGIENYSRYLTGRKPGEPP 363 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRF+EW Sbjct: 364 PTLFEYIPNNALVFIDESHVTIPQICGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFKEW 423 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +RP TI VSATPG WE+EQ GI VEQIIRPTGL+DPP E+R A TQV+DV +EI Sbjct: 424 DLMRPQTIAVSATPGRWEIEQSHGIFVEQIIRPTGLIDPPTEVRPASTQVDDVVNEIRNT 483 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 Q+G R L+TVLTKRMAEDLTEYL+E+ IRV YMHS++ TLERIEI+R+LRLG FDVL+G Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVHYMHSDIDTLERIEILRNLRLGAFDVLIG 543 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT SI+ Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGSIE 603 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 A+ ET RRR+KQ+ +N++H+I P S+K+ I ++++ D TNIS Q S + Sbjct: 604 RALQETQRRRQKQIAYNEEHHITPTSIKKNISDILNSGSKNDHPHTNISDFVTQNSRAGN 663 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 H++ L+K MH AA +LNFEEAAR+RDEIK+L+ Sbjct: 664 NLAKHIQYLKKSMHEAAADLNFEEAARLRDEIKQLQ 699 >gi|49475895|ref|YP_033936.1| excinuclease ABC subunit B [Bartonella henselae str. Houston-1] gi|49238703|emb|CAF27955.1| Excinuclease ABC subunit b [Bartonella henselae str. Houston-1] Length = 770 Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/696 (68%), Positives = 567/696 (81%), Gaps = 1/696 (0%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T +V+AL+ LI S NPL KNG +WTPHR I F Q++T + SGDQP AI Sbjct: 5 VTATVEALSALIASGNPLFKNGALWTPHRPVRPEKSEGGIPF-QLETSFEASGDQPQAIK 63 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK LAAQLY EFK+FFP Sbjct: 64 TLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKSFFP 123 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M +Q+K GD + Q++ L+ LV Q Y RQDI IRG+FRV GD+IEI Sbjct: 184 SCIYGIGSVETYTAMTLQIKKGDKLNQRQFLADLVSQHYYRQDINFIRGSFRVRGDTIEI 243 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+HLED AWR+S+FG+++E I+EF PLTGQK ++++IKIYANSHYV PRPTLN AMK Sbjct: 244 FPAHLEDRAWRISLFGDEVETITEFDPLTGQKTGDLQSIKIYANSHYVIPRPTLNQAMKA 303 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK EL RL EL K GRLLEAQRLEQR +DLEMLETTGSC IENYSRYLTGR PGEPP Sbjct: 304 IKTELVQRLDELNKAGRLLEAQRLEQRTMFDLEMLETTGSCAGIENYSRYLTGRQPGEPP 363 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW Sbjct: 364 PTLFEYIPNNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 423 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +RP TI VSATPG WE+EQ GI EQIIRPTGLVDPP E+R A +QV+DV +EI+ Sbjct: 424 DAMRPQTIAVSATPGRWEIEQSHGIFAEQIIRPTGLVDPPTEVRPASSQVDDVVNEIHKT 483 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 Q+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FDVL+G Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIG 543 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT SI+ Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADIITGSIE 603 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 A+ ET RRREKQ+ +N+KH+I P S+K+ I ++++ TNI Q S + Sbjct: 604 RALQETQRRREKQIAYNEKHHIKPTSIKKNIDDILNSGGENGYTHTNIPDFITQNSKTGN 663 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 H++ L K M AA NL+FEEAAR+RDEIK+L+ Sbjct: 664 NLAKHIQYLEKSMREAAANLHFEEAARLRDEIKKLQ 699 >gi|240850160|ref|YP_002971553.1| excinuclease ABC subunit B [Bartonella grahamii as4aup] gi|240267283|gb|ACS50871.1| excinuclease ABC subunit B [Bartonella grahamii as4aup] Length = 769 Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/697 (68%), Positives = 574/697 (82%), Gaps = 3/697 (0%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T +V+AL+ LI S NPL KNG +WTPHR I F Q++T + P+GDQP AI Sbjct: 5 VTATVEALSALIASGNPLFKNGALWTPHRPVRPEKSEGGIPF-QLETPFEPAGDQPQAIK 63 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK LAAQLY EFK+FFP Sbjct: 64 TLVEGIQKDERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKSFFP 123 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M +++ GD + Q++LL+ LV QQY RQDI IRG+FRV GD+IEI Sbjct: 184 SCIYGIGSVETYTAMTFKIEKGDKLNQRKLLADLVSQQYYRQDINFIRGSFRVRGDTIEI 243 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+HLED AWR+S+FG+++E I+EF PLTGQK ++++IKIYANSHYVTPRPTLN AMK Sbjct: 244 FPAHLEDHAWRISLFGDEVETITEFDPLTGQKTGDLQSIKIYANSHYVTPRPTLNQAMKS 303 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IENYSRYLTGR PGEPP Sbjct: 304 IKMELAQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIENYSRYLTGRKPGEPP 363 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW Sbjct: 364 PTLFEYIPNNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 423 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +RP TI VSATPG WE+EQ G EQIIRPTGL+DPP E+R A QV+DV +EI Sbjct: 424 DAMRPQTIAVSATPGRWEIEQSHGTFAEQIIRPTGLIDPPTEVRPASNQVDDVVNEIRKT 483 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 Q+G R L+TVLTKRMAEDLTEYL+E++IRVRYMHS++ TLERIEI+RDLRLG FDVL+G Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQDIRVRYMHSDIDTLERIEILRDLRLGTFDVLIG 543 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT SI+ Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGSIE 603 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-QQLSLSK 757 A+ ET RRR+KQ+ +N++H+I P+S+K+ I ++++ E+ I+ D ++ ++ Sbjct: 604 RALQETQRRRQKQIAYNEEHHITPKSIKKNIGDILNS-GYENNHIRTITPDVIEKKNMVG 662 Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +H+K L K MH AA +LNFEEAAR+RDEIK+L+ Sbjct: 663 NNLASHIKHLEKLMHEAAADLNFEEAARLRDEIKQLQ 699 >gi|121602199|ref|YP_989264.1| excinuclease ABC subunit B [Bartonella bacilliformis KC583] gi|120614376|gb|ABM44977.1| excinuclease ABC, B subunit [Bartonella bacilliformis KC583] Length = 780 Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/700 (68%), Positives = 575/700 (82%), Gaps = 1/700 (0%) Query: 95 SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154 +E+ +T +V+AL+ LI S NPL KNG++WTPHR S+ T FQ++T + P+GDQP Sbjct: 58 TEKGVTATVEALSALIASGNPLFKNGELWTPHRPIR-PEKSESGTPFQIKTPFEPAGDQP 116 Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 AI L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK LAAQLY EFK Sbjct: 117 TAIETLVEGIKKNERTQVLLGVTGSGKTYTMAKIIEITQRPALILAPNKTLAAQLYGEFK 176 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 NFFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+ Sbjct: 177 NFFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVII 236 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V+SVSCIYGIGSVE+Y+ M Q+K GD + Q++LL+ LV QQY+RQDI +RG+FRV GD Sbjct: 237 VASVSCIYGIGSVETYTAMTFQIKKGDRLNQRQLLADLVAQQYQRQDINFVRGSFRVRGD 296 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 +IEIFP+HLED +WR+S+FG+++E I+EF PLTG+K ++++IKIYANSHYVTPRPTLN Sbjct: 297 TIEIFPAHLEDRSWRISLFGDEVETITEFDPLTGKKTDDLQSIKIYANSHYVTPRPTLNQ 356 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 A+K IK EL RL EL RLLEAQRLEQR +DLEMLETTGSC IENYSRYLTGR P Sbjct: 357 AIKSIKMELAARLDELNSADRLLEAQRLEQRTRFDLEMLETTGSCSGIENYSRYLTGRKP 416 Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514 GEPPPTLFEYIP+++L+F+DESHVTIPQISGMYRGDF RKATLAEYGFRLPSCMDNRPLR Sbjct: 417 GEPPPTLFEYIPDNALVFIDESHVTIPQISGMYRGDFRRKATLAEYGFRLPSCMDNRPLR 476 Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574 FEEW+ +RP TI VSATPG WE+EQ G EQ+IRPTGLVDP EIR ARTQV+DV E Sbjct: 477 FEEWDAMRPQTIAVSATPGRWEIEQTCGTFAEQVIRPTGLVDPLTEIRPARTQVDDVVHE 536 Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 I ++G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FD Sbjct: 537 IRTTIKKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGTFD 596 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694 VL+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT Sbjct: 597 VLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTIT 656 Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754 SI A+ ET RRR+KQ+++N+KH+I P SVK+ I ++++ + + +I Q + Sbjct: 657 GSIARALQETKRRRQKQIDYNQKHHIIPTSVKKNISDILNLVGDNNPIGKDIPNFVTQQN 716 Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + H+K L K M AA +LNFEEAAR+RD IK+L+ Sbjct: 717 RTGDTLTNHIKRLEKLMREAAADLNFEEAARLRDNIKQLQ 756 >gi|319405276|emb|CBI78890.1| excinuclease ABC, subunit B [Bartonella sp. AR 15-3] Length = 807 Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/699 (67%), Positives = 575/699 (82%), Gaps = 8/699 (1%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T +V+ L+ LI S NPL KNG +WTPHR I F Q++T + P+GDQP AI Sbjct: 59 VTATVETLSALIASSNPLFKNGALWTPHRPIRPEKSEGGIQF-QIKTSFQPAGDQPIAIK 117 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++GI +E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK LAAQLY EFKNFFP Sbjct: 118 SLVEGIKKKERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKNFFP 177 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +NAVEYFVSYYDYYQPEAYV R+DTYIEKE+SINEQIDRMRH+ATR++LER+D I+++SV Sbjct: 178 NNAVEYFVSYYDYYQPEAYVARSDTYIEKEASINEQIDRMRHAATRAVLERDDVIIIASV 237 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M Q++ G+ ++Q++LL+ LV QQY+RQDI +RG+FRV GD+IEI Sbjct: 238 SCIYGIGSVETYTAMTFQMQKGNKLDQQKLLTDLVAQQYQRQDINFVRGSFRVRGDTIEI 297 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+HLED AWR+S+FG++IE I+EF PLTGQK ++++IKIYANSHYV PRPTLN A+K Sbjct: 298 FPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLQSIKIYANSHYVIPRPTLNQAIKS 357 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IENYSRYLTGR PGEPP Sbjct: 358 IKIELTKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRKPGEPP 417 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PTLFEYIP +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW Sbjct: 418 PTLFEYIPNHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 477 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +RP TI VSATPG WE+EQ +GI VEQIIRPTGL+DPP EIR +TQV+DV +EI+ Sbjct: 478 DAMRPQTIAVSATPGHWEIEQSRGIFVEQIIRPTGLIDPPTEIRPVKTQVDDVINEIHQT 537 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIEI+RDLRLG FDVL+G Sbjct: 538 IKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIEILRDLRLGTFDVLIG 597 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV S+VILYAD IT SI+ Sbjct: 598 INLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVESRVILYADKITGSIE 657 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 A+ ET RRREKQ+ +N++H I P S+K+ I +++ + D NI I + ++ + K Sbjct: 658 RALQETKRRREKQIAYNEEHQITPTSIKKNIDDILSSVYENDH---NIKI-SHFITQNNK 713 Query: 759 KG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 G H++ L+K M AAD+LNFEEAA++RDEIKRL+ Sbjct: 714 VGDNLTNHIQHLKKLMRKAADDLNFEEAAQLRDEIKRLQ 752 >gi|319406846|emb|CBI80481.1| excinuclease ABC, subunit B [Bartonella sp. 1-1C] Length = 764 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/711 (66%), Positives = 578/711 (81%), Gaps = 3/711 (0%) Query: 85 SMSEKQTREISEQT-MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143 +++ K ++ I++ +T +V+AL+ LI S NPL KNG +WTPHR I F Q+ Sbjct: 44 TINTKPSKNITKTNGITATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGIPF-QI 102 Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203 +T + P+GDQP AI L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK Sbjct: 103 KTSFQPAGDQPIAIKSLVEGIKRNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNK 162 Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263 LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+AT Sbjct: 163 TLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAAT 222 Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 R++LER+D I+++SVSCIYGIGSVE+Y+ M Q++ GD ++Q++LL+ LV QQY+RQDI Sbjct: 223 RAVLERDDVIIIASVSCIYGIGSVETYTAMTFQMQKGDKLDQQKLLTDLVSQQYQRQDIN 282 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK ++++IKIYANS Sbjct: 283 FVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTADLQSIKIYANS 342 Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443 HYVTPRPTLN A+K IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IE Sbjct: 343 HYVTPRPTLNQAIKSIKMELVKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIE 402 Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503 NYSRYLTGR PGEPPPTLFEYIP +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFR Sbjct: 403 NYSRYLTGRKPGEPPPTLFEYIPSHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFR 462 Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563 LPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ QGI VEQ+IRPTGL+DPP EIR Sbjct: 463 LPSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQSQGIFVEQVIRPTGLIDPPTEIRP 522 Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 +TQV+D +EI+ ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIE Sbjct: 523 VKTQVDDAINEIHQTIKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIE 582 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 I+RDLRLG FDVL+GINLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV Sbjct: 583 ILRDLRLGTFDVLIGINLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVE 642 Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743 S+VILYADTIT SI+ A+ ET RRR+KQ+ +NK++ I P S+K+ I +++ E+ Sbjct: 643 SRVILYADTITGSIERALQETKRRRQKQIAYNKENQITPTSIKKNIDDILSS-AYENNHN 701 Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 IS Q + H++ L K M AA++LNFEEAA+ RDEIKRL+ Sbjct: 702 IKISHFITQNNKVGNNLTNHIQYLEKLMRKAANDLNFEEAAQFRDEIKRLQ 752 >gi|254504061|ref|ZP_05116212.1| excinuclease ABC, B subunit, putative [Labrenzia alexandrii DFL-11] gi|222440132|gb|EEE46811.1| excinuclease ABC, B subunit, putative [Labrenzia alexandrii DFL-11] Length = 1049 Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/702 (66%), Positives = 567/702 (80%), Gaps = 2/702 (0%) Query: 95 SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154 +Q T +V+AL+ LI+S NPL KNG++W PHR S+ + ++Y P GDQP Sbjct: 224 GKQGATATVEALSALIESGNPLHKNGELWVPHRP-DRPEKSEGGVPINLASEYEPKGDQP 282 Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 AIA+L+ GI S E+ Q+LLGVTGSGKT+TMA+VI+ QRPA+++APNK LAAQLY EFK Sbjct: 283 TAIAELVGGITSGEQTQVLLGVTGSGKTYTMAQVIQRTQRPALILAPNKTLAAQLYGEFK 342 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 +FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR+LLER+D I+ Sbjct: 343 SFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRALLERDDVII 402 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V+SVSCIYGIGSVE+Y+ M +++G+ ++Q++L++ LV QYKR D RGTFRV GD Sbjct: 403 VASVSCIYGIGSVETYTAMTFAIEVGERIDQRQLIADLVALQYKRNDAAFQRGTFRVRGD 462 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 +IE+FP+H ED AWR+S+FG++IE+I+EF PLTG+K +++++KIYANSHYVTP+PTL Sbjct: 463 TIELFPAHYEDRAWRISLFGDEIEQITEFDPLTGKKSGDMKSVKIYANSHYVTPKPTLQQ 522 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 A K IK ELK RL EL GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGR P Sbjct: 523 ATKSIKAELKGRLEELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRYLTGRKP 582 Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514 GEPPPTLFEY+P+++L+F DESHVTIPQI MYRGDF RKATLAEYGFRLPSCMDNRPLR Sbjct: 583 GEPPPTLFEYLPDNALVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLR 642 Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574 FEEWN +RP ++ VSATPGSWE+E+ G+ EQ+IRPTGL+DPPVEIR A +QV+D+ E Sbjct: 643 FEEWNAMRPQSVAVSATPGSWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAGSQVDDLLGE 702 Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 + AQ+G R L+T LTKRMAEDLTEYL+E +RVRYMHS++ TLERIEI+RDLRLG FD Sbjct: 703 VREVAQKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEILRDLRLGAFD 762 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694 VLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T Sbjct: 763 VLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMT 822 Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754 S++ AI ET RRR+KQL +N +H I P+SVK I +++ + +D T + A++ S Sbjct: 823 GSMERAIAETNRRRDKQLAYNTEHGITPESVKRSIGDIMQSVYEQDHVTVDAGF-AEEGS 881 Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 L AH+ L KQM AA +L+FE AAR+RDE+KRL+ + Sbjct: 882 LVGHNLAAHISDLEKQMRDAAADLDFETAARLRDEVKRLQET 923 >gi|13472362|ref|NP_103929.1| excinuclease ABC subunit B [Mesorhizobium loti MAFF303099] gi|81855589|sp|Q98I01|UVRB_RHILO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|14023108|dbj|BAB49715.1| excinuclease ABC subunit B [Mesorhizobium loti MAFF303099] Length = 870 Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/653 (70%), Positives = 553/653 (84%), Gaps = 1/653 (0%) Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M +D+ P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE QRPA+++APN Sbjct: 1 MVSDFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKVIEETQRPALILAPN 60 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSA Sbjct: 61 KTLAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSA 120 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TRSLLER+D I+V+SVSCIYGIGSVE+Y+ M Q++IGD ++Q+ LL+ LV QQYKRQDI Sbjct: 121 TRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYKRQDI 180 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK ++++KIYAN Sbjct: 181 NFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVKIYAN 240 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR +DLEMLE TGSC I Sbjct: 241 SHYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRTRFDLEMLEATGSCAGI 300 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF Sbjct: 301 ENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 360 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPLRFEEW+ +RP ++ VSATPG WE+EQ G+ EQ+IRPTGL+DPPVE+R Sbjct: 361 RLPSCMDNRPLRFEEWDAMRPLSVAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEVR 420 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A++QV+DV EI + G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI Sbjct: 421 PAKSQVDDVVGEIRETTKAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 480 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV Sbjct: 481 EILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 540 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + KVILYAD +T S++ A+ ET RRREKQ+E N + I P+SVK +I +++D + +D Sbjct: 541 DGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYEKDHV 600 Query: 743 TTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +IS ++ KAHL ++ KQM AA NL+FE+AARIRDEIKRL+ Sbjct: 601 RADISQFTDSAGAMMGNNLKAHLDAMEKQMRDAAANLDFEKAARIRDEIKRLR 653 >gi|304393621|ref|ZP_07375549.1| excinuclease ABC subunit B [Ahrensia sp. R2A130] gi|303294628|gb|EFL89000.1| excinuclease ABC subunit B [Ahrensia sp. R2A130] Length = 938 Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/722 (65%), Positives = 578/722 (80%), Gaps = 11/722 (1%) Query: 82 SSISMSEKQTREI-SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140 + + +S ++ E+ S +T +VQAL+ LI+ +K G IW PHR + D Sbjct: 125 AGLDVSAEEALEMASTSGVTATVQALSELIEHGRDEMK-GDIWVPHRP-DRPDKDPDQKP 182 Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSR-------EKVQLLLGVTGSGKTFTMAKVIEAMQ 193 F + +++ P GDQP AI +L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIE Q Sbjct: 183 FTVVSEFEPKGDQPTAIKELVGGLKSEAGSNQGGERTQVLLGVTGSGKTFTMAKVIEETQ 242 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPA+++APNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESS+NE Sbjct: 243 RPALILAPNKTLAAQLYGEMKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSVNE 302 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 QIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M Q+KIGD++ Q++LL+ LV Sbjct: 303 QIDRMRHSATRSLLERDDTIIVASVSCIYGIGSVETYTAMTFQMKIGDTLNQRQLLADLV 362 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QQYKR+D RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK N Sbjct: 363 AQQYKRRDADFQRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTDN 422 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 ++++KIYANSHYVTPRPTLN A+K IK EL RL EL + GR LEAQRLEQR+ +D+EM+ Sbjct: 423 LKSVKIYANSHYVTPRPTLNQAVKEIKLELTWRLEELTRAGRFLEAQRLEQRVKFDIEMI 482 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 E TGSC SIENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI GMYRGDF R Sbjct: 483 EATGSCASIENYSRYLTGRKPGEPPPTLFEYLPDNALVFADESHVTIPQIGGMYRGDFRR 542 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 KATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ G+ EQ+IRPTG Sbjct: 543 KATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTICVSATPGGWEMEQAGGVFAEQVIRPTG 602 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DPPVEIR+A+TQV+DV DEI + QG R L+TVLTKRMAEDLTEY++E+ I+VRYMH Sbjct: 603 LIDPPVEIRTAKTQVDDVVDEIKQVSAQGYRTLVTVLTKRMAEDLTEYMHEQGIKVRYMH 662 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ TLERIEIIRDLRLG FDVL+GINLLREGLDIPECGLV ILDADKEGFLRS+TSL+Q Sbjct: 663 SDIDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVTILDADKEGFLRSETSLVQ 722 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAARNV+ +VILYAD IT S++ A+ ET RRREKQ +N+KH I P S+K I +++ Sbjct: 723 TIGRAARNVDGRVILYADRITGSMERAMAETDRRREKQEAYNEKHGITPASIKRDISDIL 782 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + D + + A++ +L KAHL ++ K M AA +L+FE+AA +RDEIKRL Sbjct: 783 GSVYEGDHVRVDAGL-AKEGALVGNNMKAHLAAMEKDMRDAAADLDFEKAANLRDEIKRL 841 Query: 794 KS 795 ++ Sbjct: 842 QA 843 >gi|319898509|ref|YP_004158602.1| excinuclease ABC, subunit B [Bartonella clarridgeiae 73] gi|319402473|emb|CBI76016.1| excinuclease ABC, subunit B [Bartonella clarridgeiae 73] Length = 810 Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/696 (67%), Positives = 566/696 (81%), Gaps = 2/696 (0%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T +V+AL+ LI S NPL KNG +WTPHR I F Q++T + P+GDQP AI Sbjct: 62 VTATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGIPF-QIKTSFQPAGDQPNAIK 120 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++GI E+ Q+LLGVTGSGKT+TMAK+IE QRPA+++APNK LAAQLY EFKNFFP Sbjct: 121 SLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKNFFP 180 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+++SV Sbjct: 181 NNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIIASV 240 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M +Q++ GD + +++LL+ LV QQY+RQ+I +RG+FRV GD+IEI Sbjct: 241 SCIYGIGSVETYTAMTLQMQKGDKLNKQKLLTDLVAQQYQRQNINFVRGSFRVRGDTIEI 300 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+HLE+ AWR+S+F ++IE ++EF PLTGQK ++++IKIYANSHYVTPRPTLN A+K Sbjct: 301 FPAHLENRAWRISLFDDEIETLTEFDPLTGQKTGDLQSIKIYANSHYVTPRPTLNQAIKS 360 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK EL RL EL GRLLEAQRLEQR +DLEMLETTGSC IENYSRYLTGR PGEPP Sbjct: 361 IKMELVQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRKPGEPP 420 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PT+FEYIP +L+F+DESHVTIPQI GMYRGDF RKATL EYGFRLPSCMDNRPL FEEW Sbjct: 421 PTMFEYIPNHALVFIDESHVTIPQIGGMYRGDFRRKATLVEYGFRLPSCMDNRPLSFEEW 480 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +R TI VSATPG WE+EQ + I VEQIIRPTGL+DPP EIR A+TQV+DV +EI Sbjct: 481 DAMRSQTIAVSATPGRWEIEQSRNIFVEQIIRPTGLIDPPTEIRPAKTQVDDVVNEIRQT 540 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 ++G R L+TVLTK MAEDLTEYL+E+NIRVRYMHS++ TLERIEI+RDLRLG FDVLVG Sbjct: 541 IKKGYRTLITVLTKHMAEDLTEYLHEQNIRVRYMHSDINTLERIEILRDLRLGTFDVLVG 600 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG VAI DADKEGFLRS+TSLIQTIGRAARNV+S+VILYAD IT SI+ Sbjct: 601 INLLREGLDIPECGFVAIFDADKEGFLRSETSLIQTIGRAARNVDSRVILYADIITGSIE 660 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 A+ ET RRR+KQ+ +N++H I P S+K+ I + + + E+ NIS Q + Sbjct: 661 RALQETKRRRQKQIAYNEEHQITPTSIKKNIDDTLSSV-YENDYNINISHFITQNNRVGD 719 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 H++ L K M AAD+LNFEEAAR+RDEIK L+ Sbjct: 720 NLSNHIQHLEKLMRKAADDLNFEEAARLRDEIKLLQ 755 >gi|154246683|ref|YP_001417641.1| excinuclease ABC subunit B [Xanthobacter autotrophicus Py2] gi|154160768|gb|ABS67984.1| excinuclease ABC, B subunit [Xanthobacter autotrophicus Py2] Length = 866 Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/695 (65%), Positives = 563/695 (81%), Gaps = 3/695 (0%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 +VQAL++LI++ P + NG+ W PHR ++F M++D+ P+GDQP AIA+L Sbjct: 53 TVQALSQLIENGRPEV-NGQTWVPHRPPRPEKSEGGVSFI-MKSDFEPAGDQPQAIAELC 110 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 + E+ Q+LLGVTGSGKTFTMAKVIE +QRPAIV+APNK LAAQLY EFK+FFP NA Sbjct: 111 AQAQAGERDQVLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYGEFKSFFPDNA 170 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI Sbjct: 171 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 230 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+YS M +K+G+ ++Q+ LL+ LV QYKR RGTFRV GD +EIFP+ Sbjct: 231 YGIGSVETYSAMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPA 290 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWRVS+FG+++E I+EF PLTG K +++++++YA SHYVTPRPTL A+ IK Sbjct: 291 HYEDRAWRVSLFGDEVESIAEFDPLTGHKSGDMKSVRVYAASHYVTPRPTLIQAITGIKA 350 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELKMRL EL K GRLLEAQRLEQR YDLEM+E TGSC IENYSR+LTGR PGEPPPTL Sbjct: 351 ELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTGRKPGEPPPTL 410 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P++SL+F+DESHVT+PQI MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW + Sbjct: 411 FEYVPDNSLVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAM 470 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP T+ VSATPG+WE+E+ G+ VEQ+IRPTGL+DPPVE+R ARTQV+D+ E+ A + Sbjct: 471 RPQTVHVSATPGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAK 530 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINL Sbjct: 531 GYRTLVTVLTKRMAEDLTEYLHEHGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINL 590 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD +T S++ A+ Sbjct: 591 LREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRVTGSMERAM 650 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761 ET+RRREKQ+ +N H I P+SVK+ I ++++ + D + + A++ + K Sbjct: 651 AETSRRREKQVAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGL-AEEGAAFGHNLK 709 Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + L K+M AA +L+FE AAR+RDEI+RL+++ Sbjct: 710 AVMADLEKRMRAAAADLDFETAARLRDEIRRLEAT 744 >gi|323138209|ref|ZP_08073281.1| excinuclease ABC, B subunit [Methylocystis sp. ATCC 49242] gi|322396461|gb|EFX98990.1| excinuclease ABC, B subunit [Methylocystis sp. ATCC 49242] Length = 852 Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/696 (65%), Positives = 563/696 (80%), Gaps = 7/696 (1%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 + +LA L++ +P L++ K W PHR + F ++ +DY P GDQPAAIA+L+ Sbjct: 85 TADSLADLLRLGDPNLRDKKPWVPHRPERPEKSEGGVKF-ELVSDYTPKGDQPAAIAELV 143 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 KGI ++E+ Q+LLGVTGSGKTFTMA VI A QRPA+++APNK LAAQLY EFK+FFP+NA Sbjct: 144 KGIEAQERDQVLLGVTGSGKTFTMASVIAATQRPALILAPNKTLAAQLYGEFKSFFPNNA 203 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPR+DTYIEKESS+NEQIDRMRH+ATR+LLER+D I+V+SVSCI Sbjct: 204 VEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEQIDRMRHAATRALLERDDVIIVASVSCI 263 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M +++G+ +EQ++L++ LV Y+R RGTFRV GD++++FP+ Sbjct: 264 YGIGSVETYTAMTFSVQLGEKLEQRQLVTDLVALHYRRVQADFTRGTFRVRGDTVDVFPA 323 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWRVS FG+++E I EF PLTG+K ++E +KIYANSHYVTPRPTL ++K IK+ Sbjct: 324 HYEDRAWRVSFFGDEVESICEFDPLTGKKTVDLEFVKIYANSHYVTPRPTLLQSIKAIKD 383 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 EL+ RL EL + GRLLEAQRLEQR +DLEM+E TG+C IENYSRYLTGR PGEPPPTL Sbjct: 384 ELRARLDELNRSGRLLEAQRLEQRTRFDLEMMEATGACAGIENYSRYLTGRKPGEPPPTL 443 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+++L+F DESHV+IPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ + Sbjct: 444 FEYLPDNALVFADESHVSIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAM 503 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP T+ VSATPG+WELEQ G+ VEQ+IRPTGL+DPPVE+RSARTQV+D+ DE+ +Q Sbjct: 504 RPQTVSVSATPGNWELEQTGGVFVEQVIRPTGLIDPPVEVRSARTQVDDLLDEVRATSQI 563 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINL Sbjct: 564 GYRTLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINL 623 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S++ A+ Sbjct: 624 LREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADHITGSMKRAM 683 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-AQQLSLSKKKG 760 DET RRR KQ +N ++NI P S+K I +++ + +D T + D A +L+ Sbjct: 684 DETERRRAKQQAYNIENNITPASIKRGIADILGSVAEQDHVTVDTGFDIAPGHNLA---- 739 Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + L K+M A +L FEEAAR+RDEI+RL+ + Sbjct: 740 -ATIADLEKRMKEVAADLAFEEAARLRDEIQRLQKA 774 >gi|158424751|ref|YP_001526043.1| excinuclease ABC subunit B [Azorhizobium caulinodans ORS 571] gi|158331640|dbj|BAF89125.1| excinuclease ABC B subunit [Azorhizobium caulinodans ORS 571] Length = 876 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/695 (65%), Positives = 562/695 (80%), Gaps = 3/695 (0%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 +VQAL++LI++ P + NG+ W PHR I F M++D+ PSGDQP AI +L Sbjct: 53 TVQALSQLIENGRPEV-NGQTWVPHRPPRPEKSEGGIRFV-MKSDFQPSGDQPQAIKELT 110 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 + E+ Q+LLGVTGSGKTFTMAKVIE +QRPAIV+APNK LAAQLY EFK+FFP NA Sbjct: 111 EAARQGERDQVLLGVTGSGKTFTMAKVIETLQRPAIVLAPNKTLAAQLYGEFKSFFPDNA 170 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH+ATRSLLER+D I+V+SVSCI Sbjct: 171 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRSLLERDDVIIVASVSCI 230 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M +L++G+ ++Q++LL+ LV QYKR RGTFRV GD +EIFP+ Sbjct: 231 YGIGSVETYASMTFKLEVGERIDQRQLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPA 290 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWR+S+FG+++E I EF PLTG K +++++K+YA+SHYVTPRPTL A+ IK Sbjct: 291 HYEDRAWRISLFGDEVESIVEFDPLTGHKTGDMKSVKVYASSHYVTPRPTLIQAITGIKA 350 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELK RL EL K GRLLEAQRLEQR YD+EM+E TGSC IENYSR+LTGR PGEPPPTL Sbjct: 351 ELKHRLDELYKMGRLLEAQRLEQRTRYDIEMMEATGSCAGIENYSRWLTGRKPGEPPPTL 410 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+D+++F+DESHVT+PQI MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ + Sbjct: 411 FEYVPDDAMVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAM 470 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP T+ VSATPG WE+++ G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ A + Sbjct: 471 RPQTVHVSATPGPWEMDRTGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRATAAK 530 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINL Sbjct: 531 GYRSLVTVLTKRMAEDLTEYLHENGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINL 590 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD T S++ A+ Sbjct: 591 LREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADHETGSMKRAM 650 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761 ET RRREKQ+ +N +H I P+SVK+ I ++++ + D + + A++ + K Sbjct: 651 AETARRREKQIAYNTEHGITPESVKKAIGDILNSVYERDHVAVDSGL-AEEGAAFGHNLK 709 Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + L K+M AA +L+FEEAAR+RDEIKRL+++ Sbjct: 710 AIMADLEKRMRAAAADLDFEEAARLRDEIKRLQAT 744 >gi|46203067|ref|ZP_00052141.2| COG0556: Helicase subunit of the DNA excision repair complex [Magnetospirillum magnetotacticum MS-1] Length = 881 Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/703 (63%), Positives = 565/703 (80%), Gaps = 2/703 (0%) Query: 94 ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153 ++ + ++ +V+AL +L+ NPL KNG+ W PHR + F +++D+ P+GDQ Sbjct: 102 LATEGVSATVEALEKLLTEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLKSDFTPAGDQ 160 Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 P AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK LAAQLY EF Sbjct: 161 PTAIAALVEGVKTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEF 220 Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+LLER+D I Sbjct: 221 KSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRALLERDDVI 280 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 +V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR RGTFRV G Sbjct: 281 IVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRG 340 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D IE++P+HLED WR+ +FG+++E I EF PLTG+KI ++ +K+YANSHYVTPRPTL Sbjct: 341 DVIELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKKINELKFVKVYANSHYVTPRPTLQ 400 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C IENYSRYLTGR Sbjct: 401 QAIKGIKTELKLRVDELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSRYLTGRK 460 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513 PGEPPPTLFEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPL Sbjct: 461 PGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPL 520 Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573 RFEEW+ +RP ++ VSATPG WE+E+ G+ EQ+IRPTGLVDP +EIR AR+QV+D+ Sbjct: 521 RFEEWDAMRPQSVHVSATPGKWEMERTAGVFAEQVIRPTGLVDPVIEIRPARSQVDDLLG 580 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 E+ AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG F Sbjct: 581 EVRAVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAF 640 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 DVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++ ILYADTI Sbjct: 641 DVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEARCILYADTI 700 Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753 T S++ A+ ET RRR+KQL +N++H I PQSVK I ++++ + D + + + Sbjct: 701 TGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRVDTGLAKDAI 760 Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 761 TVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 802 >gi|188583725|ref|YP_001927170.1| excinuclease ABC subunit B [Methylobacterium populi BJ001] gi|179347223|gb|ACB82635.1| excinuclease ABC, B subunit [Methylobacterium populi BJ001] Length = 922 Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/703 (63%), Positives = 563/703 (80%), Gaps = 2/703 (0%) Query: 94 ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153 ++ + ++ +V+AL +L+ NPL KNG+ W PHR + F +++D+ P+GDQ Sbjct: 142 LATEGVSATVEALEKLLTEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLKSDFTPAGDQ 200 Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 P AIA L++G+ S E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK LAAQLY EF Sbjct: 201 PTAIAALVEGVKSAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEF 260 Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR+LLER+D I Sbjct: 261 KSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRALLERDDVI 320 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 +V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR RGTFRV G Sbjct: 321 IVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRG 380 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D IE++P+HLED WR+ +FG+++E I EF PLTG+K+ ++ +K+YANSHYVTPRPTL Sbjct: 381 DVIELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKKLNELKFVKVYANSHYVTPRPTLQ 440 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A+K IK ELK R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C IENYSRYLTGR Sbjct: 441 QAIKGIKTELKQRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSRYLTGRK 500 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513 PGEPPPTLFEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPL Sbjct: 501 PGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPL 560 Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573 RFEEW+ +RP ++ VSATP WE+E+ G+ EQ+IRPTGLVDP +EIR AR+QV+D+ Sbjct: 561 RFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPARSQVDDLLG 620 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 E+ AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG F Sbjct: 621 EVRAVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAF 680 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 DVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN +++ ILYADTI Sbjct: 681 DVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCILYADTI 740 Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753 T S++ A+ ET RRR+KQL +N +H I PQSVK I ++++ + D + + + Sbjct: 741 TGSMERAMAETERRRQKQLAYNAEHGITPQSVKRGIADILESVYERDHVRVDTGLAKDAI 800 Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 801 TVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 842 >gi|115526185|ref|YP_783096.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53] gi|115520132|gb|ABJ08116.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53] Length = 1023 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/682 (66%), Positives = 545/682 (79%), Gaps = 7/682 (1%) Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 K+WTPHR + F ++++Y P GDQP AI +L++GI+ ++ Q+LLGVTGSG Sbjct: 191 KLWTPHRPPRPEKTEGGVRFV-IKSEYEPKGDQPTAIKELVEGINRNDRTQVLLGVTGSG 249 Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 KT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPR Sbjct: 250 KTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPR 309 Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M LK G Sbjct: 310 TDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKG 369 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + ++Q++L++ LV QYKR RGTFRV GD I+IFP+H ED AWRV++FG+ +E I Sbjct: 370 ERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTVETI 429 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 EF PLTG K +E IKIYANSHYVTPRPTL AM+ IK ELKMRL EL +GRLLEAQ Sbjct: 430 EEFDPLTGHKQDELEFIKIYANSHYVTPRPTLIQAMQSIKSELKMRLDELHAQGRLLEAQ 489 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RLEQR T+D+EM+E TGSC IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+ Sbjct: 490 RLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVTV 549 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WEL + Sbjct: 550 PQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPSAWELNES 609 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ AQ+G R L+TVLTKRMAEDLTE Sbjct: 610 GGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAQKGFRSLVTVLTKRMAEDLTE 669 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YL+E+ +RVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDAD Sbjct: 670 YLHEQGVRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDAD 729 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS+TSLIQTIGRAARNV KVILYAD +T S+Q AIDET RRREKQ+E+N H I Sbjct: 730 KEGFLRSETSLIQTIGRAARNVEGKVILYADRMTGSMQRAIDETNRRREKQVEYNTAHGI 789 Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-GKAH-----LKSLRKQMHLA 774 P+S+K+ I ++++ + D I S S H L L +M A Sbjct: 790 TPESIKKSIGDILNSVYERDHVLVEIGGHGGAASWSDDAIAIGHNFETVLADLETRMREA 849 Query: 775 ADNLNFEEAARIRDEIKRLKSS 796 A +LNFEEAAR+RDE+KRL+++ Sbjct: 850 AADLNFEEAARLRDEVKRLRAT 871 >gi|170747239|ref|YP_001753499.1| excinuclease ABC subunit B [Methylobacterium radiotolerans JCM 2831] gi|170653761|gb|ACB22816.1| excinuclease ABC, B subunit [Methylobacterium radiotolerans JCM 2831] Length = 923 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/695 (63%), Positives = 557/695 (80%), Gaps = 2/695 (0%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 +V AL RL+ NPL K+GK WTPHR + F +++D+ P+GDQP AIA+L+ Sbjct: 143 TVTALERLLTEGNPLFKDGKTWTPHRPERPQKSEGGVRF-TLKSDFTPAGDQPRAIAELV 201 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 G+ + E+ Q+LLGVTGSGKTFTMAK+IE QRPA+++APNK LAAQLY EFK FFP NA Sbjct: 202 GGVQALERDQVLLGVTGSGKTFTMAKIIEETQRPALILAPNKTLAAQLYGEFKAFFPDNA 261 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI Sbjct: 262 VEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 321 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR RGTFRV GDSIE++P+ Sbjct: 322 YGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRGDSIELWPA 381 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 HLED WR+ +FG+++E I EF PLTG+ I ++ +K+YANSHYVTPRPTL A+K IK Sbjct: 382 HLEDRGWRIGLFGDEVESIVEFDPLTGKTISELKFVKVYANSHYVTPRPTLQQAIKGIKH 441 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELK R+ EL K GRL+EAQR++QR T+D+EM+E TG+C IENYSRYLTGR PGEPPPTL Sbjct: 442 ELKGRIEELTKMGRLIEAQRIDQRCTFDIEMIEATGACNGIENYSRYLTGRKPGEPPPTL 501 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+ + Sbjct: 502 FEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAM 561 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP T+ VSATPG WE+EQ G+ EQ+IRPTGLVDP +E+R AR+QV+D+ E+ AQ Sbjct: 562 RPQTVHVSATPGKWEMEQTGGVFAEQVIRPTGLVDPVIEVRPARSQVDDLLGEVREVAQA 621 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG FDVL+GINL Sbjct: 622 GYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAFDVLIGINL 681 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN +++ ILYAD+IT S++ A+ Sbjct: 682 LREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCILYADSITGSMERAM 741 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761 ET RRR KQL +N++H I PQSVK I +++ + D + + +++ K Sbjct: 742 AETERRRAKQLAYNEEHGITPQSVKRGIADILSSVFERDHVQVDTGLAKDAITVGHNL-K 800 Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 801 AVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 835 >gi|148253310|ref|YP_001237895.1| excinuclease ABC subunit B [Bradyrhizobium sp. BTAi1] gi|146405483|gb|ABQ33989.1| Excinuclease ABC subunit B [Bradyrhizobium sp. BTAi1] Length = 1058 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/709 (64%), Positives = 560/709 (78%), Gaps = 23/709 (3%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + +AL LI+ P + K+WTPHR + + F ++++ Y P GDQP AI Sbjct: 188 TAEALEALIREGRPEFRRDDGSLKLWTPHRPPRPDKSEGGVRF-EIKSAYEPKGDQPQAI 246 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 A+L++GI+ ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF Sbjct: 247 AELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 306 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 307 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 366 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD ++ Sbjct: 367 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQHDFTRGTFRVRGDVVD 426 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV++FG+ +E I EF PLTG K +E IK+YANSHYVTPRPTL A+K Sbjct: 427 IFPAHYEDRAWRVNLFGDTVENIEEFDPLTGHKQDELEFIKVYANSHYVTPRPTLVQAIK 486 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK+RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 487 SIKHELKIRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 546 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 547 PPTLFEYVPDNALVFADESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 606 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP T+ VSATPG WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 607 WDMMRPQTVAVSATPGGWELNEAGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRA 666 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 667 TAQKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 726 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 727 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 786 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLEDAATTN----IS 747 + AI ET RRREKQ+E+N H I P+SVK+ I +++ D +L+E T IS Sbjct: 787 ERAIAETNRRREKQVEYNTAHGITPESVKKSIGDILNSVYERDHVLVETGGGTTTDDVIS 846 Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 I ++ L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 847 IGHNFETV--------LADLETRMREAAADLNFEEAARLRDEVKRLRAT 887 >gi|75676679|ref|YP_319100.1| excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255] gi|74421549|gb|ABA05748.1| Excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255] Length = 1032 Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/705 (64%), Positives = 558/705 (79%), Gaps = 11/705 (1%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + ++L L++ P K G K+WTPHR S+ F+++++Y P GDQP AI Sbjct: 192 TAESLEALLRDGRPEFKTGDGSLKLWTPHRP-PRPEKSEGGVRFEIKSEYQPKGDQPQAI 250 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF Sbjct: 251 RELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 310 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 311 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 370 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD+I+ Sbjct: 371 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDTID 430 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV++FG+++E I EF PLTG K ++ IK+Y+NSHYVTPRPTL A+K Sbjct: 431 IFPAHYEDRAWRVNLFGDEVESIEEFDPLTGHKQDELDFIKVYSNSHYVTPRPTLVQAIK 490 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL EL +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEP Sbjct: 491 NIKVELKQRLDELHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEP 550 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 551 PPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 610 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP TI VSATPG+WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 611 WDMMRPQTIAVSATPGAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 670 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 671 TAAKGYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 730 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV +VILYAD +T S+ Sbjct: 731 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADQVTGSM 790 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 Q +I ET RRREKQ+E+N H I P+S+K+ I ++++ + D I + S S Sbjct: 791 QRSIAETDRRREKQVEYNTAHGITPESIKKSIGDILNSVYERDHVLVEIGDGGKGNSWSD 850 Query: 758 K------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 851 DAIAIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRAT 895 >gi|146342818|ref|YP_001207866.1| excinuclease ABC subunit B [Bradyrhizobium sp. ORS278] gi|146195624|emb|CAL79651.1| putative UvrABC system, protein B (UvrB, Excinuclease ABC subunit B) [Bradyrhizobium sp. ORS278] Length = 1052 Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/705 (64%), Positives = 557/705 (79%), Gaps = 15/705 (2%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + +AL LI+ P + K+WTPHR + F ++++ Y P GDQP AI Sbjct: 177 TAEALESLIREGRPEFRKDDGSLKVWTPHRPPRPEKSEGGVRF-EIKSAYEPKGDQPQAI 235 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++G+ ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF Sbjct: 236 KELVEGVARNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 295 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 296 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 355 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 356 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQHDFTRGTFRVRGDVID 415 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV++FG+ +E I EF PLTG K +E IK+YANSHYVTPRPTL AMK Sbjct: 416 IFPAHYEDRAWRVNLFGDTVENIEEFDPLTGHKQDELEFIKVYANSHYVTPRPTLVQAMK 475 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK+RL +L +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEP Sbjct: 476 SIKHELKIRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEP 535 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 536 PPTLFEYVPDNALVFADESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 595 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP T+ VSATPG WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 596 WDMMRPQTVAVSATPGGWELNEAGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRA 655 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 656 TAQKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 715 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 716 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSM 775 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLEDAATTNISIDAQ 751 + A+ ET RRREKQ+E+N H I P+SVK+ I +++ D +L+E T Sbjct: 776 ERAMAETARRREKQVEYNTAHGITPESVKKSIGDILNSVYERDHVLIETGGGTTTD---D 832 Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +S+ +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 833 VISIGHNF-EAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 876 >gi|86751253|ref|YP_487749.1| excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2] gi|86574281|gb|ABD08838.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2] Length = 1017 Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/707 (64%), Positives = 555/707 (78%), Gaps = 16/707 (2%) Query: 102 SVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + +AL LI+ P K N K+W PHR + F +++DY P GDQP AI Sbjct: 191 TAEALEALIRDGRPEFKGDDGNVKLWVPHRPPRPEKSEGGVRFV-IKSDYEPKGDQPTAI 249 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF Sbjct: 250 KELVEGIARNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 309 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S Sbjct: 310 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 369 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q+ L++ LV QYKR RGTFRV GD I+ Sbjct: 370 VSCIYGIGSVETYTAMTFALKKGERIDQRALIADLVALQYKRTQADFTRGTFRVRGDVID 429 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV MFG+++E I EF PLTG K +E +KIYANSHYVTPRPTL A+K Sbjct: 430 IFPAHYEDRAWRVKMFGDEVEAIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIK 489 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 490 SIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 549 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 550 PPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 609 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP ++ VSATP +WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 610 WDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 669 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 670 TANAGYRSLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 729 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 730 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADHVTGSM 789 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLE--DAATTNISID 749 Q A+DET RRREKQ+E+N H I P+S+K+ I +++ D +L+E D + + D Sbjct: 790 QRAMDETGRRREKQIEYNTAHGITPESIKKSIGDILGSVYERDHVLVEIGDGKGSGFTDD 849 Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 850 AAVIG---HNFGAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 893 >gi|254470279|ref|ZP_05083683.1| excinuclease ABC, B subunit, putative [Pseudovibrio sp. JE062] gi|211960590|gb|EEA95786.1| excinuclease ABC, B subunit, putative [Pseudovibrio sp. JE062] Length = 946 Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/700 (64%), Positives = 553/700 (79%), Gaps = 8/700 (1%) Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159 T +VQALARLI+ W PHR + F +++++ P GDQP AIA Sbjct: 156 TATVQALARLIEQGRSDETGEDAWVPHRPERPQKSEGGVAF-SLESEFEPKGDQPTAIAD 214 Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L G+ +K Q+LLGVTGSGKTFTMA++I QRPA+++APNK LAAQLY EFK FFP+ Sbjct: 215 LKAGLADGDKTQVLLGVTGSGKTFTMAQLISQTQRPALILAPNKTLAAQLYGEFKAFFPN 274 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 NAVEYFVSYYDYYQPEAYV RTDT+IEKESSINEQIDRMRHSATR+LLER+D I+V+SVS Sbjct: 275 NAVEYFVSYYDYYQPEAYVARTDTFIEKESSINEQIDRMRHSATRALLERDDVIIVASVS 334 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 CIYGIGSVE+Y+ M +L++G+ +EQ++LL+ LV YKR D RGTFRV GD+IE+F Sbjct: 335 CIYGIGSVETYTAMTFKLEVGEKIEQRQLLADLVALHYKRNDAAFQRGTFRVRGDTIEVF 394 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P+H ED AWR+S++G++IE I+EF PLTG+K ++ +KIYANSHYVTP+PTLN A+K I Sbjct: 395 PAHYEDRAWRISLWGDEIESITEFDPLTGKKSGELQLVKIYANSHYVTPKPTLNQAIKSI 454 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 K+ELK RL EL + GRLLEAQRL+QR T+DLEM+E TG+C IENYSRYLTGR PGEPPP Sbjct: 455 KKELKHRLDELNEHGRLLEAQRLDQRCTFDLEMMEATGACAGIENYSRYLTGRAPGEPPP 514 Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519 TLFEY+P+++L+F+DESHVT+PQI MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ Sbjct: 515 TLFEYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWD 574 Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 +RP T+ VSATPG WE+++ G+ EQ+IRPTGL DP +EIR A+TQV+D+ E+ A Sbjct: 575 AMRPQTVAVSATPGGWEMDESGGVFAEQVIRPTGLTDPDIEIRPAKTQVDDLLGEVREKA 634 Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 G R L+T LTKRMAEDLTEYL+E +RVRYMHS++ TLERIEIIRDLRLG FDVL+GI Sbjct: 635 ANGFRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLIGI 694 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 NLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD +T S++ Sbjct: 695 NLLREGLDIPECALVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADNMTGSMER 754 Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759 AI ET RRR KQ +N++H I P+SVK I ++++ + +D ++S+DA Sbjct: 755 AIAETNRRRAKQEAYNEEHGITPESVKRSIGDILESVYEQD----HVSVDAGFAEEGATI 810 Query: 760 G---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 G KAH++ L KQM AA +L FE AAR+RDE+KRL+ + Sbjct: 811 GHNLKAHIEDLEKQMREAAADLEFETAARLRDEVKRLQET 850 >gi|163853453|ref|YP_001641496.1| excinuclease ABC subunit B [Methylobacterium extorquens PA1] gi|163665058|gb|ABY32425.1| excinuclease ABC, B subunit [Methylobacterium extorquens PA1] Length = 908 Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/712 (62%), Positives = 569/712 (79%), Gaps = 2/712 (0%) Query: 85 SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144 + ++ +T ++ + ++ +V+AL RL+ NPL KNG+ W PHR + F ++ Sbjct: 119 TAADAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 177 Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK Sbjct: 178 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 237 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR Sbjct: 238 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 297 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER+D I+V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR Sbjct: 298 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 357 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFRV GD IE++P+HLED WR+ +FG++IE I EF PLTG+K+ ++ +K+YANSH Sbjct: 358 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSH 417 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPRPTL A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C IEN Sbjct: 418 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 477 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYGFRL Sbjct: 478 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYGFRL 537 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSC+DNRPLRFEEW+ +RP ++ VSATP WE+E+ G+ EQ+IRPTGLVDP +EIR A Sbjct: 538 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 597 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 R+QV+D+ E+ AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI Sbjct: 598 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 657 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++ Sbjct: 658 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 717 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK I ++++ + D Sbjct: 718 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 777 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + +++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 778 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 828 >gi|90425612|ref|YP_533982.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18] gi|90107626|gb|ABD89663.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18] Length = 1053 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/705 (65%), Positives = 553/705 (78%), Gaps = 11/705 (1%) Query: 102 SVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + AL LI+ P K N K+WTPHR + F ++++Y P GDQP AI Sbjct: 192 TADALENLIRDGRPEFKGEDGNVKLWTPHRPPRPEKTEGGVRFV-IKSEYEPKGDQPTAI 250 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF Sbjct: 251 KELVEGISRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 310 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 311 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 370 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q+ L++ LV QYKR RGTFRV GD I+ Sbjct: 371 VSCIYGIGSVETYTAMTFALKKGERIDQRALIADLVALQYKRTQADFTRGTFRVRGDVID 430 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV++FG+ +E I EF PLTG K +E IKIYANSHYVTPRPTL A+K Sbjct: 431 IFPAHYEDRAWRVNLFGDTVETIEEFDPLTGHKQDELEFIKIYANSHYVTPRPTLLQAIK 490 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 491 SIKAELKWRLDQLNDQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 550 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 551 PPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 610 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP ++ VSATP +WEL + G+ VEQ+IRPTGL+DPPV IR ARTQV+D+ E+ Sbjct: 611 WDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLVGEVRA 670 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 671 TAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 730 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S+ Sbjct: 731 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADRITGSM 790 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 + AI ET RRREKQ+E+N +HNI P+S+K+ I ++++ + D I Q S S Sbjct: 791 ERAIAETDRRREKQVEYNTEHNITPESIKKSIGDILNSVYERDHVLVEIGGGGQGGSWSD 850 Query: 758 KKGK-AH-----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 G H L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 851 DVGAIGHNFETVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 895 >gi|240140873|ref|YP_002965353.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B) [Methylobacterium extorquens AM1] gi|240010850|gb|ACS42076.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B) [Methylobacterium extorquens AM1] Length = 908 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/712 (62%), Positives = 568/712 (79%), Gaps = 2/712 (0%) Query: 85 SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144 + + +T ++ + ++ +V+AL RL+ NPL KNG+ W PHR + F ++ Sbjct: 119 TAPDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 177 Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK Sbjct: 178 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 237 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR Sbjct: 238 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 297 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER+D I+V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR Sbjct: 298 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 357 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFRV GD IE++P+HLED WR+ +FG++IE I EF PLTG+K+ ++ +KIYANSH Sbjct: 358 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKIYANSH 417 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPRPTL A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C IEN Sbjct: 418 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 477 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYGFRL Sbjct: 478 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYGFRL 537 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSC+DNRPLRFEEW+ +RP ++ VSATP WE+E+ G+ EQ+IRPTGLVDP +EIR A Sbjct: 538 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 597 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 R+QV+D+ E+ AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI Sbjct: 598 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 657 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++ Sbjct: 658 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 717 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK I ++++ + D Sbjct: 718 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 777 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + +++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 778 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 828 >gi|209886295|ref|YP_002290152.1| excinuclease ABC subunit B [Oligotropha carboxidovorans OM5] gi|209874491|gb|ACI94287.1| excinuclease ABC subunit B [Oligotropha carboxidovorans OM5] Length = 981 Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/698 (65%), Positives = 555/698 (79%), Gaps = 5/698 (0%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 + +AL LI+ P + KIWTPHR S+ +++++Y P GDQP AI +L+ Sbjct: 154 TAEALEALIRDGRPEFRGDKIWTPHRP-PRPEKSEGGVRLELKSEYEPKGDQPQAIKELV 212 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 +GI+ +++ Q+LLGVTGSGKT+TMA+VI A QRPA+++APNK LAAQLY EFKNFFP NA Sbjct: 213 EGINRQDRTQVLLGVTGSGKTYTMAQVIAATQRPALILAPNKTLAAQLYGEFKNFFPDNA 272 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+SVSCI Sbjct: 273 VEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVASVSCI 332 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M +K G+ ++Q+++++ LV QYKR RGTFRV GD+I+IFP+ Sbjct: 333 YGIGSVETYTAMTFAMKKGERIDQRQIIADLVALQYKRTSADFTRGTFRVRGDTIDIFPA 392 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWRV++FG+ IE I EF PLTG K +E +KIYANSHYVTPRPTL A+K IK Sbjct: 393 HYEDRAWRVNLFGDTIESIEEFDPLTGHKSDELEFVKIYANSHYVTPRPTLIQAIKNIKT 452 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELK RL +L +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEPPPTL Sbjct: 453 ELKWRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRKPGEPPPTL 512 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ + Sbjct: 513 FEYVPDNALVFTDESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMM 572 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP ++ VSATP +WELEQ G+ VEQ+IRPTGL+DPPV IR ARTQV+D+ E+ A+ Sbjct: 573 RPQSVAVSATPAAWELEQSGGVFVEQVIRPTGLIDPPVHIRPARTQVDDLVGEVRETARN 632 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINL Sbjct: 633 GYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINL 692 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S++ AI Sbjct: 693 LREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQITGSMERAI 752 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG- 760 ET RRREKQ+ +N+ H I P+SVK+ I ++++ + D + D + G Sbjct: 753 AETDRRREKQVAYNEAHGITPESVKKSIGDILNSVYERDHVLVEVG-DGGMADDTVAIGH 811 Query: 761 --KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 812 NFETVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 849 >gi|218532313|ref|YP_002423129.1| excinuclease ABC subunit B [Methylobacterium chloromethanicum CM4] gi|218524616|gb|ACK85201.1| excinuclease ABC, B subunit [Methylobacterium chloromethanicum CM4] Length = 916 Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/712 (62%), Positives = 568/712 (79%), Gaps = 2/712 (0%) Query: 85 SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144 + + +T ++ + ++ +V+AL RL+ NPL KNG+ W PHR + F ++ Sbjct: 127 TAPDGETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 185 Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK Sbjct: 186 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 245 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR Sbjct: 246 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 305 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER+D I+V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR Sbjct: 306 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 365 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFRV GD IE++P+HLED WR+ +FG++IE I EF PLTG+K+ ++ +K+YANSH Sbjct: 366 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSH 425 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPRPTL A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C IEN Sbjct: 426 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 485 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYGFRL Sbjct: 486 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYGFRL 545 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSC+DNRPLRFEEW+ +RP ++ VSATP WE+E+ G+ EQ+IRPTGLVDP +EIR A Sbjct: 546 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 605 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 R+QV+D+ E+ AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI Sbjct: 606 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 665 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++ Sbjct: 666 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 725 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK I ++++ + D Sbjct: 726 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 785 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + +++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 786 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 836 >gi|91978448|ref|YP_571107.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5] gi|91684904|gb|ABE41206.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5] Length = 1047 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/707 (64%), Positives = 556/707 (78%), Gaps = 16/707 (2%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + +AL LI+ P K K+W PHR + F ++++Y P GDQP AI Sbjct: 221 TAEALENLIREGRPEFKGDDGGVKLWVPHRPPRPEKSEGGVRFV-IKSEYEPKGDQPTAI 279 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF Sbjct: 280 KELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 339 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S Sbjct: 340 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 399 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 400 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVID 459 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV +FG+ +E I EF PLTG K +E +KIYANSHYVTPRPTL A+K Sbjct: 460 IFPAHYEDRAWRVGLFGDTVETIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIK 519 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 520 SIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 579 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 580 PPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 639 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP ++ VSATP +WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 640 WDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 699 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 700 TAQAGYRSLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 759 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 760 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADHVTGSM 819 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLE--DAATTNISID 749 Q A+DET RRREKQ+E+N H I P+S+K+ I +++ D +L+E D + + D Sbjct: 820 QRAMDETGRRREKQIEYNTAHGITPESIKKSIGDILGSVYERDHVLVEIGDGKGSGFTDD 879 Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + + A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 880 AAVIGHNF---GAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 923 >gi|220924991|ref|YP_002500293.1| excinuclease ABC subunit B [Methylobacterium nodulans ORS 2060] gi|219949598|gb|ACL59990.1| excinuclease ABC, B subunit [Methylobacterium nodulans ORS 2060] Length = 934 Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/711 (63%), Positives = 559/711 (78%), Gaps = 2/711 (0%) Query: 86 MSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145 ++E + ++ Q ++ +V AL +L+ NPL K+GK W PHR + F ++++ Sbjct: 131 LAEDKQTSLAAQGVSATVDALTKLLTEGNPLFKHGKPWVPHRPERPQKSEGGVPF-RLKS 189 Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205 D+ P+GDQP AIA L++G+ E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK L Sbjct: 190 DFTPAGDQPKAIADLVEGVRRSERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTL 249 Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 AAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+ Sbjct: 250 AAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRA 309 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 LLER+D I+V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR Sbjct: 310 LLERDDVIIVASVSCIYGIGSVETYTAMSFTVTLGERIEQRQLIADLVALQYKRVQSDFA 369 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 RGTFRV GD IE++P+HLED WR+ +FG+++E I+EF PLTG+ + ++ +KIYANSHY Sbjct: 370 RGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVEAITEFDPLTGKTVNPLKFVKIYANSHY 429 Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445 VTPRPTL A+K IK+ELK R+ EL + GRL+EAQRLEQR T+DLEM+E TGSC IENY Sbjct: 430 VTPRPTLQQAVKGIKDELKWRVEELTRMGRLIEAQRLEQRCTFDLEMIEATGSCNGIENY 489 Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505 SRYLTGR PGEPPPTLFEY+P+++L+F DESHVTI QI GMYRGDF RKATLAEYGFRLP Sbjct: 490 SRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTISQIGGMYRGDFRRKATLAEYGFRLP 549 Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565 SC+DNRPLRFEEW+ +RP ++ VSATP WELEQ G+ VEQ+IRPTGLVDP V IR AR Sbjct: 550 SCLDNRPLRFEEWDAMRPQSVHVSATPAKWELEQTGGVFVEQVIRPTGLVDPEVIIRPAR 609 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 +QV+D+ E+ AQ G R L+T LTKRMAEDLTEYL+E +RVRYMHS++ TLERIEII Sbjct: 610 SQVDDLLGEVKAVAQAGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEII 669 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN + Sbjct: 670 RDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEGR 729 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745 VILYAD T S+ AI ET RRR KQL +N +H I PQSVK I ++++ + D + Sbjct: 730 VILYADQRTGSMDRAIAETERRRAKQLAYNAEHGITPQSVKRNIADILESVYERDHVQVD 789 Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + +++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 790 TGLAKGAVTVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 839 >gi|316935859|ref|YP_004110841.1| excinuclease ABC subunit B [Rhodopseudomonas palustris DX-1] gi|315603573|gb|ADU46108.1| excinuclease ABC, B subunit [Rhodopseudomonas palustris DX-1] Length = 1020 Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/705 (64%), Positives = 550/705 (78%), Gaps = 12/705 (1%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + AL LI+ P K K+W PHR + F +++DY P GDQP AI Sbjct: 157 TADALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVRFV-LKSDYQPRGDQPQAI 215 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF Sbjct: 216 KELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 275 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 276 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 335 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 336 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVID 395 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV MFG++IE I EF PLTG K +E +KIYANSHYVTPRPTL A+ Sbjct: 396 IFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIS 455 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 456 SIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 515 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHV++PQI M++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 516 PPTLFEYVPDNALVFADESHVSVPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 575 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP T+ VSATP +WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 576 WDMMRPQTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 635 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 636 TAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 695 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S+ Sbjct: 696 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQITGSM 755 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 Q +IDET RRREKQ+E+N H I P+SVK+ I ++++ + D I D + + Sbjct: 756 QRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIG-DGKGAGFTD 814 Query: 758 KKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 815 DAAVIGHNFEAVLADLESRMREAAADLNFEEAARLRDEVKRLRAT 859 >gi|192293183|ref|YP_001993788.1| excinuclease ABC subunit B [Rhodopseudomonas palustris TIE-1] gi|192286932|gb|ACF03313.1| excinuclease ABC, B subunit [Rhodopseudomonas palustris TIE-1] Length = 1011 Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/705 (64%), Positives = 552/705 (78%), Gaps = 12/705 (1%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + +AL LI+ P K K+W PHR + F +++DY P GDQP AI Sbjct: 158 TAEALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVRFV-LKSDYQPRGDQPTAI 216 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++G+ ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF Sbjct: 217 KELVEGLDRSDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 276 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 277 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 336 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 337 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVID 396 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV MFG++IE I EF PLTG K +E +KIYANSHYVTPRPTL A++ Sbjct: 397 IFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIQ 456 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 457 SIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 516 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHV+IPQI M++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 517 PPTLFEYVPDNALVFADESHVSIPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 576 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP T+ VSATP +WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 577 WDMMRPQTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 636 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 637 TAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 696 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 697 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 756 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 Q +IDET RRREKQ+E+N H I P+SVK+ I ++++ + D I D + + Sbjct: 757 QRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIG-DGKGAGFTD 815 Query: 758 KKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 816 DAAVIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 860 >gi|254563382|ref|YP_003070477.1| UvrABC system protein B [Methylobacterium extorquens DM4] gi|254270660|emb|CAX26664.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B) [Methylobacterium extorquens DM4] Length = 908 Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/712 (62%), Positives = 567/712 (79%), Gaps = 2/712 (0%) Query: 85 SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144 + + +T ++ + ++ +V+AL RL+ NPL KNG+ W PHR + F ++ Sbjct: 119 TAPDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 177 Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK Sbjct: 178 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 237 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR Sbjct: 238 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 297 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER+D I+V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR Sbjct: 298 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 357 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFRV GD IE++P+HLED WR+ +FG++IE I EF PLTG+K+ ++ +K+YANSH Sbjct: 358 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSH 417 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPRPTL A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C IEN Sbjct: 418 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 477 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+ DF RKATLAEYGFRL Sbjct: 478 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKSDFRRKATLAEYGFRL 537 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSC+DNRPLRFEEW+ +RP ++ VSATP WE+E+ G+ EQ+IRPTGLVDP +EIR A Sbjct: 538 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 597 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 R+QV+D+ E+ AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI Sbjct: 598 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 657 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++ Sbjct: 658 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 717 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK I ++++ + D Sbjct: 718 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 777 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + +++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 778 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 828 >gi|299134277|ref|ZP_07027470.1| excinuclease ABC, B subunit [Afipia sp. 1NLS2] gi|298591024|gb|EFI51226.1| excinuclease ABC, B subunit [Afipia sp. 1NLS2] Length = 959 Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/697 (64%), Positives = 556/697 (79%), Gaps = 3/697 (0%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 + AL LI+ P + KIWTPHR S+ F+++++Y P GDQP AIA+L+ Sbjct: 142 TADALESLIKEGRPEFRGDKIWTPHRP-PRPEKSEGGVRFELKSEYQPKGDQPQAIAELV 200 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 +GI+ +++ Q+LLGVTGSGKT+TMA+VI A QRPA+++APNK LAAQLY EFK+FFP NA Sbjct: 201 EGINRKDRTQVLLGVTGSGKTYTMAQVIAATQRPALILAPNKTLAAQLYGEFKSFFPDNA 260 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+SVSCI Sbjct: 261 VEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVASVSCI 320 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M LK G+ ++Q+++++ LV QYKR RGTFRV GD+I+IFP+ Sbjct: 321 YGIGSVETYTAMTFSLKKGERIDQRQIIADLVALQYKRTQADFARGTFRVRGDTIDIFPA 380 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWRV++FG+++E I EF PLTG K +E +KIYANSHYVTPRPTL A+K IK Sbjct: 381 HYEDRAWRVNLFGDEVESIEEFDPLTGHKSDELEFVKIYANSHYVTPRPTLIQAIKGIKS 440 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELK RL +L +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEPPPTL Sbjct: 441 ELKWRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRKPGEPPPTL 500 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+++L+F DESHVTIPQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ + Sbjct: 501 FEYVPDNALVFADESHVTIPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMM 560 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP ++ VSATP +WE+ + G+ VEQ+IRPTGL+DPPV IR ARTQV+D+ E+ A + Sbjct: 561 RPQSVAVSATPAAWEMNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLLGEVRATAAK 620 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINL Sbjct: 621 GYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINL 680 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ AI Sbjct: 681 LREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSMERAI 740 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID--AQQLSLSKKK 759 ET RRREKQ+ +N+ + I P+SVK+ I ++++ + D + A + Sbjct: 741 AETDRRREKQVAYNEANGITPESVKKSIGDILNSVYERDHVLVEVGDGGMADDVISIGHN 800 Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 801 FEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 837 >gi|39937403|ref|NP_949679.1| excinuclease ABC subunit B [Rhodopseudomonas palustris CGA009] gi|39651262|emb|CAE29784.1| possible excinuclease ABC subunit B [Rhodopseudomonas palustris CGA009] Length = 862 Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/705 (64%), Positives = 552/705 (78%), Gaps = 12/705 (1%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + +AL LI+ P K K+W PHR + F +++DY P GDQP AI Sbjct: 9 TAEALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVRFV-LKSDYQPRGDQPTAI 67 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF Sbjct: 68 KELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 127 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 128 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 187 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 188 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVID 247 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV MFG++IE I EF PLTG K +E +KIYANSHYVTPRPTL A++ Sbjct: 248 IFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIQ 307 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGR PGEP Sbjct: 308 SIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 367 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHV+IPQI M++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 368 PPTLFEYVPDNALVFADESHVSIPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 427 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP T+ VSATP +WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 428 WDMMRPPTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 487 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 488 TAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 547 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 548 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 607 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 Q +IDET RRREKQ+E+N H I P+SVK+ I ++++ + D I D + + Sbjct: 608 QRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIG-DGKGAGFTD 666 Query: 758 KKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 667 DAAVIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 711 >gi|92118421|ref|YP_578150.1| excinuclease ABC subunit B [Nitrobacter hamburgensis X14] gi|91801315|gb|ABE63690.1| Excinuclease ABC subunit B [Nitrobacter hamburgensis X14] Length = 1011 Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/702 (64%), Positives = 557/702 (79%), Gaps = 9/702 (1%) Query: 102 SVQALARLIQSDNPLLK--NG--KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + ++L L++ P + NG K+WTPHR + F ++++Y P GDQP AI Sbjct: 178 TAESLEALLRDGRPEFRGDNGAMKVWTPHRPPRPEKSEGGVRFV-IKSEYEPKGDQPTAI 236 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI+ ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF Sbjct: 237 KELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 296 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S Sbjct: 297 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 356 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M L+ G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 357 VSCIYGIGSVETYTAMTFALRRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDVID 416 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED +WRV++FG+++E I EF PLTG K +E IK+Y+NSHYVTPRPTL A+K Sbjct: 417 IFPAHYEDRSWRVNLFGDEVESIEEFDPLTGHKQDELEFIKVYSNSHYVTPRPTLIQAIK 476 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELKMRL EL +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEP Sbjct: 477 SIKSELKMRLDELHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEP 536 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 537 PPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 596 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP ++ VSATP +WEL + G+ VEQ+IRPTGL+DPP++IR ARTQV+D+ E+ Sbjct: 597 WDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGLIDPPIDIRPARTQVDDLVGEVRA 656 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 657 TAAAGYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 716 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S+ Sbjct: 717 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADQVTGSM 776 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 Q AI ET RRREKQ+E+N H I P+S+K+ I ++++ + D I D + Sbjct: 777 QRAIAETDRRREKQVEYNTVHGITPESIKKSIGDILNSVYERDHVLVEIG-DGGMADDAV 835 Query: 758 KKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 G +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 836 AIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRAT 877 >gi|27382542|ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110] gi|27355714|dbj|BAC52696.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110] Length = 975 Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/703 (65%), Positives = 553/703 (78%), Gaps = 11/703 (1%) Query: 102 SVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + AL LI+ P + + K+WTPHR + F ++++ Y P GDQP AI Sbjct: 151 TADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRF-EIKSHYEPRGDQPTAI 209 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 A+L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF Sbjct: 210 AELVEGIERNDRSQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 269 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S Sbjct: 270 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 329 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M LK G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 330 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVID 389 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV++FG+ IE I EF PLTG K +E IK+YANSHYVTPRPTL A+K Sbjct: 390 IFPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFIKMYANSHYVTPRPTLVQAIK 449 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEP Sbjct: 450 SIKSELKQRLDQLHDQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEP 509 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHVT+PQI M++GDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 510 PPTLFEYVPDNALVFADESHVTVPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 569 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP TI VSATP WEL + G+ VEQ+IRPTGL+DPPV IR ARTQV+D+ E+ Sbjct: 570 WDMMRPQTIAVSATPSGWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLVGEVRA 629 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 630 TAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 689 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+ Sbjct: 690 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 749 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS- 756 + AI ET RRREKQ+E+N + I P+SVK++I ++++ + D + + Q ++ Sbjct: 750 ERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVYERDHVL--VEVGGQDMTDDV 807 Query: 757 ---KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 808 ISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 850 >gi|170742630|ref|YP_001771285.1| excinuclease ABC subunit B [Methylobacterium sp. 4-46] gi|168196904|gb|ACA18851.1| excinuclease ABC, B subunit [Methylobacterium sp. 4-46] Length = 917 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/711 (63%), Positives = 557/711 (78%), Gaps = 2/711 (0%) Query: 86 MSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145 ++E+ ++ ++ +V AL +L+ NPL K+GK W PHR + F ++++ Sbjct: 100 LAEEPGASLAAAGVSATVDALTKLLTEGNPLFKDGKPWVPHRPERPQKSEGGVAF-RLKS 158 Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205 D+ P+GDQP AIA L++G+ E+ Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK L Sbjct: 159 DFSPAGDQPKAIADLVEGVRRSERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTL 218 Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 AAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR+ Sbjct: 219 AAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRA 278 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 LLER+D I+V+SVSCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QYKR Sbjct: 279 LLERDDVIIVASVSCIYGIGSVETYTAMSFTVTLGERIEQRQLIADLVALQYKRIQSDFA 338 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 RGTFRV GD IE++P+HLED WR+ +FG+++E I+EF PLTG+ I ++ +KIYANSHY Sbjct: 339 RGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVEAITEFDPLTGKTINPLKFVKIYANSHY 398 Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445 VTPRPTL A+K IK+ELK R+ EL + GRL+EAQRLEQR T+DLEM+E TG+C IENY Sbjct: 399 VTPRPTLQQAVKGIKDELKRRVEELTRMGRLIEAQRLEQRCTFDLEMIEATGACNGIENY 458 Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505 SRYLTGR PGEPPPTLFEY+P+++L+F DESHVTI QI GMYRGDF RKATLAEYGFRLP Sbjct: 459 SRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTISQIGGMYRGDFRRKATLAEYGFRLP 518 Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565 SC+DNRPLRFEEW+ +RP +I VSATP WE+EQ G+ VEQ+IRPTGLVDP V IR AR Sbjct: 519 SCLDNRPLRFEEWDAMRPQSIHVSATPAKWEMEQTGGVFVEQVIRPTGLVDPEVIIRPAR 578 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 +QV+D+ E+ A G R L+T LTKRMAEDLTEYL+E +RVRYMHS++ TLERIEII Sbjct: 579 SQVDDLLGEVKEVAAAGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEII 638 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN + Sbjct: 639 RDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEGR 698 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745 VILYAD T S+ AI ET RRR KQL +N +H I PQSVK I ++++ + D + Sbjct: 699 VILYADQRTGSMDRAIAETERRRAKQLAYNAEHGITPQSVKRNIADILESVFERDHVQVD 758 Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + +++ KA + L K+M AA +L+FEEAAR+RDE+KRL+++ Sbjct: 759 TGLAKGGVTVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 808 >gi|217979770|ref|YP_002363917.1| excinuclease ABC, B subunit [Methylocella silvestris BL2] gi|217505146|gb|ACK52555.1| excinuclease ABC, B subunit [Methylocella silvestris BL2] Length = 879 Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/694 (65%), Positives = 553/694 (79%), Gaps = 2/694 (0%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 +V++L L++ +P L+ WTPHR + + F ++ ++Y P GDQPAAI +L+ Sbjct: 103 TVESLKDLLERGDPNLREKTPWTPHRPDRPDKSEGGVKF-KLVSEYEPKGDQPAAIEELV 161 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 KGI + E+ Q+LLGVTGSGKTFTMA+VI+ RPA+V+APNK LAAQLY EFK+FFP NA Sbjct: 162 KGIAAHERDQVLLGVTGSGKTFTMAQVIQRTNRPALVLAPNKTLAAQLYGEFKSFFPDNA 221 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI Sbjct: 222 VEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 281 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M +K G+ ++Q++L++ LV QYKR RG FRV GD+I++FP+ Sbjct: 282 YGIGSVETYTAMTFTVKAGERIDQRQLIADLVALQYKRSAGDFSRGVFRVRGDTIDLFPA 341 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWR++ FG+ IE ISEF PLTG+K +++E +KIYANSHYVTPRPTL ++K IK Sbjct: 342 HYEDRAWRINFFGDSIETISEFDPLTGKKTQDLEFVKIYANSHYVTPRPTLLQSIKGIKI 401 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELK RL EL GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGR PGEPPPTL Sbjct: 402 ELKQRLAELYAGGRLLEAQRLEQRCMFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTL 461 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+++L+F DESHVT+PQI MYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW + Sbjct: 462 FEYLPDNALVFTDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAM 521 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP TI VSATPGSWE+E+ G+ VEQIIRPTGL+DPPVEIR AR+QV+D+ E+ A + Sbjct: 522 RPQTIHVSATPGSWEMERTGGVFVEQIIRPTGLIDPPVEIRPARSQVDDLLGEVREVALR 581 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E +RVRYMHS++ T+ERIEIIRDLRLG FD LVGINL Sbjct: 582 GYRSLITVLTKRMAEDLTEYLHEHGVRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINL 641 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARN++ KVILYAD T S+Q AI Sbjct: 642 LREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAARNIDGKVILYADRETGSMQRAI 701 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761 ET+RRR+KQ +N +H I P S+K I +++ + D T + + Q SL K Sbjct: 702 AETSRRRDKQTAYNLEHGITPASIKRGIQDILGSVYERDHVTVDAGLVGAQ-SLVGHNFK 760 Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + L K+M AA +L+FEEAAR+RDE+KRL++ Sbjct: 761 ATVTDLEKRMRAAAADLDFEEAARLRDELKRLQA 794 >gi|296444513|ref|ZP_06886478.1| excinuclease ABC, B subunit [Methylosinus trichosporium OB3b] gi|296258160|gb|EFH05222.1| excinuclease ABC, B subunit [Methylosinus trichosporium OB3b] Length = 842 Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/699 (63%), Positives = 556/699 (79%), Gaps = 6/699 (0%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 +T ++++L +L++ +P L+ K WTPHR + F + +DY P GDQP AIA Sbjct: 78 VTATMESLEQLLKLGDPNLREKKPWTPHRPERPQKSEGGVKF-DLVSDYEPRGDQPQAIA 136 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +L G+ + E+ Q+LLGVTGSGKT+TMA+VI QRPA+V+APNK LAAQLY EFK+FFP Sbjct: 137 ELTAGVGANERDQVLLGVTGSGKTYTMAQVIARTQRPALVLAPNKTLAAQLYGEFKSFFP 196 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRH+ATRSLLER+D I+V+SV Sbjct: 197 NNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHAATRSLLERDDVIIVASV 256 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYGIGSVE+Y+ M + +G+ +EQ++L++ LV QY+R RGTFRV GD+++I Sbjct: 257 SCIYGIGSVETYTAMTFGVSLGEKLEQRQLVTDLVALQYRRISSDFTRGTFRVRGDTVDI 316 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+H ED WR+S FG+++E I EF PLTG+K +++E +K+YANSHYVTPRPTL ++K Sbjct: 317 FPAHYEDRGWRISFFGDEVESICEFDPLTGKKTQDLEFVKVYANSHYVTPRPTLLQSIKA 376 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 IK+EL+ RL EL GRL+EAQRLEQR +DLEM+E TGSC IENYSRYLTGR PGEPP Sbjct: 377 IKDELRARLGELNNAGRLVEAQRLEQRTRFDLEMMEATGSCAGIENYSRYLTGRRPGEPP 436 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 PTLFEY+P+++++F DESHV+IPQI MY+GDF RKATLAEYGFRLPSCMDNRPLRFEEW Sbjct: 437 PTLFEYLPDNAIVFADESHVSIPQIGAMYKGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 496 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 + +RP TI VSATPG WE+EQ G+ VEQ+IRPTGL+DPPVEIR AR+QV+D+ E+ Sbjct: 497 DAMRPQTIAVSATPGDWEMEQTGGVFVEQVIRPTGLIDPPVEIRPARSQVDDLLGEVKAV 556 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 + G R L+TVLTKRMAEDLTEYL+E +RVRYMHS++ T+ERIEIIRDLRLG FDVLVG Sbjct: 557 SDLGYRSLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTIERIEIIRDLRLGAFDVLVG 616 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPECG V ILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD++T S++ Sbjct: 617 INLLREGLDIPECGFVGILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADSVTGSMK 676 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 A+DET RRR KQ +N +H I P S+K I +++ + +D ++++DA L+ Sbjct: 677 RAMDETDRRRAKQQAYNAEHGITPASIKRDIADILGSLAEQD----HVTVDAGLSELAPG 732 Query: 759 KG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L K+M AA +L FEEAAR+RDEI RL+ + Sbjct: 733 HNMQATLADLEKRMKAAAADLAFEEAARLRDEISRLQRA 771 >gi|85716011|ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A] gi|85697209|gb|EAQ35090.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A] Length = 1008 Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/705 (63%), Positives = 555/705 (78%), Gaps = 11/705 (1%) Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157 + ++L L++ P K K+WTPHR + F +++++Y P GDQP AI Sbjct: 171 TAESLEALLRDGRPEFKKDDGSLKLWTPHRPPRPEKSEGGVRF-EIKSEYQPKGDQPQAI 229 Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 +L++GI ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF Sbjct: 230 RELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 289 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S Sbjct: 290 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 349 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYGIGSVE+Y+ M L+ G+ ++Q++L++ LV QYKR RGTFRV GD I+ Sbjct: 350 VSCIYGIGSVETYTAMTFALRRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDVID 409 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+H ED AWRV++FG+++E I EF PLTG K ++ IK+Y+NSHYVTPRPTL A+K Sbjct: 410 IFPAHYEDRAWRVNLFGDEVESIEEFDPLTGHKQDELDFIKVYSNSHYVTPRPTLVQAIK 469 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK ELK RL +L +GRLLEAQRLEQR T+DLEM+E TGSC IENYSRYLTGR PGEP Sbjct: 470 SIKVELKQRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEP 529 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE Sbjct: 530 PPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 589 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W+ +RP T+ VSATPG+WEL + G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ E+ Sbjct: 590 WDMMRPQTVAVSATPGAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 649 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV Sbjct: 650 TAAKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 709 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV +VILYAD +T S+ Sbjct: 710 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADQVTGSM 769 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 Q +I ET RRREKQ+E+N + I P+SV++ I ++++ + D I A L+ Sbjct: 770 QRSIAETDRRREKQVEYNTANGITPESVRKSIGDILNSVYERDHVLVEIGDGAGSGFLAD 829 Query: 758 K------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +A L L +M AA +LNFEEAAR+RDE+KRL+++ Sbjct: 830 DAIAIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRAT 874 >gi|298292410|ref|YP_003694349.1| excinuclease ABC subunit B [Starkeya novella DSM 506] gi|296928921|gb|ADH89730.1| excinuclease ABC, B subunit [Starkeya novella DSM 506] Length = 853 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/697 (64%), Positives = 554/697 (79%), Gaps = 3/697 (0%) Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159 + +V AL+ LI+ + ++WTPHR + F +++DY P+GDQP AI Sbjct: 43 SATVAALSALIEGGRAEVDR-QVWTPHRPARPEKSEGGVKFV-LKSDYTPNGDQPKAIDD 100 Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L+ E+ Q+LLGVTGSGKTFTMA VI+ +QRPA+V+APNK LAAQLY EFK+FFP Sbjct: 101 LVAAASEGERDQVLLGVTGSGKTFTMANVIQRLQRPALVLAPNKTLAAQLYGEFKSFFPD 160 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSATRSLLER+D I+V+SVS Sbjct: 161 NAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSATRSLLERDDVIIVASVS 220 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 CIYGIGSVE+Y+ M ++++G+ ++Q+ LL+ LV QYKR RGTFRV GD IEIF Sbjct: 221 CIYGIGSVETYASMTFKIEVGERIDQRALLADLVALQYKRTQGDFGRGTFRVRGDVIEIF 280 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P+H ED AWRVS+FG+++E I EF PLTGQK ++++ +K+YANSHYVTPRPTL A+ I Sbjct: 281 PAHYEDRAWRVSLFGDEVESIQEFDPLTGQKSQDLKFVKLYANSHYVTPRPTLIQAIAGI 340 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 K EL+ RL EL GRLLEAQRLEQR T+DLEM+E TGSC IENYSR+LTGR PGEPPP Sbjct: 341 KNELRHRLDELNAMGRLLEAQRLEQRCTFDLEMMEATGSCAGIENYSRWLTGRLPGEPPP 400 Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519 TLFEY+P+++L+FVDESHVT+PQI MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW Sbjct: 401 TLFEYVPDNALIFVDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWE 460 Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 +RP T+ VSATPG WE+E+ G+ VEQ+IRPTGLVDP VE+R ARTQV+D+ E+ A Sbjct: 461 AMRPQTVHVSATPGKWEMERTGGVFVEQVIRPTGLVDPEVEVRPARTQVDDLLGEVRQTA 520 Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 +G R L+T LTKRMAEDLTEYL+E IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GI Sbjct: 521 AKGYRTLVTTLTKRMAEDLTEYLHENGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGI 580 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 NLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +V+LYAD+IT S++ Sbjct: 581 NLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVVLYADSITGSMER 640 Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759 A+ ET RRR KQ+ N +H I P+SV++ I ++++ + D T + + A++ + Sbjct: 641 AMAETERRRAKQIAWNTEHGITPESVRKAIGDILNSVYERDHVTVDAGL-AEEGATYGHN 699 Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + L K+M AA +L+FE+AAR+RDEIKRL+++ Sbjct: 700 LAAVIADLEKRMRTAAADLDFEQAARLRDEIKRLQAT 736 >gi|182677288|ref|YP_001831434.1| excinuclease ABC, B subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633171|gb|ACB93945.1| excinuclease ABC, B subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 884 Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/697 (64%), Positives = 550/697 (78%), Gaps = 8/697 (1%) Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161 + ++L L+ +P L+ W PHR + S+ F++ +DY P GDQP AI +L+ Sbjct: 110 TAESLQDLLARGDPNLRERPPWQPHRPPRPDK-SEGGHAFEIVSDYTPQGDQPQAIDELV 168 Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 GI ++E+ Q+LLGVTGSGKTFTMA+VI RPA+++APNK LAAQLY EFK+FFP+NA Sbjct: 169 TGIKAQERDQVLLGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNA 228 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 VEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI Sbjct: 229 VEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 288 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 YGIGSVE+Y+ M LK G+ ++Q++L+ LV QYKR RG FRV GD++E+FP+ Sbjct: 289 YGIGSVETYTAMTFTLKRGERIDQRQLIGDLVALQYKRSAGDFSRGVFRVRGDTLELFPA 348 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 H ED AWR+ FG++IE I EF PLTG+K++++E +K+YANSHYVTPRPTL ++K IK+ Sbjct: 349 HYEDRAWRIGFFGDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLLQSIKGIKQ 408 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ELK RL EL GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGR PGEPPPTL Sbjct: 409 ELKQRLDELNAAGRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTL 468 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 FEY+P+++L+F DESHVT+PQI MYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW + Sbjct: 469 FEYLPDNALVFTDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAM 528 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 RP T+ VSATPGSWE+EQ G+ VEQ+IRPTGL+DPPVE+ AR+QV+D+ DE+ +Q Sbjct: 529 RPQTVHVSATPGSWEMEQTGGVFVEQVIRPTGLIDPPVEVHPARSQVDDLLDELRQVTRQ 588 Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R L+TVLTKRMAEDLTEYL+E IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINL Sbjct: 589 GYRSLVTVLTKRMAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINL 648 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV KVILYAD T S+Q A+ Sbjct: 649 LREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAM 708 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG- 760 ETTRRREKQ +N++H I P ++K I +++ + +D ++S+DA K G Sbjct: 709 AETTRRREKQEAYNREHGITPATIKRGIHDILGSVYEQD----HVSVDAGLAQADLKPGH 764 Query: 761 --KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 K + L K+M AA NL FE AAR RDE++RL++ Sbjct: 765 NFKMTIADLEKRMREAAANLEFEAAARYRDELQRLQA 801 >gi|304319965|ref|YP_003853608.1| putative excinuclease abc subunit b protein [Parvularcula bermudensis HTCC2503] gi|303298868|gb|ADM08467.1| putative excinuclease abc subunit b protein [Parvularcula bermudensis HTCC2503] Length = 724 Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/693 (64%), Positives = 549/693 (79%), Gaps = 21/693 (3%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 W+PHR S + F++ +DY P+GDQPAAIA+L+ GI ++E+ Q+LLGVTGSGKT Sbjct: 27 WSPHRP-SRPEKMEGGRAFRVSSDYEPAGDQPAAIAELVAGIAAQEQDQVLLGVTGSGKT 85 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMAK+IEA QRPA+++A NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTD Sbjct: 86 FTMAKIIEATQRPALILAHNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTD 145 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEKES+INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+Y++M L++G++ Sbjct: 146 TYIEKESTINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYTEMTFTLEVGET 205 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 VE+K+LL+ LV QYKR D+ RG FR GD +EIFP+HLEDVAWR+S+FG++IE I+E Sbjct: 206 VERKQLLADLVALQYKRNDVAFARGAFRARGDIVEIFPAHLEDVAWRISLFGDEIEAITE 265 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F PLTGQKI ++ IK+YANSHYVTPRPTL A++ IK+EL L L +EG+L+EAQRL Sbjct: 266 FDPLTGQKIADLPRIKMYANSHYVTPRPTLRRAIEGIKKELAATLPILHQEGKLIEAQRL 325 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 EQR+ +D+EM+E TGSCQ IENYSRYLTGR PG PPPTLFEY+PE++L+F DESHVT+PQ Sbjct: 326 EQRVQFDIEMMEATGSCQGIENYSRYLTGRKPGHPPPTLFEYLPENALVFCDESHVTVPQ 385 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 I M+RGDF RK TLAEYGFRLPSCMDNRPL+FEEW+ +RP T+ VSATPG WEL++ G Sbjct: 386 IGAMFRGDFARKRTLAEYGFRLPSCMDNRPLKFEEWDAMRPQTVHVSATPGPWELDRTGG 445 Query: 543 IIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 + VEQ+IRPTGL+DPPVEIR T QV+DV DE A QG R L+T LTK+MAEDL Sbjct: 446 VFVEQVIRPTGLIDPPVEIRPVTTGQVNQVDDVIDECKKVAAQGGRSLVTTLTKKMAEDL 505 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TEY++E+ +RVRYMHS+V T+ERIEIIRDLRLG FDVL+GINLLREGLDIPEC V ILD Sbjct: 506 TEYMHEQGVRVRYMHSDVDTIERIEIIRDLRLGVFDVLIGINLLREGLDIPECQFVGILD 565 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A+ ET RRREKQL HN H Sbjct: 566 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADGMTGSMERALQETERRREKQLAHNAAH 625 Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----------------LSKKKGKA 762 I P++VK KI E+ D A S +++L+ + ++ Sbjct: 626 GITPKTVKAKIAEITDSDDEATKAAAGTSFTSERLTKGATGMGAMREEREAYIPGANMRS 685 Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 HL +L K+M AA NL FEEAA +RDEI++L++ Sbjct: 686 HLGALEKRMREAAANLEFEEAATLRDEIRKLEA 718 >gi|315497704|ref|YP_004086508.1| excinuclease abc, b subunit [Asticcacaulis excentricus CB 48] gi|315415716|gb|ADU12357.1| excinuclease ABC, B subunit [Asticcacaulis excentricus CB 48] Length = 723 Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/679 (65%), Positives = 542/679 (79%), Gaps = 7/679 (1%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 +W+PHR S+ F + + Y P+GDQPAAIA+L++G ++ E+ Q+LLGVTGSGK Sbjct: 30 LWSPHRP-DRPQKSEGGRRFVLHSAYEPAGDQPAAIAELVEGANAAERDQVLLGVTGSGK 88 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFTMAKVIE QRPA+++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRT Sbjct: 89 TFTMAKVIEQTQRPALILAHNKTLAAQLYSEFKAFFPENAVEYFVSYYDYYQPEAYVPRT 148 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 DTYIEK+SSINEQIDRMRH+ATR++LER+D IVV+SVSCIYGIGSVE+Y+ M +LK+G Sbjct: 149 DTYIEKDSSINEQIDRMRHAATRAILERDDVIVVASVSCIYGIGSVETYTAMTFELKVGQ 208 Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361 ++++ +L + LV QYKR D RGTFR GD IEIFP+H ED AWRVS+FG++IE ++ Sbjct: 209 TIDEAQLRADLVALQYKRNDAAFERGTFRRRGDVIEIFPAHYEDRAWRVSLFGDEIEALT 268 Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421 EF PLTG+K +++ +K+YA SHYVTPRPTL A+ IK ELK+RL +L EG+LLEAQR Sbjct: 269 EFDPLTGKKTADLKDLKVYAASHYVTPRPTLRQAIDRIKAELKLRLDQLHAEGKLLEAQR 328 Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481 LEQR T+DLEM+E TG+C IENYSRYLTGR PGEPPPT FEY+PE++LLFVDESHVT+P Sbjct: 329 LEQRTTFDLEMMEATGACAGIENYSRYLTGRAPGEPPPTFFEYLPENALLFVDESHVTVP 388 Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541 QI GMYRGDF RK+ LAEYGFRLPSCMDNRPL+FEEW +RP T+ VSATPG+WE+EQ Sbjct: 389 QIGGMYRGDFARKSVLAEYGFRLPSCMDNRPLKFEEWEAMRPQTVHVSATPGNWEMEQTG 448 Query: 542 GIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 G+ EQ+IRPTGL+DPPVEIR T QV+DV E+ A+ G R L+TVLTK+MAE+ Sbjct: 449 GVFTEQVIRPTGLIDPPVEIRPVSTGGANQVDDVIAEVREVAKNGYRSLVTVLTKKMAEN 508 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTEY++E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAIL Sbjct: 509 LTEYMHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAIL 568 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+TSLIQTIGRAARNV +VILYAD +T S++ A+ ET+RRREKQ+ +N + Sbjct: 569 DADKEGFLRSETSLIQTIGRAARNVEGRVILYADKMTGSMERALAETSRRREKQMAYNAE 628 Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAA 775 H I P+SVK I +++D P D + + A+ +A LK L +M AA Sbjct: 629 HGITPESVKRGISDILDSPYEKADRVQVPVGVAAKDSKPFLGSNFQATLKDLETRMREAA 688 Query: 776 DNLNFEEAARIRDEIKRLK 794 NL FEEAAR+RDEIKRLK Sbjct: 689 GNLEFEEAARMRDEIKRLK 707 >gi|300023982|ref|YP_003756593.1| excinuclease ABC subunit B [Hyphomicrobium denitrificans ATCC 51888] gi|299525803|gb|ADJ24272.1| excinuclease ABC, B subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 901 Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/689 (62%), Positives = 545/689 (79%), Gaps = 3/689 (0%) Query: 110 IQSDNPLLKNG-KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168 + + +P++ G ++ PHR I F ++++DY P GDQP AI++L+ G+ E Sbjct: 33 LMASHPIVSGGMPMFMPHRPERPEKSEGGIRF-KIESDYEPRGDQPQAISELVDGVAKHE 91 Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 Q+LLGVTGSGKTFTMA VI+A QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSY Sbjct: 92 HNQVLLGVTGSGKTFTMAHVIQATQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSY 151 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 YDYYQPEAYVPRTDTYIEKE+SINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE Sbjct: 152 YDYYQPEAYVPRTDTYIEKEASINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVE 211 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +Y+ M ++ G+ + + +LL+ LV Y+R D +RG+FR GD++E+FP+HLED AW Sbjct: 212 TYTAMTFTVRAGEQISRDQLLADLVALHYRRNDQNFVRGSFRARGDTVEVFPAHLEDRAW 271 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R S+FG+++E I EF PLTG K + +K+YANSHYVTP+PTL A+K IK ELK RL Sbjct: 272 RFSLFGDEVESIVEFDPLTGAKTDELALVKLYANSHYVTPKPTLQQAIKSIKIELKQRLD 331 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EL G+LLEAQRLEQR T+D+EM+E TGSC IENYSRYLTGRNPG+PPPTLFEY+P++ Sbjct: 332 ELYDAGKLLEAQRLEQRTTFDMEMMEATGSCAGIENYSRYLTGRNPGDPPPTLFEYLPDN 391 Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528 +L+F DESHVT+PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ V Sbjct: 392 ALVFADESHVTVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQSVFV 451 Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588 SATP SWE+EQ G EQ+IRPTGL+DP VEIRSA+TQV+D+ DE+ A++G R L+T Sbjct: 452 SATPASWEMEQTGGAFAEQVIRPTGLIDPVVEIRSAKTQVDDLLDEVRQVARKGYRTLVT 511 Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 VLTKRMAEDLTEY++E +RVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDI Sbjct: 512 VLTKRMAEDLTEYMHESGVRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDI 571 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 PEC LVAILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD +T S+ AI ET RRR Sbjct: 572 PECALVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADQMTGSMDRAIAETNRRR 631 Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSL 767 EKQ+ N+ + I P+S+K I +V+ + +D T + + D + +A + + Sbjct: 632 EKQMAWNEANGITPESIKRNIHDVLQSVYEQDHVTVDAGLADGDAVQSLGHNLQAVVADM 691 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++M AA +L FE AAR+RDEIKRL+ + Sbjct: 692 ERRMKEAAADLEFETAARLRDEIKRLRET 720 >gi|197104262|ref|YP_002129639.1| excinuclease ABC subunit B protein [Phenylobacterium zucineum HLK1] gi|196477682|gb|ACG77210.1| excinuclease ABC subunit B protein [Phenylobacterium zucineum HLK1] Length = 747 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/677 (65%), Positives = 538/677 (79%), Gaps = 5/677 (0%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 +W PHR S+ F++ +DY P+GDQP AI +L++G+ RE Q+LLGVTGSGK Sbjct: 27 LWKPHRP-ERPEKSEGGRRFKLVSDYQPAGDQPQAIRELVEGLEGREHDQVLLGVTGSGK 85 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFTMAKVIE QRPA+++APNK LAAQLYSEF++FFP NAVE+FVSYYDYYQPEAYVPRT Sbjct: 86 TFTMAKVIEETQRPALILAPNKTLAAQLYSEFRSFFPENAVEFFVSYYDYYQPEAYVPRT 145 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+YS M QLK GD Sbjct: 146 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYSAMTFQLKPGD 205 Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361 V++K+L+ LV QYKR D RGTFR GD+IEIFP+H ED AWR+S+FG+++E I Sbjct: 206 RVDEKKLMGDLVALQYKRNDQAFERGTFRRRGDTIEIFPAHYEDRAWRISLFGDEVEAIV 265 Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421 EF PLTG+K ++ +KIYANSHYVTPRPTL A+ IK ELK RL L G+LLEAQR Sbjct: 266 EFDPLTGKKTAELQGVKIYANSHYVTPRPTLRQAINQIKVELKERLDWLVANGKLLEAQR 325 Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481 LEQR T+DLEM+E TGSC IENYSRYLTGR PGEPPPT FEYIP+++LLFVDESH T+P Sbjct: 326 LEQRTTFDLEMIEATGSCAGIENYSRYLTGRRPGEPPPTFFEYIPDNALLFVDESHQTVP 385 Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541 QI MYRGD+ RK TLAE+GFRLPSC+DNRPL+FEEW+ +RP T+ VSATPG WE+E+ Sbjct: 386 QIGAMYRGDYRRKWTLAEFGFRLPSCIDNRPLKFEEWDAMRPDTVHVSATPGPWEMEKTG 445 Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 G+ EQ+IRPTGL+DPPVE+R +QV+DV DE+ A +G R L+TVLTK+MAED Sbjct: 446 GVFAEQVIRPTGLIDPPVEVRPVSKDGFSQVDDVIDEVRQTAARGYRSLITVLTKKMAED 505 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTE+++E+ +RVRYMHS+V TLERIEIIRDLRLG FD+LVGINLLREGLDIPECGLVAIL Sbjct: 506 LTEFMHEQGLRVRYMHSDVDTLERIEIIRDLRLGAFDILVGINLLREGLDIPECGLVAIL 565 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD++T S++ A+ ET RRREKQ+ +N + Sbjct: 566 DADKEGFLRSETSLIQTIGRAARNVDGRVILYADSVTGSMERAMAETQRRREKQMAYNLE 625 Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 H I P+SVK +I +++ +D T + + K L+ L +M AA N Sbjct: 626 HGITPESVKSQIKDILASPYEKDRVTVPVGVAEDGKPFLGDNFKTTLRDLENRMKEAAAN 685 Query: 778 LNFEEAARIRDEIKRLK 794 L FEEAAR+RDEIKRLK Sbjct: 686 LEFEEAARLRDEIKRLK 702 >gi|312116115|ref|YP_004013711.1| excinuclease ABC subunit B [Rhodomicrobium vannielii ATCC 17100] gi|311221244|gb|ADP72612.1| excinuclease ABC, B subunit [Rhodomicrobium vannielii ATCC 17100] Length = 976 Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/686 (63%), Positives = 552/686 (80%), Gaps = 4/686 (0%) Query: 112 SDNPLL--KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169 D+PLL +N ++ PHR S+ F +++D+ P GDQPAAI +L++G+ E+ Sbjct: 85 GDHPLLTGENMPMFMPHRP-PRPEKSEGGKPFIIKSDFEPCGDQPAAIRELVEGVTKLER 143 Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 Q+LLGVTGSGKTFTMAKVIE QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYY Sbjct: 144 EQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYY 203 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 DYYQPEAY+PR+DTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+ Sbjct: 204 DYYQPEAYIPRSDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVET 263 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 YS M +++GD ++Q+++L+ LV QYKR +I RG FRV GD+IEIFP+H ED AWR Sbjct: 264 YSAMTFTIQVGDRLQQRQILADLVAIQYKRNNISFARGDFRVRGDTIEIFPAHQEDRAWR 323 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 +SMFG+++E I+EF PLTG+K +++ +KIYANSHYVTP+PTL+ A++ +++EL+ +L Sbjct: 324 ISMFGDEVESIAEFDPLTGEKTQDLALVKIYANSHYVTPKPTLHQAIRGMQQELQEQLQR 383 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 GRLLEAQRLEQR +D+EM+E TGSC IENYSR+LTGR PGEPPPTLFEY+P+++ Sbjct: 384 FNATGRLLEAQRLEQRTQFDIEMIEATGSCNGIENYSRWLTGRAPGEPPPTLFEYLPDNA 443 Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 L+F DESHVT+PQI GM++GDF RK+TLAE+GFRLPSC+DNRPLRFEEW+ +RP T VS Sbjct: 444 LVFADESHVTVPQIGGMFKGDFRRKSTLAEFGFRLPSCIDNRPLRFEEWDAMRPQTTFVS 503 Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 ATPG WE+EQ G+ VEQ+IRPTGL+DPPVEIR +TQV+D+ DE QG R+L+T Sbjct: 504 ATPGKWEMEQTGGVFVEQVIRPTGLIDPPVEIRPVKTQVDDLIDECRKTIAQGYRVLVTT 563 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 LTKRM+EDLTEY +E+ ++VRYMHS+V TLERIEIIRDLRLG FDVL+GINLLREGLDIP Sbjct: 564 LTKRMSEDLTEYAHEQGLKVRYMHSDVDTLERIEIIRDLRLGAFDVLIGINLLREGLDIP 623 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 E LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ AI ET RRRE Sbjct: 624 EVALVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADNITGSMERAIAETNRRRE 683 Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLR 768 KQ+E+N +H I PQSV++ I +++ + D T + + Q L +A + +L Sbjct: 684 KQVEYNTEHGITPQSVRKNIGDILASVYERDHVTVDAGFAEGAQTPLVGHNLQAVIANLE 743 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 K+M AA NL FEEAAR+RDE+KRL+ Sbjct: 744 KRMREAASNLEFEEAARLRDEVKRLR 769 >gi|167648209|ref|YP_001685872.1| excinuclease ABC subunit B [Caulobacter sp. K31] gi|167350639|gb|ABZ73374.1| excinuclease ABC, B subunit [Caulobacter sp. K31] Length = 761 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/679 (65%), Positives = 542/679 (79%), Gaps = 7/679 (1%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 +W PHR + S+ F++ +DY P+GDQP AIA+L+ G+ +E Q+LLGVTGSGK Sbjct: 41 LWQPHRP-ARPEKSEGGRRFKLVSDYEPAGDQPTAIAELVAGLEGKENDQVLLGVTGSGK 99 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFTMAKVIEA QRPA+++APNK LAAQLYSEFK+FFPHNAVEYFVSYYDYYQPEAYVPRT Sbjct: 100 TFTMAKVIEATQRPALILAPNKTLAAQLYSEFKSFFPHNAVEYFVSYYDYYQPEAYVPRT 159 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M L++G Sbjct: 160 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 219 Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361 ++ +K++++ LV QQYKR D RGTFR GD+IEIFP+H ED AWR+S+FG+++E IS Sbjct: 220 TINEKQMMADLVAQQYKRNDAAFERGTFRRRGDTIEIFPAHYEDRAWRISLFGDEVESIS 279 Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421 EF PLTG+K ++ETIK+YANSH+VTPRPTL A+ I++ELK RL + + G+LLEAQR Sbjct: 280 EFDPLTGKKTGDLETIKVYANSHHVTPRPTLRQAIISIRQELKERLAWMYENGKLLEAQR 339 Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481 LEQR +DLEM+ETTGSC IENYSRYL+GR GEPPPT FEYIP+++LLF DESH T+P Sbjct: 340 LEQRTNFDLEMIETTGSCAGIENYSRYLSGRKAGEPPPTFFEYIPDNALLFTDESHQTVP 399 Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541 QI MY+GD RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP WELE+ Sbjct: 400 QIGAMYKGDRSRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPAKWELERAG 459 Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 G+ EQ+IRPTGL+DPPVE+R +QV+DV DE+ A +G R L+TVLTK+MAED Sbjct: 460 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVIDEVRQAKAKGYRTLVTVLTKKMAED 519 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTEY+ E+ I VRYMHS+V T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL Sbjct: 520 LTEYMNEQGIAVRYMHSDVDTMERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 579 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S++ A+ ET+RRREKQ ++N + Sbjct: 580 DADKEGFLRSETSLIQTIGRAARNVDGKVILYADRITGSMERAMGETSRRREKQHQYNLE 639 Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAA 775 H I P+SVK I ++++ P D T I A+ S KA LK + +M AA Sbjct: 640 HGITPESVKRDIKDILNSPYERGDRVTVPIGGVAETGKPFSGDNFKAALKDMEARMREAA 699 Query: 776 DNLNFEEAARIRDEIKRLK 794 NL FE AAR+RDEIKR+K Sbjct: 700 ANLEFETAARLRDEIKRMK 718 >gi|85374647|ref|YP_458709.1| excinuclease ABC subunit B [Erythrobacter litoralis HTCC2594] gi|84787730|gb|ABC63912.1| excinuclease ABC subunit B [Erythrobacter litoralis HTCC2594] Length = 727 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/693 (64%), Positives = 550/693 (79%), Gaps = 6/693 (0%) Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172 D P + G+ +TPHR + S F++ ++Y P+GDQP AIA+L++ EK Q Sbjct: 11 DEP--ETGEEFTPHRP-ARPEKSMPGKRFELVSEYEPAGDQPTAIAELVESAREGEKTQT 67 Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFTMAKVIE +QRPA+V+APNKILAAQLY EFK+FFPHNAVEYFVSYYDYY Sbjct: 68 LLGVTGSGKTFTMAKVIETLQRPALVLAPNKILAAQLYGEFKSFFPHNAVEYFVSYYDYY 127 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS Sbjct: 128 QPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSA 187 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 MI +K ++V+Q+EL+ LV QYKR D RGTFRV GD++EIFPSH ED AWRVS Sbjct: 188 MIFDIKKDETVDQRELIRKLVALQYKRNDAAFQRGTFRVRGDNLEIFPSHYEDRAWRVSF 247 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG+DIEEI+EF PLTG+K +++++++YANSHYVTP PT+ A + IK EL+ RL EL Sbjct: 248 FGDDIEEINEFDPLTGEKGASLDSVRVYANSHYVTPGPTMKQASEAIKFELQERLKELHA 307 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EGRLLEAQRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE++LLF Sbjct: 308 EGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLF 367 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 VDESH T+PQI M RGD RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T VSATP Sbjct: 368 VDESHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFCVSATP 427 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 G+WE+EQ G+ EQ+IRPTGL+DPPVEIR QV+D +E N A++G R L+T LTK Sbjct: 428 GNWEMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCINECNETAKKGYRTLVTTLTK 487 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RMAEDLTE+++E ++VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIPECG Sbjct: 488 RMAEDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPECG 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LV ILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD IT S++ A+ ET RRREKQ Sbjct: 548 LVCILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADRITGSMERAMAETERRREKQR 607 Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772 +N++H I PQ++K +I +++ +D T + D ++ +L +A+++ L K+M Sbjct: 608 AYNEEHGITPQTIKRQIADIVAHTASQDGVTVDTG-DDERNNLVGHNLRAYIEDLEKRMR 666 Query: 773 LAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 AA +L FEEA R+RDEI+RL++ GL DS Sbjct: 667 EAAADLEFEEAGRLRDEIRRLENDEL--GLSDS 697 >gi|146278911|ref|YP_001169070.1| excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17025] gi|145557152|gb|ABP71765.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17025] Length = 726 Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/680 (63%), Positives = 537/680 (78%), Gaps = 10/680 (1%) Query: 125 PHRSWSINNHSKDITF---------FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175 PH + ++ H ++ F+M+T + P+GDQP AIA+L G+ + E+ Q+LLG Sbjct: 2 PHNNMNMPMHRPEVLTRPKLEGGRRFEMKTPFKPAGDQPTAIAELASGVRAGEQNQVLLG 61 Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 TG+GKTFTMAK+IE QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPE Sbjct: 62 ATGTGKTFTMAKIIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPE 121 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 AYVPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M Sbjct: 122 AYVPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQ 181 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 L +G S +Q+++++ LV QQY+R D G RG+FRV GDS+E++P+HLED AWR S FG Sbjct: 182 DLVVGQSYDQRQVIAELVAQQYRRNDQGFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGE 241 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 ++E + EF PLTG K + + I+IYANSHYVTPRPT+ A++ IK+EL+ RL +L EG+ Sbjct: 242 ELESVVEFDPLTGAKTDSFKQIRIYANSHYVTPRPTMQQAVQGIKKELRQRLDQLVAEGK 301 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 LLEAQRLEQR +D+EMLE TG C IENYSRYLTGR PGEPPPTLFE+IP+++++F DE Sbjct: 302 LLEAQRLEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADE 361 Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 SHVT+PQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +W Sbjct: 362 SHVTVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAW 421 Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 ELEQ G+ EQ+IRPTGL+DP VEIR QV+D+ DEI A GLR L+TVLTKRMA Sbjct: 422 ELEQAGGVFAEQVIRPTGLLDPMVEIRPVEMQVDDLLDEIRKVAAAGLRTLVTVLTKRMA 481 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDLTEYL+E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVA Sbjct: 482 EDLTEYLHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVA 541 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDADKEGFLRS+TSLIQTIGRAARN +VI+YAD IT S++ A+ ET RRREKQ+ +N Sbjct: 542 ILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALRETERRREKQIAYN 601 Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775 + H I PQ+VK+ + +V+ + D ++ ++ + AHL LR M AA Sbjct: 602 EAHGITPQTVKKNVEDVLAGLWQGDTDMNRVTAKVEKPMVGSNLA-AHLDGLRTAMRKAA 660 Query: 776 DNLNFEEAARIRDEIKRLKS 795 +NL FEEAAR+RDEIKRL++ Sbjct: 661 ENLEFEEAARLRDEIKRLEA 680 >gi|302382065|ref|YP_003817888.1| excinuclease ABC subunit B [Brevundimonas subvibrioides ATCC 15264] gi|302192693|gb|ADL00265.1| excinuclease ABC, B subunit [Brevundimonas subvibrioides ATCC 15264] Length = 791 Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/684 (65%), Positives = 543/684 (79%), Gaps = 17/684 (2%) Query: 123 WTPHRSWSINNHSKDITF-----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177 WTPHR + +K +T F+++T Y P+GDQPAAIA+L+ ++ Q+LLGVT Sbjct: 70 WTPHRP---DRPAKSLTGRQKHRFRLETSYTPAGDQPAAIAELVSQASQGDRDQVLLGVT 126 Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 GSGKTFTMAKVIEA QRPA+++APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY Sbjct: 127 GSGKTFTMAKVIEATQRPALILAPNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAY 186 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 VPRTDTYIEK+SSINEQIDRMRHSATRS+LER+D IVV+SVSCIYGIGSVE+Y+ M L Sbjct: 187 VPRTDTYIEKDSSINEQIDRMRHSATRSILERDDVIVVASVSCIYGIGSVETYTAMTFDL 246 Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 K+GD +++ +L + L+ QYKR D+ RG FR GD++EIFP HL+D AWRVS+FG++I Sbjct: 247 KVGDQIDESKLRADLIALQYKRNDVAFERGMFRKRGDTVEIFPVHLDDRAWRVSLFGDEI 306 Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417 E I+EF PLTG+K ++ + +YA SHYVTPRPTLN A+ IK ELK L + + G+LL Sbjct: 307 ESIAEFDPLTGKKTAELKEVTVYAASHYVTPRPTLNQALGGIKAELKETLDWMIENGKLL 366 Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477 EAQRLEQR+ +DLEM+E TGSC IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESH Sbjct: 367 EAQRLEQRVRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESH 426 Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 VTI QI+GM+RGD+ RK+TLAEYGFRLPSC+DNRPL+F+EW +RP T+ VSATPG WE+ Sbjct: 427 VTIGQINGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFDEWEAMRPQTVHVSATPGPWEM 486 Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKR 593 EQ G+ VEQ+IRPTGL+DPPVEIR + R QV+DV DE+ A+ G R L+TVLTK+ Sbjct: 487 EQTGGVFVEQVIRPTGLIDPPVEIRPVSGTTRNQVDDVIDEVKAVARAGYRSLVTVLTKK 546 Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAEDLTEY++E+ +RVRYMHS+V T+ERIEIIRDLRLG FDVL+GINLLREGLDIPECGL Sbjct: 547 MAEDLTEYMHEQGVRVRYMHSDVDTMERIEIIRDLRLGTFDVLIGINLLREGLDIPECGL 606 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 VAILDADKEGFLRS+TSLIQTIGRAARNV+ VILYAD +T S++ A+ ET RRRE+Q Sbjct: 607 VAILDADKEGFLRSETSLIQTIGRAARNVDGHVILYADRVTGSMERAMAETNRRRERQEA 666 Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQ 770 +N +H I P+SVK I E+++ +D TT + DA+ +A LK L + Sbjct: 667 YNAEHGITPESVKRDIKEILNSPYEKDRVLIPTTGVKEDAR--PFIGNNFQATLKDLEGK 724 Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794 M AA NL FEEA R+RDEIK+LK Sbjct: 725 MREAASNLEFEEAGRLRDEIKKLK 748 >gi|254466362|ref|ZP_05079773.1| excinuclease ABC, B subunit [Rhodobacterales bacterium Y4I] gi|206687270|gb|EDZ47752.1| excinuclease ABC, B subunit [Rhodobacterales bacterium Y4I] Length = 732 Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/655 (65%), Positives = 529/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T + P+GDQPAAI +L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 30 FVMNTTFDPAGDQPAAIKELSQGVMEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH Sbjct: 90 PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+++SVSCIYGIGSVE+YS M LK G+ +Q+++++ LV QQYKR Sbjct: 150 SATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKAGEMYDQRQIMADLVAQQYKRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GD++EIFP+HLED AW++S FG ++E+I+EF PLTG+K + + I++Y Sbjct: 210 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEQITEFDPLTGEKTGSFDQIRVY 269 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTLN A+ IK+ELKMRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 270 ANSHYVTPKPTLNQAVISIKQELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD RK TLAE+ Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDHRRKFTLAEH 389 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPEVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ G R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 450 IRPVSMQVDDLLDEVRKVTADGFRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+DET RRREKQ+ +N +H I P++VK+ + +V+ + D Sbjct: 570 NADGRVIMYADKITGSMERALDETNRRREKQIAYNLEHGITPETVKKNVEDVLAGLYEGD 629 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR M AA+NL FEEAAR+RDEIKRL++ Sbjct: 630 VDMNRVTAQIGK-PMHGANLEAHLNGLRDDMRKAAENLEFEEAARLRDEIKRLEA 683 >gi|295690822|ref|YP_003594515.1| excinuclease ABC, subunit B [Caulobacter segnis ATCC 21756] gi|295432725|gb|ADG11897.1| excinuclease ABC, B subunit [Caulobacter segnis ATCC 21756] Length = 756 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/679 (65%), Positives = 542/679 (79%), Gaps = 7/679 (1%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 +WTPHR + + ++ F++ ++Y P+GDQP AIA+L++GI S ++ Q+LLGVTGSGK Sbjct: 36 LWTPHRP-ARPDKTEGGRKFKLVSEYQPAGDQPTAIAELVQGIESGDQDQVLLGVTGSGK 94 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFTMAKVIEA QRPA+++APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVPRT Sbjct: 95 TFTMAKVIEATQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRT 154 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M L++G Sbjct: 155 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 214 Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361 V++K+L++ LV QQYKR D RG FR GD+IEIFP+H ED AWRV+MFG+++E +S Sbjct: 215 KVDEKQLIADLVAQQYKRNDQAFERGAFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALS 274 Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421 EF LTG+K ++E IK+YANSH+VTPRPTL A+ I++ELK RL L G+LLEAQR Sbjct: 275 EFDTLTGKKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQR 334 Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481 LEQR T+DLEM+ETTGSC IENYSRYL+GR PGEPPPT FEYIP+++LLF DESH T+P Sbjct: 335 LEQRTTFDLEMIETTGSCAGIENYSRYLSGRKPGEPPPTFFEYIPDNALLFTDESHQTVP 394 Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541 QI MY+GD +RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP +WE+E+ Sbjct: 395 QIGAMYKGDRNRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWEMERAG 454 Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 G+ EQ+IRPTGL+DPPVE+R +QV+DV DEI Q+G R L+TVLTK+MAED Sbjct: 455 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAED 514 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTEYL E+ IRVRYMHS+V TLERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL Sbjct: 515 LTEYLNEQGIRVRYMHSDVDTLERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 574 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+TSLIQTIGRAARN++ KVILYAD IT S++ A+ ET RRREKQ +N + Sbjct: 575 DADKEGFLRSETSLIQTIGRAARNIDGKVILYADRITGSMERAMAETARRREKQHAYNLE 634 Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAA 775 H I P+SVK I ++++ P D + + + S KA LK L +M AA Sbjct: 635 HGITPESVKRDIKDILNSPYERGDRVLVPMGMSETDDRPFSGDNFKAALKDLEAKMREAA 694 Query: 776 DNLNFEEAARIRDEIKRLK 794 NL FE AAR+RDEIKR+K Sbjct: 695 ANLEFETAARLRDEIKRMK 713 >gi|259415323|ref|ZP_05739244.1| excinuclease ABC, B subunit [Silicibacter sp. TrichCH4B] gi|259348553|gb|EEW60315.1| excinuclease ABC, B subunit [Silicibacter sp. TrichCH4B] Length = 788 Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/655 (65%), Positives = 529/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F MQT + P+GDQP AIA+L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 88 FVMQTAFSPAGDQPTAIAELSQGVFDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 147 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH Sbjct: 148 PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 207 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+YS M L +G +Q+++++ LV QQYKR Sbjct: 208 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLNVGQDYDQRQIMADLVAQQYKRN 267 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++ + E I++Y Sbjct: 268 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGERTGSFEKIRVY 327 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTLN A+ IK EL+ RL L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 328 ANSHYVTPKPTLNQAVISIKNELRQRLDNLVSEGKLLEAQRLEQRTNFDIEMLEATGHCN 387 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD RK TLAE+ Sbjct: 388 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKMTLAEH 447 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQ+IRPTGL+DP VE Sbjct: 448 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQAGGVFAEQVIRPTGLLDPEVE 507 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI +G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 508 IRPVGMQVDDLLDEIRAVTARGFRTLATVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 567 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 568 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 627 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + KVI+YAD IT S++ AI ET RRREKQ+ +N++H I P++VK+ + +V+ + D Sbjct: 628 NADGKVIMYADRITGSMERAIAETNRRREKQIAYNEEHGITPETVKKNVDDVLAGLYQGD 687 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + L +AHL LR+QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 688 TDMSRVTATIDK-PLHGANFEAHLDGLREQMRKAAENLEFEEAARLRDEVKRLEA 741 >gi|154252735|ref|YP_001413559.1| excinuclease ABC subunit B [Parvibaculum lavamentivorans DS-1] gi|154156685|gb|ABS63902.1| excinuclease ABC, B subunit [Parvibaculum lavamentivorans DS-1] Length = 771 Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/680 (63%), Positives = 546/680 (80%), Gaps = 7/680 (1%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178 N ++ PHR S+ + ++Y P+GDQP AIA+L++ ++ E+ Q+LLGVTG Sbjct: 54 NWPLFEPHRP-ERPEKSEGGRRLNLVSEYQPAGDQPTAIAELVEAVNKGERDQVLLGVTG 112 Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 SGKT+TMA+VIE QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYV Sbjct: 113 SGKTYTMAQVIERTQRPALILAPNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYV 172 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298 PRTDTYIEKESSINEQIDRMRHSATR+LLER+D ++V+SVSCIYGIGSVE+YS M +K Sbjct: 173 PRTDTYIEKESSINEQIDRMRHSATRALLERDDVVIVASVSCIYGIGSVETYSAMTFSVK 232 Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358 +G+ +++K+L++ LV QYKR D RGTFRV GD++E+FP+H ED AWR+ MFG++IE Sbjct: 233 VGERLDRKQLIADLVALQYKRNDQAFGRGTFRVRGDTVEVFPAHYEDRAWRIGMFGDEIE 292 Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418 EISEF PLTG K +K+YANSHYVTPRP L+ A++ IK +L++RL EL+ +G+LLE Sbjct: 293 EISEFDPLTGHKTDKFTEVKLYANSHYVTPRPALSQAIEEIKHDLQVRLQELKGQGKLLE 352 Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478 AQRLEQR +D+EM+E TGSC IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHV Sbjct: 353 AQRLEQRTQFDIEMMEATGSCAGIENYSRYLTGRKPGEPPPTLFEYLPDNALVFADESHV 412 Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538 TIPQI GM+RGD+ RK+TLAEYGFRLPSC+DNRP+RFEEWN +RP ++ VSATPG WE++ Sbjct: 413 TIPQIGGMFRGDYKRKSTLAEYGFRLPSCVDNRPMRFEEWNAMRPQSVFVSATPGPWEMD 472 Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q G+ EQ+IRPTGL+DPP IR TQV+D+ E + A +G R+L+T LTKRMAEDL Sbjct: 473 QTGGVFTEQVIRPTGLIDPPTIIRPVATQVDDLIAECHEVAAKGQRVLVTTLTKRMAEDL 532 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TEY++E+ IRVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILD Sbjct: 533 TEYMHEQGIRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILD 592 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ AI ET RRREKQ +N++H Sbjct: 593 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADKITGSMERAIAETNRRREKQKAYNEEH 652 Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAAD 776 I P+S++ I ++++ + D ++ +D + + +AH+ L ++M AA Sbjct: 653 GITPESIRRNIGDILESVYERD----HVRVDTGEADEAFIGHNLRAHIADLERKMKDAAA 708 Query: 777 NLNFEEAARIRDEIKRLKSS 796 +L FE AAR+RDEIKRL+++ Sbjct: 709 DLEFETAARLRDEIKRLEAT 728 >gi|254475981|ref|ZP_05089367.1| excinuclease ABC, B subunit [Ruegeria sp. R11] gi|214030224|gb|EEB71059.1| excinuclease ABC, B subunit [Ruegeria sp. R11] Length = 732 Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/655 (64%), Positives = 529/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ P+GDQPAAI +L GI E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 30 FVMHTEFAPAGDQPAAIKELAGGIQDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH Sbjct: 90 PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+YS M LK+G+ +Q+++++ LV QQYKR Sbjct: 150 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGEEYDQRQVMADLVAQQYKRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG++ + I++Y Sbjct: 210 DQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGERTGTFDQIRVY 269 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTL A+ IKEEL+MRL L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 270 ANSHYVTPKPTLKQAVISIKEELRMRLDHLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD RK TLAE+ Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDHRRKFTLAEH 389 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQ+IRPTGL+DP VE Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQSGGVFAEQVIRPTGLLDPEVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ + G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TLE Sbjct: 450 IRPVDMQVDDLLDEVRKVTENGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A++ET RRREKQ+ +N++H I P +VK+ + +V+ + D Sbjct: 570 NADGRVIMYADRITGSMERALNETNRRREKQIAYNEEHGITPATVKKNVEDVLAGLYEGD 629 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR+QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 630 VDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAENLEFEEAARLRDEVKRLEA 683 >gi|307295050|ref|ZP_07574892.1| excinuclease ABC, B subunit [Sphingobium chlorophenolicum L-1] gi|306879524|gb|EFN10742.1| excinuclease ABC, B subunit [Sphingobium chlorophenolicum L-1] Length = 727 Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/678 (64%), Positives = 540/678 (79%), Gaps = 2/678 (0%) Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177 K G+ + PHR + S+ F++ +DY PSGDQP AIA+L++ + EK Q+LLGVT Sbjct: 13 KTGEAFVPHRP-ARPEKSEGGRAFKLVSDYEPSGDQPTAIAELVETALTGEKDQVLLGVT 71 Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 GSGKTFTMAKVIEA+QRPA+V+APNKILAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY Sbjct: 72 GSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAY 131 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 V R+DTYIEKESS+NE IDRMRHSATR+LLER+D ++V+SVSC+YGIGSVE+YS M + Sbjct: 132 VARSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIGSVETYSAMTFSM 191 Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 K G +Q+E++ LV QYKR D RG FRV GD++EIFPSH ED AWRVS FGN+I Sbjct: 192 KKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYEDTAWRVSFFGNEI 251 Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417 EEI EF PLTG+KI +++ +K++ NSH+VTP PTL AM+ I+ EL RL EL EG+LL Sbjct: 252 EEIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAERLKELTAEGKLL 311 Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477 EAQRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH Sbjct: 312 EAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESH 371 Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 T+PQI M RGD RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VSATPG WE+ Sbjct: 372 QTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVSVSATPGPWEM 431 Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 EQ G+ EQ+IRPTGL+DPPVEI+ QV+D+ +E A QG R L+T LTKRMAED Sbjct: 432 EQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAAQGYRTLVTTLTKRMAED 491 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTE+++E I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIPECGLVAIL Sbjct: 492 LTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAIL 551 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A++ET+RRREKQ+E+N Sbjct: 552 DADKEGFLRSETSLIQTIGRAARNVDGRVILYADRVTGSMERALNETSRRREKQMEYNAA 611 Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 H I PQ+VK+ I ++I + +D T ++ + L +A+++ L K+M AA + Sbjct: 612 HGITPQTVKKNIGDIIAHVASKDQVTVETGLE-DRPHLVGHNLRAYIEDLEKKMRAAAAD 670 Query: 778 LNFEEAARIRDEIKRLKS 795 L FEEA RIRDEI++L++ Sbjct: 671 LEFEEAGRIRDEIRKLEA 688 >gi|260431431|ref|ZP_05785402.1| excinuclease ABC, B subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415259|gb|EEX08518.1| excinuclease ABC, B subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 726 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/655 (64%), Positives = 531/655 (81%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ P+GDQP AIA+L +GI E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 28 FVMHTEFSPAGDQPTAIAELTQGILEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INEQIDRMRH Sbjct: 88 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK+G+ +Q+++++ LV QQY+R Sbjct: 148 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGNEYDQRQVMADLVAQQYRRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EI+P+HLED AW++S FG ++E I+EF PLTG++ +E I++Y Sbjct: 208 DQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEAITEFDPLTGERTDTMEQIRVY 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 268 ANSHYVTPKPTMQQAILGIKKELRQRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCN 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 328 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 388 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPSAWELEQTGGVFTEQVIRPTGLLDPEVE 447 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ + +G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ T+E Sbjct: 448 IRPVEMQVDDLLDEVRKVSAKGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTIE 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 508 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 567 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A++ET RRR KQ+ +N++H I P++VK+ + +V+ + D Sbjct: 568 NAEGRVIMYADRITGSMERALEETNRRRAKQIAYNEEHGITPETVKKNVDDVLAGLYAGD 627 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR+QM AA+NL FEEAARIRDEIKRL++ Sbjct: 628 VDMNRVTATIDK-PMHGANLEAHLDGLREQMRKAAENLEFEEAARIRDEIKRLEA 681 >gi|77462635|ref|YP_352139.1| excinuclease ABC subunit B [Rhodobacter sphaeroides 2.4.1] gi|332557517|ref|ZP_08411839.1| excinuclease ABC subunit B [Rhodobacter sphaeroides WS8N] gi|77387053|gb|ABA78238.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides 2.4.1] gi|332275229|gb|EGJ20544.1| excinuclease ABC subunit B [Rhodobacter sphaeroides WS8N] Length = 727 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M+T + P+GDQP AIA+L G+ E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 27 FEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 87 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M L +G+S +Q+++++ LV QQY+R Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVAQQYRRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K + + I+IY Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDSFKQIRIY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ A++ IK EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 267 ANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+ Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI A GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMHS++ T+E Sbjct: 447 IRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+ + D Sbjct: 567 NADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVLAGLWQGD 626 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + + AHL LR M AA+NL FEEAAR+RDEIKRL++ Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDGLRVSMRKAAENLEFEEAARLRDEIKRLEA 680 >gi|221638490|ref|YP_002524752.1| excinuclease ABC subunit B [Rhodobacter sphaeroides KD131] gi|221159271|gb|ACM00251.1| UvrABC system protein B [Rhodobacter sphaeroides KD131] Length = 727 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M+T + P+GDQP AIA+L G+ E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 27 FEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 87 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M L +G+S +Q+++++ LV QQY+R Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVAQQYRRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K + + I+IY Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDSFKQIRIY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ A++ IK EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 267 ANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+ Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI A GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMHS++ T+E Sbjct: 447 IRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+ + D Sbjct: 567 NADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVLSGLWQGD 626 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + + AHL LR M AA+NL FEEAAR+RDEIKRL++ Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDGLRVSMRKAAENLEFEEAARLRDEIKRLEA 680 >gi|126461527|ref|YP_001042641.1| excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17029] gi|126103191|gb|ABN75869.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17029] Length = 727 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M+T + P+GDQP AIA+L G+ E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 27 FEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 87 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M L +G+S +Q+++++ LV QQY+R Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVAQQYRRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K + + I+IY Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDSFKQIRIY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ A++ IK EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 267 ANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+ Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI A GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMHS++ T+E Sbjct: 447 IRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+ + D Sbjct: 567 NADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVLAGLWQGD 626 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + + AHL LR M AA+NL FEEAAR+RDEIKRL++ Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDGLRVSMRKAAENLEFEEAARLRDEIKRLEA 680 >gi|163743673|ref|ZP_02151048.1| excinuclease ABC subunit B [Phaeobacter gallaeciensis 2.10] gi|161383040|gb|EDQ07434.1| excinuclease ABC subunit B [Phaeobacter gallaeciensis 2.10] Length = 732 Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ P+GDQP AI +L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 30 FVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 90 PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+++SVSCIYGIGSVE+YS M LK+GD +Q+++++ LV QQYKR Sbjct: 150 SATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGDDYDQRQVMADLVAQQYKRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K + I++Y Sbjct: 210 DQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGEKTGTFDQIRVY 269 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTL A+ IKEELKMRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 270 ANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD RK TLAE+ Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTLAEH 389 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEQSSGVFAEQVIRPTGLLDPQVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TLE Sbjct: 450 IRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRREKQ+ +N++H I P +VK+ + +V+ + D Sbjct: 570 NAEGRVIMYADRITGSMERALGETNRRREKQIAYNEEHGITPATVKKNVEDVLAGLYAGD 629 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR+QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 630 VDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAENLEFEEAARLRDEVKRLEA 683 >gi|89056093|ref|YP_511544.1| excinuclease ABC subunit B [Jannaschia sp. CCS1] gi|88865642|gb|ABD56519.1| Excinuclease ABC subunit B [Jannaschia sp. CCS1] Length = 731 Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +QT++ P+GDQP AIA+L +GI E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 31 FVLQTEFEPAGDQPTAIAELSEGIREGERDQVLLGATGTGKTFTMAKMIEETQRPAIILA 90 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EFKNFFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 91 PNKTLAAQLYAEFKNFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 150 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M L G +Q+++++ LV QQY+R Sbjct: 151 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGREYDQRKVIADLVAQQYRRN 210 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTGQK E I++Y Sbjct: 211 DAAFQRGCFRVRGDSLEVWPAHLDDRAWKLSFFGEELESITEFDPLTGQKTDTFEKIRVY 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ AMK IK EL MRL ++ EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 271 ANSHYVTPRPTMQQAMKGIKSELAMRLKQMIDEGKLLEAQRLEQRTNFDLEMLEATGVCN 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 331 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP +E Sbjct: 391 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLIDPQIE 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ TLE Sbjct: 451 IRPVDMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTLE 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 511 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRR KQL +N++H I P ++K+ + +++ + D Sbjct: 571 NADGRVIMYADKITGSMERAMRETERRRVKQLAYNEEHGITPATIKKNVDDILMGVYQGD 630 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + L AHL LR +M AA+NL FEEAAR+RDE+KRL++ Sbjct: 631 TDQSRVTAKVDK-PLVGANLAAHLDGLRDKMRKAAENLEFEEAARLRDEVKRLET 684 >gi|84502900|ref|ZP_01001013.1| UvrABC system protein B [Oceanicola batsensis HTCC2597] gi|84388883|gb|EAQ01753.1| UvrABC system protein B [Oceanicola batsensis HTCC2597] Length = 727 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/653 (64%), Positives = 525/653 (80%), Gaps = 1/653 (0%) Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M T++ P+GDQP AIA+L GI E+ Q+LLG TG+GKTFTMAKVIE QRPAI++APN Sbjct: 27 MNTEFDPAGDQPTAIAELSGGIDGGERDQVLLGATGTGKTFTMAKVIEETQRPAIILAPN 86 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INEQIDRMRHSA Sbjct: 87 KTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRHSA 146 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y M LK G + +Q+++++ LV QQY+R D Sbjct: 147 TRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKAGGTYDQRQVIADLVAQQYRRNDA 206 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG K + I++YAN Sbjct: 207 AFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGTKTNTFDQIRVYAN 266 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTP+PT+ A+ IK+EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C I Sbjct: 267 SHYVTPKPTMQQAVINIKKELRQRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCNGI 326 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV+IPQI GMYRGD+ RK TLAE+GF Sbjct: 327 ENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSIPQIGGMYRGDYRRKFTLAEHGF 386 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSCMDNRPL+FEEW+ +RP +I VSATPG+WE+EQ G+ EQ+IRPTGL+DP VEIR Sbjct: 387 RLPSCMDNRPLKFEEWDAMRPQSIYVSATPGNWEMEQTGGVFTEQVIRPTGLLDPQVEIR 446 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 + QV+D+ DE+ QG R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ T+ERI Sbjct: 447 PVKMQVDDLLDEVRKVTAQGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTIERI 506 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 507 EILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNA 566 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 +VI+YAD+IT S++ A+ ET RRREKQ+ +N++H I P ++++ + +++ + D Sbjct: 567 EGRVIMYADSITGSMERALAETERRREKQIAYNEEHGITPATIRKNVEDILAGLYKGDVD 626 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ ++ + +AHL LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 627 MNRVTAQVEKPMVGANL-QAHLDGLRADMRKAAENLEFEEAARLRDEVKRLEA 678 >gi|254511666|ref|ZP_05123733.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium KLH11] gi|221535377|gb|EEE38365.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium KLH11] Length = 728 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/655 (64%), Positives = 528/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ P+GDQP AI +L G+H E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 28 FVMHTEFAPAGDQPTAITELAAGVHEGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 88 PNKTLAAQLYGEFKGFFPENSVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK+G +Q+++++ LV QQY+R Sbjct: 148 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGKEYDQRQVMADLVAQQYRRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EI+P+HLED AW++S FG ++E+I+EF PLTG+K +E I++Y Sbjct: 208 DQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEQITEFDPLTGEKTDTMEHIRVY 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+MRL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 268 ANSHYVTPKPTMQQAIIGIKKELRMRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCN 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 328 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WE+EQ GI EQ+IRPTGL+DP VE Sbjct: 388 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGIFTEQVIRPTGLLDPEVE 447 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 448 IRPVSMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 508 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 567 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A++ET RRR KQ+ +N++H I P++VK+ + +V+ + D Sbjct: 568 NADGRVIMYADKITGSMERALNETNRRRAKQIAYNEEHGITPETVKKNVEDVLAGLYEGD 627 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR+QM AA+NL FEEAA IRDEIKRL++ Sbjct: 628 VDMNRVTATIDK-PMHGANLEAHLDGLREQMRKAAENLEFEEAANIRDEIKRLEA 681 >gi|332188833|ref|ZP_08390542.1| excinuclease ABC, B subunit [Sphingomonas sp. S17] gi|332011143|gb|EGI53239.1| excinuclease ABC, B subunit [Sphingomonas sp. S17] Length = 730 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/683 (64%), Positives = 544/683 (79%), Gaps = 5/683 (0%) Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172 D P + G + PHR S ++ F++ TDY SGDQPAAI +L + +K Q+ Sbjct: 10 DEP--ETGVSFIPHRP-SRPEKAEGGKRFELVTDYTASGDQPAAIRELTAAARAGDKDQV 66 Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY EFKNFFP+NAVEYFVSYYDYY Sbjct: 67 LLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKNFFPNNAVEYFVSYYDYY 126 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVPR+DTYIEKESSINE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS Sbjct: 127 QPEAYVPRSDTYIEKESSINESIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSA 186 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 MI LK G SV+Q+E++ LV QYKR D +RG FRV GD++EIFPSH ED AWRVS Sbjct: 187 MIFDLKKGQSVDQREIIRKLVALQYKRNDAAFMRGNFRVKGDNLEIFPSHYEDSAWRVSF 246 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++IEEI EF PLTG+K+ ++ +++IYANSHYVTP PT+ A++ IK EL RL ELE Sbjct: 247 FGDEIEEIVEFDPLTGKKVAHLNSVRIYANSHYVTPGPTMKQAVEAIKFELTERLKELEA 306 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EG+LLE QRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE+++LF Sbjct: 307 EGKLLERQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLPENAVLF 366 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 VDESHVTI QI+GM RGD RK TLAEYGFRLPS +DNRPLRF EW+ +RP T+ VSATP Sbjct: 367 VDESHVTIGQINGMSRGDHRRKITLAEYGFRLPSAIDNRPLRFNEWDAMRPQTVSVSATP 426 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 G+WE+EQ G+ VEQ+IRPTGL+DPPVEI+ QV+D+ E + G R L+T LTK Sbjct: 427 GNWEMEQTGGVFVEQVIRPTGLIDPPVEIKPVEEQVQDLIIEARKTTELGYRTLVTTLTK 486 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RMAEDLTEY++E I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIPECG Sbjct: 487 RMAEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPECG 546 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A+ ET+RRREKQ+ Sbjct: 547 LVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMSETSRRREKQM 606 Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772 +N +H I PQ+++ +I ++I + D T + ID + + +A+++ L K+M Sbjct: 607 AYNTEHGITPQTIRRQIGDIIAHVASGDQVT--VPIDEDRPHMVGHNLRAYIEELEKKMR 664 Query: 773 LAADNLNFEEAARIRDEIKRLKS 795 AA +L FEEA R+RDEI++L++ Sbjct: 665 KAAADLEFEEAGRLRDEIRQLEN 687 >gi|163736820|ref|ZP_02144238.1| excinuclease ABC, B subunit [Phaeobacter gallaeciensis BS107] gi|161389424|gb|EDQ13775.1| excinuclease ABC, B subunit [Phaeobacter gallaeciensis BS107] Length = 732 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ P+GDQP AI +L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 30 FVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 90 PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+++SVSCIYGIGSVE+YS M LK+GD +Q+++++ LV QQYKR Sbjct: 150 SATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGDEYDQRQVMADLVAQQYKRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K + I++Y Sbjct: 210 DQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGEKTGTFDQIRVY 269 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTL A+ IKEELKMRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 270 ANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD RK TLAE+ Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTLAEH 389 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEQSSGVFAEQVIRPTGLLDPQVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TLE Sbjct: 450 IRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR+KQ+ +N++H I P +VK+ + +V+ + D Sbjct: 570 NAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEEHGITPATVKKNVEDVLAGLYAGD 629 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR+QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 630 VDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAENLEFEEAARLRDEVKRLEA 683 >gi|329849766|ref|ZP_08264612.1| excinuclease ABC, B subunit [Asticcacaulis biprosthecum C19] gi|328841677|gb|EGF91247.1| excinuclease ABC, B subunit [Asticcacaulis biprosthecum C19] Length = 723 Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/678 (64%), Positives = 538/678 (79%), Gaps = 7/678 (1%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 W PHR S+ F++ Y P+GDQP AIA+L+ G+++RE Q+LLGVTGSGKT Sbjct: 31 WVPHRPER-PAKSEGGKRFRLAAPYEPAGDQPTAIAELVGGVNAREHDQVLLGVTGSGKT 89 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 +TMAK+IE QRPA+++A NK LAAQL+SEFK+FFP NAVEYFVSYYDYYQPEAYVPRTD Sbjct: 90 YTMAKIIEQTQRPALILAHNKTLAAQLFSEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTD 149 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEK+SS+NEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M +LK+G S Sbjct: 150 TYIEKDSSVNEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFELKVGQS 209 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 +++ +L + LV QYKR D RGTFR GD IEIFP+H ED AWR++MFG++IE + E Sbjct: 210 IDEGQLRADLVALQYKRNDAAFERGTFRRRGDVIEIFPAHYEDRAWRINMFGDEIESMHE 269 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F PLTG+KI +++ +K+YA SHYVTPRPTLN A+ IK+ELK+RL +L EG+LLEAQRL Sbjct: 270 FDPLTGRKIVDLQDLKVYAASHYVTPRPTLNQAIDGIKKELKLRLDQLHGEGKLLEAQRL 329 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 EQR T+DLEM++ TG+C IENYSRYLTGR G PPPT FEY+P+++LLFVDESHV++PQ Sbjct: 330 EQRTTFDLEMMQATGACAGIENYSRYLTGRGAGAPPPTFFEYLPDNALLFVDESHVSVPQ 389 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 I GMYRGDF RK+ LAEYGFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG WE+E+ G Sbjct: 390 IGGMYRGDFARKSVLAEYGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGKWEMERTAG 449 Query: 543 IIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 + EQ+IRPTGL+DPPVEIR QV+DV E+ A+ G R L+TVLTK+MAE+L Sbjct: 450 VFAEQVIRPTGLIDPPVEIRPVHKDGFNQVDDVIAEVREVAKHGYRSLITVLTKKMAENL 509 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 T+Y++E+ IRVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDIPECG VAILD Sbjct: 510 TDYMHEQGIRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDIPECGFVAILD 569 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A+ ET RRREKQ+ +N +H Sbjct: 570 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERALAETARRREKQMAYNVEH 629 Query: 719 NINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 I P+SVK I +++D P D + + + +A LK L +M AA Sbjct: 630 GITPESVKRGISDILDSPFEKGDRVQIPMGVAEKDSKPFMGSNFQATLKDLETKMREAAG 689 Query: 777 NLNFEEAARIRDEIKRLK 794 NL FE AAR+RDEIKRLK Sbjct: 690 NLEFETAARLRDEIKRLK 707 >gi|99079985|ref|YP_612139.1| excinuclease ABC subunit B [Ruegeria sp. TM1040] gi|99036265|gb|ABF62877.1| Excinuclease ABC subunit B [Ruegeria sp. TM1040] Length = 730 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F MQT + P+GDQP AIA+L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 30 FVMQTAFSPAGDQPTAIAELSQGVLDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH Sbjct: 90 PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+YS M L +G +Q+++++ LV QQYKR Sbjct: 150 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLIVGQDYDQRQIMADLVAQQYKRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++ + E I++Y Sbjct: 210 DQAFQRGAFRVRGDTLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGERTGSFEKIRVY 269 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTLN A+ IK EL+ RL L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 270 ANSHYVTPKPTLNQAVISIKNELRQRLDNLVSEGKLLEAQRLEQRTNFDIEMLEATGHCN 329 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD RK TLAE+ Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKMTLAEH 389 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQ+IRPTGL+DP VE Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQSGGVFAEQVIRPTGLLDPEVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI +G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E Sbjct: 450 IRPVGMQVDDLLDEIRDVTARGYRTLATVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 510 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S++ AI ET RRREKQ+ +N++H I P++VK+ + +V+ + D Sbjct: 570 NSEGKVIMYADRITGSMERAIAETNRRREKQIAYNEEHGITPETVKKNVDDVLAGLYEGD 629 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + L +AHL LR+QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 630 TDMSRVTATIDK-PLHGANFEAHLDGLREQMRKAAENLEFEEAARLRDEVKRLEA 683 >gi|294676922|ref|YP_003577537.1| UvrABC system protein B [Rhodobacter capsulatus SB 1003] gi|294475742|gb|ADE85130.1| UvrABC system protein B [Rhodobacter capsulatus SB 1003] Length = 727 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/655 (65%), Positives = 526/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M++++ P+GDQP AIA++ K + + E+ Q+LLG TG+GKT+TMAKVIEA QRPAI++A Sbjct: 27 FVMKSEFSPAGDQPTAIAEISKAVLAGERDQVLLGATGTGKTYTMAKVIEATQRPAIILA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV RTDTYIEKES INEQIDRMRH Sbjct: 87 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARTDTYIEKESMINEQIDRMRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M L +G E ++ L+ LV QQYKR Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLSVGGLYESRKFLADLVAQQYKRL 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GD+++++P+HLED AWR S FG ++E I EF PLTG + + + I+IY Sbjct: 207 DAAFQRGSFRVKGDTVDLWPAHLEDRAWRFSFFGEELEAIIEFDPLTGARTDSFQQIRIY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVT RPTL A K I+ EL RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 267 ANSHYVTRRPTLQQATKSIRIELAQRLKQLHDEGKLLEAQRLEQRTNFDLEMLEATGVCN 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHVT+PQI GMYRGD+ RK TLAE+ Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAPWELEQTGGVFTEQVIRPTGLLDPEVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DEI A +GLR+L+T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E Sbjct: 447 IRPVETQVDDLLDEIRKVAARGLRVLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 507 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S+Q A++ET RRREKQ+ +N +H I PQ+V++ + +V+ + D Sbjct: 567 NADGRVIMYADRITGSMQRALNETNRRREKQIAYNLEHGITPQTVRKNVEDVLAGLWAGD 626 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + ++ AHL++LR +M AA+NL FEEAAR+RDE+KRL++ Sbjct: 627 TDMARVTAKVEGPAVGSNLA-AHLEALRTKMRKAAENLEFEEAARLRDEVKRLEA 680 >gi|119384053|ref|YP_915109.1| excinuclease ABC subunit B [Paracoccus denitrificans PD1222] gi|119373820|gb|ABL69413.1| Excinuclease ABC subunit B [Paracoccus denitrificans PD1222] Length = 741 Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/655 (64%), Positives = 524/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M++++ P+GDQP AIA+L +G+ + E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 40 FVMRSEFQPAGDQPTAIAELSQGVRAGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 99 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE IDRMRH Sbjct: 100 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEAIDRMRH 159 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M + +G +Q+E L+ LV QQY+R Sbjct: 160 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDMVVGQLYDQREFLAELVAQQYRRL 219 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +E++P+HLED AWR FGN++E I+EF PLTG K + + I+IY Sbjct: 220 DAAFQRGGFRVRGDLVEVWPAHLEDRAWRFDFFGNELESITEFDPLTGAKTDSFKQIRIY 279 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTL A+K I+ EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 280 ANSHYVTPRPTLQQAIKGIRTELQTRLKQLADEGKLLEAQRLEQRTNFDLEMLEATGVCN 339 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGDF RK TLAE+ Sbjct: 340 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDFRRKFTLAEH 399 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WEL+Q G+ EQ+IRPTGL+DP VE Sbjct: 400 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAQWELDQTGGVFTEQVIRPTGLLDPQVE 459 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G+R L+T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E Sbjct: 460 IRPVEMQVDDLLDEVRKVAAAGMRTLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 519 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 520 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 579 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I PQ+V++ + +V+ + D Sbjct: 580 NADGRVIMYADRITGSMERAMAETERRRQKQVAYNEAHGITPQTVRKNVEDVLAGLWQGD 639 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I+ ++ + AHL +LR QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 640 TDQARITTRVEKPMVGANLA-AHLDALRAQMRKAAENLEFEEAARLRDEVKRLEA 693 >gi|126727445|ref|ZP_01743279.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2150] gi|126703225|gb|EBA02324.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2150] Length = 727 Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/654 (65%), Positives = 525/654 (80%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T + P+GDQP AIA+L +GI E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 25 FVLHTPFEPAGDQPTAIAELKEGILDGERNQVLLGATGTGKTFTMAKLIEETQRPAIILA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 85 PNKTLAAQLYGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+V+SVSCIYGIGSVE+Y M + L G S +Q++++ LV QQYKR Sbjct: 145 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTLDLVAGKSYKQRDVIMDLVAQQYKRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP+HLED AW++S FG+++E I+EF PLTGQK +E I++Y Sbjct: 205 DAAFARGTFRVRGDSLEIFPAHLEDRAWKLSFFGDELETITEFDPLTGQKTGTMEQIRVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTL A+ IKEEL++RL ++E +G+LLEAQRLEQR +DLEMLE G C Sbjct: 265 ANSHYVTPKPTLRQAIVSIKEELRLRLAQMEADGKLLEAQRLEQRTHFDLEMLEAQGFCN 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP T+ VSATP +WELEQ G+ EQIIRPTGL+DP +E Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQTVFVSATPQNWELEQSGGVFAEQIIRPTGLLDPVIE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DE+ A+QGLR L+T LTKRMAEDLTEY++E+ RVRYMHS++ TLE Sbjct: 445 IRPVGTQVDDLLDEVGKMAEQGLRTLVTTLTKRMAEDLTEYMHEQGTRVRYMHSDIDTLE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRREKQ +N +H I P +VK+ + +V+ + D Sbjct: 565 NAGGRVIMYADRITGSMERAMGETERRREKQNAYNIEHGITPATVKKNVEDVLAGLYNGD 624 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ + ++ A L+ LR M AA+NL FEEAAR+RDE+KRL+ Sbjct: 625 TDQSRVTTKVDKPAMGANLA-AVLEGLRTDMRKAAENLEFEEAARLRDEVKRLE 677 >gi|16127211|ref|NP_421775.1| excinuclease ABC subunit B [Caulobacter crescentus CB15] gi|221236012|ref|YP_002518449.1| excinuclease ABC subunit B [Caulobacter crescentus NA1000] gi|13424613|gb|AAK24943.1| excinuclease ABC, subunit B [Caulobacter crescentus CB15] gi|220965185|gb|ACL96541.1| excinuclease ABC subunit B [Caulobacter crescentus NA1000] Length = 749 Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/679 (65%), Positives = 540/679 (79%), Gaps = 7/679 (1%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 +WTPHR S + S+ F++ +DY P+GDQP AIA+L++G+ + ++ Q+LLGVTGSGK Sbjct: 29 LWTPHRP-SRPDKSEGGKKFKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGK 87 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFTMA+VI QRPA+++APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVPRT Sbjct: 88 TFTMAQVIARTQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRT 147 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M L++G Sbjct: 148 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 207 Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361 V++K+L++ LV QQYKR D RGTFR GD+IEIFP+H ED AWRV+MFG+++E +S Sbjct: 208 RVDEKQLIADLVAQQYKRNDQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALS 267 Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421 EF LTG+K ++E IK+YANSH+VTPRPTL A+ I++ELK RL L G+LLEAQR Sbjct: 268 EFDTLTGKKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQR 327 Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481 LEQR T+DLEM+ETTGSC IENYSRYL+GR GEPPPT FEYIP+++LLF DESH T+P Sbjct: 328 LEQRTTFDLEMIETTGSCAGIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVP 387 Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541 QI MY+GD +RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP +WELE+ Sbjct: 388 QIGAMYKGDRNRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAG 447 Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 G+ EQ+IRPTGL+DPPVE+R +QV+DV DEI Q+G R L+TVLTK+MAED Sbjct: 448 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAED 507 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTEYL E+ IRVRYMHS+V T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL Sbjct: 508 LTEYLTEQGIRVRYMHSDVDTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 567 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ A+ ET RRREKQ +N + Sbjct: 568 DADKEGFLRSETSLIQTIGRAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLE 627 Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAA 775 H I P+SVK I ++++ P D + + + S KA LK L +M AA Sbjct: 628 HGITPESVKRDIKDILNSPYERGDRVLVPMGMSETDDRPFSGDNFKAALKDLEAKMREAA 687 Query: 776 DNLNFEEAARIRDEIKRLK 794 NL FE AAR+RDEIKR+K Sbjct: 688 ANLEFETAARLRDEIKRMK 706 >gi|86140157|ref|ZP_01058719.1| excinuclease ABC subunit B [Roseobacter sp. MED193] gi|85823094|gb|EAQ43307.1| excinuclease ABC subunit B [Roseobacter sp. MED193] Length = 741 Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/655 (63%), Positives = 529/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ P+GDQP AIA+L +G+ E+ Q+LLG TG+GKTFTMAK+I QRPAI++A Sbjct: 38 FVMHTEFSPAGDQPTAIAELSEGVKEGERNQVLLGATGTGKTFTMAKIIAETQRPAIILA 97 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 98 PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 157 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+YS M LK+G+ +Q+++++ LV QQYKR Sbjct: 158 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGEEYDQRQVMADLVAQQYKRN 217 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++ E I++Y Sbjct: 218 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGERTGAFEQIRVY 277 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTLN A+ IK+ELK RL + EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 278 ANSHYVTPKPTLNQAVISIKQELKHRLDQFNGEGKLLEAQRLEQRCNFDIEMLEATGHCN 337 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK+TLAE+ Sbjct: 338 GIENYSRYLTGRGPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKSTLAEH 397 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE++Q G+ EQ+IRPTGL++P +E Sbjct: 398 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMDQAGGVFTEQVIRPTGLLEPEIE 457 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+D+ DE+ + G+R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 458 IRPVKMQVDDLLDEVRKVTENGMRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 517 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 518 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 577 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I P +VK+ + +V+ + D Sbjct: 578 NAEGRVIMYADKITGSMERALGETNRRREKQIAYNLEHGITPATVKKNVEDVLAGLYQGD 637 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + + +AHL LR +M AA+NL FEEAAR+RDE+KRL++ Sbjct: 638 VDMNRVTANIDK-PMHGANLEAHLNGLRDEMRKAAENLEFEEAARLRDEVKRLEA 691 >gi|94498506|ref|ZP_01305062.1| excinuclease ABC subunit B [Sphingomonas sp. SKA58] gi|94422049|gb|EAT07094.1| excinuclease ABC subunit B [Sphingomonas sp. SKA58] Length = 757 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/695 (62%), Positives = 544/695 (78%), Gaps = 2/695 (0%) Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160 P A+ I++D + G+ + PHR + S+ F + +DY PSGDQP AIA+L Sbjct: 26 PYQGAMTIQIRTDLSEPETGQSFVPHRP-ARPEKSEGGRPFTLVSDYEPSGDQPTAIAEL 84 Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 + EK Q+LLGVTGSGKTFTMAK IEA+QRPA+++APNKILAAQLY EFK+FFP N Sbjct: 85 VAAARQGEKDQVLLGVTGSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDN 144 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 AVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC Sbjct: 145 AVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSC 204 Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 +YGIGSVE+YS M +K G +Q+E++ LV QYKR D G RG FRV GD++E+FP Sbjct: 205 LYGIGSVETYSAMTFSMKKGGVEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEVFP 264 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 SH ED AWRVS FGN+IE+I EF PLTG+KI +++ +K++ NSH+VTP PTL AM+ I+ Sbjct: 265 SHYEDTAWRVSFFGNEIEDIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIR 324 Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460 EL RL EL EG+LLEAQRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPT Sbjct: 325 FELAERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPT 384 Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520 LFEY+PE+++LFVDESH T+PQI M RGD RK TLAEYGFRLPSC+DNRPLRF EW+ Sbjct: 385 LFEYLPENAVLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDA 444 Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580 +RP T+ VSATPG+WE+EQ G+ EQ+IRPTGL+DPPVEI+ QV+D+ +E A Sbjct: 445 MRPQTVSVSATPGTWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAA 504 Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 QG R L+T LTKRMAEDLTE+++E I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GIN Sbjct: 505 QGYRTLVTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGIN 564 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700 LLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV +VILYAD IT S++ A Sbjct: 565 LLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADRITGSMERA 624 Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760 ++ET+RRREKQ +N +H I P ++K +I ++I + +D T + +D + + Sbjct: 625 LNETSRRREKQQAYNLEHGITPTTIKRQIGDIIAHVASKDQVTVDTGLD-DRPHMVGHNL 683 Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A+++ L K+M AA +L FEEA RIRDEI++L++ Sbjct: 684 RAYIEDLEKKMRAAAADLEFEEAGRIRDEIRKLEA 718 >gi|103485770|ref|YP_615331.1| excinuclease ABC subunit B [Sphingopyxis alaskensis RB2256] gi|98975847|gb|ABF51998.1| Excinuclease ABC subunit B [Sphingopyxis alaskensis RB2256] Length = 728 Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/655 (66%), Positives = 528/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L++ + E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++A Sbjct: 35 FELVSDYEPAGDQPTAIRELVETARTGERDQVLLGVTGSGKTFTMAKVIEELQRPALILA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH Sbjct: 95 PNKILAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI LK G + +E++ LV QYKR Sbjct: 155 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDLKKGQVADNREIIRKLVALQYKRN 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GDS+EIFPSH ED+AWRVS FG++IEEI+EF PLTG+KI ++ +I+IY Sbjct: 215 DQAFARGNFRVRGDSLEIFPSHYEDMAWRVSFFGDEIEEITEFDPLTGKKIASLNSIRIY 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP PTL A + I+ EL RL ELE EGRLLEAQRLEQR +DLEM+ TGSC Sbjct: 275 ANSHYVTPGPTLKQATEAIRHELAERLKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCA 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPPPTLFEY+P+++LLFVDESH TIPQI M +GD RK TLAEY Sbjct: 335 GIENYSRFLTGRLPGEPPPTLFEYLPDNALLFVDESHQTIPQIGAMSKGDHRRKITLAEY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF EW+ +RP TI VSATPG+WE+E+ QG+ EQ+IRPTGL+DPPVE Sbjct: 395 GFRLPSCIDNRPLRFAEWDMMRPQTISVSATPGTWEMERTQGVFAEQVIRPTGLIDPPVE 454 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A G R L+T LTKRMAEDLTE+L+E ++VRYMHS+V+TLE Sbjct: 455 IRPVEEQVDDLIAEAKKTAAAGYRTLVTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLE 514 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 515 RIEIIRDLRLGVFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 574 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VILYAD IT S++ A+ ET RRREKQ +N+ H I P ++K I ++I + +D Sbjct: 575 NVDGRVILYADRITGSMERALRETDRRREKQKAYNEAHGITPTTIKRNIGDIIAHVASKD 634 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +I D + + +A+++ L K+M AA +L FEEA R+RDEI++L++ Sbjct: 635 GVVIDIGED-KPAHMVGHNLRAYIQELEKKMRDAAADLEFEEAGRLRDEIRKLEA 688 >gi|56695458|ref|YP_165806.1| excinuclease ABC subunit B [Ruegeria pomeroyi DSS-3] gi|56677195|gb|AAV93861.1| UvrABC system protein B [Ruegeria pomeroyi DSS-3] Length = 732 Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F MQT++ P+GDQP AIA+L +G++ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 32 FVMQTEFQPAGDQPTAIAELTQGVNEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+Y M LK+G +Q+++++ LV QQYKR Sbjct: 152 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKVGGEYDQRQIMADLVAQQYKRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+E++P+HLED AW++S FG ++E I+EF PLTGQK + I++Y Sbjct: 212 DQAFQRGSFRVRGDSLEVWPAHLEDRAWKLSFFGEELEAITEFDPLTGQKTDTFDQIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 272 ANSHYVTPKPTMQQAIIGIKQELRQRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQ+IRPTGL+DP VE Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQSGGVFTEQVIRPTGLLDPQVE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A QG R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 452 IRPVEMQVDDLLDEVRKMADQGFRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 512 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR KQ+ +N++H I P +VK+ + +V+ + D Sbjct: 572 NAEGRVIMYADRITGSMERALGETDRRRAKQIAYNEEHGITPATVKKNVEDVLAGLYKGD 631 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + L +A L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 632 TDMSRVTAKIDK-PLHGGNLEAVLDGLRADMRKAAENLEFEEAARLRDEVKRLEA 685 >gi|149914354|ref|ZP_01902885.1| excinuclease ABC subunit B [Roseobacter sp. AzwK-3b] gi|149811873|gb|EDM71706.1| excinuclease ABC subunit B [Roseobacter sp. AzwK-3b] Length = 732 Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/655 (63%), Positives = 528/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M T++ P+GDQP AIA+L G+ S E+ Q+LLG TG+GKT+TMAKVIE QRPAI++A Sbjct: 32 FEMVTEFQPAGDQPTAIAELSSGVLSGERNQVLLGATGTGKTYTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK+G +Q+++++ LV QQY+R Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGTEYDQRKVMADLVAQQYRRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RG+FRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG+K + E I++Y Sbjct: 212 DAGFQRGSFRVRGDSLEIWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDSFEQIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ AM I++EL+ RL +L EG+LLEAQRLEQR ++DLEMLE TG C Sbjct: 272 ANSHYVTPKPTMQQAMIGIRKELRQRLDQLVAEGKLLEAQRLEQRTSFDLEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WE+EQ G+ EQ+IRPTGL+DP +E Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGVFTEQVIRPTGLLDPQIE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ + G R L T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E Sbjct: 452 IRPVEMQVDDLLDEVRRVSAAGYRTLCTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S+Q A+DET RRR KQ+ +N++H I P +V++ + +++ + D Sbjct: 572 NADGRVIMYADRITGSMQRALDETDRRRAKQIAYNEEHGITPATVRKNVEDILAGLYKGD 631 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR +M AA+NL FEEAAR+RDE+KRL++ Sbjct: 632 VDMNRVTATVDK-PMVGSNLQAHLDGLRTEMRKAAENLEFEEAARLRDEVKRLEA 685 >gi|254419582|ref|ZP_05033306.1| excinuclease ABC, B subunit [Brevundimonas sp. BAL3] gi|196185759|gb|EDX80735.1| excinuclease ABC, B subunit [Brevundimonas sp. BAL3] Length = 780 Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/678 (64%), Positives = 530/678 (78%), Gaps = 8/678 (1%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 W PHR + K F+++T Y P+GDQPAAIA+L+ + ++ Q+LLGVTGSGKT Sbjct: 62 WVPHRP--SHEGKKKGGRFRLETQYTPAGDQPAAIAELVAQAEAGDRDQVLLGVTGSGKT 119 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMAKVIE QRPA+++APNK LAAQLYSEFK+FFP NAVEYFVSYYDYYQPEAYVPRTD Sbjct: 120 FTMAKVIEQTQRPALILAPNKTLAAQLYSEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTD 179 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEK+SSINEQIDRMRHSATR++LER D IVV+SVSCIYGIGSVE+Y+ M LK+GD Sbjct: 180 TYIEKDSSINEQIDRMRHSATRAILEREDVIVVASVSCIYGIGSVETYTAMTFTLKVGDQ 239 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 +++ +L + L+ QYKR D+ RG FR GD IEIFP HLED AWR+S+FG+++E I E Sbjct: 240 IDEAKLRADLIALQYKRNDLNFDRGMFRKRGDVIEIFPVHLEDRAWRISLFGDELEAIQE 299 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F PLTG+K ++ I +YA SHYVTPRPTLN A + IK ELK L + + G+LLEAQRL Sbjct: 300 FDPLTGKKTADLTEITVYAASHYVTPRPTLNQATQGIKAELKETLDWMIENGKLLEAQRL 359 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 EQR +DLEM+E TGSC IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESHVTI Q Sbjct: 360 EQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHVTIGQ 419 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 I+GM+RGD+ RK+TLAEYGFRLPSC+DNRPL+FEEW +RP T+ VSATPG+WE++Q G Sbjct: 420 INGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFEEWEAMRPQTVHVSATPGAWEMDQAGG 479 Query: 543 IIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 + VEQ+IRPTGL+DPPVEIR R QV+DV DE+ + G R L+T LTK+MAEDL Sbjct: 480 VFVEQVIRPTGLIDPPVEIRPVSGQTRNQVDDVIDEVKATTRAGYRSLVTTLTKKMAEDL 539 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TEY++E+ IRVRYMHS+V TLERIEI+RDLRLG FD L+GINLLREGLDIPECGLVAILD Sbjct: 540 TEYMHEQGIRVRYMHSDVDTLERIEILRDLRLGSFDCLIGINLLREGLDIPECGLVAILD 599 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSLIQTIGRAARN++ +VILYAD +T S++ AI ET RRRE+Q+ +N +H Sbjct: 600 ADKEGFLRSETSLIQTIGRAARNIDGRVILYADRMTGSMERAIAETDRRRERQMAYNTEH 659 Query: 719 NINPQSVKEKIMEVIDPIL--LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 I P+SVK I E++D E T + +A LK L +M AA Sbjct: 660 GITPESVKRDIKELMDSPYESREMDRLTRPGVAEASKPFVGSNFQAALKDLEGRMREAAS 719 Query: 777 NLNFEEAARIRDEIKRLK 794 NL FEEA R+RDEIKR+K Sbjct: 720 NLEFEEAGRLRDEIKRMK 737 >gi|126737418|ref|ZP_01753153.1| excinuclease ABC subunit B [Roseobacter sp. SK209-2-6] gi|126722003|gb|EBA18706.1| excinuclease ABC subunit B [Roseobacter sp. SK209-2-6] Length = 732 Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/655 (64%), Positives = 526/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T + P+GDQP AIA+L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 30 FVMNTTFDPAGDQPTAIAELSQGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH Sbjct: 90 PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+YS M LK G+ +Q+++++ LV QQYKR Sbjct: 150 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLKAGEMYDQRQIMADLVAQQYKRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++ E I+IY Sbjct: 210 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGERTGTFEQIRIY 269 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTLN A+ IK+EL+ RL L +G+LLEAQRLEQR +D+EMLE TG C Sbjct: 270 ANSHYVTPKPTLNQAVVSIKQELRQRLDNLVGDGKLLEAQRLEQRTNFDIEMLEATGHCN 329 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD RK TLAE+ Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTLAEH 389 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WEL+Q G+ EQ+IRPTGL+DP VE Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSGWELDQSGGVFAEQVIRPTGLLDPEVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+D+ DEI + G R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 450 IRPVKMQVDDLLDEIRKVSADGFRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I P++VK+ + +V+ + D Sbjct: 570 NADGRVIMYADKITGSMERALGETNRRREKQIAYNLEHGITPETVKKNVEDVLAGLYEGD 629 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +AHL LR +M AA+NL FEEAAR+RDE+KRL++ Sbjct: 630 VDMNRVTATVDK-PMHGANLEAHLAGLRDEMRKAAENLEFEEAARLRDEVKRLEA 683 >gi|119384328|ref|YP_915384.1| excinuclease ABC subunit B [Paracoccus denitrificans PD1222] gi|119374095|gb|ABL69688.1| Excinuclease ABC subunit B [Paracoccus denitrificans PD1222] Length = 741 Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/655 (64%), Positives = 523/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M++++ P+GDQP AIA+L +G+ + E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 40 FVMRSEFQPAGDQPTAIAELSQGVRAGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 99 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE IDRMRH Sbjct: 100 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEAIDRMRH 159 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M + +G +Q+E L+ LV QQY+R Sbjct: 160 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDMVVGQLYDQREFLAELVAQQYRRL 219 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G FRV GD +E++P+HLED AWR FGN++E I+EF PLTG K + + I+IY Sbjct: 220 DAAFQCGGFRVRGDLVEVWPAHLEDRAWRFDFFGNELESITEFDPLTGAKTDSFKQIRIY 279 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTL A+K I+ EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 280 ANSHYVTPRPTLQQAIKGIRTELQTRLKQLADEGKLLEAQRLEQRTNFDLEMLEATGVCN 339 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGDF RK TLAE+ Sbjct: 340 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDFRRKFTLAEH 399 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WEL+Q G+ EQ+IRPTGL+DP VE Sbjct: 400 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAQWELDQTGGVFTEQVIRPTGLLDPQVE 459 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G+R L+T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E Sbjct: 460 IRPVEMQVDDLLDEVRKVAAAGMRTLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 519 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 520 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 579 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I PQ+V++ + +V+ + D Sbjct: 580 NADGRVIMYADRITGSMERAMAETERRRQKQVAYNEAHGITPQTVRKNVEDVLAGLWQGD 639 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I+ ++ + AHL +LR QM AA+NL FEEAAR+RDE+KRL++ Sbjct: 640 TDQARITTRVEKPMVGANLA-AHLDALRAQMRKAAENLEFEEAARLRDEVKRLEA 693 >gi|83944406|ref|ZP_00956860.1| UvrABC system protein B [Sulfitobacter sp. EE-36] gi|83844729|gb|EAP82612.1| UvrABC system protein B [Sulfitobacter sp. EE-36] Length = 738 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/655 (64%), Positives = 527/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T++ P+GDQP AI +L +G+ S E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 36 FKLATEFEPAGDQPTAIKELSEGVRSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 95 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 96 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 155 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+Y M LK G++ +Q+++++ L+ Q YKR Sbjct: 156 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKTGNNYDQRQVIADLIAQAYKRN 215 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K + + I++Y Sbjct: 216 DAAFQRGTFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGEKTGSFDQIRVY 275 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+MRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 276 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVAEGKLLEAQRLEQRCNFDIEMLEATGVCN 335 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 336 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 395 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 396 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQSGGVFTEQIIRPTGLIDPKIE 455 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 456 IRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 515 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 516 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 575 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRR KQL +N++H I P +VK+ + +++ + D Sbjct: 576 NAEGRVIMYADRITGSMERAIGETDRRRAKQLAYNEEHGITPTTVKKNVDDILAGLYKGD 635 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + L+ + L LR M AA+NL FEEAAR+RDE+KRL+S Sbjct: 636 VDMSRVTAKIEN-PLAGGNLQTVLDGLRTDMRRAAENLEFEEAARLRDEVKRLES 689 >gi|83592469|ref|YP_426221.1| excinuclease ABC subunit B [Rhodospirillum rubrum ATCC 11170] gi|83575383|gb|ABC21934.1| Excinuclease ABC subunit B [Rhodospirillum rubrum ATCC 11170] Length = 733 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/657 (64%), Positives = 534/657 (81%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIA+LL+G+ ++++ Q+LLGVTGSGKTFTMA+VI M RP +++A Sbjct: 38 FRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILA 97 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH Sbjct: 98 PNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 157 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LLER D I+V+SVSCIYGIGSVESYS+MI+ +K+G ++ + +LL +LV+ Q+ R Sbjct: 158 AATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTRN 217 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GDS+EIFP+H ED AWRVS++G++IE + EF PLTG+ +++ + +Y Sbjct: 218 DIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVTVY 277 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VTPRP L+ A++ IK ELK L +G++LEAQRLEQR T+DLEM+E TG C+ Sbjct: 278 PASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHCK 337 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 SIENYSR+LTGR PG+PPPTLFEY+PED+LLFVDESHV +PQI GM+RGDF+RK+ LAE+ Sbjct: 338 SIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAEF 397 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+FEEW+ +RP +I VSATPG WELE+ G++ EQ+IRPTGLVDP Sbjct: 398 GFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVCI 457 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E+ A +G R+L+T LTKRM+EDLTEYL E+ +RVRYMHS+++TLE Sbjct: 458 IRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETLE 517 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 518 RIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 577 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYAD +T S+ AI+ET+RRR++Q ++N H I P++V+ +I +V+ + +D Sbjct: 578 NVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEKD 637 Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 TT +S D Q L K + HL L K+M AA +L FEEA R+RDEI+RL++ Sbjct: 638 YVTVTTGVSGDNQ---LVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIRRLEA 691 >gi|84683839|ref|ZP_01011742.1| excinuclease ABC subunit B [Maritimibacter alkaliphilus HTCC2654] gi|84668582|gb|EAQ15049.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2654] Length = 721 Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/655 (63%), Positives = 530/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M T++ P+GDQP AIA+L GI + E+ Q+LLG TG+GKT+TMAK+IE QRPAI++A Sbjct: 25 FRMNTEFKPAGDQPTAIAELSDGIKNGEQDQVLLGATGTGKTYTMAKIIEETQRPAIILA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKES INEQIDRMRH Sbjct: 85 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESQINEQIDRMRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+++SVSCIYGIGS E+Y+ M + +G+ +Q+ ++ LV QQY+R Sbjct: 145 SATRSLLERDDVIIIASVSCIYGIGSPETYTAMTQDITVGEEYDQRAMMKDLVAQQYRRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EI+PSHLED WR+S FG ++E I+EF LTG K ++E +++Y Sbjct: 205 DNAFDRGSFRVRGDSLEIWPSHLEDRGWRLSFFGEELESITEFDTLTGAKTDSLEKVRVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP PTL A++ IK+EL +RL E EK+G+LLEAQRLEQR +DLEMLE +G C Sbjct: 265 ANSHYVTPTPTLRQAIEGIKKELTLRLAEFEKDGKLLEAQRLEQRTRFDLEMLEASGFCN 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG+WELE+ G+ EQ+IRPTGL+DP VE Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGNWELERTGGVFTEQVIRPTGLLDPQVE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ AQ G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 445 IRPVEMQVDDLLDEVRKVAQAGYRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRR +Q+ +N++H I P +V++ + +V+ + D Sbjct: 565 NADGRVIMYADRITGSMERALAETDRRRARQIAYNEEHGITPATVRKNVEDVLAGLYAGD 624 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ ++ + + +AHL+ L++ M AA+NL FEEAAR+RDE+KRL++ Sbjct: 625 TDMNRVTATVDKVGIGQNL-QAHLEGLKEDMRKAAENLEFEEAARLRDEVKRLEA 678 >gi|83953447|ref|ZP_00962169.1| UvrABC system protein B [Sulfitobacter sp. NAS-14.1] gi|83842415|gb|EAP81583.1| UvrABC system protein B [Sulfitobacter sp. NAS-14.1] Length = 738 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/655 (64%), Positives = 526/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T++ P+GDQP AI +L +G+ S E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 36 FKLATEFEPAGDQPTAIKELSEGVRSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 95 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 96 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 155 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+Y M LK G++ +Q+++++ L+ Q YKR Sbjct: 156 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKTGNNYDQRQVIADLIAQAYKRN 215 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K + + I++Y Sbjct: 216 DAAFQRGTFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGEKTGSFDQIRVY 275 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+MRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 276 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVAEGKLLEAQRLEQRCNFDIEMLEATGVCN 335 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 336 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 395 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 396 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQSGGVFTEQIIRPTGLIDPKIE 455 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 456 IRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 515 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 516 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 575 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRR KQL +N++H I P +VK+ + +++ + D Sbjct: 576 NAEGRVIMYADRITGSMERAIGETDRRRAKQLAYNEEHGITPTTVKKNVDDILAGLYKGD 635 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ L+ + L LR M AA+NL FEEAAR+RDE+KRL+S Sbjct: 636 VDMSRVTAKIDN-PLAGGNLQTVLDGLRTDMRKAAENLEFEEAARLRDEVKRLES 689 >gi|294013266|ref|YP_003546726.1| excinuclease ABC subunit B [Sphingobium japonicum UT26S] gi|292676596|dbj|BAI98114.1| excinuclease ABC subunit B [Sphingobium japonicum UT26S] Length = 727 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/683 (63%), Positives = 540/683 (79%), Gaps = 4/683 (0%) Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172 D P + G+ + PHR + S+ F++ +DY PSGDQP AIA+L++ EK Q+ Sbjct: 10 DEP--ETGEGFVPHRP-ARPEKSEGGRPFKLVSDYEPSGDQPTAIAELVETALQGEKDQV 66 Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFTMAKVIEA+QRPA+V+APNKILAAQLY EFK+FFP NAVEYFVSYYDYY Sbjct: 67 LLGVTGSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFKSFFPENAVEYFVSYYDYY 126 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D ++V+SVSC+YGIGSVE+YS Sbjct: 127 QPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIGSVETYSA 186 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 M +K G +Q+E++ LV QYKR D RG FRV GD++EIFPSH ED AWRVS Sbjct: 187 MTFAMKKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYEDTAWRVSF 246 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FGN+IE+I EF PLTG+K+ +++ +K++ NSH+VTP PTL AM+ I+ EL RL EL Sbjct: 247 FGNEIEDIVEFDPLTGKKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAERLKELTA 306 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EG+LLEAQRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE++LLF Sbjct: 307 EGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLF 366 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 VDESH T+PQI M RGD RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VSATP Sbjct: 367 VDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVSVSATP 426 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 G WE+EQ G EQ+IRPTGL+DPPVEI+ QV+D+ E A++G R L+T LTK Sbjct: 427 GPWEMEQTGGAFSEQVIRPTGLIDPPVEIKPVEDQVDDLIHEAKETAKKGYRTLVTTLTK 486 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RMAEDLTE+++E I+VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIPECG Sbjct: 487 RMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECG 546 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A++ET+RRREKQ+ Sbjct: 547 LVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERALNETSRRREKQM 606 Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772 +N +H I P ++K I ++I + +D T + ++ + L +A+++ L K+M Sbjct: 607 AYNLEHGITPTTIKRNIGDIIAHVASKDQVTVDTGLE-DRPHLVGHNLRAYIEDLEKKMR 665 Query: 773 LAADNLNFEEAARIRDEIKRLKS 795 AA +L FEEA RIRDEI++L++ Sbjct: 666 AAAADLEFEEAGRIRDEIRKLEA 688 >gi|110678580|ref|YP_681587.1| excinuclease ABC subunit B [Roseobacter denitrificans OCh 114] gi|109454696|gb|ABG30901.1| excinuclease ABC, B subunit [Roseobacter denitrificans OCh 114] Length = 732 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/657 (63%), Positives = 525/657 (79%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD+ P+GDQP AI +L G+ S E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 32 FKLATDFEPAGDQPTAIKELAAGVLSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK G +Q+++++ LV QQY+R Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKTGRMYDQRQVMADLVAQQYRRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+K E I++Y Sbjct: 212 DQSFQRGSFRVRGDSLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGEKTNTFEQIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+ RL +L +G+LLEAQRLEQR +DLEMLE TG C Sbjct: 272 ANSHYVTPKPTMQQAIISIKKELRTRLDQLVGDGKLLEAQRLEQRTNFDLEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE++Q G+ EQIIRPTGL+DP +E Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMDQTGGVFTEQIIRPTGLIDPEIE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ TLE Sbjct: 452 IRPVEMQVDDLLDEVRKVAADGFRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTLE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQT GRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTTGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI+ET RRR KQ+ +N+KH I P +VK+ + +++ + D Sbjct: 572 NAEGRVIMYADRITGSMERAIEETNRRRAKQIAYNEKHGITPTTVKKNVEDILAGLYKGD 631 Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ ID Q ++ +A L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 632 TDQSRVTAKIDKQ---MAGGNLQAVLDGLRTDMRKAAENLEFEEAARLRDEVKRLEA 685 >gi|114570710|ref|YP_757390.1| excinuclease ABC subunit B [Maricaulis maris MCS10] gi|114341172|gb|ABI66452.1| excinuclease ABC, B subunit [Maricaulis maris MCS10] Length = 721 Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/692 (61%), Positives = 532/692 (76%), Gaps = 20/692 (2%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 WTPHR S+ FQ ++Y P GDQP AI +L+ G+ E+ Q+LLG TG+GKT Sbjct: 30 WTPHRP-DRPEKSEGGQRFQCVSEYSPKGDQPQAIEELVAGLKDEERDQVLLGATGTGKT 88 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMAK+IEA+QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSYYDYY PEAYVPRTD Sbjct: 89 FTMAKIIEAVQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYMPEAYVPRTD 148 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEKESSINE IDRMRH+ATRS+LER+D I+V+SVSCIYGIGSVE+Y+ M +LK GD Sbjct: 149 TYIEKESSINEAIDRMRHAATRSILERDDVIIVASVSCIYGIGSVETYTAMTFELKPGDI 208 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 V+ + + LV QY R D IRGTFR+ GD++E+FP+H +D AWR+ FG+++E+I+E Sbjct: 209 VDPRAITRQLVDLQYTRNDAAFIRGTFRIRGDNLEVFPAHYDDRAWRIGFFGDEVEQITE 268 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F PLTG+ + ++++K YANSHYVTPRPTLN A+ IK ELK RL +E G+LLEAQRL Sbjct: 269 FDPLTGKTMTELKSVKFYANSHYVTPRPTLNQAVVKIKAELKERLAWMEANGQLLEAQRL 328 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 +QR +DLEML TGSC IENYSRYLTGR PGEPPPTLFEYIPED+L+F DESHV+IPQ Sbjct: 329 QQRTEFDLEMLGATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPEDALVFADESHVSIPQ 388 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 + MY+GDF RK TL ++GFRLPSC+DNRPL+FEEW+ +RP TI VSATPG WEL Q G Sbjct: 389 LGAMYKGDFSRKKTLTDHGFRLPSCLDNRPLKFEEWDAMRPQTISVSATPGQWELNQTGG 448 Query: 543 IIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 + EQ+IRPTGL+DPPVEIR T QV+DV DE A++G R L+T LTKRMAEDL Sbjct: 449 VFTEQVIRPTGLIDPPVEIRPVSTDGASQVDDVIDEARATAEKGFRTLVTTLTKRMAEDL 508 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TEY++E+ ++VRYMHS+V T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECGLVAILD Sbjct: 509 TEYMHEQGLKVRYMHSDVDTVERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAILD 568 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSL+QTIGRAARN +SKVILYAD IT S+Q A+DET RRR KQ+ HN++H Sbjct: 569 ADKEGFLRSETSLVQTIGRAARNADSKVILYADRITGSMQRAMDETNRRRTKQIAHNEEH 628 Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG---------------KAH 763 I P ++ I ++++ ++ A ++ ++ K KG A Sbjct: 629 GITPTTITRGISDILEEVMESQAKGRGVAAKGRKKGDGKPKGLREADQAAFVAGDNVVAV 688 Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + L K+M AA +L FEEAAR+RDE+ +L+ Sbjct: 689 IADLEKRMREAAADLEFEEAARLRDEVLKLRG 720 >gi|83859420|ref|ZP_00952941.1| excinuclease ABC subunit B [Oceanicaulis alexandrii HTCC2633] gi|83852867|gb|EAP90720.1| excinuclease ABC subunit B [Oceanicaulis alexandrii HTCC2633] Length = 711 Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/686 (61%), Positives = 540/686 (78%), Gaps = 13/686 (1%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 WTPHR + S+ F+M +DY P+GDQP AIA+L++GI +E+ Q+LLGVTGSGKT Sbjct: 26 WTPHRP-DRPDKSEGGQKFRMVSDYEPAGDQPHAIAELVEGISQQERDQVLLGVTGSGKT 84 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMAKVIE +QRPA+++APNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVPRTD Sbjct: 85 FTMAKVIEKVQRPALILAPNKTLAAQLYGEFKDFFPHNAVEYFVSYYDYYQPEAYVPRTD 144 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEKES+INE IDRMRH+ATR++LER+D I+V+SVSCIYGIGSVE+Y+ M+ L++G Sbjct: 145 TYIEKESTINEAIDRMRHAATRAILERDDVIIVASVSCIYGIGSVETYTAMVFDLEVGAE 204 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 + +E++ LV QY R D RGTFR+ GD +EIFP+H + AWR+S FG++IE I E Sbjct: 205 KDPREVMRDLVSLQYTRNDAAFQRGTFRLRGDVLEIFPAHYDARAWRISFFGDEIERIQE 264 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F LTG I ++E +++YANSHYVTPRPTLN A+ IK+EL RL +E G+LLEAQRL Sbjct: 265 FEVLTGAPIGDLEKVRVYANSHYVTPRPTLNQAIVGIKKELAERLTWMEANGKLLEAQRL 324 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 +QR +DLEMLE TGSC IENYSRYLTGR PGEPPPT+FEY+P+++L+F+DESHVT+PQ Sbjct: 325 QQRTEFDLEMLEATGSCMGIENYSRYLTGRKPGEPPPTMFEYLPDNALVFIDESHVTVPQ 384 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 + MY+GDF+RK TLAE+GFRLPSCMDNRPL+FEEW +RP T+ VSATPG WEL Q G Sbjct: 385 LGAMYKGDFNRKRTLAEHGFRLPSCMDNRPLKFEEWEAMRPQTLHVSATPGKWELNQTGG 444 Query: 543 IIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 + EQ+IRPTGL+DPPVE+R +T QV+D+ +E A++G R L+T LTK+MAEDL Sbjct: 445 VFTEQVIRPTGLIDPPVEVRPVQTETSSQVDDIIEEARKTAEKGYRTLITTLTKKMAEDL 504 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TEY++E+ ++VRYMHS++ T+ERIE+IRDLRLG++DVLVGINLLREGLDIPECGLV ILD Sbjct: 505 TEYMHEQGLKVRYMHSDIDTVERIELIRDLRLGEYDVLVGINLLREGLDIPECGLVGILD 564 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSL+QTIGRAARN +++VILYAD IT S++ A++ET RRREKQ+ HN++H Sbjct: 565 ADKEGFLRSETSLVQTIGRAARNADARVILYADRITGSMERAMEETERRREKQIAHNQEH 624 Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQ 770 I P++V + +++ ++ E A D + Q KA + L K+ Sbjct: 625 GITPRTVTRGVSDILQGVMEETAKGRGSRRDKKRDRAVAEDQARFEPNNLKAAIADLEKR 684 Query: 771 MHLAADNLNFEEAARIRDEIKRLKSS 796 M AA +L FEEAAR+RDEIK+L+ + Sbjct: 685 MREAAADLEFEEAARLRDEIKKLEGA 710 >gi|89069290|ref|ZP_01156653.1| UvrABC system protein B [Oceanicola granulosus HTCC2516] gi|89045166|gb|EAR51234.1| UvrABC system protein B [Oceanicola granulosus HTCC2516] Length = 731 Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/655 (64%), Positives = 524/655 (80%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M TD+ +GDQP AI +L G+ S E+ Q+LLG TG+GKTFTMA++IE QRPAI++A Sbjct: 32 FVMHTDFEAAGDQPTAIGELTDGVLSGERDQVLLGATGTGKTFTMARIIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP NAVEYFVS+YDYYQPEAYVPR+DTYIEKES IN+QIDRMRH Sbjct: 92 PNKTLAAQLYGEFKSFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESMINDQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M L +G +Q+++++ L+ QQYKR Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLVVGREYDQRQVMADLITQQYKRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++ + I++Y Sbjct: 212 DQAFQRGTFRVRGDTLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGERTGTFDKIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTL A+ IK+EL+ RL +L EG+LLEAQRLEQR +D+EM+E TG C Sbjct: 272 ANSHYVTPKPTLQQAVIEIKKELRARLDQLVGEGKLLEAQRLEQRTNFDIEMIEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPADWELEQAGGVFTEQVIRPTGLLDPQVE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DEI QQG R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ TLE Sbjct: 452 IRPVETQVDDLLDEIRRVTQQGFRTLCTVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRREKQ+ +N+ H I P +VK+ + +V+ + D Sbjct: 572 NAEGRVIMYADRITGSMERAIGETERRREKQIAYNEAHGITPATVKKNVEDVLAGLYKGD 631 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A+ + + +A L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 632 TDMARVT--AKIDTPTGANLQAVLDGLRADMRKAAENLEFEEAARLRDEVKRLET 684 >gi|159044735|ref|YP_001533529.1| excinuclease ABC subunit B [Dinoroseobacter shibae DFL 12] gi|157912495|gb|ABV93928.1| UvrABC system protein B [Dinoroseobacter shibae DFL 12] Length = 725 Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/656 (64%), Positives = 525/656 (80%), Gaps = 1/656 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F+M T + P+GDQP AIA+L +G+ + E+ Q+LLG TG+GKTFTMAKVIE QRPAI++ Sbjct: 24 MFRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAIIL 83 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INEQIDRMR Sbjct: 84 APNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMR 143 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSATR+LLER+D I+V+SVSCIYGIGSVE+Y M L G S +Q+++++ LV QQY+R Sbjct: 144 HSATRALLERDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYRR 203 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D G RG+FRV GDS+EI+P+H+ED A + S FG ++E I+EF PLTG+K ++ I+I Sbjct: 204 NDAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGEKADTLDRIRI 263 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YANSHYVTPRPTL A+ IK+EL++RL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 264 YANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVC 323 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI GMY+GDF RK TLAE Sbjct: 324 NGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAE 383 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP V Sbjct: 384 HGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPQV 443 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR QV+D+ DE+ G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TL Sbjct: 444 EIRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTL 503 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAA Sbjct: 504 ERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAA 563 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN +VI+YAD IT S++ A+ ET RRR KQ+ +N++H I P++VK+ + +V+ + Sbjct: 564 RNAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVMAGLYQG 623 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D ++ ++ L + L+ LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 624 DVDMNRVTAKVEK-PLHGGNLETVLEGLRADMRKAAENLEFEEAARLRDEVKRLEA 678 >gi|326389080|ref|ZP_08210662.1| excinuclease ABC subunit B [Novosphingobium nitrogenifigens DSM 19370] gi|326206680|gb|EGD57515.1| excinuclease ABC subunit B [Novosphingobium nitrogenifigens DSM 19370] Length = 730 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/672 (64%), Positives = 527/672 (78%), Gaps = 5/672 (0%) Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184 PHR S+ F + +DY PSGDQP AIA L+ I ++ Q+LLGVTGSGKTFT Sbjct: 24 PHRP----EKSEGGKPFTVVSDYQPSGDQPTAIADLVASIEDDDRTQVLLGVTGSGKTFT 79 Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 MAKVIEA+QRPA+++APNKILAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTY Sbjct: 80 MAKVIEAVQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTY 139 Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304 IEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS M+ LK GD+V+ Sbjct: 140 IEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSAMVFDLKKGDTVD 199 Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 +E++ LV QYKR D RG+FRV GD++EIFPSH ED+AWRVS FG++IEEI+EF Sbjct: 200 SREIIRKLVALQYKRNDHAFARGSFRVRGDNLEIFPSHYEDMAWRVSFFGDEIEEIAEFD 259 Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424 PLTG+ ++ +++YANSH+VTP PTL AM I+ EL RL EL EG LLEAQRLEQ Sbjct: 260 PLTGKAGARLDRVRVYANSHHVTPGPTLKQAMDAIRFELSERLKELTSEGHLLEAQRLEQ 319 Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484 R +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE++LLF+DESH TIPQI Sbjct: 320 RTNFDLEMMAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFIDESHQTIPQIG 379 Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544 M RGD RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VSATPGSWE+EQ G+ Sbjct: 380 AMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVAVSATPGSWEMEQSGGVF 439 Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 EQ+IRPTGL+DPPV IR QV+D E A++G R L+T LTKRMAEDLTE+++E Sbjct: 440 AEQVIRPTGLIDPPVFIRPVEDQVQDCIAECRATAEKGYRTLVTTLTKRMAEDLTEFMHE 499 Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 +RVRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGF Sbjct: 500 AGLRVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGF 559 Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724 LRS+TSLIQTIGRAARNV+ +VILYAD +T S++ AI ET RRR +Q +N++H I P + Sbjct: 560 LRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRRARQQAYNEEHGITPAT 619 Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 +K +I ++I D + D + L +A+++ L K+M AA +L FEEA Sbjct: 620 IKRQIADIIADTASRDGVVVELE-DEETTHLVGHNLRAYIEDLEKRMRAAAADLEFEEAG 678 Query: 785 RIRDEIKRLKSS 796 R+RDEI+RL++S Sbjct: 679 RLRDEIRRLEAS 690 >gi|149201065|ref|ZP_01878040.1| excinuclease ABC subunit B [Roseovarius sp. TM1035] gi|149145398|gb|EDM33424.1| excinuclease ABC subunit B [Roseovarius sp. TM1035] Length = 767 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/655 (63%), Positives = 523/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AIA+L +G++ E+ Q+LLG TG+GKTFTMAK+IEA QRPAI++A Sbjct: 67 FLLASDFEPAGDQPTAIAELSQGLNEGERNQVLLGATGTGKTFTMAKIIEATQRPAIILA 126 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 127 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 186 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M L +G +Q+ +++ LV QQY+R Sbjct: 187 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLTVGAQYDQRAIMADLVAQQYRRN 246 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K + I+IY Sbjct: 247 DQAFQRGSFRVRGDSVEIFPAHLEDRAWRLSFFGEELEAITEFDPLTGEKTDTFDKIRIY 306 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK EL+MRL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 307 ANSHYVTPKPTMQQAIIGIKRELRMRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 366 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 367 GIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 426 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQ+IRPTGL+DP VE Sbjct: 427 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQVIRPTGLLDPQVE 486 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DE+ A G R+L+T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 487 IRPVETQVDDLLDEVRRVAADGYRVLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 546 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 547 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 606 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I P +V++ + +++ + D Sbjct: 607 NAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEAHGITPATVRKNVEDILAGLYKGD 666 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + L+ A L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 667 VDMARVTAQVDK-PLAGANLAAVLDGLRADMRKAAENLEFEEAARLRDEVKRLEA 720 >gi|85706423|ref|ZP_01037517.1| excinuclease ABC subunit B [Roseovarius sp. 217] gi|85669196|gb|EAQ24063.1| excinuclease ABC subunit B [Roseovarius sp. 217] Length = 741 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/655 (64%), Positives = 522/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T + P+GDQP AIA+L +GI E+ Q+LLG TG+GKTFTMAK+IEA QRPAI++A Sbjct: 41 FTLATTFEPAGDQPTAIAELSQGITEGERNQVLLGATGTGKTFTMAKIIEATQRPAIILA 100 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 101 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 160 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK+G+S +Q+ +++ LV QQYKR Sbjct: 161 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKLGESYDQRAIMADLVAQQYKRN 220 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K E I+IY Sbjct: 221 DHAFQRGSFRVRGDSVEIFPAHLEDRAWRLSFFGEELEAITEFDPLTGEKTDTFEKIRIY 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK EL+ RL +L +G+LLEAQRLEQR +DLEMLE TG C Sbjct: 281 ANSHYVTPKPTMQQAIIGIKRELRQRLDQLVNDGKLLEAQRLEQRTNFDLEMLEATGVCN 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 341 GIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WE+EQ G+ EQ+IRPTGL+DP VE Sbjct: 401 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGVFTEQVIRPTGLLDPQVE 460 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 461 IRPVDMQVDDLLDEVRRVAADGYRSLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 520 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 521 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 580 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I P ++K+ + +++ + D Sbjct: 581 NAEGRVIMYADRITGSMERALGETNRRRDKQIAYNQAHGITPATIKKNVDDILQGLYKGD 640 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + L+ +A L LR+ M AA+NL FEEAAR+RDE+KRL++ Sbjct: 641 VDMARVTAKVDK-PLAGANLQAVLDGLRRDMRKAAENLEFEEAARLRDEVKRLEA 694 >gi|163794442|ref|ZP_02188413.1| Helicase subunit of the DNA excision repair complex [alpha proteobacterium BAL199] gi|159180166|gb|EDP64689.1| Helicase subunit of the DNA excision repair complex [alpha proteobacterium BAL199] Length = 739 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/656 (64%), Positives = 534/656 (81%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P+GDQP AIA L+ G+ ++E Q+LLGVTGSGKTFT+A VI+ ++RP +++A Sbjct: 39 FQVVSDFEPAGDQPRAIADLIAGVQAQELDQVLLGVTGSGKTFTIAHVIQEVKRPTLILA 98 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVPRTDT++EKESS+NEQIDRMRH Sbjct: 99 PNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPRTDTFVEKESSVNEQIDRMRH 158 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIG+VE+Y MIV LK+GD++++ ++ LV+ QYKR Sbjct: 159 SATRALLERHDVIIVASVSCIYGIGAVETYGNMIVTLKVGDTIDRTNVMRRLVELQYKRN 218 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP+HLED AWR+S+FG+++E I EF PLTG+K +E I+++ Sbjct: 219 DASFHRGTFRVRGDSLEIFPAHLEDRAWRLSLFGDELEAIQEFDPLTGEKTAALEQIRVF 278 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PTL A + IK ELK RL EL + G+LLEAQRLEQR T+DLEM+E TGSC Sbjct: 279 ANSHYVTPKPTLQQANRLIKVELKERLEELNRAGKLLEAQRLEQRTTFDLEMMEATGSCA 338 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRNPGEPPPTLFEY+PED+LL VDESHVT+PQI GM++GD+ RK TL+EY Sbjct: 339 GIENYSRYLSGRNPGEPPPTLFEYLPEDALLVVDESHVTVPQIGGMFKGDYARKYTLSEY 398 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+FEEW +RP T+ VSATPG WELE+ G+ VEQ++RPTGL+DP E Sbjct: 399 GFRLPSCLDNRPLKFEEWEDMRPQTVFVSATPGPWELERTGGVFVEQLVRPTGLIDPVCE 458 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+DV E + AA +G R+L+TVLTK+MAE LTEY+ E I+VRY+HS+V TLE Sbjct: 459 IRPTKNQVDDVIAECHDAAAKGHRVLITVLTKKMAEALTEYMNEAGIKVRYIHSDVDTLE 518 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVL+GINLLREGLDIPEC LV ILDADKEG+LRSKTSL+QTIGRAAR Sbjct: 519 RIEIIRDLRLGIFDVLIGINLLREGLDIPECALVCILDADKEGYLRSKTSLVQTIGRAAR 578 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +V+LYAD IT S++ A+ ET RRR++Q+E+N H I P+SVK+ I +++ + E Sbjct: 579 NIDGRVLLYADRITASLEYALGETERRRQRQVEYNTAHGITPESVKKNIGDILSSV-YER 637 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ L K + ++ L +M AA +L FE+AAR+RDEIKRL+++ Sbjct: 638 GDHVTVDTGTEEGELVDKPIRQIIEELEARMKAAAADLEFEDAARLRDEIKRLEAA 693 >gi|148259176|ref|YP_001233303.1| excinuclease ABC subunit B [Acidiphilium cryptum JF-5] gi|326402329|ref|YP_004282410.1| UvrABC system protein B [Acidiphilium multivorum AIU301] gi|146400857|gb|ABQ29384.1| Excinuclease ABC subunit B [Acidiphilium cryptum JF-5] gi|325049190|dbj|BAJ79528.1| UvrABC system protein B [Acidiphilium multivorum AIU301] Length = 728 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/651 (64%), Positives = 529/651 (81%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 ++Y PSGDQP AIA L++G+ E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++APNK Sbjct: 30 SEYEPSGDQPGAIADLVRGVRQGERDQVLLGVTGSGKTFTMAKVIEQVQRPALILAPNKT 89 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK++ INE IDRMRH+AT+ Sbjct: 90 LAAQLYAEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDAQINEAIDRMRHAATQ 149 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER D I+V+SVSCIYGIGSVE+YSQM+V+L++G S+++ L +LV+ QY+R D Sbjct: 150 ALLERGDVIIVASVSCIYGIGSVETYSQMVVRLEVGGSIDRDRLAKALVELQYRRNDAAF 209 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFR+ G++++IFPS ED AWRV++FG++IE I+EF PLTG+K+ ++ I IYANSH Sbjct: 210 QRGTFRLRGETVDIFPSQYEDRAWRVTLFGDEIESIAEFDPLTGEKVTDLPAIAIYANSH 269 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPRPTL A+ IK EL+ RL E + G+LLEA+RL+QR T+D+EM+ETTGSC+ IEN Sbjct: 270 YVTPRPTLTQAIGKIKVELQQRLHEFTETGKLLEAERLQQRTTFDIEMMETTGSCKGIEN 329 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYL+GRNPG+PPPTLFEY+P+++LL VDESHVT+PQI GM++GDF RK+ L+E+GFRL Sbjct: 330 YSRYLSGRNPGDPPPTLFEYLPDNALLIVDESHVTVPQIGGMFKGDFARKSILSEFGFRL 389 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSC+DNRPL+FEEW RP T+ VSATPG WE+E+ G+ EQ+IRPTGLVDP +++R Sbjct: 390 PSCIDNRPLKFEEWESFRPQTVFVSATPGPWEMERTGGVFAEQVIRPTGLVDPVIDVRPV 449 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 QV+D+ E +Q G R+L+T LTKRMAEDLTEYL E +RVRY+HS+V TLERIEI Sbjct: 450 EHQVDDLLAECRATSQAGGRVLVTTLTKRMAEDLTEYLTENGVRVRYLHSDVDTLERIEI 509 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG +DVLVGINLLREGLDIPEC LVAILDADKEGFLRS TSL+QTIGRAARNV+ Sbjct: 510 IRDLRLGAYDVLVGINLLREGLDIPECMLVAILDADKEGFLRSATSLVQTIGRAARNVDG 569 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 +VILYADT+T+S++ AIDET RRR KQ N+ H I PQSVK++I E++ + +D T Sbjct: 570 RVILYADTMTRSLKYAIDETERRRAKQTAWNEAHGITPQSVKKQIGEIMHSVYEQDYVTV 629 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ K K+ + L K+M AA +L FEEAAR+RDEIKRL++ Sbjct: 630 APIRDSGATEFVGKDLKSTIAELEKRMRNAAADLEFEEAARLRDEIKRLEA 680 >gi|254452131|ref|ZP_05065568.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 238] gi|198266537|gb|EDY90807.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 238] Length = 739 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/657 (63%), Positives = 526/657 (80%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++TD+ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 37 FVLKTDFEPAGDQPTAIKELCEGIRNGERDQVLLGATGTGKTFTMAKMIEKTQRPAIILA 96 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP +VEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 97 PNKTLAAQLYGEFKGFFPDASVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 156 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M L G+ Q+++++ L+ Q YKR Sbjct: 157 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGEEYNQRQIMTDLIAQAYKRN 216 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG+K E ++IY Sbjct: 217 DAGFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDTFEKVRIY 276 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+ELKMRL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 277 ANSHYVTPKPTMKQAIVGIKKELKMRLDQLVNEGKLLEAQRLEQRCNFDLEMLEATGVCN 336 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK TLAE+ Sbjct: 337 GIENYSRYLTGRMPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 396 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 397 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPTGLLDPMIE 456 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV DEI + +G R L+T LTKRMAEDLTEYL+E I+VRYMHS++ T+E Sbjct: 457 IRPVDTQVDDVMDEIRRVSAKGFRTLVTTLTKRMAEDLTEYLHENGIKVRYMHSDIDTIE 516 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 517 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 576 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRR++Q+ +N+KH I P +VK+ + +++ + D Sbjct: 577 NAEGRVIMYADRITGSMERAIGETDRRRDRQIAYNEKHGITPTTVKKNVDDILAGLYKGD 636 Query: 741 AATTNI--SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +IDA L+ K L+ LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 637 VDMNRVTATIDA---PLAGANLKTVLQGLRTDMRKAAENLEFEEAARLRDEVKRLET 690 >gi|114770189|ref|ZP_01447727.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255] gi|114549026|gb|EAU51909.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255] Length = 727 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/655 (63%), Positives = 526/655 (80%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ + P+GDQP AI +L++G+ E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 25 FVLKSPFEPAGDQPVAINELVQGLADGEQNQVLLGATGTGKTFTMAKIIEQTQRPAIILA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL+ EFKNFFP N+V+YFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 85 PNKTLAAQLFGEFKNFFPDNSVQYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER+D I+V+SVSCIYGIGSVE+Y M L G+ Q+++++ LV QQYKR Sbjct: 145 AATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLISGNEYNQRQVMADLVAQQYKRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RG+FRV GD++EI+P+HL+D WR+S FG+++E I EF LTG+K +E++++Y Sbjct: 205 DTGFSRGSFRVRGDTLEIWPAHLDDRGWRLSFFGDELEAIQEFDTLTGEKSALLESVRVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ AMK IK EL RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 265 ANSHYVTPRPTMQQAMKGIKAELVTRLKQLNDEGKLLEAQRLEQRTNFDLEMLEATGVCN 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV +PQI GMYRGD+ RK TL+E+ Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVAVPQIGGMYRGDYRRKITLSEH 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC DNRPL+FEEW+ +RP ++ VSATP WELEQ GI EQIIRPTGL+DPP+E Sbjct: 385 GFRLPSCTDNRPLKFEEWDAMRPQSVFVSATPQKWELEQSGGIFAEQIIRPTGLLDPPIE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI + +QG R+L+T LTKRM+EDLTEYL+E+ IRVRYMHS++ TLE Sbjct: 445 IRPVDTQVDDLLSEIRIVIEQGNRVLVTTLTKRMSEDLTEYLHEQGIRVRYMHSDIDTLE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+Y D +T S++ AI ET RRRE+Q+++N K+NI P+++K+ + +++ D Sbjct: 565 NSEGRVIMYGDKVTGSMERAISETNRRRERQIKYNIKNNITPETIKKNVEDIMGGTFEGD 624 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + I+ + L +AHL SLRK M AA+NL FE+AARIRDE+KRL++ Sbjct: 625 TDESRITAKIDKKPLVGANLQAHLDSLRKDMIKAAENLEFEDAARIRDEVKRLEA 679 >gi|163735212|ref|ZP_02142647.1| excinuclease ABC subunit B [Roseobacter litoralis Och 149] gi|161391426|gb|EDQ15760.1| excinuclease ABC subunit B [Roseobacter litoralis Och 149] Length = 732 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/657 (63%), Positives = 524/657 (79%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T++ P+GDQP AI +L G+ + ++ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 32 FKLATEFEPAGDQPTAIKELAAGVRNGDRDQVLLGATGTGKTFTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK G +Q+++++ LV QQY+R Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKTGQMYDQRQVMADLVAQQYRRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+K E I++Y Sbjct: 212 DQSFQRGSFRVRGDSLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGEKTDTFEQIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+ RL +L +G+LLEAQRLEQR +DLEMLE TG C Sbjct: 272 ANSHYVTPKPTMNQAIIGIKKELRTRLDQLVGDGKLLEAQRLEQRTNFDLEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQTGGVFTEQIIRPTGLIDPEIE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ TLE Sbjct: 452 IRPVEMQVDDLLDEVRKVAADGFRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTLE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQT GRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTTGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRR KQ+ +N+KH I P +VK+ + +++ + D Sbjct: 572 NAEGRVIMYADRITGSMERAIGETDRRRAKQVAYNEKHGITPTTVKKNVEDILAGLYKGD 631 Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ ID Q ++ + L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 632 TDQSRVTAKIDKQ---MAGGNLQTVLDGLRTDMRKAAENLEFEEAARLRDEVKRLEA 685 >gi|126730954|ref|ZP_01746763.1| excinuclease ABC subunit B [Sagittula stellata E-37] gi|126708670|gb|EBA07727.1| excinuclease ABC subunit B [Sagittula stellata E-37] Length = 731 Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/660 (64%), Positives = 525/660 (79%), Gaps = 11/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T + P+GDQP AI +L GI+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 31 FVMHTTFSPAGDQPTAITELTGGINEGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 90 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 91 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 150 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M L +G +Q+++++ L+ QQY+R Sbjct: 151 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLFVGKEYDQRKVMADLIAQQYRRN 210 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RGTFRV GD +E++P+HLED AWR+S FG ++E + EF PLTG K E I+IY Sbjct: 211 DQGFSRGTFRVRGDVLEVWPAHLEDRAWRLSFFGEELEGLMEFDPLTGTKTDTFERIRIY 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ A++ IK+EL+ RL +L E +LLEAQRLEQR +DLEMLE TG C Sbjct: 271 ANSHYVTPRPTMQQAIQGIKKELRQRLDQLVGEAKLLEAQRLEQRTNFDLEMLEATGVCN 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 331 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELEQ G+ EQ+IRPTGL+DP VE Sbjct: 391 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWELEQSGGVFTEQVIRPTGLLDPQVE 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI A G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E Sbjct: 451 IRPVEMQVDDLLDEIRKVAASGYRTLATVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 511 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD +T S++ AI ET RRREKQ+ +N++H I P++VK+ + +++ + D Sbjct: 571 NADGRVIMYADRMTGSMERAIGETNRRREKQIAYNEEHGITPETVKKNVDDILAGLYQGD 630 Query: 741 AATTNIS--IDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ ID K +G +A L+ LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 631 TDQSRVTAKID------PKHQGSNIQAVLEGLRNDMRKAAENLEFEEAARLRDEVKRLEA 684 >gi|163744636|ref|ZP_02151996.1| excinuclease ABC subunit B [Oceanibulbus indolifex HEL-45] gi|161381454|gb|EDQ05863.1| excinuclease ABC subunit B [Oceanibulbus indolifex HEL-45] Length = 734 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/681 (62%), Positives = 533/681 (78%), Gaps = 6/681 (0%) Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174 PLL N R HS F++ T++ P+GDQP AI +L +G++S E+ Q+LL Sbjct: 13 PLLANPAPDVRTRPKLEGGHS-----FKLVTEFAPAGDQPTAIKELTEGVNSGERDQVLL 67 Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G TG+GKTFTMAKVIE QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQP Sbjct: 68 GATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQP 127 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294 EAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y M Sbjct: 128 EAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMT 187 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 LK G+S +Q+++++ LV QQYKR D RG+FRV GDS+EIFP+HL+D AWR+S FG Sbjct: 188 QDLKAGESYDQRKVIADLVAQQYKRNDAAFQRGSFRVRGDSLEIFPAHLDDRAWRLSFFG 247 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 ++E I+EF PLTG+K + I++YANSHYVTP+PT++ A+ IK+EL+ RL +L +G Sbjct: 248 EELESITEFDPLTGEKTDTFDQIRVYANSHYVTPKPTMSQAIIGIKKELRTRLDQLVADG 307 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 +LLEAQRLEQR +D+EMLE TG C IENYSRYLTGR PGEPPPTLFE+IP+++++F D Sbjct: 308 KLLEAQRLEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFAD 367 Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 ESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP + Sbjct: 368 ESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAA 427 Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594 WE+EQ G+ EQIIRPTGL+DP +EIR QV+D+ DE+ A G R L TVLTKRM Sbjct: 428 WEIEQTGGVFTEQIIRPTGLIDPYIEIRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRM 487 Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLV Sbjct: 488 AEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLV 547 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 AILDADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR KQ+ + Sbjct: 548 AILDADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAMGETDRRRAKQMAY 607 Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774 N++H I P +VK+ + +++ + D ++ L+ + L LR M A Sbjct: 608 NEEHGITPATVKKNVDDILAGLYKGDVDMNRVTAKVDN-PLAGGNLQTVLDGLRTDMRKA 666 Query: 775 ADNLNFEEAARIRDEIKRLKS 795 A+NL FEEAAR+RDE+KRL++ Sbjct: 667 AENLEFEEAARLRDEVKRLEA 687 >gi|83950333|ref|ZP_00959066.1| excinuclease ABC subunit B [Roseovarius nubinhibens ISM] gi|83838232|gb|EAP77528.1| excinuclease ABC subunit B [Roseovarius nubinhibens ISM] Length = 732 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/655 (63%), Positives = 528/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M T++ +GDQP AIA+L +G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 32 FEMVTEFSAAGDQPTAIAELTQGVTEGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVPR+DT+IEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVPRSDTFIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M LK+G +Q+++++ LV QQY+R Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGSDYDQRKVIADLVAQQYRRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RG+FRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG+K + I++Y Sbjct: 212 DHGFQRGSFRVRGDSLEIWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDTFDQIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+ RL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 272 ANSHYVTPKPTMQQAIIGIKKELRQRLDQLVGEGKLLEAQRLEQRCNFDLEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQ+IRPTGL+DP +E Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQTGGVFTEQVIRPTGLLDPQIE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DE+ + G R L T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 452 IRPVETQVDDLLDEVRRVSAAGYRTLCTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRR KQ+ +N++H I P +VK+ + +++ + D Sbjct: 572 NADGRVIMYADRITGSMERAMGETERRRAKQIAYNEEHGITPATVKKNVEDILAGLYKGD 631 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + SL + L+ LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 632 TDQSRVTATIDK-SLHGGNLETVLEGLRADMRKAAENLEFEEAARLRDEVKRLEA 685 >gi|149186162|ref|ZP_01864476.1| excinuclease ABC subunit B [Erythrobacter sp. SD-21] gi|148830193|gb|EDL48630.1| excinuclease ABC subunit B [Erythrobacter sp. SD-21] Length = 731 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/655 (64%), Positives = 524/655 (80%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AIA+L E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++A Sbjct: 36 FKLVSDYTPSGDQPTAIAELTASAREDEQTQVLLGVTGSGKTFTMAKVIEELQRPALILA 95 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILAAQL+ EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH Sbjct: 96 PNKILAAQLFGEFKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 155 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI + +V+Q+EL+ LV QYKR Sbjct: 156 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDIVKDSTVDQRELIRKLVALQYKRN 215 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RG FRV GDS+EIFPSH ED+AWR+S FG++IEEISEF PLTG+K +++ +++Y Sbjct: 216 DAGFSRGNFRVRGDSLEIFPSHYEDMAWRISFFGDEIEEISEFDPLTGKKGASLDKVRVY 275 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP PT+ A + IK EL RL EL ++GRLLEAQRLEQR +DLEM+ TGSC Sbjct: 276 ANSHYVTPGPTMKQASEAIKFELTERLKELHEDGRLLEAQRLEQRTNFDLEMIAATGSCA 335 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH T+PQI M +GD RK TLAEY Sbjct: 336 GIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQTVPQIGAMAKGDHRRKITLAEY 395 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF EW+ +RP T VSATPG+WE+EQ G+ EQ+IRPTGL+DPPVE Sbjct: 396 GFRLPSCIDNRPLRFNEWDAMRPQTFCVSATPGTWEMEQTGGVFAEQVIRPTGLIDPPVE 455 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ QV+D +E A+ G R L+T LTKRMAEDLTE+++E ++VRYMHS+V+TLE Sbjct: 456 IKPVEDQVQDCIEECKKTAKMGYRTLVTTLTKRMAEDLTEFMHEAGVKVRYMHSDVETLE 515 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 516 RIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLVQTIGRAAR 575 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYAD IT S++ A+ ET RRREKQ +N++H I P+++K I +++ +D Sbjct: 576 NVEGRVILYADRITGSMERAMAETDRRREKQKAYNEEHGITPKTIKRNIADIVAHTAAQD 635 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T D ++ +L +A+++ L K+M AA +L FEEA R+RDEI+ L++ Sbjct: 636 GVTVETG-DDERNNLVGHNLRAYIEDLEKRMRKAAADLEFEEAGRLRDEIRHLEN 689 >gi|114765085|ref|ZP_01444230.1| excinuclease ABC subunit B [Pelagibaca bermudensis HTCC2601] gi|114542489|gb|EAU45515.1| excinuclease ABC subunit B [Roseovarius sp. HTCC2601] Length = 732 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/659 (64%), Positives = 526/659 (79%), Gaps = 9/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T+++ +GDQP AIA+L GI E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 32 FVMHTEFNAAGDQPTAIAELSSGIDEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPDNSVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+V+SVSCIYGIGSVE+Y M L G E +++++ LV QQY+R Sbjct: 152 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGSEYEMRKVMADLVTQQYRRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EI+P+HLED AWR+S FG ++E I+EF PLTGQK + E I++Y Sbjct: 212 DQAFQRGSFRVRGDSLEIWPAHLEDRAWRLSFFGEELEAITEFDPLTGQKTGSFERIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+ RL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 272 ANSHYVTPKPTMNQAVIQIKKELRQRLDQLVSEGKLLEAQRLEQRTNFDIEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELE+ G+ EQ+IRPTGL+DP VE Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWELEESGGVFTEQVIRPTGLLDPQVE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI Q G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E Sbjct: 452 IRPVEMQVDDLLDEIRKVTQDGYRTLCTVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR+KQ+ +N++H I P++VK+ + +++ + D Sbjct: 572 NAEGRVIMYADRITGSMERALAETDRRRQKQIAYNEEHGITPETVKKNVDDILAGLYQGD 631 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----LRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ ++ K+ A+L++ LR M AA+NL FEEAAR+RDEIKRL++ Sbjct: 632 VDMNRVTA-----TVDPKRQGANLETVLNGLRTDMRKAAENLEFEEAARLRDEIKRLEA 685 >gi|254488276|ref|ZP_05101481.1| excinuclease ABC, B subunit [Roseobacter sp. GAI101] gi|214045145|gb|EEB85783.1| excinuclease ABC, B subunit [Roseobacter sp. GAI101] Length = 738 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/655 (63%), Positives = 521/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T++ P+GDQP AI +L +G+ S E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 36 FVLSTEFDPAGDQPTAIKELSEGVLSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 95 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 96 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 155 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+Y M LK G S +Q+++++ L+ Q YKR Sbjct: 156 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKTGTSYDQRQVIADLIAQAYKRN 215 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K + I++Y Sbjct: 216 DAAFQRGTFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGEKTGTFDQIRVY 275 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+MRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 276 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVGEGKLLEAQRLEQRCNFDIEMLEATGVCN 335 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 336 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 395 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 396 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQTGGVFTEQIIRPTGLIDPMIE 455 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+E Sbjct: 456 IRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 515 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 516 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 575 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR KQ+ +N+ H I P +VK+ + +++ + D Sbjct: 576 NAEGRVIMYADRITGSMERAMGETDRRRAKQVAYNELHGITPTTVKKNVDDILAGLYKGD 635 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ L+ K L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 636 VDMNRVTAKIDN-PLAGGNLKTVLDGLRTDMRKAAENLEFEEAARLRDEVKRLEA 689 >gi|260427850|ref|ZP_05781829.1| excinuclease ABC, B subunit [Citreicella sp. SE45] gi|260422342|gb|EEX15593.1| excinuclease ABC, B subunit [Citreicella sp. SE45] Length = 732 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/657 (64%), Positives = 523/657 (79%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M T++ +GDQP AIA+L G+ E+ Q+LLG TG+GKTFTMAKVIE QRPAI++A Sbjct: 32 FVMHTEFTAAGDQPTAIAELSSGVRDGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 92 PNKTLAAQLYGEFKGFFPDNSVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+V+SVSCIYGIGSVE+Y M L +G E +++++ LV QQY+R Sbjct: 152 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHVGSEYEMRKIMADLVAQQYRRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EI+P+HLED AW++S FG ++E I+EF PLTG+K + E I++Y Sbjct: 212 DQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEAITEFDPLTGEKTGSFERIRVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+ RL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 272 ANSHYVTPKPTMNQAVVQIKKELRQRLDQLVNEGKLLEAQRLEQRTNFDIEMLEATGVCN 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+ Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELE+ G+ EQ+IRPTGL+DP VE Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAWELEEAGGVFTEQVIRPTGLLDPMVE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI + G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E Sbjct: 452 IRPVEMQVDDLLDEIRKVTKDGFRTLCTVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRREKQ+ +N++H I P +VK+ + +++ + D Sbjct: 572 NAEGRVIMYADRITGSMERAMAETDRRREKQVAYNEEHGITPATVKKNVDDILAGLYQGD 631 Query: 741 AATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + S+ G +A L LR M AA+NL FEEAAR+RDEIKRL++ Sbjct: 632 VDMNRVT---ATIDSSRAGGNLEAVLDGLRTDMRKAAENLEFEEAARLRDEIKRLEA 685 >gi|84516968|ref|ZP_01004325.1| UvrABC system protein B [Loktanella vestfoldensis SKA53] gi|84509086|gb|EAQ05546.1| UvrABC system protein B [Loktanella vestfoldensis SKA53] Length = 748 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/661 (62%), Positives = 526/661 (79%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++T++ P+GDQP AIA+L GI + E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 48 FVLKTEFEPAGDQPTAIAELSAGILAGERDQVLLGATGTGKTFTMAKMIEQTQRPAIILA 107 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 108 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 167 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M + G S +Q+++++ L+ QQY+R Sbjct: 168 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIHAGQSYDQRQIIADLIAQQYRRN 227 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG K + ++IY Sbjct: 228 DQAFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELESITEFDPLTGTKTGTFDKVRIY 287 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+MRL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 288 ANSHYVTPKPTMQQAVIGIKKELRMRLDQLVAEGKLLEAQRLEQRTNFDLEMLEATGVCN 347 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK TLAE+ Sbjct: 348 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 407 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 408 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPTGLIDPMIE 467 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DE+ A G R L+T LTKRM+EDLTEY++E+ IRVRYMHS++ T+E Sbjct: 468 IRPVETQVDDLLDEVRKVAAAGYRTLVTTLTKRMSEDLTEYMHEQGIRVRYMHSDIDTIE 527 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 528 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 587 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR KQL +N+KH I P +VK+ + +++ + D Sbjct: 588 NAEGRVIMYADRITGSMERAMGETERRRTKQLAYNEKHGITPTTVKKNVEDILAGLYKGD 647 Query: 741 AATTNISIDAQQLSLSKKKGKAH------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D +++ KG+A + +R M AA+NL FEEAAR+RDE+KRL+ Sbjct: 648 -------VDMNRVTAKIDKGRAGGNIKTVIDGIRTDMRKAAENLEFEEAARLRDELKRLE 700 Query: 795 S 795 + Sbjct: 701 A 701 >gi|87200793|ref|YP_498050.1| excinuclease ABC subunit B [Novosphingobium aromaticivorans DSM 12444] gi|87136474|gb|ABD27216.1| Excinuclease ABC subunit B [Novosphingobium aromaticivorans DSM 12444] Length = 747 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/656 (64%), Positives = 521/656 (79%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIA L++GI + +K Q+LLGVTGSGKTFTMA+VIEA QRPA+++A Sbjct: 54 FRIVSDYQPAGDQPTAIADLVEGIRADDKTQVLLGVTGSGKTFTMAQVIEATQRPALILA 113 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH Sbjct: 114 PNKILAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 173 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI LK+G +V+ E++ LV QYKR Sbjct: 174 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDLKVGTTVDSGEIIRKLVALQYKRN 233 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD++EIFPSH EDVAWR+S FG++IE+I EF PLTG+ + I++Y Sbjct: 234 DAAFSRGNFRVRGDNLEIFPSHYEDVAWRISFFGDEIEQIVEFDPLTGKAGTKLTAIRVY 293 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP PT+ A I+ EL RL EL EG+LLEAQRLEQR +DLEM+ TGSC Sbjct: 294 ANSHYVTPGPTMKQAADAIRFELTERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCA 353 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPPPTLFEY+P+++LLFVDESH T+PQI M RGD RK TLAEY Sbjct: 354 GIENYSRFLTGRLPGEPPPTLFEYLPDNALLFVDESHQTVPQIGAMARGDHRRKLTLAEY 413 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF EW+ +RP T+ VSATPG WE+EQ G+ EQ+IRPTGL+DPPV Sbjct: 414 GFRLPSCIDNRPLRFNEWDAMRPQTVAVSATPGGWEMEQAGGVFAEQVIRPTGLIDPPVL 473 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D +E A +G R L+T LTKRMAEDLTE+++E +RVRYMHS+V+TLE Sbjct: 474 IRPVEDQVQDCINECRETAAKGYRTLVTTLTKRMAEDLTEFMHEAGLRVRYMHSDVETLE 533 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 534 RIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLIQTIGRAAR 593 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VILYAD +T S++ AI ET RRR KQ +N++H I PQ++K I +++ D Sbjct: 594 NVDGRVILYADRMTGSMERAIAETDRRRAKQQAYNEEHGITPQTIKRNIHDIVADTASRD 653 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + D ++ +L +A+++ L K+M AA +L FEEA R+RDEI+RL+++ Sbjct: 654 GVVVDTG-DDERNNLVGHNLRAYIEDLEKRMRAAAADLEFEEAGRLRDEIRRLEAT 708 >gi|310815602|ref|YP_003963566.1| excinuclease ABC subunit B [Ketogulonicigenium vulgare Y25] gi|308754337|gb|ADO42266.1| excinuclease ABC subunit B [Ketogulonicigenium vulgare Y25] Length = 727 Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/677 (63%), Positives = 525/677 (77%), Gaps = 16/677 (2%) Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 TP R + + F + T + P+GDQP+AIA+L+ GI S E Q+LLG TG+GKTF Sbjct: 15 TPQRREKLEGGKR----FVLNTSFDPAGDQPSAIAELVAGIDSGEHDQVLLGATGTGKTF 70 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 TMA+VIE QRPAI++A NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYV RTDT Sbjct: 71 TMAQVIERTQRPAIILAHNKTLAAQLYGEFKNFFPENAVEYFVSYYDYYQPEAYVARTDT 130 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 +IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M L +G + Sbjct: 131 FIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLFVGQNY 190 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 + +++++ LV QQYKR D RG+FRV GD +E++P+HLED AWR+S FG ++E I EF Sbjct: 191 DMRQVINDLVAQQYKRNDQAFSRGSFRVRGDLLEVWPAHLEDRAWRMSFFGEELESIIEF 250 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PLTGQK N I+IYANSHYVTPRPT+N A+ IK EL+ RL + EG+LLEAQRLE Sbjct: 251 DPLTGQKTDNFTQIRIYANSHYVTPRPTMNQAVIGIKNELRQRLDQFTDEGKLLEAQRLE 310 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 QR +DLEMLE TG C IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI Sbjct: 311 QRTRFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQI 370 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 MYRGDF RK TLA++GFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG WE+ Q G+ Sbjct: 371 GAMYRGDFRRKTTLADHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGPWEMGQTGGV 430 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 EQIIRPTGL+DP V+IR QV+D+ EI + G+R L TVLTKRMAEDLTEYL+ Sbjct: 431 FAEQIIRPTGLLDPLVDIRPVEMQVDDLLSEIRKVSAAGMRTLATVLTKRMAEDLTEYLH 490 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEG Sbjct: 491 EQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEG 550 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLRS+TSL+QTIGRAARN +VI+YAD IT S+Q A+ ET RRR++Q+ +N +H I PQ Sbjct: 551 FLRSETSLVQTIGRAARNAEGRVIMYADRITGSMQRALAETDRRRQRQMAYNVEHGITPQ 610 Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK-----AHLKSLRKQMHLAADNL 778 SVK+ + +++ T D +++ K GK A L+ LR M AA+NL Sbjct: 611 SVKKNVEDIL-------FGTYQGDTDMSRVTAKIKPGKGGNLEAVLEGLRADMRKAAENL 663 Query: 779 NFEEAARIRDEIKRLKS 795 FEEAAR+RDE+KRL++ Sbjct: 664 EFEEAARLRDEVKRLET 680 >gi|254437198|ref|ZP_05050692.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 307] gi|198252644|gb|EDY76958.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 307] Length = 735 Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/655 (63%), Positives = 524/655 (80%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++T++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 34 FVLKTEFEPAGDQPTAIKELCEGIRNGERDQVLLGATGTGKTFTMAKMIEETQRPAIILA 93 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP AVEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 94 PNKTLAAQLYGEFKSFFPEAAVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 153 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+V+SVSCIYGIGSVE+Y M L G+ Q+++++ L+ Q YKR Sbjct: 154 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHTGEEYNQRQIMADLIAQAYKRN 213 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG+K E ++IY Sbjct: 214 DAGFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDTFEKVRIY 273 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+MRL + EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 274 ANSHYVTPKPTMKQAVVGIKKELRMRLDQFVSEGKLLEAQRLEQRCNFDLEMLEATGVCN 333 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK TLAE+ Sbjct: 334 GIENYSRYLTGRMPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 393 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ G+ EQIIRPTGL+DP +E Sbjct: 394 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPTGLIDPMIE 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV DEI + +G R L+T LTKRMAEDLTEYL+E I+VRYMHS++ T+E Sbjct: 454 IRPVETQVDDVMDEIRRVSAKGFRTLVTTLTKRMAEDLTEYLHENGIKVRYMHSDIDTIE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 514 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR++Q+ +N+KH I P +VK+ + +++ + D Sbjct: 574 NAEGRVIMYADRITGSMERAMGETDRRRDRQIAYNEKHGITPTTVKKNVEDILAGLYKGD 633 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A + + KA L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 634 VDMNRVT--ATIDTPAGPNLKAVLDGLRVDMRKAAENLEFEEAARLRDEVKRLET 686 >gi|296282346|ref|ZP_06860344.1| excinuclease ABC subunit B [Citromicrobium bathyomarinum JL354] Length = 727 Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/655 (64%), Positives = 519/655 (79%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L++ EK Q+LLGVTGSGKTFTMAKVIE +QRPA+++A Sbjct: 39 FELVSEYEPAGDQPTAIEELVREAEGGEKTQVLLGVTGSGKTFTMAKVIEELQRPALILA 98 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH Sbjct: 99 PNKILAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 158 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI +K G+SV+Q+EL+ LV QYKR Sbjct: 159 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDIKQGESVDQRELIRKLVALQYKRN 218 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD++E+FPSHLED AWR+S FG+DIEEI EF PLTG+ ++ +++Y Sbjct: 219 DVAFARGNFRVRGDNLELFPSHLEDTAWRISFFGDDIEEIVEFDPLTGKPGTKLDKVRVY 278 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP PT+ A + IK EL RL ELE EG+LLE QRLEQR +DLEM+ TGSC Sbjct: 279 ANSHYVTPGPTMKQAAEAIKFELAERLKELEAEGKLLEHQRLEQRTNFDLEMIAATGSCN 338 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH T+PQI M RGD RK TLAEY Sbjct: 339 GIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQTVPQIGAMARGDHRRKITLAEY 398 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF EW+ +RP T VSATPG WELEQ G+ EQ+IRPTGL+DPPVE Sbjct: 399 GFRLPSCIDNRPLRFNEWDAMRPQTFAVSATPGGWELEQTGGVFAEQVIRPTGLIDPPVE 458 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D +E A +G R L+T LTKRMAEDLTE+++E ++VRYMHS+V+TLE Sbjct: 459 IRPVEDQVQDCIEECKATAAKGYRTLVTTLTKRMAEDLTEFMHEAGVKVRYMHSDVETLE 518 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 519 RIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLIQTIGRAAR 578 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VILYAD IT S++ A+ ET RRREKQ +N++H I P +++ I + I Sbjct: 579 NVDGRVILYADRITGSMERAMAETERRREKQRAYNEEHGITPTTIRRAIAD----ITAHA 634 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + L +A+++ L K+M AA NL FEEA R+RDEI+ L++ Sbjct: 635 TKGEDGEPEDEATPLVGHNLRAYIEDLEKKMREAAANLEFEEAGRLRDEIRALEA 689 >gi|329890749|ref|ZP_08269092.1| excinuclease ABC, B subunit [Brevundimonas diminuta ATCC 11568] gi|328846050|gb|EGF95614.1| excinuclease ABC, B subunit [Brevundimonas diminuta ATCC 11568] Length = 771 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/678 (63%), Positives = 531/678 (78%), Gaps = 8/678 (1%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 W PHR N + F+++T Y P+GDQP+AIA+L+ ++ Q+LLGVTGSGKT Sbjct: 54 WVPHRPDRPTNKKR--VPFRLETKYQPAGDQPSAIAELVAQAAEGDREQVLLGVTGSGKT 111 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMAKVIE QRPA+++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTD Sbjct: 112 FTMAKVIEQTQRPALILAHNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYVPRTD 171 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEK+SSINEQIDRMRH+ATR++LER+D IVV+SVSCIYGIGSVE+Y+ M LK+GD Sbjct: 172 TYIEKDSSINEQIDRMRHAATRAILERDDVIVVASVSCIYGIGSVETYTAMTFNLKVGDQ 231 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 +++ +L + L+ QYKR D+ RG FR GD++EIFP HLED AWR+S+FG++IE I E Sbjct: 232 IDEAKLRADLIALQYKRNDLHFERGMFRKRGDTLEIFPVHLEDRAWRISLFGDEIEAIDE 291 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F PLTG+K ++ + +YA SHYVTPRPTLN A+ IK ELK L + + G+LLEAQRL Sbjct: 292 FDPLTGKKTNALDEVTVYAASHYVTPRPTLNQAVNGIKAELKETLDWMVENGKLLEAQRL 351 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 EQR +DLEM+E TGSC IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESHVT+ Q Sbjct: 352 EQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHVTVGQ 411 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 I M+RGD+ RK+TLAEYGFRLPS +DNRPL+FEEW+ +RP T+ VSATPG+WEL++ G Sbjct: 412 IGAMFRGDYRRKSTLAEYGFRLPSAIDNRPLKFEEWDAMRPQTVFVSATPGAWELDKTGG 471 Query: 543 IIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 + EQ+IRPTGL+DPPVEIR + R QV+DV DE+ A+ G R L+T LTK+MAEDL Sbjct: 472 VFTEQVIRPTGLIDPPVEIRPVSGATRNQVDDVIDEVKATARAGYRSLVTTLTKKMAEDL 531 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TEY++E+ +RVRYMHS+V TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILD Sbjct: 532 TEYMHEQGVRVRYMHSDVDTLERIEILRDLRLGSFDVLIGINLLREGLDIPECGLVAILD 591 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718 ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ AI ET RRREKQ +N +H Sbjct: 592 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRREKQQAYNLEH 651 Query: 719 NINPQSVKEKIMEVID-PILLEDAA-TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 I P++VK I E+++ P D T + + +A LK L +M AA Sbjct: 652 GITPETVKRDIKEILESPYESRDLDRLTRPGVAEEAKPFVGSNFQAALKDLEGRMRDAAA 711 Query: 777 NLNFEEAARIRDEIKRLK 794 NL FEEAAR+RDEIK++K Sbjct: 712 NLEFEEAARLRDEIKKMK 729 >gi|148557570|ref|YP_001265152.1| excinuclease ABC subunit B [Sphingomonas wittichii RW1] gi|148502760|gb|ABQ71014.1| Excinuclease ABC subunit B [Sphingomonas wittichii RW1] Length = 815 Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/675 (63%), Positives = 537/675 (79%), Gaps = 2/675 (0%) Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179 G+ + PHR ++ F++ +DY PSGDQP AIA+L + E+ Q+LLGVTGS Sbjct: 103 GQSFVPHRPERPEK-TEGGKPFKLVSDYEPSGDQPTAIAELAAQAAAGERDQVLLGVTGS 161 Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 GKTFTMAKV+E +QRPA+V+APNKILAAQLY EFK FFP NAVE+FVSYYDYYQPEAYVP Sbjct: 162 GKTFTMAKVVEQLQRPALVLAPNKILAAQLYGEFKQFFPENAVEFFVSYYDYYQPEAYVP 221 Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299 R+DTYIEKESS+NE IDRMRHSATRSLLER+D ++V+SVSC+YGIGSVE+YS MI LK Sbjct: 222 RSDTYIEKESSVNEAIDRMRHSATRSLLERDDVLIVASVSCLYGIGSVETYSAMIFDLKK 281 Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359 G +V+Q+E++ LV QYKR D RG FRV GD++EIFPSH ED AWR++ FG++IEE Sbjct: 282 GQTVDQREIIRKLVALQYKRNDAAFSRGNFRVRGDNLEIFPSHYEDSAWRIAFFGDEIEE 341 Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419 I EF PLTG+K +++ ++++ANSHYVTP PT+ AM+ I+ EL RL EL EGRLLEA Sbjct: 342 IVEFDPLTGKKAASLDHVRVFANSHYVTPGPTMKQAMEAIRFELTERLKELHAEGRLLEA 401 Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479 QRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH T Sbjct: 402 QRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQT 461 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 I QI+GM RGD RK TLAEYGFRLPSC+DNRPLRF EW +RP T+ VSATPG WE+EQ Sbjct: 462 IGQINGMSRGDHRRKITLAEYGFRLPSCIDNRPLRFSEWEVMRPQTVYVSATPGGWEMEQ 521 Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599 G+ EQ+IRPTGL+DPPV+IR +QV+D+ E A+QG R L+T LTKRMAEDLT Sbjct: 522 TGGVFTEQVIRPTGLIDPPVDIRPIESQVDDLVHEARETAKQGYRTLVTTLTKRMAEDLT 581 Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 EYL+E ++VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIPECGLVAILDA Sbjct: 582 EYLHEAGLKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECGLVAILDA 641 Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 DKEGFLRS+TSLIQTIGRAARNV+ +VILYAD+IT S++ A+ ET+RRREKQ +N++H Sbjct: 642 DKEGFLRSETSLIQTIGRAARNVDGRVILYADSITGSMERAMAETSRRREKQQAYNEEHG 701 Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 I P++++ I +++ + +D T + I+ + + +A+++ L +M AA +L Sbjct: 702 ITPETIRRSITDIVGHLASKDQVTVDTGIEDRPHMVGHNL-RAYIEELEGKMRAAAADLE 760 Query: 780 FEEAARIRDEIKRLK 794 FEEA R+RDEI++L+ Sbjct: 761 FEEAGRLRDEIRKLE 775 >gi|126733419|ref|ZP_01749166.1| excinuclease ABC, B subunit [Roseobacter sp. CCS2] gi|126716285|gb|EBA13149.1| excinuclease ABC, B subunit [Roseobacter sp. CCS2] Length = 736 Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/655 (63%), Positives = 522/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE QRPAI++A Sbjct: 34 FVLSTEFEPAGDQPTAIKELSEGIVNGERDQVLLGATGTGKTFTMAKMIEETQRPAIILA 93 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 94 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 153 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M + +G +Q+++++ L+ QQY+R Sbjct: 154 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIHVGREYDQRKIMADLIAQQYRRN 213 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG K E +++Y Sbjct: 214 DQAFQRGTFRVRGDSLEIWPAHLDDRAWKLSFFGEELETITEFDPLTGDKTDTFEKVRVY 273 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A+ IK+EL+MRL +L EG+LLEAQRLEQR +DLEMLE TG C Sbjct: 274 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVGEGKLLEAQRLEQRCNFDLEMLEATGVCN 333 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 334 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 393 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ G+ EQIIRPTGL+DP +E Sbjct: 394 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQIIRPTGLIDPEIE 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ T+E Sbjct: 454 IRPVDMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTIE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QT GRAAR Sbjct: 514 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTTGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRR KQ+ +N++H I PQ+VK+ + +++ + D Sbjct: 574 NAEGRVIMYADRITGSMERAIKETDRRRAKQVAYNEEHGITPQTVKKNVEDILAGLYKGD 633 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + ++ A L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 634 VDMNRVTAKVDK-PMAGANLAAVLDGLRTDMRKAAENLEFEEAARLRDEVKRLET 687 >gi|58040289|ref|YP_192253.1| excinuclease ABC subunit B [Gluconobacter oxydans 621H] gi|58002703|gb|AAW61597.1| Excinuclease ABC subunit B [Gluconobacter oxydans 621H] Length = 759 Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/655 (63%), Positives = 521/655 (79%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQP AIA+L++G+ E+ Q+LLGVTGSGKTF+MAKVIEA Q+P +++A Sbjct: 57 FVVKSDYEPAGDQPTAIAELVQGVEGGERDQVLLGVTGSGKTFSMAKVIEATQKPTLILA 116 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH Sbjct: 117 PNKTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 176 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G S+++ L+ +LV+ QY+R Sbjct: 177 AATQALLERNDVIIVASVSCIYGIGSVETYSKMVVRLEVGGSIDRDRLIKALVELQYRRN 236 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP ED AWRVS+FG++I++I EF PLTG K ++ I +Y Sbjct: 237 DAAFERGTFRVRGEQIDIFPVQNEDRAWRVSLFGDEIDQIVEFDPLTGNKTADLAEISVY 296 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTLN AM IK EL+ RL + +EG+LLEA+RL QR T+DLEM+ETTG+C+ Sbjct: 297 ANSHYVTPRPTLNQAMIGIKNELRQRLAQFTEEGKLLEAERLSQRTTFDLEMIETTGACK 356 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD RK+ L++Y Sbjct: 357 GIENYSRYLSGRGPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDRARKSVLSDY 416 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL F EWN RP +I VSATPG WE+EQ G+ EQIIRPTGL+DP + Sbjct: 417 GFRLPSCIDNRPLAFGEWNAFRPQSIFVSATPGPWEMEQTGGVFAEQIIRPTGLIDPVTD 476 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E A +G R+L+T LTKRMAEDLT+YL E ++VRY+HS+V TLE Sbjct: 477 VRPVEGQVDDLLHECREAISKGGRVLVTTLTKRMAEDLTDYLGEAGVKVRYLHSDVDTLE 536 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLDIPEC +VAILDADKEGFLRSKTSLIQTIGRAAR Sbjct: 537 RIEIIRDLRLGAFDVLVGINLLREGLDIPECSVVAILDADKEGFLRSKTSLIQTIGRAAR 596 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V+LYAD +T S++ AI+ET RRR KQ E N+ H I P +V+ KI + + + +D Sbjct: 597 NVDGRVLLYADKMTDSLKYAIEETARRRAKQTEWNEAHGITPMTVRSKIGDALSSVFEQD 656 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T K A ++ L K+M AA NL+FE+AAR+RDE+KRL++ Sbjct: 657 YVTVAPDGSGDTEQFVGKSLPATIQDLEKRMREAAANLDFEQAARLRDEVKRLEA 711 >gi|255261669|ref|ZP_05341011.1| excinuclease ABC, B subunit [Thalassiobium sp. R2A62] gi|255104004|gb|EET46678.1| excinuclease ABC, B subunit [Thalassiobium sp. R2A62] Length = 727 Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/655 (63%), Positives = 522/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M TD+ P+GDQP AI +L G++ E+ Q+LLGVTGSGKTFTMAKVIE QRPAI++A Sbjct: 25 FRMDTDFEPAGDQPTAIKELTTGVNEGERDQVLLGVTGSGKTFTMAKVIEETQRPAIILA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 85 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+Y M + G +Q+++++ L+ QQYKR Sbjct: 145 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIIAGQEYDQRKVIADLIAQQYKRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+K + I++Y Sbjct: 205 DAAFQRGTFRVRGDSLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGEKTGTFDKIRVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+ A+ IK+EL+MRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 265 ANSHYVTPKPTMTQAVIGIKKELRMRLDQLVSEGKLLEAQRLEQRCNFDIEMLEATGVCN 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WE+EQ G+ EQ+IRPTGL+DP +E Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWEIEQTGGVFAEQVIRPTGLLDPEIE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DE+ A G R L+T LTKRM+EDLTEY++E+ IRVRYMHS++ T+E Sbjct: 445 IRPVEMQVDDLLDEVRKVAADGYRTLVTTLTKRMSEDLTEYMHEQGIRVRYMHSDIDTIE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ A+ ET RRR KQ +N +H I P +VK+ + +++ + D Sbjct: 565 NADGRVIMYADRITGSMERAMGETNRRRVKQEAYNIEHGITPATVKKNVEDILAGLYKGD 624 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + L+ + L+ LR M AA+NL FEEAA +RDE+KRL++ Sbjct: 625 TDQSRVTAQIDK-PLAGANLQTVLEGLRTDMRKAAENLEFEEAASLRDEVKRLET 678 >gi|209965175|ref|YP_002298090.1| excinuclease ABC, B subunit, putative [Rhodospirillum centenum SW] gi|209958641|gb|ACI99277.1| excinuclease ABC, B subunit, putative [Rhodospirillum centenum SW] Length = 778 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/651 (63%), Positives = 524/651 (80%), Gaps = 1/651 (0%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +++ P+GDQP AIA+L +G+ E+ Q+LLGVTGSGKTFTMA VI+A+QRP +++APNK Sbjct: 51 SEFAPAGDQPRAIAELTEGLRRGERDQVLLGVTGSGKTFTMAHVIQALQRPTLILAPNKT 110 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKES+INEQIDRMRH+ATR Sbjct: 111 LAAQLYGEMKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESTINEQIDRMRHAATR 170 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER D ++V+SVSCIYGIGSVE+Y M V + +G ++ +++ L LV+ QY+R D G Sbjct: 171 ALLERRDAVIVASVSCIYGIGSVETYQAMTVDVVVGQALHRQKFLQQLVELQYRRNDAGF 230 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFRV GD++E+FP+H+ED AWR S+FG+++E I EF PLTG+K ++ ++IYANSH Sbjct: 231 SRGTFRVRGDTVELFPAHMEDRAWRFSLFGDEVEAIHEFDPLTGEKQGALKEVRIYANSH 290 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTP+PTL A++ IK +LK+RL E EG+LLEAQRLEQR T+D+EM+ TGSC IEN Sbjct: 291 YVTPKPTLQQAVEQIKRDLKLRLEEFYAEGKLLEAQRLEQRTTFDIEMMAATGSCAGIEN 350 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYL+GRNPGEPPPTLFEY+PED+LL VDESHV +PQI GM+RGDF RK+TLA++GFRL Sbjct: 351 YSRYLSGRNPGEPPPTLFEYLPEDALLIVDESHVMVPQIGGMFRGDFMRKSTLADFGFRL 410 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PSC DNRPL+FEEW+ +RP T+ VSATPG WELE+ G+ VEQ++RPTGLVDP V +R Sbjct: 411 PSCKDNRPLKFEEWDTMRPPTVFVSATPGPWELERTGGVFVEQVVRPTGLVDPEVIVRPT 470 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 TQV+DV E+ +GLR+L+T LTK+MAE LTEY+ E I+VRY+HS+V+TLERIEI Sbjct: 471 ETQVDDVMAEVREVVAKGLRVLVTTLTKKMAEALTEYMMEAGIKVRYIHSDVETLERIEI 530 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEG+LRS+TSLIQTIGRAARN+ Sbjct: 531 IRDLRLGVFDVLIGINLLREGLDIPECGLVAILDADKEGYLRSRTSLIQTIGRAARNLEG 590 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 + ILYAD T S++ A++ET RRR +QL +N +H I P+SV++ I +V+ + E Sbjct: 591 RAILYADKETASMKAALEETARRRARQLAYNAEHGITPESVRKNIADVLGSV-YERGDRV 649 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A L+ K KA + L K+M AA +L FE AA+IRDEI+RL++ Sbjct: 650 EVDTGAAGNLLAGKDIKAVIADLEKKMRTAAADLEFETAAKIRDEIRRLEA 700 >gi|288958421|ref|YP_003448762.1| excinuclease ABC subunit B [Azospirillum sp. B510] gi|288910729|dbj|BAI72218.1| excinuclease ABC subunit B [Azospirillum sp. B510] Length = 713 Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/655 (64%), Positives = 519/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AIA+L G+ EK Q+LLGVTGSGKTFTMA VI+ +QRP +++A Sbjct: 23 FVISSDFKPSGDQPTAIAELTAGLGQGEKDQVLLGVTGSGKTFTMAHVIQTVQRPTLILA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH Sbjct: 83 PNKTLAAQLYGEMKSFFPTNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS+M V L+ G+ + Q ELL L + QYKR Sbjct: 143 SATRALLERDDVIIVASVSCIYGIGSVETYSEMTVDLRKGEVIAQPELLRKLTELQYKRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD++E+FP+H+ED AWR+S+FG++IE I E PLTG+K+ +E +++Y Sbjct: 203 DAAFGRGLFRVRGDTVELFPAHMEDRAWRISLFGDEIEGIHEIDPLTGEKLAALEAVRVY 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVTP+PTLN A+ IK++LK RL E EG+LLEAQRLEQR T+D+EM+ TGSC Sbjct: 263 PNSHYVTPKPTLNQAISQIKKDLKERLEEFAAEGKLLEAQRLEQRTTFDIEMMAATGSCA 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFEY+P ++LL VDESHV +PQI GMYRGD RK+TL++Y Sbjct: 323 GIENYSRYLTGRAPGEPPPTLFEYLPAEALLIVDESHVMVPQIGGMYRGDLMRKSTLSDY 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEEW +RP T+ VSATPG WELE+ G EQ++RPTGL+DPPV Sbjct: 383 GFRLPSAKDNRPLKFEEWEGMRPQTVFVSATPGPWELERTGGAFTEQLVRPTGLIDPPVI 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E +G R+L+T LTK+MAE LTEY++E +RVRY+HS+V+TLE Sbjct: 443 IRPTETQVDDLIGECKEVVAKGYRVLVTTLTKKMAEALTEYMHEAGLRVRYIHSDVETLE 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DVLVGINLLREGLDIPEC LVAILDADKEG+LRS+TSLIQTIGRAAR Sbjct: 503 RIEIIRDLRLGAYDVLVGINLLREGLDIPECALVAILDADKEGYLRSRTSLIQTIGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ + ILYAD IT S++ AIDET RRREKQ+ +N +H I P+SVK+ I ++++ + E Sbjct: 563 NIDGRAILYADKITDSMKYAIDETARRREKQMAYNLEHGITPESVKKAIGDILESV-FER 621 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + L KA + L K+M AA +L FEEAAR+RDE++RL++ Sbjct: 622 GDHVTVKTGLGKEELVGHNLKAVIADLEKRMRAAAADLEFEEAARLRDELRRLEA 676 >gi|114800055|ref|YP_761722.1| excinuclease ABC subunit B [Hyphomonas neptunium ATCC 15444] gi|114740229|gb|ABI78354.1| excinuclease ABC, B subunit [Hyphomonas neptunium ATCC 15444] Length = 681 Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/668 (62%), Positives = 530/668 (79%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +Y P+GDQ AI +L++GI + E+ Q+LLG TG+GKTFTMAK+IEA QRPA+++A Sbjct: 9 FRVAAEYEPAGDQRTAIPELVEGITAGERDQVLLGATGTGKTFTMAKIIEATQRPALILA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP N+VEYFVSYYDYYQPEAYVPR+D YIEKESSINE IDRMRH Sbjct: 69 PNKTLAAQLYGEFKSFFPDNSVEYFVSYYDYYQPEAYVPRSDLYIEKESSINEAIDRMRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR++LER+D I+VSSVSC+YGIGSVESY+ M LK GD ++ K++ + LV QY R Sbjct: 129 SATRAILERDDVIIVSSVSCLYGIGSVESYTSMTFTLKAGDRIDPKQVTARLVANQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I+IFP+H ED AW++S FG+++E I+EF PLTG+ ++ + +KIY Sbjct: 189 DVAFGRGAFRVKGDVIDIFPAHYEDRAWKLSFFGDELESITEFDPLTGRTMQKLPQVKIY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSH+VTPRPTLN A++ IK ELK + EK G+LLEAQR+EQR TYDLEML TGSC Sbjct: 249 ANSHHVTPRPTLNQAIEKIKAELKTTIAHFEKNGKLLEAQRIEQRCTYDLEMLAATGSCN 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFEY+PE++L+F DESH TIPQI M++GDF RK+TLAEY Sbjct: 309 GIENYSRYLTGRKPGEPPPTLFEYLPENALVFTDESHQTIPQIGAMFKGDFSRKSTLAEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+F+EW+ +RP T+ VSATPG WE+E+ G+ EQ+IRPTGL+DPPVE Sbjct: 369 GFRLPSCIDNRPLKFDEWDAMRPQTVHVSATPGKWEMERTGGVFTEQVIRPTGLIDPPVE 428 Query: 561 IR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 +R QV+D+ E AA G+R L+T LTK+MAE+LT++L+E ++VRYMHS+V Sbjct: 429 VRPVSNDGANQVDDIMAEAKTAAANGMRTLITTLTKKMAENLTDFLHENGVKVRYMHSDV 488 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSL+QTIG Sbjct: 489 DTIERIEIIRDLRLGVFDVLVGINLLREGLDIPECGLVGILDADKEGFLRSETSLVQTIG 548 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN ++KVILYAD +T S+Q A+DET+RRREKQ+ +N +H I P ++K + +++ + Sbjct: 549 RAARNADAKVILYADRVTGSMQRAMDETSRRREKQMAYNIEHGITPTTIKRAVSDILSEL 608 Query: 737 LLEDAATTN-------ISIDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARI 786 + +A+ + +S + + L L + G KA + SL KQM AA NL FE AAR+ Sbjct: 609 GEKPSASRSRRNRERGVS-EEKPLPLRGETGHNLKAAIASLEKQMREAAANLEFETAARL 667 Query: 787 RDEIKRLK 794 RDE+KRL+ Sbjct: 668 RDEVKRLR 675 >gi|254460200|ref|ZP_05073616.1| excinuclease ABC, B subunit [Rhodobacterales bacterium HTCC2083] gi|206676789|gb|EDZ41276.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium HTCC2083] Length = 737 Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/655 (62%), Positives = 522/655 (79%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+I+ QRPAI++A Sbjct: 37 FELKSEFEPAGDQPTAIKELCEGIDAGERDQVLLGATGTGKTFTMAKMIQQTQRPAIILA 96 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL+ EFK FFP NAVEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH Sbjct: 97 PNKTLAAQLFGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 156 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+++SVSCIYGIGSVE+Y M L++G + +Q+ ++ LV QQYKR Sbjct: 157 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLEVGKNYDQRSVMQDLVAQQYKRN 216 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+EIFP+HLED AW+ S FG+++E I EF PLTG+K + +++Y Sbjct: 217 DAAFARGSFRVRGDSLEIFPAHLEDRAWKFSFFGDELESIVEFDPLTGEKKDTKDRVRVY 276 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTP+PT+N A++ IK+EL+MRL +L EG+LLEAQRLEQR +D+EMLE TG C Sbjct: 277 ANSHYVTPKPTMNQAVQKIKQELRMRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVCN 336 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 337 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 396 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP WELE G+ EQIIRPTGL+DP VE Sbjct: 397 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEATGGVFTEQIIRPTGLLDPKVE 456 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ DE+ G R L+T LTKRM+EDLTEY++E+ I+VRYMHS++ T+E Sbjct: 457 IRPVDTQVDDLLDEVRKVTADGFRTLVTTLTKRMSEDLTEYMHEQGIKVRYMHSDIDTIE 516 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 517 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 576 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ A+ ET RRR KQ +N +H I P +VK+ + +V+ + D Sbjct: 577 NAEGRVIMYADKITGSMERALGETDRRRAKQEAYNLEHGITPATVKKNVEDVLAGLYKGD 636 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + L+ +A L LR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 637 VDMNRVTAKIDK-PLAGANLQAVLDGLRVDMRKAAENLEFEEAARLRDEVKRLEA 690 >gi|162147890|ref|YP_001602351.1| excinuclease ABC subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209542507|ref|YP_002274736.1| excinuclease ABC subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|161786467|emb|CAP56049.1| putative UvrABC system protein B [Gluconacetobacter diazotrophicus PAl 5] gi|209530184|gb|ACI50121.1| excinuclease ABC, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 743 Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/653 (63%), Positives = 519/653 (79%) Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 +Q+ Y P+GDQP AI +L+ G+ E+ Q+LLGVTGSGKTFTMAK+IEA Q+P +++APN Sbjct: 37 IQSPYEPAGDQPRAIGELVAGVEGGERDQVLLGVTGSGKTFTMAKIIEATQKPTLILAPN 96 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH+A Sbjct: 97 KTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRHAA 156 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 T++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G +++ L+ +LV QY+R D Sbjct: 157 TQALLERNDVIIVASVSCIYGIGSVETYSRMVVRLEVGGEIDRDRLVKALVDLQYRRNDA 216 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 RGTFRV G+S+++FP ED AWR+S+FG++I+ I+EF PLTG K +++ + IYAN Sbjct: 217 AFQRGTFRVRGESVDVFPVQNEDRAWRISLFGDEIDAITEFDPLTGDKTGDLQEVSIYAN 276 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPRPTLN A+ IK EL+ RL +L +EG+LLEA+RL+QR T+DLEM+ETTG C+ I Sbjct: 277 SHYVTPRPTLNQAVIGIKHELRQRLNDLTEEGKLLEAERLQQRTTFDLEMIETTGVCKGI 336 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGDF RK+ L+E+GF Sbjct: 337 ENYSRYLSGRQPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDFARKSILSEFGF 396 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPSC+DNRPL+F EW+ RP TI VSATPG WE+E+ G+ EQ+IRPTGL+DP +IR Sbjct: 397 RLPSCLDNRPLKFAEWDLFRPQTIFVSATPGPWEMERVGGVFAEQVIRPTGLIDPVTDIR 456 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 QV+D+ E L G R+L+T LTKRMAEDLT+Y+ E IRVRY+HS+V TLERI Sbjct: 457 PVERQVDDLLAECRLTIAAGGRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLERI 516 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARNV Sbjct: 517 EIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLVQTIGRAARNV 576 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + +V+LYAD +T S++ AI+ET RRREKQ N H I PQSV+++I E + + +D Sbjct: 577 DGRVVLYADKMTDSLRYAIEETARRREKQSAWNAAHGITPQSVRKQIGEALSSVFEQDYV 636 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + D K + + L K+M AA +L FE AAR+RDEIKRL++ Sbjct: 637 TVAPTKDGDVAEFVGKDLGSAIAELEKRMRAAAADLEFETAARLRDEIKRLEA 689 >gi|296533738|ref|ZP_06896286.1| excision endonuclease subunit UvrB [Roseomonas cervicalis ATCC 49957] gi|296265933|gb|EFH12010.1| excision endonuclease subunit UvrB [Roseomonas cervicalis ATCC 49957] Length = 746 Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/658 (63%), Positives = 522/658 (79%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 Q+ + Y P+GDQPAAI QL++G+ E+ Q+LLGVTGSGKTFTMAKVIE +QRP +++A Sbjct: 25 LQVVSPYEPAGDQPAAIGQLVEGLRQGERDQVLLGVTGSGKTFTMAKVIEHVQRPTLILA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK++ INEQIDRMRH Sbjct: 85 PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKDAQINEQIDRMRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLERND I+V+SVSCIYGIGSVE YS M+++L++G + + LL +LV+QQY+R Sbjct: 145 SATQALLERNDVIIVASVSCIYGIGSVELYSNMVIKLQLGGRMARDVLLKALVEQQYRRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++++++PSHLED AWR+S+FG++I+ + EF PLTG+ +E++ IY Sbjct: 205 DAAFQRGTFRVRGETVDVWPSHLEDRAWRISLFGDEIDGLREFDPLTGEIAGEMESVAIY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTL A++ I+ ELK RL EL EG+LLEAQRLEQR T+DLEM+ETTGSC+ Sbjct: 265 ANSHYVTPRPTLLQAIRDIRVELKQRLEELNAEGKLLEAQRLEQRTTFDLEMMETTGSCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTLFEY+PE++LL VDESHVT+PQI GMYRGDF RK L+E+ Sbjct: 325 GIENYSRYLSGRGPGQPPPTLFEYLPENALLVVDESHVTVPQIGGMYRGDFARKTILSEF 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ RP T+ VSATPG WE+E+ G+ EQ+IRPTGL DP E Sbjct: 385 GFRLPSCMDNRPLKFEEWDSFRPDTLFVSATPGGWEMERSGGVFAEQVIRPTGLTDPVCE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E QQG R+L+T LTKRMAEDLTEY+ E I+VRY+HS+V TLE Sbjct: 445 IRPVEGQVDDLLAECRTVMQQGGRVLVTTLTKRMAEDLTEYMTEAGIKVRYLHSDVDTLE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR G FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 505 RIEIIRDLRKGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSTTSLIQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +V+LYAD +T S++ A++ET RRR KQ +N +H I PQ+++ +I +V+ + +D Sbjct: 565 NAEGRVVLYADRMTDSLKRALEETDRRRAKQQAYNAEHGITPQTIRRQISDVLQSVYEQD 624 Query: 741 ---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T D K +A + L ++M AA +L FE AAR+RDEIKRL++ Sbjct: 625 YVTVAPTAAEADGPA-EFVGKDLRASIAELERKMRAAAADLEFETAARLRDEIKRLEN 681 >gi|260575335|ref|ZP_05843335.1| excinuclease ABC, B subunit [Rhodobacter sp. SW2] gi|259022595|gb|EEW25891.1| excinuclease ABC, B subunit [Rhodobacter sp. SW2] Length = 726 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/655 (63%), Positives = 517/655 (78%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AIA+L GI + E Q+LLG TG+GKTFTMAKVIEA QRPAI++A Sbjct: 27 FVLASPFQPAGDQPTAIAELTAGIDAGEHDQVLLGATGTGKTFTMAKVIEATQRPAIILA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH Sbjct: 87 PNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER+D I+V+SVSCIYGIGSVE+YS M L +G + + ++S LV Q ++R Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGQPYDLRGIMSELVAQAFRRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV GDS+E++P+HLED AWR S FG+ +E I+EF PLTG K + + I+IY Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGDQLEAITEFDPLTGAKTDSFKQIRIY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPT+ A+ IK+EL+ L + G+LLEAQRLEQR ++DLEMLE TG C Sbjct: 267 ANSHYVTPRPTMQQAILGIKKELRQTLDLMVLNGKLLEAQRLEQRTSFDLEMLEATGVCN 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+ Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP TI VSATP +WELEQ G EQ+IRPTGL+DP +E Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPRTIFVSATPAAWELEQSGGTFAEQVIRPTGLLDPVIE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ DEI A GLR+L+T LTKRMAEDLTEY +E+ IR+RYMHS++ T+E Sbjct: 447 IRPVEMQVDDLLDEIRKVALLGLRVLVTTLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + + I+YAD IT S++ AI ET RRR+KQ+ +N H+I P ++++ + +V+ + D Sbjct: 567 NSDGRAIMYADRITGSMERAIGETNRRRDKQIAYNTAHDITPTTIRKNVEDVLAGLWQGD 626 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ + + AHL SLR M AA+NL FEEAAR+RDE+KRL++ Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDSLRLAMRKAAENLEFEEAARLRDEVKRLQA 680 >gi|330993416|ref|ZP_08317351.1| UvrABC system protein B [Gluconacetobacter sp. SXCC-1] gi|329759446|gb|EGG75955.1| UvrABC system protein B [Gluconacetobacter sp. SXCC-1] Length = 747 Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/655 (63%), Positives = 520/655 (79%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L+ G+ E+ Q+LLGVTGSGKTFTMAK+IEA Q+P +V+A Sbjct: 38 FRVHSPYEPAGDQPTAIAELVSGVEGGERDQVLLGVTGSGKTFTMAKIIEATQKPTLVLA 97 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH Sbjct: 98 PNKTLAAQLYAEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 157 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G +++ +L+ LV+ QY+R Sbjct: 158 AATQALLERNDVIIVASVSCIYGIGSVETYSRMVVKLEVGGEIDRDKLIRGLVELQYRRN 217 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++I++FP ED AWR+S+FG++I+EISEF PLTG+K ++E+I IY Sbjct: 218 DAAFQRGTFRVRGETIDVFPVQNEDRAWRISLFGDEIDEISEFDPLTGEKTGDLESISIY 277 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTL AM IK+EL+ L +EG+LLEA+RL+QR T+DLEM+ETTG C+ Sbjct: 278 ANSHYVTPRPTLTQAMTGIKQELRETLARFNEEGKLLEAERLQQRTTFDLEMIETTGVCK 337 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLFEY+PED+LL VDESHVT+PQI GM RGD RK+ LAE+ Sbjct: 338 GIENYSRYLSGRAPGEPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEF 397 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL F EW+ RP T+ VSATPG WE+ + +G+ EQ+IRPTGL+DP Sbjct: 398 GFRLPSCLDNRPLTFAEWDSYRPQTVFVSATPGPWEMRRTEGVFAEQVIRPTGLIDPVTI 457 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E G R+L+T LTKRMAEDLTEY+ E IRVRY+HS+V TLE Sbjct: 458 VRPVEHQVDDLLAECRQTIADGGRVLVTTLTKRMAEDLTEYMNEAGIRVRYLHSDVDTLE 517 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 518 RIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAAR 577 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V+LYAD +T S+ AI+ET RRREKQ N++H I PQSV++ I E I + +D Sbjct: 578 NVDGRVLLYADRMTDSLAYAIEETARRREKQNLWNEEHGITPQSVRKHIGEAISSVFEQD 637 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + + D + K KA + L K+M A+ L FE AA +RDEI+RL++ Sbjct: 638 YVTVSPTADGSVQEMVGKDYKAAIAELEKKMRAASAELEFETAAHLRDEIRRLEA 692 >gi|296115082|ref|ZP_06833724.1| excinuclease ABC subunit B [Gluconacetobacter hansenii ATCC 23769] gi|295978419|gb|EFG85155.1| excinuclease ABC subunit B [Gluconacetobacter hansenii ATCC 23769] Length = 763 Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/656 (63%), Positives = 527/656 (80%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + Y P+GDQP AI++L+ GI E+ Q+LLGVTGSGKTFTMAKVIEA Q+P +V+ Sbjct: 51 LFKINSPYEPAGDQPTAISELVAGIEGGERDQVLLGVTGSGKTFTMAKVIEATQKPTLVL 110 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMR Sbjct: 111 APNKTLAAQLYAEMKEFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMR 170 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L+ G S+++ +L+ +LV+ QY+R Sbjct: 171 HAATQALLERNDVIIVASVSCIYGIGSVETYSRMVVRLESGGSIDRDQLVKALVELQYRR 230 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D G RGTFRV G+S++IFP ED AWRV++FG++I+EI EF PLTG K +++ I I Sbjct: 231 NDAGFQRGTFRVRGESVDIFPVQNEDRAWRVTLFGDEIDEIIEFDPLTGDKTADLQEISI 290 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YANSHYVTPRPTLN A+ IK EL+ +L L KEG+LLEA+RL+QR T+DLEM+ETTG C Sbjct: 291 YANSHYVTPRPTLNQAVTGIKAELRTQLEHLTKEGKLLEAERLQQRTTFDLEMIETTGVC 350 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + IENYSRYL+GR PGEPPPTLFEY+PED+LL VDESHVT+PQI GM RGD+ RK+ LAE Sbjct: 351 KGIENYSRYLSGRKPGEPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDYARKSVLAE 410 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPSC+DNRPL+F EW+ RP +I VSATPG WE+++ G+ EQ+IRPTGL+DP Sbjct: 411 FGFRLPSCLDNRPLKFGEWDAFRPQSIFVSATPGPWEMQRTGGVFAEQVIRPTGLIDPVT 470 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R QV+D+ E A +G R+L+T LTKRMAEDLTEY+ E I+VRY+HS+V TL Sbjct: 471 DMRPVTHQVDDLLAECRKAIGEGGRVLVTTLTKRMAEDLTEYMNEAGIKVRYLHSDVDTL 530 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 531 ERIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAA 590 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ +V+LYAD +T S+ AI+ET RRREKQ N++ I P+SV++ I EV+ + + Sbjct: 591 RNVDGRVLLYADKMTDSLAYAIEETARRREKQSLWNEERGITPRSVRKHIGEVLSSVFEQ 650 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D T + + + + K K + L K+M A+ +L FE AAR+RDEI+RL++ Sbjct: 651 DYVTVSPTPEGDIKDMVGKDLKGAIADLEKRMRTASADLEFETAARLRDEIRRLEA 706 >gi|144899714|emb|CAM76578.1| Helicase subunit of the DNA excision repair complex [Magnetospirillum gryphiswaldense MSR-1] Length = 703 Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/658 (63%), Positives = 530/658 (80%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP+AIA L+ G+ +RE+ Q+LLGVTGSGKTFTMA VI +RPA+V+A Sbjct: 23 FKLVSDYQPAGDQPSAIATLVAGLEARERDQVLLGVTGSGKTFTMAHVIATTKRPALVLA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S INEQIDRMRH Sbjct: 83 HNKTLAAQLYAEMKSFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSQINEQIDRMRH 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LLER D I+V+SVSCIYGIGSVESY++M ++L +G+S+++ ELL LV+ QY R Sbjct: 143 AATRALLERRDVIIVASVSCIYGIGSVESYARMTLKLVVGESIDRTELLKRLVELQYTRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP H ED AW+VS++G++IE I+EF PLTG+K + + +Y Sbjct: 203 DAAFERGTFRVRGDSVEIFPVHYEDRAWQVSLWGDEIEGIAEFDPLTGEKTVRLSEVVVY 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPRPT+ A+ IK ELK + E EG+LLEAQR+ +R T+D+EMLETTG C+ Sbjct: 263 PSSHYVTPRPTITAALAGIKAELKATVAHFEAEGKLLEAQRIRERTTFDIEMLETTGHCK 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 SIENYSRYLTGR PGEPPPTLFEY+P D+LL VDESHVT+PQI GMYRGD+ RK+TL+E+ Sbjct: 323 SIENYSRYLTGRKPGEPPPTLFEYLPPDALLIVDESHVTVPQIGGMYRGDYARKSTLSEF 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+FEEW+ +RP+++ VSATPG WE+++ G+ EQ+IRPTGL+DP Sbjct: 383 GFRLPSCIDNRPLKFEEWDIMRPSSLFVSATPGPWEMDRTGGVFAEQVIRPTGLIDPICI 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E+ A QG R L+TVLTKRMAEDLTEYL++ IRVRY+HS++ TLE Sbjct: 443 IRPVEHQVDDLLAEVRQMAAQGHRTLVTVLTKRMAEDLTEYLHDHGIRVRYLHSDIDTLE 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR Sbjct: 503 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VILYAD +T S++ AIDET RRREKQ +N H I P+ +K+ + +V++ + +D Sbjct: 563 NIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAVGDVLESVYEKD 622 Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +++D L+ G A +K+ + K+M AA +L FEEAAR+RDE++RL++ Sbjct: 623 ----YLTVDTGDSGLAHGVGHNLAAVKADIEKRMKAAAADLEFEEAARLRDELRRLEA 676 >gi|83312902|ref|YP_423166.1| excinuclease ABC subunit B [Magnetospirillum magneticum AMB-1] gi|82947743|dbj|BAE52607.1| Helicase subunit of the DNA excision repair complex [Magnetospirillum magneticum AMB-1] Length = 683 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/656 (63%), Positives = 522/656 (79%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIA+L G+ + E+ Q+LLGVTGSGKTFTMA VI +RPA+V+A Sbjct: 3 FKIVSDYQPAGDQPQAIAELSAGVDADERDQVLLGVTGSGKTFTMAHVIARTRRPALVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S++NEQIDRMRH Sbjct: 63 PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LLER D I+V+SVSCIYGIGSVESY++M V LK+G+S+++ +LL LV+ QY R Sbjct: 123 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD++EIFP H ED AWR+S+FG++IE I+EF PLTG+K ++ + +Y Sbjct: 183 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPRPT+ A+K IK ELK L EG+LLEAQRLEQR +DLEMLETTG C+ Sbjct: 243 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 SIENYSRYLTGR PG+PPPTLFEY+PED+LL VDESHVT+PQI GMYRGDF+RK+ LAE+ Sbjct: 303 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+FEEW +RP T+ VSATPG WE+E+ G+ EQ+IRPTGL+DP Sbjct: 363 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E+ A+ G R L+T LTKRMAEDLTEY+++ +RVRY+HS++ TLE Sbjct: 423 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR Sbjct: 483 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VILYAD +T S+ A+ ET RRREKQ +N H I P+ +++ + +V+D + D Sbjct: 543 NIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVYEAD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + L+ A +K+ + K+M AA +L FEEAAR+RDE++RL++ Sbjct: 603 YVT--VGTGDSGLAHGVGHNLASVKADIEKRMKAAAADLEFEEAARLRDELRRLEA 656 >gi|71082789|ref|YP_265508.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique HTCC1062] gi|71061902|gb|AAZ20905.1| excinuclease ABC chain B [Candidatus Pelagibacter ubique HTCC1062] Length = 723 Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/658 (64%), Positives = 525/658 (79%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD+ P+GDQP AI QL+KG + E Q+LLGVTGSGKTFTMA+VIE RPA+++A Sbjct: 29 FKLVTDFKPAGDQPEAIKQLVKGANKDELSQVLLGVTGSGKTFTMAQVIERTNRPALILA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+SINEQIDRMRH Sbjct: 89 PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYTPEAYVPRSDTYIEKEASINEQIDRMRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK +++L+ +LV QYKR Sbjct: 149 SATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKKDYDYNREQLIKTLVHLQYKRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR G+ IEIFPSHLED AWR+S+FG+ +E+I EF PLTG +++++ IK+Y Sbjct: 209 DQSFYRGTFRARGEYIEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDLLKDLDVIKVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHY+TP+PT+ A+ IK EL++ L + +++ +LLEAQRLE+R +DLEM+E TGSC Sbjct: 269 ANSHYITPKPTIEQAVIKIKRELEVTLKKFKEQNKLLEAQRLEERTKFDLEMIEATGSCA 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD RK+ LAEY Sbjct: 329 GIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGDRSRKSNLAEY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +R T+ VSATPG WELEQ +G VEQIIRPTGL+DPPVE Sbjct: 389 GFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELEQTKGKFVEQIIRPTGLIDPPVE 448 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A+ QV+DV E + R+L+T LTK+MAEDLTEY +E IRVRY+HS++ TLE Sbjct: 449 IKPAKNQVDDVMHECKKTIDKNFRVLITTLTKKMAEDLTEYFHENGIRVRYLHSDIDTLE 508 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 509 RIEIMRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAAR 568 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VILYAD TKSI+ AI ET RRR Q+ +NKKHNI+ S+K++I +V++ + +D Sbjct: 569 NLDGRVILYADKETKSIKKAIQETDRRRTIQVAYNKKHNIDATSIKKEISDVLESVYEKD 628 Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T +I K HLK L K+M AA NL FEEAA+IRDEI+ L++S Sbjct: 629 YLKVGTGDNIGGNL--------KKHLKQLNKRMKDAATNLEFEEAAKIRDEIRNLEAS 678 >gi|114328889|ref|YP_746046.1| excinuclease ABC subunit B [Granulibacter bethesdensis CGDNIH1] gi|114317063|gb|ABI63123.1| excinuclease ABC subunit B [Granulibacter bethesdensis CGDNIH1] Length = 746 Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/655 (62%), Positives = 525/655 (80%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +DY P GDQP+AI +L+ G+ E+ Q+LLGVTGSGKTFTMAKVIE MQRPA+++A Sbjct: 38 LEVVSDYKPDGDQPSAIRELVSGLRQGERNQVLLGVTGSGKTFTMAKVIEEMQRPALILA 97 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTDTYIEK++ INEQIDRMRH Sbjct: 98 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTYIEKDAQINEQIDRMRH 157 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LLERND I+V+SVSCIYGIGSVE+Y++M+V+L++G +++ L +LV QY+R Sbjct: 158 AATQALLERNDVIIVASVSCIYGIGSVETYAKMVVRLQVGGQIDRDALARALVDLQYRRN 217 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR+ G++++IFP+ ED AWR+S+FG++I+ ISEF PLTG +E +Y Sbjct: 218 DAAFQRGTFRMRGETVDIFPASHEDRAWRISLFGDEIDAISEFDPLTGNVTAKLEEAVVY 277 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTL+ A+K IK+EL+ RL E + EG++LEA+RL QR+T+D+EM+ETTGSC+ Sbjct: 278 ANSHYVTPRPTLSQAIKEIKQELQQRLAEFDAEGKVLEAERLRQRVTFDIEMMETTGSCK 337 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTLFEY+P++++L VDESHVT+PQI GM RGD RK+ L+E+ Sbjct: 338 GIENYSRYLSGRAPGDPPPTLFEYLPDNAILIVDESHVTVPQIGGMERGDHARKSILSEF 397 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+F+EW RP T+ VSATPG WE+EQ G+ EQ+IRPTGL+DP E Sbjct: 398 GFRLPSCIDNRPLKFDEWERFRPETVFVSATPGPWEMEQTGGVFAEQVIRPTGLIDPITE 457 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ EI L +G R+L+T LTKRMAEDLTEYL E ++VRY+HS+V TLE Sbjct: 458 IRPVEHQVDDLLAEIRLVTAKGNRVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDVDTLE 517 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 518 RIEIIRDLRVGVFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSQTSLIQTIGRAAR 577 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYADT+T+S+ A++ET RRRE+Q N+ H I P +V+++I ++++ + +D Sbjct: 578 NVEGRVILYADTMTRSLTFAVEETARRRERQKAWNEAHGITPTTVRKQIGKMLESVFEQD 637 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + K +A + L ++M AA +L FEEA R+RDEI+RL++ Sbjct: 638 YVTVAPTSATSAAEFVGKDLRASITELERRMRAAAADLEFEEAGRLRDEIRRLEA 692 >gi|262276857|ref|ZP_06054650.1| excinuclease ABC subunit B [alpha proteobacterium HIMB114] gi|262223960|gb|EEY74419.1| excinuclease ABC subunit B [alpha proteobacterium HIMB114] Length = 715 Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/656 (63%), Positives = 525/656 (80%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AI +L G++ ++K Q+LLGVTGSGKTFTMAK+IE + RPAI++A Sbjct: 29 FKITSNFKPSGDQPMAIKELCSGLNDQQKNQVLLGVTGSGKTFTMAKIIETLNRPAIILA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FF +N+VEYFVSYYDYY PEAYVPR+DTYIEKESSINEQIDRMRH Sbjct: 89 PNKTLAAQLYGEMKSFFANNSVEYFVSYYDYYTPEAYVPRSDTYIEKESSINEQIDRMRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLE++D I+VSSVSCIYG+GS ESYS+M ++ E++ ++ L++ QYKR Sbjct: 149 SATRSLLEKDDVIIVSSVSCIYGLGSAESYSKMTFTFIKNENYERENIIKGLIELQYKRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++IEIFPSHLED AW++S+ + I EF PLTG K N+ IK+Y Sbjct: 209 DQNFQRGTFRVRGENIEIFPSHLEDRAWKLSLDEGKLVSIKEFDPLTGDKTENLNIIKVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHY+TPRPT+N A+K I+EEL++ + + E +LLEAQR+E+R +DLEM+E TGSC Sbjct: 269 ANSHYITPRPTVNQAIKQIREELRLTIDKFRGENKLLEAQRIEERTRFDLEMIEATGSCS 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GRN GEPPPTLFEY+P+++L+FVDESHVT+PQ++GMY+GD+ RK TL++Y Sbjct: 329 GIENYSRFLSGRNKGEPPPTLFEYLPDNALVFVDESHVTVPQLNGMYKGDYTRKKTLSDY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +RP T+ VSATPG WE+EQ +G+ EQIIRPTGL DP VE Sbjct: 389 GFRLPSCMDNRPLKFEEWDLMRPQTVFVSATPGHWEMEQTKGVFAEQIIRPTGLTDPEVE 448 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A+ QV+D+ +E ++ R+L+T LTK+MAEDLTEY E I+VRYMHS++ TLE Sbjct: 449 IRPAKNQVDDLLNECQGIIKKEQRVLVTTLTKKMAEDLTEYFDENGIKVRYMHSDIDTLE 508 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 509 RIEIIRDLRLGHFDVLVGINLLREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAAR 568 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVILYAD TKSI AI+ET RRR KQ E+NKK+NI S+K++I ++++ + +D Sbjct: 569 NVEGKVILYADKKTKSITKAIEETDRRRTKQQEYNKKNNICASSIKKEIGDILESVYEKD 628 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T+ + + K H+K+L+K M AADNL FE+AA IRDEI++L+ S Sbjct: 629 YLNTD------KFTKPGHNLKKHMKALKKDMQGAADNLEFEKAAEIRDEIRKLEQS 678 >gi|254456166|ref|ZP_05069595.1| excinuclease ABC, B subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083168|gb|EDZ60594.1| excinuclease ABC, B subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 723 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/656 (64%), Positives = 524/656 (79%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQM+TD+ P+GDQP AI QL+ G + + Q+LLGVTGSGKTFTMAKVIE RPA+++A Sbjct: 29 FQMKTDFKPAGDQPEAIKQLVNGANKDQLSQVLLGVTGSGKTFTMAKVIEKTNRPALILA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+SINEQIDRMRH Sbjct: 89 PNKTLAAQLYGEMKSFFPDNAVEYFVSYYDYYTPEAYVPRSDTYIEKEASINEQIDRMRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK ++EL+ SLV QYKR Sbjct: 149 SATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKTNYDYNREELIKSLVALQYKRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR G+ +EIFPSHLED AWR+S+FG+ +E+I EF PLTG + ++ IK+Y Sbjct: 209 DQNFYRGTFRARGEYLEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDLVNELDVIKVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHY+TP+PT+ A+ IK EL++ L + +++ +LLEAQRLE+R +DLEM+E TGSC Sbjct: 269 ANSHYITPKPTIEQAIIKIKRELEITLKKFKEQNKLLEAQRLEERTKFDLEMIEATGSCA 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD RK+ LAEY Sbjct: 329 GIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGDRSRKSNLAEY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +R T+ VSATPG WEL+Q + VEQ+IRPTGL+DPPVE Sbjct: 389 GFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELKQTKNKFVEQVIRPTGLIDPPVE 448 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A+ QV+D+ E R+L+T LTK+MAEDLTEYL+E I+VRYMHS++ TLE Sbjct: 449 IRPAKNQVDDLMHECLKVIDNNYRVLVTTLTKKMAEDLTEYLHENGIKVRYMHSDIDTLE 508 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPEC LV ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 509 RIEIMRDLRLGVFDVLVGINLLREGLDIPECALVGILDADKEGFLRSETSLIQTIGRAAR 568 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ KVILYAD TKSI+ AI ET RRR Q+ +NKKH I+ +++K++I +V++ + +D Sbjct: 569 NLDGKVILYADKETKSIKNAIKETDRRRTIQVAYNKKHKIDAKTIKKEIGDVLESVYEKD 628 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + + KK HLKSL K+M AA NL FEEAA+IRDEI++L++S Sbjct: 629 YVKVGTD---ENIGGNLKK---HLKSLNKRMKEAATNLEFEEAAKIRDEIRKLEAS 678 >gi|91762788|ref|ZP_01264753.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique HTCC1002] gi|91718590|gb|EAS85240.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique HTCC1002] Length = 723 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/658 (64%), Positives = 525/658 (79%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD+ P+GDQP AI +L+KG + E Q+LLGVTGSGKTFTMA+VIE RPA+++A Sbjct: 29 FKLVTDFKPAGDQPEAIKKLVKGANKEELSQVLLGVTGSGKTFTMAQVIERTNRPALILA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+SINEQIDRMRH Sbjct: 89 PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYTPEAYVPRSDTYIEKEASINEQIDRMRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK +++L+ +LV QYKR Sbjct: 149 SATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKKDYDYNREQLIKTLVHLQYKRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR G+ IEIFPSHLED AWR+S+FG+ +E+I EF PLTG +++++ IK+Y Sbjct: 209 DQSFYRGTFRARGEYIEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDLLKDLDVIKVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHY+TP+PT+ A+ IK EL++ L + +++ +LLEAQRLE+R +DLEM+E TGSC Sbjct: 269 ANSHYITPKPTIEQAVIKIKRELEVTLKKFKEQNKLLEAQRLEERTKFDLEMIEATGSCA 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD RK+ LAEY Sbjct: 329 GIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGDRSRKSNLAEY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +R T+ VSATPG WELEQ +G VEQIIRPTGL+DPPVE Sbjct: 389 GFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELEQTKGKFVEQIIRPTGLIDPPVE 448 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A+ QV+DV E + R+L+T LTK+MAEDLTEY +E IRVRY+HS++ TLE Sbjct: 449 IKPAKNQVDDVMHECKKTIDKNFRVLITTLTKKMAEDLTEYFHENGIRVRYLHSDIDTLE 508 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 509 RIEIMRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAAR 568 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VILYAD TKSI+ AI ET RRR Q+ +NKKHNI+ S+K++I +V++ + +D Sbjct: 569 NLDGRVILYADKETKSIKKAIQETDRRRTIQVAYNKKHNIDATSIKKEISDVLESVYEKD 628 Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T +I K HLK L K+M AA NL FEEAA+IRDEI+ L++S Sbjct: 629 YLKVGTGDNIGGNL--------KKHLKQLNKRMKDAATNLEFEEAAKIRDEIRNLEAS 678 >gi|241760917|ref|ZP_04759006.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374536|gb|EER63997.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 725 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/672 (62%), Positives = 523/672 (77%), Gaps = 5/672 (0%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 + PHR S ++ F++ +DY P+GDQP AI+ L K I E+ Q+LLGVTGSGKT Sbjct: 18 FVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQVLLGVTGSGKT 76 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYYQPEAYVPRTD Sbjct: 77 FTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYYQPEAYVPRTD 136 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS M +L G Sbjct: 137 TYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSSMTFRLLKGQL 196 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 V+Q+E++ LV QYKR ++ RG+FRV GD++EIFPSH ED+AWR+S FG++IEEISE Sbjct: 197 VDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISFFGDEIEEISE 256 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 F PLTG KI ++ IKIYANSHYVTP PTL A I+ EL RL E + EG+LLEAQRL Sbjct: 257 FDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDNRLREFKAEGKLLEAQRL 316 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 E+R +DLEM+ TG+C IENYSR+LTGR PGEPPPTLFEY+P+++LLFVDESH TIPQ Sbjct: 317 EERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYLPDNALLFVDESHQTIPQ 376 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 I+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T+ VSATPG WELEQ G Sbjct: 377 INGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQTVYVSATPGPWELEQTGG 436 Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 + VEQIIRPTGLVDP +E+R QV+++ E A G R L+T LTKRMAEDLTEY+ Sbjct: 437 VFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVTTLTKRMAEDLTEYM 496 Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 YE ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECGLVA+LDADKE Sbjct: 497 YEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAVLDADKE 556 Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722 GFLRS+TSLIQTIGRAARN +VILY D IT S+ A+ ET RRR KQ+ NK HNI P Sbjct: 557 GFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRRIKQIAWNKAHNITP 616 Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 +VK ++ +++ + D++ +I+ + + + K+M AA NL FE+ Sbjct: 617 ATVKRQVDDIVGHFGVIDSSEAAATIENHDPKVLARS----ISETEKEMLEAAANLEFEK 672 Query: 783 AARIRDEIKRLK 794 AA++RD + +LK Sbjct: 673 AAQLRDVLHQLK 684 >gi|56551258|ref|YP_162097.1| excinuclease ABC subunit B [Zymomonas mobilis subsp. mobilis ZM4] gi|60415994|sp|Q56998|UVRB_ZYMMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56542832|gb|AAV88986.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 740 Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/685 (62%), Positives = 529/685 (77%), Gaps = 13/685 (1%) Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172 D P +N + PHR S ++ F++ +DY P+GDQP AI+ L K I E+ Q+ Sbjct: 10 DEP--ENHSDFVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQV 66 Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYY Sbjct: 67 LLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYY 126 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS Sbjct: 127 QPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSS 186 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 M +L G V+Q+E++ LV QYKR ++ RG+FRV GD++EIFPSH ED+AWR+S Sbjct: 187 MTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISF 246 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++IEEISEF PLTG KI ++ IKIYANSHYVTP PTL A I+ EL RL E + Sbjct: 247 FGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDNRLREFKA 306 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EG+LLEAQRLE+R +DLEM+ TG+C IENYSR+LTGR PGEPPPTLFEY+P+++LLF Sbjct: 307 EGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYLPDNALLF 366 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 VDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T+ VSATP Sbjct: 367 VDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQTVYVSATP 426 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 G WELEQ G+ VEQIIRPTGLVDP +E+R QV+++ E A G R L+T LTK Sbjct: 427 GPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVTTLTK 486 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RMAEDLTEY+YE ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECG Sbjct: 487 RMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDIPECG 546 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LVA+LDADKEGFLRS+TSLIQTIGRAARN +VILY D IT S+ A+ ET RRR KQ+ Sbjct: 547 LVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRRIKQI 606 Query: 713 EHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769 NK HNI P +VK ++ +++ + +AA T + D + L+ S + K Sbjct: 607 AWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENHDPKVLARS-------ISETEK 659 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 +M AA NL FE+AA++RD + +LK Sbjct: 660 EMLEAAANLEFEKAAQLRDVLHQLK 684 >gi|260753114|ref|YP_003226007.1| excinuclease ABC subunit B [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552477|gb|ACV75423.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 740 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/685 (62%), Positives = 529/685 (77%), Gaps = 13/685 (1%) Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172 D P +N + PHR S ++ F++ +DY P+GDQP AI+ L K I E+ Q+ Sbjct: 10 DEP--ENHSDFVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQV 66 Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYY Sbjct: 67 LLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYY 126 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS Sbjct: 127 QPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSS 186 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 M +L G V+Q+E++ LV QYKR ++ RG+FRV GD++EIFPSH ED+AWR+S Sbjct: 187 MTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISF 246 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++IEEISEF PLTG KI ++ IKIYANSHYVTP PTL A I+ EL RL E + Sbjct: 247 FGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDSRLREFKA 306 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EG+LLEAQRLE+R +DLEM+ TG+C IENYSR+LTGR PGEPPPTLFEY+P+++LLF Sbjct: 307 EGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYLPDNALLF 366 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 VDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T+ VSATP Sbjct: 367 VDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQTVYVSATP 426 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 G WELEQ G+ VEQIIRPTGLVDP +E+R QV+++ E A G R L+T LTK Sbjct: 427 GPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVTTLTK 486 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RMAEDLTEY+YE ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECG Sbjct: 487 RMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDIPECG 546 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LVA+LDADKEGFLRS+TSLIQTIGRAARN +VILY D IT S+ A+ ET RRR KQ+ Sbjct: 547 LVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRRIKQI 606 Query: 713 EHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769 NK HNI P +VK ++ +++ + +AA T + D + L+ S + K Sbjct: 607 AWNKAHNIIPATVKRQVDDIVGHFGVVNSSEAAATIENHDPKVLARS-------ISETEK 659 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 +M AA NL FE+AA++RD + +LK Sbjct: 660 EMLEAAANLEFEKAAQLRDVLHQLK 684 >gi|23016719|ref|ZP_00056472.1| COG0556: Helicase subunit of the DNA excision repair complex [Magnetospirillum magnetotacticum MS-1] Length = 704 Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/655 (62%), Positives = 516/655 (78%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L G+ + E+ Q+LLGVTGSGKTFTMA VI +RPA+V+A Sbjct: 22 FKIVSDYQPAGDQPQAIDELSAGVVAEERDQVLLGVTGSGKTFTMAHVIARTKRPALVLA 81 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S++NEQIDRMRH Sbjct: 82 PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 141 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LLER D I+V+SVSCIYGIGSVESY++M V LK+G+ +++ +LL LV+ QY R Sbjct: 142 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGECIDRSDLLKRLVELQYTRN 201 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD++EIFP H ED AWR+S+FG++IE I+EF PLTG+K ++ + +Y Sbjct: 202 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 261 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPRPT+ A+K IK ELK L EG+LLEAQRLEQR +DLEMLETTG C+ Sbjct: 262 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 321 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 SIENYSRYLTGR PG+PPPTLFEY+PED+LL VDESHVT+PQI GMYRGDF+RK+ LAE+ Sbjct: 322 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 381 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL+FEEW +RP T+ VSATPG WE+E+ G+ EQ+IRPTGL+DP Sbjct: 382 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 441 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E+ A+ G R L+T LTKRMAEDLTEY+++ +RVRY+HS++ TLE Sbjct: 442 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 501 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR Sbjct: 502 RIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSKTSLIQTIGRAAR 561 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VILYAD +T S++ A+ ET RRR+KQ +N H I P+ +++ + +V+D + D Sbjct: 562 NIDGRVILYADKMTASLEYALAETNRRRDKQQAYNAAHGITPEGIRKAVSDVMDSVYEAD 621 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + + + K+M AA +L FEEAAR+RDE++RL++ Sbjct: 622 YVTVGTGDSGIKHGVGHNLATVK-ADIEKRMKAAAADLEFEEAARLRDELRRLEA 675 >gi|85710443|ref|ZP_01041507.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1] gi|85687621|gb|EAQ27626.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1] Length = 731 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/680 (62%), Positives = 538/680 (79%), Gaps = 6/680 (0%) Query: 118 KNGKIWTPHRSWSINNHSKDITF--FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175 + G+ +TPHR N K + F++ +DY P+GDQP AI +L++G + ++ Q LLG Sbjct: 14 ETGEEFTPHRP---NRPEKSMPGKKFKLVSDYEPAGDQPTAIKELVEGALAGDQTQTLLG 70 Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 VTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY E K+FFP NAVEYFVSYYDYYQPE Sbjct: 71 VTGSGKTFTMAKVIETLQRPALILAPNKILAAQLYGEMKSFFPENAVEYFVSYYDYYQPE 130 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 AYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS M+ Sbjct: 131 AYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSAMVF 190 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +K ++V+Q+EL+ LV QYKR D RG FRV GD++E+FPSH ED+AWR+S FG+ Sbjct: 191 DIKKDETVDQRELIRKLVALQYKRNDAAFTRGCFRVRGDNLELFPSHYEDMAWRISFFGD 250 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +IEEI+EF PLTG+K +++ +++YANSHYVTP PT+ A + IK EL+ RL ELE+EG+ Sbjct: 251 EIEEIAEFDPLTGKKGASLDKVRVYANSHYVTPGPTMKQATEAIKFELEHRLKELEEEGK 310 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 LLE QRLEQR +DLEM+ TGSC IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDE Sbjct: 311 LLEHQRLEQRTHFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDE 370 Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 SH T+PQI M RGD RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T VSATPG W Sbjct: 371 SHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFAVSATPGPW 430 Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 E+EQ G+ EQ+IRPTGL+DPPVEIR QV+D E A++G R L+T LTKRMA Sbjct: 431 EMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCIQECLATAKKGYRTLVTTLTKRMA 490 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDLTE+++E ++VRYMHS+V+TLERIE+IRDLR+G +DVL+GINLLREGLDIPECGLV Sbjct: 491 EDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRMGVYDVLIGINLLREGLDIPECGLVC 550 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S++ A+ ET RRREKQ N Sbjct: 551 ILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMAETDRRREKQKAFN 610 Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775 ++H I P+++K I +++ +D T + D + +L +++++ L K+M AA Sbjct: 611 EEHGITPKTIKRDIADIVAHTASQDGVTVDTG-DDEVNNLVGHNLRSYIEDLEKRMRDAA 669 Query: 776 DNLNFEEAARIRDEIKRLKS 795 NL FEEA R+RDEI+RL++ Sbjct: 670 ANLEFEEAGRLRDEIRRLEN 689 >gi|258541339|ref|YP_003186772.1| excinuclease ABC subunit B [Acetobacter pasteurianus IFO 3283-01] gi|256632417|dbj|BAH98392.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-01] gi|256635474|dbj|BAI01443.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-03] gi|256638529|dbj|BAI04491.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-07] gi|256641583|dbj|BAI07538.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-22] gi|256644638|dbj|BAI10586.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-26] gi|256647693|dbj|BAI13634.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-32] gi|256650746|dbj|BAI16680.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653737|dbj|BAI19664.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter pasteurianus IFO 3283-12] Length = 748 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/655 (62%), Positives = 519/655 (79%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ ++Y P+GDQP AI++L+ G+ + E+ Q+LLGVTGSGKTF+MAK+IEA Q+P +++A Sbjct: 44 MEVVSEYEPAGDQPQAISELVAGVEAGERDQVLLGVTGSGKTFSMAKIIEATQKPTLILA 103 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH Sbjct: 104 PNKTLAAQLYGEMKQFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 163 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G +++ +L+ SLV+ QY+R Sbjct: 164 AATQALLERNDVIIVASVSCIYGIGSVETYSRMVVKLELGGEIDRDKLIKSLVELQYRRN 223 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++I+IFP ED AWRVS+FG++++ + EF PLTG+K +++ I +Y Sbjct: 224 DAAFARGTFRVRGETIDIFPVQNEDRAWRVSLFGDEVDGLIEFDPLTGEKTADLQEITVY 283 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTLN A+K IK+EL+ +L K G+LLEA+RL+QR T+DLEMLETTG C+ Sbjct: 284 ANSHYVTPRPTLNQAIKGIKQELREQLDVFTKAGKLLEAERLDQRTTFDLEMLETTGVCK 343 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD RK+ LAE+ Sbjct: 344 GIENYSRYLSGRKPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEF 403 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL F EW+ RP ++ VSATPG WE+E+ G+ EQ+IRPTGLVDP Sbjct: 404 GFRLPSCLDNRPLNFAEWDKFRPQSLFVSATPGPWEMERTGGVFAEQVIRPTGLVDPITI 463 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E +G R+L+T LTKRMAEDLT+Y+ E IRVRY+HS+V TLE Sbjct: 464 IRPVEHQVDDLLAECRTTIGKGRRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLE 523 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 524 RIEIIRDLRMGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAAR 583 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +V+LYAD +T S+ A++ET RRREKQ+ N +H I PQSV++ I +++ + +D Sbjct: 584 NVEGRVLLYADKMTDSLTYAVEETARRREKQIAWNTEHGITPQSVRKNISDIVSSVFEQD 643 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T D + A + L K+M AA L FE AAR+RDEI+RL++ Sbjct: 644 YVTIAPDEDTGVAEFVGQDLGAAIAGLEKRMRSAAAELEFETAARLRDEIQRLEA 698 >gi|329114941|ref|ZP_08243697.1| UvrABC system protein B [Acetobacter pomorum DM001] gi|326695838|gb|EGE47523.1| UvrABC system protein B [Acetobacter pomorum DM001] Length = 749 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/655 (62%), Positives = 518/655 (79%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ ++Y P+GDQP AI +L+ G+ + E+ Q+LLGVTGSGKTF+MAK+IEA Q+P +++A Sbjct: 44 MEVVSEYEPAGDQPQAIRELVAGVEAGERDQVLLGVTGSGKTFSMAKIIEATQKPTLILA 103 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH Sbjct: 104 PNKTLAAQLYGEMKQFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 163 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G +++ +L+ SLV+ QY+R Sbjct: 164 AATQALLERNDVIIVASVSCIYGIGSVETYSRMVVKLELGGEIDRDKLIKSLVELQYRRN 223 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++I+IFP ED AWRVS+FG++++ + EF PLTG+K +++ I IY Sbjct: 224 DAAFARGTFRVRGETIDIFPVQNEDRAWRVSLFGDEVDGLIEFDPLTGEKTADLQEITIY 283 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTLN A+K IK+EL+ +L K G+LLEA+RL+QR T+DLEMLETTG C+ Sbjct: 284 ANSHYVTPRPTLNQAIKGIKQELREQLDVFTKAGKLLEAERLDQRTTFDLEMLETTGVCK 343 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD RK+ LAE+ Sbjct: 344 GIENYSRYLSGRKPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEF 403 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL F EW+ RP ++ VSATPG WE+E+ G+ EQ+IRPTGLVDP Sbjct: 404 GFRLPSCLDNRPLNFAEWDKFRPQSLFVSATPGPWEMERTGGVFAEQVIRPTGLVDPITI 463 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E +G R+L+T LTKRMAEDLT+Y+ E IRVRY+HS+V TLE Sbjct: 464 IRPVEHQVDDLLAECRTTIAKGGRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLE 523 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 524 RIEIIRDLRMGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 583 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +V+LYAD +T S+ A++ET RRREKQ+ N +H I PQSV++ I +++ + +D Sbjct: 584 NVEGRVLLYADKMTDSLTYAVEETARRREKQMAWNTEHGITPQSVRKHISDIVSSVFEQD 643 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T D + A + L K+M AA L FE AAR+RDEI+RL++ Sbjct: 644 YVTIAPDEDTGVAEFVGQDLGAAIAGLEKRMRSAAAELEFETAARLRDEIQRLEA 698 >gi|294085777|ref|YP_003552537.1| excinuclease ABC subunit B [Candidatus Puniceispirillum marinum IMCC1322] gi|292665352|gb|ADE40453.1| excinuclease ABC, B subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 732 Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/656 (62%), Positives = 511/656 (77%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+D+ P+GDQP AIA+L++G+ E+ Q+LLGVTGSGKTFT A VI M+RP +++A Sbjct: 43 FDLQSDFKPAGDQPTAIAELIEGVKQGERDQVLLGVTGSGKTFTAAHVIREMKRPTLILA 102 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+ FP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH Sbjct: 103 PNKTLAAQLYGEMKSLFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRH 162 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER+D I+V+SVSCIYGIGSVE+YS M ++ G+ ++++L + QYKR Sbjct: 163 SATRSLLERDDVIIVASVSCIYGIGSVETYSTMTQKITSGEDFPRQDMLRKFTELQYKRN 222 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D +RGTFRV GDS+E+FP+HLED AWR+S+FG+++E I EF PLTG+K ++ TI ++ Sbjct: 223 DTNFVRGTFRVRGDSVELFPAHLEDRAWRISLFGDEVESIHEFDPLTGEKFASLPTITVF 282 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHYVTPRPTL A K IK ELK RL EL + +LLEAQR+EQR +D+EM+E TG C Sbjct: 283 ANSHYVTPRPTLQQACKSIKIELKQRLAELTEANKLLEAQRIEQRTQFDVEMIEATGVCA 342 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLFEY+PE++LL VDESHVT+PQ+ MY+GDF RK+TLAE+ Sbjct: 343 GIENYSRYLSGRGPGEPPPTLFEYLPENALLIVDESHVTVPQLGAMYKGDFARKSTLAEH 402 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW RP TI VSATPG +E+E+ G+ EQI+RPTGL+DP Sbjct: 403 GFRLPSCMDNRPLKFEEWEGFRPQTIYVSATPGKYEMERTGGVFSEQIVRPTGLIDPECI 462 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E AA +G R+L+T LTK+MAE L+EY++E ++VRY+HS++ TLE Sbjct: 463 VRPTGNQVDDIIAECRDAAAKGQRVLITTLTKKMAEALSEYMFEAGLKVRYLHSDIDTLE 522 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FD+L+GINLLREGLDIPEC LV ILDADKEGFLRSKTSL+QTIGRAAR Sbjct: 523 RIEIMRDLRLGVFDILIGINLLREGLDIPECALVGILDADKEGFLRSKTSLVQTIGRAAR 582 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILY D IT S+Q A+DET RRR KQ NK H I P+SVK+ I +V+ + + Sbjct: 583 NVEGRVILYGDRITDSMQYALDETNRRRAKQEAWNKAHGITPESVKKDIADVLGSV-YDR 641 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + +L K + L M AA NL FEEAAR+RDEI+R++++ Sbjct: 642 ADHLTPQAGGKDGALVGNNFKTVIADLEASMKDAAANLEFEEAARLRDEIRRMEAA 697 >gi|254294193|ref|YP_003060216.1| excinuclease ABC subunit B [Hirschia baltica ATCC 49814] gi|254042724|gb|ACT59519.1| excinuclease ABC, B subunit [Hirschia baltica ATCC 49814] Length = 742 Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/734 (56%), Positives = 543/734 (73%), Gaps = 31/734 (4%) Query: 85 SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144 S + K ++ +SE A A L + LL + +W PHR S+ F+++ Sbjct: 5 SKTPKSSKSVSE------APASAFLYEGAEELL-HPSVWKPHRPERQWEKSEGGKLFELK 57 Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 ++Y P+GDQP AI +L+ G+ + EK Q+LLGVTGSGKT+TMA+VIE QRPA+++A NK Sbjct: 58 SEYEPAGDQPEAIKELVTGVETDEKDQVLLGVTGSGKTYTMAQVIERTQRPALILAHNKT 117 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY+EFKNFFP+N+VEYFVSYYDYY PEAYVPRTDTYIEKESSINE IDRMRH+ATR Sbjct: 118 LAAQLYAEFKNFFPNNSVEYFVSYYDYYMPEAYVPRTDTYIEKESSINEAIDRMRHAATR 177 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 ++LER+D I+V+SVSCIYGIGSVE+YS M L+ + + +++ LV QY R D+ Sbjct: 178 AVLERDDVIIVASVSCIYGIGSVETYSAMTFVLEEAQTRDPRDIAQDLVALQYTRNDVAF 237 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RGTFR+ GD ++I+P+H ED AW++S FG++IE I EF PLTG+K + + IK+YANSH Sbjct: 238 GRGTFRIKGDVLDIWPAHQEDRAWKISFFGDEIETIVEFDPLTGKKSKPLGKIKVYANSH 297 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 +VTPRPTLN A+K+IKEE+K + E EG+LLEAQR++QR +D+EM+ TGSC IEN Sbjct: 298 HVTPRPTLNQAVKHIKEEMKQTVARFEAEGKLLEAQRIQQRTEFDMEMMVATGSCAGIEN 357 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYL+GR PGEPPPT FEY+P+++L+FVDESH TIPQI MY+GD RK TLAE+GFRL Sbjct: 358 YSRYLSGRKPGEPPPTFFEYLPDNALVFVDESHQTIPQIGAMYKGDRSRKNTLAEFGFRL 417 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-- 562 PSC DNRPL+FEEW +RP T+ VSATPG WELEQ QG+ EQIIRPTGL+DPPVE+R Sbjct: 418 PSCKDNRPLKFEEWEAMRPQTVHVSATPGKWELEQTQGVFTEQIIRPTGLIDPPVEVRPV 477 Query: 563 --SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 QV+DV E+ Q+G R L+T LTK+M+EDLT+Y++E+ ++VRYMHS++ T+E Sbjct: 478 SKDGANQVDDVIAEVKNTTQRGFRSLVTTLTKKMSEDLTDYMHEQGVKVRYMHSDIDTVE 537 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FD L+GINLLREGLDIPEC V ILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 538 RIEIIRDLRLGVFDCLIGINLLREGLDIPECAFVGILDADKEGFLRSETSLVQTIGRAAR 597 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N ++VILYAD +T S++ A+ ETTRRR+ Q HN+KH I P++V + ++++ I + Sbjct: 598 NSEARVILYADKVTGSMERAMSETTRRRDIQRAHNEKHGITPKTVVRAVEDIMEDIGGKK 657 Query: 741 AATTNISIDAQQLSLSKKK---------------GKAH-----LKSLRKQMHLAADNLNF 780 A +++ + + + K GK H + SL K+M AA NL F Sbjct: 658 NAASDLVPNGRDPNKRSAKGVQESKAGVASMAPGGKGHNLAGVIASLEKEMREAAANLEF 717 Query: 781 EEAARIRDEIKRLK 794 E AAR+RDE+K+L+ Sbjct: 718 ETAARLRDEVKQLR 731 >gi|330813709|ref|YP_004357948.1| excinuclease ABC subunit B [Candidatus Pelagibacter sp. IMCC9063] gi|327486804|gb|AEA81209.1| excinuclease ABC subunit B [Candidatus Pelagibacter sp. IMCC9063] Length = 714 Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/658 (63%), Positives = 522/658 (79%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI QL +G+ + +K Q+LLGVTGSGKTFTMAK+IE + RPAI++A Sbjct: 29 FKLTSSFTPAGDQPTAIKQLREGLLTNQKDQVLLGVTGSGKTFTMAKIIEELNRPAIILA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FF NAVEYFVSYYDYY PEAYVPR+DT+IEKES+INEQIDRMRH Sbjct: 89 PNKTLAAQLYGEMKSFFNENAVEYFVSYYDYYTPEAYVPRSDTFIEKESAINEQIDRMRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL E++D I+V+SVSCIYG+GS +SYS+M + +S +++++ LV+ QYKR Sbjct: 149 SATRSLFEKDDVIIVASVSCIYGLGSPDSYSKMTFTFEKNNSYNREKIIKGLVELQYKRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG+FRV G++IEIFPSHLED AWR+S+ I + EF PLTG K ++ IKIY Sbjct: 209 DQNFYRGSFRVRGENIEIFPSHLEDRAWRISLDDEKIVSLKEFDPLTGDKTEDLNIIKIY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ANSHY+TPRPT+ A+K IK EL L + KE +LLEAQR+++R +DLEM+E TG+C Sbjct: 269 ANSHYITPRPTVQQAIKEIKAELVTTLKKFRKENKLLEAQRIDERTRFDLEMIEATGTCA 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR+PGEPPPTLFEY+P+++++FVDESHVT+PQ++GMY+GD RK TL++Y Sbjct: 329 GIENYSRFLSGRSPGEPPPTLFEYLPDNAIIFVDESHVTVPQLNGMYKGDHTRKKTLSDY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSCMDNRPL+FEEW+ +R TI VSATPG+WEL+Q +G+ EQ+IRPTGL DP + Sbjct: 389 GFRLPSCMDNRPLKFEEWDMMRSETIFVSATPGNWELDQSKGVFAEQVIRPTGLTDPDIL 448 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A+ QV+D+ E ++ R+L T LTK+MAEDLTEYL E I+VRYMHSE+ TLE Sbjct: 449 IRPAKNQVDDLLSECLKIVKKKQRVLATTLTKKMAEDLTEYLDENGIKVRYMHSEIDTLE 508 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 509 RIEIIRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAAR 568 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVILYAD TKSI+ AI+ET RRR +Q NKK+NI PQS+++ I ++++ + +D Sbjct: 569 NVEGKVILYADKETKSIKKAIEETDRRRSRQELFNKKNNITPQSIQKNIGDILESVYEKD 628 Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A NI I K HLKSL+K MH++ADNL FE+AA+IRDEIK+L++S Sbjct: 629 YLNAEKNIEIGGNL--------KKHLKSLKKDMHISADNLEFEKAAKIRDEIKKLENS 678 >gi|23428622|gb|AAM12395.1| excinuclease subunit B [Zymomonas mobilis subsp. mobilis CP4] Length = 739 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/689 (59%), Positives = 510/689 (74%), Gaps = 22/689 (3%) Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172 D P +N + PHR S ++ F++ +DY P+GDQP AI+ L K I E+ Q+ Sbjct: 10 DEP--ENHSDFVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQV 66 Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYY Sbjct: 67 LLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYY 126 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS Sbjct: 127 QPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSS 186 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 M +L G V+Q+E++ LV QYKR ++ RG+FRV GD++EIFPSH ED+AWR+S Sbjct: 187 MTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISF 246 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++IEEISEF PLTG KI ++ IKIYANSHYVTP PTL A I+ EL RL E + Sbjct: 247 FGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDNRLRESK- 305 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSI----ENYSRYLTGRNPGEPPPTLFEYIPED 468 L+ ++R + C NYSR+LTGR PGEPPPTLFEY+P++ Sbjct: 306 ----LKVNYWKRRFGKAHRIRSGNDGCNRCLFRYSNYSRFLTGRAPGEPPPTLFEYLPDN 361 Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528 +LLFVDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP + V Sbjct: 362 ALLFVDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQNVYV 421 Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588 SATPG WELEQ G+ VEQIIRPTGLVDP +E+R QV+++ E A G R L+T Sbjct: 422 SATPGPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVT 481 Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 LTKRMAEDLTEY+YE ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDI Sbjct: 482 TLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDI 541 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 PECGLVA+LDADKEGFLRS+TSLIQTIGRAARN +VILY D IT S+ A+ ET RRR Sbjct: 542 PECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRR 601 Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQLSLSKKKGKAHLK 765 KQ+ NK HNI P +VK ++ +++ + +AA T + D + L+ S + Sbjct: 602 IKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENHDPKVLARS-------IS 654 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 K+M AA NL FE+AA++RD + +LK Sbjct: 655 ETEKEMLEAAANLEFEKAAQLRDVLHQLK 683 >gi|117924009|ref|YP_864626.1| excinuclease ABC subunit B [Magnetococcus sp. MC-1] gi|117607765|gb|ABK43220.1| Excinuclease ABC subunit B [Magnetococcus sp. MC-1] Length = 675 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/665 (60%), Positives = 499/665 (75%), Gaps = 9/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L+ G+ K Q+LLGVTGSGKTFTMA +I+ ++RPA+++A Sbjct: 8 FELISDYQPCGDQPQAIEKLVAGLREGRKDQVLLGVTGSGKTFTMANIIQRLERPAVILA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTDT+IEK+SSINEQIDRMRH Sbjct: 68 HNKTLAGQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTFIEKDSSINEQIDRMRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LL R D I+V+SVSCIYG+GS ESY+ M ++L++ +EQ+E++ LV QY+R Sbjct: 128 AATRALLTRQDVIIVASVSCIYGLGSPESYAAMSLKLEVEQEIEQREIMRKLVAMQYQRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EIFP+H + A RV +FG+ I+ ISE PLTG+ + Sbjct: 188 DIDFQRGTFRVRGDTLEIFPAHEDARAIRVELFGDVIDRISEVDPLTGENFGPAPHASFF 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R T+ A++ IK ELK RL ++G LLEAQRLE R DLEM++ G C Sbjct: 248 PASHYVTQRSTIVRAVEGIKAELKERLESFNQQGYLLEAQRLENRTRQDLEMMQELGYCT 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESHVT+ Q+ MYRGD RK+TL EY Sbjct: 308 GIENYSRFLTGRQPGEPPPTLFEYLPENALLFVDESHVTVSQVRAMYRGDRSRKSTLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEEW +RP TI VSATP WELEQ QG +VEQIIRPTGL+DPPVE Sbjct: 368 GFRLPSAMDNRPLQFEEWEQMRPQTIYVSATPALWELEQAQGQVVEQIIRPTGLMDPPVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ EI G R+L T LTKRMAEDLT+YL + +I+VRY+HS++ TLE Sbjct: 428 IRPVEHQVDDLIHEIKKVIATGYRVLATTLTKRMAEDLTDYLVDLDIKVRYLHSDIDTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVL+GINLLREGLDIPE GLVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 488 RMEIIRDLRLGAFDVLIGINLLREGLDIPEVGLVAILDADKEGFLRSETSLVQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYAD T SI+ A+ ET RRR Q +N++HNI PQSV + +++ + D Sbjct: 548 NVEGRVILYADKRTGSIERALAETDRRRAIQQHYNEQHNITPQSVVRGVADLMGEMTGGD 607 Query: 741 AATTNIS------IDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + + + + + A Q + GKA +++L K+MH AA LNFE+AA RD+I Sbjct: 608 STSKSAAKGRGKQVAALQEPVVPLHGKALEKRIRALEKEMHDAASALNFEQAALFRDQII 667 Query: 792 RLKSS 796 L+ + Sbjct: 668 ALEKA 672 >gi|34580788|ref|ZP_00142268.1| excinuclease ABC subunit B [Rickettsia sibirica 246] gi|28262173|gb|EAA25677.1| excinuclease ABC subunit B [Rickettsia sibirica 246] Length = 661 Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/661 (59%), Positives = 493/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S + +LL+ L+ QY+R Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKTMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRNPGEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNPGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI QG R+L+T LT++MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTQKMAEDLTAYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I E ID Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHTLAEFEKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L + A T L + K K H+ L+K+M AA NL FE+A ++RD++K L+ Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAIKLRDQLKTLEE 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|15892189|ref|NP_359903.1| excinuclease ABC subunit B [Rickettsia conorii str. Malish 7] gi|21542287|sp|Q92J03|UVRB_RICCN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|15619321|gb|AAL02804.1| excinuclease ABC subunit B [Rickettsia conorii str. Malish 7] Length = 661 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/661 (59%), Positives = 492/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S + +LL+ L+ QY+R Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI QG R+L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I E ID Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAEFEKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L + A T L + K K H+ L+K+M AA NL FE+A ++RD++K L+ Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEE 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|239948098|ref|ZP_04699851.1| excinuclease ABC subunit B [Rickettsia endosymbiont of Ixodes scapularis] gi|239922374|gb|EER22398.1| excinuclease ABC subunit B [Rickettsia endosymbiont of Ixodes scapularis] Length = 663 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/656 (59%), Positives = 493/656 (75%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S + +LL+ L+ QY+R Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGQSYPRDKLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGKKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N+A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN G+PPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNAGKPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETDGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +G R+L+T LTK+MAEDLT YL + + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEIQTTISKGFRVLVTTLTKKMAEDLTAYLQDLKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I + + LE Sbjct: 544 NSEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAE---LEK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + A L + K KAH+ L+K M AA+NL FE+AA++RD++K L+ + Sbjct: 601 IDSKLDKKQAHTLFDNPAKLKAHIDKLKKDMLKAANNLEFEQAAKLRDQLKTLEEA 656 >gi|157828144|ref|YP_001494386.1| excinuclease ABC subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932843|ref|YP_001649632.1| excinuclease ABC subunit B [Rickettsia rickettsii str. Iowa] gi|189037994|sp|B0BWK0|UVRB_RICRO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037995|sp|A8GR53|UVRB_RICRS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157800625|gb|ABV75878.1| excinuclease ABC subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907930|gb|ABY72226.1| excinuclease ABC subunit B [Rickettsia rickettsii str. Iowa] Length = 661 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/661 (59%), Positives = 492/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S + +LL+ L+ QY+R Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMVVNLEPGQSYLRDQLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAIVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI QG R+L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I E ID Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAEFEKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L + A T L + K K H+ L+K+M AA NL FE+A ++RD++K L+ Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEE 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|67459452|ref|YP_247076.1| excinuclease ABC subunit B [Rickettsia felis URRWXCal2] gi|75536134|sp|Q4UKL6|UVRB_RICFE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|67004985|gb|AAY61911.1| Excinuclease ABC subunit B [Rickettsia felis URRWXCal2] Length = 661 Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/656 (59%), Positives = 493/656 (75%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S + +LL+ L+ QY+R Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N+A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGDTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +G R+L+T LTK+MAEDLT YL E + Y+HS + TLE Sbjct: 424 IKPATNQVEDLIGEIQATIAKGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNIHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD +TKSI A+ ET+RRR+ Q E+N+KH I P+++ I + + LE Sbjct: 544 NSEGRVILYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPKTINRAIHALAE---LEK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + A L + K KAH++ L+K M AA NL FE+AA++RD++K L+ + Sbjct: 601 VDSKLDKKQAHTLFDNPAKLKAHIEKLKKDMLKAASNLEFEQAAKLRDQLKTLEEA 656 >gi|157803395|ref|YP_001491944.1| excinuclease ABC subunit B [Rickettsia canadensis str. McKiel] gi|189037992|sp|A8EXS6|UVRB_RICCK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157784658|gb|ABV73159.1| excinuclease ABC subunit B [Rickettsia canadensis str. McKiel] Length = 661 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/661 (60%), Positives = 492/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +I M RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIARMNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K FP NA+EYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKLMFPKNAIEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVVSSVSCIYG+GS Y QM V L+ G S + +LLS LV QY+R Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPNLYYQMTVNLESGKSYPRDKLLSDLVNLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S GN++E I EF PLTG K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFVGNELEYIHEFDPLTGTKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+ EL+ RL L+ + ++LE QRL QR YDLEML TTGSC+ Sbjct: 244 GNSHFVIPQETVNKAISEIEVELQKRLELLKSQNKILETQRLNQRTQYDLEMLTTTGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGRN GEPPPTLFEY+P+D+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GIENYSRFLTGRNAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP TI VSATPG +ELE+ G++VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTIFVSATPGPFELEETGGLVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +GLR+L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEIQTTIAKGLRVLVTTLTKKMAEDLTTYLQELKYKSSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLR G ++LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RLEILRDLRQGTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD ITKSI A+ ET RRR+ Q E+N+KH I PQ++ I ++ ID Sbjct: 544 NSEGRVILYADKITKSIDKAVSETMRRRQIQQEYNEKHGIIPQTINRTIYALTALKKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L D +I D + K KAH+ L+K M AA NL FE+A ++RD++K L+ Sbjct: 604 KL--DKKQAHILFD------NPAKLKAHIYKLKKAMLKAASNLEFEQATKLRDQLKNLEE 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|229586447|ref|YP_002844948.1| excinuclease ABC subunit B [Rickettsia africae ESF-5] gi|259710331|sp|C3PMP5|UVRB_RICAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|228021497|gb|ACP53205.1| Excinuclease ABC subunit B [Rickettsia africae ESF-5] Length = 661 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/661 (59%), Positives = 492/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S + +LL+ L+ QY+R Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ E+ QG R+L+T LT++MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEMQTTIAQGFRVLVTTLTQKMAEDLTAYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I E ID Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGITPKTINRAIHALAEFEKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L + A T L + K K H+ L+K+M AA NL FE+A ++RD++K L+ Sbjct: 604 KLDKKQAHT--------LFDNAAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEE 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|238650441|ref|YP_002916293.1| excinuclease ABC subunit B [Rickettsia peacockii str. Rustic] gi|259710332|sp|C4K0Z4|UVRB_RICPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238624539|gb|ACR47245.1| excinuclease ABC subunit B [Rickettsia peacockii str. Rustic] Length = 661 Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/661 (59%), Positives = 493/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S + +LL+ L+ QY+R Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYLRDQLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGR+ GEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRHAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI QG R+L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I E ID Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAEFEKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L + A T L + K K H+ L+K+M AA NL FE+A ++RD++K L++ Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEA 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|157964268|ref|YP_001499092.1| excinuclease ABC subunit B [Rickettsia massiliae MTU5] gi|189037993|sp|A8F0V9|UVRB_RICM5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157844044|gb|ABV84545.1| Excinuclease ABC subunit B [Rickettsia massiliae MTU5] Length = 661 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/661 (59%), Positives = 490/661 (74%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQILLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S + +LL+ L+ QY+R Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+I+IFPSH + AWR+S FGN++E I EF PLTG K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSNKAWRLSFFGNELEYIHEFDPLTGAKLAKLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TG+C+ Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGNCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A Q+ED+ EI +G R+L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQIEDLISEIQTTIAKGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSHVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735 N +VILYAD +TKSI A+ ET RRR+ Q E+N KH I P+++ I E ID Sbjct: 544 NSEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNAKHGIIPKTINRTIHALAEFEKIDS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L + A T L + K K H+ L+K+M AA NL FE+AA++RD++K L+ Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAAKLRDQLKTLEE 655 Query: 796 S 796 + Sbjct: 656 A 656 >gi|157826730|ref|YP_001495794.1| excinuclease ABC subunit B [Rickettsia bellii OSU 85-389] gi|189037991|sp|A8GV86|UVRB_RICB8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157802034|gb|ABV78757.1| excinuclease ABC subunit B [Rickettsia bellii OSU 85-389] Length = 661 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/656 (59%), Positives = 489/656 (74%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P+GDQP AI +++KG++++++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISDYKPAGDQPKAIDEIIKGLNNKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+P+TD +IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIPKTDVFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S + +LL+ LV QY+R Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLVNLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD++++FPSH D AWR+S FGN++E I EF PLTG+K+ ++ IY Sbjct: 184 DIGFERGCFRVKGDNVDVFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLVKLDKAIIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ R+ L+ + +LLE QR+ QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGR GEPPPTLFEY+P+D+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATP +EL + G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +G +L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATNQVEDLVGEIQSTIAKGFCVLVTTLTKKMAEDLTNYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD +TKSI AI ET RRR Q EHN+K+ I P+++ I + + LE Sbjct: 544 NSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAE---LEK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + L + K KAH+ LRK+M AA NL FE+AA++RD++K L+ + Sbjct: 601 VDSKLDKKQTHNLFENPAKLKAHIDKLRKEMLKAASNLEFEQAAKLRDQLKTLEEA 656 >gi|91205909|ref|YP_538264.1| excinuclease ABC subunit B [Rickettsia bellii RML369-C] gi|122425348|sp|Q1RHI9|UVRB_RICBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|91069453|gb|ABE05175.1| Excinuclease ABC subunit B [Rickettsia bellii RML369-C] Length = 661 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/656 (59%), Positives = 489/656 (74%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P+GDQP AI +++KG++++++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISDYKPAGDQPKAIDEIIKGLNNKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+P+TD +IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIPKTDVFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S + +LL+ LV QY+R Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLVNLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD++++FPSH D AWR+S FGN++E I EF PLTG+K+ ++ IY Sbjct: 184 DIGFERGCFRVKGDNVDVFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLVKLDKAIIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+EEL+ R+ L+ + +LLE QR+ QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGR GEPPPTLFEY+P+D+LLFVDESHV++PQI MY GD RK L E+ Sbjct: 304 GVENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW+ RP T+ VSATP +EL + G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +G +L+T LTK+MAEDLT YL E + Y+HS + TLE Sbjct: 424 IKPATNQVEDLVGEIQSTIAKGFCVLVTTLTKKMAEDLTNYLQELKYKTSYLHSNIHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD +TKSI AI ET RRR Q EHN+K+ I P+++ I + + LE Sbjct: 544 NSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAE---LEK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + L + K KAH+ LRK+M AA NL FE+AA++RD++K L+ + Sbjct: 601 VDSKLDKKQTHNLFENPAKLKAHIDKLRKEMLKAASNLEFEQAAKLRDQLKTLEEA 656 >gi|114320247|ref|YP_741930.1| excinuclease ABC subunit B [Alkalilimnicola ehrlichii MLHE-1] gi|114226641|gb|ABI56440.1| Excinuclease ABC subunit B [Alkalilimnicola ehrlichii MLHE-1] Length = 675 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/662 (58%), Positives = 502/662 (75%), Gaps = 11/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+Q+ + P+GDQP AIA L++G+++ E+ Q LLGVTGSGKTFTMA VI+A+QRPA+V+A Sbjct: 5 FQLQSRFQPAGDQPTAIASLVEGLNAGERHQTLLGVTGSGKTFTMANVIQAVQRPAMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + FFP N VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMREFFPKNRVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D I+V+SVS IYG+G +SY M++ L G++++Q+++L L + QY R Sbjct: 125 SATKAILERQDTIIVASVSSIYGLGDPQSYMAMLLHLVRGETIDQRQILRRLAEMQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGT+R G+ I+IFP+ ED A RV +F ++IEE+S F PLTG+ +R V + IY Sbjct: 185 DMDFTRGTYRARGEVIDIFPADAEDEAVRVELFDDEIEELSHFDPLTGEVLRRVPRLTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+ IKEEL+ RL EL +L+EAQRLEQR +DLEM+ G C Sbjct: 245 PKTHYVTPRGQVLRAIDAIKEELRDRLAELRAADKLVEAQRLEQRTLFDLEMMHELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+PED+++F+DESHVTIPQ+ GMY+GD RK TL +Y Sbjct: 305 GIENYSRHLSGRAPGEPPPTLFDYVPEDAVVFIDESHVTIPQLGGMYKGDRSRKQTLVDY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW L P ++VSATPG WE E Q +VEQ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLKFEEWLRLAPQCVLVSATPGPWEHEHSQR-VVEQVVRPTGLLDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+DVY EI A++ R+L+T LTKRMAEDLTEYL+E +RVRY+HS+V T+E Sbjct: 424 VRPALSQVDDVYGEITERARRDERVLVTTLTKRMAEDLTEYLHENGVRVRYLHSDVDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RTEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736 N+ K ILY D IT S++ AIDET RRR KQ HN+ H I P+ V++ + ++++ PI Sbjct: 544 NLGGKAILYGDEITNSMRRAIDETERRRAKQQAHNEAHGITPKGVRKDVADIMERGGAPI 603 Query: 737 LLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A I A++ + + + +K L KQM A NL FEEAA++RDEIKR Sbjct: 604 --PGAPRGRIDKVAEEAAKYGRYTPAEAVKRIKQLEKQMREHARNLEFEEAAQLRDEIKR 661 Query: 793 LK 794 L+ Sbjct: 662 LE 663 >gi|157825404|ref|YP_001493124.1| excinuclease ABC subunit B [Rickettsia akari str. Hartford] gi|189037990|sp|A8GMJ1|UVRB_RICAH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157799362|gb|ABV74616.1| excinuclease ABC subunit B [Rickettsia akari str. Hartford] Length = 661 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/656 (58%), Positives = 491/656 (74%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSLISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINE ID MRH Sbjct: 64 HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEHIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVV+SVSCIYG+GS + Y QM V L+ G S + +LL+ L+ QYKR Sbjct: 124 SATRSLLERRDVIVVASVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLINLQYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RG FRV GD+I+IFPSH D AWR+S F N++E I EF PLTG+K+ ++ ++ Sbjct: 184 DMGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFSNELEYIHEFDPLTGEKLAKLDKAIVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SH+V P+ T+N A+ I+EEL+ RL L+ + +LLE QRL QR YDLEML TGSC+ Sbjct: 244 GHSHFVMPQDTVNNAISGIEEELQKRLEFLKSQNKLLETQRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ TGRN GEPPPTLFEY+P+D+LLFVDESHV++PQI MY D RK L E+ Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPKDALLFVDESHVSVPQIKAMYNSDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +GLR+L+T LTK+MAEDLT YL E + Y+HS V TLE Sbjct: 424 IKPATKQVEDLISEIQATVAKGLRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++DLR G D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD +TKSI A+ ET RRR+ Q E+N+KH I P+++ I + LE Sbjct: 544 NSEGRVILYADKMTKSIDKALSETLRRRQIQQEYNEKHGIIPKTINRAIHALAT---LER 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + A L + K KA++ L K+M AA NL FE+AA++RD++K L+++ Sbjct: 601 VDSKCDTKQAHTLFDNTAKLKANINKLNKEMLKAASNLEFEQAAKLRDQLKTLEAA 656 >gi|114777054|ref|ZP_01452074.1| excinuclease ABC subunit B [Mariprofundus ferrooxydans PV-1] gi|114552575|gb|EAU55035.1| excinuclease ABC subunit B [Mariprofundus ferrooxydans PV-1] Length = 659 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/654 (58%), Positives = 493/654 (75%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ D+ P GDQP AIA+L+KG+ + Q LLGVTGSGKT+TMA VIE Q+P ++MA Sbjct: 3 FKLAGDFTPRGDQPQAIAELVKGVGEGARHQTLLGVTGSGKTYTMACVIERTQKPTLIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+INEQIDRMRH Sbjct: 63 PNKTLAAQLYGEFKQFFPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINEQIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LLER D I+VSSVSCIYG+GS E+Y++M++ +++G +Q+ ++ LV+ QY+R Sbjct: 123 AATRALLEREDVIIVSSVSCIYGLGSPEAYAEMLLYVEVGRETDQRAAVNKLVELQYQRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR+ GD +E+FP+H ED A R+ FG+D++ IS F PLTG++I ++ I+ Sbjct: 183 DMDFHRGTFRLRGDVLEVFPAHAEDFAVRIEFFGDDVDAISRFDPLTGRRIESLHKYTIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VTPR L AM+ I+ EL RL EL +L+EAQRLEQR +DLEM++ G C Sbjct: 243 PKSHFVTPREHLLRAMEAIRNELAERLAELHDNNKLVEAQRLEQRTVFDLEMIQEVGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+LTGR PGE PPTL +Y+P ++L+ +DESHVT+PQI GM++GD RK TL ++ Sbjct: 303 GVENYSRHLTGRQPGEAPPTLLDYLPNNALVMLDESHVTVPQIGGMFKGDRSRKTTLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + P I VSATPG +E+EQC G+IVEQ+IRPTGLVDP VE Sbjct: 363 GFRLPSALDNRPLQFPEFEAIVPQAIYVSATPGPYEMEQCGGVIVEQVIRPTGLVDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D + G R+L T LTKRMAEDLTEYL +RVRY+HS++ T+E Sbjct: 423 VRPAGTQVDDFVSAATPVIETGFRVLATCLTKRMAEDLTEYLNNLGMRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAI DADKEGFLRS+ SL QTIGRAAR Sbjct: 483 RMEILRDLRLGVFDVLVGINLLREGLDLPEVALVAIFDADKEGFLRSERSLTQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ +VILYAD IT S+Q A+DET RRR +QL +N +H I PQ+VK +I +++ + D Sbjct: 543 NIEGRVILYADKITNSMQRAMDETRRRRVRQLAYNAEHGITPQTVKSEIKDILGSVYEMD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +I A+ ++ + + + L + M AA +L FE+AAR RDE +LK Sbjct: 603 YA--HIPEVAEPEPMTSAQKQQRMSELERLMAEAAADLRFEDAARYRDERIQLK 654 >gi|15604076|ref|NP_220591.1| excinuclease ABC subunit B [Rickettsia prowazekii str. Madrid E] gi|6226296|sp|Q9ZDW2|UVRB_RICPR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|3860767|emb|CAA14668.1| EXCINUCLEASE ABC SUBUNIT B (uvrB) [Rickettsia prowazekii] gi|292571799|gb|ADE29714.1| Excinuclease ABC subunit B [Rickettsia prowazekii Rp22] Length = 662 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/661 (58%), Positives = 494/661 (74%), Gaps = 12/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISGYKPAGDQPKAIDEIITGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+Y E K+ FP NAVEYFVSYYDYYQPE+Y+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPESYIVRTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IV+SSVSCIYG+G+ + Y QM V L+ G + + +LL+ L+ QYKR Sbjct: 124 SATRSLLERRDVIVISSVSCIYGLGAPDLYYQMTVHLEPGQNYPRDKLLNDLINLQYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD+++IFPSH D AWR+S FG+++E I EF PLTG+K+ ++ I+ Sbjct: 184 DIGFERGCFRVKGDNMDIFPSHYSDKAWRLSFFGDELEYIHEFDPLTGEKLTQLDKAMIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V PR +N A+ I+ EL+ RL L+ + +L+EA+RL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPRERINHAISSIEVELQKRLEFLKSQDKLIEAKRLNQRTLYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TGRN G+PPPTLFEY+PED+LLF+DESHV++PQI MY D RK L E+ Sbjct: 304 GIENYSRFFTGRNAGQPPPTLFEYLPEDALLFIDESHVSVPQIRAMYNSDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGQFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI GLRIL+T LTK+MAEDLT YL + + Y+HS + TLE Sbjct: 424 IKPATNQVEDLISEIQTTINTGLRILVTTLTKKMAEDLTSYLQDLQYKTYYLHSNIHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+R+LR G D+LVGINLLREG+DIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 484 RIEILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILL 738 N KVILYAD +TKSI A+ ET RRR+ Q E+NKKH I P+++ I +E ++ I Sbjct: 544 NSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKHGIIPKTINRAIHALESLEEI-- 601 Query: 739 EDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +D +Q L + K KAH+ L+K+M AA NL FE+AA++R+++K L+ Sbjct: 602 -----HDNKLDKKQANALLNNPAKLKAHMDKLKKEMFKAASNLEFEQAAKLRNQLKALEE 656 Query: 796 S 796 + Sbjct: 657 A 657 >gi|51473402|ref|YP_067159.1| excinuclease ABC subunit B [Rickettsia typhi str. Wilmington] gi|81826331|sp|Q68XG5|UVRB_RICTY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|51459714|gb|AAU03677.1| excinuclease ABC subunit B [Rickettsia typhi str. Wilmington] Length = 662 Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/662 (58%), Positives = 492/662 (74%), Gaps = 14/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+G QP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE RP ++MA Sbjct: 4 FSIISAYKPAGGQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQ+Y E K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH Sbjct: 64 HNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPEAYIVRTDTFIEKDSSINEQIDLMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IV++SVSCIYG+G+ + Y QM V L++G S + +LL+ L+ QYKR Sbjct: 124 SATRSLLERRDVIVIASVSCIYGLGAPDLYYQMTVHLELGQSYPRDKLLNDLINLQYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD I+IFPSH D AWR+S FGN++E I EF PLTG+K+ ++ ++ Sbjct: 184 DIGFERGCFRVKGDHIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLTQLDKAMVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+V P+ T+N A+ I+ EL+ L L+ + +L+EA+RL QR YDLEML TGSC+ Sbjct: 244 GNSHFVMPQKTINNAISSIEVELQKHLDVLKSQDKLIEAKRLNQRTQYDLEMLTETGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TGRN GEPPPTLFEY+P+D+LLF+DESHV+IPQI MY D RK L E+ Sbjct: 304 GIENYSRFFTGRNAGEPPPTLFEYLPKDALLFLDESHVSIPQIRAMYNSDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A QVED+ EI +GLRIL+T LTK+MAEDLT YL + + Y+HS + TLE Sbjct: 424 IKPATNQVEDLISEIQTTITKGLRILVTTLTKKMAEDLTSYLQDLQYKTYYLHSNIHTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR G D+LVGINLLREG+DIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------EKIMEVID 734 N KVILYAD +TKSI A+ ET RRR+ Q E+NKK+ I P+++ E + E+ D Sbjct: 544 NSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKYGIIPKTINSAIHTLESLEEIHD 603 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L D TN ++ + K K+++ L+K+M AA NL FE+AA++R+++K L+ Sbjct: 604 NKL--DKKQTNTLLN------NPAKLKSYMDKLKKEMFKAASNLEFEQAAKLRNQLKTLE 655 Query: 795 SS 796 + Sbjct: 656 KA 657 >gi|42523763|ref|NP_969143.1| excinuclease ABC subunit B [Bdellovibrio bacteriovorus HD100] gi|39575970|emb|CAE80136.1| excinuclease ABC subunit B [Bdellovibrio bacteriovorus HD100] Length = 745 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/659 (58%), Positives = 493/659 (74%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ PSGDQP AI Q+ + ++ K Q LLGVTGSGKTFTMA I + +PA+V+A Sbjct: 63 FQLVSEFKPSGDQPKAIEQIAENFNAGLKHQTLLGVTGSGKTFTMAHTIANLNQPALVLA 122 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EFK FPHNAVEYFVSYYDYYQPEAY+P TDTYIEK+S+INEQIDRMRH Sbjct: 123 PNKTLAAQLYAEFKELFPHNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINEQIDRMRH 182 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL +R D I+VSSVSCIYG+GS E+Y M++Q+ S+++ LL L++ QY+R Sbjct: 183 SATRSLFDRRDVIIVSSVSCIYGLGSPEAYEGMMIQIVSNTSMKRDHLLRELIRIQYQRN 242 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT RV GD++EIFP + E+ A RV FG+ IE +S PLTGQ + ++ I IY Sbjct: 243 NVDFSRGTVRVRGDNVEIFPPYEEERAVRVEFFGDYIERLSWIDPLTGQILEELDQIGIY 302 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT +L A+K I++EL+ RL++L +E +LLEAQRLEQR YD+EM+E G CQ Sbjct: 303 PGSHHVTSDDSLKRAIKTIQDELRDRLVQLNQEMKLLEAQRLEQRTYYDIEMMEQMGFCQ 362 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR PGEPPPTL EY P+D + F+DESHVT+PQI GMYRGD RK L E+ Sbjct: 363 GIENYSRHMTGRGPGEPPPTLLEYFPKDFVTFIDESHVTVPQIGGMYRGDRARKMNLVEH 422 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + + VSATPG++EL++ +G+IVEQIIRPTGL+DP VE Sbjct: 423 GFRLPSALDNRPLNFQEFEAMMDKVVYVSATPGTYELQKSEGVIVEQIIRPTGLIDPIVE 482 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI + + R+L+T LTKR AEDLTEY I+V+Y+HSE+ T+E Sbjct: 483 VRPVKHQVDDLLKEIRIRVSKQERVLITTLTKRSAEDLTEYYENLGIKVKYLHSEIDTME 542 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LV I DADKEGFLRS+ SL+QTIGRAAR Sbjct: 543 RMEILRDLRLGVFDVLVGINLLREGLDIPEVSLVGITDADKEGFLRSERSLVQTIGRAAR 602 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM----EVIDPI 736 N+N +VILY DT+T+S++ AI+ET RRR Q E+N+ H I PQSVK++I E+ D Sbjct: 603 NLNGRVILYGDTVTESMEKAINETERRRRIQSEYNEAHGITPQSVKKRIRDGLGEMFDGT 662 Query: 737 LLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N S Q+ + +K + + LR +M + NL FEEAA+IRDEIKRL+ Sbjct: 663 VSTPLGGENKSAAIMQKFAQQPEKIQQEITKLRARMKELSANLEFEEAAKIRDEIKRLQ 721 >gi|291286762|ref|YP_003503578.1| excinuclease ABC, B subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883922|gb|ADD67622.1| excinuclease ABC, B subunit [Denitrovibrio acetiphilus DSM 12809] Length = 658 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/648 (57%), Positives = 496/648 (76%), Gaps = 2/648 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QL+ S E Q+LLGVTGSGKT+TMA V++ + P +V+A Sbjct: 3 FELVSDYQPAGDQPEAIRQLVANYQSGENAQVLLGVTGSGKTYTMANVVQQLNVPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY P+TDT+IEK+SSINE ID++RH Sbjct: 63 HNKTLAAQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYKPQTDTFIEKDSSINEDIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D ++V+SVSCIYG+GS E+Y M+V L++ + VE + +L LV+ QY+R Sbjct: 123 SATRSLLERRDVLIVASVSCIYGLGSPEAYHGMLVHLEVNEDVEMETVLKKLVEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGT+RV GD++E+FP+H +D+A+R+ +G++++ ISEF PLTG+ I+ + IY Sbjct: 183 EYDFHRGTYRVKGDTLEVFPAHEDDLAYRIEFYGDEVDRISEFDPLTGKTIKERPKVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 N+HYVT T+ A+ IK EL R E E + +LLEAQRL QR +D+EM+ TG C Sbjct: 243 PNTHYVTTSTTIEDAVSIIKRELAQRCTEFENQNKLLEAQRLTQRTMFDIEMMLETGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR L R PG+ PPTL Y+P+D+L+ VDESH+TIPQI GMY GD RK TL EY Sbjct: 303 GVENYSRILENRQPGDTPPTLLSYLPKDALVIVDESHMTIPQIKGMYNGDRSRKTTLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL+FEE+ + VSATP +EL++ G++ EQIIRPTGL+DPP+E Sbjct: 363 GFRLPAALDNRPLKFEEFRERVNRIMYVSATPDDFELKESMGLLAEQIIRPTGLMDPPIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +R QV+D+Y+EI A++G R+L+T LTKRM+E+LT+Y + +R++Y+HSE+ TLE Sbjct: 423 VRPSRNQVDDLYNEIRKTAEKGERVLVTTLTKRMSEELTKYYDDMGVRIKYLHSEIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI I++ LRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RIRILKQLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSEKSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN + I YA+ IT+S+Q A+DET RRREKQL +NK+H I PQ++K +I +++ I +D Sbjct: 543 NVNGRAIFYAEKITRSMQSALDETKRRREKQLLYNKEHGITPQTIKNEISNILESIYEKD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 T +I+ D ++LS ++ +A +++L+K M A NL FE+AAR+RD Sbjct: 603 YVTVDINDDI-GITLSGRR-EADIEALKKLMQEHAQNLEFEKAARVRD 648 >gi|291279064|ref|YP_003495899.1| excinuclease ABC subunit B [Deferribacter desulfuricans SSM1] gi|290753766|dbj|BAI80143.1| excinuclease ABC, B subunit [Deferribacter desulfuricans SSM1] Length = 661 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/658 (57%), Positives = 494/658 (75%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY GDQP AI ++++ Q+LLGVTGSGKTFTMA VI+ + P ++++ Sbjct: 3 FILKSDYKAEGDQPKAIKEIVENFKKGINKQVLLGVTGSGKTFTMANVIKELNVPTLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFKNFFP NAVEYFVSYYDYYQPEAY+P +D YIEK+SSINE IDRMRH Sbjct: 63 HNKTLAAQLFGEFKNFFPDNAVEYFVSYYDYYQPEAYLPASDVYIEKDSSINEHIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D ++V+SVSCIYG+GS E+Y +V L++GD VE + +LS L++ QY+R Sbjct: 123 SATRSLLERRDVVIVASVSCIYGLGSPEAYYGKLVSLEVGDEVEIESVLSKLIEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR+ GD +E+FPSH + VA+R+ FG++++ ISEF P+TG+ IRN I IY Sbjct: 183 DYDFHRGTFRLKGDILEVFPSHEDSVAYRIEFFGDEVDAISEFDPVTGKTIRNRAKIAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 N+HYVT + A+K IK +L R+ E EG+L+EAQRL+QR+ +D+EML+ TG C+ Sbjct: 243 PNTHYVTANVPMEEAIKQIKMDLIKRVEYFESEGKLIEAQRLQQRVMHDIEMLKETGHCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR GE PPTL Y+PED+L+ +DESH+TIPQI GMY GD RK L EY Sbjct: 303 GIENYSRYFEGRESGETPPTLLNYLPEDALIIIDESHITIPQIKGMYHGDRSRKMNLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL FEE+ + VSATPG +E+ G+I+EQI+RPTGL+DP +E Sbjct: 363 GFRLPAALDNRPLTFEEFYEKAKRILYVSATPGDFEINDSDGVIIEQIVRPTGLIDPKIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A+TQV+D+Y EI ++ R+++T LTKRMAEDLT Y E IRV Y+HSE+ TLE Sbjct: 423 VRPAKTQVDDLYKEILNTTKRNERVMVTTLTKRMAEDLTSYYKELGIRVEYLHSEIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+IIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS +LIQT+GRAAR Sbjct: 483 RIKIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSDKALIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN + I YAD +T S++ AI+ET RRR+ Q E+NKKHNI P+++K KI +++ I +D Sbjct: 543 NVNGRAIFYADKMTDSMKRAIEETERRRKIQEEYNKKHNITPETIKSKINNILETIYEKD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRLKS 795 T +I D L+L+ + K ++++ K M+ AA++ +FE+AA++RD E K +KS Sbjct: 603 YYTVDID-DELGLNLTGNR-KKDIETIEKAMYKAAEDYDFEKAAKLRDLLFEYKGVKS 658 >gi|289208421|ref|YP_003460487.1| excinuclease ABC subunit B [Thioalkalivibrio sp. K90mix] gi|288944052|gb|ADC71751.1| excinuclease ABC, B subunit [Thioalkalivibrio sp. K90mix] Length = 677 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/660 (57%), Positives = 492/660 (74%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI L GI + Q+LLGVTGSGKTFT+A V+E +QRP I++A Sbjct: 9 FKVVSQYQPAGDQPAAIRALTDGIEAGLAHQVLLGVTGSGKTFTIANVVENLQRPTIILA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR Sbjct: 69 PNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G Y M++ L+ GD ++Q++LL L + QY R Sbjct: 129 SATRALLERRDAIIVASVSAIYGLGDPRKYLSMVLHLQRGDRIDQRDLLRRLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + R T+RV G+ I+I P+ E A R+ +F ++IE +S F PLTG+++R V + IY Sbjct: 189 DTELRRATYRVRGEVIDIHPAESEIEAVRIELFDDEIERLSYFDPLTGEQLRTVPRLTIY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR TL A+ I++ELK RL L KE RL+EAQRLEQR +DLEM+ G C Sbjct: 249 PKTHYVTPRETLLGAVDQIRDELKERLDFLRKEDRLVEAQRLEQRTLFDLEMILEIGYCN 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPT F+Y+P+D+LL VDESHV++PQ+ GMY+GD RK TL EY Sbjct: 309 GIENYSRYLSGRAPGEPPPTFFDYLPKDALLVVDESHVSVPQVGGMYKGDRSRKETLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L+P TI VSATPG +E E G IV+Q++RPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLRFEEFEALQPQTIYVSATPGPYEREHA-GAIVDQVVRPTGLLDPILE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+D E+ ++ R+L+T LTKRMAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPAGSQVDDCLSEVRDRVERDERVLITTLTKRMAEDLTDYLSEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAI DADKEGFLRS SLIQTIGRAAR Sbjct: 488 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735 NVN K ILYAD +T S+Q AIDET RRREKQ+ HN+ H I PQ +++ + ++++ P Sbjct: 548 NVNGKAILYADKVTGSMQRAIDETERRREKQIAHNEAHGITPQGIRKNVADILEARNATP 607 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ +A + ++ ++ L ++M A +L FEEAARIRD I++LK+ Sbjct: 608 GSGRRRGQKKVAEEAPDYIDAPEQAAKEIEKLEQEMFQKARDLEFEEAARIRDRIEKLKA 667 >gi|192360924|ref|YP_001982886.1| excinuclease ABC subunit B [Cellvibrio japonicus Ueda107] gi|190687089|gb|ACE84767.1| excinuclease ABC, B subunit [Cellvibrio japonicus Ueda107] Length = 675 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/665 (56%), Positives = 500/665 (75%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQP+AIA L+ GI + Q LLGVTGSGKTFT+A VI +QRP ++MA Sbjct: 10 FVVHSEFAPAGDQPSAIAGLVAGIEAGLAHQTLLGVTGSGKTFTIANVIARVQRPTLIMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR Sbjct: 70 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D I+V++VS IYG+G +SY +M++ + GD ++Q+++L L + QY R Sbjct: 130 SATKALMERKDAIIVATVSAIYGLGDPDSYMKMLLHIVRGDRIDQRQILRRLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R T+RV G+ I+I+P+ + A RV +F +++E+IS F PLTG+ + V IY Sbjct: 190 DMDFSRATYRVRGEVIDIYPADSDMEAVRVELFDDEVEQISVFDPLTGEVLHKVPRYTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A+ IKEEL+ RL L + +L+EAQRLEQR YDLEM+ G C Sbjct: 250 PKTHYVTPRETVLEAIDNIKEELRERLAYLRENNKLVEAQRLEQRTRYDLEMMHELGYCN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GEPPPTLF+Y+P D+LL +DESHVT+PQI MY+GD RK TL EY Sbjct: 310 GIENYSRFLSGRTSGEPPPTLFDYLPADALLVIDESHVTVPQIGAMYKGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P I VSATPG +E ++ QG +VEQ++RPTGLVDP +E Sbjct: 370 GFRLPSALDNRPMRFDEWERIAPQMIFVSATPGKYE-DEHQGQVVEQVVRPTGLVDPQIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV EI L A++ R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+E Sbjct: 429 VRPAGTQVDDVLSEIRLRAEKNERVLVTTLTKRMAEDLTEYLAEHGVRVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD +T S++ AIDET RRR+KQ++HN+K I PQ ++++I ++++ + Sbjct: 549 NVNGKAILYADNMTGSMKRAIDETERRRQKQIDHNRKQGITPQGIRKQIADILEGAQVPG 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-----------LRKQMHLAADNLNFEEAARIRDE 789 A S + +++++K+GK ++ L KQM AA +L FE AA++RDE Sbjct: 609 AGGR--SARNKAMAIAEKQGKYKVEVNPKDIWKTIELLEKQMFQAAKDLEFEVAAKLRDE 666 Query: 790 IKRLK 794 I++LK Sbjct: 667 IEKLK 671 >gi|254282159|ref|ZP_04957127.1| excinuclease ABC, B subunit [gamma proteobacterium NOR51-B] gi|219678362|gb|EED34711.1| excinuclease ABC, B subunit [gamma proteobacterium NOR51-B] Length = 673 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/668 (56%), Positives = 500/668 (74%), Gaps = 11/668 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++++Y P+GDQP AI +L+ GI+S Q+LLGVTGSGKTFTMA V++ +QRP IVMA Sbjct: 5 FEVKSNYQPAGDQPFAIQKLVDGINSGLAEQVLLGVTGSGKTFTMANVVQQLQRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++ +N+ I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAQVNDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER DC+VVS+VS IYG+G ESY +M++ L G+ ++Q+ +L L + QY R Sbjct: 125 SATKALIEREDCLVVSTVSSIYGLGDPESYFKMVMHLSRGEIIDQRGILRQLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV GD I++FP+ +++A R+ +F +IE ++ F PLTG + + I I+ Sbjct: 185 DIDFKRGTYRVRGDVIDVFPADSDELAIRIELFDEEIENLTTFDPLTGVIVEKLPRITIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV R T+ A+ I+EEL+ R+ +L++ +LLEAQR++QR YD+EM+ G CQ Sbjct: 245 PKTHYVASRDTMLGAIDLIEEELEGRVKQLKEADKLLEAQRIQQRTRYDIEMIRELGYCQ 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLFEY+P+++L+ VDESHVT+PQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFEYLPDNALIMVDESHVTVPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW LRP I VSATPG++E E+ G VEQ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEALRPQAIYVSATPGAYETERS-GQTVEQVVRPTGLVDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ARTQV+D+ EI+ G R+L+T LTKRMAEDLTEYL E +IRVRY+HS++ T+E Sbjct: 424 VRPARTQVDDLLGEIHTTVAAGSRVLVTTLTKRMAEDLTEYLSEHDIRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RVEIIQDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 +++ + ILY D +T S++ AI ET RRR KQ+E N +H I P+ +++ + ++++ Sbjct: 544 HIDGRAILYGDRMTGSMERAIAETERRRVKQVEFNTEHGITPKGIEKSVQDILEGARRMP 603 Query: 735 --PILLED--AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 P D A + A+ ++LS K L+S+ QM A NL FE+AA++RD++ Sbjct: 604 TKPRSARDRKVAEERAAYTAEVVNLSPKALARKLESMEAQMLEHAKNLEFEQAAQLRDQL 663 Query: 791 KRLKSSPY 798 +K + Sbjct: 664 TEIKQQAF 671 >gi|220934929|ref|YP_002513828.1| excinuclease ABC subunit B [Thioalkalivibrio sp. HL-EbGR7] gi|219996239|gb|ACL72841.1| excinuclease ABC subunit B [Thioalkalivibrio sp. HL-EbGR7] Length = 674 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/661 (57%), Positives = 491/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++T Y P+GDQPAAI +L++G+ Q+LLGVTGSGKTFT+A VI+ QRP I++A Sbjct: 5 FTLKTGYTPAGDQPAAIEKLVEGLEDGLAHQVLLGVTGSGKTFTIANVIQRTQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G V +Y QM++ LK GD V+Q+++L L + QY R Sbjct: 125 SATRALLERRDAIIVASVSAIYGLGDVNAYMQMVLHLKRGDRVDQRDILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGT+RV G+ I+I P+ E A R+ +F ++IE++S F PLTG+ ++ V + +Y Sbjct: 185 DMELRRGTYRVRGEVIDIHPAESEREAVRIELFDDEIEQLSYFDPLTGEILKRVARLTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A++ IK EL+ RL +L +L+EAQRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPRETILGAVEQIKVELRERLEQLRSVEKLVEAQRLEQRTIFDIEMMLEVGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPP F+Y+P+D+LL VDESHVT+PQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRKPGEPPPCFFDYLPKDALLVVDESHVTVPQLGGMYRGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P I VSATPG +ELE G +VEQ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLRFEEFEALSPQAIYVSATPGPYELEHA-GQVVEQVVRPTGLVDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+E Sbjct: 424 VRPATHQVDDVLSEIRARVAVNQRVLITTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ K ILYAD IT S+ A++ET RRREKQ+ HN +H I P+SV+++I ++++ Sbjct: 544 NVHGKAILYADRITGSMARAMEETERRREKQIAHNLEHGITPRSVEKRIADIMEGAYAGG 603 Query: 741 AATT-----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++ + L +K + L QM+ A NL FEEAA +RD I+ L+ Sbjct: 604 SMASPKRFAKVAEEEIAYGLPPEKAVKEIARLESQMYEHARNLEFEEAALLRDRIEHLRK 663 Query: 796 S 796 Sbjct: 664 G 664 >gi|92113956|ref|YP_573884.1| excinuclease ABC subunit B [Chromohalobacter salexigens DSM 3043] gi|91797046|gb|ABE59185.1| Excinuclease ABC subunit B [Chromohalobacter salexigens DSM 3043] Length = 676 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/672 (57%), Positives = 487/672 (72%), Gaps = 23/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ Y P+GDQPAAI L+KG ++ Q LLGVTGSGKTFTMA V+E +QRP IVMA Sbjct: 5 FRIQSQYRPAGDQPAAIDGLIKGFNAGLAHQTLLGVTGSGKTFTMANVVERLQRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V SVS IYG+G + Y +M + G+ ++Q+ L L + QY R Sbjct: 125 SATKALLERRDALIVVSVSAIYGLGDPDQYLKMRLHFNRGELIDQRTFLRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGT+RV GD I+IFP+ ED A RV +F ++IE IS F PLTG+ V + IY Sbjct: 185 DMDFRRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIETISLFDPLTGEVRDKVPRMTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IK EL RL + + +L+EAQRLEQR YD+EM+ G C Sbjct: 245 PKSHYVTPRETILAAVEDIKVELADRLAWMRQHDKLVEAQRLEQRTLYDIEMMLELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPT F+Y+P+D+LLF+DESHV++PQ+ GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGREPGEAPPTFFDYLPDDTLLFIDESHVSVPQVGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + P T VSATPG +E E G +VEQ++RPTGLVDP +E Sbjct: 365 GFRLPSALDNRPMKFEEWERICPQTAFVSATPGPYEAEHA-GQVVEQVVRPTGLVDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A+TQV+D+ EI L G R+L+T LTKRMAEDLTEYL E +IRVRY+HS++ T+E Sbjct: 424 VRPAQTQVDDLLSEIKLRTDVGERVLVTTLTKRMAEDLTEYLDEHDIRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + K ILY D +T S+Q AIDET RRR KQ+ N++H I P +V + + ++ +E Sbjct: 544 NAHGKAILYGDRVTNSMQRAIDETERRRNKQIAFNEEHGITPTTVTKSVADI-----MEG 598 Query: 741 AATTNISI----------------DAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEA 783 A T + ++QL+ G + L MH AA NL FEEA Sbjct: 599 AQTPGKKVGRKRPDKRVAEAPGDYSSEQLNQMDAAGLTREIGKLEDAMHEAAQNLEFEEA 658 Query: 784 ARIRDEIKRLKS 795 AR+RD+++ LK+ Sbjct: 659 ARLRDQLQSLKA 670 >gi|313672630|ref|YP_004050741.1| excinuclease abc subunit b [Calditerrivibrio nitroreducens DSM 19672] gi|312939386|gb|ADR18578.1| Excinuclease ABC subunit B [Calditerrivibrio nitroreducens DSM 19672] Length = 655 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/656 (55%), Positives = 496/656 (75%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI Q+++ S Q+LLGVTGSGKTFTMA VI+ + P +++A Sbjct: 3 FKLVSNYTPQGDQPEAIRQIVENFRSGIDRQVLLGVTGSGKTFTMANVIQELNVPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN+ ID+MRH Sbjct: 63 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDDIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D I+++SVSCIYG+GS E+Y M+V +++G+ E+L+ LV+ +Y+R Sbjct: 123 SATRSLLERRDVIIIASVSCIYGLGSPEAYYGMLVSVEVGEERVIDEILAKLVEIKYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RGTFRV GD IE+FPSH D+A+R+ FG++I+ ISEF P+TG+ + + IY Sbjct: 183 EIDFHRGTFRVKGDVIEVFPSHESDLAYRIEFFGDEIDRISEFDPITGKTLYTRNKVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 N+HYVT + T+ A+K I+ +LK +++ E++ +LLEAQRL+QR+ +DLEM++ TG C Sbjct: 243 PNTHYVTTKVTIEQAIKEIERDLKNSVVKFEQQQKLLEAQRLQQRVMFDLEMIKETGYCT 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PG PPPTL Y+P+D+L+ +DESH+T+PQI GMY GD RK TL EY Sbjct: 303 GIENYSRYFDGRLPGTPPPTLMSYLPKDALVIIDESHITVPQIRGMYNGDRSRKMTLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL+FEE+N + + VSATP +ELE +G++VEQIIRPTGL+DP VE Sbjct: 363 GFRLPAALDNRPLKFEEFNQIAKKILYVSATPSEYELEDSKGVVVEQIIRPTGLMDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A+ QV+D+ E +G R+L+T LTKRMAEDLT Y+ + V Y+HS++ TL+ Sbjct: 423 IRPAKNQVDDLIGEAYKVISRGERVLVTTLTKRMAEDLTRYMKDLGFSVEYLHSDIDTLD 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGK D+L+GINLLREGLD+PE LVA+L+ADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVKILRDLRLGKIDILIGINLLREGLDLPEVSLVAVLNADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I YAD IT+SI+ A++ET RRR+KQL++N++H I P+++K +I +++ I +D Sbjct: 543 NVNGKAIFYADRITESIKKAVEETARRRKKQLQYNQEHGITPETIKSEIKNILESIYEKD 602 Query: 741 AATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D ++ + S + + L K+M+ AA++LNFE+AARIRD I K+ Sbjct: 603 Y----FEYDIEEFGIKSDGNIEKQIAELEKEMYKAAESLNFEKAARIRDIILEYKA 654 >gi|94499201|ref|ZP_01305739.1| excinuclease ABC subunit B [Oceanobacter sp. RED65] gi|94428833|gb|EAT13805.1| excinuclease ABC subunit B [Oceanobacter sp. RED65] Length = 676 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/665 (56%), Positives = 484/665 (72%), Gaps = 12/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI QL+ G+ S Q LLGVTGSGKTFTMA VI QRP IV+A Sbjct: 6 FEVKSKYQPAGDQPKAIEQLMDGLESGLARQTLLGVTGSGKTFTMANVIAKAQRPTIVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 66 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER DCI+V++VS IYG+G SY +M++ L GD ++Q+ +L L + QY R Sbjct: 126 SATKALMERRDCIIVATVSSIYGLGDPSSYLKMVLHLDRGDIIDQRGVLRRLAELQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R T+RV GD I+IFP+ ED A RV +F +IEE+S F PLTG+ +R V I I+ Sbjct: 186 DMDFHRATYRVRGDVIDIFPAESEDEAVRVELFDEEIEELSIFDPLTGEILRKVPRITIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL + +K ELK RL +L+ +L+EAQRLEQR YDLEM++ G C Sbjct: 246 PKSHYVTPRETLVDMIDEVKAELKERLTQLKDNNKLVEAQRLEQRTQYDLEMIQQLGYCT 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPTLF+Y+P+D+L+F+DESHVTIPQ MY+GD RK TL E+ Sbjct: 306 GIENYSRYLSGRPQGAAPPTLFDYLPDDALMFIDESHVTIPQFGAMYKGDRSRKETLVEF 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++F+EW + P TI VSATPG +E E Q +VEQ++RPTGLVDP VE Sbjct: 366 GFRLPSALDNRPMKFDEWEAISPQTIFVSATPGKYEAE-YQDAVVEQVVRPTGLVDPIVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D EI ++G RIL+TV+TKRMAEDLT++L+E ++RVRY+HS++ T+E Sbjct: 425 VRPATTQVDDALGEIRNRVEKGERILITVMTKRMAEDLTDFLFEHDVRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAI DADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 NV K ILYA+ IT S++ A++ET RRREKQ+ N++H I PQ +K+ + ++++ + Sbjct: 545 NVEGKAILYAERITDSMKRAMEETKRRREKQIAFNEEHGITPQGIKKSVEDILEGAVTPG 604 Query: 739 ---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + A A L+ + + M AA +L FEEAAR+RDE Sbjct: 605 KKIGHGRNRKKVAEKGAGYTADMEHLNVNDLNKRITQVEDAMFKAAKDLKFEEAARLRDE 664 Query: 790 IKRLK 794 + LK Sbjct: 665 LHELK 669 >gi|297171124|gb|ADI22135.1| helicase subunit of the DNA excision repair complex [uncultured myxobacterium HF0200_19H16] Length = 668 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/654 (57%), Positives = 488/654 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P GDQP AI +L+ G Q LLGVTGSGKTFT+A VI+ +Q P +++A Sbjct: 8 FQLTSLFEPQGDQPQAILELVNGYRQGNTNQTLLGVTGSGKTFTVANVIQKLQVPTLLIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP TDTYI+K+S+IN+ IDRMRH Sbjct: 68 HNKTLAAQLYEEFKQLFPLNAVEYFVSYYDYYQPEAYVPSTDTYIDKDSTINDAIDRMRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLERND I+VSSVSCIYG+GS E+Y M+V L++G V++ +L LV+ QY R Sbjct: 128 SATRTLLERNDVIIVSSVSCIYGLGSAEAYYDMLVFLQVGTIVDRDHILKKLVEIQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP H + A R+ FG++I+ I PL G+++ ++ + IY Sbjct: 188 DIDFHRGTFRVRGDVLEIFPVHQDSQALRIEWFGDEIDSIKNIDPLRGKELAGLDKVAIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL+ RL L +L++AQRLEQR +DLEM+E G C Sbjct: 248 PATHYVVTPESKVRALDSIREELQKRLQTLRDTNQLVQAQRLEQRTLFDLEMIEEMGYCT 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG PPPTL +Y P++ LL +DESH T+PQI MYRGD RK TL +Y Sbjct: 308 GIENYSRHLTGRPPGHPPPTLMDYFPQNYLLVIDESHQTVPQIGAMYRGDRSRKTTLVDY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E++ LR ++ +SATPG +ELEQCQG+IVEQ+IRPTGLVDPP+E Sbjct: 368 GFRLPSALDNRPLRFDEFDKLREKSLYISATPGEYELEQCQGVIVEQVIRPTGLVDPPIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+D+ +EI + + R+L+T LTKRMAEDLTE+ + +I VRY+HS++ TL+ Sbjct: 428 VRPAISQVDDLLEEIRITIAKQQRVLVTTLTKRMAEDLTEFFADASIEVRYLHSDIDTLD 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 488 RIELLRGLRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTVGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD ITKS+Q AI+ET RRREKQL+HNK+H I P+++++ I E+ L E Sbjct: 548 NVDGRVIMYADKITKSMQNAIEETDRRREKQLDHNKEHGIIPRTIQKPIPELNATALYER 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T D + +++ + +R +MH AA+ L FE AA++RD+IK L+ Sbjct: 608 DIDTMDQEDLAKKTINPALIPEKVTKMRAKMHEAAEALEFELAAQLRDQIKALE 661 >gi|325982186|ref|YP_004294588.1| UvrABC system protein B [Nitrosomonas sp. AL212] gi|325531705|gb|ADZ26426.1| UvrABC system protein B [Nitrosomonas sp. AL212] Length = 676 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/658 (56%), Positives = 498/658 (75%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQPAAIAQL++GI+ Q LLGVTGSGKT+T+A +I RPAI++A Sbjct: 10 FKLHQAFAPAGDQPAAIAQLIEGINDGLAFQTLLGVTGSGKTYTIANMIAHSGRPAILIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NA+EYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 70 PNKTLAAQLYAEMREFFPENAIEYFVSYYDYYQPEAYVPARDLFIEKDSSINEHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER+D I+V++VSCIYGIG Y MI+ L+ G+ + Q++++ L + QY+R Sbjct: 130 SATKSLLERDDAIIVATVSCIYGIGDPVDYHGMILHLRSGEKISQRDVIKRLTEMQYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RG FRV GD ++IFP+ + A RVS+F ++++ +S F PLTG+ ++ + +Y Sbjct: 190 ELEFKRGVFRVRGDVVDIFPAENSEAAVRVSLFDDEVDNLSLFDPLTGRMLQKLSRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T AM+ IK+EL+ RL +E RL+EAQRLEQR +DLEML G C+ Sbjct: 250 PSSHYVTPRSTTLRAMETIKDELRERLEHYYQEHRLVEAQRLEQRTRFDLEMLNELGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G+NPGEPPPTL +Y+P ++L+ +DESHVT+PQI GMY+GD RK L Y Sbjct: 310 GIENYSRHLSGKNPGEPPPTLLDYLPPNALMIIDESHVTVPQIGGMYKGDRSRKENLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ P T+ VSATP ++E Q G IVEQ++RPTGLVDP +E Sbjct: 370 GFRLPSALDNRPLRFEEFEKRMPQTVFVSATPANYE-HQHSGQIVEQVVRPTGLVDPIIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ E++L + R+L+T LTKRMAEDLT+Y + I+VRY+HS++ T+E Sbjct: 429 VRPVTTQVDDLMSEVHLRTAKNERVLVTTLTKRMAEDLTDYFSDHKIKVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N ILYA+TIT+S+++AIDET RRR+KQ++HN +H I P+SV ++I ++ID + + Sbjct: 549 HINGTAILYAETITRSMRVAIDETNRRRQKQIDHNVQHQIIPRSVHKRIKDLIDGVYNYE 608 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ N+ Q ++S+ + ++ + K+M AA NL FE+AAR RDE+K LK+ Sbjct: 609 SSQQNLKAAQTQARYDAMSESQLAKEIQRVEKKMFSAAKNLEFEQAARYRDELKSLKN 666 >gi|78486095|ref|YP_392020.1| excinuclease ABC subunit B [Thiomicrospira crunogena XCL-2] gi|123555134|sp|Q31ES7|UVRB_THICR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|78364381|gb|ABB42346.1| Excinuclease ABC subunit B [Thiomicrospira crunogena XCL-2] Length = 678 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/672 (55%), Positives = 496/672 (73%), Gaps = 22/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL++G+ E Q LLGVTGSGKTFTMA VI +QRP I++A Sbjct: 5 FEIVSQYEPAGDQPVAITQLVEGLEDGEAFQTLLGVTGSGKTFTMANVIAKVQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NEQI+++R Sbjct: 65 HNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPASDTYIAKDSSVNEQIEQLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D +++++VS IYG+G + Y +MI+QL++GD++ Q+++L L QY R Sbjct: 125 SATKALMERKDVVLIATVSAIYGLGDPDQYLKMILQLRLGDTISQRDILQQLTTMQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD I++FP+ E+ A R+ +F ++++ ++ F PLTG+ + I +Y Sbjct: 185 DVELWRGCFRVRGDVIDVFPAEAEEYAVRIELFDDEVDSLAWFDPLTGEVLTRPTRITVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ + ++ +K EL RL EL +L+EAQRLE+R D+EM+ G C Sbjct: 245 PKSHYVTPKERVLQTIEQVKVELVSRLEELRSLNKLVEAQRLEERTRLDIEMMSELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTL +Y+P+++L+F+DESHVTIPQI GMY+GD RK L + Sbjct: 305 GIENYSRYLSGRASGEPPPTLLDYLPKNALMFIDESHVTIPQIGGMYKGDRSRKENLVTF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP+RF+E+ + P TI VSATPG +E E + IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSAMDNRPMRFDEFEKIMPQTIFVSATPGKYEAEH-ESKIVEQVVRPTGLLDPVLE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI L ++ R+L+T LTKRMAE+LTEYL E N+RVRY+HS++ T+E Sbjct: 424 VRPALTQVDDLLGEIRLRVEKEERVLVTTLTKRMAENLTEYLEEHNVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV K ILYAD ITKS+Q AIDET RRR KQ++HN + I PQ + +KI ++ LED Sbjct: 544 NVAGKAILYADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKLNKKITDI-----LED 598 Query: 741 ---------------AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 AA + Q++ ++ + + +K + KQM+ AA +L+FE AA Sbjct: 599 SPYAPKPGASAAKLKAAEADGEYSPQEMQRMTPAQLASEIKRMEKQMYQAAKDLDFELAA 658 Query: 785 RIRDEIKRLKSS 796 ++RD++KRLKSS Sbjct: 659 KLRDDLKRLKSS 670 >gi|121997343|ref|YP_001002130.1| excinuclease ABC subunit B [Halorhodospira halophila SL1] gi|121588748|gb|ABM61328.1| Excinuclease ABC subunit B [Halorhodospira halophila SL1] Length = 676 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/659 (56%), Positives = 491/659 (74%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI +L+ GI S Q LLGVTGSGKTFT+A VIE +QRPAI++A Sbjct: 5 FKLNARFQPAGDQPQAIDELVDGIESGLSDQTLLGVTGSGKTFTVANVIERLQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + F P N VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMREFLPENRVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LE D ++V+SVS IYG+G ++Y M++ L G+ ++Q+ +L L + QY R Sbjct: 125 SATKAVLEHKDTVIVASVSSIYGLGDPQAYMSMLLHLVRGEQIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGT+R G+ I+IFP+ + A RV +F ++IEEIS F PLTG+ +R V + IY Sbjct: 185 DTELTRGTYRARGEVIDIFPAESPEEAVRVQLFDDEIEEISWFDPLTGEVLRRVPRVTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ ++ A++ IKEEL+ RL EL +L+EAQRLE+R +D+EM+ G C Sbjct: 245 PKTHYVTPKEQIHQAVEQIKEELRERLDELRAADKLVEAQRLEERTRFDMEMMLELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+YIP +++LF+DESHVT+PQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYIPPEAVLFIDESHVTVPQIGGMYKGDRSRKQTLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P T+ VSATPG +E E+ G +VEQ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLKFEEFRRLAPQTVYVSATPGPFE-EEHAGQVVEQVVRPTGLVDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DVY EI A++ R+L+T LTKRMAEDLTEYL E +RVRY+HS+V T+E Sbjct: 424 VRPATAQVDDVYGEIRARAERDERVLVTTLTKRMAEDLTEYLEENGVRVRYLHSDVDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RTEIIRDLRLGHFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736 N++ + ILYAD +T S++ AIDET RRR KQ+ HN+ H I PQ +++++ ++++ P Sbjct: 544 NIDGRAILYADQMTDSMRRAIDETERRRAKQIAHNEAHGITPQGIRKEVPDIMERGGVPA 603 Query: 737 LLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ +A + + LS + ++ L K+M A L FEEAAR+RDEI+R++ Sbjct: 604 PGAPQRAARVAEEAGEYAGLSPAEAVRRIRELEKRMQEHARELEFEEAARVRDEIRRIE 662 >gi|254481916|ref|ZP_05095159.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2148] gi|214038045|gb|EEB78709.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2148] Length = 671 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 8/666 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP AI QL++GI + Q LLGVTGSGKTFTMA V+E MQRP I+MA Sbjct: 5 FKVESSFQPAGDQPEAIRQLVEGIQAGLASQTLLGVTGSGKTFTMAHVVEQMQRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER DC+VV++VS IYG+G SY +M + L G+ ++Q+E+L L QY R Sbjct: 125 SATKALMEREDCLVVATVSAIYGLGDPASYYKMRMHLSRGEIIDQREVLRHLADLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R +RV GD I+IFP+ E A R+ +F +IE I F PLTG V I I+ Sbjct: 185 DVDFGRANYRVRGDVIDIFPADSEREAVRIELFDKEIENIYTFDPLTGAVESKVPRITIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ I+ EL +RL +L+ +L+EAQRL QR YD+EM+ G CQ Sbjct: 245 PKSHYVTPRDTMLQAVEQIEAELAVRLDQLKDNQKLVEAQRLGQRTKYDMEMIRELGYCQ 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL+GR GEPPPTLFEY+P+++L+ +DESH TIPQI MY+GD RK TL EY Sbjct: 305 GVENYSRYLSGRKAGEPPPTLFEYLPDNALVIIDESHATIPQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+EW L P I VSATPG++E + G +VEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFQEWEQLVPQAIFVSATPGAYEADHA-GRVVEQVVRPTGLIDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A +QV+D+ EI L +G R+L+T LTKRM+EDLTEYL + +RVRY+HS++ T+E Sbjct: 424 IRPATSQVDDLLGEIKLTVDRGERVLVTTLTKRMSEDLTEYLADHGVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N+N + ILYAD +T S++ AI ET RRREKQLEHN++H I P+ V++ + ++++ Sbjct: 544 NLNGRAILYADRMTGSMERAIAETARRREKQLEHNEEHGITPRGVEKSVKDIMEGARRMP 603 Query: 739 -----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A ++ A+ LS LK L QM A NL FEEAA +RD++ Sbjct: 604 TKGKGKKVAEPKLAFGAEVARLSPAALSRKLKQLESQMQEHAKNLEFEEAAALRDQLTEF 663 Query: 794 KSSPYF 799 K + Sbjct: 664 KQVAFL 669 >gi|254491477|ref|ZP_05104656.1| excinuclease ABC, B subunit [Methylophaga thiooxidans DMS010] gi|224462955|gb|EEF79225.1| excinuclease ABC, B subunit [Methylophaga thiooxydans DMS010] Length = 668 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/657 (57%), Positives = 491/657 (74%), Gaps = 3/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P+GDQPAAI L++G+ + E Q LLGVTGSGKTFT+A V +A+ RP +V+A Sbjct: 5 FQLVSDFSPAGDQPAAIETLIEGLENGEMWQTLLGVTGSGKTFTIANVAQAVGRPMMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFP+N+VEYFVSYYDYYQPEAYVP +DT+I+K++S+NEQI++MR Sbjct: 65 PNKTLAAQLYSEMKEFFPNNSVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEQIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D I+VSSVSCIYG+G ++Y +M++ L GD + Q+ +L L + QY R Sbjct: 125 SATKAMLERRDAIIVSSVSCIYGLGEKDAYLEMVLHLVQGDVISQRNILRRLTELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGT+RV G+ I+IFP+ E A RV +F ++IE+IS F PLTG+ ++ + I IY Sbjct: 185 DIELHRGTYRVRGEVIDIFPAESERDAVRVELFDDEIEQISYFDPLTGEVLQRLSRITIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L A+ IKEEL+ RL L +L+EAQRLEQR +D+EML G C Sbjct: 245 PKTHYVTPRDNLLKAVDAIKEELRERLEHLNSHDKLVEAQRLEQRTRFDIEMLLELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGE PPTLF+Y+P D++L +DESHV +PQI MY+GD RK TL Y Sbjct: 305 GIENYSRHLSGRGPGEAPPTLFDYLPNDAILVIDESHVMVPQIGAMYKGDRSRKETLVNY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEEW L P TI VSATP +E E IVEQ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLMFEEWEKLAPQTIFVSATPSKYENEHS-STIVEQVVRPTGLVDPQVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ R+L+T LTKRM+EDLT+YL E N++VRY+HS++ T+E Sbjct: 424 IRPVGTQVDDLLSEIHKRTAVNERVLVTTLTKRMSEDLTDYLREHNVKVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG+FDVL+GINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RVEILRDLRLGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S+Q A+DET RRREKQL HN++H I PQ +K+ I +D + Sbjct: 544 NLNGRAILYADEITGSMQRAMDETERRREKQLAHNEEHGITPQGIKKAIRAGMDDAKDKK 603 Query: 741 AATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + A+ +L+ ++ ++ + + M+ AA NL FEEAA++RDE++ L+S Sbjct: 604 DSDYAKVAEEQAEYAALTPQQLAKRIQKIEQSMYKAAQNLEFEEAAKLRDELEHLRS 660 >gi|83647651|ref|YP_436086.1| excinuclease ABC subunit B [Hahella chejuensis KCTC 2396] gi|83635694|gb|ABC31661.1| excinuclease ABC, B subunit [Hahella chejuensis KCTC 2396] Length = 670 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/667 (56%), Positives = 489/667 (73%), Gaps = 18/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ++ +Y P+GDQP AIA L+ G+ Q LLGVTGSGKTFTMA VI MQRPA+VMA Sbjct: 4 FQLKANYQPAGDQPGAIAGLVDGLRDGLLHQTLLGVTGSGKTFTMANVIAEMQRPAMVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V++VS IYG+G +SY +M++ L GD V+Q+ LL L + QY R Sbjct: 124 SATKALMERKDVVIVATVSAIYGLGDPQSYKKMMLHLDRGDKVDQRSLLRRLAELQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R +RV GD I++FP+ E A R+ +F ++IE +S F PLTG+ R V IY Sbjct: 184 DLELHRANYRVRGDVIDVFPAESESDALRIELFDDEIESLSWFDPLTGEVYRRVPRATIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY TPR + A + IK EL+ RL + +LLEAQRLE+R YDLEM+ G C Sbjct: 244 PKTHYATPRQVILDATEQIKTELQERLQQFRGSSKLLEAQRLEERTRYDLEMMYELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D+LLF+DESHVTIPQI MYRGD RK TL Y Sbjct: 304 GIENYSRYLSGRQAGEPPPTLFDYLPSDALLFIDESHVTIPQIGAMYRGDRSRKETLVSY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+EW L P I VSATPG++E + QG +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFDEWERLAPQMIFVSATPGNYEADH-QGQVVEQVVRPTGLVDPDIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A TQV+D+ +I+ ++ R+L+T LTKRMAEDLT++L ++ +RVRY+HS+V+T+E Sbjct: 423 VLPASTQVDDLLGQIHDRVERNERVLVTTLTKRMAEDLTDFLLDKGVRVRYLHSDVETVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV K ILYAD IT S+Q A+DET RRR KQ+ +N++H + P+ + +K+ ++++ Sbjct: 543 NVRGKAILYADKITGSMQRAMDETERRRNKQISYNEEHGVIPRGLDKKVADIMEGARVPG 602 Query: 737 ---------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 + E A++ N+ +A+ + ++ L+ L M+ AA NL FE+AA++R Sbjct: 603 SKKGASQRRVAETASSYNVEAEAR----TPQEYAKMLQKLETAMYEAARNLEFEKAAQLR 658 Query: 788 DEIKRLK 794 D++K LK Sbjct: 659 DQLKELK 665 >gi|95929119|ref|ZP_01311864.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95135020|gb|EAT16674.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 663 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/656 (56%), Positives = 489/656 (74%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y P+GDQP AI +L++GI Q+LLGVTGSGKTFTMA V+E +QRP +V+A Sbjct: 4 FTLKSVYQPAGDQPKAIEELVEGIEDGAPHQVLLGVTGSGKTFTMANVVERVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FP+NAVEYFVSYYDYYQPEAYV TDT+IEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLYGEFRELFPNNAVEYFVSYYDYYQPEAYVASTDTFIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D ++V+SVSCIYG+GS E+Y M+V L++G +E+ LL LV+ QY+R Sbjct: 124 SATRSLLTRRDVLIVASVSCIYGLGSPEAYFGMLVGLEVGMELERNSLLKKLVEIQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS+EIFP++ ED+A R+ FG++I+ ISE PL G I + I+ Sbjct: 184 DADFHRGTFRVRGDSVEIFPAYEEDLALRIEFFGDEIDAISEIDPLRGTVIDKLNKTSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV RPTL A+K I++EL+ R+ +L+EAQR+EQR +D+E++E G CQ Sbjct: 244 PASHYVATRPTLERAIKQIQDELQQRITYFRDRNQLIEAQRIEQRTMFDIEVMEEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR GEPP TLF+Y P+D+LLF+DESHV++ Q+ MYRGD RK L Y Sbjct: 304 GIENYSRYMDGRGEGEPPATLFDYFPDDALLFIDESHVSVSQVGAMYRGDRSRKENLVGY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ T+ VSATP +ELE+ QG++VEQI+RPTGLVDPP+E Sbjct: 364 GFRLPSALDNRPLKFEEFESKNLQTVYVSATPADYELEKAQGVVVEQIVRPTGLVDPPIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A+ QV+D+ ++I RIL+T LTKRMAEDLT YL E IRVRY+HS++ T+E Sbjct: 424 IRPAQQQVDDLVEQIRDTIATQARILVTTLTKRMAEDLTGYLEEIGIRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR LR G FDVL+GINLLREGLDIPE GLV ILDADKEGFLRS+ SLIQT GRAAR Sbjct: 484 RMEIIRGLRQGDFDVLIGINLLREGLDIPEVGLVTILDADKEGFLRSERSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD IT+S+Q +DET RRR++QL N +H I P+SV + + +++ + Sbjct: 544 NVDGRVIMYADRITRSMQACLDETERRRQQQLAFNAEHGIVPKSVSKSMRTILEDL---K 600 Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ A++L+ S + + + ++RK+M AA LNFE+AA +RD++ +L+ Sbjct: 601 GVSAEVAQVAEELADWHSPAELRKKINAVRKEMLAAAAELNFEQAAELRDQLLKLE 656 >gi|270158508|ref|ZP_06187165.1| excinuclease ABC subunit B [Legionella longbeachae D-4968] gi|289166654|ref|YP_003456792.1| excinuclease ABC subunit B [Legionella longbeachae NSW150] gi|269990533|gb|EEZ96787.1| excinuclease ABC subunit B [Legionella longbeachae D-4968] gi|288859827|emb|CBJ13808.1| excinuclease ABC subunit B [Legionella longbeachae NSW150] Length = 663 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/655 (56%), Positives = 481/655 (73%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ D+ P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RPA++M Sbjct: 4 LFKIYADFQPAGDQPTAIASLIDGLKSGLAKQTLLGVTGSGKTFTIAHVIQAMRRPALIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSIN+ I++MR Sbjct: 64 APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ +Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMVLHLSRGEQSDQRKILRRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + + RG FRV GD I+IFP+ E A RV +F +++E I++F PLTG+ +R + + + Sbjct: 184 TNFALERGQFRVHGDVIDIFPADSEKEAIRVELFDDEVENIAQFDPLTGEILRRLPRVTV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + + ++KEEL+ RL E + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILQTVDWVKEELQERLAEFNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P+++LL +DESHVT+PQI GMYRGD RK TL + Sbjct: 304 SGIENYSRYLSGREAGEPPPTLFDYLPDEALLIIDESHVTVPQIGGMYRGDRSRKETLVQ 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEARSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR RTQV+D+ EI + RIL+T LTKRMAEDLT+YL E I+VRY+HS++ T+ Sbjct: 423 EIRPVRTQVDDLMSEIRQVIRHNGRILVTTLTKRMAEDLTDYLNEHGIKVRYLHSDIDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 483 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ + ILYAD IT S+Q A+DET RRREKQ N+ H I P+ + + I ++++ Sbjct: 543 RNMKGRAILYADKITGSMQRALDETNRRREKQQAFNEAHGITPKGINKSIADIMEGAFQG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + S ++ H+ +L KQM+L A N+ FE AA++RDE LK Sbjct: 603 KRKVAVAESVPEYKHWSTQELIKHINTLEKQMYLHAKNMEFEAAAKVRDEYLLLK 657 >gi|34498607|ref|NP_902822.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472] gi|81834593|sp|Q7NTA7|UVRB_CHRVO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|34104461|gb|AAQ60819.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472] Length = 670 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/662 (56%), Positives = 484/662 (73%), Gaps = 1/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + P+GDQPAAI QL++G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 10 FQLNQPFPPAGDQPAAIEQLVEGLSDGLSYQTLLGVTGSGKTYTMANVIARTGRPAIIMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE + FFPHNAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 70 HNKTLAAQLYSEMREFFPHNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER DCI+V++VS IYGIG Y QMI+ LK G++ Q++++S L QY R Sbjct: 130 SATKSILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGETTPQRDIISRLTTMQYSRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD I+I+P+ D A RVS+F +++E ++ F PLTG + V ++ Sbjct: 190 DLDFGRGTFRVRGDVIDIYPAESSDTALRVSLFDDEVETLTLFDPLTGTTKQRVGRYTVF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IK+EL+ R+ +KEG+L+EAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTPRDTVLRACEQIKDELRHRIEWYQKEGKLVEAQRIEQRTRFDLEMLYEMGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PG+PPPTL +Y+P+++L+F+DESHVT+PQ+ MY+GD RKA L EY Sbjct: 310 GIENYSRHFSGRGPGDPPPTLIDYLPKNALMFIDESHVTVPQVGAMYKGDAARKANLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ L P TI VSATP +E + G +VEQ++RPTGLVDP +E Sbjct: 370 GFRLPSAADNRPLKFHEFEQLMPQTIFVSATPAVYEKDHA-GQVVEQVVRPTGLVDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI +G R+L+T LTKRMAE L +Y E ++VRY+HS++ T+E Sbjct: 429 IRPVATQVDDLLSEIRERMARGERVLVTTLTKRMAEQLADYYTEHGVKVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K +LYAD IT S++ A+DET RRR KQ+ N +H I P+ V++KI ++ID + + Sbjct: 549 NLRGKALLYADRITDSMRKAMDETERRRAKQMAFNAEHGIVPKGVEKKIKDIIDGVYSVE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 A + +A + +K +K L K+M AA NL FE AARIRDE+K+LK + Sbjct: 609 AERKKLVDEAAVAMMDEKTLSKEIKRLEKEMMEAARNLEFERAARIRDELKQLKEKAWLS 668 Query: 801 GL 802 L Sbjct: 669 DL 670 >gi|294141104|ref|YP_003557082.1| excinuclease ABC subunit B [Shewanella violacea DSS12] gi|293327573|dbj|BAJ02304.1| excinuclease ABC, B subunit [Shewanella violacea DSS12] Length = 671 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/664 (55%), Positives = 492/664 (74%), Gaps = 6/664 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F++++DY P+GDQP AIA+L+ GI S Q LLGVTGSGKTFT+A VI+ M RP I+ Sbjct: 4 SIFRLESDYSPAGDQPKAIAKLVDGIESGLATQTLLGVTGSGKTFTIANVIKKMGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G ESY +M++ L++GD + Q+++L L + QYK Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPESYLKMLLHLRVGDFMGQRDILIRLSELQYK 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGTFRV G+ I+IFP+ + A RV +F ++IE +S F PLTG I+ + I Sbjct: 184 RNDIALDRGTFRVRGEVIDIFPADSDKNAIRVELFDDEIERLSLFDPLTGHIIKRIARIS 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y SHYVTPR + A + IK EL+ R +L +L+EAQR+ +R+ YDLEM+ G Sbjct: 244 VYPKSHYVTPREKIIAATEEIKVELRERKQQLLDNNKLIEAQRISERVQYDLEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GE PPTL +Y+P+D LL +DESHVT+PQI MY+GD RK+ L Sbjct: 304 CSGIENYSRYLSGRATGEGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKSNLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +E+++C G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEDLMPQTIFVSATPSQYEIDKCDGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R TQV+D+ EI + R+L+T LTKRM+EDL+EYL E I+VRY+HS++ T Sbjct: 424 VEVRPVGTQVDDLLSEIGKRIKVDERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQT+GRA Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTMGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733 ARN+N KVILYAD ITKS+ A+ ET RRR+ Q ++N + I P+ V +KI +V+ Sbjct: 544 ARNINGKVILYADRITKSMAAAMGETDRRRKMQHQYNLDNGITPKGVVKKITDVMDVGER 603 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D +L D ++ N++ + + + +H + +L KQMH A NL FE+AA +RD++ + Sbjct: 604 DKGILGDYSSLNVAQNRAKYVVQDAASLSHQIDALEKQMHEHAKNLEFEQAAAVRDQVLK 663 Query: 793 LKSS 796 L+ + Sbjct: 664 LRDA 667 >gi|309781136|ref|ZP_07675873.1| excinuclease ABC subunit B [Ralstonia sp. 5_7_47FAA] gi|308919957|gb|EFP65617.1| excinuclease ABC subunit B [Ralstonia sp. 5_7_47FAA] Length = 724 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/683 (55%), Positives = 497/683 (72%), Gaps = 15/683 (2%) Query: 121 KIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176 ++ +PH + SK +TF FQ+ Y P+GDQP AI QL++ I Q LLGV Sbjct: 34 QVPSPH------DESKFVTFEGSPFQLYQPYPPAGDQPEAIRQLVENIEDGLSYQTLLGV 87 Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236 TGSGKTFTMA VI + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEA Sbjct: 88 TGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEA 147 Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296 YVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ Sbjct: 148 YVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILT 207 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L+ GD V Q+++++ L+ QY R + RGTFRV GD+++IFP+ ++A R+ +F ++ Sbjct: 208 LRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDE 267 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 +E + F PLTG+ + + +Y +SHYVTPR T+ A++ IK EL+ RL KE +L Sbjct: 268 VESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKL 327 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 +EAQRLEQR +DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DES Sbjct: 328 VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDES 387 Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 HV I Q++GMY GD RK TLAEYGFRLPS +DNRPL+F E+ VSATPG +E Sbjct: 388 HVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYE 447 Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596 + +VEQ++RPTGLVDP +E+R A TQV+D+ EI++ + G R+L+T LTKRMAE Sbjct: 448 KKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVEAGERVLVTTLTKRMAE 507 Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 LTE+L E ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAI Sbjct: 508 QLTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAI 567 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 LDADKEGFLR++ SLIQTIGRAARNVN ILYAD +T S++ AIDET RRR KQ+ HN+ Sbjct: 568 LDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAHNE 627 Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMH 772 H I P+ V ++I ++ID + D A + AQ+ + +S+K+ +K L KQM Sbjct: 628 AHGITPRGVVKRIKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQASKEIKRLEKQML 686 Query: 773 LAADNLNFEEAARIRDEIKRLKS 795 A NL FE+AA +RD++ +LKS Sbjct: 687 DHAKNLEFEKAAAVRDQLAKLKS 709 >gi|241662553|ref|YP_002980913.1| excinuclease ABC subunit B [Ralstonia pickettii 12D] gi|240864580|gb|ACS62241.1| excinuclease ABC, B subunit [Ralstonia pickettii 12D] Length = 696 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/683 (55%), Positives = 497/683 (72%), Gaps = 15/683 (2%) Query: 121 KIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176 ++ +PH + SK +TF FQ+ Y P+GDQP AI QL++ I Q LLGV Sbjct: 6 QVPSPH------DESKFVTFEGSPFQLYQPYPPAGDQPEAIRQLVENIEDGLSYQTLLGV 59 Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236 TGSGKTFTMA VI + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEA Sbjct: 60 TGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEA 119 Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296 YVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ Sbjct: 120 YVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILT 179 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L+ GD V Q+++++ L+ QY R + RGTFRV GD+++IFP+ ++A R+ +F ++ Sbjct: 180 LRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDE 239 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 +E + F PLTG+ + + +Y +SHYVTPR T+ A++ IK EL+ RL KE +L Sbjct: 240 VESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKL 299 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 +EAQRLEQR +DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DES Sbjct: 300 VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDES 359 Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 HV I Q++GMY GD RK TLAEYGFRLPS +DNRPL+F E+ VSATPG +E Sbjct: 360 HVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYE 419 Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596 + +VEQ++RPTGLVDP +E+R A TQV+D+ EI++ + G R+L+T LTKRMAE Sbjct: 420 KKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVKAGERVLVTTLTKRMAE 479 Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 LTE+L E I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAI Sbjct: 480 QLTEFLSENGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAI 539 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 LDADKEGFLR++ SLIQTIGRAARNVN ILYAD +T S++ AIDET RRR KQ+ HN+ Sbjct: 540 LDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAHNE 599 Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMH 772 H I P+ V ++I ++ID + D A + AQ+ + +S+K+ +K L KQM Sbjct: 600 AHGITPRGVVKRIKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQASKEIKRLEKQML 658 Query: 773 LAADNLNFEEAARIRDEIKRLKS 795 A NL FE+AA +RD++ +LKS Sbjct: 659 DHAKNLEFEKAAAVRDQLAKLKS 681 >gi|119505293|ref|ZP_01627368.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2080] gi|119458984|gb|EAW40084.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2080] Length = 694 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/669 (55%), Positives = 492/669 (73%), Gaps = 11/669 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + + P+GDQPAAI QL +GI + Q+LLGVTGSGKTFTMA VIE +QRP IVM Sbjct: 25 LFEISSSFEPAGDQPAAIVQLTEGIQAGLASQILLGVTGSGKTFTMAHVIEKLQRPTIVM 84 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQLY EFK FFP+NAVEYFVSYYDY+QPEAYVP +DT+IEK++ +N+ I++MR Sbjct: 85 AHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYFQPEAYVPSSDTFIEKDAQVNDHIEQMR 144 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER DC+VV++VS IYG+G E+Y +M++ L G+ ++Q+ +L L + QY R Sbjct: 145 LSATKALLEREDCLVVATVSAIYGLGDPEAYFKMVMHLSRGEIIDQRGVLRQLAELQYTR 204 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI RGT+RV G+ I+IFP+ +++A R+ +F +IE IS F PLTG+ + + I Sbjct: 205 NDIDFRRGTYRVRGEIIDIFPAESDELAIRIELFDEEIENISRFDPLTGEIHDKLPRVTI 264 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYV+ R T+ A+ I+EEL+ R+ + ++ +LLEAQR++QR YD+EM+ G C Sbjct: 265 FPKTHYVSSRDTMMGAIDLIEEELEQRVKQFKEADKLLEAQRIQQRTRYDIEMIRELGFC 324 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 Q IENYSRYL+GR PGEPPPTLFEY+P ++L+ VDESHVT+PQI GMY+GD RK TL E Sbjct: 325 QGIENYSRYLSGRAPGEPPPTLFEYLPSNALIMVDESHVTVPQIGGMYKGDRSRKETLVE 384 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEEW LRP + VSATPG++ELE G VEQ++RPTGLVDP V Sbjct: 385 YGFRLPSALDNRPLRFEEWEHLRPQGVFVSATPGAYELEHT-GRTVEQVVRPTGLVDPEV 443 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ARTQV+D+ EI G R+L+T LTKRMAEDLTE+L E ++RVRY+HS++ T+ Sbjct: 444 EVRPARTQVDDLLKEIRETVAIGDRVLVTTLTKRMAEDLTEFLSEHDVRVRYLHSDIDTV 503 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT+GRAA Sbjct: 504 ERVEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRAA 563 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734 R++ + ILYAD IT S++ A+DET RRR KQ+E N+ + I P+ +++ + ++++ Sbjct: 564 RHIRGRAILYADKITGSMERAMDETQRRRTKQIEFNEANGITPKGIEKSVQDILEGARRM 623 Query: 735 PILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 P A ++ + ++L+ + L QM A NL FEEA RIRD+ Sbjct: 624 PTKARSAKDRRVAEEKAAYAAEVVNLTPAALARKIAQLEGQMLEHAKNLEFEEAGRIRDQ 683 Query: 790 IKRLKSSPY 798 + +K + Sbjct: 684 LAEIKQVAF 692 >gi|71898922|ref|ZP_00681089.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1] gi|71731334|gb|EAO33398.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1] Length = 669 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 495/663 (74%), Gaps = 6/663 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FFQ+ + Y PSGDQPAA+ +L+ H+ Q+LLGVTGSGKT+T+A V+E +Q+P +VM Sbjct: 4 FFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT++LL R+D +VV++VS IYG+G+ E Y + + L +G+ +EQ++L+ L + QY R Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ ++RG+FRV G+ +++FP+ E A R+ +F +IE +S F PLTGQ +R ++ + Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEIEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY T R +A+ IK+ELK L L +L+EAQRL QR +DLEM+ G C Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEEW P +I VSATPGS+E + G ++E ++RPTGL+DP + Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR TQV+D+ +IN + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+ Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS +SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735 R+V + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV I +++ D Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603 Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + ++ + A +L++ + A +K L +QM+ A +L FE+AARIRD+I+RL Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQMYQHARDLEFEDAARIRDQIQRL 663 Query: 794 KSS 796 + + Sbjct: 664 REA 666 >gi|88706030|ref|ZP_01103738.1| excinuclease ABC, B subunit [Congregibacter litoralis KT71] gi|88699744|gb|EAQ96855.1| excinuclease ABC, B subunit [Congregibacter litoralis KT71] Length = 672 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/668 (55%), Positives = 484/668 (72%), Gaps = 10/668 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +++GI + Q LLGVTGSGKTFTMA VIE +QRP IVMA Sbjct: 5 FKVNSSFKPAGDQPAAIKSIVEGIQAGLAAQTLLGVTGSGKTFTMAHVIEQLQRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER DCIVV++VS IYG+G +SY +M++ + G+ ++Q+E+L L + QY+R Sbjct: 125 SATKALLERKDCIVVATVSAIYGLGDPKSYFKMVMHISRGEMIDQREVLRHLAELQYQRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV GD I++FP+ E A R+ +F ++E IS F PLTG I V + IY Sbjct: 185 DIDFARGTYRVRGDVIDVFPAEAEAEAIRIELFDEEVENISLFDPLTGAIIAKVPRVTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVT R + A+++I+ EL R+ +L+ +L+EAQRL QR YD+EM+ G CQ Sbjct: 245 PKTHYVTSRDIMLNAIEHIEVELDERVKQLKSVEKLVEAQRLSQRTRYDIEMIRELGYCQ 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL+GR PGE PPTL+EY+P+D+L+ +DESH +IPQI MY+GD RK TL EY Sbjct: 305 GVENYSRYLSGRAPGEAPPTLYEYLPDDALVIIDESHASIPQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW L P + VSATPG +E E G +VEQ++RPTGL DP +E Sbjct: 365 GFRLPSALDNRPLRFEEWENLLPQAVFVSATPGPYE-EAHAGQVVEQVVRPTGLTDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A + G R+L+T LTKRM+EDLTEYL E ++RVRY+HS++ T+E Sbjct: 424 IRPATTQVDDLLGEIHKAVEMGDRVLVTTLTKRMSEDLTEYLNEHDVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGR AR Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRGAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735 N+ + ILYAD +T S+Q AIDET RRR KQ+ N+ +NI P V + I ++++ P Sbjct: 544 NLRGRAILYADKVTGSMQRAIDETDRRRRKQVAFNEANNITPIGVTKSIQDIMEGARRMP 603 Query: 736 ILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + A ++ + L LS L + QMH A NL FE+AA +RD++ Sbjct: 604 TKAKAKGQKVAEETLAYGQELLKLSPAALSRRLDKMEAQMHEHAKNLEFEQAAALRDQLT 663 Query: 792 RLKSSPYF 799 +K + Sbjct: 664 EIKQQTFM 671 >gi|300114475|ref|YP_003761050.1| excinuclease ABC subunit B [Nitrosococcus watsonii C-113] gi|299540412|gb|ADJ28729.1| excinuclease ABC, B subunit [Nitrosococcus watsonii C-113] Length = 701 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/677 (56%), Positives = 493/677 (72%), Gaps = 23/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AIA+L +G+ + E Q LLGVTGSGKTFT+A +I+ +QRP IV+A Sbjct: 5 FQLVSDYQPAGDQPKAIARLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRPTIVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE + FFPHNAV YFVSYYDYYQPEAYVP +DTYI K++S+N+ I++MR Sbjct: 65 PNKTLAAQLYSEMREFFPHNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++ LER D IVV+SVS IYG+G +SY M++ L +GD+V+ + +L L + QY+R Sbjct: 125 SATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAELQYQRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGT+RV G+ I+I+P+ E A RV +F ++IE +S F PLTG+ + V + +Y Sbjct: 185 DTELRRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEVLHQVSRLTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L A+ IK EL RL +L +L+EAQRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPREVLLQAVDEIKIELAERLEQLYGVNKLVEAQRLEQRTCFDIEMILELGYCA 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R PGE PPTLF+Y+P+++LL +DESHVT+PQ+ MYRGD RK TL EY Sbjct: 305 GIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW L P I VSATPG +E +Q G ++EQ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLKFEEWEQLAPQIIFVSATPGPYE-QQRSGAVIEQVVRPTGLVDPAVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+D+ EI A R+L+TVLTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 424 VRPAGSQVDDLLSEIRQRAAANERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N++ + ILY DT+T S+ AI ET RRR+KQL N+ H I P+ +++ + E+ID Sbjct: 544 NLHGRAILYGDTVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDGVYTPS 603 Query: 735 --------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 P +E+ A + QQL+ L+ L +QMH A NL FE+AAR+ Sbjct: 604 PGKGGRHSPDQVEEKAAEYTRLPPQQLA-------KRLQQLERQMHKHAQNLEFEQAARL 656 Query: 787 RDEIKRLKSSPYFQGLD 803 RDEIK++K F G D Sbjct: 657 RDEIKKIKGW-VFNGGD 672 >gi|88810664|ref|ZP_01125921.1| Excinuclease ABC, B subunit [Nitrococcus mobilis Nb-231] gi|88792294|gb|EAR23404.1| Excinuclease ABC, B subunit [Nitrococcus mobilis Nb-231] Length = 676 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/660 (56%), Positives = 490/660 (74%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI L + + + Q LLGVTGSGKTFTMA VI +QRPA+V+A Sbjct: 5 FELRSRYQPAGDQPGAIEALCQSLVLGNQHQTLLGVTGSGKTFTMANVIARLQRPALVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DTYI K++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEFREFFPTNAVEYFVSYYDYYQPEAYVPASDTYIAKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++++ER D I+V+SVS IYG+G ++Y M++ L D ++Q+ +L L QYKR Sbjct: 125 SATKAIIERRDTIIVASVSAIYGLGDPQAYLSMVLHLVRADRMDQRFILRRLADLQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGT+RV GD I+IFP+ E+ A R+ +F ++IE +S F PLTG+ +R V + IY Sbjct: 185 DAELQRGTYRVRGDVIDIFPAESEEQAVRIELFDDEIESLSYFDPLTGEVMRRVPRLTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR TL A+ IK+ELK RL EL + G+ LEA+RLEQR +DLEM+ G C Sbjct: 245 PKTHYVTPRETLLDAIDKIKQELKARLEELRQAGKPLEAERLEQRTRFDLEMMAELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPP L +Y+P DSLLFVDESHVT+PQ+ GM+RGD RK TL EY Sbjct: 305 GIENYSRYLSGRAAGEPPPCLLDYLPVDSLLFVDESHVTVPQLGGMFRGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ L P I VSATPGS+E +C ++VEQ++RPTGLVDP V Sbjct: 365 GFRLPSALDNRPLRFDEFERLAPQCIHVSATPGSYE-ARCSRVVVEQVVRPTGLVDPAVV 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+++ EI A+ G R+L+T LTKRMAEDLT+YL E +RVRY+HS++ T+E Sbjct: 424 VRPAASQVDELLSEIRERAEIGERVLVTTLTKRMAEDLTDYLAEHGVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFD LVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGKFDALVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N++ ILYAD +T S++ AIDET RRR KQL N +H I P+ +++ + ++++ Sbjct: 544 NIHGTAILYADAMTDSMRRAIDETERRRAKQLAFNVRHGITPRGIEKAVADIMERESGGA 603 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P E A + + + LS + +++L ++MH A NL FEEAA++RDEIKR++ Sbjct: 604 PDSPEHFARVA-EVASPYVKLSPTQAVKRIQALEQRMHKHARNLEFEEAAQLRDEIKRIQ 662 >gi|119476531|ref|ZP_01616882.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2143] gi|119450395|gb|EAW31630.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2143] Length = 676 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/672 (55%), Positives = 487/672 (72%), Gaps = 12/672 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA LL+G+ + + Q LLGVTGSGKTFT+A V+E +QRP IVMA Sbjct: 5 FKVVSKFAPAGDQPTAIAGLLEGVRAGLRGQTLLGVTGSGKTFTIANVVEGIQRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEFKDFFPGNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER+D IVV++VS IYG+G + Y +M++ L GD V+Q+ +L L + QY R Sbjct: 125 SATKALMERSDTIVVATVSAIYGLGDPKLYMKMMLHLDRGDQVDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV GD I++FP+ E A R+ +F +I+ +S F PLTG+ R V + IY Sbjct: 185 DIDFARGTYRVRGDVIDVFPADSEQEAVRIELFDEEIDSLSIFDPLTGEVYRRVPRVSIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ I+EELK RL +L +L+EAQRLEQR YDLEM+ G C Sbjct: 245 PKSHYVTPRETLLGALDKIEEELKERLEQLRNNNKLVEAQRLEQRTRYDLEMIRELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G+PPPTLF+Y+P D+L+ +DESHV +PQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGTGDPPPTLFDYLPPDALVVIDESHVGVPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+EW L I VSATPG++E E +VEQ++RPTGL DP +E Sbjct: 365 GFRLPSALDNRPLRFDEWEQLVSQVIFVSATPGNYEAEHADR-VVEQVVRPTGLTDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A +QV+D+ EI+ + R+L+T LTKRM+EDLT+YL E +RVRY+HS+++T+E Sbjct: 424 IRPATSQVDDLLSEIHKRTKLEERVLVTTLTKRMSEDLTDYLSEHGVRVRYLHSDIETVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N+N + ILYAD IT S++ AI ET RRREKQ+EHNK H I P V + + ++++ + Sbjct: 544 NLNGRAILYADRITGSMERAIGETDRRREKQVEHNKVHGITPVGVVKDVADIMEGARVPG 603 Query: 739 ---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 AA A+ +++ K+ +K + ++M A NL FEEAA RD Sbjct: 604 SKGKRNAKGRKAAEPAAHYQAEVAAMTPKQLVQEIKRMEQKMFEHAKNLEFEEAAATRDS 663 Query: 790 IKRLKSSPYFQG 801 + LK + G Sbjct: 664 VSELKQRVFING 675 >gi|330722188|gb|EGH00083.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC2047] Length = 670 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/668 (56%), Positives = 489/668 (73%), Gaps = 13/668 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T FQ+ + + PSGDQPAAI QL GI + Q LLGVTGSGKTFT A VI RPA+V Sbjct: 3 TDFQVISPFEPSGDQPAAIEQLSNGIEAGLAYQTLLGVTGSGKTFTAANVIANTGRPALV 62 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M Sbjct: 63 LAPNKTLAAQLYGEFKEFFPRNSVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 122 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D IVV++VS IYG+G +Y M++ L GD ++Q+ +L L + QYK Sbjct: 123 RLSATKALLERQDAIVVATVSAIYGLGDPGAYLNMVMHLDRGDRIDQRSVLRRLAELQYK 182 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ + R T+RV GD I+I+P+ + A R+ +F ++IE I+ F PLTG+ ++ + I Sbjct: 183 RNDVELHRATYRVRGDVIDIYPAESDRDAIRIELFDDEIESIAVFDPLTGEVLKRLPRIT 242 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR TL A + IKEELK RL +L +L+EAQRLEQR +D+EM+ G Sbjct: 243 IYPKTHYVTPRETLLEATEKIKEELKERLTQLRDNNKLVEAQRLEQRTNFDVEMILELGY 302 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GE PPTLF+Y+P+++LLFVDESHVTIPQ+ MY+GD RK TL Sbjct: 303 CNGIENYSRYLSGRPDGEAPPTLFDYLPDNALLFVDESHVTIPQLGAMYKGDRSRKETLV 362 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRP+RFEEW P T+ +SATPG +E E G +V+Q++RPTGL+DP Sbjct: 363 EYGFRLPSALDNRPMRFEEWEHAAPQTVFISATPGPYEDEHA-GQVVDQVVRPTGLIDPE 421 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 ++IR A TQV+D+ EIN R+L+TVLTKRMAEDLTEY E +RVRY+HS++ T Sbjct: 422 IQIRPASTQVDDLLSEINRRVANNERVLVTVLTKRMAEDLTEYYGEHGVRVRYVHSDIDT 481 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLR+G+FDVLVGINLLREG+DIPE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 482 VERVEIIRDLRIGEFDVLVGINLLREGIDIPEASLVAILDADKEGFLRSERSLIQTIGRA 541 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N ILYAD +T S+Q A+DET RRREKQL +NK+HNI P+SV + + ++++ + Sbjct: 542 ARNANGTAILYADRVTGSMQRAMDETERRREKQLAYNKEHNITPRSVTKSVEDILEGAVT 601 Query: 739 EDA----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + +D + ++ + GK L L +M+ AA N+ FEEAA+ RD Sbjct: 602 PGARGKQSKKVAEPQADYQVDPKTMT-PVQLGKL-LNQLEDKMYEAAKNMKFEEAAQYRD 659 Query: 789 EIKRLKSS 796 +I + ++ Sbjct: 660 QISAINAN 667 >gi|126669089|ref|ZP_01740020.1| excinuclease ABC subunit B [Marinobacter sp. ELB17] gi|126626444|gb|EAZ97110.1| excinuclease ABC subunit B [Marinobacter sp. ELB17] Length = 689 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/673 (56%), Positives = 488/673 (72%), Gaps = 13/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIA L+ GI S Q LLGVTGSGKTFT+A VI+ +QRP IVMA Sbjct: 18 FQVHSPYVPAGDQPKAIAALVDGIESGLAHQTLLGVTGSGKTFTIANVIQQIQRPTIVMA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 78 HNKTLAAQLYGEFREFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+ +L L + QY R Sbjct: 138 SATKALLERPDAIIVATVSAIYGLGDPQSYKKMMLHLDRGDQLDQRLILKRLAELQYTRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R +RV GD I++FP+ E A R+ +F + +E +S F PLTG+ +R V + +Y Sbjct: 198 DIEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDVVENLSFFDPLTGEMLRRVPRVTVY 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A+++I+ EL RL +L RL+EAQRLE+R YD+EM++ G C Sbjct: 258 PKSHYVTPRQNVLDAIEHIRVELDQRLTQLRDNNRLVEAQRLEERTRYDMEMMQELGYCN 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P ++LL VDESH +IPQI MY+GD RK TL EY Sbjct: 318 GIENYSRYLSGRPPGEPPPTLFDYLPANALLVVDESHASIPQIGAMYKGDRSRKETLVEY 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW + P I VSATPG++E E QG +VEQ++RPTGL+DP +E Sbjct: 378 GFRLPSALDNRPMRFEEWERIAPQMIFVSATPGNYEAEH-QGQVVEQVVRPTGLLDPEIE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I+ R+L+T LTKRM+EDLT++L E +IRVRY+HS++ T+E Sbjct: 437 VRPASTQVDDLISQIHARVAVNERVLVTTLTKRMSEDLTDFLMEHDIRVRYLHSDIDTVE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 497 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AIDET RRR KQ EHN+ H I PQ + +KI +V++ Sbjct: 557 NINGKAILYGDRITGSMQRAIDETARRRAKQAEHNEIHGITPQGLTKKIADVMEGASAGG 616 Query: 741 AATTNISIDAQQLS---------LSKKKGKAHLKSLRK---QMHLAADNLNFEEAARIRD 788 + QQ + + K +A LK + + +M+ AA +L+FE AAR+RD Sbjct: 617 RSRNKSKRPGQQAAEEAEHYRTLVGNKSPQAVLKEMSRLEDEMYKAAADLDFETAARLRD 676 Query: 789 EIKRLKSSPYFQG 801 +I LK + G Sbjct: 677 DISELKEASLRTG 689 >gi|113461753|ref|YP_719822.1| excinuclease ABC subunit B [Haemophilus somnus 129PT] gi|112823796|gb|ABI25885.1| Excinuclease ABC subunit B [Haemophilus somnus 129PT] Length = 677 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/665 (57%), Positives = 488/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AIA L++ ++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 9 FILHSDFQPSGDQPQAIANLVENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 69 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G V+Q+++L+ L + QY R Sbjct: 129 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG + IY Sbjct: 189 DQVFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGANFGAIPRYTIY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL+ R L RL+E QRL QR +D+EM+ G C Sbjct: 249 PKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELGYCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 309 GIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP VE Sbjct: 369 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A+Q R+L+T LTKRMAEDLT+YL E IRVRY+HS++ T+E Sbjct: 429 IRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS+Q AIDET RRREKQ+++N + I PQ++ +K+ E++D + Sbjct: 549 NLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGIVPQALNKKVGELLD---IGQ 605 Query: 741 AATTNISIDAQQLSL-----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A T A+ ++ S K + +K L +QM+ A +L FE+AA IRD+ Sbjct: 606 GAITKSKTKARAKTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAAIRDQ 665 Query: 790 IKRLK 794 ++ LK Sbjct: 666 LQELK 670 >gi|292493208|ref|YP_003528647.1| excinuclease ABC subunit B [Nitrosococcus halophilus Nc4] gi|291581803|gb|ADE16260.1| excinuclease ABC, B subunit [Nitrosococcus halophilus Nc4] Length = 681 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/660 (56%), Positives = 492/660 (74%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +DY P+GDQP AI QL++G+ + E Q LLGVTGSGKTFT+A VI+ +QRP I++A Sbjct: 5 LELVSDYQPAGDQPEAIGQLVEGLTAGEMYQTLLGVTGSGKTFTIANVIQQVQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE + FFPHNAV YFVSYYDYYQPEAY+P +DTYI K++S+N+ I++MR Sbjct: 65 PNKTLAAQLYSEMREFFPHNAVGYFVSYYDYYQPEAYLPASDTYIGKDASVNDYIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++ LER D IVV+SVS IYG+G +SY M++ L +GD+V+Q+ +L L + QY+R Sbjct: 125 SATKAFLERPDAIVVASVSSIYGLGDKDSYLNMVLHLMVGDTVDQRGILRRLAELQYQRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGT+RV GD I+I+P+ E A RV +F ++IE +S F PLTG+ + V + IY Sbjct: 185 DMELGRGTYRVRGDVIDIYPAESEQEAIRVELFDDEIEGLSYFDPLTGEILYRVPRLTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L A++ IK EL RL +L + +L+EAQRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPREILLQAVEDIKVELAERLEQLYRANKLVEAQRLEQRTRFDIEMILELGYCT 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R PGE PPTLF+Y+PE++LL +DESHVT+PQ+ MYRGD RK TL EY Sbjct: 305 GIENYSRFLSRRQPGEAPPTLFDYLPENALLIIDESHVTVPQLGAMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW L P I VSATPG +E +Q G +VEQ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLKFEEWERLAPQIIFVSATPGPYE-QQRSGAVVEQVVRPTGLIDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RSA TQV+D+ EI R+L+TVLTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 424 VRSASTQVDDLLSEIRQRVMAAERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILY D T S+ AI ET RRR+KQ+ N+ H I P+ V++ + E+ID + Sbjct: 544 NLHGKAILYGDETTGSMSRAIAETERRRKKQIAFNQLHGITPRGVQKSVREIIDGVYTPG 603 Query: 741 AAT----TNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I+ +A + + L ++ L+ L +QM+ A NL FEEAAR+RDEI+++K+ Sbjct: 604 TGNARQYARIAEEAAEYTRLPPQQLAKRLQQLEQQMYKHAQNLEFEEAARLRDEIQKIKA 663 >gi|77164648|ref|YP_343173.1| excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707] gi|254434586|ref|ZP_05048094.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27] gi|90111042|sp|Q3JC03|UVRB_NITOC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|76882962|gb|ABA57643.1| Excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707] gi|207090919|gb|EDZ68190.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27] Length = 687 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/676 (56%), Positives = 494/676 (73%), Gaps = 10/676 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KDI FQ+ +DY P+GDQP AI +L +G+ + E Q LLGVTGSGKTFT+A +I+ +QRP Sbjct: 2 KDI--FQLVSDYQPAGDQPEAIERLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRP 59 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 IV+APNK LAAQLYSE + FFP NAV YFVSYYDYYQPEAYVP +DTYI K++S+N+ I Sbjct: 60 TIVLAPNKTLAAQLYSEMREFFPRNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHI 119 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 ++MR SAT++ LER D IVV+SVS IYG+G +SY M++ L +GD+V+ + +L L + Sbjct: 120 EQMRLSATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAEL 179 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY+R D + RGT+RV G+ I+I+P+ E A RV +F ++IE +S F PLTG+ + V Sbjct: 180 QYQRNDRELYRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEILHRVS 239 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + IY +HYVTPR L A+ IK EL RL +L +L+EAQRLEQR +D+EM+ Sbjct: 240 RLTIYPKTHYVTPREVLLQAVDEIKIELAERLEQLYGANKLVEAQRLEQRTRFDIEMILE 299 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENYSR+L+ R PGE PPTLF+Y+P+++LL +DESHVT+PQ+ MYRGD RK Sbjct: 300 LGYCTGIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKE 359 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL EYGFRLPS +DNRPL+FEEW L P TI VSATPG +E +Q G ++EQ++RPTGLV Sbjct: 360 TLVEYGFRLPSALDNRPLKFEEWEQLAPQTIFVSATPGPYE-QQHSGAVIEQVVRPTGLV 418 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R A +QV+D+ EI R+L+TVLTKRMAEDLT+YL + +RVRY+HS+ Sbjct: 419 DPAVEVRPAGSQVDDLLSEIRQRTAADERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSD 478 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTI Sbjct: 479 IDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 538 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ + ILY D +T S+ AI ET RRR+KQL N+ H I P+ +++ + E+ID Sbjct: 539 GRAARNLHGRAILYGDKVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDG 598 Query: 736 ILLEDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + + + S D A+ L ++ L+ L +QMH A NL FE+AAR+RDE Sbjct: 599 VYTPGSGKGHRSPDRVEEKAAEYTRLPPQQLAKRLQQLERQMHKHAQNLEFEQAARLRDE 658 Query: 790 IKRLKSSPYFQGLDDS 805 IKR+K F G D + Sbjct: 659 IKRIKGW-VFNGADSA 673 >gi|104780800|ref|YP_607298.1| excinuclease ABC subunit B [Pseudomonas entomophila L48] gi|95109787|emb|CAK14492.1| exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Pseudomonas entomophila L48] Length = 671 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/669 (56%), Positives = 488/669 (72%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI+ +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRQMVEGIDAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTMVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLTDLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD I+IFP+ + A R+ +F +++E I+ F PLTG+ IR + Y Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IKEELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAVEGIKEELKERLEYLNTHNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P+D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI QG R+L T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIGKRVAQGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S+Q AIDET RRREKQ+ N + I P+ V + I +++ + Sbjct: 543 NLNGKAILYADNITGSMQRAIDETERRREKQIAFNAANGIVPKGVVKDITDIM------E 596 Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785 AT + ++ ++K +A +K L ++M A +L FE AA+ Sbjct: 597 GATVPGARSKKRKGMAKAAEEAGRYEVELQTPAQITKRIKQLEEKMFQFARDLEFEAAAQ 656 Query: 786 IRDEIKRLK 794 +RDEI +L+ Sbjct: 657 LRDEIGQLR 665 >gi|326565749|gb|EGE15911.1| excinuclease ABC subunit B [Moraxella catarrhalis BC1] gi|326571086|gb|EGE21110.1| excinuclease ABC subunit B [Moraxella catarrhalis BC7] gi|326575727|gb|EGE25650.1| excinuclease ABC subunit B [Moraxella catarrhalis CO72] Length = 704 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/661 (57%), Positives = 481/661 (72%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M TD+ PSGDQP AIA+L+KG+ + + QLLLGVTGSGKT+TMAKVI RPAI+MA Sbjct: 41 FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G ESY +M++ + +GD V + ++ LV+ QY+R Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT+R+ G++++I+P+ E +A R+ MF ++IE+I+ F PLTG+ I++V I IY Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIY 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A IKEEL RL + +EAQR+++R YDLEM+ G C Sbjct: 281 PKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCN 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+YIP D+LLF+DESHVT+PQI MY+GD RK TL +Y Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQY 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP++FEEW + P TI VSATP +ELE+ + +VEQ++RPTGLVDP +E Sbjct: 401 GFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQ-VVEQVVRPTGLVDPILE 459 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EINL R+L+T LTKRMAEDLT YL E I+V Y+HS++ T+E Sbjct: 460 IRPVLTQVDDILSEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 519 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAI DADKEGFLRS+ SLIQTIGRAAR Sbjct: 520 RMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +VN K ILYADTIT S+Q AIDET RRR KQ+ N++H I P+S I + ID E Sbjct: 580 HVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDET 639 Query: 741 AATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + I +D L K K + L KQM + L FEEAA++RD + L Sbjct: 640 SEVVQIVLSQALAGVDENILHSPKLLAK-EIARLEKQMQALSRELKFEEAAKVRDTVIAL 698 Query: 794 K 794 K Sbjct: 699 K 699 >gi|81311790|sp|Q5GXX4|UVRB_XANOR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|58427410|gb|AAW76447.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae KACC10331] Length = 688 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 20 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 79 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 80 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 139 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L IG+ ++Q++L+ L QY R Sbjct: 140 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 199 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 200 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 260 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 320 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 380 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 439 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 440 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 499 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 500 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 559 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 560 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 618 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 619 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 676 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 677 DQIQKLKTA 685 >gi|122879246|ref|YP_201832.6| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577607|ref|YP_001914536.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae PXO99A] gi|238689561|sp|B2SUN1|UVRB_XANOP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|188522059|gb|ACD60004.1| excinuclease ABC, B subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 673 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L IG+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKTA 670 >gi|148262374|ref|YP_001229080.1| excinuclease ABC subunit B [Geobacter uraniireducens Rf4] gi|146395874|gb|ABQ24507.1| excinuclease ABC, B subunit [Geobacter uraniireducens Rf4] Length = 664 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/654 (55%), Positives = 488/654 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L +G+ ++ Q+LLGVTGSGKTFTMA VI + RPA+++A Sbjct: 4 FKLNSDYQPRGDQPQAIGELSEGVERGDRDQVLLGVTGSGKTFTMANVIARVNRPALILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FP NAVE+FVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+MRH Sbjct: 64 PNKTLAAQLYGEFKELFPQNAVEFFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDKMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D I+V+SVSCIYGIGS +Y +M + GD+V + ELL LV+ QY+R Sbjct: 124 SATRSLLTRSDVIIVASVSCIYGIGSPAAYQEMHIFFHQGDNVGRDELLKRLVETQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+H ++ A R+ FG+ ++ ISE PL GQ I+ + IY Sbjct: 184 DIDFHRGTFRVRGDIVEIFPAHDDERALRIEFFGDTVDAISEIDPLRGQVIQKLSKCAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + TL A++ I+ EL+ R+ + L+EAQR+EQR +D+EM+E G CQ Sbjct: 244 PASHYVANKETLERAIEQIRLELEERIRWFRERNMLIEAQRIEQRTFFDIEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR+ GEPP TL +Y P+D LLFVDESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRHFDGRSAGEPPYTLLDYFPKDYLLFVDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATP +EL G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLNFQEFTEKLNQVVYVSATPAEYELNIAGGVVVEQVIRPTGLIDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E+ L +G R+L+T LTKRMAEDLT+Y E +RV+Y+HS++ T++ Sbjct: 424 VRPASGQVDDLLHEVRLTVTKGERVLVTTLTKRMAEDLTDYYRELGVRVKYLHSDIDTIQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT GRAAR Sbjct: 484 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ +VI+YAD++T+S+Q +DET+RRR+ Q E+N+KH+I PQS+K+++ +++ + D Sbjct: 544 NLAGRVIMYADSVTRSMQACMDETSRRRKIQSEYNRKHHITPQSIKKEVRTILESVEEHD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ ++ + + K +K LRK+M AA L+FE+AA +RD IK+L+ Sbjct: 604 YYTVPLAAESMEEYAAVKDIPKLVKKLRKEMLAAAKQLDFEKAAGLRDRIKKLE 657 >gi|296113147|ref|YP_003627085.1| excinuclease ABC subunit B [Moraxella catarrhalis RH4] gi|295920841|gb|ADG61192.1| excinuclease ABC subunit B [Moraxella catarrhalis RH4] gi|326560521|gb|EGE10903.1| excinuclease ABC subunit B [Moraxella catarrhalis 7169] gi|326564873|gb|EGE15077.1| excinuclease ABC subunit B [Moraxella catarrhalis 12P80B1] gi|326565389|gb|EGE15566.1| excinuclease ABC subunit B [Moraxella catarrhalis 103P14B1] gi|326570400|gb|EGE20440.1| excinuclease ABC subunit B [Moraxella catarrhalis BC8] gi|326573377|gb|EGE23345.1| excinuclease ABC subunit B [Moraxella catarrhalis 101P30B1] gi|326577192|gb|EGE27086.1| excinuclease ABC subunit B [Moraxella catarrhalis O35E] Length = 704 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/661 (57%), Positives = 481/661 (72%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M TD+ PSGDQP AIA+L+KG+ + + QLLLGVTGSGKT+TMAKVI RPAI+MA Sbjct: 41 FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G ESY +M++ + +GD V + ++ LV+ QY+R Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT+R+ G++++I+P+ E +A R+ MF ++IE+I+ F PLTG+ I++V I IY Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIY 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A IKEEL RL + +EAQR+++R YDLEM+ G C Sbjct: 281 PKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCN 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+YIP D+LLF+DESHVT+PQI MY+GD RK TL +Y Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQY 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP++FEEW + P TI VSATP +ELE+ + +VEQ++RPTGLVDP +E Sbjct: 401 GFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQ-VVEQVVRPTGLVDPILE 459 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EINL R+L+T LTKRMAEDLT YL E I+V Y+HS++ T+E Sbjct: 460 IRPVLTQVDDILGEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 519 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAI DADKEGFLRS+ SLIQTIGRAAR Sbjct: 520 RMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +VN K ILYADTIT S+Q AIDET RRR KQ+ N++H I P+S I + ID E Sbjct: 580 HVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDET 639 Query: 741 AATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + I +D L K K + L KQM + L FEEAA++RD + L Sbjct: 640 SEVVQIVLSQALAGVDENILHSPKLLAK-EIARLEKQMQALSRELKFEEAAKVRDTVIAL 698 Query: 794 K 794 K Sbjct: 699 K 699 >gi|71276421|ref|ZP_00652697.1| Excinuclease ABC, B subunit [Xylella fastidiosa Dixon] gi|71900500|ref|ZP_00682630.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1] gi|170730969|ref|YP_001776402.1| excinuclease ABC subunit B [Xylella fastidiosa M12] gi|238687942|sp|B0U4J3|UVRB_XYLFM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71162737|gb|EAO12463.1| Excinuclease ABC, B subunit [Xylella fastidiosa Dixon] gi|71729740|gb|EAO31841.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1] gi|167965762|gb|ACA12772.1| excinuclease ABC subunit B [Xylella fastidiosa M12] Length = 669 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ + Y PSGDQPAA+ +L+ H+ Q+LLGVTGSGKT+T+A V+E +Q+P +VM Sbjct: 4 LFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT++LL R+D +VV++VS IYG+G+ E Y + + L +G+ +EQ++L+ L + QY R Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ ++RG+FRV G+ +++FP+ E A R+ +F +IE +S F PLTGQ +R ++ + Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY T R +A+ IK+ELK L L +L+EAQRL QR +DLEM+ G C Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEEW P +I VSATPGS+E + G ++E ++RPTGL+DP + Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR TQV+D+ +IN + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+ Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS +SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735 R+V + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV I +++ D Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603 Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + ++ + A +L++ + A +K L +QM+ A +L FE+AARIRD+I+RL Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKMLEQQMYQHARDLEFEDAARIRDQIQRL 663 Query: 794 KSS 796 + + Sbjct: 664 REA 666 >gi|21243355|ref|NP_642937.1| excinuclease ABC subunit B [Xanthomonas axonopodis pv. citri str. 306] gi|23822294|sp|Q8PJB1|UVRB_XANAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|21108901|gb|AAM37473.1| excinuclease ABC subunit B [Xanthomonas axonopodis pv. citri str. 306] Length = 673 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +QRP +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQRPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +E+ + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ +D Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRHVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|269467817|gb|EEZ79569.1| excinuclease ABC subunit B [uncultured SUP05 cluster bacterium] Length = 663 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/658 (56%), Positives = 492/658 (74%), Gaps = 1/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P+GDQP AI L+ G+++ EK Q LLGVTGSGKTFT+A VI+ +R +++MA Sbjct: 5 FQLESQFSPTGDQPQAIKALVDGVNAGEKFQTLLGVTGSGKTFTLANVIKQTKRASLIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSINEQI++MR Sbjct: 65 PNKTLAAQLYSEMKEFFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINEQIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER+D I+++SVS IYG+G +SY QM++ L +G+ Q+E+LS L + QY R Sbjct: 125 SATKSLLERDDVIIIASVSAIYGLGDPDSYMQMLLHLSVGEVTNQREILSRLSQMQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++RG FRV G+ I+IFP+ E+ A R+ MF ++IE I F PLTG+K+++++ I IY Sbjct: 185 DVTLMRGHFRVKGEVIDIFPADSEEQAIRIEMFDDEIEAIYWFDPLTGEKLKSLQRITIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ + + IK ELK+R EL +L+E QRL QR+ D+EM+ G C Sbjct: 245 PQTHYVTPKSKILNTLDDIKAELKVRRKELLSLNKLVEEQRLTQRVKMDIEMMRELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GE PPTL +Y+P+++L+ +DESHVT+ QI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRKSGEAPPTLMDYLPDNALVILDESHVTVSQIGGMYKGDRARKTTLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I+VSATP ++ELE +I EQ++RPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLKFNEFEDRAHQCILVSATPAAYELE-VSNVIAEQVVRPTGLLDPEID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRM+E L++YL + ++VRY+HS++ T+E Sbjct: 424 IRPVDTQVDDLLSEIHKCVKVGERVLVTTLTKRMSEQLSDYLNDHGVKVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN + ILYAD IT S+Q A+DET+RRR+KQ +NKKHNI P+ V + I+ ++D + Sbjct: 544 NVNGRAILYADRITGSMQRAMDETSRRRKKQEAYNKKHNITPRGVVKPIINILDTDITSQ 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 N+ + Q LS + +K+L KQM+ A L FE+AA +R++IK LK + Sbjct: 604 EDDDNMVNENIQRQLSPVQLVKEIKALEKQMYTFAGELKFEKAADVRNQIKLLKDGQF 661 >gi|90021398|ref|YP_527225.1| excinuclease ABC subunit B [Saccharophagus degradans 2-40] gi|89950998|gb|ABD81013.1| Excinuclease ABC subunit B [Saccharophagus degradans 2-40] Length = 666 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/662 (56%), Positives = 488/662 (73%), Gaps = 7/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++++ Y P+GDQP AI L+KGI + Q LLGVTGSGKTFT+A VIE + RP +VM Sbjct: 4 LFKVKSKYTPAGDQPTAIEGLVKGIEAGLAHQTLLGVTGSGKTFTIANVIERIDRPTLVM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+N+ I++MR Sbjct: 64 AHNKTLAAQLYGEFKDFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNDHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D IVV++VS IYG+G ESY +MI+ L GD+++Q+++L L + QY R Sbjct: 124 LSATKALMERKDAIVVATVSAIYGLGDPESYLKMILHLNRGDTIDQRQILRRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI RGT+RV GD I+IFP+ E A RV +F +++ +S F PLTG+ R V + Sbjct: 184 NDIDFQRGTYRVRGDVIDIFPADSELEALRVELFDEEVDNLSIFDPLTGEVFRKVPRFTV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y SHYVTPR + A+ IKEEL RL +L + +L+EAQRLEQR YDLEM++ G C Sbjct: 244 YPKSHYVTPRNKIIDAIDEIKEELAERLQQLRENDKLVEAQRLEQRTRYDLEMMQELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P ++LL +DESHVT+PQI MY+GD RK TL E Sbjct: 304 NGIENYSRYLSGRDSGEPPPTLFDYLPAEALLVIDESHVTVPQIGAMYKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RF+EW P I VSATPG +E E QG +VEQ++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPMRFDEWEARAPQMIFVSATPGKYEAEH-QGQVVEQVVRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A +QV+D EI R+L+TVLTKRMAEDLT+YL E +RVRY+HS++ T+ Sbjct: 423 EVRPATSQVDDAMSEITKRVALEERVLITVLTKRMAEDLTDYLQEHGVRVRYLHSDIDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLR+G+FDVLVGINLLREGLD+PE LVAI DADKEGFLRS SLIQTIGRAA Sbjct: 483 ERVEIIRDLRIGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYA+ IT S++ AIDET RRR+KQ++HN+KH I P + + I ++++ Sbjct: 543 RNVNGKAILYAERITDSMRRAIDETERRRQKQIDHNEKHGITPIGITKSIADIMEGARAP 602 Query: 740 DAATTN---ISIDAQQLSLSKKKGKAHLKSLR---KQMHLAADNLNFEEAARIRDEIKRL 793 + +++ ++ + + K K+++ K M AA +L FE+AA++RD+I L Sbjct: 603 GSKSSSRKRVADKTKDYEVDMNSSKDIWKTIQVMEKDMFQAAKDLEFEKAAQLRDKINSL 662 Query: 794 KS 795 K+ Sbjct: 663 KA 664 >gi|254515031|ref|ZP_05127092.1| excinuclease ABC, B subunit [gamma proteobacterium NOR5-3] gi|219677274|gb|EED33639.1| excinuclease ABC, B subunit [gamma proteobacterium NOR5-3] Length = 672 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/668 (55%), Positives = 484/668 (72%), Gaps = 10/668 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI L++GIH+ Q LLGVTGSGKTFTMA VIE +QRP IVMA Sbjct: 5 FKVNSPFKPAGDQPMAIKALVEGIHAGLAAQTLLGVTGSGKTFTMAHVIEQLQRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDY+QPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYFQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER DCIVV++VS IYG+G +SY +M++ + G+ ++Q++LL L + QY R Sbjct: 125 SATKALLERKDCIVVATVSAIYGLGDPKSYFKMVMHVSRGEIIDQRQLLRHLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV GD I++FP+ E A R+ +F ++E IS F PLTG I V I IY Sbjct: 185 DIDFSRGTYRVRGDVIDVFPAEAEAEAVRIELFDEEVENISLFDPLTGVIIAKVPRITIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVT R T+ A+++I+ EL+ R+ +L+ +L+EAQRL QR YD+EM+ G CQ Sbjct: 245 PKTHYVTSRDTMLNAIEHIEVELEERVKQLKSVEKLVEAQRLSQRTRYDIEMIRELGYCQ 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL+GR PGE PPTL+EY+P+D+L+ +DESH +IPQI MY+GD RK TL EY Sbjct: 305 GVENYSRYLSGRGPGEAPPTLYEYLPDDALVIIDESHASIPQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW L P + VSATPG +E E G +VEQ++RPTGL DP +E Sbjct: 365 GFRLPSALDNRPLRFEEWENLLPQAVFVSATPGPYEAEHA-GQVVEQVVRPTGLTDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+++ EI+ + G R+L+T LTKRM+EDLTEYL E ++RVRY+HS++ T+E Sbjct: 424 IRPATTQVDNLLGEIHKTVEMGDRVLVTTLTKRMSEDLTEYLAEHDVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGR AR Sbjct: 484 RVEIIRDLRLGHFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRGAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735 N+ + ILYAD IT S+Q AIDET RRR+KQ+ N+ +NI P V + + ++++ P Sbjct: 544 NLRGRAILYADKITGSMQRAIDETDRRRKKQVAFNEANNITPVGVIKSVQDIMEGARRMP 603 Query: 736 ILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + A ++ + L LS L + QMH A NL FE+AA +RD++ Sbjct: 604 TKAKSKGQKVAEETLAFSQELLKLSPTALARRLDKMESQMHEHAKNLEFEQAAALRDQLT 663 Query: 792 RLKSSPYF 799 +K + Sbjct: 664 EIKQQAFI 671 >gi|307261128|ref|ZP_07542805.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869158|gb|EFN00958.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 673 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPVDGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPGS+ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGSYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|190149976|ref|YP_001968501.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263304|ref|ZP_07544922.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915107|gb|ACE61359.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871366|gb|EFN03092.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 673 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/661 (56%), Positives = 491/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H+I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|166712575|ref|ZP_02243782.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzicola BLS256] Length = 673 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKTA 670 >gi|285018639|ref|YP_003376350.1| excinuclease ABC subunit b protein [Xanthomonas albilineans GPE PC73] gi|283473857|emb|CBA16359.1| probable excinuclease abc subunit b protein [Xanthomonas albilineans] Length = 672 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/664 (55%), Positives = 488/664 (73%), Gaps = 8/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AI +L+ G + Q LLGVTGSGKT+T+A V++A+Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPQAIEKLVAGFEAGLAKQTLLGVTGSGKTYTIANVVQAIQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKAFFPSNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D +VV++VS IYG+G+ E Y + + L IG+ +EQ++L+ L QY R Sbjct: 125 AATKTLLSRRDALVVATVSAIYGLGAPEDYLSLRLILSIGEHIEQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG+FRV G+ I++FP+ + A R+ +F D+E+++ F PLTG+ +R ++ IY Sbjct: 185 EYELHRGSFRVRGEVIDVFPAESDSEALRIELFDGDVEQLALFDPLTGETLRKLQRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IK ELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKLELKQRLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ GEPPPTLF+Y+P D+LL VDESHVT+PQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAAGEPPPTLFDYLPPDALLVVDESHVTVPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPQVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ +INL G R+L+T LTKRMAE+LTEYL E ++VRY+HS++ T+E Sbjct: 425 IRPVATQVDDLLSQINLRVADGDRVLVTTLTKRMAENLTEYLGEHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N H I P+SV I+++++ Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETGRRREKQVEYNLAHGITPKSVARPIVDILEGARESA 604 Query: 741 AATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A + A+++ +L + A LK+L ++M+ A +L FE+AAR+RD++K+ Sbjct: 605 AEAKSGKGKARRVTEEPADYRALEPAEIAARLKALEQKMYQHARDLEFEDAARVRDQMKK 664 Query: 793 LKSS 796 L+ + Sbjct: 665 LRDT 668 >gi|165976082|ref|YP_001651675.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876183|gb|ABY69231.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 673 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|325924713|ref|ZP_08186151.1| Excinuclease ABC subunit B [Xanthomonas perforans 91-118] gi|325544919|gb|EGD16264.1| Excinuclease ABC subunit B [Xanthomonas perforans 91-118] Length = 673 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVTNFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +E+ + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD IT+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ +D Sbjct: 545 NLRGKAILYADKITRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|149927877|ref|ZP_01916128.1| excinuclease ABC subunit B [Limnobacter sp. MED105] gi|149823499|gb|EDM82730.1| excinuclease ABC subunit B [Limnobacter sp. MED105] Length = 687 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/655 (57%), Positives = 488/655 (74%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI +L++G++ E Q LLGVTGSGKTFTMA VI RPA+V+A Sbjct: 13 FELYQPYSPAGDQPTAIEKLVEGVNDGEVFQTLLGVTGSGKTFTMANVIAQTGRPALVLA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 73 PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VSCIYGIG Y MI+ ++ GD + Q+++L L+ QYKR Sbjct: 133 SATKSLLERRDTIIVGTVSCIYGIGDPSDYHAMILSIRHGDKLSQRDILKRLIAMQYKRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+I+++P+ ++A R+ +F ++I+ I F PLTG+ + + IY Sbjct: 193 DLDFTRGTFRVRGDTIDVYPAEHSELAVRIDLFDDEIDGIQLFDPLTGKIRQKLPRFTIY 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IKEEL+ +L K G+L+EAQRLEQR +DLEML G C+ Sbjct: 253 PSSHYVTPRATVLRAIETIKEELREQLDFFVKTGKLVEAQRLEQRTRFDLEMLAELGFCK 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++G PGEPPPTL +Y+P+D L+ +DESHVTI Q+ GMYRGD RK TL + Sbjct: 313 GIENYSRHMSGAAPGEPPPTLIDYLPKDGLMIIDESHVTIGQLGGMYRGDRSRKETLVNF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRFEE+ T+ VSATP ++E E G +VEQ++RPTGL+DP +E Sbjct: 373 GFRLPSAMDNRPLRFEEFESKMRQTVFVSATPSNYEKEHS-GQVVEQVVRPTGLIDPVIE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ + G R+L+T LTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 432 VRPATTQVDDLLSEIHERTRAGDRVLVTTLTKRMAEDLTDYLSDNGVRVRYLHSDIDTVE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 492 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD +T S++LAI ETTRRR KQ+E N ++ I P+ V ++I E+ID + + Sbjct: 552 NLNGKAILYADRVTNSMELAIGETTRRRNKQIEFNTENGITPRGVNKQIKELIDGVFDPN 611 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ + A +++ L +K+ +K L K M A NL FE+AA+ RD++ LK Sbjct: 612 ASKQRKADKAMEVAPLGEKQLAKEIKRLEKLMLDHAKNLEFEKAAQARDQLGLLK 666 >gi|330829445|ref|YP_004392397.1| excinuclease ABC subunit B [Aeromonas veronii B565] gi|328804581|gb|AEB49780.1| excinuclease ABC subunit B [Aeromonas veronii B565] Length = 670 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/666 (55%), Positives = 486/666 (72%), Gaps = 14/666 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + + P+GDQP AIAQLL GI S Q LLGVTGSGKTFTMA VI + RP +++ Sbjct: 4 LFKLASQFQPAGDQPTAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMIL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D ++V+SVS IYG+G ++Y M++ LK+GD + Q+++L L + QY R Sbjct: 124 LSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDVINQRDILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ RGTFRV G+ I+I+P+ + +A RV +F ++E +S+F PLTG + V I Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY TPR T+ A+++IKEEL+ R +L +L+E QR+ QR +D+EM++ G C Sbjct: 244 YPKTHYATPRETILGAIEHIKEELRSRREQLLSLNKLVEEQRISQRTQFDMEMMQELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 304 SGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ L P T+ VSATPG +ELE+ G +V+Q++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+ Sbjct: 424 EVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLAEHDVKVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KVILY DTIT S+++AI+ET RRR Q HN KH I P+ + + I +V+D Sbjct: 544 RNLNGKVILYGDTITNSMKVAIEETERRRALQHAHNLKHGITPKGLNKSIGDVMD----M 599 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRDE 789 + T ++ +G+ H++S + +QM A +L FE+AA +RD+ Sbjct: 600 GGSRTAGKPGKGMRKAAEPQGEYHVRSASEIAKEIKRMEEQMFQHARDLEFEQAAALRDQ 659 Query: 790 IKRLKS 795 I++L+S Sbjct: 660 IQQLRS 665 >gi|331007859|ref|ZP_08330951.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC1989] gi|330418330|gb|EGG92904.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC1989] Length = 666 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/664 (56%), Positives = 493/664 (74%), Gaps = 16/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P+GDQP AI L+KGI + Q LLGVTGSGKTFT+A V++ + RP IVM Sbjct: 5 FNVVSDYTPAGDQPKAIESLIKGIRNGLAHQTLLGVTGSGKTFTIANVVQEINRPTIVMV 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D I+V++VS IYG+G E+Y +M++ + G+ V+Q+++L L + QY R Sbjct: 125 SATKALMERTDTIIVATVSAIYGLGDPEAYLKMVLHIDRGEKVDQRDILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R T+RV GD I++FP+ + A R+ +F +++E+++ F PLTG+ ++ + IY Sbjct: 185 DAVFQRATYRVRGDVIDVFPADSDREALRIELFDDEVEQLTLFDPLTGESLQKMPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A+++IK E K RL +L +L+EAQRLEQR+ YD+EM++ G C Sbjct: 245 PKSHYVTPRSRILEAIEHIKAEAKERLEQLRSVNKLVEAQRLEQRVKYDVEMMQELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL+GR+PG PPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GVENYSRYLSGRDPGLPPPTLFDYLPPDALLVLDESHVTVPQIGGMYRGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW L P I VSATPG++E E IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEWEELAPQMIFVSATPGNYEAEHA-AQIVEQVVRPTGLIDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IRSA TQV++ EI RIL+TVLTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 424 IRSADTQVDEAMSEIAKRVAVDERILITVLTKRMAEDLTDYLSDHGVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LV I+DADKEGFLRS SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVMIMDADKEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 ++N K IL+A+ IT S+Q AIDET RRR KQ+ HNK+H I P VK+KI ++++ ++ Sbjct: 544 HLNGKAILFANKITNSMQRAIDETDRRRTKQVAHNKEHGITPTGVKKKIADIMEGAVVVG 603 Query: 739 --------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 E A+ N+ + + SL +K + L ++M+ AA +L+FE AA +RD+I Sbjct: 604 KGKRGKISEKEASYNLHPELEGKSLKQK-----IALLDEKMYQAAKDLDFERAASLRDQI 658 Query: 791 KRLK 794 K+LK Sbjct: 659 KQLK 662 >gi|187927971|ref|YP_001898458.1| excinuclease ABC subunit B [Ralstonia pickettii 12J] gi|187724861|gb|ACD26026.1| excinuclease ABC, B subunit [Ralstonia pickettii 12J] Length = 696 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/683 (55%), Positives = 496/683 (72%), Gaps = 15/683 (2%) Query: 121 KIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176 ++ +PH + SK +TF FQ+ Y P+GDQP AI QL++ I Q LLGV Sbjct: 6 QVPSPH------DESKFVTFEGSPFQLYQPYPPAGDQPEAIRQLVENIGDGLSYQTLLGV 59 Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236 TGSGKTFTMA VI + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEA Sbjct: 60 TGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEA 119 Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296 YVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ Sbjct: 120 YVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILT 179 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L+ GD V Q+++++ L+ QY R + RGTFRV GD+++IFP+ ++A R+ +F ++ Sbjct: 180 LRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDE 239 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 +E + F PLTG+ + + +Y +SHYVTPR T+ A++ IK EL+ RL KE +L Sbjct: 240 VESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKL 299 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 +EAQRLEQR +DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DES Sbjct: 300 VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDES 359 Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 HV I Q++GMY GD RK TLAEYGFRLPS +DNRPL+F E+ VSATPG +E Sbjct: 360 HVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYE 419 Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596 + +VEQ++RPTGLVDP +E+R A TQV+D+ EI++ + G R+L+T LTKRMAE Sbjct: 420 KKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVEAGERVLVTTLTKRMAE 479 Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 LTE+L E ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAI Sbjct: 480 QLTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAI 539 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 LDADKEGFLR++ SLIQTIGRAARNVN ILYAD +T S++ AI ET RRR KQ+ HN+ Sbjct: 540 LDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIGETERRRAKQIAHNE 599 Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMH 772 H I P+ V ++I ++ID + D A + AQ+ + +S+K+ +K L KQM Sbjct: 600 AHGITPRGVVKRIKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQASKEIKRLEKQML 658 Query: 773 LAADNLNFEEAARIRDEIKRLKS 795 A NL FE+AA +RD++ +LKS Sbjct: 659 DHAKNLEFEKAAAVRDQLAKLKS 681 >gi|170718533|ref|YP_001783742.1| excinuclease ABC subunit B [Haemophilus somnus 2336] gi|168826662|gb|ACA32033.1| excinuclease ABC, B subunit [Haemophilus somnus 2336] Length = 677 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/665 (57%), Positives = 488/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AIA+L + ++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 9 FILHSDFQPAGDQPQAIAKLAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 69 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G V+Q+++L+ L + QY R Sbjct: 129 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG + IY Sbjct: 189 DQVFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGANFGAIPRYTIY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL+ R L RL+E QRL QR +D+EM+ G C Sbjct: 249 PKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELGYCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 309 GIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP VE Sbjct: 369 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A+Q R+L+T LTKRMAEDLT+YL E IRVRY+HS++ T+E Sbjct: 429 IRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS+Q AIDET RRREKQ+++N + + PQ++ +K+ E++D + Sbjct: 549 NLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGVVPQALNKKVGELLD---IGQ 605 Query: 741 AATTNISIDAQQLSL-----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A T A+ ++ S K + +K L +QM+ A +L FE+AA IRD+ Sbjct: 606 GAITKSKTKARAKTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAAIRDQ 665 Query: 790 IKRLK 794 ++ LK Sbjct: 666 LQELK 670 >gi|53729175|ref|ZP_00134015.2| COG0556: Helicase subunit of the DNA excision repair complex [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208147|ref|YP_001053372.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae L20] gi|189037973|sp|A3N031|UVRB_ACTP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|126096939|gb|ABN73767.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 673 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKVEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|307245520|ref|ZP_07527607.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254476|ref|ZP_07536312.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258934|ref|ZP_07540665.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853579|gb|EFM85797.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862526|gb|EFM94484.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866958|gb|EFM98815.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 673 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +L+ Sbjct: 608 PKRGKQAVKVEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRDKIGQLR 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|307256686|ref|ZP_07538465.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864734|gb|EFM96638.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 673 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGALIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 T 668 >gi|198283103|ref|YP_002219424.1| excinuclease ABC subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667550|ref|YP_002425332.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247624|gb|ACH83217.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519763|gb|ACK80349.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 675 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/659 (56%), Positives = 489/659 (74%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ + P GDQP AI L+ G+ + E Q LLGVTGSGKTFTMA VI RPAI+MA Sbjct: 5 FILESSFPPQGDQPEAIRLLVNGLAAGEYFQTLLGVTGSGKTFTMANVIAITHRPAIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ I++MR Sbjct: 65 PNKTLAAQLYAEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY MI+ L+ +++Q+ +L L + QY R Sbjct: 125 SATKALLERPDVIIVATVSAIYGLGDPASYHGMILHLRESSTMDQRAILKRLAEMQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV GD I+I+P+ ED A R+ +FG+++E IS F PLTG+ I + IY Sbjct: 185 PLEMKRGTFRVNGDVIDIWPAESEDEAVRIELFGDELERISLFDPLTGKTITRLPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A+ IK+EL+ RL +L + +L+EAQRLEQR +DLEM+ G C Sbjct: 245 PKSHYVTPRETILAALDAIKDELRARLEDLRRANKLVEAQRLEQRTRFDLEMMAELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+ PPTL +Y+P+D+LLF+DESHVT+PQ GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRVPGQAPPTLMDYLPKDALLFMDESHVTVPQFGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ L P T+ +SATPG +ELE G +VEQ++RPTGLVDP V+ Sbjct: 365 GFRLPSALDNRPLTFPEFESLMPQTVFISATPGPYELEHS-GQVVEQVVRPTGLVDPAVD 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A+ QV+D+ EIN+ + G RIL+T LTKRMAEDLT+YL+E I+ RY+HS+++T+E Sbjct: 424 IRPAKGQVDDLISEINIVVRNGWRILVTTLTKRMAEDLTDYLHELGIKCRYLHSDIETVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ + ILYAD+ITKS+ AI ET RRREKQL+ N H I P+ + + + ++I+ + + Sbjct: 544 NLHGRAILYADSITKSMARAIAETDRRREKQLQFNAAHGITPRGIVKPVSDMIEGVYRRN 603 Query: 741 ----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + D + L + K +K L + M+ A NL FE+AA +RD+IK+L++ Sbjct: 604 VQPAAHAAEKNADYRVLRDPQAVAK-KIKELEEAMYRHARNLEFEQAAALRDDIKKLET 661 >gi|78048368|ref|YP_364543.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036798|emb|CAJ24491.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 697 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 29 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 89 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 149 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 209 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 269 PKTHYATTRERTLSAVDTIKEELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCN 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 329 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +E+ + G + E ++RPTGL+DP VE Sbjct: 389 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 448 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 449 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 508 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 509 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 568 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD IT+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ +D Sbjct: 569 NLRGKAILYADKITRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 627 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 628 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 685 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 686 DQIQKLKAA 694 >gi|15837569|ref|NP_298257.1| excinuclease ABC subunit B [Xylella fastidiosa 9a5c] gi|21542296|sp|Q9PER1|UVRB_XYLFA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|9105897|gb|AAF83777.1|AE003935_3 excinuclease ABC subunit B [Xylella fastidiosa 9a5c] Length = 669 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ + Y PSGDQP A+ +L+ H+ Q+LLGVTGSGKT+T+A V+E +Q+P +VM Sbjct: 4 LFQLVSSYSPSGDQPTAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT++LL R+D +VV++VS IYG+G+ E Y + + L +G+ +EQ++L+ L + QY R Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ ++RG+FRV G+ +++FP+ E A R+ +F +IE +S F PLTGQ +R ++ + Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRYSV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY T R +A+ IK+ELK L L +L+EAQRL QR +DLEM+ G C Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEEW P +I VSATPGS+E + G ++E ++RPTGL+DP + Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR TQV+D+ +IN+ + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+ Sbjct: 424 EIRPVATQVDDLISQINVCIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS +SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735 R+V + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV I +++ D Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603 Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + ++ + A +L++ + A +K L +QM+ A +L FE+AARIRD+I+RL Sbjct: 604 VEVKSKGKGRRVDEVPADYCALNQAEIAAQMKVLEQQMYQHARDLEFEDAARIRDQIQRL 663 Query: 794 KSS 796 + + Sbjct: 664 REA 666 >gi|294624228|ref|ZP_06702943.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601472|gb|EFF45494.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 673 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +E+ + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ +D Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|325919999|ref|ZP_08181978.1| Excinuclease ABC subunit B [Xanthomonas gardneri ATCC 19865] gi|325549510|gb|EGD20385.1| Excinuclease ABC subunit B [Xanthomonas gardneri ATCC 19865] Length = 673 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 494/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A VI+ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVIQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRKLIRHLSDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IK+ELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKDELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRM+E+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVQRPISDIMEGA-RED 603 Query: 741 AATTNI-------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA ++D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKAGKGRSKSRQIAEDTVDYRAMGPAQIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|84624686|ref|YP_452058.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123521417|sp|Q2P0Z3|UVRB_XANOM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|84368626|dbj|BAE69784.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 673 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L IG+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQSKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ EI+ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGMQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKTA 670 >gi|28199607|ref|NP_779921.1| excinuclease ABC subunit B [Xylella fastidiosa Temecula1] gi|182682349|ref|YP_001830509.1| excinuclease ABC subunit B [Xylella fastidiosa M23] gi|32130270|sp|Q87AT6|UVRB_XYLFT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238691089|sp|B2I8F9|UVRB_XYLF2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|28057722|gb|AAO29570.1| excinuclease ABC subunit B [Xylella fastidiosa Temecula1] gi|182632459|gb|ACB93235.1| excinuclease ABC, B subunit [Xylella fastidiosa M23] gi|307578632|gb|ADN62601.1| excinuclease ABC subunit B [Xylella fastidiosa subsp. fastidiosa GB514] Length = 669 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ + Y PSGDQPAA+ +L+ H+ Q+LLGVTGSGKT+T+A V+E +Q+P +VM Sbjct: 4 LFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT++LL R+D +VV++VS IYG+G+ E Y + + L +G+ +EQ++L+ L + QY R Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ ++RG+FRV G+ +++FP+ E A R+ +F +IE +S F PLTGQ +R ++ + Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY T R +A+ IK+ELK L L +L+EAQRL QR +DLEM+ G C Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEEW P +I VSATPGS+E + G ++E ++RPTGL+DP + Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR TQV+D+ +IN + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+ Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS +SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735 R+V + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV I +++ D Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603 Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + ++ + A +L++ + A +K L ++M+ A +L FE+AARIRD+I+RL Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQKMYQHARDLEFEDAARIRDQIQRL 663 Query: 794 KSS 796 + + Sbjct: 664 REA 666 >gi|332140736|ref|YP_004426474.1| excinuclease ABC subunit B [Alteromonas macleodii str. 'Deep ecotype'] gi|327550758|gb|AEA97476.1| excinuclease ABC subunit B [Alteromonas macleodii str. 'Deep ecotype'] Length = 671 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/662 (55%), Positives = 491/662 (74%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L+ G+ S Q LLGVTGSGKTFTMA VI+ +QRP +++A Sbjct: 5 FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G ESY +M++ L+ GD+++Q+++L L + QYKR Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD I+IFP+ E A RV +F ++I++IS F PLTG ++V ++ Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+++IK+EL R +L++ +L+E QR+ QR +D+EM+ G C Sbjct: 245 PKTHYVTPREKILNAIEHIKDELGGRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ Q+ MYRGD RK TL E+ Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + P TI VSATPG +EL + +G IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELRKTEGEIVEQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI + R+L+T LTKRMAEDL+EYL E ++VRY+HS++ T+E Sbjct: 425 VRPVATQVDDVLSEIKKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N + ILYADTITKS++ A+DET RRREKQ+ HN+ +NI P + + I +++D L E Sbjct: 545 HINGRAILYADTITKSMKKAMDETERRREKQMAHNEANNITPMRLNKPITDIMD--LGES 602 Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A + + +++ K K KA + L KQM A L FE+AA +RD+I+ Sbjct: 603 AHPASGKVRLRKVEEKKSKQKAASATELMDQITELEKQMFEYARELEFEKAASLRDDIEA 662 Query: 793 LK 794 L+ Sbjct: 663 LR 664 >gi|117621062|ref|YP_856963.1| excinuclease ABC subunit B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562469|gb|ABK39417.1| excinuclease ABC, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 670 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/666 (55%), Positives = 487/666 (73%), Gaps = 14/666 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ + + P+GDQP AIAQLL GI S Q LLGVTGSGKTFTMA VI + RP +++ Sbjct: 4 LFQLASQFQPAGDQPRAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMIL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPDNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D ++V+SVS IYG+G ++Y M++ LK+GD + Q+++L L + QY R Sbjct: 124 LSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDLINQRDILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ RGTFRV G+ I+I+P+ + +A RV +F ++E +S F PLTG + V I Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSLFDPLTGAIEQTVVRYTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY TPR T+ A+++IKEELK R +L G+L+E QR+ QR +D+EM++ G C Sbjct: 244 YPKTHYATPRETILGAIEHIKEELKSRREQLLSLGKLVEEQRISQRTQFDIEMMQELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 304 SGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ L P T+ VSATPG +ELE+ G +V+Q++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI R+L+T LTKRMAEDLTEYL + +RVRY+HS++ T+ Sbjct: 424 EVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLADHEVRVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KVILY DTIT S+Q+AI+ET RRR Q HN +H I P + + + +V+D + Sbjct: 544 RNLNGKVILYGDTITNSMQVAIEETERRRALQHAHNLEHGITPTGLNKSVGDVMD---MG 600 Query: 740 DAATTNISIDAQQLSLSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIRDE 789 + + S + + ++ +G+ H +K + +QM A +L FE+AA +RD+ Sbjct: 601 GSRSAGKSGRGSRKA-AEPQGEYHARSASEISKEIKRMEEQMFQHARDLEFEQAAALRDQ 659 Query: 790 IKRLKS 795 I+RL++ Sbjct: 660 IQRLRN 665 >gi|251792934|ref|YP_003007660.1| excinuclease ABC subunit B [Aggregatibacter aphrophilus NJ8700] gi|247534327|gb|ACS97573.1| hypothetical protein NT05HA_1213 [Aggregatibacter aphrophilus NJ8700] Length = 697 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/673 (55%), Positives = 490/673 (72%), Gaps = 15/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D++PSGDQP AIA+L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 27 FILHSDFNPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 87 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G + Q+++L+ L + QY R Sbjct: 147 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A R+ +F ++IE +S F PLTG + +Y Sbjct: 207 DQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGTIPRFTVY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 267 PKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNELGYCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 327 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 387 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPQIE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 447 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ ++N+ H I PQ++ +K+ E++D + Sbjct: 567 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEVHGIVPQALNKKVGELLD---IGQ 623 Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + + Q+ L S K+ + +K L +QM+ A +L FE+AA +RD Sbjct: 624 GANQKVKANKQRGKMVAEPTALYALPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVRD 683 Query: 789 EIKRLKSSPYFQG 801 ++++L+ S G Sbjct: 684 QLQQLRESFMLSG 696 >gi|88797993|ref|ZP_01113580.1| excinuclease ABC subunit B [Reinekea sp. MED297] gi|88779190|gb|EAR10378.1| excinuclease ABC subunit B [Reinekea sp. MED297] Length = 674 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/661 (55%), Positives = 488/661 (73%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L+ G+++ Q LLGVTGSGKT+TMAKV+EA+QRP IVM Sbjct: 4 FKVVSKYEPAGDQPAAITKLVDGLNAGLAAQTLLGVTGSGKTYTMAKVVEAVQRPTIVMV 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP +DT+I+K+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIDKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V++VS IYG+GS +SY +M++ L+ GD ++Q+ +L L QY+R Sbjct: 124 SATKALLERRDTLIVATVSAIYGLGSPDSYLKMVLHLRKGDMIDQRGILRQLADLQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGT+RV GD ++IFP+ E A RV +F ++IE++S F PLTG+ ++ + IY Sbjct: 184 DTDFGRGTYRVRGDILDIFPAESELEAIRVELFDDEIEKLSLFDPLTGEVLQKLNRYTIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A + I+ ELK RL E + RL+EAQRLEQR YDLEM+ G C Sbjct: 244 PKTHYVTPRETILNACEQIEVELKDRLKVFESDNRLVEAQRLEQRTRYDLEMMRELGFCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L+G PGE PPTL+ Y+P D+L+F+DESHV+IPQI MY+GD RK TL EY Sbjct: 304 GVENYSRFLSGAKPGEAPPTLYSYLPADTLMFIDESHVSIPQIGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW + P ++ VSATPG +E E Q V+Q++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLKFEEWERMAPQSVYVSATPGKYEAEHSQQ-TVDQVVRPTGLVDPIIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV +EI L + R+L+T LTKRMAEDLT+YL++ IRVRY+HS++ T+E Sbjct: 423 VRPATTQVDDVLEEIRLRVEVNERVLITTLTKRMAEDLTDYLHDNGIRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD +T S++ AI+ET RRREKQ+ HN +NI PQ++ + + ++ID Sbjct: 543 NLNGKAILYADRMTGSMERAIEETERRREKQIAHNTANNITPQALNKAVTDIIDGTPQAP 602 Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ + ++ + +S + + +MH A +L FEEAA +RD Sbjct: 603 GRKGKLARNKKKVEHITGEEAKSFMQMSAAELSKEITRTEDRMHKLARDLKFEEAAGLRD 662 Query: 789 E 789 + Sbjct: 663 Q 663 >gi|120598965|ref|YP_963539.1| excinuclease ABC subunit B [Shewanella sp. W3-18-1] gi|120559058|gb|ABM24985.1| Excinuclease ABC subunit B [Shewanella sp. W3-18-1] gi|319426521|gb|ADV54595.1| excinuclease ABC, B subunit [Shewanella putrefaciens 200] Length = 668 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/660 (57%), Positives = 483/660 (73%), Gaps = 5/660 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQPAAI +L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPAAITKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GDS+ Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDSLGQRDMLKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGTFRV G+ I+IFP+ + A RV +F ++IE +SEF PLTGQ I+ + Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A + IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKILEATELIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ +G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSLYELEKSEGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVATQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ AI ET RRREKQ HN K+ I P+ V ++I +V+D Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRREKQRAHNLKNGIVPKGVVKRITDVMDVDDG 603 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D+ + A+ S K A L L K+MH A NL FE+AA +RDE+K L+ Sbjct: 604 RDSKAVYGKV-AEPKSHYHKADAAELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLR 662 >gi|126090180|ref|YP_001041661.1| excinuclease ABC subunit B [Shewanella baltica OS155] gi|126174473|ref|YP_001050622.1| excinuclease ABC subunit B [Shewanella baltica OS155] gi|153000637|ref|YP_001366318.1| excinuclease ABC subunit B [Shewanella baltica OS185] gi|304408666|ref|ZP_07390287.1| excinuclease ABC, B subunit [Shewanella baltica OS183] gi|307305495|ref|ZP_07585243.1| excinuclease ABC, B subunit [Shewanella baltica BA175] gi|125997678|gb|ABN61753.1| Excinuclease ABC subunit B [Shewanella baltica OS155] gi|125999836|gb|ABN63906.1| hypothetical protein Sbal_4543 [Shewanella baltica OS155] gi|151365255|gb|ABS08255.1| excinuclease ABC, B subunit [Shewanella baltica OS185] gi|304352487|gb|EFM16884.1| excinuclease ABC, B subunit [Shewanella baltica OS183] gi|306911798|gb|EFN42223.1| excinuclease ABC, B subunit [Shewanella baltica BA175] Length = 668 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 17/666 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ + Q LLGVTGSGKTFT+A VI+ + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD + Q+++L L + QYK Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I++FP+ E A RV +F ++IE +SEF PLTG I+ + Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A ++IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ +G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ AI ET RRRE+Q HN KH I P+ V ++I +V+D Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603 Query: 739 EDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D+ + DA +LS + L K+MH A NL FE+AA +RD Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELS-------HQIDQLEKKMHEHARNLEFEQAAAMRD 656 Query: 789 EIKRLK 794 E+K L+ Sbjct: 657 EVKHLR 662 >gi|322514289|ref|ZP_08067347.1| excision endonuclease subunit UvrB [Actinobacillus ureae ATCC 25976] gi|322119827|gb|EFX91848.1| excision endonuclease subunit UvrB [Actinobacillus ureae ATCC 25976] Length = 673 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/661 (56%), Positives = 489/661 (73%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEMALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERCEYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKELEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|217973442|ref|YP_002358193.1| excinuclease ABC subunit B [Shewanella baltica OS223] gi|217498577|gb|ACK46770.1| excinuclease ABC, B subunit [Shewanella baltica OS223] Length = 668 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 17/666 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ + Q LLGVTGSGKTFT+A VI+ + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD + Q+++L L + QYK Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I++FP+ E A RV +F ++IE +SEF PLTG I+ + Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A ++IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ +G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ AI ET RRRE+Q HN KH I P+ V ++I +V+D Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603 Query: 739 EDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D+ + DA +LS + L K+MH A NL FE+AA +RD Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELS-------HQIDQLEKKMHEHARNLEFEQAAAMRD 656 Query: 789 EIKRLK 794 E+K L+ Sbjct: 657 EVKHLR 662 >gi|146292950|ref|YP_001183374.1| excinuclease ABC subunit B [Shewanella putrefaciens CN-32] gi|145564640|gb|ABP75575.1| Excinuclease ABC subunit B [Shewanella putrefaciens CN-32] Length = 668 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/660 (56%), Positives = 484/660 (73%), Gaps = 5/660 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQPAAI +L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPAAITKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GDS+ Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDSLGQRDMLQRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGTFRV G+ I+IFP+ + A RV +F ++IE +SEF PLTGQ I+ + Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A + IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKILEATELIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ +G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSLYELEKSEGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVATQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ A++ET RRREKQ HN K+ I P+ V ++I +V+D Sbjct: 544 ARNVNGKVILYADRITNSMAKAMEETDRRREKQRAHNLKNGIVPKGVVKRITDVMDVDDG 603 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D+ + A+ S K A L L K+MH A NL FE+AA +RDE+K L+ Sbjct: 604 RDSKAVYGKV-AEPKSHYHKADAAELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLR 662 >gi|294663891|ref|ZP_06729329.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606338|gb|EFF49551.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 673 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGGTLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +E+ + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ +D Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|222054331|ref|YP_002536693.1| excinuclease ABC, B subunit [Geobacter sp. FRC-32] gi|221563620|gb|ACM19592.1| excinuclease ABC, B subunit [Geobacter sp. FRC-32] Length = 663 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/654 (56%), Positives = 487/654 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L +GI ++ Q+LLGVTGSGKTFTMA +I + RPA+++A Sbjct: 3 FRLSSDYKPRGDQPQAIDELTQGIIRGDRDQVLLGVTGSGKTFTMANIIANINRPALILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+MRH Sbjct: 63 PNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D I+V+SVSCIYGIGS SY +M + GD V + E L LV QY+R Sbjct: 123 SATRSLLTRRDVIIVASVSCIYGIGSPASYQEMHIFFHQGDDVPRDEFLKKLVAIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+FP+H ++ A R+ FG+ +E ISE PL GQ I+ + IY Sbjct: 183 DVDFHRGTFRVRGDIVEVFPAHDDERALRIEFFGDTVEAISEIDPLRGQVIQKLAKCAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + TL+ A++ I+ EL+ R+ ++ LLEAQR+EQR +D+EM+E G CQ Sbjct: 243 PASHYVANKETLDRAIEQIRLELEERIRYFREQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR+ GEPP TL +Y P D +LF+DESH+T+ Q+ GMYRGD RK TL Y Sbjct: 303 GIENYSRHFDGRSAGEPPYTLIDYFPGDFVLFIDESHITVSQVGGMYRGDRSRKETLVNY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ VSATP +EL+Q G++VEQ+IRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLNFQEFTKKLNQTVYVSATPAEYELKQAGGVVVEQVIRPTGLLDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E+ L ++G R+L+T LTKRMAE+LT+Y E I+VRY+HS++ T++ Sbjct: 423 VRPASGQVDDLLHEVRLTVEKGERVLVTTLTKRMAEELTDYYRELGIKVRYLHSDIDTIQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG+FDVLVGINLLREGLDIPE LVAI DADKEGFLRS+ SLIQT GRAAR Sbjct: 483 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTCGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ VI+YAD++T+S+Q ID T++RR+ Q E+N+++NI PQSVK++I +++ + D Sbjct: 543 NLSGCVIMYADSVTRSMQACIDVTSKRRQIQQEYNRENNITPQSVKKQIRNILESVEEHD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ + + ++ K +K LRK+M AA L+FE+AA +RD IK+L+ Sbjct: 603 YVTVPLAAETMEEYVAVKDIPKLVKKLRKEMLAAAKELDFEKAAGLRDRIKKLE 656 >gi|329895722|ref|ZP_08271126.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC3088] gi|328922198|gb|EGG29553.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC3088] Length = 704 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 481/669 (71%), Gaps = 11/669 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA V+E +QRP IVMA Sbjct: 35 FKVESKYKPAGDQPQAIEKLVEGVQAGLASQTLLGVTGSGKTFTMAHVVERLQRPTIVMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N+ I++MR Sbjct: 95 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNDHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER DC+VV++VS IYG+G +SY +M++ + G+ + Q+ELL L + QY R Sbjct: 155 SATKALMERQDCLVVATVSAIYGLGDPKSYFKMVLHVSRGEIINQRELLHQLAELQYTRN 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV GD I+IFP+ E A R+ +F +++ I F PLTG V I I+ Sbjct: 215 DIAFSRGTYRVRGDVIDIFPADSEKEAVRIELFDEEVDNIVLFDPLTGAIEAKVPRITIF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R + A+ I+ EL+ RL +L +L+EAQRL+QR YD+EM+ G CQ Sbjct: 275 PKSHYVTSRDIMLKAIDEIEIELEQRLKQLNDLNKLVEAQRLQQRTRYDIEMIRELGYCQ 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL+GR PG+PPPTLFEY+P+++L+ +DESHVTIPQI GMYRGD RK TL EY Sbjct: 335 GVENYSRYLSGRGPGDPPPTLFEYLPDNALVIIDESHVTIPQIGGMYRGDRSRKETLVEY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW L P I VSATPG++E EQ G +VEQ++RPTGLVDP ++ Sbjct: 395 GFRLPSALDNRPLKFEEWERLVPQAIFVSATPGNYE-EQHAGRVVEQVVRPTGLVDPTID 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ G R+L+T LTKRMAEDLTEYL E I+VRY+HS++ T+E Sbjct: 454 IRPASTQVDDLLQEIHTVRATGQRVLVTTLTKRMAEDLTEYLAEHGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N+ + ILYAD +T S+Q AIDET RRR KQL HN++H I P + + + ++++ Sbjct: 574 NLQGRAILYADKVTGSMQRAIDETERRRTKQLAHNEEHGIKPVGITKSVQDIMEGARRMS 633 Query: 739 --------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A + SL+ +K L +M A NL FE+AA +RD+I Sbjct: 634 TKRNAKGERKVAEVRAAYAQDMASLTPAALSRKIKQLETEMMEHAKNLEFEKAAAVRDQI 693 Query: 791 KRLKSSPYF 799 K + Sbjct: 694 TEYKQFAFM 702 >gi|303252414|ref|ZP_07338580.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247637|ref|ZP_07529679.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648873|gb|EFL79063.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855849|gb|EFM88010.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 673 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +L+ Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRDKIGQLR 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|160875272|ref|YP_001554588.1| excinuclease ABC subunit B [Shewanella baltica OS195] gi|160860794|gb|ABX49328.1| excinuclease ABC, B subunit [Shewanella baltica OS195] gi|315267466|gb|ADT94319.1| excinuclease ABC, B subunit [Shewanella baltica OS678] Length = 668 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 17/666 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ + Q LLGVTGSGKTFT+A VI+ + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD + Q+++L L + QYK Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I++FP+ E A RV +F ++IE +SEF PLTG I+ + Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A ++IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQFLLDNNKLIEAQRIHERVQYDVEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ +G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ AI ET RRRE+Q HN KH I P+ V ++I +V+D Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603 Query: 739 EDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D+ + DA +LS + L K+MH A NL FE+AA +RD Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELS-------HQIDQLEKKMHEYARNLEFEQAAAMRD 656 Query: 789 EIKRLK 794 E+K L+ Sbjct: 657 EVKHLR 662 >gi|332089011|gb|EGI94123.1| excinuclease ABC, B subunit [Shigella boydii 5216-82] Length = 673 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHGLEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|188991070|ref|YP_001903080.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris str. B100] gi|229557971|sp|B0RRD9|UVRB_XANCB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|167732830|emb|CAP51024.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris] Length = 673 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/669 (55%), Positives = 491/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L IG+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603 Query: 741 AATTNIS-------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA D + + ++ GK LK+L ++M+ A +L FE AA+IR Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGK--LKALEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|320178489|gb|EFW53454.1| Excinuclease ABC subunit B [Shigella boydii ATCC 9905] gi|333006897|gb|EGK26393.1| excinuclease ABC, B subunit [Shigella flexneri VA-6] Length = 673 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|255021827|ref|ZP_05293837.1| Excinuclease ABC subunit B [Acidithiobacillus caldus ATCC 51756] gi|254968651|gb|EET26203.1| Excinuclease ABC subunit B [Acidithiobacillus caldus ATCC 51756] Length = 676 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/667 (55%), Positives = 488/667 (73%), Gaps = 7/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + P GDQP AIA+L+ G+ S E Q LLGVTGSGKTFTMA VI QRPAIVMA Sbjct: 5 LSLESVFPPCGDQPVAIAELVDGLASGESFQTLLGVTGSGKTFTMANVIARTQRPAIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 65 PNKTLAAQLYAELRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V++VS IYG+G +Y MI+ L+ GD+++Q+ +L L QY R Sbjct: 125 SATKALLERPDVVIVATVSAIYGLGDPAAYHNMILHLREGDAMDQRAILRRLADMQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + R TFRV GD I+I+P+ ED A RV +FG++IE IS F PLTG+ I + +Y Sbjct: 185 PMELKRSTFRVNGDVIDIWPAESEDEAVRVELFGDEIERISLFDPLTGKTITRLPRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A++ IK+EL+ RL L +E +L+EAQRLEQR +DLEM+ G C Sbjct: 245 PKSHYVTPREQILAAIEQIKDELRERLDVLRRENKLVEAQRLEQRTRFDLEMMAELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL +Y+P ++LLF+DESHVT+PQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTLMDYLPANALLFIDESHVTVPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ L P TI +SATPG +EL + G +VEQ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLMFPEFEALMPQTIFISATPGPYELSRS-GRVVEQVVRPTGLVDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A+ QV+D+ EI+ G R+L+T LTKRMAEDL++YL+E I+ RY+HS+++T+E Sbjct: 424 VRPAKGQVDDLVSEIHAVIASGWRVLVTTLTKRMAEDLSDYLHELGIQCRYLHSDIETVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ + ILYADTIT S+ A++ET RRR KQ+ N +H I P+ + + + ++++ + + Sbjct: 544 NLHGRAILYADTITGSMARAMEETERRRNKQIRFNAEHGITPKGIVKPVADILEGVYRRN 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + + K L + L + MH A NL FE+AA +RD+I+ L++ Sbjct: 604 GSGARTKAAEPTPTYADVKDPRALAKRIRELEETMHRHARNLEFEQAAALRDQIRILEAE 663 Query: 797 PYFQGLD 803 GLD Sbjct: 664 --ILGLD 668 >gi|307545136|ref|YP_003897615.1| excinuclease ABC subunit B [Halomonas elongata DSM 2581] gi|307217160|emb|CBV42430.1| excinuclease ABC subunit B [Halomonas elongata DSM 2581] Length = 673 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/668 (55%), Positives = 482/668 (72%), Gaps = 20/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP+AI L+KG+ + Q LLGVTGSGKTFTMA V+E +QRP IVMA Sbjct: 5 FRLESKFKPAGDQPSAIEGLVKGLEAGLAHQTLLGVTGSGKTFTMANVVERLQRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V SVS IYG+G + Y +M + G+ ++Q+ L L + QY R Sbjct: 125 SATKALLERRDALIVVSVSAIYGLGDPDLYLKMRLHFNRGELIDQRAFLRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGT+RV GD I+IFP+ ED A RV +F ++I++IS F PLTG+ V + IY Sbjct: 185 DMDFKRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIDQISLFDPLTGEVRGKVPRMTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A+ IKEEL RL + + +L+EAQRLEQR YD+EM+ G C Sbjct: 245 PKTHYVTPRETIMGAIDSIKEELAERLAWMRQHDKLVEAQRLEQRSLYDIEMMLELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPT F+Y+P D+LLF+DESHV++PQ+ GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTFFDYLPADALLFIDESHVSVPQVGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+ F+EW + P + VSATPG +E E G +VEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMTFQEWERICPQAVFVSATPGPYEAEHA-GQVVEQVVRPTGLLDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ E+ + R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+E Sbjct: 424 VRPASTQVDDLLSEVRARSAVDERVLVTTLTKRMAEDLTEYLDEHDVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + K +LY D +T S++ AIDET RRR KQ+ HN++H I P++V + ++ LE Sbjct: 544 NAHGKAVLYGDRVTDSMRRAIDETERRRAKQIAHNEEHGITPETVSRSVADI-----LES 598 Query: 741 AATTNISIDAQQL--------------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 A T ++ SLS + + L L M AA NL FEEAAR+ Sbjct: 599 AETPGRKGKGRKSERKVAEGAAIYDPDSLSPAEIQKELTRLEDAMVEAAQNLEFEEAARL 658 Query: 787 RDEIKRLK 794 RD + LK Sbjct: 659 RDRLHELK 666 >gi|328474566|gb|EGF45371.1| excinuclease ABC subunit B [Vibrio parahaemolyticus 10329] Length = 676 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/669 (55%), Positives = 496/669 (74%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R +L + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPIL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ L Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|260914232|ref|ZP_05920705.1| excision endonuclease subunit UvrB [Pasteurella dagmatis ATCC 43325] gi|260631865|gb|EEX50043.1| excision endonuclease subunit UvrB [Pasteurella dagmatis ATCC 43325] Length = 677 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/662 (56%), Positives = 488/662 (73%), Gaps = 8/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI QL++G+ + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G + Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQAGAIINQRQILAQLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDKAVRVELFDDEIERLSLFDPLTGTNFGAVPRYTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IKEEL R L + +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIEKIKEELAERKKFLLENNKLLEEQRITQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRKEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ G I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSNGEIIDQVVRPTGLLDPEIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A+Q R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVAIQVDDLLSEARQRAEQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N+ K ILYAD IT S++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D Sbjct: 550 NLKGKAILYADRITNSMEKAIGETNRRREKQMKYNEEHGIVPQALNKKVGELLDIGQGAN 609 Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++A S Q+ + K+ + +K L +QM+ A +L FE+AA +RD++++ Sbjct: 610 QKAKANKNAKKVAESTALYQVPQTPKEYQQQIKKLEQQMYKYAQDLEFEKAAAVRDQLQQ 669 Query: 793 LK 794 L+ Sbjct: 670 LR 671 >gi|170720725|ref|YP_001748413.1| excinuclease ABC subunit B [Pseudomonas putida W619] gi|169758728|gb|ACA72044.1| excinuclease ABC, B subunit [Pseudomonas putida W619] Length = 671 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 489/669 (73%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD I+IFP+ + A R+ +F +++E I+ F PLTG+ R + Y Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK+ELK RL L K +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEGIKDELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P+D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI +QG R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIRKRVEQGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S+Q AIDET RRREKQ+ N+ + I P+ V + I +++ + Sbjct: 543 NLNGRAILYADQITGSMQRAIDETERRREKQIAFNQANGIVPKGVVKDITDIM------E 596 Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785 AT S ++ ++K ++ +K L ++M A +L FE AA+ Sbjct: 597 GATVPGSRSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656 Query: 786 IRDEIKRLK 794 +RDEI +L+ Sbjct: 657 LRDEITKLR 665 >gi|28898874|ref|NP_798479.1| excinuclease ABC subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|260879452|ref|ZP_05891807.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AN-5034] gi|260898249|ref|ZP_05906745.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus Peru-466] gi|260903248|ref|ZP_05911643.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ4037] gi|32130285|sp|Q87MX6|UVRB_VIBPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|28807093|dbj|BAC60363.1| excinuclease ABC, subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|308088365|gb|EFO38060.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus Peru-466] gi|308093544|gb|EFO43239.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AN-5034] gi|308106551|gb|EFO44091.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ4037] Length = 676 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/669 (55%), Positives = 495/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R +L + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPIL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ L Sbjct: 545 RNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|15602294|ref|NP_245366.1| excinuclease ABC subunit B [Pasteurella multocida subsp. multocida str. Pm70] gi|13431963|sp|P57844|UVRB_PASMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|12720682|gb|AAK02513.1| UvrB [Pasteurella multocida subsp. multocida str. Pm70] Length = 678 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/671 (56%), Positives = 493/671 (73%), Gaps = 15/671 (2%) Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 H+K F + +D+ PSGDQP AI QL++G+ + Q LLGVTGSGKTFT+A VI + Sbjct: 6 HTKS---FILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLN 62 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ Sbjct: 63 RPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASIND 122 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 QI++MR SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G + Q+++L+ L Sbjct: 123 QIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIINQRQILAQLA 182 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 + QY R D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG Sbjct: 183 ELQYTRNDQAFERGTFRVRGEIIDIFPAESDDKAIRIELFDDEIERLSLFDPLTGSSFGP 242 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 V IY +HYVTPR + A++ IK+EL R L + +LLE QR+ QR +D+EM+ Sbjct: 243 VPRYTIYPKTHYVTPRERILNAIEKIKQELAERRQFLLENNKLLEEQRITQRTQFDIEMM 302 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C IENYSRYL+GRN GEPPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD R Sbjct: 303 NELGYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDALLIIDESHVTVPQIGGMYRGDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ G I++Q++RPTG Sbjct: 363 KETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP +EIR QV+D+ E A Q R+L+T LTK+MAEDLT+YL E IRVRY+H Sbjct: 423 LLDPEIEIRPVAIQVDDLLSEARQRADQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQ Sbjct: 483 SDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAARN+ K ILYAD IT S+Q AI ET RRREKQ+++N+ I PQ++ +K+ E++ Sbjct: 543 TIGRAARNLKGKAILYADRITNSMQKAITETNRRREKQMKYNEARGIVPQALNKKVGELL 602 Query: 734 DPILLEDA-----ATTNISIDAQQLSL-----SKKKGKAHLKSLRKQMHLAADNLNFEEA 783 D + + A A N A+ +L + K+ + +K L +QM+ A +L FE+A Sbjct: 603 D--IGQGANQKAKANRNAKKVAEPTALYVVPQTAKEYQQQIKKLEQQMYKYAQDLEFEKA 660 Query: 784 ARIRDEIKRLK 794 A +RD++++L+ Sbjct: 661 AAVRDQLQQLR 671 >gi|325578560|ref|ZP_08148660.1| excision endonuclease subunit UvrB [Haemophilus parainfluenzae ATCC 33392] gi|325159796|gb|EGC71926.1| excision endonuclease subunit UvrB [Haemophilus parainfluenzae ATCC 33392] Length = 678 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/673 (56%), Positives = 487/673 (72%), Gaps = 30/673 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L++ + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G + Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V +Y Sbjct: 190 DQAFQRGTFRVRGEVIDIFPAESDDRAIRIELFDDEIERLSLFDPLTGTSFGAVPRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIEKIKAELVQRREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ IV+Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIVDQVVRPTGLLDPQIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLD------ 603 Query: 741 AATTNISIDAQQLSLSKKKGKA-------------------HLKSLRKQMHLAADNLNFE 781 I A Q + SK++GK +K L +QM+ A +L FE Sbjct: 604 -----IGQGANQKAKSKQRGKTAAEPTALYNAPKSAKEFQQQIKKLEQQMYKFAQDLEFE 658 Query: 782 EAARIRDEIKRLK 794 +AA +RD++ +L+ Sbjct: 659 KAAAVRDKLHQLR 671 >gi|303250430|ref|ZP_07336628.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252217|ref|ZP_07534114.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650756|gb|EFL80914.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860139|gb|EFM92155.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 673 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +L+ Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRDKIGQLR 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|110833806|ref|YP_692665.1| excinuclease ABC subunit B [Alcanivorax borkumensis SK2] gi|110646917|emb|CAL16393.1| excinuclease ABC, B subunit [Alcanivorax borkumensis SK2] Length = 671 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/668 (56%), Positives = 482/668 (72%), Gaps = 18/668 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F++ +DY P+GDQP AIAQL++GI Q LLGVTGSGKTFTMA VI RP I+ Sbjct: 4 SLFKLHSDYQPAGDQPTAIAQLIEGIDDGLGHQTLLGVTGSGKTFTMANVIAQTGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NEQI++M Sbjct: 64 MAPNKTLAAQLYGEFREFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEQIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT+++LER D I+V++VS IYG+G SY M++ L GD ++Q+ELL L + QY Sbjct: 124 RLSATKAILERPDTIIVATVSAIYGLGDPASYHAMVLHLVRGDHIDQRELLRRLAELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R ++ R T+RV GD I+IFP+ E A R+ +F +++E IS F PLTG+ IR + Sbjct: 184 RNEMDFRRATYRVRGDVIDIFPAEEEKEAVRIELFDDEVESISIFDPLTGEVIRRISRTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SHYVTPR T+ A++ IKEEL RL EL+++ +L+EAQRLEQR +D+EML+ G Sbjct: 244 IYPKSHYVTPRETVLKAVEMIKEELAERLAELKEQNKLVEAQRLEQRTRFDIEMLQELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C +ENYSR +GR PG+ PPTLF+Y+P+++LL DESHVTIPQ+ MY+GD RK TL Sbjct: 304 CNGVENYSRLFSGRAPGDAPPTLFDYLPDNALLIADESHVTIPQLGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPS MDNRPL+FEEW L P + VSATPG +E ++ G +VEQ++RPTGLVDP Sbjct: 364 SFGFRLPSAMDNRPLKFEEWELLAPQMVFVSATPGPYE-KKYAGQVVEQVVRPTGLVDPK 422 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +EIR A TQV+D+ E + R+L+T LTKRMAEDLTEYL E IRVRY+HS++ T Sbjct: 423 IEIRPATTQVDDLLGEAKECIAKEQRVLVTTLTKRMAEDLTEYLNEHGIRVRYLHSDIDT 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRA Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 542 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ + ILYAD +T S++ AIDET RRREKQ N+ + I PQ + +KI +++D Sbjct: 543 ARNVDGRAILYADKMTGSMERAIDETDRRREKQEAFNEANGITPQGLNKKIRDIMD---- 598 Query: 739 EDAATTNI------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D+ + S + S + +K+L +M A NL FE+AA Sbjct: 599 -DSGGSRFDRKYKGEKKVAESPSDYLGARSPAQVAKEIKALEAKMMEHAKNLEFEDAAAT 657 Query: 787 RDEIKRLK 794 RD+I +L+ Sbjct: 658 RDKIHQLR 665 >gi|325917766|ref|ZP_08179951.1| Excinuclease ABC subunit B [Xanthomonas vesicatoria ATCC 35937] gi|325536021|gb|EGD07832.1| Excinuclease ABC subunit B [Xanthomonas vesicatoria ATCC 35937] Length = 673 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FELVSPYSPAGDQPAAIEKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F D+E+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDVEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AAEKRAGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|307249872|ref|ZP_07531846.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858061|gb|EFM90143.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 673 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G ++Q+E+L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTK+MAEDLT+YL E + VRY+HS++ T+E Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVCVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H+I PQ++ +K+ E++D + Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDK 607 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ S S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|85860217|ref|YP_462419.1| excinuclease ABC subunit B [Syntrophus aciditrophicus SB] gi|85723308|gb|ABC78251.1| excinuclease ABC subunit B [Syntrophus aciditrophicus SB] Length = 696 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/653 (56%), Positives = 489/653 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T++ P GDQP AI +L G+ Q+L+GVTGSGKTFT+A VIEA+Q+PA+++A Sbjct: 32 FRIVTEFKPRGDQPQAIEKLADGLRLGLPHQVLVGVTGSGKTFTIANVIEAVQKPALIIA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+ FP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSINE ID++RH Sbjct: 92 PNKTLAAQLYGEFKSLFPDNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSSINEDIDKLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL+R D I+V+SVSCIYG+GS E+Y ++++L+ G + ++ +L LV QY+R Sbjct: 152 AATHSLLDRRDVIIVASVSCIYGLGSPEAYQGLLLELEAGMELSREMMLRRLVDIQYERN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD +EIFP + ED A RV FG+ ++ +S PL G+K+ ++E I +Y Sbjct: 212 DVDFHRGSFRVRGDVVEIFPPYEEDRAIRVEFFGDVVDALSFVDPLRGKKLHSLERIAVY 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R LN A+ I+EEL+ RL EL +LLEAQRLEQR +D+EM+E G CQ Sbjct: 272 PGSHYVTTRDNLNRAIAAIREELQGRLAELHAANKLLEAQRLEQRTNFDIEMMEEMGYCQ 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPPPTL EY+P+D+L+ +DESHVT+PQ+ GMYRGD RK TL Y Sbjct: 332 GIENYSRHLTGRAPGEPPPTLVEYLPKDALIILDESHVTVPQLIGMYRGDRSRKETLVNY 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + +SATP ++E+++ +VEQIIRPTGL+DP + Sbjct: 392 GFRLPSALDNRPLRFEEYEKFPQQRLYISATPAAYEIKKAGPHVVEQIIRPTGLMDPEII 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A++ R+L+T LTKRMAE+L+ Y ++V+Y+HS+V+TLE Sbjct: 452 VRPVTGQVDDLLTEIRRRAEKKERVLVTTLTKRMAENLSTYYEGLGVKVKYLHSDVQTLE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ IIRDLRLG+FDVLVG+NLLREGLDIPE LVAILDADKEGFLRS+ SLIQT GRAAR Sbjct: 512 RVSIIRDLRLGEFDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTSGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VI+YADTIT+SIQ +DET RRR Q +N++H+I P+S+K+ I ++ I D Sbjct: 572 NVGGQVIMYADTITRSIQACLDETRRRRALQERYNREHSITPESIKKSIDNILSSIYEAD 631 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + + + +Q+ LS + ++ L+ +M AA L FE+AAR+RD+IK L Sbjct: 632 YVSVPVVSEEKQVYLSDTDLEKTIRQLKGEMKEAAKRLEFEKAARLRDQIKAL 684 >gi|91227346|ref|ZP_01261735.1| excinuclease ABC subunit B [Vibrio alginolyticus 12G01] gi|91188610|gb|EAS74900.1| excinuclease ABC subunit B [Vibrio alginolyticus 12G01] Length = 676 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 495/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ +DY PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSDYQPSGDQPGAINQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD +EQ+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIEQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R +L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGDVADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD IT S++ A+DET RRREKQ +N++ I+PQ++K I ++++ L Sbjct: 545 RNIEGKAILYADRITNSMKKAMDETNRRREKQEAYNEEMGISPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA+ Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEALSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|257464648|ref|ZP_05629019.1| excinuclease ABC subunit B [Actinobacillus minor 202] gi|257450308|gb|EEV24351.1| excinuclease ABC subunit B [Actinobacillus minor 202] Length = 672 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/661 (57%), Positives = 491/661 (74%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L++G++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 8 FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +DVA RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGRVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IKEEL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILEAIEQIKEELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ +I +Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D I D Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD-IGQTD 605 Query: 741 ----AATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + S D Q + S+K+ + LK L +QM A +L FE+AA +RD+I +LK Sbjct: 606 KPKRSKKSAKSTDNQTAYIPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIHQLK 665 Query: 795 S 795 + Sbjct: 666 A 666 >gi|333009765|gb|EGK29214.1| excinuclease ABC, B subunit [Shigella flexneri K-272] gi|333020430|gb|EGK39693.1| excinuclease ABC, B subunit [Shigella flexneri K-227] Length = 673 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSVFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|289667337|ref|ZP_06488412.1| excinuclease ABC subunit B [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 673 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T++ V++ +Q+P +VMA Sbjct: 5 FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTISNVVQHVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRM+E+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPISDIMEGA-RED 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 A + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AVEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|296388360|ref|ZP_06877835.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAb1] Length = 670 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G I+EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|313108461|ref|ZP_07794465.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 39016] gi|310880967|gb|EFQ39561.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 39016] Length = 670 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNSNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G I+EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|332288675|ref|YP_004419527.1| excinuclease ABC subunit B [Gallibacterium anatis UMN179] gi|330431571|gb|AEC16630.1| excinuclease ABC subunit B [Gallibacterium anatis UMN179] Length = 677 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/668 (56%), Positives = 485/668 (72%), Gaps = 21/668 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AIA+L++ ++ Q LLGVTGSGKTFT+A VI + RPA++ A Sbjct: 8 FILHSDFKPSGDQPTAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMIFA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G ++Q+E+LS L QY R Sbjct: 128 SATKSFLERRDTIVVTSVSAIYGLGDPDSYLKMMLHLQTGAIIDQREILSHLAALQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +DVA RV +F +IE +S F PLT + V +Y Sbjct: 188 DHAFQRGTFRVHGEVIDIFPAESDDVALRVELFDEEIERLSLFDPLTNRSFGAVPRYTVY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILEAIEQIKQELVQRREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYIPNDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPEIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L ++ R+L+T LTK+MAEDLT+YL E + VRY+HS++ T+E Sbjct: 428 VRPVSTQVDDLLSEIRLRVEKNERVLVTTLTKKMAEDLTDYLAEHGVLVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N+N K ILYAD IT S+Q AIDET RRR+KQ +N++H I P+++ +KI E++D Sbjct: 548 NLNGKAILYADRITPSMQKAIDETERRRQKQQAYNEQHGIVPKALNKKIGEILDIGQSAN 607 Query: 735 --------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 P E AAT + +A+ L + +K L +QM+ A +L FE+AA+ Sbjct: 608 QKAKKQRLPKAAEPAATYEMLDNAKDL-------QKQIKHLEQQMYKFAQDLEFEKAAQA 660 Query: 787 RDEIKRLK 794 RD++ L+ Sbjct: 661 RDQLHALR 668 >gi|116051134|ref|YP_790035.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|115586355|gb|ABJ12370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14] Length = 670 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G I+EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|1592818|emb|CAA63759.1| uvrB [Pseudomonas aeruginosa PAO1] Length = 670 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLQRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G I+EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|254428046|ref|ZP_05041753.1| excinuclease ABC, B subunit [Alcanivorax sp. DG881] gi|196194215|gb|EDX89174.1| excinuclease ABC, B subunit [Alcanivorax sp. DG881] Length = 671 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/670 (56%), Positives = 484/670 (72%), Gaps = 22/670 (3%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F++ +DY P+GDQP AIAQL++GI Q LLGVTGSGKTFTMA VIE RP I+ Sbjct: 4 SLFKLHSDYQPAGDQPKAIAQLIEGIDDGLGHQTLLGVTGSGKTFTMANVIEQTGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NEQI++M Sbjct: 64 MAPNKTLAAQLYGEFREFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEQIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT+++LER D I+V++VS IYG+G SY M++ L GD ++Q+ELL L + QY Sbjct: 124 RLSATKAILERPDTIIVATVSAIYGLGDPASYHAMVLHLVRGDHIDQRELLRRLAELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R ++ R T+RV GD I+IFP+ E A R+ +F +++E IS F PLTG+ IR + Sbjct: 184 RNEMDFRRATYRVRGDVIDIFPAEEEKEAVRIELFDDEVESISIFDPLTGEVIRRIGRTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SHYVTPR T+ A++ IKEEL RL EL+++ +L+EAQRLEQR +D+EML+ G Sbjct: 244 IYPKSHYVTPRETVLKAVEMIKEELTERLAELKEQNKLVEAQRLEQRTRFDIEMLQELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C +ENYSR +GR PG+ PPTLF+Y+P+++LL DESHVTIPQ+ MY+GD RK TL Sbjct: 304 CNGVENYSRLFSGRAPGDAPPTLFDYLPDNALLIADESHVTIPQLGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPS MDNRPL+FEEW L P + VSATPG +E ++ G +VEQ++RPTGLVDP Sbjct: 364 SFGFRLPSAMDNRPLKFEEWEQLAPQMVFVSATPGPYE-QKYAGQVVEQVVRPTGLVDPK 422 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +EIR A TQV+D+ E + R+L+T LTKRMAEDLTEYL E IRVRY+HS++ T Sbjct: 423 IEIRPATTQVDDLLGEAKECIAKEQRVLVTTLTKRMAEDLTEYLNEHGIRVRYLHSDIDT 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRA Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 542 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-- 736 ARNV + ILYAD +T S++ AI ET RRREKQ NK + I PQ + +KI +++D Sbjct: 543 ARNVEGRAILYADKMTGSMERAIGETDRRREKQEAFNKANGITPQGLNKKIRDIMDDSGG 602 Query: 737 ------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + E AA +DA+ + K+ +K L +M A NL FE+AA Sbjct: 603 SRFDRKYKGEKKVAESAAD---YLDARSPAQVAKE----IKVLEAKMLEHAKNLEFEDAA 655 Query: 785 RIRDEIKRLK 794 RD+I +L+ Sbjct: 656 ATRDKIHQLR 665 >gi|153838169|ref|ZP_01990836.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810] gi|149748428|gb|EDM59287.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810] Length = 676 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/669 (55%), Positives = 496/669 (74%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R +L + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++EL++ G I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELDKSAGEIADQVVRPTGLLDPIL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ L Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|21231919|ref|NP_637836.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767952|ref|YP_242714.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris str. 8004] gi|23822293|sp|Q8P7X1|UVRB_XANCP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|81306071|sp|Q4UW79|UVRB_XANC8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|21113646|gb|AAM41760.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573284|gb|AAY48694.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris str. 8004] Length = 673 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/669 (55%), Positives = 490/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L IG+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603 Query: 741 AATTNIS-------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA D + + ++ GK LK+L ++M+ A +L FE AA+IR Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGK--LKALEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I +LK++ Sbjct: 662 DQILKLKAA 670 >gi|289665218|ref|ZP_06486799.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 673 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FRLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQHVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L +G+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G + E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+ + G R+L+T LTKRM+E+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+ I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPISDIMEGA-RED 603 Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 A + D + + ++ GK LKSL ++M+ A +L FE AA+IR Sbjct: 604 AVEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|224826639|ref|ZP_03699740.1| excinuclease ABC, B subunit [Lutiella nitroferrum 2002] gi|224601240|gb|EEG07422.1| excinuclease ABC, B subunit [Lutiella nitroferrum 2002] Length = 670 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/662 (56%), Positives = 482/662 (72%), Gaps = 1/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQPAAIAQL++G+ Q LLGVTGSGKTFTMA VI RPAI+MA Sbjct: 10 FKLHQPFPPAGDQPAAIAQLVEGLSDGLSYQTLLGVTGSGKTFTMANVIARTGRPAIIMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 70 HNKTLAAQLYSEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER DC++V++VS IYGIG Y QMI+ LK G+++ Q++++ LV QY+R Sbjct: 130 SATKSLLERPDCVIVATVSAIYGIGDPSDYHQMILHLKEGETIAQRDIIGRLVAMQYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD I+IFP+ ++A RVS+F +++E ++ F PLTG + V ++ Sbjct: 190 DLDFTRGTFRVRGDVIDIFPAESAELALRVSLFDDELETLTLFDPLTGVTRQRVGRFTVF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IK EL+ R+ + EG+L+EAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTPRDTVLRACEKIKLELRERVDFYQHEGKLVEAQRIEQRTRFDLEMLYEMGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PGEPPPTL +Y+P+++L+F+DESHVTIPQI GMY+GD RK L +Y Sbjct: 310 GIENYSRHFSGRGPGEPPPTLIDYLPKNALMFIDESHVTIPQIGGMYKGDAARKLNLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ +SATP +E G +VEQ++RPTGL+DP +E Sbjct: 370 GFRLPSAADNRPLKFNEFERMMPQTVFISATPADYEAGHA-GQVVEQVVRPTGLIDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR +QV+D+ EI L R+L+T LTKRMAE L +Y E ++VRY+HS++ T+E Sbjct: 429 IRPVASQVDDLLSEITLRVGSNERVLVTTLTKRMAEQLADYYTEHGVKVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD IT S++ AIDET RRR KQ+ N +H I P+ V++KI ++ID + + Sbjct: 549 NLHGKAILYADRITNSMRRAIDETERRRTKQIAFNTEHGIVPKGVEKKIKDIIDGVYSAE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 A + DA+ + +K +K L K M AA NL FE+AA +RD++K LK + Sbjct: 609 AEKKKLVDDARVAMMDEKALAKEIKRLEKDMLEAARNLEFEKAAGLRDQLKALKEKAWIN 668 Query: 801 GL 802 L Sbjct: 669 EL 670 >gi|15598334|ref|NP_251828.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1] gi|107102687|ref|ZP_01366605.1| hypothetical protein PaerPA_01003752 [Pseudomonas aeruginosa PACS2] gi|218890661|ref|YP_002439525.1| excinuclease ABC subunit B [Pseudomonas aeruginosa LESB58] gi|12644339|sp|P72174|UVRB_PSEAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|9949251|gb|AAG06526.1|AE004737_12 excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1] gi|218770884|emb|CAW26649.1| excinuclease ABC subunit B [Pseudomonas aeruginosa LESB58] Length = 670 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G ++EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|240948695|ref|ZP_04753067.1| excinuclease ABC subunit B [Actinobacillus minor NM305] gi|240296911|gb|EER47489.1| excinuclease ABC subunit B [Actinobacillus minor NM305] Length = 671 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/661 (57%), Positives = 490/661 (74%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L++G++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 8 FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +DVA RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGRVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IKEEL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILEAIEQIKEELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ +I +Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D I D Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD-IGQTD 605 Query: 741 ----AATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + S D Q + S+K+ + LK L +QM A +L FE+AA +RD+I LK Sbjct: 606 KPKRSKKSAKSTDNQTAYIPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIGVLK 665 Query: 795 S 795 + Sbjct: 666 A 666 >gi|332528395|ref|ZP_08404389.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624] gi|332042158|gb|EGI78490.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624] Length = 710 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/691 (54%), Positives = 496/691 (71%), Gaps = 7/691 (1%) Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179 G + TP S + S + F++ Y PSGDQP AI +L++G++ E Q LLGVTGS Sbjct: 18 GALATPVESAAGQFVSFPGSPFELFQPYPPSGDQPEAINRLVEGVNDGEVFQTLLGVTGS 77 Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 GKT+TMA VI + RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP Sbjct: 78 GKTYTMANVIARLGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVP 137 Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299 + D +IEK+S+INE I+++R S T+SLLER D ++V++VS IYGIG E Y QMI+ L+ Sbjct: 138 QRDLFIEKDSAINEHIEQLRLSCTKSLLERRDVVIVATVSAIYGIGKPEDYHQMILTLRA 197 Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359 GD + Q+++++ LV+ QY+R D+ RGTFRV GD++++FP+ ++A R+ +F ++IE Sbjct: 198 GDKLGQRDVIAQLVRMQYQRNDMDFSRGTFRVRGDTVDVFPAEHSELALRIELFDDEIEN 257 Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419 + F PLTG+ + + +Y +SHYVTPR + A++ IK EL R+ E G+L+EA Sbjct: 258 LQLFDPLTGRIKQKISRFTVYPSSHYVTPREQVLKAVETIKVELVDRVKEFVDAGKLVEA 317 Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479 QRLEQR +DLEML G C+ IENY+R+L+G PG+PPPTL +Y+P D+L+F+DESHV Sbjct: 318 QRLEQRTRFDLEMLSEVGHCKGIENYTRHLSGARPGDPPPTLTDYLPRDALMFLDESHVM 377 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 I Q+ GMY GD RK TL EYGFRLPS +DNRPL+FEE+ I VSATPG WE Sbjct: 378 IGQLGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFETKMRQAIFVSATPGDWEKTH 437 Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599 G +VEQ++RPTGL+DP VE+R A QV+DV EI L ++ R+L+TVLTKRMAE LT Sbjct: 438 T-GAVVEQLVRPTGLIDPEVEVRPALHQVDDVLQEIRLRVERHERVLITVLTKRMAEQLT 496 Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 +YL E ++VRY+HS+V T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDA Sbjct: 497 DYLTENGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDA 556 Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 DKEGFLRS+ SLIQTIGRAARN+ K ILYAD IT S++ A+ ET RRR KQL HN +H Sbjct: 557 DKEGFLRSERSLIQTIGRAARNLRGKAILYADRITDSMKRALGETERRRAKQLAHNTEHG 616 Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHL 773 I P+++ +++ ++ID + E A + ++ AQ +S+K +K L KQM Sbjct: 617 ITPRAIVKQVRDLIDGVYSEKAGRESERLEREAMARAQVEDMSEKDIAREIKRLEKQMLE 676 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804 A NL FE+AA+ RD++ LK+ + + D Sbjct: 677 HAKNLEFEQAAKTRDQLTLLKARAFGAAVPD 707 >gi|221135472|ref|ZP_03561775.1| excinuclease ABC subunit B [Glaciecola sp. HTCC2999] Length = 672 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/663 (55%), Positives = 489/663 (73%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ Y P+GDQP AIA L++GI Q LLGVTGSGKTFTMA VIE++QRP +++A Sbjct: 5 FELQSKYSPAGDQPTAIASLVEGIEDGLACQTLLGVTGSGKTFTMANVIESVQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++++SVS IYG+G +SY +M++ L+ GD+++Q+++L L + QYKR Sbjct: 125 SATKALMERRDVVIIASVSAIYGLGDPKSYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I+IFP+ E A RV +F +IE+IS F PLTG + V ++ Sbjct: 185 DVAFERGNFRVRGDVIDIFPADSEKQAVRVELFDEEIEQISLFDPLTGAVDKKVTRATVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R +L++ +L+E QR+ QR +D+EM+ G C Sbjct: 245 PKTHYVTPREKILDAIERIKTELVSRKDQLKESNKLIEEQRISQRTQFDIEMMLELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL +Y P+D LL +DESHVT+ QI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTLIDYFPKDGLLMIDESHVTVSQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + P TI VSATPG ELE+C G +VEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEHIAPQTIYVSATPGKHELERCAGDVVEQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EI+ R+L+T LTKRMAEDL+EYL E ++VRY+HS++ T+E Sbjct: 425 IRPVATQVDDVLSEIHKRVAVNERVLITTLTKRMAEDLSEYLNENGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+GKFDV+VGINLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRAAR Sbjct: 485 RIEIIRDLRIGKFDVIVGINLLREGLDMPEVSLVAILDADKEGFLRADKSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N + ILY D IT S+Q AIDET RRR+KQ+EHN+ H I PQ++ + I +++D + + Sbjct: 545 HLNGRAILYGDKITGSMQRAIDETDRRRKKQIEHNELHGIVPQALNKPITDIMD-VGDDS 603 Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A + + ++++ +K + + L K M AA L FE+AA +RD+I++ Sbjct: 604 AHPASGKVKLRKIAEKEKTYQKMTATQMMDKVAELEKTMFEAARELEFEKAASLRDDIEK 663 Query: 793 LKS 795 L+S Sbjct: 664 LRS 666 >gi|262274535|ref|ZP_06052346.1| excinuclease ABC subunit B [Grimontia hollisae CIP 101886] gi|262221098|gb|EEY72412.1| excinuclease ABC subunit B [Grimontia hollisae CIP 101886] Length = 674 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/668 (56%), Positives = 483/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + PSGDQP AI QLL+G+ + Q LLGVTGSGKT+TMA VI RP +++A Sbjct: 5 FQLHSPFKPSGDQPTAINQLLEGLDAGLAHQTLLGVTGSGKTYTMANVIAKAGRPTMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE +++MR Sbjct: 65 PNKTLAAQLYGEMRAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHVEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G +SY +M++ L+ GD +EQ+ +L L + QY R Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPDSYLKMMLHLRRGDMIEQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D RGTFRV G+ I+IFP+ + A R+ +F +++E IS F PLTG RN+ I Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDRDAIRIELFDDEVECISVFDPLTGAISERNLPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IKEEL R L + +LLE QR+ QR +DLEM++ G C Sbjct: 245 YPKTHYVTPREKILDAIEKIKEELADRKRVLLENNKLLEEQRISQRTMFDLEMMQELGYC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ L P TI VSATPG +ELE+ G + EQ++RPTGL+DP V Sbjct: 365 YGFRLPSALDNRPLKFDEFEALAPQTIYVSATPGKYELEKSGGEVAEQVVRPTGLLDPEV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + Q R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRTQLNERVLVTTLTKRMAEDLTEYLEEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734 RN+ K ILY DTIT S+Q AI+ET RRR KQ HN+KH I PQ + +K+ +V++ Sbjct: 545 RNLAGKAILYGDTITGSMQRAIEETERRRAKQQAHNEKHGIVPQKLSKKVADVLELGGKR 604 Query: 735 -------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 P L+ A DA + S ++ +A ++ L QM+ AA NL FE AA +R Sbjct: 605 RSHKPKVPASLKAVAED----DAAYVVRSPQQIEAQIQKLEAQMYEAAQNLEFETAAGLR 660 Query: 788 DEIKRLKS 795 DEI L++ Sbjct: 661 DEIAALRA 668 >gi|152985171|ref|YP_001347370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PA7] gi|150960329|gb|ABR82354.1| excinuclease ABC, B subunit [Pseudomonas aeruginosa PA7] Length = 670 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G ++EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYDNELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|254229839|ref|ZP_04923244.1| excinuclease ABC, B subunit [Vibrio sp. Ex25] gi|262393723|ref|YP_003285577.1| excinuclease ABC subunit B [Vibrio sp. Ex25] gi|151937608|gb|EDN56461.1| excinuclease ABC, B subunit [Vibrio sp. Ex25] gi|262337317|gb|ACY51112.1| excinuclease ABC subunit B [Vibrio sp. Ex25] Length = 676 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/669 (55%), Positives = 494/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ +DY PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSDYQPSGDQPGAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++I+ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEIDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R +L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRLEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGDVADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI L + + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRLRSAKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD IT S++ A+DET RRREKQ +N++ I+PQ++K I ++++ L Sbjct: 545 RNLEGKAILYADRITNSMKKAMDETNRRREKQKAYNEEMGISPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA+ Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|120553961|ref|YP_958312.1| excinuclease ABC subunit B [Marinobacter aquaeolei VT8] gi|120323810|gb|ABM18125.1| Excinuclease ABC subunit B [Marinobacter aquaeolei VT8] Length = 685 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/674 (55%), Positives = 487/674 (72%), Gaps = 14/674 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA L+ GI S Q LLGVTGSGKTFT+A V++ +QRP I+MA Sbjct: 13 FRVDSPYQPAGDQPKAIAGLVDGIESGLAHQTLLGVTGSGKTFTIANVVQQVQRPTIIMA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 73 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+ +L L + QY R Sbjct: 133 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQMDQRYILRRLAELQYTRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R +RV GD I++FP+ + A R+ +F +++E +S F PLTG+ +R V + IY Sbjct: 193 DIEFHRANYRVRGDVIDVFPAESQKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IK+EL +RL +L RL+EAQRLE+R YD+EM+ G C Sbjct: 253 PKSHYVTPRQTVLDAVEDIKQELDVRLQQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRNPGE PPTL++Y+P ++LL VDESHVTIPQI MY+GD RK TL EY Sbjct: 313 GIENYSRYLSGRNPGEAPPTLYDYLPPNALLVVDESHVTIPQIGAMYKGDRSRKETLVEY 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW + P I VSATPG++E E G +VEQ++RPTGL+DP +E Sbjct: 373 GFRLPSALDNRPMRFEEWERIAPQMIFVSATPGNYEAEHA-GQVVEQVVRPTGLLDPEIE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ R+L+T LTKRMAEDLT++L E +IRVRY+HS++ T+E Sbjct: 432 VRPASTQVDDLLSEIHQRVGVNERVLVTTLTKRMAEDLTDFLMEHDIRVRYLHSDIDTVE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 492 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 NVN K ILY D IT S+Q AIDET RRR KQ+ HN++H I P + +KI ++++ Sbjct: 552 NVNGKAILYGDRITGSMQRAIDETERRRAKQMAHNEEHGITPIGLNKKIADIMEGAAGGG 611 Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 + AA + + S + + L +M+ AA +L+FE AAR+R Sbjct: 612 GRGRRKAERPGQKAAEEAEDYRVKVGNRSPEDVLKEVAKLEDEMYKAAADLDFETAARLR 671 Query: 788 DEIKRLKSSPYFQG 801 D+I LK + G Sbjct: 672 DQISELKEAALRTG 685 >gi|262373065|ref|ZP_06066344.1| excinuclease ABC, B subunit [Acinetobacter junii SH205] gi|262313090|gb|EEY94175.1| excinuclease ABC, B subunit [Acinetobacter junii SH205] Length = 674 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/666 (56%), Positives = 485/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T+Y P+GDQP AI +L+KGI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTNYQPAGDQPQAIEKLVKGIEQGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + +++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A RV +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+ELK +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+YIPED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRGAGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTT+ VSATP +ELE+ + IVEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPAQYELEKSEQ-IVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ Q R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKQVNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732 NV K ILYAD IT S++ A+DET RRR KQ+E N+ H I P+S V++ I E+ Sbjct: 546 NVKGKAILYADRITDSMRKAMDETERRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVLS 605 Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ID +LE A + IS D Q L K H+ L K+M A+ L FE+AAR+RDE Sbjct: 606 DDEIDEKVLEQAQS--ISADEQHLLSDPKLFAKHISKLEKEMLKASKELQFEQAARLRDE 663 Query: 790 IKRLKS 795 I R+K+ Sbjct: 664 IVRMKA 669 >gi|5870855|gb|AAD46146.2|AF102847_1 excinuclease ABC subunit B [Xanthomonas campestris pv. campestris] Length = 673 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 490/669 (73%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L+ + Q LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV++VS IYG+G+ E Y + + L IG+ ++Q++L+ L QY R Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV G+ +++FP+ + A R+ +F DIE+++ F PLTG+ +R ++ +Y Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R +A+ IKEELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +EL + G I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E++ + G R+L+T LTKRMAE+LTEYL E IRVRY+HS++ T+E Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLRE LD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREALDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV I ++++ ED Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603 Query: 741 AATTNIS-------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 AA D + + ++ GK LK+L ++M+ A +L FE AA+IR Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGK--LKALEQKMYQHAKDLEFEAAAQIR 661 Query: 788 DEIKRLKSS 796 D+I++LK++ Sbjct: 662 DQIQKLKAA 670 >gi|327481721|gb|AEA85031.1| excinuclease ABC subunit B [Pseudomonas stutzeri DSM 4166] Length = 671 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 488/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+G +SY +M++ + GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK+EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLDAVEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GEPPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI + R+L+T LTKRM+EDLT+YL + +++VRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIRKCVAKEERVLVTTLTKRMSEDLTDYLGDHDVKVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S+Q AIDET RRR KQ+ N+ H I P+ VK+ + ++++ + Sbjct: 543 NLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGATVPG 602 Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + + +A+ S + + ++ L ++M L A +L FE AA RDEI Sbjct: 603 SRSKKRRGEAKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARDEIH 662 Query: 792 RLK 794 +L+ Sbjct: 663 KLR 665 >gi|255320767|ref|ZP_05361942.1| excinuclease ABC subunit B [Acinetobacter radioresistens SK82] gi|262379457|ref|ZP_06072613.1| excinuclease ABC, B subunit [Acinetobacter radioresistens SH164] gi|255302144|gb|EET81386.1| excinuclease ABC subunit B [Acinetobacter radioresistens SK82] gi|262298914|gb|EEY86827.1| excinuclease ABC, B subunit [Acinetobacter radioresistens SH164] Length = 673 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/666 (56%), Positives = 487/666 (73%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T Y P+GDQP AI +L+KGI K QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FELVTQYAPAGDQPQAIEKLVKGIQQGYKSQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D I+V+SVS IYG+G E+Y +M++ + GD V + +++ LV+ QY R Sbjct: 127 SATRSLLERRDAIIVASVSAIYGLGDPEAYMKMLLHIVQGDRVGRDDIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ ++IFP+ E A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFVRGTYRIRGEIMDIFPAESEQNAIRIELFDDEVDSIRWFDPLTGKMLRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ I++ELK +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLVRAIDTIRDELKDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG+ PPTLF+Y+P+D+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRRPGDAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTT+ VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIIPTTVFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 IRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTAYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 N+ K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S ++++ ID +L Sbjct: 546 NIKGKAILYADRITDSMQKAIDETERRRNKQIEFNELHGIIPRSAVRQVIKEIDTGEVLA 605 Query: 739 EDAATTNISIDAQQLSLSK---------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ED I+ AQ LSL+ K H+ L K+M A+ L FE+AAR+RDE Sbjct: 606 EDEIDEKIT--AQALSLTADERHILADPKLLSKHMAKLEKEMLKASKELQFEQAARLRDE 663 Query: 790 IKRLKS 795 I RLK+ Sbjct: 664 ILRLKA 669 >gi|301156422|emb|CBW15893.1| excinulease of nucleotide excision repair, DNA damage recognition component [Haemophilus parainfluenzae T3T1] Length = 678 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/673 (55%), Positives = 487/673 (72%), Gaps = 30/673 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L++ + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V +Y Sbjct: 190 DQAFQRGTFRVRGEVIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTSFGAVPRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIEKIKAELVQGREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ IV+Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIVDQVVRPTGLLDPQIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLD------ 603 Query: 741 AATTNISIDAQQLSLSKKKGKA-------------------HLKSLRKQMHLAADNLNFE 781 I A Q + SK++GK +K L +QM+ A +L FE Sbjct: 604 -----IGQGANQKAKSKQRGKTAAEPTALYNTPKSAKEFQQQIKKLEQQMYKFAQDLEFE 658 Query: 782 EAARIRDEIKRLK 794 +AA +RD++ +L+ Sbjct: 659 KAAAVRDQLHQLR 671 >gi|315634006|ref|ZP_07889295.1| excision endonuclease subunit UvrB [Aggregatibacter segnis ATCC 33393] gi|315477256|gb|EFU67999.1| excision endonuclease subunit UvrB [Aggregatibacter segnis ATCC 33393] Length = 680 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/673 (55%), Positives = 488/673 (72%), Gaps = 15/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AIA+L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G + Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A R+ +F ++IE +S F PLTG V +Y Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRDEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGAEIIDQVVRPTGLLDPQIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ ++N+ H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEDHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ + S K+ + +K L +QM+ A +L FE+AA +RD Sbjct: 607 GANQKAKANKQRGKMVAEPTALYTVPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVRD 666 Query: 789 EIKRLKSSPYFQG 801 ++++L+ S G Sbjct: 667 QLQQLRESFMLSG 679 >gi|257454228|ref|ZP_05619498.1| excinuclease ABC subunit B [Enhydrobacter aerosaccus SK60] gi|257448401|gb|EEV23374.1| excinuclease ABC subunit B [Enhydrobacter aerosaccus SK60] Length = 705 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/667 (56%), Positives = 487/667 (73%), Gaps = 20/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M T++ PSGDQP AIA+L+ G+ QLLLGVTGSGKT+TMAKVI QRP I+MA Sbjct: 41 FEMVTEFEPSGDQPQAIAKLVDGVDKGMHGQLLLGVTGSGKTYTMAKVIAQCQRPTIIMA 100 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 101 HNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+++SVSCIYG+G ESY +M++ + +GD +++ +L LV+ QY R Sbjct: 161 SATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYTRN 220 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT+R+ G+ ++I+P+ E +A R+SMF +++E+I+ F PLTG+ +R+V I IY Sbjct: 221 ELDFGRGTYRLRGEVLDIYPAESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRITIY 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR L A IK EL+ RL +L+EAQR+++R TYDLEM++ G C Sbjct: 281 PKSHYVTPRDKLERASGTIKAELEQRLEYFRAHDKLIEAQRIKERTTYDLEMIQQLGYCN 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+YIP D+LLF+DESHVT+PQ+ MY+GD RK TL Y Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLVNY 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL FEEW + P+T+ VSATP +ELE + IVEQ++RPTGLVDP +E Sbjct: 401 GFRLPSAMDNRPLMFEEWERITPSTVYVSATPAQYELEHSEQ-IVEQVVRPTGLVDPILE 459 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EIN+ + R+L+T LTKRMAEDLT YL E NI+V Y+HS++ T+E Sbjct: 460 IRPVLTQVDDVLSEINIRKAKDERVLITTLTKRMAEDLTGYLKEYNIKVAYLHSDIDTVE 519 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAI DADKEGFLRS+ SLIQTIGRAAR Sbjct: 520 RMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +VN K ILYAD+IT S+Q AI+ET RRR KQ+ +N++H I P S + +I + ID + Sbjct: 580 HVNGKAILYADSITPSMQKAIEETERRRAKQMAYNEEHGITPTSARRQITDKID---TGE 636 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLR-------------KQMHLAADNLNFEEAARIR 787 A N D Q ++++ + LR K+M + +L FEEAA++R Sbjct: 637 AEAPN---DNQAIAVTHAFPDVDISILRSPDLLAKEIARLEKEMKALSRDLKFEEAAKVR 693 Query: 788 DEIKRLK 794 D++ L+ Sbjct: 694 DKVVGLR 700 >gi|330502895|ref|YP_004379764.1| excinuclease ABC subunit B [Pseudomonas mendocina NK-01] gi|328917181|gb|AEB58012.1| excinuclease ABC subunit B [Pseudomonas mendocina NK-01] Length = 671 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 494/663 (74%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D IVV +VS IYG+GS E Y +M++ L GD ++Q+ LL L + QY R Sbjct: 124 SATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E IS F PLTG+ I+ + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+++IK EL+ RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEHIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P+++LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDEALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW P TI VSATPG +E E G ++EQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ARTQV+D+ EI L G R+L+T LTKRMAEDLT+YL + +++VRY+HS++ T+E Sbjct: 423 VRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD +T S+Q AI ET RRREKQ+ N+ + I P+ V++ + ++++ ++ Sbjct: 543 NLNGKAILYADNMTGSMQRAIGETERRREKQIAFNEANGIVPKGVQKDVKDILEGAVVPG 602 Query: 741 AATT---NISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A + ++ A++ + + + ++ ++ L ++M+ A +L FE AA++RDEI+ Sbjct: 603 ARSNKRKGMAKAAEESARYENELRSPSEITKRIRQLEEKMYALARDLEFEAAAQLRDEIQ 662 Query: 792 RLK 794 +L+ Sbjct: 663 KLR 665 >gi|320156870|ref|YP_004189249.1| excinuclease ABC subunit B [Vibrio vulnificus MO6-24/O] gi|319932182|gb|ADV87046.1| excinuclease ABC subunit B [Vibrio vulnificus MO6-24/O] Length = 676 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/670 (55%), Positives = 491/670 (73%), Gaps = 19/670 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 + + +DY PSGDQP AI QL +G+ + Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 4 LYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 64 APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G E+Y QM++ ++ GD ++Q+++L L + QY R Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 DI RG FRV G+ I++FP+ + A R+ MF ++I+ IS F PLTG K R++ Sbjct: 184 NDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK+EL+ R L +LLE QR+ QR +D+EM+ G Sbjct: 244 IYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPV 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T Sbjct: 424 LEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734 ARN++ K ILYAD+ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ Sbjct: 544 ARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDI 603 Query: 735 ----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + L A ++S + L+ ++ + + L QM+ A NL FE AA Sbjct: 604 TKSRKQKVSKTVPLSKVAEPSLSYNV----LTPQQLEKEITKLEAQMYKHAQNLEFELAA 659 Query: 785 RIRDEIKRLK 794 + RDEI++L+ Sbjct: 660 QKRDEIEKLR 669 >gi|254241832|ref|ZP_04935154.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192] gi|126195210|gb|EAZ59273.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192] Length = 670 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK ELK RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+ M++GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW + P TI VSATPG +E E G ++EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +I + R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVSILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S+Q AIDET RRR KQ+ N+ H I P+ V++ I ++++ ++ Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602 Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++++ G+ ++ L ++M+ A +L FE AA++RD Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658 Query: 789 EIKRLK 794 EI+ L+ Sbjct: 659 EIQTLR 664 >gi|146283328|ref|YP_001173481.1| excinuclease ABC subunit B [Pseudomonas stutzeri A1501] gi|145571533|gb|ABP80639.1| excinuclease ABC, B subunit [Pseudomonas stutzeri A1501] Length = 671 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 487/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+G +SY +M++ + GD ++Q+ELL L QY R Sbjct: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK+EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GEPPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI + R+L T LTKRM+EDLT+YL + +++VRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIRKCVAKEERVLATTLTKRMSEDLTDYLGDHDVKVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S+Q AIDET RRR KQ+ N+ H I P+ VK+ + ++++ + Sbjct: 543 NLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGATVPG 602 Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + + +A+ S + + ++ L ++M L A +L FE AA RDEI Sbjct: 603 SRSKKRRGEAKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARDEIH 662 Query: 792 RLK 794 +L+ Sbjct: 663 KLR 665 >gi|145630876|ref|ZP_01786653.1| excinuclease ABC subunit B [Haemophilus influenzae R3021] gi|144983536|gb|EDJ91004.1| excinuclease ABC subunit B [Haemophilus influenzae R3021] Length = 679 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 488/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ L+ F Sbjct: 667 QLHELREQFVF 677 >gi|319896940|ref|YP_004135135.1| excinulease of nucleotide excision repair, DNA damage recognition component [Haemophilus influenzae F3031] gi|329123296|ref|ZP_08251863.1| excision endonuclease subunit UvrB [Haemophilus aegyptius ATCC 11116] gi|317432444|emb|CBY80799.1| UvrABC system protein B [Haemophilus influenzae F3031] gi|327471420|gb|EGF16869.1| excision endonuclease subunit UvrB [Haemophilus aegyptius ATCC 11116] Length = 679 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|261253549|ref|ZP_05946122.1| excinuclease ABC subunit B [Vibrio orientalis CIP 102891] gi|260936940|gb|EEX92929.1| excinuclease ABC subunit B [Vibrio orientalis CIP 102891] Length = 676 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/669 (56%), Positives = 490/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY PSGDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI + QRPAI++A Sbjct: 5 FDLVSDYQPSGDQPTAIRQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIASAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ ++ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHIRRGDVMDQRDILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A R+ MF ++I+ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGAVKQRDLARYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL+ R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILAAVEEIKLELESRKKYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP++FEE+ + P TI VSATPG++ELE+ G I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPMKFEEFESISPQTIFVSATPGNYELEKSDGEIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+ ET+RRREKQ E+N K I PQ++K I ++++ L Sbjct: 545 RNIAGKAILYADSITKSMEKAMGETSRRREKQQEYNAKLGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A ++ + LSK ++ + L QM+ A +L FE AA+ Sbjct: 602 DIAKGKKQRTSKAVPLSKVAEPSQSYDVMTPQQLDKEISKLEAQMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RD+I +L+S Sbjct: 662 RDQIDKLRS 670 >gi|269962086|ref|ZP_06176440.1| excinuclease ABC subunit B [Vibrio harveyi 1DA3] gi|269833170|gb|EEZ87275.1| excinuclease ABC subunit B [Vibrio harveyi 1DA3] Length = 676 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 494/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK+EL++R +L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP++FEE+ + P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+DET RRREKQ +N + I PQ++K I ++++ L Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA+ Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|319776133|ref|YP_004138621.1| excinulease of nucleotide excision repair [Haemophilus influenzae F3047] gi|317450724|emb|CBY86944.1| excinulease of nucleotide excision repair, DNA damage recognition component [Haemophilus influenzae F3047] Length = 679 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 488/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ L+ F Sbjct: 667 QLHELREQFVF 677 >gi|156975233|ref|YP_001446140.1| excinuclease ABC subunit B [Vibrio harveyi ATCC BAA-1116] gi|156526827|gb|ABU71913.1| hypothetical protein VIBHAR_02961 [Vibrio harveyi ATCC BAA-1116] Length = 676 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 493/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK+EL++R +L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP++FEE+ + P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A Q R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+DET RRREKQ +N + I PQ++K I ++++ L Sbjct: 545 RNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA+ Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|124267474|ref|YP_001021478.1| excinuclease ABC subunit B [Methylibium petroleiphilum PM1] gi|124260249|gb|ABM95243.1| Excinuclease ABC subunit B [Methylibium petroleiphilum PM1] Length = 710 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 487/661 (73%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P+GDQP AI QL+ GI+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 31 FQLFQPYPPAGDQPTAIGQLVDGINDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 90 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF++FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 91 PNKTLAAQLYSEFRDFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 150 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V++VS IYGIG E Y+QM + ++ G + Q++L++ L++ QYKR Sbjct: 151 SATKSLLERRDVIIVATVSAIYGIGKPEDYTQMRLIVRAGGKLGQRDLIAQLIRMQYKRN 210 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+++IFP+ ++A R+ +F ++IE +S F PLTGQ + V +Y Sbjct: 211 ETDFARGTFRVRGDTVDIFPAEHSELAIRIELFDDEIEALSLFDPLTGQIRQKVPRFVVY 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IKEEL+ RL E +G+L+EAQR+EQR +DLEML+ G C+ Sbjct: 271 PSSHYVTPREQVLAAIEGIKEELRNRLAEFVADGKLVEAQRIEQRTRFDLEMLQEIGHCK 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PGEPP TL +Y+P+D+L+F+DESHV I Q+ GM+ GD RK TL EY Sbjct: 331 GIENYSRHLAGSAPGEPPSTLVDYLPKDALMFLDESHVLIGQLGGMFNGDRARKTTLVEY 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP ++E E G +VEQ++RPTGLVDP VE Sbjct: 391 GFRLPSALDNRPLKFEEFETKMRQVVFVSATPATYEQEHA-GNVVEQLVRPTGLVDPVVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+E Sbjct: 450 VRPATHQVDDVLQEIRDRVDANERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDVDTVE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 510 RVEILRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S++ AI ET RRRE+Q+ N +H I P+S+ +++ ++ID + E Sbjct: 570 NLNGKAILYADKITDSMRRAIGETERRRERQIAFNAEHGITPRSINKQVKDLIDGVYSEK 629 Query: 741 AATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 + ++ A+ S+S+K +K L KQM A +L FE+AAR+RD++ L+ Sbjct: 630 SRGDDLKAAQAAAEIESMSEKDLGKRIKLLEKQMLEHARSLEFEKAARVRDQLALLREQA 689 Query: 798 Y 798 + Sbjct: 690 F 690 >gi|171057735|ref|YP_001790084.1| excinuclease ABC subunit B [Leptothrix cholodnii SP-6] gi|170775180|gb|ACB33319.1| excinuclease ABC, B subunit [Leptothrix cholodnii SP-6] Length = 703 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/661 (55%), Positives = 486/661 (73%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P+GDQP AI L+ GI Q LLGVTGSGKTFTMA VI M RPAI+ A Sbjct: 27 FQLFQPYPPAGDQPTAIEGLVSGIQDGLTYQTLLGVTGSGKTFTMANVIARMGRPAIIFA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAY+P+ D +IEK+SSINE I++MR Sbjct: 87 PNKTLAAQLYAEFREFFPKNAVEYFVSYYDYYQPEAYMPQRDLFIEKDSSINEHIEQMRL 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D I+V++VS IYGIG E Y+QM +++GD++ Q+++++ L++ QY R Sbjct: 147 SATKSVLERRDTIIVATVSAIYGIGKPEDYTQMRFIVRVGDTIGQRDVIAQLIRMQYTRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+I+IFP+ ++A R+ +F +++E + F PLTG+ + V +Y Sbjct: 207 DTEFARGTFRVRGDTIDIFPAEHSELAIRLELFDDEVESLQLFDPLTGRVRQKVPRFTVY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL+ RL E +G+L+EAQR+EQR +DLEML+ G C+ Sbjct: 267 PSSHYVTPRERVLAAIEGIKLELRERLAEFVADGKLVEAQRVEQRTRFDLEMLQEVGHCK 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPP TL +Y+P D+L+F+DESHV I Q+ GMY GD RK TL Y Sbjct: 327 GIENYSRHLSGAAPGEPPSTLVDYLPSDALMFLDESHVLIGQLGGMYNGDRARKTTLVAY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRFEE+ + VSATP +E +Q G +VEQ++RPTGLVDP +E Sbjct: 387 GFRLPSAMDNRPLRFEEFERKMRQVVFVSATPADYE-KQHAGQVVEQLVRPTGLVDPLIE 445 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+DV EI L R+L+T LTKRMAE LT+Y+ E ++VRY+HS++ T+E Sbjct: 446 VRPAGSQVDDVLQEIRLRVAINERVLITTLTKRMAEQLTDYMAENGVKVRYLHSDIDTVE 505 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 506 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 565 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD +T+S++ AI ET RRR +Q+EHN H I P+ +++ + E+ID + E Sbjct: 566 NVNGKAILYADKMTESMRKAIGETERRRARQVEHNTLHGITPRGIRKHVKELIDGVYGEK 625 Query: 741 AATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 + +++I A+ +LS+K +K L KQM A NL FE+AARIRD++ +L+ Sbjct: 626 SGKDDLAIMHSVAEVEALSEKDLGKRIKQLEKQMLEHARNLEFEKAARIRDQLAQLREQA 685 Query: 798 Y 798 + Sbjct: 686 F 686 >gi|37679377|ref|NP_933986.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016] gi|37198120|dbj|BAC93957.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016] Length = 680 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/670 (55%), Positives = 491/670 (73%), Gaps = 19/670 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 + + +DY PSGDQP AI QL +G+ + Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 8 LYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILL 67 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 68 APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMR 127 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G E+Y QM++ ++ GD ++Q+++L L + QY R Sbjct: 128 LSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 DI RG FRV G+ I++FP+ + A R+ MF ++I+ IS F PLTG K R++ Sbjct: 188 NDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFT 247 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK+EL+ R L +LLE QR+ QR +D+EM+ G Sbjct: 248 IYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGF 307 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 308 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 367 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+DP Sbjct: 368 EYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPV 427 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T Sbjct: 428 LEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDT 487 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 488 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 547 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734 ARN++ K ILYAD+ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ Sbjct: 548 ARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDI 607 Query: 735 ----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + L A ++S + L+ ++ + + L QM+ A +L FE AA Sbjct: 608 TKSRKQKVSKTVPLSKVAEPSLSYNV----LTPQQLEKEITKLEAQMYKHAQDLEFELAA 663 Query: 785 RIRDEIKRLK 794 + RDEI++L+ Sbjct: 664 QKRDEIEKLR 673 >gi|77917717|ref|YP_355532.1| excinuclease ABC subunit B [Pelobacter carbinolicus DSM 2380] gi|90111043|sp|Q3A8D0|UVRB_PELCD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|77543800|gb|ABA87362.1| Excinuclease ABC subunit B [Pelobacter carbinolicus DSM 2380] Length = 667 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/655 (56%), Positives = 486/655 (74%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++++Y P GDQP AI +L G+ +K Q+LLGVTGSGKTFTMA V+ +QRP +V+A Sbjct: 4 FNLKSNYQPRGDQPQAIEELSTGLQRGDKHQVLLGVTGSGKTFTMANVVAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SSINE+ID+MRH Sbjct: 64 HNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSINEEIDKMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL RND ++VSSVSCIYG+GS E+Y M+++L+ G +++ LL +LV+ QY R Sbjct: 124 SATRSLLSRNDVLIVSSVSCIYGLGSPEAYYGMLIRLETGMQLDRNALLKNLVEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EIFP++ E A R+ FG++I+ I E PL G+ + +E ++ Sbjct: 184 DVDFHRGTFRVRGDTVEIFPAYEEKRALRIEFFGDEIDAICEIDPLRGKVLDRLERTAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV RPTL+ A++ I++EL+ RL + LLEAQR+EQR +D+EM+E G CQ Sbjct: 244 PASHYVATRPTLDRAIREIQDELRERLTWFRENNMLLEAQRIEQRTMFDIEMIEEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G+PP TLF+Y P+D+LLF+DESHVT+ QI MYRGD RK TL Y Sbjct: 304 GIENYSRFLDGRQAGQPPATLFDYFPDDALLFIDESHVTVSQIGAMYRGDRSRKETLVRY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPL FEE+ TI VSATP +EL + G++VEQIIRPTGL+DPP++ Sbjct: 364 GFRMPSALDNRPLTFEEFEAKGIQTIYVSATPADYELRKADGVVVEQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A+ QV+D+ EI L +Q R+L+T LTKRMAE+LT YL E I+VRY+HS++ T+E Sbjct: 424 VRPAKDQVDDLIHEIRLTIKQNERVLVTTLTKRMAEELTGYLGELGIKVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+R+LR G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT GRAAR Sbjct: 484 RMQILRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VI+YAD IT+S++ +DET RRR QL +N++H I PQ+VK+ + +++ I +D Sbjct: 544 NVAGRVIMYADRITRSMRACLDETERRRTAQLAYNEEHGITPQTVKKSLRSILEDIAEKD 603 Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A++L + + K + ++++M AA NL FE+AA +RD + L Sbjct: 604 --YVELPQVAEELGDYHTPQDVKNEIARVKEEMLAAAANLEFEKAAELRDRMLEL 656 >gi|16273166|ref|NP_439403.1| excinuclease ABC subunit B [Haemophilus influenzae Rd KW20] gi|260581165|ref|ZP_05848985.1| excinuclease ABC, B subunit [Haemophilus influenzae RdAW] gi|1174918|sp|P45125|UVRB_HAEIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|1574178|gb|AAC22897.1| excinuclease ABC, subunit B (uvrB) [Haemophilus influenzae Rd KW20] gi|260092193|gb|EEW76136.1| excinuclease ABC, B subunit [Haemophilus influenzae RdAW] Length = 679 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPPDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|262278210|ref|ZP_06055995.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus RUH2202] gi|262258561|gb|EEY77294.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus RUH2202] Length = 673 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/664 (57%), Positives = 481/664 (72%), Gaps = 10/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V I IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVSRITIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+YIPED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPSGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ IVEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 IRPVLTQVDDVLSEINIRKNLNERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 NV K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S ++++ ID +L Sbjct: 546 NVKGKAILYADRITDSMQKAIDETDRRRAKQIEFNELHGITPRSAVRQVIKEIDSGEVLS 605 Query: 739 EDAATTNISIDAQQLSLSK-------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D + AQ LS + K H+ L K M A+ +L FE+AARIRDEI Sbjct: 606 DDEIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKDMLKASKDLQFEQAARIRDEII 665 Query: 792 RLKS 795 RLK+ Sbjct: 666 RLKA 669 >gi|153835330|ref|ZP_01987997.1| excinuclease ABC, B subunit [Vibrio harveyi HY01] gi|148868170|gb|EDL67325.1| excinuclease ABC, B subunit [Vibrio harveyi HY01] Length = 676 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 493/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK+EL++R +L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP++FEE+ + P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A Q R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+DET RRREKQ +N + I PQ++K I ++++ L Sbjct: 545 RNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + +Q+ LSK ++ + + L M+ A +L FE AA+ Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEGAMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|85712417|ref|ZP_01043466.1| excinuclease ABC subunit B [Idiomarina baltica OS145] gi|85693695|gb|EAQ31644.1| excinuclease ABC subunit B [Idiomarina baltica OS145] Length = 676 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/667 (55%), Positives = 491/667 (73%), Gaps = 15/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI ++L+ + + Q LLGVTGSGKTFTMA VI QRP +++A Sbjct: 5 FELISSYQPAGDQPAAIEKILENLDAGLAHQTLLGVTGSGKTFTMANVIAQSQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G ESY +M++ L+ GD ++Q+++L L + QYKR Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPESYMKMMLHLRRGDIIDQRDILRRLAQLQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKI 379 D RGT+RV G+ I+IFP+ E++A RV +F N+++ IS F PLTGQ +V I Sbjct: 185 DAAFERGTYRVRGEVIDIFPAESEELAVRVELFDNEVDRISFFEPLTGQVTEADVARATI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR L A++ IK+ELK R L K+ +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREVLVEAIEKIKDELKDRRDVLLKQNKLLEEQRINQRTQFDIEMMLELGYC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGEPPPTL +Y+P+D+LL +DESHVT+ Q+ MY+GD RK L E Sbjct: 305 SGIENYSRYLSGRAPGEPPPTLMDYLPDDALLIIDESHVTVSQVGAMYKGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ + P T+ VSATPG +ELE+ G +VEQ++RPTGLVDP + Sbjct: 365 YGFRLPSALDNRPLKFDEFEAIAPQTVYVSATPGKYELERSSGEVVEQVVRPTGLVDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R+ TQV+D+ E+ L ++ R+L T LTK+MAEDL++YL E IRVRY+HS++ T+ Sbjct: 425 EVRAVATQVDDLMSEVRLRVEKEERVLATTLTKKMAEDLSDYLDEHGIRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 485 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILY D IT S+Q AI+ET RRREKQ+ N++H I PQ + +K+ +V+D L + Sbjct: 545 RNVNGKAILYGDRITGSMQRAIEETDRRREKQIAFNEEHGITPQKLNKKVTDVMD--LGQ 602 Query: 740 DA---------ATTNISIDAQQLSLSKKKGKAHLKSL---RKQMHLAADNLNFEEAARIR 787 A ++ ++ K A +K + K+M+ AA NL FE+AA++R Sbjct: 603 GGANRKNRAAKAVAEVASGYDPRTVMIKDTNAVIKEIEAKEKEMYEAAQNLEFEKAAQLR 662 Query: 788 DEIKRLK 794 D+IK L+ Sbjct: 663 DDIKTLR 669 >gi|325275797|ref|ZP_08141666.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51] gi|324099068|gb|EGB97045.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51] Length = 671 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/663 (56%), Positives = 484/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI+ +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD I+IFP+ + A RV +F +++E I+ F PLTG+ R + Y Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK ELK RL L K +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLDAVEGIKAELKDRLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S+Q AIDET RRREKQ+ N+ + I P+ V + I ++++ + Sbjct: 543 NLNGRAILYADNITGSMQRAIDETERRREKQIAFNEANGIVPKGVIKDITDIMEGATVPG 602 Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A + A+ S + + +K L ++M A +L FE AA++RDEI Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIT 662 Query: 792 RLK 794 +L+ Sbjct: 663 KLR 665 >gi|152978761|ref|YP_001344390.1| excinuclease ABC subunit B [Actinobacillus succinogenes 130Z] gi|150840484|gb|ABR74455.1| excinuclease ABC, B subunit [Actinobacillus succinogenes 130Z] Length = 692 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/667 (56%), Positives = 488/667 (73%), Gaps = 6/667 (0%) Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 H + F + +D+ PSGDQP+AIA+L++ ++ Q LLGVTGSGKTFT+A VI + Sbjct: 17 HKINTKPFILHSDFKPSGDQPSAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLN 76 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ Sbjct: 77 RPAMLLAPNKTLAAQLYAEMKTFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASIND 136 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 QI++MR SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G ++Q+++L+ L Sbjct: 137 QIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILARLA 196 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 + QY R D RGTFRV G+ I+IFP+ +D A R+ +F N+IE +S F PLTG Sbjct: 197 ELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDQAVRIELFDNEIERLSLFDPLTGTGFGR 256 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 + +Y +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ Sbjct: 257 IPRFTVYPKTHYVTPREQILDAIEKIKTELAKRREYFIKENKLLEEQRITQRTLFDIEMM 316 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C IENYSRYL+GRN GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD R Sbjct: 317 NELGYCSGIENYSRYLSGRNEGEPPPTLFDYVPADGLLIIDESHVTVPQIGGMYRGDRSR 376 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTG Sbjct: 377 KETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTG 436 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP +EIR QV+D+ E A++ RIL+T LTKRMAEDLT+YL E +RVRY+H Sbjct: 437 LLDPEIEIRPVAIQVDDLLSESRQRAEKNERILVTTLTKRMAEDLTDYLEEHGVRVRYLH 496 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQ Sbjct: 497 SDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 556 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAARN+ K ILYAD IT+S+ AI ET RRREKQ+++N++H I PQ + +K+ E++ Sbjct: 557 TIGRAARNLKGKAILYADRITQSMDKAITETNRRREKQMKYNEEHGIIPQGLNKKVGELL 616 Query: 734 D----PILLEDAATTNISIDAQQLSLSK--KKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D + + I + L K K+ + +K L +QM+ A +L FE+AA +R Sbjct: 617 DIGQNSNRNKGKSRNKIENSSAHYKLPKTPKELQKQIKKLEQQMYKFAQDLEFEKAAAMR 676 Query: 788 DEIKRLK 794 D++ +L+ Sbjct: 677 DQLHQLR 683 >gi|167032515|ref|YP_001667746.1| excinuclease ABC subunit B [Pseudomonas putida GB-1] gi|166859003|gb|ABY97410.1| excinuclease ABC, B subunit [Pseudomonas putida GB-1] Length = 671 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/663 (56%), Positives = 485/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI+ +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQHVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD I+IFP+ + A R+ +F +++E I+ F PLTG+ R + Y Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IKEELK RL L K +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD +T S+Q AIDET RRREKQ+ N+ + I P+ V + I ++++ + Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDILEGATVPG 602 Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A + A+ S + + +K L ++M A +L FE AA++RDEI Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIS 662 Query: 792 RLK 794 +L+ Sbjct: 663 QLR 665 >gi|56478529|ref|YP_160118.1| excinuclease ABC subunit B [Aromatoleum aromaticum EbN1] gi|81821033|sp|Q5P0E7|UVRB_AZOSE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56314572|emb|CAI09217.1| Excinuclease ABC subunit B [Aromatoleum aromaticum EbN1] Length = 685 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/668 (55%), Positives = 486/668 (72%), Gaps = 8/668 (1%) Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 ITF F++ + P+GDQPAAI L +GI Q LLGVTGSGKT+TMA VI Sbjct: 11 ITFADSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCG 70 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPA+V+APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE Sbjct: 71 RPALVLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE 130 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 I++MR SAT+SL+ER D ++V++VSCIYGIG Y MI+ L+ G+ + ++L+ LV Sbjct: 131 HIEQMRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLV 190 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY R DI RGTFRV GD I++FP+ ++A R+ MF +++E ++ F PLTG + Sbjct: 191 AMQYTRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQK 250 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 + +Y +SHYVTPR T+ A++ IK+EL+ R + G+L+EAQR+EQR +DLEML Sbjct: 251 LVRFTVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEML 310 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C+ IENYSR+L+GR GEPPPTL +Y+P D+LLFVDESHV+IPQ+ GMY+GD R Sbjct: 311 NEMGFCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSR 370 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K L YGFRLPS +DNRPL+FEE+ L P TI VSATP ++E E QG +VEQ++RPTG Sbjct: 371 KENLVGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEH-QGQVVEQVVRPTG 429 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP +++R A TQV+D+ E G R+L+T LTKRMAEDLT+YL E IRVRY+H Sbjct: 430 LIDPAIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLH 489 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQ Sbjct: 490 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 549 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAAR++N + ILYAD +T+S++ AIDET RRR KQ+ N+ + I P++V ++I ++I Sbjct: 550 TIGRAARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDII 609 Query: 734 DPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D + D S+ + S+++K ++ L K+M A NL FE+AA RDE+ Sbjct: 610 DGVYGGDVERDGRSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDEL 669 Query: 791 KRLKSSPY 798 RL+ + Sbjct: 670 FRLRQRTF 677 >gi|254786424|ref|YP_003073853.1| excinuclease ABC subunit B [Teredinibacter turnerae T7901] gi|237684197|gb|ACR11461.1| excinuclease ABC, B subunit [Teredinibacter turnerae T7901] Length = 671 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/662 (55%), Positives = 485/662 (73%), Gaps = 7/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L +G+ + Q LLGVTGSGKTFT+A ++E +QRP ++MA Sbjct: 10 FKVNSKFKPAGDQPAAIEKLYQGVEAGLAHQTLLGVTGSGKTFTIANLVEKLQRPTMIMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+NE I++MR Sbjct: 70 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER+D ++V++VS IYG+G ++Y +M++ L GD ++Q+ +L L + QY R Sbjct: 130 SATKALMERDDALIVATVSAIYGLGDPDAYLKMMLHLSRGDQIDQRAILRRLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV G+ I++FP+ E A R+ +F +++E+IS F PLTG+ + + IY Sbjct: 190 DIDFGRGTYRVRGEIIDVFPADSEIEAVRIELFDDEVEQISSFDPLTGEILARLPRCTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A+ +I+EE++ RL + +L+EAQRLEQR YD+EM+ G C Sbjct: 250 PKSHYVTPRQTILNAVDFIEEEMQERLEQFRGMDKLVEAQRLEQRTKYDMEMMRELGYCN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P++SLL +DESHVT+PQI GMY+GD RK TL EY Sbjct: 310 GIENYSRYLSGRAAGMPPPTLFDYLPKNSLLVIDESHVTVPQIGGMYKGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW L P + VSATPG++E E QG IVEQ++RPTGLVDP +E Sbjct: 370 GFRLPSALDNRPMRFDEWEQLAPQMVFVSATPGNYEAEH-QGQIVEQVVRPTGLVDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D EI + R+L+TVLTKRMAEDLTE+L E +RVRY+HS++ T+E Sbjct: 429 VRPAGTQVDDCLSEIRKRVKAKDRVLITVLTKRMAEDLTEFLMEHGVRVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAI DADKEGFLRS SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV + ILYAD IT S+Q A+DET RRREKQ+ N+ + I P+ + + I ++++ Sbjct: 549 NVKGRAILYADNITGSMQRAMDETNRRREKQIAFNEANGITPKGIVKSIADIMEGARAPG 608 Query: 741 A---ATTNISIDAQQLSLSKKKGK---AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ A + GK H+ L K M AA NL FE+AA IRD+I LK Sbjct: 609 ARPGSKRKVAEKAASYATDVPAGKDVWHHIADLEKDMLEAAKNLEFEKAAAIRDKIHELK 668 Query: 795 SS 796 Sbjct: 669 EG 670 >gi|68250221|ref|YP_249333.1| excinuclease ABC subunit B [Haemophilus influenzae 86-028NP] gi|81335357|sp|Q4QJX4|UVRB_HAEI8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|68058420|gb|AAX88673.1| UvrABC system protein B [Haemophilus influenzae 86-028NP] Length = 679 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|291614226|ref|YP_003524383.1| excinuclease ABC, B subunit [Sideroxydans lithotrophicus ES-1] gi|291584338|gb|ADE11996.1| excinuclease ABC, B subunit [Sideroxydans lithotrophicus ES-1] Length = 674 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/674 (56%), Positives = 490/674 (72%), Gaps = 8/674 (1%) Query: 136 KDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 K ITF + + + PSGDQP AIAQL++GI Q LLGVTGSGKTFTMA VI Sbjct: 2 KTITFPDSPYLLHLPFEPSGDQPTAIAQLVEGIEDGLAYQTLLGVTGSGKTFTMANVIAR 61 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 RPAI+MAPNK LAAQLYSE ++FFP NAVEYFVSYYDYYQPEAYVP D YIEK+SSI Sbjct: 62 TGRPAILMAPNKTLAAQLYSEMRDFFPENAVEYFVSYYDYYQPEAYVPSRDVYIEKDSSI 121 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 NEQI++MR SAT+S+LER DC++V++VS IYGIG Y MI+ L+ + + Q++++ Sbjct: 122 NEQIEQMRLSATKSMLERQDCVIVATVSAIYGIGDPVDYHGMILHLREHEKMAQRDVIQR 181 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV QY+R DI RG FRV GD I+IFP+ + A RV++F +++E +S F PLTG Sbjct: 182 LVAMQYERNDIDFNRGHFRVRGDVIDIFPAESSENALRVTLFDDEVESLSLFDPLTGHIQ 241 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 V +Y +SHYVTPR T A++ IK EL R+ KE +L+EAQR+EQR +DLE Sbjct: 242 TRVPRYTVYPSSHYVTPRETTLHAIETIKVELAERIAFFVKENKLVEAQRIEQRTRHDLE 301 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 ML G + IENYSR+L+GR P E PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD Sbjct: 302 MLAEIGFTKGIENYSRHLSGRGPNEAPPTLMDYLPPNALMIIDESHVTIPQIGGMYKGDR 361 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L YGFRLPS +DNRPLRF+E+ + TI VSATP ++E E G +VEQ++RP Sbjct: 362 ARKENLVNYGFRLPSALDNRPLRFDEFEKIMRQTIFVSATPSTYEAEHT-GQVVEQVVRP 420 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP +++R A QV+D+ E+ L G R+L+T LTKRMAEDLTEY E I+VRY Sbjct: 421 TGLIDPTIDVRPATNQVDDLMSEVTLRTNVGERVLVTTLTKRMAEDLTEYFSEHGIKVRY 480 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS+++T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SL Sbjct: 481 LHSDIETVERVEIIRDLRLGMFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 540 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAAR+++ ILYAD IT S++ AIDET RRR KQ+ +N+ H I PQSV ++I + Sbjct: 541 IQTIGRAARHLHGTAILYADRITDSMRKAIDETDRRRAKQVAYNEAHGITPQSVVKRIKD 600 Query: 732 VIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 +ID DA ++ + +A+ L++S+K+ + L K+M AA NL FE+AA++RD Sbjct: 601 IIDTEYDMDAERKSLKLAQTEAKYLAMSEKEVSREIAKLEKEMLQAAKNLEFEKAAQLRD 660 Query: 789 EIKRLKSSPYFQGL 802 ++K+L+ S + L Sbjct: 661 QLKKLRESVFLSPL 674 >gi|50085644|ref|YP_047154.1| excinuclease ABC subunit B [Acinetobacter sp. ADP1] gi|81827402|sp|Q6F9D2|UVRB_ACIAD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|49531620|emb|CAG69332.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Acinetobacter sp. ADP1] Length = 675 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/664 (56%), Positives = 488/664 (73%), Gaps = 10/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T+Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 9 FDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 69 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G E+Y +M++ + GD + + +L+ LV+ QY R Sbjct: 129 SATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ +++FP+ + A R+ +F ++++ I F PLTG+ R V + IY Sbjct: 189 ELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRVTIY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L+ A++ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 249 PKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR+PG PPTLF+YIPED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 309 GIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTT+ VSATP +ELE+ IVEQ++RPTGL+DP +E Sbjct: 369 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EIN+ + R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 428 IRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV-IDPILL 738 N+ K ILYAD +T S+Q AIDET RRREKQ+E NK H I P+S V++K+ E+ + Sbjct: 548 NIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGEVFN 607 Query: 739 EDAATTNISIDAQQLSLSKKKGKA-------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D IS A+ LS ++ A H+ L K+M A+ L FE+AAR+RDEI Sbjct: 608 DDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRDEIL 667 Query: 792 RLKS 795 RLK+ Sbjct: 668 RLKA 671 >gi|298507282|gb|ADI86005.1| excinuclease ABC, B subunit [Geobacter sulfurreducens KN400] Length = 664 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/654 (56%), Positives = 474/654 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AIA+L +GI ++ Q+LLGVTGSGKTFTMA VI AM RPA+V+A Sbjct: 4 FRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAMNRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EF+ FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH Sbjct: 64 PNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLL R D I+V+SVSCIYGIGS Y M + GD + ELL LV QY+R Sbjct: 124 AATRSLLTRRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+H + A+R+ FG+ ++ ISE PL G ++ + +Y Sbjct: 184 DLDFHRGTFRVRGDIVEIFPAHEGERAYRIEFFGDTVDAISEIDPLRGVVVQRLTKCAVY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R TL+ AM+ I+ +L+ RL + L+EAQRLEQR +DLEM+E G CQ Sbjct: 244 PASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y P D +LFVDESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL F E+ ++ VSATP +EL+Q G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E+ +G R+L+T LTKRMAEDLT+Y + +RVRY+HS++ T++ Sbjct: 424 VRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDIDTIQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLR+G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VI+YADT+T S+Q +DET RRR Q N +H I PQ+VK+ + +++ I D Sbjct: 544 NVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTILESIEERD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + ++ +S + +K LRK+M AA L FE AA +R++IK+L+ Sbjct: 604 YYTVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADLREQIKKLE 657 >gi|190573619|ref|YP_001971464.1| excinuclease ABC subunit B [Stenotrophomonas maltophilia K279a] gi|190011541|emb|CAQ45159.1| putative UvrABC system protein B (protein UvrB) (excinuclease ABC subunit B) [Stenotrophomonas maltophilia K279a] Length = 674 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/667 (55%), Positives = 487/667 (73%), Gaps = 11/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L + Q LLGVTGSGKT+T+A VI+ +Q+P ++MA Sbjct: 5 FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D IVV++VS IYG+G+ E Y + + L G+ ++Q++L++ L + QY R Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV G+ I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNMQRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R + A++ IK ELK RL +L E +L+EAQRL QR +D+EM+ G C Sbjct: 245 PKTHYATTRERVLAAVETIKVELKERLEQLYAENKLVEAQRLAQRTQFDIEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E+ Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P I VSATPG +E + I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEARCPRAIYVSATPGPYEYREAGDEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E N + G R+L+T LTKRMAE+LTEYL E IRVRY+HS+V T+E Sbjct: 425 IRPVGTQVDDLMSEANARIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 NV K ILYAD +T+S+Q AIDET RRR KQ+E+N++H I P+SV I++V++ Sbjct: 545 NVRGKAILYADKVTRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604 Query: 735 ----PILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + ++ D A SL + A LK+L +QM+ A +L FE+AAR+RD+ Sbjct: 605 AEKEAKKGKGKGRAGVAEDGADYRSLGPAQLAARLKALEQQMYQHAKDLEFEDAARVRDQ 664 Query: 790 IKRLKSS 796 I++LK + Sbjct: 665 IRQLKEA 671 >gi|169632767|ref|YP_001706503.1| excinuclease ABC subunit B [Acinetobacter baumannii SDF] gi|169151559|emb|CAP00329.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Acinetobacter baumannii] Length = 673 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/666 (56%), Positives = 486/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V ++E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSREEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR+ GE PPTLF+Y+PED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRSAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732 NV K ILYADTIT S++ AIDET RRR KQ+E N+ H I P+S V++ + E+ Sbjct: 546 NVKGKAILYADTITDSMRKAIDETERRRTKQIEFNELHGITPRSAVRQAVKEIDTGEVLS 605 Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ID +LE A +S D + + K H+ L K+M A+ +L FE+AARIRDE Sbjct: 606 DDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663 Query: 790 IKRLKS 795 I RLK+ Sbjct: 664 IVRLKA 669 >gi|148548992|ref|YP_001269094.1| excinuclease ABC subunit B [Pseudomonas putida F1] gi|148513050|gb|ABQ79910.1| Excinuclease ABC subunit B [Pseudomonas putida F1] Length = 671 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/663 (55%), Positives = 485/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI+ +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD I+IFP+ + A R+ +F +++E I+ F PLTG+ R + Y Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IKEELK RL L K +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD +T S+Q AIDET RRREKQ+ N+ + I P+ V + I ++++ + Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGAAVPG 602 Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A + A+ S + + +K L ++M A +L FE AA++RDEI Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIA 662 Query: 792 RLK 794 +L+ Sbjct: 663 QLR 665 >gi|145636889|ref|ZP_01792554.1| excinuclease ABC subunit B [Haemophilus influenzae PittHH] gi|145269970|gb|EDK09908.1| excinuclease ABC subunit B [Haemophilus influenzae PittHH] Length = 679 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRR KQ+++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRRAKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|26988700|ref|NP_744125.1| excinuclease ABC subunit B [Pseudomonas putida KT2440] gi|81840710|sp|Q88LF9|UVRB_PSEPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|24983488|gb|AAN67589.1|AE016388_9 excinuclease ABC, B subunit [Pseudomonas putida KT2440] gi|313499918|gb|ADR61284.1| UvrB [Pseudomonas putida BIRD-1] Length = 671 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/663 (55%), Positives = 485/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI+ +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD I+IFP+ + A R+ +F +++E I+ F PLTG+ R + Y Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IKEELK RL L K +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRP+RF+EW + P TI VSATPG +E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD +T S+Q AIDET RRREKQ+ N+ + I P+ V + I ++++ + Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGATVPG 602 Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A + A+ S + + +K L ++M A +L FE AA++RDEI Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIA 662 Query: 792 RLK 794 +L+ Sbjct: 663 QLR 665 >gi|254251900|ref|ZP_04945218.1| Helicase subunit of the DNA excision repair complex [Burkholderia dolosa AUO158] gi|124894509|gb|EAY68389.1| Helicase subunit of the DNA excision repair complex [Burkholderia dolosa AUO158] Length = 707 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/680 (55%), Positives = 493/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+H Q LLGVTGSGKTFTMA Sbjct: 24 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVHDGLSFQTLLGVTGSGKTFTMANT 83 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 84 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRSGDKLGQREV 203 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 263 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL +EG+L+EAQRLEQR + Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 323 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++F+DESHV I Q++GMY Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAVMFLDESHVLIGQLNGMYN 383 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQV 442 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EIN G R+L+TVLTKRMAE LTE+L + I+ Sbjct: 443 VRPTGLVDPEIEVRPASTQVDDVLTEINARVTAGERVLITVLTKRMAEQLTEFLADHGIK 502 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K I P+ V ++ Sbjct: 563 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 622 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 623 IKDIIDGVYNPDDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 681 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 682 ATRDQLALLRERVFGANVGD 701 >gi|145299263|ref|YP_001142104.1| excinuclease ABC subunit B [Aeromonas salmonicida subsp. salmonicida A449] gi|142852035|gb|ABO90356.1| uvrABC system subunit B [Aeromonas salmonicida subsp. salmonicida A449] Length = 670 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/665 (55%), Positives = 484/665 (72%), Gaps = 14/665 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ + + P+GDQP AIA+LL GI S Q LLGVTGSGKTFTMA VI + RP ++M Sbjct: 4 LFQLASQFQPAGDQPEAIARLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G ++Y M++ LK+GD + Q+++L L + QY R Sbjct: 124 LSATKALLERRDVIIVASVSAIYGLGDPQAYLSMMLHLKVGDVINQRDILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ RGTFRV G+ I+I+P+ + +A RV +F ++E +S+F PLTG + V I Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HY TPR T+ A+++IKEELK R +L +L+E QR+ QR +D+EM++ G C Sbjct: 244 YPKTHYATPRETILGAIEHIKEELKSRREQLLSLNKLVEEQRISQRTQFDMEMMQELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 304 SGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ L P T+ VSATPG +EL + +V+Q++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELGKSGDDVVQQVVRPTGLLDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI L R+L+T LTKRM+EDLTEYL + ++RVRY+HS++ T+ Sbjct: 424 EVRPVTTQVDDLLSEIRLRVAVEERVLVTTLTKRMSEDLTEYLADHDVRVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KVILY D+IT S+++AI+ET RRR Q HN +H I P+ + + + +V+D Sbjct: 544 RNLNGKVILYGDSITNSMRVAIEETERRRTLQHAHNLEHGITPKGLNKSVGDVMDMGGSR 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRDE 789 A T ++ +G+ H++S + +QM A +L FE+AA +RD+ Sbjct: 604 SAGKTGRG----GRKAAEPQGEYHVRSAGEIAKEIKRMEEQMFQHARDLEFEQAAALRDQ 659 Query: 790 IKRLK 794 I++L+ Sbjct: 660 IQQLR 664 >gi|260582944|ref|ZP_05850728.1| excinuclease ABC, B subunit [Haemophilus influenzae NT127] gi|260094044|gb|EEW77948.1| excinuclease ABC, B subunit [Haemophilus influenzae NT127] Length = 679 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSL------------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ + + K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMVAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|332305739|ref|YP_004433590.1| excinuclease ABC, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173068|gb|AEE22322.1| excinuclease ABC, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 669 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/662 (55%), Positives = 477/662 (72%), Gaps = 12/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI L++G+ S Q LLGVTGSGKTFTMA VI +QRP +++A Sbjct: 5 FQLTSNYSPAGDQPKAIQALVEGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++VSSVS IYG+G +SY +M++ + GD + Q+++L L + QY R Sbjct: 125 SATKALMERRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD I+IFP+ E A RV +F ++E IS F PLTG + V I+ Sbjct: 185 DIAFERGTFRVRGDVIDIFPADSEREAVRVELFDEEVERISIFDPLTGAVEKTVARATIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+++IKEELK R +L +L+E QR+ QR +D+EM++ G C Sbjct: 245 PKTHYVTPREKILDAVEHIKEELKERKAQLLSVNKLVEEQRISQRCQFDMEMMQELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTL +Y P D L+F+DESHVT+ QI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + P TI VSATPG +EL + IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKAPDDIVEQVVRPTGLIDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI R+L+T LTKRM+EDL+EYL E N++ RY+HS++ T+E Sbjct: 425 IRPVGTQVDDLLSEIEKCVAVNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 ++N + ILYAD IT S+Q AIDET RRREKQ EHNKKHNI P + + I +++D Sbjct: 545 HINGRAILYADRITGSMQRAIDETNRRREKQREHNKKHNIVPTQLNKPITDIMDVGEGTG 604 Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++L A T + +S ++ L K+M A +L FE+AA +RDE++ Sbjct: 605 QGKVMLRKVAETGKKYNG----MSAPDLMKNIAELEKKMFQMAKDLEFEQAASLRDEVET 660 Query: 793 LK 794 L+ Sbjct: 661 LR 662 >gi|87122161|ref|ZP_01078044.1| excinuclease ABC, B subunit [Marinomonas sp. MED121] gi|86162481|gb|EAQ63763.1| excinuclease ABC, B subunit [Marinomonas sp. MED121] Length = 676 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/665 (56%), Positives = 486/665 (73%), Gaps = 13/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +GI + Q LLGVTGSGKTFT+A V+ +RP I+MA Sbjct: 5 FEVVSQFSPAGDQPKAIEKLTQGIEAGLAHQTLLGVTGSGKTFTIANVVAKAKRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I++FP+ ED A R+ +F ++I+ ++ F PLT + IR V + IY Sbjct: 185 DVVFERGNFRVRGDVIDVFPADSEDTAVRIELFDDEIDNLAFFDPLTNKTIRKVPRLTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A++ IK EL RL +L+ +L+E QRLEQR YDLEM++ G C Sbjct: 245 PKTHYVTPRETVMDAIERIKVELDERLQQLKYLDKLVELQRLEQRTRYDLEMMQELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P ++LL +DESHVT+PQI MY+GD RK L EY Sbjct: 305 GIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW ++P TI+VSATPG +E E Q +VEQI+RPTGL+DPPVE Sbjct: 365 GFRLPSALDNRPMRFEEWEQIKPQTILVSATPGKYEAEH-QDWVVEQIVRPTGLIDPPVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN +G RIL+T LTKRMAEDLT YLYE IRVRY+HS++ T+E Sbjct: 424 IRPVATQVDDLLSEINKRLPKGERILVTTLTKRMAEDLTSYLYEHGIRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT SI+ A+ ET RRR KQ HNK+H I P+ V + + ++++ Sbjct: 544 NINGRAILYADRITGSIERAMAETDRRRAKQEAHNKEHGIVPKGVSKSVQDIMEGSYNPG 603 Query: 741 A-----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A A T+ + + KA +K L+K+M A++NL FE AA RD+ Sbjct: 604 AGKGKQSKAKKVAETSADYKVESMDDVADVRKAIVK-LQKEMVEASENLKFELAAGYRDQ 662 Query: 790 IKRLK 794 I+ L+ Sbjct: 663 IRSLQ 667 >gi|39998352|ref|NP_954303.1| excinuclease ABC subunit B [Geobacter sulfurreducens PCA] gi|81831945|sp|Q747K3|UVRB_GEOSL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|39985298|gb|AAR36653.1| excinuclease ABC, B subunit [Geobacter sulfurreducens PCA] Length = 664 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/654 (56%), Positives = 474/654 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AIA+L +GI ++ Q+LLGVTGSGKTFTMA VI A+ RPA+V+A Sbjct: 4 FRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAVNRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EF+ FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH Sbjct: 64 PNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLL R D I+V+SVSCIYGIGS Y M + GD + ELL LV QY+R Sbjct: 124 AATRSLLTRRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+H + A+R+ FG+ ++ ISE PL G ++ + +Y Sbjct: 184 DLDFHRGTFRVRGDIVEIFPAHEGERAYRIEFFGDTVDAISEIDPLRGVVVQRLTKCAVY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R TL+ AM+ I+ +L+ RL + L+EAQRLEQR +DLEM+E G CQ Sbjct: 244 PASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y P D +LFVDESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL F E+ ++ VSATP +EL+Q G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E+ +G R+L+T LTKRMAEDLT+Y + +RVRY+HS++ T++ Sbjct: 424 VRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDIDTIQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLR+G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VI+YADT+T S+Q +DET RRR Q N +H I PQ+VK+ + +++ I D Sbjct: 544 NVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTILESIEERD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + ++ +S + +K LRK+M AA L FE AA +RD+IK+L+ Sbjct: 604 YYTVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADLRDQIKKLE 657 >gi|254507800|ref|ZP_05119931.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus 16] gi|219549325|gb|EED26319.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus 16] Length = 676 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/668 (55%), Positives = 491/668 (73%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 FELVSDYQPSGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAKAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G E+Y QM++ ++ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVLDQRDILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A R+ MF ++I+ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISIFDPLTGVVKQRDLPRFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL+ R L + +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELESRKKYLLENNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRKEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP++FEE+ + P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYELEKSDNEIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRSVKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ K ILYAD+ITKS++ A+DET RRREKQ E+N K I PQ++K I ++++ L Sbjct: 545 RNVSGKAILYADSITKSMKKAMDETNRRREKQQEYNAKMGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + ++ + LSK ++ + + L QM+ A +L FE AA Sbjct: 602 DITKSKKQRVSKAVPLSKVAESSQRYDVMTPQQLEKEISKLEAQMYQHAQDLEFELAAEK 661 Query: 787 RDEIKRLK 794 RD+I++L+ Sbjct: 662 RDQIEKLR 669 >gi|302188913|ref|ZP_07265586.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae 642] Length = 671 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/665 (56%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQL N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|304310697|ref|YP_003810295.1| Helicase subunit of the DNA excision repair complex [gamma proteobacterium HdN1] gi|301796430|emb|CBL44638.1| Helicase subunit of the DNA excision repair complex [gamma proteobacterium HdN1] Length = 676 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/668 (55%), Positives = 488/668 (73%), Gaps = 12/668 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AI QL+ G+ S Q LLGVTGSGKTFT+A VIEA+QRP +V+ Sbjct: 9 FQISSTYKPAGDQPEAIRQLVDGLESGLSHQTLLGVTGSGKTFTIANVIEAVQRPTLVLV 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSY+DYYQPEAYVP +DTYIEK+SS+N+ I++MR Sbjct: 69 HNKTLAAQLYGEFKEFFPNNAVEYFVSYFDYYQPEAYVPSSDTYIEKDSSVNDHIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER+D I+V++VSCIYG+G +Y +M++ L GD++EQ+ LL L + QY R Sbjct: 129 SATKALMERSDVIIVATVSCIYGLGDPATYLKMVLHLDRGDAMEQRTLLRRLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R T+RV GD ++IFP+ + A RV +F ++IE +S F PLTG +R V ++ Sbjct: 189 EMDFRRATYRVRGDVVDIFPAESDAEAIRVELFDDEIENLSFFDPLTGAILRRVPRATVF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ AM+ IK EL++RL EL G+L+E QRL +R +DLEM++ G C Sbjct: 249 PKTHYVTPRETMLGAMEAIKAELRLRLDELSGAGKLIEHQRLGERTRFDLEMMQELGYCN 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G+ GEPP +LF+Y+P ++LL +DESHVT+PQ+ MYRGD RK TL +Y Sbjct: 309 GIENYSRHLSGKPQGEPPASLFDYLPANALLVIDESHVTLPQLGAMYRGDRSRKETLVQY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+EW P I VSATP +E E QG +VEQ++RPTGLVDP +E Sbjct: 369 GFRLPSALDNRPLRFDEWEARAPQMIFVSATPAQYEAEH-QGQVVEQVVRPTGLVDPLIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ + I G R+L+T LTKRMAEDLTE+ E+N++VRY+HS++ T+E Sbjct: 428 VRPASHQVDDLLERIRERVAVGERVLVTTLTKRMAEDLTEFFNEQNVKVRYLHSDIGTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVA+LDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 NVN K ILYAD +T S++ AIDET RRR KQL N+ H I P+SV++ + ++++ Sbjct: 548 NVNGKAILYADVVTGSMRRAIDETERRRAKQLLFNEVHGITPRSVQKPVDDILEGAYRAP 607 Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 L A D +L+ + +K LK L +M A NL FE+AA++RDEI Sbjct: 608 ASAGGRGLRKVAEAAPVYDLAELA-NPRKASTVLKELETRMLKHAANLEFEQAAKLRDEI 666 Query: 791 KRLKSSPY 798 KRL+ + + Sbjct: 667 KRLRDATF 674 >gi|226944118|ref|YP_002799191.1| excinuclease ABC subunit B [Azotobacter vinelandii DJ] gi|226719045|gb|ACO78216.1| excinuclease ABC, B subunit [Azotobacter vinelandii DJ] Length = 669 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/661 (55%), Positives = 485/661 (73%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPDAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIARVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D I+V++VS IYG+G SY +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALMERPDAIIVATVSSIYGLGDPASYLKMVLHIDRGDRLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I++FP+ E A R+ +F +++E ++ F PLTG+ IR + Y Sbjct: 184 DLDFARATFRVRGDVIDVFPAESELEAIRIELFDDEVESLAAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK ELK RL L + G+L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEQIKAELKERLEHLRERGKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG PPPTL++Y+P+++L+ +DESHVT+PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRAPGLPPPTLYDYLPDNALMVIDESHVTVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG +E E G ++EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWERIAPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPELE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+IT S++ AIDET RRR KQ+ N+ H I P+ VK+ I ++++ ++ Sbjct: 543 NLNGKAILYADSITGSMRRAIDETERRRAKQIAFNETHGIVPRGVKKDIQDILEGAVVPG 602 Query: 741 AATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A A + S S + ++ L ++M+ A +L FE AAR+RDEI+ L Sbjct: 603 ARGRKRVARAAEESGQYAAELRSPSEIDKRIRQLEEKMYALARDLEFEAAARLRDEIQAL 662 Query: 794 K 794 + Sbjct: 663 R 663 >gi|145633293|ref|ZP_01789024.1| excinuclease ABC subunit B [Haemophilus influenzae 3655] gi|145634422|ref|ZP_01790132.1| excinuclease ABC subunit B [Haemophilus influenzae PittAA] gi|145638820|ref|ZP_01794428.1| excinuclease ABC subunit B [Haemophilus influenzae PittII] gi|229845025|ref|ZP_04465161.1| excinuclease ABC subunit B [Haemophilus influenzae 6P18H1] gi|144986139|gb|EDJ92729.1| excinuclease ABC subunit B [Haemophilus influenzae 3655] gi|145268402|gb|EDK08396.1| excinuclease ABC subunit B [Haemophilus influenzae PittAA] gi|145271792|gb|EDK11701.1| excinuclease ABC subunit B [Haemophilus influenzae PittII] gi|229811997|gb|EEP47690.1| excinuclease ABC subunit B [Haemophilus influenzae 6P18H1] gi|301169987|emb|CBW29591.1| excinulease of nucleotide excision repair, DNA damage recognition component [Haemophilus influenzae 10810] gi|309750803|gb|ADO80787.1| Excinuclease ABC, subunit B [Haemophilus influenzae R2866] Length = 679 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 488/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|53803510|ref|YP_114621.1| excinuclease ABC subunit B [Methylococcus capsulatus str. Bath] gi|81823612|sp|Q605S7|UVRB_METCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|53757271|gb|AAU91562.1| excinuclease ABC, B subunit [Methylococcus capsulatus str. Bath] Length = 664 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/660 (55%), Positives = 488/660 (73%), Gaps = 7/660 (1%) Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 +++ Y PSGDQP AI +L++G++ E Q LLGVTGSGKTFT+A VI +QRP +++A N Sbjct: 2 LRSGYAPSGDQPEAIRRLVEGLNDGELHQTLLGVTGSGKTFTIANVIAQVQRPTLILAHN 61 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DTYIEK+SS+NE I++MR SA Sbjct: 62 KTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTYIEKDSSLNEHIEQMRLSA 121 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 T++L+ER+D ++V++VS IYG+G SY +M++ L GD ++Q+ L+ L + QY R + Sbjct: 122 TKALIERHDTVIVATVSSIYGLGEPASYFEMVLHLVRGDMIDQRTLVRRLAELQYTRNEA 181 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 + RG++RV GD I+I+P+ E A RV +F ++IE +S F PLTG+ I + +Y Sbjct: 182 ELRRGSYRVRGDVIDIYPAESEKEALRVELFDDEIERLSLFDPLTGEVISRIARYTVYPK 241 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 +HYVTPR L A++ IK ELK RL L + +L+EAQRLEQR +D+E++ G C I Sbjct: 242 THYVTPREKLLEAVEEIKVELKDRLEHLRSQHKLVEAQRLEQRTLFDVEIILEVGYCSGI 301 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSR+L+GR PGEPPPTLF+Y+P+D+L+ +DESHVT+PQI MYRGD RK TL EYGF Sbjct: 302 ENYSRFLSGRAPGEPPPTLFDYLPDDALIVIDESHVTVPQIGAMYRGDRSRKETLVEYGF 361 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPS +DNRPL+FEE+ P I VSATPG +E G +VEQ++RPTGLVDP VE+R Sbjct: 362 RLPSALDNRPLKFEEFEARAPQRIYVSATPGPYERAHS-GAVVEQVVRPTGLVDPEVEVR 420 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 A TQV+D+ EI Q G R+L+T LTKRMAEDLTEYL E ++ VRY+HS+V T+ER+ Sbjct: 421 PASTQVDDLLSEIRFRVQGGERVLVTTLTKRMAEDLTEYLMEHDVAVRYLHSDVDTVERV 480 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAARN+ Sbjct: 481 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSAVSLIQTIGRAARNL 540 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 + K ILYAD +T+S+Q AIDET RRR KQ+ +N++H + P+ + + + ++++ + +A Sbjct: 541 HGKAILYADKVTQSMQQAIDETERRRAKQIAYNERHGLTPRGITKSVTDILEVSIPGGSA 600 Query: 743 -----TTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ ++K A L K L ++M+ A +L FEEAAR+RDEI+R++ S Sbjct: 601 GSRKQAARVAEPGAGYKVAKPSEAARLIKQLEEKMYAHARDLEFEEAARLRDEIQRIRES 660 >gi|27366360|ref|NP_761888.1| excinuclease ABC subunit B [Vibrio vulnificus CMCP6] gi|32130295|sp|Q8D891|UVRB_VIBVU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56749771|sp|Q7MM80|UVRB_VIBVY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|27362561|gb|AAO11415.1| excinuclease ABC, B subunit [Vibrio vulnificus CMCP6] Length = 676 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/670 (55%), Positives = 491/670 (73%), Gaps = 19/670 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 + + +DY PSGDQP AI QL +G+ + Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 4 LYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 64 APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G E+Y QM++ ++ GD ++Q+++L L + QY R Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 DI RG FRV G+ I++FP+ + A R+ MF ++I+ IS F PLTG K R++ Sbjct: 184 NDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK+EL+ R L +LLE QR+ QR +D+EM+ G Sbjct: 244 IYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPV 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T Sbjct: 424 LEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734 ARN++ K ILYAD+ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ Sbjct: 544 ARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDI 603 Query: 735 ----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + L A ++S + L+ ++ + + L QM+ A +L FE AA Sbjct: 604 TKSRKQKVSKTVPLSKVAEPSLSYNV----LTPQQLEKEITKLEAQMYKHAQDLEFELAA 659 Query: 785 RIRDEIKRLK 794 + RDEI++L+ Sbjct: 660 QKRDEIEKLR 669 >gi|330959091|gb|EGH59351.1| excinuclease ABC subunit B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 671 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|73540754|ref|YP_295274.1| excinuclease ABC subunit B [Ralstonia eutropha JMP134] gi|90111049|sp|Q473K3|UVRB_RALEJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|72118167|gb|AAZ60430.1| Excinuclease ABC subunit B [Ralstonia eutropha JMP134] Length = 695 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/672 (56%), Positives = 487/672 (72%), Gaps = 12/672 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + K +TF FQ+ + P+GDQP AI QL++GI Q LLGVTGSGKT+TMA V Sbjct: 12 DEDKIVTFPGSPFQLYQPFPPAGDQPEAIRQLVEGIEDGLSFQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARMGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SLLER D I+V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPNEYHQMILTLRTGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A R+ MF +++E + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL KE RL+E QRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEDIKAELRDRLEFFHKENRLVEVQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLSELGFCKGIENYSRHLSGAKPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL EYGFRLPS +DNRPL+FEE+ + VSATP +E E G +VEQ+ Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFEEFERKMRQVMFVSATPAQFEKEHA-GQVVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EINL + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 431 VRPTGLVDPIIIVRPATTQVDDLLSEINLRVEAGERVLVTTLTKRMAEQLTEFLSENGVK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILYAD IT S++ AIDET RRR KQ+ N+ + I P+ V ++ Sbjct: 551 RSLIQTIGRAARNVNGTAILYADRITDSMRKAIDETERRRAKQMAFNEANGITPRGVIKR 610 Query: 729 IMEVIDPILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 I ++ID + DA + A Q +S+K+ +K L K M A NL FE+A Sbjct: 611 IKDIIDGVY--DAGEVKAELLAAQERARYEDMSEKQVSKEIKRLEKLMMDHAKNLEFEKA 668 Query: 784 ARIRDEIKRLKS 795 A++RD++ +LK+ Sbjct: 669 AQVRDQLAKLKA 680 >gi|119897902|ref|YP_933115.1| excinuclease ABC subunit B [Azoarcus sp. BH72] gi|119670315|emb|CAL94228.1| excinuclease ABC subunit B [Azoarcus sp. BH72] Length = 691 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/687 (54%), Positives = 502/687 (73%), Gaps = 14/687 (2%) Query: 122 IWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177 + +P S S ++ +K +TF F++ + P+GDQP AI L +G+ Q LLGVT Sbjct: 1 MQSPADSGS-DSTAKVLTFEGSPFRLHQPFPPAGDQPEAIRLLCEGVEDGLMYQTLLGVT 59 Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 GSGKT+TMA VI M RPA+V+APNK LAAQLY+EF+ F P NAVEYFVSYYDYYQPEAY Sbjct: 60 GSGKTYTMANVIARMGRPALVLAPNKTLAAQLYAEFREFLPENAVEYFVSYYDYYQPEAY 119 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 VP+ D +IEK+SS+NE I++MR SAT+SL+ER D ++V++VSCIYGIG Y MI+ L Sbjct: 120 VPQRDLFIEKDSSVNEHIEQMRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHL 179 Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 + G+ V ++L++ LV QY R D+ RGTFRV GD I++FPS ++A R+ MF ++I Sbjct: 180 REGERVSHRDLIARLVAMQYTRADLDFRRGTFRVRGDVIDVFPSENAELAVRIEMFDDEI 239 Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417 E ++ F PLTG + + +Y +SHYVTPR T+ A++ IKEELK R+ ++EG+L+ Sbjct: 240 EHLTLFDPLTGHLKQKLVRFTVYPSSHYVTPRATVLKAIEAIKEELKDRIAFFQREGKLV 299 Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477 EAQRLEQR +DLEML G C+ IENYSR+L+GR PGEPPPTL +Y+P D+L+F+DESH Sbjct: 300 EAQRLEQRTRFDLEMLNEMGFCKGIENYSRHLSGRGPGEPPPTLIDYLPADALMFIDESH 359 Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 V I Q+ GMY+GD RK L YGFRLPS +DNRPL+FEE+ L P T+ VSATP ++E Sbjct: 360 VAIGQVGGMYKGDRSRKENLVGYGFRLPSALDNRPLKFEEFERLMPQTVFVSATPAAYE- 418 Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN--LAAQQGLRILLTVLTKRMA 595 Q QG +VEQ++RPTGL+DP VEIR A TQV+D+ +I +A Q+ R+L+TVLTKRMA Sbjct: 419 AQHQGQVVEQVVRPTGLIDPVVEIRPATTQVDDLLAQIKTRIAVQE--RVLVTVLTKRMA 476 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDLT+YL + I+VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE LVA Sbjct: 477 EDLTDYLADNGIKVRYLHSDIDTVERVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVA 536 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDADKEGFLRS+ SLIQTIGRAAR+++ ILYAD IT S++ AI ET RRR KQ+ N Sbjct: 537 ILDADKEGFLRSERSLIQTIGRAARHIHGTAILYADQITDSMRAAIGETERRRTKQIAFN 596 Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQM 771 + + I P++V ++I ++ID + D A+ + + A ++ +K+ +K L K+M Sbjct: 597 EANGIVPRTVSKRIKDIIDGVYNADGASRDSARVGEARADYAAMDEKQLARAIKKLEKEM 656 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPY 798 A NL FE+AA RDE+ +L+ + Sbjct: 657 QEHARNLEFEKAAAARDELFKLRERAF 683 >gi|149377056|ref|ZP_01894807.1| excinuclease ABC subunit B [Marinobacter algicola DG893] gi|149358714|gb|EDM47185.1| excinuclease ABC subunit B [Marinobacter algicola DG893] Length = 687 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/674 (55%), Positives = 484/674 (71%), Gaps = 14/674 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI L+ GIHS Q LLGVTGSGKTFT+A VI+ +QRP I+MA Sbjct: 15 FKVDSPFQPAGDQPKAIDGLVDGIHSGLAHQTLLGVTGSGKTFTIANVIQQVQRPTIIMA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 75 HNKTLAAQLYGEFREFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+ +L L + QY R Sbjct: 135 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRHILRRLAELQYTRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R +RV GD I++FP+ E A R+ +F +++E +S F PLTG+ +R V + IY Sbjct: 195 DVEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A++ IK EL RL +L RL+EAQRLE+R YD+EM+ G C Sbjct: 255 PKSHYVTPRQKVLDAVERIKVELDERLKQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P +++L VDESHVTIPQI MY+GD RK TL EY Sbjct: 315 GIENYSRYLSGRQPGEAPPTLFDYLPANAMLVVDESHVTIPQIGAMYKGDRSRKETLVEY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P + VSATPG++E E G +VEQ++RPTGL+DP +E Sbjct: 375 GFRLPSALDNRPMRFDEWERIAPQMLFVSATPGNYEAEHS-GQVVEQVVRPTGLLDPEIE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI L RIL+T LTKRMAEDLT++L E +IRVRY+HS++ T+E Sbjct: 434 VRPASTQVDDLLSEIRLRTDVNERILVTTLTKRMAEDLTDFLMEHDIRVRYLHSDIDTVE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 494 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N++ K ILY D IT S+Q AIDET RRR KQ HN++H I PQ + +KI ++++ Sbjct: 554 NLHGKAILYGDRITGSMQRAIDETGRRRAKQAAHNEEHGITPQGLNKKIADIMEGAGGGG 613 Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 E AA A+ + S ++ + L M+ AA +L+FE AAR+R Sbjct: 614 GRGRRKAERPGEKAAEEAEKYRAKAGNRSPEEVLKEITRLEDDMYKAAADLDFETAARLR 673 Query: 788 DEIKRLKSSPYFQG 801 D+I LK + G Sbjct: 674 DDISELKEAALRTG 687 >gi|332993965|gb|AEF04020.1| excinuclease ABC subunit B [Alteromonas sp. SN2] Length = 671 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/662 (55%), Positives = 491/662 (74%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI L+ G+ S Q LLGVTGSGKTFTMA VI +QRP +++A Sbjct: 5 FELHSSYKPAGDQPAAIETLVDGLESGLAAQTLLGVTGSGKTFTMANVISEVQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 65 HNKTLAAQLYGEMKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G ESY +M++ L+ GD+++Q+++L L + QYKR Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD I+IFP+ E A RV +F ++I++IS F PLTG ++V ++ Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVVRATVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+++IK ELK R +L + +L+E QR+ QR +D+EM+ G C Sbjct: 245 PKTHYVTPREKILDAIEHIKGELKSRKAQLLEINKLIEEQRISQRTQFDIEMMMELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ QI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + P T+ VSATPG +EL++ G IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTVYVSATPGEYELKKTHGDIVEQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI+ R+L+T LTKRMAEDL+EYL E ++VRY+HS++ T+E Sbjct: 425 VRPVATQVDDVLSEIHKRVALDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+GKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 485 RIEIIRDLRIGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N + ILY D ITKS++ A+DET RRREKQ+EHNK +NI P + + I +++D L E Sbjct: 545 HINGRAILYGDKITKSMKKAMDETERRREKQIEHNKANNITPMRLNKPITDIMD--LGEG 602 Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A + + +++ KK+ KA + L KQM A L FE+AA +RD+++ Sbjct: 603 AHPASGKVRLRKVEEKKKQKKAASATELMDQIAELEKQMFEYARELEFEKAASLRDDVEA 662 Query: 793 LK 794 L+ Sbjct: 663 LR 664 >gi|184159102|ref|YP_001847441.1| excinuclease ABC subunit B [Acinetobacter baumannii ACICU] gi|239501080|ref|ZP_04660390.1| excinuclease ABC subunit B [Acinetobacter baumannii AB900] gi|332875931|ref|ZP_08443717.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6014059] gi|183210696|gb|ACC58094.1| Helicase subunit of the DNA excision repair complex [Acinetobacter baumannii ACICU] gi|193078002|gb|ABO12922.2| excinuclease ABC subunit B [Acinetobacter baumannii ATCC 17978] gi|322509016|gb|ADX04470.1| uvrB [Acinetobacter baumannii 1656-2] gi|323518998|gb|ADX93379.1| excinuclease ABC subunit B [Acinetobacter baumannii TCDC-AB0715] gi|332735797|gb|EGJ66838.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6014059] Length = 673 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/666 (56%), Positives = 485/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+PED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732 NV K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S V++ + E+ Sbjct: 546 NVKGKAILYADTITDSMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLS 605 Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ID +LE A +S D + + K H+ L K+M A+ +L FE+AARIRDE Sbjct: 606 DDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663 Query: 790 IKRLKS 795 I RLK+ Sbjct: 664 IVRLKA 669 >gi|332091058|gb|EGI96148.1| excinuclease ABC, B subunit [Shigella dysenteriae 155-74] Length = 673 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VWPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|169795110|ref|YP_001712903.1| excinuclease ABC subunit B [Acinetobacter baumannii AYE] gi|213158228|ref|YP_002320279.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB0057] gi|215482658|ref|YP_002324854.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB307-0294] gi|260556598|ref|ZP_05828816.1| excinuclease ABC, B subunit [Acinetobacter baumannii ATCC 19606] gi|301345200|ref|ZP_07225941.1| excinuclease ABC subunit B [Acinetobacter baumannii AB056] gi|301510962|ref|ZP_07236199.1| excinuclease ABC subunit B [Acinetobacter baumannii AB058] gi|301594561|ref|ZP_07239569.1| excinuclease ABC subunit B [Acinetobacter baumannii AB059] gi|332854010|ref|ZP_08435126.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013150] gi|332869710|ref|ZP_08438898.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013113] gi|169148037|emb|CAM85900.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Acinetobacter baumannii AYE] gi|213057388|gb|ACJ42290.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB0057] gi|213988750|gb|ACJ59049.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB307-0294] gi|260409857|gb|EEX03157.1| excinuclease ABC, B subunit [Acinetobacter baumannii ATCC 19606] gi|332728292|gb|EGJ59674.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013150] gi|332732612|gb|EGJ63845.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013113] Length = 673 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/666 (56%), Positives = 485/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+PED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732 NV K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S V++ + E+ Sbjct: 546 NVKGKAILYADTITDSMRKAIDETERRRTKQIEFNEQHGITPRSAVRQAVKEIDTGEVLS 605 Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ID +LE A +S D + + K H+ L K+M A+ +L FE+AARIRDE Sbjct: 606 DDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663 Query: 790 IKRLKS 795 I RLK+ Sbjct: 664 IVRLKA 669 >gi|56460889|ref|YP_156170.1| excinuclease ABC subunit B [Idiomarina loihiensis L2TR] gi|81362853|sp|Q5QXB8|UVRB_IDILO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56179899|gb|AAV82621.1| Helicase subunit of the DNA excision repair complex, UvrB [Idiomarina loihiensis L2TR] Length = 677 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/668 (55%), Positives = 490/668 (73%), Gaps = 16/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI LL + + Q+LLGVTGSGKTFTMA VIE QRP +++A Sbjct: 5 FELVSKYKPAGDQPKAIESLLDNLDAGLAHQVLLGVTGSGKTFTMANVIERSQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K +FP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 65 HNKTLAAQLYGEMKEYFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G ESY +M++ L+ GD ++Q+++L L + QYKR Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPESYMKMMLHLRRGDIIDQRDVLRRLAQLQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D RGT+RV GD I+IFP+ E++A R+ +F ++++ IS F PLTGQ ++V I Sbjct: 185 DAAFERGTYRVRGDVIDIFPAESEEIAVRLELFDSEVDRISFFEPLTGQITEKDVARATI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR L A++ IK+ELK R L K+ +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREVLVKAIEKIKDELKDRRDILLKQNKLIEEQRINQRTQFDIEMMLELGYC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGEPPPTL +Y+P+++LL +DESHVT+ QI MY+GD RK L E Sbjct: 305 SGIENYSRYLSGRAPGEPPPTLMDYLPDNALLIIDESHVTVSQIGAMYKGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ + P T+ VSATPG +ELE+ +VEQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLKFDEFEAIAPQTLYVSATPGKYELERSGNEVVEQVVRPTGLIDPQI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI L + G R+L T LTK+M+EDL +YL E I+VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLMSEIRLRTEVGERVLATTLTKKMSEDLADYLDEHGIKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 485 ERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN + ILYAD IT S+Q A+DET RRREKQ+ +NK+H I PQ + + I +V+D L + Sbjct: 545 RNVNGRAILYADRITGSMQRAMDETDRRREKQIAYNKEHGITPQGLNKDITDVMD--LGQ 602 Query: 740 DAATTNISIDAQQLS----------LSKKKGKAHLKSL---RKQMHLAADNLNFEEAARI 786 +A S + L+ + K KA +K + K+M+ AA NL FE+A ++ Sbjct: 603 GSAKARKSKAEKALAEVASGYDARTVVVKDAKAVMKEIDAKEKEMYKAAQNLEFEQAGKL 662 Query: 787 RDEIKRLK 794 RDE+ L+ Sbjct: 663 RDEVAELR 670 >gi|66045214|ref|YP_235055.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae B728a] gi|75502487|sp|Q4ZV05|UVRB_PSEU2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|63255921|gb|AAY37017.1| Excinuclease ABC, B subunit [Pseudomonas syringae pv. syringae B728a] gi|330941972|gb|EGH44669.1| excinuclease ABC subunit B [Pseudomonas syringae pv. pisi str. 1704B] gi|330974324|gb|EGH74390.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 671 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/665 (56%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|24374050|ref|NP_718093.1| excinuclease ABC subunit B [Shewanella oneidensis MR-1] gi|24348524|gb|AAN55537.1|AE015692_7 excinuclease ABC, B subunit [Shewanella oneidensis MR-1] Length = 673 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/667 (55%), Positives = 486/667 (72%), Gaps = 14/667 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD++ Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGTFRV G+ I+IFP+ + A RV +F ++IE +SEF PLTGQ ++ + Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A + IK+EL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP S+ELE+ G IVEQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ E+ R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ AI ET RRREKQ +N +H I P+ V ++I +V+D + Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMD---V 600 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787 +D L +++ K K + + L KQMH A NL FE+AA +R Sbjct: 601 DDGREAEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR 660 Query: 788 DEIKRLK 794 DE+KRL+ Sbjct: 661 DEVKRLR 667 >gi|213970442|ref|ZP_03398570.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato T1] gi|301385866|ref|ZP_07234284.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato Max13] gi|302063920|ref|ZP_07255461.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato K40] gi|302130087|ref|ZP_07256077.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924760|gb|EEB58327.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato T1] gi|330875745|gb|EGH09894.1| excinuclease ABC subunit B [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 671 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|146307759|ref|YP_001188224.1| excinuclease ABC subunit B [Pseudomonas mendocina ymp] gi|145575960|gb|ABP85492.1| Excinuclease ABC subunit B [Pseudomonas mendocina ymp] Length = 671 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/664 (55%), Positives = 488/664 (73%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFKPAGDQPEAIRQMIEGLEAGLSHQTLLGVTGSGKTFSVANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D IVV +VS IYG+GS E Y +M++ L GD ++Q+ LL L + QY R Sbjct: 124 SATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ + A RV +F +++E IS F PLTG+ I+ + Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK EL+ RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLEAVEQIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P+D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW P TI VSATPG +E E G ++EQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPAVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ARTQV+D+ EI L G R+L+T LTKRMAEDLT+YL + +++VRY+HS++ T+E Sbjct: 423 VRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD +T S+Q AI ET RRR KQ+ N+ + I P+ V++ + ++++ ++ Sbjct: 543 NLNGRAILYADNMTGSMQRAIGETERRRAKQIAFNEANGIVPKGVQKDVKDILEGAVVP- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRDEI 790 A +N + + + ++ L+S L ++M+ A +L FE AA++RDEI Sbjct: 602 GARSNKRKGMAKAAEESARYESELRSPSEITKRIRQLEEKMYALARDLEFEAAAQLRDEI 661 Query: 791 KRLK 794 ++L+ Sbjct: 662 QKLR 665 >gi|229846849|ref|ZP_04466956.1| excinuclease ABC subunit B [Haemophilus influenzae 7P49H1] gi|229810338|gb|EEP46057.1| excinuclease ABC subunit B [Haemophilus influenzae 7P49H1] gi|309972984|gb|ADO96185.1| Excinuclease ABC, subunit B [Haemophilus influenzae R2846] Length = 679 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D + Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ ++ K+ + +K L +QM+ A +L FE+AA IR+ Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRN 666 Query: 789 EIKRLKSSPYF 799 ++ +L+ F Sbjct: 667 QLHQLREQFVF 677 >gi|262376040|ref|ZP_06069271.1| excinuclease ABC, B subunit [Acinetobacter lwoffii SH145] gi|262309134|gb|EEY90266.1| excinuclease ABC, B subunit [Acinetobacter lwoffii SH145] Length = 673 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/667 (55%), Positives = 489/667 (73%), Gaps = 10/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T Y P+GDQP AI +L+KGI QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FELVTSYQPAGDQPQAIEKLVKGIEQGFHDQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D I+V+SVS IYG+G +Y M++ + GD + + +++ LV+ QY R Sbjct: 127 SATRSLLERRDTIIVASVSAIYGLGDPNAYMSMLLHVVEGDRIGRDDIIRRLVEMQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQDAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L+ A++ I++ELK RL+ + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLSRAIETIRDELKERLVFFRENDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR+ GE PPTLF+YIP+D+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRSAGEAPPTLFDYIPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTT+ VSATP +ELE+ Q IVEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTVYVSATPARYELEKSQQ-IVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EINL R+L+T LTKRMAEDLT YL E I+V Y+HS++ T+E Sbjct: 426 IRPVLTQVDDVLSEINLRKDINERVLVTTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 N+ K ILYAD IT S+Q AI+ET RRR KQ++ N++H I P+S ++++ ID +L Sbjct: 546 NLKGKAILYADRITDSMQKAIEETDRRRAKQIQFNEEHGITPRSAVRQVIKEIDTGEVLD 605 Query: 739 EDAATTNISIDAQQLSLSKKKGKA-------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D+ +S A+ +S ++ A H+ L K+M A+ L FE+AAR+RDEI Sbjct: 606 DDSIELKVSDQARAISADERHIMADPKMFAKHINKLEKEMLKASKELQFEQAARMRDEIV 665 Query: 792 RLKSSPY 798 RLK+ + Sbjct: 666 RLKAQMF 672 >gi|294651009|ref|ZP_06728349.1| excinuclease ABC subunit B [Acinetobacter haemolyticus ATCC 19194] gi|292823110|gb|EFF81973.1| excinuclease ABC subunit B [Acinetobacter haemolyticus ATCC 19194] Length = 680 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 482/664 (72%), Gaps = 10/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T+Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 13 FELVTNYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAKTQRPTIVMA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 73 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + +++ LV+ QY R Sbjct: 133 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A RV +F ++++ I F PLTG+ +R V + IY Sbjct: 193 ELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+ELK +L + +LLEAQR+EQR YDLEM++ G Sbjct: 253 PKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYTN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+PED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 313 GIENYSRHLSGRTAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTT+ VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 373 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPALYELEKSEQ-VVEQVVRPTGLIDPEIE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ Q R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 432 VRPVLTQVDDVLSEINIRRQLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 492 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 NV K ILYAD IT S++ AIDET RRR KQ+E N+ H I P+S + ++ ID +L Sbjct: 552 NVKGKAILYADRITDSMRKAIDETDRRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVLT 611 Query: 739 EDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D N IS D Q L K H+ L K+M A+ L FE+AAR+RDEI Sbjct: 612 DDQIDENALQQAQSISADEQHLLSDPKLFAKHIGKLEKEMLKASKELQFEQAARLRDEIV 671 Query: 792 RLKS 795 RLK+ Sbjct: 672 RLKA 675 >gi|152997223|ref|YP_001342058.1| excinuclease ABC subunit B [Marinomonas sp. MWYL1] gi|150838147|gb|ABR72123.1| excinuclease ABC, B subunit [Marinomonas sp. MWYL1] Length = 675 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 488/663 (73%), Gaps = 10/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AI +L++G+ + Q LLGVTGSGKT+T+A VI ++RP IVMA Sbjct: 5 FQVVSSYSPAGDQPKAIEKLVRGVEAGLAHQTLLGVTGSGKTYTIANVISQVKRPTIVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDVLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD IE+FP+ ED A R+ +F +++E +S PLT + IR V + IY Sbjct: 185 DLVLERGNFRVRGDVIEVFPADSEDTAIRIELFDDEVETLSMIDPLTNKTIRKVPRVTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ T+ A++ IK EL RL +L+ +L+E QRL+QR YDLEM++ G C Sbjct: 245 PKTHYVTPKETVQAAIERIKVELDQRLEQLKSMNKLVEMQRLDQRTRYDLEMMQELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P ++LL +DESHVT+ QI MY+GD RK L EY Sbjct: 305 GIENYSRYLSGREEGSPPPTLFDYLPANALLVIDESHVTVSQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW ++P TI VSATPG +E E+ Q +VEQI+RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEWEQIKPQTIFVSATPGKYE-EEHQDWVVEQIVRPTGLIDPILE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EINL G R+L+T LTKRMAEDL++YL + +RVRY+HS++ T+E Sbjct: 424 VRPVATQVDDLLSEINLRTPIGERVLVTTLTKRMAEDLSDYLGDHGVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSEKSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD IT S++ AI ET RRREKQ +N++H I P + + + ++++ Sbjct: 544 NVNGKAILYADRITGSMERAISETDRRREKQKAYNEEHGITPVGITKSVEDIMEGAYNPG 603 Query: 741 AA-----TTNISIDAQQLSLSKKKGKAHLKS----LRKQMHLAADNLNFEEAARIRDEIK 791 A T ++ A+ + + A ++ L+K+M LA++ L FE AA RD+I+ Sbjct: 604 AGKRSNKTKKVAETAKDYQVESMEDVAQVRKAMIQLQKEMMLASEELKFELAAGYRDQIR 663 Query: 792 RLK 794 +L+ Sbjct: 664 QLQ 666 >gi|189351000|ref|YP_001946628.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616] gi|189335022|dbj|BAG44092.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616] Length = 704 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/698 (54%), Positives = 498/698 (71%), Gaps = 20/698 (2%) Query: 125 PHRSWSINNH----------SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170 PHR S++ H SK +TF FQ+ Y P+GDQP AI L++G+ Sbjct: 3 PHRLHSMSEHHAEIGDTLDESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAF 62 Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 Q LLGVTGSGKTFTMA I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYD Sbjct: 63 QTLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYD 122 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 YYQPEAYVP+ D +IEK+SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y Sbjct: 123 YYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEY 182 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 QMI+ L+ GD + Q+++++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV Sbjct: 183 HQMILTLRTGDKLGQRDVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRV 242 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F +++E + F PLTG+ + + +Y +SHYVTPR T+ A++ IKEEL+ RL Sbjct: 243 ELFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFF 302 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +EG+L+EAQRLEQR +DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L Sbjct: 303 HREGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAL 362 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530 + +DESHV I Q++GMY GD RK L YGFRLPS +DNRPL+F E+ + VSA Sbjct: 363 MLLDESHVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSA 422 Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590 TP +E ++ G I EQ++RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVL Sbjct: 423 TPADYE-QRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVL 481 Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRMAE LTE+L + I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE Sbjct: 482 TKRMAEQLTEFLADHGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPE 541 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LVAILDADKEGFLR++ SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR K Sbjct: 542 VSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAK 601 Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKS 766 Q+ +N+K I P+ V ++I ++ID + D A + +AQQ + +S+K+ +K Sbjct: 602 QIAYNEKMGITPRGVVKRIKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKR 660 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804 L KQM A NL FE+AA RD++ L+ + + D Sbjct: 661 LEKQMADYAKNLEFEKAAATRDQLALLRERVFGANVGD 698 >gi|161524243|ref|YP_001579255.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616] gi|160341672|gb|ABX14758.1| excinuclease ABC, B subunit [Burkholderia multivorans ATCC 17616] Length = 732 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/698 (54%), Positives = 498/698 (71%), Gaps = 20/698 (2%) Query: 125 PHRSWSINNH----------SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170 PHR S++ H SK +TF FQ+ Y P+GDQP AI L++G+ Sbjct: 31 PHRLHSMSEHHAEIGDTLDESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAF 90 Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 Q LLGVTGSGKTFTMA I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYD Sbjct: 91 QTLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYD 150 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 YYQPEAYVP+ D +IEK+SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y Sbjct: 151 YYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEY 210 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 QMI+ L+ GD + Q+++++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV Sbjct: 211 HQMILTLRTGDKLGQRDVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRV 270 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F +++E + F PLTG+ + + +Y +SHYVTPR T+ A++ IKEEL+ RL Sbjct: 271 ELFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFF 330 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +EG+L+EAQRLEQR +DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L Sbjct: 331 HREGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAL 390 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530 + +DESHV I Q++GMY GD RK L YGFRLPS +DNRPL+F E+ + VSA Sbjct: 391 MLLDESHVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSA 450 Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590 TP +E ++ G I EQ++RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVL Sbjct: 451 TPADYE-QRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVL 509 Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRMAE LTE+L + I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE Sbjct: 510 TKRMAEQLTEFLADHGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPE 569 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LVAILDADKEGFLR++ SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR K Sbjct: 570 VSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAK 629 Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKS 766 Q+ +N+K I P+ V ++I ++ID + D A + +AQQ + +S+K+ +K Sbjct: 630 QIAYNEKMGITPRGVVKRIKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKR 688 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804 L KQM A NL FE+AA RD++ L+ + + D Sbjct: 689 LEKQMADYAKNLEFEKAAATRDQLALLRERVFGANVGD 726 >gi|33152480|ref|NP_873833.1| excinuclease ABC subunit B [Haemophilus ducreyi 35000HP] gi|71153393|sp|Q7VLL3|UVRB_HAEDU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33148703|gb|AAP96222.1| excinuclease ABC subunit B [Haemophilus ducreyi 35000HP] Length = 675 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/662 (56%), Positives = 482/662 (72%), Gaps = 8/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AI +L +G+ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 8 FILNSPFAPSGDQPSAIKKLTEGLQDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V +Y QM++ L++G + Q+++L+ L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVNAYMQMMLHLQVGAIINQRDILARLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A R+ +F ++I+ +S F PLTG + IY Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRIELFDDEIDNLSLFDPLTGHSFGKIPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + TA+ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILTAIDQIKNELTGRQDYFIKEHKLLEEQRITQRTQFDIEMINELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRQEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I++Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLKFEEFERLSPQTIYVSATPGNYELEKSNGDIIDQVVRPTGLLDPIIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +QV+DV EI R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 428 VRPVASQVDDVLSEIQQRVALDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS++SLIQTIGRAAR Sbjct: 488 RVEIIHDLRIGMFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSESSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N+N K ILYAD IT S+Q AI ET RRREKQ ++N++HNI PQ++ +K+ E++D Sbjct: 548 NLNGKAILYADRITHSMQKAITETERRREKQQKYNQEHNIIPQALNKKVRELLDIGQTDK 607 Query: 739 EDAATTNISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + + I Q S + K+ LK L +QM A +L FE+AA +RD+I + Sbjct: 608 QKKGKQAVKIAEQSASYTPNAPKSRQALEKELKQLTQQMQKLAKDLEFEKAAAVRDKIGQ 667 Query: 793 LK 794 LK Sbjct: 668 LK 669 >gi|24112147|ref|NP_706657.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 301] gi|30062264|ref|NP_836435.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 2457T] gi|110804780|ref|YP_688300.1| excinuclease ABC subunit B [Shigella flexneri 5 str. 8401] gi|81839440|sp|Q83S42|UVRB_SHIFL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|122957558|sp|Q0T6I1|UVRB_SHIF8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|24050984|gb|AAN42364.1| excision nuclease subunit B [Shigella flexneri 2a str. 301] gi|30040509|gb|AAP16241.1| excision nuclease subunit B [Shigella flexneri 2a str. 2457T] gi|110614328|gb|ABF02995.1| excision nuclease subunit B [Shigella flexneri 5 str. 8401] gi|281600105|gb|ADA73089.1| UvrABC system protein B [Shigella flexneri 2002017] gi|313650323|gb|EFS14735.1| excinuclease ABC, B subunit [Shigella flexneri 2a str. 2457T] gi|332760521|gb|EGJ90810.1| excinuclease ABC, B subunit [Shigella flexneri 2747-71] gi|332763269|gb|EGJ93511.1| excinuclease ABC, B subunit [Shigella flexneri K-671] gi|332767941|gb|EGJ98127.1| excinuclease ABC, B subunit [Shigella flexneri 2930-71] gi|333021199|gb|EGK40455.1| excinuclease ABC, B subunit [Shigella flexneri K-304] Length = 673 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM++ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D T S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + + K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|315126990|ref|YP_004068993.1| excinuclease ABC subunit B [Pseudoalteromonas sp. SM9913] gi|315015504|gb|ADT68842.1| excinuclease ABC subunit B [Pseudoalteromonas sp. SM9913] Length = 664 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/658 (55%), Positives = 488/658 (74%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P+GDQP AIAQL +G+ + Q LLG TG+GKTFTMA +I + RP I+MA Sbjct: 5 FQLESKFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYV +DT+IEK++SINE I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ LK+G+ V+Q+++L L + QY R Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV G+ ++IFP+ + A RV MF +++E +S F PLTG +++ IY Sbjct: 185 DIDFSRGTYRVRGEVVDIFPAESDTYAVRVEMFDDEVERLSIFDPLTGAVEKHIVRATIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK ELK R +L +L+E QR+ QR YD+EM+ G C Sbjct: 245 PKTHYVTPREKILEAIEKIKVELKERRAQLLSANKLVEEQRIAQRTQYDIEMMTELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI MY+GD RK L EY Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS MDNRPLRFEE+ + P TI VSATPG +ELE+ G + EQ+IRPTGL+DP +E Sbjct: 365 GFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFELERSNGEVAEQVIRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + ++G R+L+T LTKRMAEDLT+YL E N++VRY+HS++ T+E Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMAEDLTDYLSEHNVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +++ + ILY D ITKS+ AIDET RRR+ Q +N KH I P+++ +KI++V+D + ED Sbjct: 545 HLDGRAILYGDRITKSMAKAIDETQRRRDIQHAYNVKHGIEPKALIKKILDVMD--VGED 602 Query: 741 AATTN----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ + I +++++ LS K+ +K L +MH A +L FE+AA +RDEI L+ Sbjct: 603 ASPQDNLQLIRKESKKI-LSAKEIATQIKQLETKMHAYASDLEFEKAASVRDEIHELQ 659 >gi|221198516|ref|ZP_03571562.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2M] gi|221208534|ref|ZP_03581535.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2] gi|221171525|gb|EEE03971.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2] gi|221182448|gb|EEE14849.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2M] Length = 732 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/698 (54%), Positives = 498/698 (71%), Gaps = 20/698 (2%) Query: 125 PHRSWSINNH----------SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170 PHR S++ H SK +TF FQ+ Y P+GDQP AI L++G+ Sbjct: 31 PHRLHSMSEHHAEIGDTLDESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAF 90 Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 Q LLGVTGSGKTFTMA I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYD Sbjct: 91 QTLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYD 150 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 YYQPEAYVP+ D +IEK+SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y Sbjct: 151 YYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEY 210 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 QMI+ L+ GD + Q+++++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV Sbjct: 211 HQMILTLRTGDKLGQRDVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRV 270 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F +++E + F PLTG+ + + +Y +SHYVTPR T+ A++ IKEEL+ RL Sbjct: 271 ELFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFF 330 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +EG+L+EAQRLEQR +DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L Sbjct: 331 HREGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAL 390 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530 + +DESHV I Q++GMY GD RK L YGFRLPS +DNRPL+F E+ + VSA Sbjct: 391 MLLDESHVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSA 450 Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590 TP +E ++ G I EQ++RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVL Sbjct: 451 TPADYE-QRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVL 509 Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRMAE LTE+L + I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE Sbjct: 510 TKRMAEQLTEFLADHGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPE 569 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LVAILDADKEGFLR++ SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR K Sbjct: 570 VSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAK 629 Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKS 766 Q+ +N+K I P+ V ++I ++ID + D A + +AQQ + +S+K+ +K Sbjct: 630 QIAYNEKMGITPRGVVKRIKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKR 688 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804 L KQM A NL FE+AA RD++ L+ + + D Sbjct: 689 LEKQMADYAKNLEFEKAAATRDQLALLRERVFGANVRD 726 >gi|28869367|ref|NP_791986.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|81840219|sp|Q884C9|UVRB_PSESM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|28852608|gb|AAO55681.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|331018632|gb|EGH98688.1| excinuclease ABC subunit B [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 671 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 487/669 (72%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + + +++ + Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIM------E 596 Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785 AT S ++ ++K ++ ++ L ++M+ A +L FE AA+ Sbjct: 597 GATVPGSRSKKRKGMAKAAEESARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQ 656 Query: 786 IRDEIKRLK 794 +RDEI +L+ Sbjct: 657 MRDEIGKLR 665 >gi|330899139|gb|EGH30558.1| excinuclease ABC subunit B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 673 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|319943708|ref|ZP_08017989.1| excision endonuclease subunit UvrB [Lautropia mirabilis ATCC 51599] gi|319742941|gb|EFV95347.1| excision endonuclease subunit UvrB [Lautropia mirabilis ATCC 51599] Length = 729 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/688 (55%), Positives = 485/688 (70%), Gaps = 32/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + P+GDQP AI L++G+ Q LLGVTGSGKT+TMA VI + RPA+V+A Sbjct: 43 YRLHQPFPPAGDQPGAIDALVEGVEDGLSFQTLLGVTGSGKTYTMANVIARLGRPALVLA 102 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E ++FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I+++R Sbjct: 103 PNKTLAAQLYAEMRDFFPENAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQLRL 162 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V SVSCIYGIG+ Y +M + L+ GD + Q++LL LV QYKR Sbjct: 163 SATKSLLERRDTVIVGSVSCIYGIGNPADYFEMRLVLRKGDRLAQRDLLKQLVAMQYKRN 222 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+I++FPS ++A RV MF +++E + F PLTG+ + + +Y Sbjct: 223 DTDFARGTFRVRGDTIDVFPSENAELALRVEMFDDEVEMLQLFDPLTGRIRQQIPRFVVY 282 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A SHYVTPR T+ A+ IK ELK RL EG+L+EAQRLEQR +DLEML+ G C+ Sbjct: 283 AASHYVTPRATIVRALDTIKAELKDRLAFFHAEGKLVEAQRLEQRTLFDLEMLQELGFCK 342 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD RK TL +Y Sbjct: 343 GIENYSRHLSGARPGEPPPTLIDYLPPDALMFIDESHVTIGQLGGMYRGDRARKDTLVQY 402 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATP +E G +VEQ++RPTGLVDP VE Sbjct: 403 GFRLPSALDNRPLTFEEFESKVRQCIFVSATPSDYEATHA-GQVVEQVVRPTGLVDPEVE 461 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV EI +G R+L+T LTKRMAEDLT++L + +RVRY+HS++ T+E Sbjct: 462 VRPATTQVDDVLSEITARVARGHRVLVTTLTKRMAEDLTDFLADHQVRVRYLHSDIDTVE 521 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILD DKEGFLRS+ SLIQTIGRAAR Sbjct: 522 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSERSLIQTIGRAAR 581 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 N+ K ILYAD IT+S+Q AIDET RRR+KQL+ N +H I P+ V +++ E+ID + Sbjct: 582 NLEGKAILYADQITRSMQRAIDETARRRQKQLDFNAEHGIVPRGVVKQVRELIDGVYDLS 641 Query: 737 -----------------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773 LLE A ID + + ++ ++ L KQM Sbjct: 642 GTESRPAAPGAAPGHGLGGVDDALLERTAEKLQGIDTRNEAQVSRE----IRRLEKQMAT 697 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQG 801 A NL+FE+AA++RDE+ LK + G Sbjct: 698 YARNLDFEKAAQVRDELAALKQLLFGSG 725 >gi|237801114|ref|ZP_04589575.1| excinuclease ABC subunit B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023971|gb|EGI04028.1| excinuclease ABC subunit B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 671 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENGRYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|319762893|ref|YP_004126830.1| excinuclease abc, b subunit [Alicycliphilus denitrificans BC] gi|330824972|ref|YP_004388275.1| excinuclease ABC subunit B [Alicycliphilus denitrificans K601] gi|317117454|gb|ADU99942.1| excinuclease ABC, B subunit [Alicycliphilus denitrificans BC] gi|329310344|gb|AEB84759.1| excinuclease ABC, B subunit [Alicycliphilus denitrificans K601] Length = 695 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/660 (56%), Positives = 487/660 (73%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AIA+L++G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 23 FELFQPYPPAGDQPEAIAKLVEGVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 83 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SLLER D ++V++VS IYGIG+ ESY +M++ L+ GD + Q+E+++ L++ QY+R Sbjct: 143 SCTKSLLERRDVVIVATVSAIYGIGNPESYHRMVMTLRAGDRMGQREVIAQLIRMQYQRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ + + +Y Sbjct: 203 DQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVQQKIPRFTVY 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IKEEL+ RL +EG+L+EAQRLEQR +DLEML G C+ Sbjct: 263 PSSHYVTPRDVVLGAVETIKEELRERLEFFAREGKLVEAQRLEQRTRFDLEMLSEVGHCK 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PGEPP TL +Y+P D+L+F+DESH I Q++ MY GD RK TL EY Sbjct: 323 GIENYTRHLSGAAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRSRKTTLVEY 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E E G IV+Q++RPTGLVDP VE Sbjct: 383 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQIVDQVVRPTGLVDPEVE 441 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV EI L ++ R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+E Sbjct: 442 VRPASTQVDDVLQEIRLRVEKNERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDVDTVE 501 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 502 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 561 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD +T S++ AI ET RRR KQ+ HN+ I P+S+ +++ ++ID + E Sbjct: 562 NVNGKAILYADRVTDSMKKAIGETERRRAKQIAHNEALGITPRSIVKQVRDLIDGVYSEK 621 Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ A+ +S+K +K L K+M A NL FE+AAR+RDE+ RLK Sbjct: 622 AGQEALRLEQEAARHAELEEMSEKDIAREIKRLEKRMLEHARNLEFEQAARVRDELARLK 681 >gi|261492026|ref|ZP_05988601.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312309|gb|EEY13437.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 672 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 488/661 (73%), Gaps = 7/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G + Q+E+LS L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV GD I+I+P+ ++VA RV +F ++IE +S F PLTG+ + V IY Sbjct: 188 DQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGRSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILEAIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGAYELEKNPD-VVDQVVRPTGLLDPIIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N+N K ILY D IT S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSVK 606 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + A + S+K+ + LK+L +QM A +L FE+AA +RD++++LK Sbjct: 607 PKRGKQAVKKAENSATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQQLK 666 Query: 795 S 795 + Sbjct: 667 A 667 >gi|94309964|ref|YP_583174.1| excinuclease ABC subunit B [Cupriavidus metallidurans CH34] gi|93353816|gb|ABF07905.1| excinuclease of nucleotide excision repair, DNA damage recognition component [Cupriavidus metallidurans CH34] Length = 697 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/676 (55%), Positives = 492/676 (72%), Gaps = 8/676 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + K +TF FQ+ Y P+GDQP AI QL++G+ Q LLGVTGSGKTFTMA V Sbjct: 12 DEDKFVTFPGSPFQLYQPYSPAGDQPEAIRQLVEGVEDGLSYQTLLGVTGSGKTFTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARMGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SLLER D I+V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPSEYHQMILTLRTGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+++IFP+ ++A RV +F ++++ + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTLDIFPAEHAEMAVRVELFDDEVDSLQFFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL KE RL+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEDIKVELRERLDFFYKENRLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLTELGFCKGIENYSRHLSGAKPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL EYGFRLPS +DNRPL+F+E+ + V+ATP ++E E G +VEQ+ Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFDEYERKMRQAVFVTATPANYEKEHA-GQVVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+D+ EI+ + R+L+T LTKRMAE LTE+L E ++ Sbjct: 431 VRPTGLVDPVIEVRPATTQVDDLLGEIHQRVKVNERVLVTTLTKRMAEQLTEFLSENGVK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILY D +T S+++AI ET RRREKQ+ N+ + I P+ V ++ Sbjct: 551 RSLIQTIGRAARNVNGTAILYGDRMTDSMKVAIRETERRREKQMAFNEANGITPRGVVKR 610 Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D ++ A++ +S+K+ +K L KQM A NL FE+AA+ Sbjct: 611 IKDIIDGVYNADDVKAELTAAAERARYEDMSEKQVAKEIKRLEKQMLDHAKNLEFEKAAQ 670 Query: 786 IRDEIKRLKSSPYFQG 801 +RD++ +L+S + G Sbjct: 671 VRDQLAKLRSQVFGAG 686 >gi|299769171|ref|YP_003731197.1| excinuclease ABC subunit B [Acinetobacter sp. DR1] gi|298699259|gb|ADI89824.1| excinuclease ABC subunit B [Acinetobacter sp. DR1] Length = 673 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/666 (56%), Positives = 482/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVSRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+YIPED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPSGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ IVEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 IRPVLTQVDDVLSEINIRKSLNERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732 NV K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S V++ + E+ Sbjct: 546 NVKGKAILYADRITDSMQKAIDETDRRRAKQIEFNELHGITPRSAVRQAVKEIDSGEVLS 605 Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ID +LE A +S D + + K H+ L K M A+ +L FE+AARIRDE Sbjct: 606 DDEIDEKVLEQAQA--LSADERHILSDPKLFTKHITKLEKDMLKASKDLQFEQAARIRDE 663 Query: 790 IKRLKS 795 I RLK+ Sbjct: 664 ILRLKA 669 >gi|114047410|ref|YP_737960.1| excinuclease ABC subunit B [Shewanella sp. MR-7] gi|113888852|gb|ABI42903.1| Excinuclease ABC subunit B [Shewanella sp. MR-7] Length = 673 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/667 (55%), Positives = 486/667 (72%), Gaps = 14/667 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD++ Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGTFRV G+ I+IFP+ + RV +F ++IE +SEF PLTGQ ++ + Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A + IK+EL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ G IVEQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ E+ R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVNIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT+S+ A+ ET RRREKQ +N +H I P+ V ++I +V+D + Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMD---V 600 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787 +D + L +++ K K + + L KQMH A NL FEEAA +R Sbjct: 601 DDGRESEKGYRQSSLDKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEEAAALR 660 Query: 788 DEIKRLK 794 DE+KRL+ Sbjct: 661 DEVKRLR 667 >gi|260779308|ref|ZP_05888200.1| excinuclease ABC subunit B [Vibrio coralliilyticus ATCC BAA-450] gi|260605472|gb|EEX31767.1| excinuclease ABC subunit B [Vibrio coralliilyticus ATCC BAA-450] Length = 676 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/668 (55%), Positives = 489/668 (73%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY PSGDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 FDLVSDYQPSGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY QM++ ++ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPQSYLQMMLHVRRGDVMDQRDILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I++FP+ + A R+ MF ++I+ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISIFDPLTGVVKQRDLPRFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL+ R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDKILDAIENIKVELESRKKHLLDNNKLLEEQRISQRTQFDIEMMTELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSDGEVADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRSAKDERVLVTTLTKRMAEDLTEYLTEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ K ILYAD++TKS+ A+ ET RRREKQ +N K I PQ++K I ++++ L Sbjct: 545 RNISGKAILYADSVTKSMHKAMGETNRRREKQQAYNDKMGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +Q+ LSK ++ + + L QM+ A +L FE AA Sbjct: 602 DIAKSKKQRTNKQVPLSKVAEPSQSYNVMTPQQLEKEISKLEAQMYQHAQDLEFEAAAEK 661 Query: 787 RDEIKRLK 794 RD+I++L+ Sbjct: 662 RDQIEKLR 669 >gi|239996404|ref|ZP_04716928.1| excinuclease ABC subunit B [Alteromonas macleodii ATCC 27126] Length = 671 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/660 (55%), Positives = 487/660 (73%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L+ G+ S Q LLGVTGSGKTFTMA VI+ +QRP +++A Sbjct: 5 FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G ESY +M++ L+ GD+++Q+++L L + QYKR Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD I+IFP+ E A RV +F ++I++IS F PLTG ++V ++ Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+++IKEEL R +L++ +L+E QR+ QR +D+EM+ G C Sbjct: 245 PKTHYVTPREKILNAIEHIKEELGDRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ Q+ MYRGD RK TL E+ Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + P TI VSATPG +EL++ G IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELKKTDGEIVEQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EI + R+L+T LTKRMAEDL+EYL E ++VRY+HS++ T+E Sbjct: 425 VRPVATQVDDVLSEIQKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +VN K ILYAD+ITKS++ A+DET RRREKQ+ HN+ + I P + + I +++D Sbjct: 545 HVNGKAILYADSITKSMKKAMDETERRREKQMAHNEANGITPMRLNKPITDIMDLGDSAH 604 Query: 741 AATTNISI------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ + + QQ + S + + L KQM A L FE+AA +RD+I+ L+ Sbjct: 605 PASGKVRLRKVEEKKKQQKTASATELMDQITELEKQMFEYARELEFEKAASLRDDIEALR 664 >gi|219872236|ref|YP_002476611.1| excinuclease ABC subunit B [Haemophilus parasuis SH0165] gi|219692440|gb|ACL33663.1| excinuclease ABC subunit B [Haemophilus parasuis SH0165] Length = 671 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/660 (56%), Positives = 489/660 (74%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L++G++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 8 FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +DVA RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHNLGRVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ +I +Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDK 606 Query: 738 LEDAATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + S D Q S+K+ + LK L +QM A +L FE+AA +RD+I +LK+ Sbjct: 607 PKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIHQLKA 666 >gi|330951646|gb|EGH51906.1| excinuclease ABC subunit B [Pseudomonas syringae Cit 7] Length = 671 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/665 (56%), Positives = 486/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRREKQL N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|148358232|ref|YP_001249439.1| excinuclease ABC subunit B [Legionella pneumophila str. Corby] gi|296105585|ref|YP_003617285.1| excinuclease ABC subunit B [Legionella pneumophila 2300/99 Alcoy] gi|189037981|sp|A5I9P3|UVRB_LEGPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|148280005|gb|ABQ54093.1| excinuclease ABC subunit B [Legionella pneumophila str. Corby] gi|295647486|gb|ADG23333.1| excinuclease ABC subunit B [Legionella pneumophila 2300/99 Alcoy] Length = 663 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/655 (56%), Positives = 479/655 (73%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RP ++M Sbjct: 4 LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ +Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + RG FRV GD I+IFP+ E A R+ +F ++++ I+ F PLTG+ ++ + + I Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + ++ +K EL+ RL EL + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILETVEKVKAELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+ R GE PPTLF+Y+P D+LL +DESHVT+PQI GMYRGD RK TL Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPDALLIIDESHVTVPQIGGMYRGDRARKETLVN 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR +TQV+D+ EI QG RIL+T LTKRMAEDLTEYL E I+VRY+HS+V T+ Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV + ILYADT+T S+Q A+ ET RRREKQ N KH I P+ + + + ++++ + Sbjct: 543 RNVKGRAILYADTMTGSMQRALMETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + S ++ + +L KQM+ A N+ FE AA+IRDE LK Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657 >gi|330968328|gb|EGH68588.1| excinuclease ABC subunit B [Pseudomonas syringae pv. actinidiae str. M302091] Length = 671 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQ+ N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|226951486|ref|ZP_03821950.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Acinetobacter sp. ATCC 27244] gi|226837779|gb|EEH70162.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) [Acinetobacter sp. ATCC 27244] Length = 680 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 482/664 (72%), Gaps = 10/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T+Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 13 FELVTNYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAKTQRPTIVMA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 73 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + +++ LV+ QY R Sbjct: 133 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A RV +F ++++ I F PLTG+ +R V + IY Sbjct: 193 ELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+ELK +L + +LLEAQR+EQR YDLEM++ G Sbjct: 253 PKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYTN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+PED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 313 GIENYSRHLSGRTAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTT+ VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 373 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPALYELEKSEQ-VVEQVVRPTGLIDPEIE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ Q R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 432 VRPVLTQVDDVLSEINIRRQLHERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 492 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 NV K ILYAD IT S++ AIDET RRR KQ+E N+ H I P+S + ++ ID +L Sbjct: 552 NVKGKAILYADRITDSMRKAIDETDRRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVLS 611 Query: 739 EDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D N IS D Q L K H+ L K+M A+ L FE+AAR+RDEI Sbjct: 612 DDEIDENALQQAQSISADEQHLLSDPKLFAKHIGKLEKEMLKASKELQFEQAARLRDEIV 671 Query: 792 RLKS 795 RLK+ Sbjct: 672 RLKA 675 >gi|91775673|ref|YP_545429.1| excinuclease ABC subunit B [Methylobacillus flagellatus KT] gi|91709660|gb|ABE49588.1| Excinuclease ABC subunit B [Methylobacillus flagellatus KT] Length = 679 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/661 (55%), Positives = 487/661 (73%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + P+GDQPAAI L G++ K Q LLGVTGSGKT+TMA VI RPAIVMA Sbjct: 10 YKLFQPFPPAGDQPAAIEALTAGVNEGLKFQTLLGVTGSGKTYTMANVIARTGRPAIVMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 70 PNKTLAAQLYSEFKEFFPQNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYGIG Y M++ + +G + Q+++++ L+ QY+R Sbjct: 130 SATKALLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHLGMKISQRDIVNKLIAMQYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +++FPS + A R+S+F ++IE I+ F PLTGQ + +I+ Sbjct: 190 DFDFSRGTFRVRGDVLDVFPSENSETAVRISLFDDEIENITLFDPLTGQIFNKIHNFRIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVT R AM+ IK+EL+ R+ K G+L+EAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTAREATIRAMETIKQELRERVDFYIKTGKLVEAQRIEQRTRFDLEMLNEIGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG+ PPTL +Y+P+++L+ +DESHVT+PQI GMY+GD RK L +Y Sbjct: 310 GIENYSRHLTGRQPGDAPPTLIDYLPKNALMIIDESHVTVPQIGGMYKGDRARKENLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + P I VSATP +E Q IVEQ++RPTGL+DP + Sbjct: 370 GFRLPSAMDNRPLKFEEFERIIPQCIFVSATPAEYEATHQQR-IVEQVVRPTGLIDPEII 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A TQV+D+ EI L + G R+L T LTKRMAEDLT+YL E +RVRY+HS++ T+E Sbjct: 429 VKPADTQVDDLLSEIKLRVEAGERVLATTLTKRMAEDLTDYLSEHGVRVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVI YA+ +T+S++LA+DET RRR KQ+ N +H I P+ V ++I ++I+ + ++ Sbjct: 549 NLNGKVIFYANKVTRSMKLAMDETQRRRAKQMAFNAEHGITPKGVNKRIKDIIEGVYSKE 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 + + ++ S +++K+ +K L K MH +A NL FE+AA RD++++LK++ Sbjct: 609 DHQRDRKVAEERASYAQMTEKQLVKEMKRLEKAMHESAKNLEFEKAAEYRDQLRKLKNNF 668 Query: 798 Y 798 Y Sbjct: 669 Y 669 >gi|211909246|gb|ACJ12896.1| UvrB [Vibrio natriegens] Length = 676 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/669 (55%), Positives = 490/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y PSGDQP AI QLL G+ S Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YELVSSYQPSGDQPDAIKQLLDGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY QM++ L+ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R +L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRVLEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSDGDIADQVVRPTGLLDPIL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD+ITKS++ A+DET RRREKQ +N++ I PQ++ I ++++ L Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEEMGIVPQALTRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + +Q+ LSK ++ + + L M+ A +L FE AA Sbjct: 602 DITKSKRQRTGKQVPLSKVAEPSQSYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661 Query: 787 RDEIKRLKS 795 RDEI++L++ Sbjct: 662 RDEIEKLRA 670 >gi|254362088|ref|ZP_04978211.1| excinuclease ABC subunit B [Mannheimia haemolytica PHL213] gi|153093646|gb|EDN74607.1| excinuclease ABC subunit B [Mannheimia haemolytica PHL213] Length = 672 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/661 (56%), Positives = 486/661 (73%), Gaps = 7/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP+AIA+L +G++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G + Q+E+LS L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV GD I+I+P+ ++VA RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGHSLGKVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRERILEAIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGAYELEKNPD-VVDQVVRPTGLLDPIIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N+N K ILY D IT S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDK 606 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + A + S+K+ + LK+L +QM A +L FE+AA +RD+++ LK Sbjct: 607 PKRGKQAVKKAENSATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLK 666 Query: 795 S 795 + Sbjct: 667 A 667 >gi|254523426|ref|ZP_05135481.1| excinuclease ABC, B subunit [Stenotrophomonas sp. SKA14] gi|219721017|gb|EED39542.1| excinuclease ABC, B subunit [Stenotrophomonas sp. SKA14] Length = 674 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/667 (56%), Positives = 484/667 (72%), Gaps = 11/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L + Q LLGVTGSGKT+T+A VI+ +Q+P ++MA Sbjct: 5 FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D IVV++VS IYG+G+ E Y + + L G+ ++Q++L++ L + QY R Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV G+ I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R + A+ IK ELK RL +L E +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRERVLAAVDTIKVELKERLEQLYAENKLVEAQRLAQRTQFDLEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E+ Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P I VSATPG +E + I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEERCPRAIYVSATPGPYEYREAGDEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E N + G R+L+T LTKRMAE+LTEYL E IRVRY+HS+V T+E Sbjct: 425 IRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV K ILYAD IT+S+Q AIDET RRR KQ+E+N++H I P+SV I++V++ + Sbjct: 545 NVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604 Query: 741 AATTNISI-----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A A SLS + LK+L +QM+ A +L FE+AAR+RD+ Sbjct: 605 AEKEAKKGKGKSRAGVAEEGADYRSLSPAQLATRLKALEQQMYQHAKDLEFEDAARVRDQ 664 Query: 790 IKRLKSS 796 I++LK + Sbjct: 665 IRQLKEA 671 >gi|326796004|ref|YP_004313824.1| UvrABC system protein B [Marinomonas mediterranea MMB-1] gi|326546768|gb|ADZ91988.1| UvrABC system protein B [Marinomonas mediterranea MMB-1] Length = 676 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/665 (56%), Positives = 483/665 (72%), Gaps = 13/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L +GI + Q LLGVTGSGKTFT+A VI +RP I+MA Sbjct: 5 FEVVSAYQPAGDQPTAIAKLTQGIEAGLAHQTLLGVTGSGKTFTVANVIANAKRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+ +L L + QY R Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRAVLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I++FP+ ED A+R+ +F ++++ +S PLT + IR V I IY Sbjct: 185 DLVFERGNFRVRGDVIDVFPADSEDTAFRIELFDDEVDNLSIIDPLTNKTIRKVPRITIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A++ IK EL RL +L+ +L+E QRLEQR YDLEM++ G C Sbjct: 245 PKTHYVTPRETIVDAIERIKTELDQRLEQLKSLNKLVELQRLEQRTNYDLEMMQELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P ++LL +DESHVT+PQ+ MY+GD RK L EY Sbjct: 305 GIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQVGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEEW ++P TI VSATPG +E E Q +VEQI+RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPMRFEEWESIKPQTIFVSATPGKYEAEH-QDWVVEQIVRPTGLIDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EINL G RIL+T LTKRMAEDLT+YLYE IRVRY+HS++ T+E Sbjct: 424 IRPVATQVDDLLSEINLRLPTGERILVTTLTKRMAEDLTDYLYEHGIRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD IT S+ AI+ET RRR KQ N++H I P+ + + + ++++ Sbjct: 544 NVNGKAILYADRITGSMGRAIEETDRRRVKQQAFNEEHGIVPKGITKSVEDIMEGAYNPG 603 Query: 741 AA---------TTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A S D Q S+ + KA +K L+K M A++NL FE AA RD+ Sbjct: 604 AGKGRGKQTRKVAEASKDYQVESMDDVAEVRKAIIK-LQKDMMEASENLQFELAAGYRDQ 662 Query: 790 IKRLK 794 I+ L+ Sbjct: 663 IRVLQ 667 >gi|323493131|ref|ZP_08098262.1| excinuclease ABC subunit B [Vibrio brasiliensis LMG 20546] gi|323312602|gb|EGA65735.1| excinuclease ABC subunit B [Vibrio brasiliensis LMG 20546] Length = 676 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/668 (55%), Positives = 488/668 (73%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY PSGDQP AI+QLL G+ S Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 FDLVSDYQPSGDQPTAISQLLDGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY +M++ ++ GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHIRRGDVMDQRDILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A R+ MF ++I+ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGAVKQRDLARYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL+ R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILDAIEEIKVELEGRKKYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GRN GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRNEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATPG++ELE+ G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFESLAPQTIFVSATPGNYELEKSDGEVADQVVRPTGLLDPQL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI L + + R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRLRSAKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ K ILYAD ITKS++ A+ ET RRREKQ ++N+K I PQ++K + ++++ L Sbjct: 545 RNVSGKAILYADRITKSMEKAMGETNRRREKQQQYNEKMGIEPQALKRNVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + ++ + LSK ++ + L QM+ A +L FE AA Sbjct: 602 DITKSKKQRTSKAVPLSKVAEPSQSYDVMTPQQLDKEIAKLEAQMYQHAQDLEFELAAEK 661 Query: 787 RDEIKRLK 794 RD+I +L+ Sbjct: 662 RDQIDQLR 669 >gi|319779606|ref|YP_004130519.1| Excinuclease ABC subunit B [Taylorella equigenitalis MCE9] gi|317109630|gb|ADU92376.1| Excinuclease ABC subunit B [Taylorella equigenitalis MCE9] Length = 670 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/654 (56%), Positives = 479/654 (73%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + PSGDQP+AI L++G+ Q L+GVTGSGKTFTMA VI + RPA+++A Sbjct: 12 FLLYQSWEPSGDQPSAIKSLVEGVQDGLMNQTLIGVTGSGKTFTMANVIAQLGRPALILA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+IN+ I++MR Sbjct: 72 HNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSNINDHIEQMRL 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VS IYGIG Y M++ L+ GD + ++ +L LV QY+R Sbjct: 132 SATKSLLERRDTIIVGTVSTIYGIGDASDYQAMVLILRTGDKISRESILERLVSMQYERN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I+IFPS ++A RV++F +++E++ F PLTG+ +++ +Y Sbjct: 192 DMEFARGHFRVRGDIIDIFPSESPELALRVTLFDDELEKLELFDPLTGRIRQDIIRFTLY 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +S YVTPR T+ A++ IKEELK R+ E G L+ AQR+EQR +DLEML G C+ Sbjct: 252 PSSLYVTPRSTVLRAIETIKEELKQRVKEFLDRGELVYAQRIEQRTRFDLEMLHELGFCK 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PG+PPPTL +Y+P+D+L+F DESHV + Q+ GMYRGD RKATL ++ Sbjct: 312 GIENYSRHLSGAKPGDPPPTLIDYLPKDALMFFDESHVMMGQLRGMYRGDHSRKATLVQF 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ +I VSATP +ELE+ IVEQ++RPTGLVDP VE Sbjct: 372 GFRLPSALDNRPLKMEEFEARMKQSIFVSATPAEYELERSDN-IVEQVVRPTGLVDPTVE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ E L +G R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+E Sbjct: 431 IRPALTQVDDLLGEAKLRIAKGERVLVTTLTKRMAEDLTEYLSENFLRVRYLHSDIDTVE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 491 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N ILYAD IT S++ AIDET RR EKQ+ +NK H I P++VK+ + ++ID +L + Sbjct: 551 NINGSAILYADKITDSMKKAIDETERRHEKQMAYNKAHGITPKTVKKAVKDIIDGVLHDS 610 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ID L +K+ + +K L KQM A NL FEEAA+ RD++ +LK Sbjct: 611 LEDMQETIDMSDLLKDEKRLSSEIKKLEKQMLEHAKNLEFEEAAKARDQLSKLK 664 >gi|307944241|ref|ZP_07659582.1| UvrABC system protein B [Roseibium sp. TrichSKD4] gi|307772587|gb|EFO31807.1| UvrABC system protein B [Roseibium sp. TrichSKD4] Length = 713 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/508 (67%), Positives = 416/508 (81%), Gaps = 1/508 (0%) Query: 97 QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156 Q T +V+AL+ LI+S NPL KNG++W PHR + ++ +DY P GDQP A Sbjct: 193 QGATATVEALSALIESGNPLHKNGELWVPHRPERPEKSEGGVPI-KLASDYEPKGDQPTA 251 Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 IA L++GI + ++ Q+LLGVTGSGKT+TMA+VI QRPA+++APNK LAAQLY EFK+F Sbjct: 252 IADLVEGIDNGDQTQVLLGVTGSGKTYTMAQVISRTQRPALILAPNKTLAAQLYGEFKSF 311 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 FP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRHSATR+LLER+D I+V+ Sbjct: 312 FPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHSATRALLERDDVIIVA 371 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 SVSCIYGIGSVE+Y+ M +++G+ ++Q++L++ LV QYKR D RGTFRV GD+I Sbjct: 372 SVSCIYGIGSVETYTAMTFAIEVGERIDQRQLIADLVALQYKRNDAAFQRGTFRVRGDTI 431 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 E+FP+H ED AWRVS+FG++IE I+EF PLTG+K ++++KIYANSHYVTP+PTLN A Sbjct: 432 ELFPAHYEDRAWRVSLFGDEIESITEFDPLTGKKSGELKSVKIYANSHYVTPKPTLNQAT 491 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 K IK ELK RL EL GRLLEAQRLEQR +DLEMLE TGSC IENYSRYLTGRNPGE Sbjct: 492 KSIKAELKHRLEELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRYLTGRNPGE 551 Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516 PPPTLFEY+P+++L+F DESHVTIPQI MYRGDF RKATLAEYGFRLPSCMDNRPLRFE Sbjct: 552 PPPTLFEYLPDNALVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 611 Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576 EWN +RP +I VSATPGSWE+EQ G+ EQ+IRPTGL+DPPV+IR A +QV+D+ E+ Sbjct: 612 EWNAMRPQSIAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVDIRPAGSQVDDLLGEVR 671 Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYE 604 A +G R L+T LTKRMAEDLTEYL+E Sbjct: 672 ETAAKGYRTLVTTLTKRMAEDLTEYLHE 699 >gi|332759678|gb|EGJ89981.1| excinuclease ABC, B subunit [Shigella flexneri 4343-70] gi|333007118|gb|EGK26610.1| excinuclease ABC, B subunit [Shigella flexneri K-218] Length = 673 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/664 (56%), Positives = 479/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM++ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDL EYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLAEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D T S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + + K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|317491235|ref|ZP_07949671.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920782|gb|EFV42105.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 672 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/665 (56%), Positives = 479/665 (72%), Gaps = 13/665 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + + P GDQP AI +L G+ + Q LLGVTGSGKTFT+A VI + RP +VM Sbjct: 4 MFKLHSTFKPDGDQPEAIRRLEAGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR Sbjct: 64 APNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D IVV+SVS IYG+G ++Y +M++ L G ++Q+ +L L + QY R Sbjct: 124 LSATKALLERKDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMIIDQRAILRRLSELQYAR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ ED A RV +F ++E +S F PLTGQ I+ V+ + Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESEDEALRVELFDEEVERLSLFDPLTGQLIQEVQRFTV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK +L R L +LLE QRL QR +DLEM+ G C Sbjct: 244 YPKTHYVTPRERILQAMEEIKVDLAERRQVLLANNKLLEEQRLTQRTQFDLEMMNELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL E Sbjct: 304 SGIENYSRYLSGRKPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG++ELE+ G IV+Q++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGGDIVDQVVRPTGLLDPLI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+ Sbjct: 424 EVRPVATQVDDLLSEIRIREAINERVLVTTLTKRMAEDLTEYLDEHGVRVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K ILY D IT S++ AI ET RRR KQ +N +H I PQ++ +K+ +++ L Sbjct: 544 RNLNGKAILYGDRITNSMEKAIGETERRRAKQQAYNLEHGITPQALNKKVSDILQ---LG 600 Query: 740 DAATTNISIDAQQL----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 +A++ + + +LS K+ + ++ L QM+ A NL FEEAA +RD+ Sbjct: 601 EASSRSKGKHGRSSKAAESSAAYQALSPKQIEQRIRDLEAQMYKHAQNLEFEEAASLRDD 660 Query: 790 IKRLK 794 I+ L+ Sbjct: 661 IQALR 665 >gi|71737418|ref|YP_274169.1| excinuclease ABC subunit B [Pseudomonas syringae pv. phaseolicola 1448A] gi|90111045|sp|Q48KA6|UVRB_PSE14 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71557971|gb|AAZ37182.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 671 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQL N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNHEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|134296394|ref|YP_001120129.1| excinuclease ABC subunit B [Burkholderia vietnamiensis G4] gi|14572552|gb|AAK64610.1| excinuclease ABC subunit B [Burkholderia cepacia] gi|134139551|gb|ABO55294.1| Excinuclease ABC subunit B [Burkholderia vietnamiensis G4] Length = 697 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+H Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVHDGLSFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL +EG+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAIETIKDELRERLEFFHREGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVSAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|320324863|gb|EFW80935.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str. B076] Length = 671 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDTGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQL N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|52840327|ref|YP_094126.1| excinuclease ABC subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81823491|sp|Q5ZZD9|UVRB_LEGPH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|52627438|gb|AAU26179.1| excinuclease ABC subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 663 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/655 (56%), Positives = 479/655 (73%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RP ++M Sbjct: 4 LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ +Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + RG FRV GD I+IFP+ E A R+ +F ++++ I+ F PLTG+ ++ + + I Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + ++ +K EL+ RL EL + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+ R GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD RK TL Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR +TQV+D+ EI QG RIL+T LTKRMAEDLTEYL E I+VRY+HS+V T+ Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV + ILYADTIT S+Q A+ ET RRREKQ N +H I P+ + + + ++++ + Sbjct: 543 RNVKGRAILYADTITGSMQRALTETERRREKQKAFNLEHGITPKGINKSVEDILEGAYIG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T Q S ++ + +L KQM+ A N+ FE AA+IRDE LK Sbjct: 603 KRKTVVAEKSPQYTHWSPQELVKQINALEKQMYSHAQNMEFELAAKIRDEYLLLK 657 >gi|260551513|ref|ZP_05825697.1| excinuclease ABC subunit B [Acinetobacter sp. RUH2624] gi|260405507|gb|EEW99000.1| excinuclease ABC subunit B [Acinetobacter sp. RUH2624] Length = 673 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/666 (56%), Positives = 483/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ G+ + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+P+D+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ + +VEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSEQ-VVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732 NV K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S V++ + E+ Sbjct: 546 NVKGKAILYADRITDSMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLS 605 Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ID +LE A +S D + + K H+ L K+M A+ +L FE+AARIRDE Sbjct: 606 DDQIDEKILEQAQA--LSADDRHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663 Query: 790 IKRLKS 795 I RLK+ Sbjct: 664 IVRLKA 669 >gi|207725269|ref|YP_002255665.1| uvrABC system protein B [Ralstonia solanacearum MolK2] gi|300704659|ref|YP_003746262.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition component [Ralstonia solanacearum CFBP2957] gi|206590503|emb|CAQ37465.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b) [Ralstonia solanacearum MolK2] gi|299072323|emb|CBJ43657.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition component [Ralstonia solanacearum CFBP2957] Length = 696 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/674 (55%), Positives = 488/674 (72%), Gaps = 9/674 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI QLL+GI Q LLGVTGSGKT+TMA V Sbjct: 12 DESKFVAFEGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A R+ +F ++++ + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A+ IK EL+ RL KE +L+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL+EYGFRLPS +DNRPL+F E+ + VSATP +E ++ +VEQ+ Sbjct: 372 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILYAD IT S++ AI ET RRR KQ+ HN+ H I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGTAILYADRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + AQ+ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNVDDARAELKA-AQEAARYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPY 798 +RD++ +LKS + Sbjct: 671 AVRDQLAKLKSQVF 684 >gi|307608818|emb|CBW98210.1| excinuclease ABC subunit B [Legionella pneumophila 130b] Length = 663 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/655 (56%), Positives = 478/655 (72%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RP ++M Sbjct: 4 LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ +Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + RG FRV GD I+IFP+ E A R+ +F ++++ I+ F PLTG+ ++ + + I Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + ++ +K EL+ RL EL + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+ R GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD RK TL Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR +TQV+D+ EI QG RIL+T LTKRMAEDLTEYL E I+VRY+HS+V T+ Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 483 ERIEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV + ILYAD IT S+Q A+ ET RRREKQ N KH I P+ + + + ++++ + Sbjct: 543 RNVKGRAILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + S ++ + +L KQM+ A N+ FE AA+IRDE LK Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657 >gi|298486485|ref|ZP_07004545.1| Excinuclease ABC subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158962|gb|EFI00023.1| Excinuclease ABC subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320329228|gb|EFW85225.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str. race 4] gi|330888119|gb|EGH20780.1| excinuclease ABC subunit B [Pseudomonas syringae pv. mori str. 301020] Length = 671 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQL N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|293609812|ref|ZP_06692114.1| UvrABC system protein B [Acinetobacter sp. SH024] gi|292828264|gb|EFF86627.1| UvrABC system protein B [Acinetobacter sp. SH024] gi|325123037|gb|ADY82560.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus PHEA-2] Length = 673 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/664 (56%), Positives = 481/664 (72%), Gaps = 10/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI +L+ GI + QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V + E++ LV+ QY R Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+PED+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ +VEQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-VVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ R+L+T LTKRMAEDLT YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 NV K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S ++++ ID +L Sbjct: 546 NVKGKAILYADRITDSMQKAIDETERRRAKQIEFNELHGITPRSAVRQVIKEIDSGEVLS 605 Query: 739 EDAATTNISIDAQQLSLSK-------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D + AQ LS + K H+ L K+M A+ +L FE+AARIRDEI Sbjct: 606 DDEIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEII 665 Query: 792 RLKS 795 RLK+ Sbjct: 666 RLKA 669 >gi|29653858|ref|NP_819550.1| excinuclease ABC subunit B [Coxiella burnetii RSA 493] gi|161829993|ref|YP_001596449.1| excinuclease ABC subunit B [Coxiella burnetii RSA 331] gi|212212986|ref|YP_002303921.1| excinuclease ABC subunit B [Coxiella burnetii CbuG_Q212] gi|81839094|sp|Q83E18|UVRB_COXBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037963|sp|A9NC09|UVRB_COXBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698333|sp|B6J1E8|UVRB_COXB2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|29541121|gb|AAO90064.1| excinuclease ABC subunit B [Coxiella burnetii RSA 493] gi|161761860|gb|ABX77502.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 331] gi|212011396|gb|ACJ18777.1| excinuclease ABC subunit B [Coxiella burnetii CbuG_Q212] Length = 672 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/661 (55%), Positives = 488/661 (73%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L+ G+ Q LLGVTGSGKTFT+A IE +QRP +++ Sbjct: 5 FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR Sbjct: 65 PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++ ER+D I++++VS IYG+G +SY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R T+RV GD I+I+P+ E A RV +F +++E +S F PLTG+ +R V I +Y Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L + + IK ELK RL +LEK +L+E QRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ L P TI +SATPG +E +Q +VE ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A Q R+L+T LTKRMAEDLTEY E N+RVRY+HS++ T+E Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ K ILYAD IT S++ A++E RRR Q +N+KH+I P+S+++ + E+I+ Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603 Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A +A+ ++++ K+ L+ L +QM+ A NL FEEAA +RD+I+ + Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663 Query: 794 K 794 + Sbjct: 664 R 664 >gi|194365163|ref|YP_002027773.1| excinuclease ABC subunit B [Stenotrophomonas maltophilia R551-3] gi|194347967|gb|ACF51090.1| excinuclease ABC, B subunit [Stenotrophomonas maltophilia R551-3] Length = 674 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/667 (55%), Positives = 486/667 (72%), Gaps = 11/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L + Q LLGVTGSGKT+T+A VI+ +Q+P ++MA Sbjct: 5 FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D IVV++VS IYG+G+ E Y + + L G+ ++Q++L++ L + QY R Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV G+ I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN+ +Y Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNLMRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R + A++ IK ELK RL +L + +L+EAQRL QR +D+EM+ G C Sbjct: 245 PKTHYATTRERVLAAVETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDIEMMAEVGFCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI M++GD RK TL E+ Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEEW P +I VSATPG +E + I E ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEWEERCPRSIYVSATPGPYEYREAGEEITELVVRPTGLIDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ E N + G R+L+T LTKRMAE+LTEYL E IRVRY+HS+V T+E Sbjct: 425 IRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV K ILYAD IT+S+Q AIDET RRR KQ+E+N++H I P+SV I++V++ + Sbjct: 545 NVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604 Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A A SLS + A LK+L ++M+ A +L FE+AAR+RD+ Sbjct: 605 AEKEAKKGKGKGRAGVAEEAADYRSLSPAQLAARLKALEQKMYQHAKDLEFEDAARVRDQ 664 Query: 790 IKRLKSS 796 I++LK + Sbjct: 665 IRQLKEA 671 >gi|82702490|ref|YP_412056.1| excinuclease ABC subunit B [Nitrosospira multiformis ATCC 25196] gi|82410555|gb|ABB74664.1| Excinuclease ABC subunit B [Nitrosospira multiformis ATCC 25196] Length = 695 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/665 (54%), Positives = 489/665 (73%), Gaps = 8/665 (1%) Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 ITF +++ + P+GDQ +AI +L++GI Q LLGVTGSGKTFTMA VI + Sbjct: 3 ITFPNSPYKLNQLFQPAGDQSSAIEKLVEGIEDGLAFQTLLGVTGSGKTFTMANVIARLG 62 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPAI+MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE Sbjct: 63 RPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINE 122 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 I++MR SAT++LLER+D I+V++VSCIYGIG Y MI+ L+ + + Q++ + L Sbjct: 123 HIEQMRLSATKALLERDDAIIVATVSCIYGIGDPVDYHGMILHLREHEKITQRQAIQRLT 182 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 + QY+R + RGTFRV GD ++IFP+ + A RVS+F +++E ++ F PLTG+ R Sbjct: 183 EMQYERNEFEFSRGTFRVRGDVLDIFPAESSETAVRVSLFDDEVESMTLFDPLTGRTSRK 242 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 V +Y +SHYVTPR T A++ IK EL+ R+ + +L+E QR+EQR +DLEML Sbjct: 243 VSRYTVYPSSHYVTPRSTTLRAIETIKTELRERMDFFHQHNKLVELQRIEQRTRFDLEML 302 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C+ IENYSR+L+G+ PGEPPPTL +Y+P +L+ +DESHVT+PQ+ GMY+GD R Sbjct: 303 NELGFCKGIENYSRHLSGKKPGEPPPTLMDYLPPRTLMVIDESHVTVPQVGGMYKGDRAR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K L +YGFRLPS +DNRPLRF+E+ + P T+ VSATP +E + G +VEQ++RPTG Sbjct: 363 KENLVDYGFRLPSALDNRPLRFDEFRKIMPQTVFVSATPAEFE-KIHSGQVVEQVVRPTG 421 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 LVDP +E+R A TQV+D+ E+ L + R+L+T LTKRMAEDLT+Y + IRVRY+H Sbjct: 422 LVDPQIEVRPASTQVDDLMSEVRLRTAKDERVLVTTLTKRMAEDLTDYFADHGIRVRYLH 481 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EI+RDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQ Sbjct: 482 SDIDTVERVEIVRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 541 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAAR++N +LYAD IT+S++LA+DET RRR KQ+ N++H I P+SV +++ ++I Sbjct: 542 TIGRAARHINGTALLYADRITESMRLAMDETERRRNKQILFNQEHGITPRSVHKRVKDLI 601 Query: 734 DPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D + + A + Q ++S+ + +KSL KQMH AA NL FE+AA RDE+ Sbjct: 602 DGVYSMETAQQQLKAAQTQARYEAMSETQLAKEIKSLEKQMHEAAKNLEFEKAAEYRDEL 661 Query: 791 KRLKS 795 K+LK+ Sbjct: 662 KKLKN 666 >gi|54296068|ref|YP_122437.1| excinuclease ABC subunit B [Legionella pneumophila str. Paris] gi|81822670|sp|Q5X906|UVRB_LEGPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|53749853|emb|CAH11234.1| excinuclease ABC subunit B [Legionella pneumophila str. Paris] Length = 663 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/655 (55%), Positives = 479/655 (73%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RP ++M Sbjct: 4 LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ +Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + RG FRV GD I+IFP+ E A R+ +F ++++ I+ F PLTG+ ++ + + I Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + ++ +K EL+ RL EL + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+ R GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD RK TL Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR +TQV+D+ EI QG RIL+T LTKRMAEDLTEYL E I+VRY+HS+V T+ Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV + ILYADT+T S+Q A+ ET RRREKQ N KH I P+ + + + ++++ + Sbjct: 543 RNVKGRAILYADTMTGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + S ++ + +L KQM+ A N+ FE AA+IRDE LK Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKEINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657 >gi|268590298|ref|ZP_06124519.1| excinuclease ABC subunit B [Providencia rettgeri DSM 1131] gi|291314207|gb|EFE54660.1| excinuclease ABC subunit B [Providencia rettgeri DSM 1131] Length = 672 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/670 (56%), Positives = 480/670 (71%), Gaps = 14/670 (2%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 SKD F++ +D+ P GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI R Sbjct: 2 SKD---FKLYSDFQPGGDQPEAIHKLREGLQDGLAHQTLLGVTGSGKTFTIANVIAQENR 58 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P ++MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE Sbjct: 59 PTMLMAHNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I++MR SAT++LLER D IVV+SVS IYG+G +SY +M++ L G ++Q+ +L L Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLAD 178 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D RGTFRV G+ I+IFP+ ++ A RV +F +++E +S F PLTGQ V Sbjct: 179 LQYTRNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDDEVERLSLFDPLTGQIQHRV 238 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 +Y +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ Sbjct: 239 PRFTVYPKTHYVTPRERILEAMEQIKVELADRRKVLLENNKLLEEQRITQRTQFDLEMMN 298 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI MY+GD RK Sbjct: 299 ELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRK 358 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL EYGFRLPS +DNRP+RFEE+ L P TI VSATPG++EL++ ++EQ++RPTGL Sbjct: 359 ETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELDKSGNEVIEQVVRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E+R TQV+D+ EI + Q+ R+L+T LTKRMAEDLTEYL E RVRY+HS Sbjct: 419 LDPIIEVRPVSTQVDDLLSEIRIRVQKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN+N K ILY D IT S+Q AI ET RRR KQ+ N++H I PQ + +KI +++ Sbjct: 539 IGRAARNLNGKAILYGDRITNSMQKAIAETERRRAKQMAFNEEHGIVPQGLNKKIGDILQ 598 Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 +D N S+D Q S+S K+ + + L QM+ A +L FE AAR Sbjct: 599 IGHKVGGKGKSRTKDNTKNNNSVDIQ--SMSTKELEQRISQLEAQMYKHAQDLEFEAAAR 656 Query: 786 IRDEIKRLKS 795 +RDE++ ++S Sbjct: 657 VRDELQEIRS 666 >gi|312796019|ref|YP_004028941.1| Excinuclease ABC subunit B [Burkholderia rhizoxinica HKI 454] gi|312167794|emb|CBW74797.1| Excinuclease ABC subunit B [Burkholderia rhizoxinica HKI 454] Length = 755 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/684 (54%), Positives = 494/684 (72%), Gaps = 12/684 (1%) Query: 132 NNH----SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 N+H SK + F +Q+ + P+GDQP AI QL++GI Q LLGVTGSGKTF Sbjct: 67 NDHALDESKFVVFDGSPYQLYQPFPPAGDQPEAIRQLVEGIQDGLAFQTLLGVTGSGKTF 126 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 TMA VI + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D Sbjct: 127 TMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDL 186 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 +IEK+SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD V Sbjct: 187 FIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILTLRDGDRV 246 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 Q+++++ L+ QY R D+ RGTFRV GD+I++FP+ ++A RV +F +++E + F Sbjct: 247 GQRDIIARLIAMQYMRNDVDFQRGTFRVRGDTIDVFPAEHAEMAVRVELFDDEVESLHLF 306 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PLTG+ + + +Y +SHYVTPR T+ A++ IKEEL+ RL +EG+L+EAQRLE Sbjct: 307 DPLTGRVRQRIPRFTVYPSSHYVTPRDTVLRAVETIKEELRERLAFFHQEGKLVEAQRLE 366 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 QR +DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P DSL+F+DESHV I Q+ Sbjct: 367 QRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLCDYLPADSLMFLDESHVLIGQL 426 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 + MY GD RK L EYGFRLPS +DNRPL+F E+ + VSATP +E ++ G Sbjct: 427 NAMYNGDRARKENLVEYGFRLPSALDNRPLKFHEFERKMRQAVFVSATPAGYE-QRNAGQ 485 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 +VEQ++RPTGLVDP +E+R A +QV+DV EIN G R+L+TVLTKRMAE LTE+L Sbjct: 486 VVEQVVRPTGLVDPQIEVRPAISQVDDVLSEINQRVAAGERVLVTVLTKRMAEQLTEFLA 545 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 + ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEG Sbjct: 546 DHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEG 605 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLR++ SLIQTIGRAARNVN ILY DTIT S++ A+DET RRR KQ+++N+++ I P+ Sbjct: 606 FLRAERSLIQTIGRAARNVNGYAILYGDTITDSMRRALDETERRRRKQIQYNERNGIVPR 665 Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNF 780 V ++I ++ID + D A + ++ +S K+ +K L KQM A NL F Sbjct: 666 GVVKRIKDIIDGVYDVDDARAELRAQQERAKIEDMSDKQLAKEIKKLEKQMLDYAKNLEF 725 Query: 781 EEAARIRDEIKRLKSSPYFQGLDD 804 E+AA+ RD++ R K + + D Sbjct: 726 EKAAQTRDQLARFKQRAFGASVGD 749 >gi|288940113|ref|YP_003442353.1| excinuclease ABC subunit B [Allochromatium vinosum DSM 180] gi|288895485|gb|ADC61321.1| excinuclease ABC, B subunit [Allochromatium vinosum DSM 180] Length = 672 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/661 (55%), Positives = 488/661 (73%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L++G++ E LLGVTGSGKTFT+A VI +QRPA+++A Sbjct: 9 FELVSPFAPAGDQPEAIRRLVEGLNDGEAGLTLLGVTGSGKTFTIANVIAQVQRPALILA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+++INE I++MR Sbjct: 69 PNKTLAAQLYGEMREFFPRNAVEYFVSYYDYYQPEAYVPATDTYIEKDAAINEHIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G E+Y +M++ LK G+ ++Q+ +L L + QY R Sbjct: 129 SATKALLERRDVIIVATVSSIYGLGDPEAYLKMVLILKRGERIDQRAILRRLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I + RG +RV GD I+I P+ +D A R+++F ++IE +S F PLTG+ R V ++ Sbjct: 189 EIELSRGAYRVRGDVIDIHPAESDDEALRIALFDDEIETLSLFDPLTGEVRRQVSRYTVF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY TPR T+ A+ IK EL+ RL L +L+EAQRLEQR +DLEM+ G CQ Sbjct: 249 PKTHYATPRETILKAIDLIKPELRERLDWLRANDKLVEAQRLEQRTLFDLEMMLEVGYCQ 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL++Y+P D++L +DESHVT+PQ+ GMYRGD RK L Y Sbjct: 309 GIENYSRYLSGRQPGEPPPTLYDYLPPDAILVIDESHVTVPQLGGMYRGDRSRKENLVNY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ +P TI VSATP ++E+E G ++EQ++RPTGLVDP VE Sbjct: 369 GFRLPSALDNRPLQFEEFQSRQPQTIYVSATPRAFEIEHS-GAVIEQVVRPTGLVDPEVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+D+ EI R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T+E Sbjct: 428 VRPALSQVDDLLSEIGPRVAADERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTDSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N N K ILYAD IT S+Q AI+E+ RRR KQ+ N+ I PQ++++ + ++++ Sbjct: 548 NANGKAILYADRITGSMQRAIEESERRRAKQIAANEAQGITPQTIRKAVADILEAHTPGA 607 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P+ + A + A+ L+ ++ LK+L KQM+ A NL FEEAA IRD+I+ L+ Sbjct: 608 PMKAREYARVAEQV-AEYGRLTPQQMAKRLKTLEKQMYQHAKNLEFEEAAAIRDQIRELQ 666 Query: 795 S 795 + Sbjct: 667 A 667 >gi|221214866|ref|ZP_03587835.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD1] gi|221165405|gb|EED97882.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD1] Length = 696 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/680 (55%), Positives = 492/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL +EG+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + I+ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGIK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|300692026|ref|YP_003753021.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition component [Ralstonia solanacearum PSI07] gi|299079086|emb|CBJ51748.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition component [Ralstonia solanacearum PSI07] Length = 696 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/674 (55%), Positives = 489/674 (72%), Gaps = 9/674 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI QL +GI Q LLGVTGSGKT+TMA V Sbjct: 12 DESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLFEGIGDGLSYQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+++IFP+ ++A R+ +F ++++ + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL KE +L+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL+EYGFRLPS +DNRPL+F E+ + VSATP +E ++ +VEQ+ Sbjct: 372 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILYAD IT S++ AI ET RRR KQ+ HN+ H I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGTAILYADRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + AQ+ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQVGKEIKRLEKQMLDHARNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPY 798 +RD + +LKS + Sbjct: 671 AVRDRLAKLKSQVF 684 >gi|207743642|ref|YP_002260034.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b) [Ralstonia solanacearum IPO1609] gi|206595041|emb|CAQ61968.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b) [Ralstonia solanacearum IPO1609] Length = 696 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/674 (55%), Positives = 487/674 (72%), Gaps = 9/674 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI QLL+GI Q LLGVTGSGKT+TMA V Sbjct: 12 DESKFVAFEGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A R+ +F ++I+ + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEIDSLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A+ IK EL+ RL KE +L+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL+EYGFRLPS +DNRPL+F E+ + VSATP +E ++ +VEQ+ Sbjct: 372 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILY D IT S++ AI ET RRR KQ+ HN+ H I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGTAILYGDRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + AQ+ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPY 798 +RD++ +LKS + Sbjct: 671 AVRDQLAKLKSQVF 684 >gi|113970398|ref|YP_734191.1| excinuclease ABC subunit B [Shewanella sp. MR-4] gi|113885082|gb|ABI39134.1| Excinuclease ABC subunit B [Shewanella sp. MR-4] Length = 673 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/667 (55%), Positives = 486/667 (72%), Gaps = 14/667 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD++ Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ + RGTFR G+ I+IFP+ + RV +F ++IE +SEF PLTGQ ++ + Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A + IK+EL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +ELE+ G IVEQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ E+ R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT+S+ A+ ET RRREKQ +N +H I P+ V ++I +V+D + Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMD---V 600 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787 +D + L+ +++ K K + + L KQMH A NL FE+AA +R Sbjct: 601 DDGRESEKGYRQSSLNKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR 660 Query: 788 DEIKRLK 794 DE+KRL+ Sbjct: 661 DEVKRLR 667 >gi|90417042|ref|ZP_01224970.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2207] gi|90331058|gb|EAS46314.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2207] Length = 670 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/658 (55%), Positives = 483/658 (73%), Gaps = 9/658 (1%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +DY P+GDQP AI L++G+ + Q LLGVTGSGKTFT+AKV+EA+QRP IVMA NK Sbjct: 8 SDYSPAGDQPEAIKGLVQGLQNGLAAQTLLGVTGSGKTFTVAKVMEAVQRPTIVMAHNKT 67 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++++N I++MR SAT+ Sbjct: 68 LAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNSHIEQMRLSATK 127 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +L+ER D IV+++VS IYG+G +SY +M++ L G+ ++Q+++L L + QYKR DI Sbjct: 128 ALMERRDVIVIATVSAIYGLGDPKSYMKMLLHLSRGEKIDQRDILRRLAELQYKRNDIDF 187 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 R ++RV GD I+++P+ + A R+ +F +++E ++ F PLTG+ +R V IY SH Sbjct: 188 DRSSYRVRGDVIDVYPADSDYEALRIELFDDEVENLTLFDPLTGEVLRKVPRYTIYPKSH 247 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVTPR T+ A I EL RL +L +L+EAQRL +R+ YD EM+ G C IEN Sbjct: 248 YVTPRHTVVEAADKIMLELDERLTQLRSVDKLVEAQRLGERVRYDSEMMRELGYCNGIEN 307 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYL+GR PG+PPPTLF+Y+P+D+LL +DESHVT+PQI GMY+GD RK TL EYGFRL Sbjct: 308 YSRYLSGRPPGDPPPTLFDYLPDDALLVIDESHVTVPQIGGMYKGDRSRKETLVEYGFRL 367 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PS +DNRPLRF+EW L P I VSATP +E +G +VEQ++RPTGL+DP +E+R A Sbjct: 368 PSALDNRPLRFDEWEGLAPQMIFVSATPSKYEAAN-EGQVVEQVVRPTGLLDPEIEVRPA 426 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 QV+DV EI A RIL+TVLTKRMAEDLT+YL E ++RVRY+HS++ T+ER+EI Sbjct: 427 LNQVDDVLSEIKRCAAANERILITVLTKRMAEDLTDYLAEHSVRVRYLHSDIDTVERVEI 486 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRDLRLG+FDVLVGINLLREGLD+PE LVAI DADKEGFLRS TSLIQTIGR+AR+V Sbjct: 487 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDTSLIQTIGRSARHVRG 546 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 K ILYAD IT S++ AIDET RRR KQ+EHN+ + + P + + + ++++ T Sbjct: 547 KAILYADKITGSMRRAIDETERRRAKQVEHNRLNGLTPVGITKSVTDIMEGAYAGQGKTK 606 Query: 745 NISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ L ++ + LK L ++M+ A NL FEEAA++RDEI +L+ Sbjct: 607 RGKKVAEGLGRYVLDEPPVAIRDIAKELKRLDEKMYQHARNLEFEEAAQVRDEIGKLR 664 >gi|167854602|ref|ZP_02477383.1| hypothetical protein HPS_02459 [Haemophilus parasuis 29755] gi|167854357|gb|EDS25590.1| hypothetical protein HPS_02459 [Haemophilus parasuis 29755] Length = 671 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/660 (56%), Positives = 488/660 (73%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L++G++ Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 8 FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ + VA RV +F ++IE +S F PLTG + V IY Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDGVALRVELFDDEIENLSLFDPLTGHNLGRVPRYTIY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 248 PKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD RK TL +Y Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ +I +Q++RPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+E Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDK 606 Query: 738 LEDAATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + S D Q S+K+ + LK L +QM A +L FE+AA +RD+I +LK+ Sbjct: 607 PKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIHQLKA 666 >gi|257485513|ref|ZP_05639554.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624159|ref|ZP_06457113.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648591|ref|ZP_06479934.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str. 2250] gi|330869809|gb|EGH04518.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987408|gb|EGH85511.1| excinuclease ABC subunit B [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010689|gb|EGH90745.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 671 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A RV +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQL N +H I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IGKLR 665 >gi|54293037|ref|YP_125452.1| excinuclease ABC subunit B [Legionella pneumophila str. Lens] gi|81822471|sp|Q5X0E6|UVRB_LEGPL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|53752869|emb|CAH14304.1| excinuclease ABC subunit B [Legionella pneumophila str. Lens] Length = 663 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/655 (55%), Positives = 478/655 (72%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RP ++M Sbjct: 4 LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ +Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + RG FRV GD I+IFP+ E A R+ +F ++++ I+ F PLTG+ ++ + + I Sbjct: 184 TNLSLERGQFRVNGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + ++ +K EL+ RL EL + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+ R GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD RK TL Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR +TQV+D+ EI QG RIL+T LTKRMAEDLTEYL E I+VRY+HS+V T+ Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV + ILYAD IT S+Q A+ ET RRREKQ N KH I P+ + + + ++++ + Sbjct: 543 RNVKGRAILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + S ++ + +L KQM+ A N+ FE AA+IRDE LK Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657 >gi|257093910|ref|YP_003167551.1| excinuclease ABC subunit B [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046434|gb|ACV35622.1| excinuclease ABC, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 692 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/668 (55%), Positives = 481/668 (72%), Gaps = 8/668 (1%) Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 ITF F++ + P+GDQPAAIA L++G+ Q LLGVTGSGKTFTMA VI Sbjct: 14 ITFEGSPFRLAQPFLPAGDQPAAIAALVEGLADGLSFQTLLGVTGSGKTFTMANVIARTG 73 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPA+V+APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP D YIEK+SSINE Sbjct: 74 RPALVLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDSSINE 133 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 I++MR SAT+SLLER DC++V++VSCIYGIG + Y +MI+ +++GD + Q+E++ L Sbjct: 134 HIEQMRLSATKSLLERRDCVIVATVSCIYGIGDRDEYHRMILTMRVGDRIGQREVIKRLA 193 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 + QY+R + RGTFRV GD I++FP+ + A R+S+F ++IE + F PLTG Sbjct: 194 EMQYERNETDFRRGTFRVRGDVIDVFPAEHAEQAIRISLFDDEIEGLQLFDPLTGHLQNR 253 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 + I+ +SHYVTPR T+ A++ IK+EL R+ EGRL+EAQR+EQR +DLEML Sbjct: 254 LLRFTIFPSSHYVTPRETVLRAIEKIKQELAERIAAFNAEGRLVEAQRIEQRTRFDLEML 313 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 + G C+ IENYSR+++GR GEPPPTL +Y+P D+L+F+DESHV+IPQ+ GMY+GD R Sbjct: 314 DQIGFCKGIENYSRHISGRQAGEPPPTLIDYLPADALMFIDESHVSIPQVGGMYKGDRSR 373 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K L YGFRLPS +DNRPL+F E+ L TI +SATP +E QG +VEQ++RPTG Sbjct: 374 KENLVNYGFRLPSALDNRPLKFAEYEALLRQTIFLSATPADYETAH-QGQVVEQVVRPTG 432 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 LVDP + +R A TQ++D+ EI L R+L+T LTKRMAEDLT+YL E +RVRY+H Sbjct: 433 LVDPVLIVRPASTQIDDLLSEIRLRVSLAERVLVTTLTKRMAEDLTDYLGEHEVRVRYLH 492 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQ Sbjct: 493 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 552 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAAR+++ ILYAD +T S+ AI ET RRR KQL N+ H I V ++I ++I Sbjct: 553 TIGRAARHLHGTAILYADRVTGSMSRAIAETERRRLKQLAFNEAHGIVATGVSKRITDII 612 Query: 734 DPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D + A + QQ S +S+K+ LK L K M A NL FE+AA RDE+ Sbjct: 613 DGVYDAGNAQRELKAAQQQASYEAMSEKQLARELKRLEKSMLEHAKNLEFEKAAAARDEL 672 Query: 791 KRLKSSPY 798 R++ + Sbjct: 673 FRIRQQVF 680 >gi|165919102|ref|ZP_02219188.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 334] gi|165917171|gb|EDR35775.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 334] Length = 672 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/661 (54%), Positives = 488/661 (73%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L+ G+ Q LLGVTGSGKTFT+A IE +QRP +++ Sbjct: 5 FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR Sbjct: 65 PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++ ER+D I++++VS IYG+G +SY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYNRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R T+RV GD I+I+P+ E A RV +F +++E +S F PLTG+ +R V I +Y Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L + + IK ELK RL +LEK +L+E QRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ L P TI +SATPG +E +Q +VE ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A Q R+L+T LTKRMAEDLTEY E N+RVRY+HS++ T+E Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FD+LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ K ILYAD IT S++ A++E RRR Q +N+KH+I P+S+++ + E+I+ Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603 Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A +A+ ++++ K+ L+ L +QM+ A NL FEEAA +RD+I+ + Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663 Query: 794 K 794 + Sbjct: 664 R 664 >gi|254497351|ref|ZP_05110154.1| excinuclease ABC subunit B [Legionella drancourtii LLAP12] gi|254353404|gb|EET12136.1| excinuclease ABC subunit B [Legionella drancourtii LLAP12] Length = 672 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/650 (55%), Positives = 477/650 (73%), Gaps = 1/650 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +++ P+GDQP AIA L+ G+ S Q LLGVTGSGKTFT+A VI+AM+RP ++M Sbjct: 4 LFKIYSNFQPAGDQPTAIASLIDGLKSGLAKQTLLGVTGSGKTFTIAHVIQAMRRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR Sbjct: 64 APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+V++VS IYG+G +SY +M++ L G+ Q+++L L + QY R Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMVLHLSRGEHTGQRKILQRLAEMQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + RG FRV GD I+IFP+ E A R+ +F +++E I++F PLTG+ + + + I Sbjct: 184 TNMSLERGQFRVHGDVIDIFPADSEREAIRIELFDDEVENIAQFDPLTGEVAQRLPRVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYVTPR + + ++KEEL RL E + +L+EAQRLEQR +D+EM+ G C Sbjct: 244 FPKTHYVTPRERILETIDWVKEELHERLAEFNAQNKLVEAQRLEQRTYFDIEMMLELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+ R+ G+ PPTLF+Y+P ++LL +DESHVTIPQI MY+GD RK TL + Sbjct: 304 SGIENYSRYLSARSAGQAPPTLFDYLPPEALLVIDESHVTIPQIGAMYKGDRSRKETLVQ 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ P TI +SATPG +E E + EQ++RPTGLVDP V Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEKEHADN-VAEQVVRPTGLVDPEV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR RTQV+D+ E QQG R+L+T LTKRMAEDLT+YL E I+VRY+HS+V T+ Sbjct: 423 EIRPVRTQVDDLMSEARQVIQQGGRVLVTTLTKRMAEDLTDYLNEHGIKVRYLHSDVDTV 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 483 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVVLVAILDADKEGFLRSDRSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN + ILYAD +T S+Q A+DET+RRR+KQ N+ H I P+ + + + ++++ + Sbjct: 543 RNVNGRAILYADKVTGSMQRALDETSRRRDKQRAFNETHGITPKGINKSVADIMEAAYIG 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + S ++ H+ +L KQM++ A N+ FE AA++RD+ Sbjct: 603 KRKDVVAEPIPEYAHWSTQELVKHINTLEKQMYMHAKNMEFEAAAKVRDQ 652 >gi|153207959|ref|ZP_01946512.1| excinuclease ABC, B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212218858|ref|YP_002305644.1| excinuclease ABC subunit B [Coxiella burnetii CbuK_Q154] gi|226698332|sp|B6J8A0|UVRB_COXB1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|120576260|gb|EAX32884.1| excinuclease ABC, B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212013120|gb|ACJ20500.1| excinuclease ABC subunit B [Coxiella burnetii CbuK_Q154] Length = 672 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/661 (54%), Positives = 488/661 (73%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L+ G+ Q LLGVTGSGKTFT+A IE +QRP +++ Sbjct: 5 FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR Sbjct: 65 PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++ ER+D I++++VS IYG+G +SY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R T+RV GD I+I+P+ E A RV +F +++E +S F PLTG+ +R V I +Y Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L + + IK ELK RL +LEK +L+E QRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ L P TI +SATPG +E +Q +VE ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A Q R+L+T LTKRMAEDLTEY E N+RVRY+HS++ T+E Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FD+LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ K ILYAD IT S++ A++E RRR Q +N+KH+I P+S+++ + E+I+ Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603 Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A +A+ ++++ K+ L+ L +QM+ A NL FEEAA +RD+I+ + Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663 Query: 794 K 794 + Sbjct: 664 R 664 >gi|117920610|ref|YP_869802.1| excinuclease ABC subunit B [Shewanella sp. ANA-3] gi|117612942|gb|ABK48396.1| Excinuclease ABC subunit B [Shewanella sp. ANA-3] Length = 673 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/667 (55%), Positives = 485/667 (72%), Gaps = 14/667 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ + P+GDQP AIA+L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+ Sbjct: 4 SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD++ Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ + RGTFR G+ I+IFP+ + RV +F ++IE +SEF PLTGQ ++ + Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A + IK+EL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P TI VSATP +EL++ G IVEQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ E+ R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT+S+ A+ ET RRREKQ +N +H I P+ V ++I +V+D + Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMD---V 600 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787 +D T L +++ K K + + L KQMH A NL FE+AA +R Sbjct: 601 DDGRDTEKGYSPSSLGKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR 660 Query: 788 DEIKRLK 794 DE+KRL+ Sbjct: 661 DEVKRLR 667 >gi|109899270|ref|YP_662525.1| excinuclease ABC subunit B [Pseudoalteromonas atlantica T6c] gi|109701551|gb|ABG41471.1| Excinuclease ABC subunit B [Pseudoalteromonas atlantica T6c] Length = 669 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/660 (55%), Positives = 476/660 (72%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI L+ G+ S Q LLGVTGSGKTFTMA VI +QRP +++A Sbjct: 5 FQLTSNYSPAGDQPKAIQALVDGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++VSSVS IYG+G +SY +M++ + GD + Q+++L L + QY R Sbjct: 125 SATKALMERRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD I+IFP+ E A RV +F ++E IS F PLTG + V I+ Sbjct: 185 DVAFERGTFRVRGDVIDIFPADSEREAVRVELFDEEVERISIFDPLTGAVEKTVARATIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+++IK+ELK R +L +L+E QR+ QR +D+EM++ G C Sbjct: 245 PKTHYVTPREKILDAVEHIKDELKERKAQLLSVNKLIEEQRISQRCQFDMEMMQELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTL +Y P D L+F+DESHVT+ QI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + P TI VSATPG +EL + IVEQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKTPDDIVEQVVRPTGLIDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI R+L+T LTKRM+EDL+EYL E N++ RY+HS++ T+E Sbjct: 425 IRPVGTQVDDLLSEIEKCVALNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N + ILYAD IT S+Q A+DET RRREKQ EHNKKHNI P + + I +++D + E Sbjct: 545 HINGRAILYADRITGSMQRAMDETDRRREKQREHNKKHNIVPTQLNKPITDIMD--VGEG 602 Query: 741 AATTNISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + S K G + + L K+M A +L FE+AA +RDE++ L+ Sbjct: 603 SGQGKVMLRKVAESGKKYNGMSAPELMKSIAELEKKMFQMAKDLEFEQAASLRDEVETLR 662 >gi|154706129|ref|YP_001424888.1| excinuclease ABC subunit B [Coxiella burnetii Dugway 5J108-111] gi|189037962|sp|A9KCU2|UVRB_COXBN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|154355415|gb|ABS76877.1| excinuclease ABC subunit B [Coxiella burnetii Dugway 5J108-111] Length = 672 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/661 (54%), Positives = 488/661 (73%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L+ G+ Q LLGVTGSGKTFT+A IE +QRP +++ Sbjct: 5 FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR Sbjct: 65 PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++ ER+D I++++VS IYG+G +SY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R T+RV GD I+I+P+ E A RV +F +++E +S F PLTG+ +R V I +Y Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L + + IK ELK RL +LEK +L+E QRLEQR +D+EM+ G C Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ L P TI +SATPG +E +Q +VE ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A Q R+L+T LTKRMAEDLTEY E N+RVRY+HS++ T+E Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ K ILYAD IT S++ A++E RRR Q +N+KH+I P+S+++ + E+I+ Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603 Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A +++ ++++ K+ L+ L +QM+ A NL FEEAA +RD+I+ + Sbjct: 604 ERGRFVNQAQLIAEEESKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663 Query: 794 K 794 + Sbjct: 664 R 664 >gi|170768976|ref|ZP_02903429.1| excinuclease ABC, B subunit [Escherichia albertii TW07627] gi|170122048|gb|EDS90979.1| excinuclease ABC, B subunit [Escherichia albertii TW07627] Length = 673 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/664 (57%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G +SY +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +DVA RV +F ++E +S F PLTGQ I + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDVALRVELFDEEVERLSLFDPLTGQIISTIARYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELADRRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L + Sbjct: 545 NVNGKAILYGDKITPSMAKAISETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQS 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L QM A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRAIVEPDNVPMDMSPKALQQKIHELEAQMMKHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|293390328|ref|ZP_06634662.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950862|gb|EFE00981.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans D7S-1] Length = 680 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/668 (55%), Positives = 482/668 (72%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L + + Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 10 FILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G + Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQQGAIINQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F +IE +S F PLTG V +Y Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSFGTVPRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ RN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSDRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ G I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLDPQIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD ITKS++ AI ET RRREKQ ++N+ I PQ++ +K+ E++D + Sbjct: 550 NLHGKAILYADNITKSMEKAITETNRRREKQAKYNEAQGIMPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQLSL------------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ S K+ + +K L +QM+ A +L FE+AA RD Sbjct: 607 GANQKAKANKQRGKTVAEPTALYTTLKSPKEYQQQIKKLEQQMYKFAQDLEFEKAAATRD 666 Query: 789 EIKRLKSS 796 ++++L+ S Sbjct: 667 QLQQLRES 674 >gi|238920712|ref|YP_002934227.1| excinuclease ABC subunit B [Edwardsiella ictaluri 93-146] gi|259710325|sp|C5BEJ2|UVRB_EDWI9 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238870281|gb|ACR69992.1| excinuclease ABC subunit B, putative [Edwardsiella ictaluri 93-146] Length = 672 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/664 (56%), Positives = 480/664 (72%), Gaps = 13/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +VMA Sbjct: 5 FKLHSAFQPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLSELQYVRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F +++E +S F PLTGQ +R V +Y Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEADDEALRVELFDDEVERLSLFDPLTGQLLRTVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ I+ EL MR L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEAIRAELAMRRQSLLASNKLLEEQRLAQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++EL++ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELDKSGGEVIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EINL A G R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEINLRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FD LVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S+ AI ET RRRE+Q N H I PQ++ +K+ +++ L D Sbjct: 545 NLNGKAILYADKITPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQ---LGD 601 Query: 741 AATTNISIDAQQL----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + + A+ +LS K+ + ++ L QM+ A NL FE+AA +RDEI Sbjct: 602 GPVRSRTKGARGQRAAEPHPDYHTLSAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEI 661 Query: 791 KRLK 794 L+ Sbjct: 662 HILR 665 >gi|261868251|ref|YP_003256173.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413583|gb|ACX82954.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans D11S-1] Length = 680 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/668 (55%), Positives = 482/668 (72%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L + + Q LLGVTGSGKTFT+A VI + RPA+V+A Sbjct: 10 FILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G + Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQQGAIINQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F +IE +S F PLTG V +Y Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSFGTVPRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ RN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSDRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ G I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLDPQIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD ITKS++ AI ET RRREKQ ++N+ I PQ++ +K+ E++D + Sbjct: 550 NLHGKAILYADNITKSMEKAITETNRRREKQAKYNEAQGIVPQALNKKVGELLD---IGQ 606 Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + Q+ S K+ + +K L +QM+ A +L FE+AA RD Sbjct: 607 GANQKAKANKQRGKTVAEPTALYTTPKSPKEYQQQIKKLEQQMYKFAQDLEFEKAAATRD 666 Query: 789 EIKRLKSS 796 ++++L+ S Sbjct: 667 QLQQLRES 674 >gi|237653104|ref|YP_002889418.1| excinuclease ABC subunit B [Thauera sp. MZ1T] gi|237624351|gb|ACR01041.1| excinuclease ABC, B subunit [Thauera sp. MZ1T] Length = 695 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/662 (55%), Positives = 481/662 (72%), Gaps = 5/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI L +G+ Q LLGVTGSGKT+TMA VI M RPA+V+A Sbjct: 27 FRLHQPFPPAGDQPEAIRLLCEGVEDGLMYQTLLGVTGSGKTYTMANVIARMGRPALVLA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EFK F P NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 87 PNKTLAAQLYAEFKEFLPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D ++V++VSCIYGIG Y MI+ L+ G+ + ++L+ LV QY R Sbjct: 147 SATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERMAHRDLIQRLVAMQYTRA 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD I++FP+ ++A R+ MF ++IE ++ F PLTG + +Y Sbjct: 207 DIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEIEHLTLFDPLTGHLRHKLARFTVY 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IKEELK R+ ++EG+L+EAQR+EQR +DLEML G C+ Sbjct: 267 PSSHYVTPRATVLQAIEAIKEELKERVAFFQREGKLVEAQRIEQRTRFDLEMLNEMGFCK 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTL +Y+P+D+L+F+DESHV I Q+ GMY+GD RK L Y Sbjct: 327 GIENYSRHLSGRGPGEPPPTLIDYLPQDALMFIDESHVAIGQVGGMYKGDRSRKENLVGY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L P T+ VSATP +E E+ QG +VEQ++RPTGL+DP VE Sbjct: 387 GFRLPSALDNRPLKFDEFERLMPQTVFVSATPAKYE-EEHQGQVVEQVVRPTGLIDPMVE 445 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI R+L+TVLTKRMAEDLT+YL + IRVRY+HS++ T+E Sbjct: 446 VRPAMTQVDDLLGEIKKRLAVNERVLVTVLTKRMAEDLTDYLADNGIRVRYLHSDIDTVE 505 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 506 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSARSLIQTIGRAAR 565 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +++ ILYAD IT S++ AI ET RRR KQ+ N+ + I P+SV ++I ++ID + D Sbjct: 566 HLHGTAILYADRITDSMKAAIGETERRRNKQIAFNEANGIVPKSVTKRIKDIIDGVYDSD 625 Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + + A + S + +K +K L K+M A NL FE+AA RDE+ +L+ Sbjct: 626 GAKRDAARVADKGSDYAVMDEKALARAIKRLEKEMQEHARNLEFEKAAAARDELFKLRER 685 Query: 797 PY 798 + Sbjct: 686 AF 687 >gi|83745732|ref|ZP_00942789.1| Excinuclease ABC subunit B [Ralstonia solanacearum UW551] gi|83727422|gb|EAP74543.1| Excinuclease ABC subunit B [Ralstonia solanacearum UW551] Length = 786 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/671 (55%), Positives = 486/671 (72%), Gaps = 9/671 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI QLL+GI Q LLGVTGSGKT+TMA V Sbjct: 102 DESKFVAFEGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANV 161 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 162 IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 221 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 222 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDV 281 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A R+ +F ++I+ + F PLTG Sbjct: 282 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEIDSLQLFDPLTG 341 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A+ IK EL+ RL KE +L+EAQRLEQR + Sbjct: 342 RVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRF 401 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY Sbjct: 402 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYN 461 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL+EYGFRLPS +DNRPL+F E+ + VSATP +E ++ +VEQ+ Sbjct: 462 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 521 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 522 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 581 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 582 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 641 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILY D IT S++ AI ET RRR KQ+ HN+ H I P+ V ++ Sbjct: 642 RSLIQTIGRAARNVNGTAILYGDRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 701 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + AQ+ + +S+K+ +K L KQM A NL FE+AA Sbjct: 702 IKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAA 760 Query: 785 RIRDEIKRLKS 795 +RD++ +LKS Sbjct: 761 AVRDQLAKLKS 771 >gi|115352299|ref|YP_774138.1| excinuclease ABC subunit B [Burkholderia ambifaria AMMD] gi|115282287|gb|ABI87804.1| Excinuclease ABC subunit B [Burkholderia ambifaria AMMD] Length = 696 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRAGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R D RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYSRNDQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|253998973|ref|YP_003051036.1| excinuclease ABC subunit B [Methylovorus sp. SIP3-4] gi|253985652|gb|ACT50509.1| excinuclease ABC, B subunit [Methylovorus sp. SIP3-4] Length = 678 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/666 (55%), Positives = 481/666 (72%), Gaps = 6/666 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ + P+GDQPAAI +++ GI + Q LLGVTGSGKT+TMA VI RPA+VMA Sbjct: 10 YQLHQPFPPAGDQPAAIEKIITGIEQGMQYQTLLGVTGSGKTYTMANVIARTGRPAMVMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 70 PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V++VS IYGIG Y M++ + G + Q+++++ L+ QY R Sbjct: 130 SATKSLLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHQGMKISQRDIVNKLITMQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +++FPS + A R+S+F ++IE I F PLTGQ + +I+ Sbjct: 190 DFDFSRGAFRVRGDVVDVFPSENSETAVRISLFDDEIETIQLFDPLTGQVFNKIHNFRIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVT R AM+ IK+EL+ R+ K +L+EAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTAREATVRAMETIKQELRDRVDFFIKNNKLVEAQRIEQRTRFDLEMLNEIGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR+PG+ PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD RK L +Y Sbjct: 310 GIENYSRHLTGRSPGDAPPTLIDYLPANALMIIDESHVTIPQIGGMYKGDRARKENLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + T+ VSATP +E Q +VEQ+ RPTGL+DP + Sbjct: 370 GFRLPSALDNRPLRFEEFERIMRQTVFVSATPADYEATH-QEQVVEQVARPTGLIDPEIT 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A TQV+D+ EI L G R+L T LTKRMAEDLT+YL E ++VRY+HS++ T+E Sbjct: 429 VKPADTQVDDLLSEIKLRVAVGERVLATTLTKRMAEDLTDYLSEHGVKVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVI YA+ IT+S++LA+DET RRR KQ+ N+ H I P+ V ++I ++ID + +D Sbjct: 549 NLNGKVIFYANNITRSMKLAMDETQRRRTKQMAFNEAHGIVPKGVTKRIKDIIDGVYDKD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 A Q S LS+K+ +K L K MH +A NL FE+AA RD++K+LK+ Sbjct: 609 DAKRERQAAQDQASYEALSEKQIIKEMKRLEKSMHDSAQNLEFEKAAEFRDQLKKLKAK- 667 Query: 798 YFQGLD 803 F G D Sbjct: 668 -FYGTD 672 >gi|160872333|ref|ZP_02062465.1| excinuclease ABC, B subunit [Rickettsiella grylli] gi|159121132|gb|EDP46470.1| excinuclease ABC, B subunit [Rickettsiella grylli] Length = 669 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/674 (54%), Positives = 494/674 (73%), Gaps = 20/674 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+KG+ S Q LLGVTGSGKTF++A VI+ +QRP +++A Sbjct: 5 FELISNFKPAGDQPTAIKALVKGLQSGLAYQTLLGVTGSGKTFSIAHVIQKIQRPVLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E ++FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+++INE I++MR Sbjct: 65 PNKTLAAQLYGEMRSFFPHNAVEYFVSYYDYYQPEAYVPTTDTYIEKDAAINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V++VS IYG+G +Y M++ ++ GD + Q+ +L L + QY R Sbjct: 125 SATKSLLERRDVIIVATVSAIYGLGDPNTYVDMMLHIRRGDEICQRFILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R T+RV GD I+++P+ + A R+ + + IE +S F PLTG+ R V + IY Sbjct: 185 DTDFRRATYRVRGDVIDVYPAESAEEAVRIELLDDTIEHLSFFDPLTGELYRRVPRLTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + +A++ I+ ELK RL +L+ +L+E QRLEQR +D+EML G C Sbjct: 245 PKTHYVTPRDKILSAVESIQRELKERLAQLQSAHKLIEFQRLEQRTRFDIEMLLELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ G+PPPTL +Y+P+D+LL +DESHVT+PQ+S MYRGD RK TL Y Sbjct: 305 GIENYSRYLSGRDAGQPPPTLMDYLPKDALLVIDESHVTVPQLSAMYRGDRSRKETLVAY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E++ T+ +SATP ++ELE+ G IVEQ+IRPTGLVDP +E Sbjct: 365 GFRLPSALDNRPLQFQEFSDFAFQTVYISATPSTYELERS-GAIVEQVIRPTGLVDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ + R+L+T LTKR++EDLTEYL E N++VRY+HS++ T+E Sbjct: 424 VRPQATQVDDLLSEIHYCVAKNERVLVTTLTKRLSEDLTEYLAEHNVKVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RVEIIRDLRLGQFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILYAD IT S+Q AIDET RRR KQL NKKH+I P+ + + + +++ + Sbjct: 544 HIQGRAILYADKITGSMQKAIDETERRRNKQLAFNKKHHITPKGIAKAVHDIL------E 597 Query: 741 AATTNISIDAQQL-----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A +++S Q++ +LS ++ H+K L ++M A NL FEEAA RD+ Sbjct: 598 GAKSDMSTHKQRVLNVAEARAYYATLSPEECAKHIKQLEREMFHYAKNLQFEEAAETRDK 657 Query: 790 IKRLKSSPYFQGLD 803 +K+LK G+D Sbjct: 658 LKKLKEK--IMGID 669 >gi|313201077|ref|YP_004039735.1| excinuclease ABC subunit B [Methylovorus sp. MP688] gi|312440393|gb|ADQ84499.1| excinuclease ABC, B subunit [Methylovorus sp. MP688] Length = 681 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/666 (55%), Positives = 481/666 (72%), Gaps = 6/666 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ + P+GDQPAAI +L+ GI + Q LLGVTGSGKT+TMA VI RPA+VMA Sbjct: 13 YQLHQPFPPAGDQPAAIEKLITGIEQGMQYQTLLGVTGSGKTYTMANVIARTGRPAMVMA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 73 PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V++VS IYGIG Y M++ + G + Q+++++ L+ QY R Sbjct: 133 SATKSLLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHQGMKISQRDIVNKLITMQYDRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +++FPS + A R+S+F ++IE I F PLTGQ + +I+ Sbjct: 193 DFDFSRGAFRVRGDVVDVFPSENSETAVRISLFDDEIETIQLFDPLTGQVFNKIHNFRIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVT R AM+ IK+EL+ R+ K +L+EAQR+EQR +DLEML G C+ Sbjct: 253 PSSHYVTAREATVRAMETIKQELRDRVDFFIKNNKLVEAQRIEQRTRFDLEMLNEIGFCK 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR+PG+ PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD RK L +Y Sbjct: 313 GIENYSRHLTGRSPGDAPPTLIDYLPANALMIIDESHVTIPQIGGMYKGDRARKENLVDY 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + T+ VSATP +E Q +VEQ+ RPTGL+DP + Sbjct: 373 GFRLPSALDNRPLRFEEFERIMRQTVFVSATPADYEATH-QEQVVEQVARPTGLIDPEIT 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A TQV+D+ EI L G R+L T LTKRMAEDLT+YL E ++VRY+HS++ T+E Sbjct: 432 VKPADTQVDDLLSEIKLRVAVGERVLATTLTKRMAEDLTDYLSEHGVKVRYLHSDIDTVE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 492 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVI YA+ IT+S++LA+DET RRR KQ+ N+ H I P+ V ++I ++ID + +D Sbjct: 552 NLNGKVIFYANNITRSMKLAMDETQRRRIKQMAFNEAHGIVPKGVTKRIKDIIDGVYDKD 611 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 A Q S LS+K+ +K L K MH +A NL FE+AA RD++K+LK+ Sbjct: 612 DAKRERQAAQDQASYEALSEKQIIKEMKRLEKSMHDSAQNLEFEKAAEFRDQLKKLKAK- 670 Query: 798 YFQGLD 803 F G D Sbjct: 671 -FYGTD 675 >gi|167623863|ref|YP_001674157.1| excinuclease ABC subunit B [Shewanella halifaxensis HAW-EB4] gi|167353885|gb|ABZ76498.1| excinuclease ABC, B subunit [Shewanella halifaxensis HAW-EB4] Length = 667 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/659 (55%), Positives = 482/659 (73%), Gaps = 4/659 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ Y P+GDQP AI +L+ G+ S Q LLGVTGSGKTFT+A VIE M RP I+ Sbjct: 4 SVFQLESMYKPAGDQPTAINKLVDGLESGVACQTLLGVTGSGKTFTIANVIEKMSRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G ++Y +M++ L+ G ++EQ+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I+IFP+ + A R+ +F ++IE +S F PLTG ++ + I Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPADSDKNAIRIELFDDEIERLSLFDPLTGHIVKRIARIT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y SHYVTPR ++ A + IKEEL+ R +L +L+E QR+ +R+ YDLEM+ G Sbjct: 244 VYPKSHYVTPRESILAATEEIKEELRERKKQLLDLNKLIEEQRITERVQYDLEMMTELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR G+ PPTL +Y+PED LL +DESHVT+PQI MY+GD RK L Sbjct: 304 CSGIENYSRYLSGRASGDGPPTLLDYLPEDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P +I VSATP ++E+E+ G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSAYEIEKSDGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVSTQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG FDVL+GINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILY D ITKS+ AI ET RRRE Q +HN + I P+ V +KI +V+D Sbjct: 544 ARNVNGKVILYGDRITKSMDKAITETNRRREMQHQHNLDNGIIPKGVIKKITDVMDVGDH 603 Query: 739 E--DAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E D+ I+ + ++K +H + L KQMH A NL FEEAA IRD++ RL+ Sbjct: 604 EYVDSERGVAEIEG-EYHVAKPADISHDIDRLEKQMHEHAKNLEFEEAAAIRDKVGRLR 661 >gi|37525442|ref|NP_928786.1| excinuclease ABC subunit B [Photorhabdus luminescens subsp. laumondii TTO1] gi|81834028|sp|Q7N6Q1|UVRB_PHOLL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|36784870|emb|CAE13784.1| exinuclease ABC subunit B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 669 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/658 (56%), Positives = 479/658 (72%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI QL +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSDFQPGGDQPEAIRQLQEGLEDGLAHQTLLGVTGSGKTFTVANVIANLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K+FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYSEMKDFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G +SY +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMMIDQRSILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F +++E +S F PLTGQ +V +Y Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVQYHVPRYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL+ R L G+LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIIQAMEAIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPLRFEE+ L P TI +SATPG +ELE+ G +VEQ++RPTGL+DP VE Sbjct: 365 GFRMPSALDNRPLRFEEFEALAPQTIYISATPGKYELEKSSGDVVEQVVRPTGLLDPEVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N++ K ILY D IT S+ AI ET RRR KQ N+KH I P+ + +KI +++ P Sbjct: 545 NLHGKAILYGDKITDSMAKAIGETERRRAKQQIFNEKHGIVPKGLNKKINDILQIGQPAG 604 Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A+ S LS K+ ++ ++ L +M+ A +L FE+AA +RD+++ L+ Sbjct: 605 GKRKGRGKAVATAETFSNLSAKELESKIRELEAKMYQHAQDLEFEQAASVRDQVQALR 662 >gi|329904108|ref|ZP_08273674.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480] gi|327548130|gb|EGF32846.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480] Length = 697 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 8/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK ITF FQ+ + P+GDQP AIA+L++GI Q LLGVTGSGKT+TMA V Sbjct: 12 DESKIITFPDSPFQLLQPFEPAGDQPTAIAKLVEGIEDGLSYQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I M RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARMGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR S T+SL+ER D I+V++VS IYGIG+ Y QMI+ L+ D V Q+++ Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVIIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L++ QY R +I RGTFRV GD+I+IFP+ ++A R+ MF ++IE I F PLTG Sbjct: 192 IARLIQMQYTRNEIDFGRGTFRVRGDTIDIFPAEHAELAVRLEMFDDEIESIQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y SHYVTPR T+ A++ IKEEL+ RL KE +L+E QR+EQR + Sbjct: 252 RVRQKIPRFTVYPGSHYVTPRATVLRAIETIKEELRDRLEFFRKENKLIEEQRIEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEM++ G + IENYSR+L+G GEPPPTL +Y+P D+L+F+DESHV + Q+SGMY Sbjct: 312 DLEMMQEIGFTKGIENYSRHLSGAKAGEPPPTLIDYLPPDALMFLDESHVLLGQLSGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPLRF+E+ T+ VSATP +E G +VEQ+ Sbjct: 372 GDRSRKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQTVFVSATPAEYEKTHA-GQVVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+D+ EI L Q R+L+T LTKRM+E LTE+L + ++ Sbjct: 431 VRPTGLVDPAIEVRPASTQVDDLMGEIQLRVAQNERVLVTTLTKRMSEQLTEFLSDNGVK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ Sbjct: 491 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARN+N K ILY D +T S++ AIDET RRR KQ+E N +NI P +K++ Sbjct: 551 RSLIQTIGRAARNLNGKAILYGDKVTDSMRRAIDETERRRNKQVEFNLANNITPIGIKKQ 610 Query: 729 IMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + A + + A+ S+S+K+ +K L K M A NL FE+AA+ Sbjct: 611 IKDLIDGVYSPQEAREELQVAQETAKYESMSEKQISKEIKRLEKLMLDHAKNLEFEKAAQ 670 Query: 786 IRDEIKRLKSSPYFQGLDDS 805 +RD+++ LK + G D+ Sbjct: 671 VRDQLRILKEQLFGAGGSDN 690 >gi|86157701|ref|YP_464486.1| excinuclease ABC subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|85774212|gb|ABC81049.1| Excinuclease ABC subunit B [Anaeromyxobacter dehalogenans 2CP-C] Length = 699 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/662 (54%), Positives = 477/662 (72%), Gaps = 17/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q++Y P+GDQP AIA+L G+ E+ Q+LLGVTGSGKTFT+A V+ ++RP +V+A Sbjct: 3 FEIQSEYQPTGDQPRAIAELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FP AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH Sbjct: 63 HNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL RND ++V+SVSCIYG+G+ E+Y ++ +L+ G + + SL+ QY+R Sbjct: 123 AATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+FP + ED A R+ FG+ +E I EF PL G + ++ + I+ Sbjct: 183 DLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAELDKVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV+ A+ ++EEL+ RL EL+ +L+EAQRLEQR +DLEMLE G C Sbjct: 243 PNSHYVSAPEVRARAISGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR G+PPP L +Y P+D LL +DESH T+PQI MYRGD RK TL E+ Sbjct: 303 GIENYSRWLSGRKAGDPPPCLLDYFPKDFLLVIDESHQTVPQIGSMYRGDRSRKETLVEF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L + VSATP ++ELEQ QG++VEQ+IRPTGLVDP +E Sbjct: 363 GFRLPSALDNRPLKFEEFQALVKQAVYVSATPAAYELEQAQGVVVEQLIRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +QV+D+ E+ A+ G R+L+T LTKRMAEDLTEY + +R RY+HS++ TLE Sbjct: 423 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IRDLR G+FDVL+GINLLREGLDIPE LVA+LDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSSVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD IT S++ AIDETTRRRE Q +N +H I P +VK I D Sbjct: 543 NVNGRVLLYADAITASMRQAIDETTRRREIQERYNAEHGITPTTVKRNI---------SD 593 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + D + L+ ++G + + +L ++M AA L FE+AA++RD ++ Sbjct: 594 LGMAVVEADYVTVPLAAEEGAEYRPEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQA 653 Query: 793 LK 794 LK Sbjct: 654 LK 655 >gi|311694263|gb|ADP97136.1| excinuclease ABC subunit B [marine bacterium HP15] Length = 686 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/673 (55%), Positives = 481/673 (71%), Gaps = 13/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI L+ GI S Q LLGVTGSGKTFT+A VI+ +QRP I+MA Sbjct: 15 FQVDSPFQPAGDQPKAIEGLMDGIQSGLAHQTLLGVTGSGKTFTIANVIQQVQRPTIIMA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 75 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY +M++ L GD ++Q+ +L L + QY R Sbjct: 135 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRYILRRLAELQYTRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R +RV GD I++FP+ E A R+ +F +++E +S F PLTG+ +R V + IY Sbjct: 195 DIEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A+++IK EL RL +L RL+EAQRLE+R YD+EM+ G C Sbjct: 255 PKSHYVTPRQTVLDAVEHIKVELDERLQQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P ++LL VDESHVTIPQI MY+GD RK TL EY Sbjct: 315 GIENYSRYLSGRRPGEAPPTLFDYLPPNALLVVDESHVTIPQIGAMYKGDRSRKETLVEY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + P I VSATP ++E E G +VEQ++RPTGL+DP +E Sbjct: 375 GFRLPSALDNRPMKFEEWERIAPQMIFVSATPSTYEAEHA-GQVVEQVVRPTGLLDPEIE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ + R+L+T LTKRMAEDLT++L E +I+VRY+HS++ T+E Sbjct: 434 VRPASTQVDDLLSEIHTRVKVKERVLVTTLTKRMAEDLTDFLMEHDIKVRYLHSDIDTVE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 494 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ K ILY D IT S+Q AIDET RRR KQ HN + I PQ + +KI ++++ Sbjct: 554 NVHGKAILYGDRITGSMQRAIDETERRRAKQEAHNLEQGITPQGLNKKIADIMEGAGGGG 613 Query: 741 AATTNISIDAQQLSLSKKKGKA------------HLKSLRKQMHLAADNLNFEEAARIRD 788 Q+ + ++ +A + L +M+ AA L+FE AAR+RD Sbjct: 614 RGRRKAERPGQKAAEEAEQYRAKAGNRSPEEVLKEVSRLEDEMYKAASELDFETAARLRD 673 Query: 789 EIKRLKSSPYFQG 801 +I LK + G Sbjct: 674 DIAELKEAALRTG 686 >gi|30248789|ref|NP_840859.1| excinuclease ABC subunit B [Nitrosomonas europaea ATCC 19718] gi|81838758|sp|Q82WA9|UVRB_NITEU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|30180384|emb|CAD84696.1| Helicase subunit of the DNA excision repair complex [Nitrosomonas europaea ATCC 19718] Length = 695 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/673 (55%), Positives = 488/673 (72%), Gaps = 8/673 (1%) Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 ITF +++ + P+GDQP AI L++GI S Q LLGVTGSGKTFT+A +I + Sbjct: 3 ITFPGSPYKLNQAFQPAGDQPEAIRILVEGIESGLSFQTLLGVTGSGKTFTIANMIARLG 62 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPAI+MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE Sbjct: 63 RPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE 122 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 I++MR SAT+SLLER D I+V++VSCIYGIG Y MI+ ++ + + Q++++ L Sbjct: 123 HIEQMRLSATKSLLEREDAIIVATVSCIYGIGDPVDYHGMILHVREHEKISQRDIIQRLT 182 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY+R + RGTFRV GD +++FP+ + A R+S+F +++E ++ F PLTGQ + Sbjct: 183 GMQYQRNEFEFARGTFRVRGDVLDVFPAENSETALRISLFDDEVESMTLFDPLTGQTRQK 242 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 V +Y +SHYVTPR T A++ IK EL RL + +L+EAQRLEQR +DLEML Sbjct: 243 VSRYTVYPSSHYVTPRSTTLRAIETIKTELTGRLNYFHENHKLVEAQRLEQRTRFDLEML 302 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C+ IENYSR+L+GR PG+PPPTL +Y+P+++L+ +DESHVT+PQI GMY+GD R Sbjct: 303 NELGFCKGIENYSRHLSGRQPGDPPPTLIDYLPDNALMIIDESHVTVPQIGGMYKGDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K L YGFRLPS +DNRPLRFEE+ L P TI VSATP +E+++ G I EQ++RPTG Sbjct: 363 KENLVAYGFRLPSALDNRPLRFEEFEKLMPQTIFVSATPADYEIQRS-GQIAEQVVRPTG 421 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 LVDP + IR TQV+D+ E++L A Q R+L+T LTKRMAEDLT+Y + IRVRY+H Sbjct: 422 LVDPVIIIRPVTTQVDDLMSEVSLRAAQNERVLVTTLTKRMAEDLTDYFSDHGIRVRYLH 481 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQ Sbjct: 482 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQ 541 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAAR+VN VILYAD IT S++ AIDET RRR KQ N+++NI P+ V ++I ++I Sbjct: 542 TMGRAARHVNGTVILYADKITNSMRRAIDETERRRNKQKLFNQQNNITPRGVNKRIKDLI 601 Query: 734 DPILLEDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D + + A + I A+ ++ + + ++ L K M AA N+ FE+AA+ RDEI Sbjct: 602 DGVYDSENAAEHRKVAQIQARYAAMDEAQLAKEIQRLEKSMLEAARNMEFEQAAQYRDEI 661 Query: 791 KRLKSSPYFQGLD 803 K L+S + +D Sbjct: 662 KNLRSKLFIGIID 674 >gi|17545730|ref|NP_519132.1| excinuclease ABC subunit B [Ralstonia solanacearum GMI1000] gi|21542280|sp|Q8Y0N2|UVRB_RALSO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|17428024|emb|CAD14713.1| probable uvrabc system protein b (uvrb protein) (excinuclease abc subunit b) [Ralstonia solanacearum GMI1000] Length = 696 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/673 (55%), Positives = 491/673 (72%), Gaps = 7/673 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI QL++GI Q LLGVTGSGKT+TMA V Sbjct: 12 DESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+++IFP+ ++A R+ +F ++++ + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A+ IK EL+ RL +E +L+EAQRLEQR + Sbjct: 252 RVRQKILRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL+ YGFRLPS +DNRPL+F E+ + VSATP +E ++ +VEQ+ Sbjct: 372 GDRARKETLSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSENGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILY D IT+S++ AI ET RRR KQ+ HN+ H I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKR 611 Query: 729 IMEVIDPIL-LEDA-ATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + ++DA A + DA + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNVDDARAELKAAQDAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAA 671 Query: 786 IRDEIKRLKSSPY 798 +RD++ +LKS + Sbjct: 672 VRDQLAKLKSQVF 684 >gi|42520676|ref|NP_966591.1| excinuclease ABC subunit B [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410416|gb|AAS14525.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 635 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/647 (56%), Positives = 470/647 (72%), Gaps = 17/647 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI L+ G++S ++ Q+LLGVTGSGKTFTMA VI RPA++MA Sbjct: 3 FQITTHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+ Sbjct: 63 HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SLLER D IVV+SVSCIYG+GS ESY MI+ L +G+ + + LS+L QYKR Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++IFPSH E+ AWR+S+FG++IEEISE +TG + V I I+ Sbjct: 183 DARFERGYFRVRGDIVDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NS+Y+TPR L A++ +K+EL RL + +++EA+RLEQR +D+EM+ TTG C+ Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G G+PPPTLFEY+P+D +LFVDESHVT+PQ+ MY G+ RK L +Y Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEEW +RP T+ +SATPG +EL + + +EQ+IRPTGL DP Sbjct: 363 GFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLADPICI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +Q++DV E + +G +L+T LTK+MAE+L EY+ E N+RV Y+HS++ LE Sbjct: 423 VKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSEMNMRVSYLHSDIAALE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII LR + DVLVG+NLLREGLDIPECGLVAILDADK+GFLRS+TSLIQTIGRAAR Sbjct: 483 RIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKQGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD IT S+ A+ ET RRR+KQ EHN HNI P++ +I P Sbjct: 543 NAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIVPKT-------IIKP----- 590 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 IS Q+ ++++ K + LRKQM A+NL FEEAARI+ Sbjct: 591 -----ISNTLQERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAARIK 632 >gi|163802842|ref|ZP_02196731.1| excinuclease ABC subunit B [Vibrio sp. AND4] gi|159173382|gb|EDP58205.1| excinuclease ABC subunit B [Vibrio sp. AND4] Length = 676 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/669 (54%), Positives = 492/669 (73%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ ++Y P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 YQLVSEYQPAGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY +M++ L GD ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHLCRGDVIDQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ E A R+ MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESEQDAVRIEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK+EL +R +L + +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILDAIENIKDELDVRKKQLLENNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P+D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP++FEE+ + P TI VSATPG++ELE+ G I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPMKFEEFEAVSPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+ Sbjct: 425 EVRPVTTQVDDLLSEIRIRSVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ + ILYAD+ITKS++ A+DET RRREKQ HN I PQ++K I ++++ L Sbjct: 545 RNIEGRAILYADSITKSMKKAMDETDRRREKQRAHNVAIGIEPQALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + + Q+ LSK ++ + + L M+ A +L FE AA+ Sbjct: 602 DITKSKRQRNTNQVPLSKVAEPSQAYEALSPQQLEREISRLEAAMYQHAQDLEFELAAQK 661 Query: 787 RDEIKRLKS 795 RD+I++L++ Sbjct: 662 RDQIEQLRT 670 >gi|172061170|ref|YP_001808822.1| excinuclease ABC subunit B [Burkholderia ambifaria MC40-6] gi|171993687|gb|ACB64606.1| excinuclease ABC, B subunit [Burkholderia ambifaria MC40-6] Length = 696 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|121587374|ref|ZP_01677144.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80] gi|121728166|ref|ZP_01681201.1| excinuclease ABC subunit B [Vibrio cholerae V52] gi|147673403|ref|YP_001216490.1| excinuclease ABC subunit B [Vibrio cholerae O395] gi|153215064|ref|ZP_01949781.1| excinuclease ABC subunit B [Vibrio cholerae 1587] gi|153819299|ref|ZP_01971966.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457] gi|153823436|ref|ZP_01976103.1| excinuclease ABC subunit B [Vibrio cholerae B33] gi|153829535|ref|ZP_01982202.1| excinuclease ABC subunit B [Vibrio cholerae 623-39] gi|227081192|ref|YP_002809743.1| excinuclease ABC subunit B [Vibrio cholerae M66-2] gi|229505383|ref|ZP_04394893.1| excinuclease ABC subunit B [Vibrio cholerae BX 330286] gi|229510947|ref|ZP_04400426.1| excinuclease ABC subunit B [Vibrio cholerae B33] gi|229518068|ref|ZP_04407512.1| excinuclease ABC subunit B [Vibrio cholerae RC9] gi|229529888|ref|ZP_04419278.1| excinuclease ABC subunit B [Vibrio cholerae 12129(1)] gi|229608402|ref|YP_002879050.1| excinuclease ABC subunit B [Vibrio cholerae MJ-1236] gi|254848149|ref|ZP_05237499.1| excinuclease ABC subunit B [Vibrio cholerae MO10] gi|255745443|ref|ZP_05419391.1| excinuclease ABC subunit B [Vibrio cholera CIRS 101] gi|262151305|ref|ZP_06028440.1| excinuclease ABC subunit B [Vibrio cholerae INDRE 91/1] gi|262167225|ref|ZP_06034937.1| excinuclease ABC subunit B [Vibrio cholerae RC27] gi|298498869|ref|ZP_07008676.1| excinuclease ABC, B subunit [Vibrio cholerae MAK 757] gi|121548377|gb|EAX58439.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80] gi|121629563|gb|EAX61986.1| excinuclease ABC subunit B [Vibrio cholerae V52] gi|124114927|gb|EAY33747.1| excinuclease ABC subunit B [Vibrio cholerae 1587] gi|126510159|gb|EAZ72753.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457] gi|126519045|gb|EAZ76268.1| excinuclease ABC subunit B [Vibrio cholerae B33] gi|146315286|gb|ABQ19825.1| excinuclease ABC subunit B [Vibrio cholerae O395] gi|148874995|gb|EDL73130.1| excinuclease ABC subunit B [Vibrio cholerae 623-39] gi|227009080|gb|ACP05292.1| excinuclease ABC subunit B [Vibrio cholerae M66-2] gi|227012835|gb|ACP09045.1| excinuclease ABC subunit B [Vibrio cholerae O395] gi|229333662|gb|EEN99148.1| excinuclease ABC subunit B [Vibrio cholerae 12129(1)] gi|229344783|gb|EEO09757.1| excinuclease ABC subunit B [Vibrio cholerae RC9] gi|229350912|gb|EEO15853.1| excinuclease ABC subunit B [Vibrio cholerae B33] gi|229357606|gb|EEO22523.1| excinuclease ABC subunit B [Vibrio cholerae BX 330286] gi|229371057|gb|ACQ61480.1| excinuclease ABC subunit B [Vibrio cholerae MJ-1236] gi|254843854|gb|EET22268.1| excinuclease ABC subunit B [Vibrio cholerae MO10] gi|255736518|gb|EET91915.1| excinuclease ABC subunit B [Vibrio cholera CIRS 101] gi|262024369|gb|EEY43058.1| excinuclease ABC subunit B [Vibrio cholerae RC27] gi|262030921|gb|EEY49550.1| excinuclease ABC subunit B [Vibrio cholerae INDRE 91/1] gi|297543202|gb|EFH79252.1| excinuclease ABC, B subunit [Vibrio cholerae MAK 757] gi|327483735|gb|AEA78142.1| Excinuclease ABC subunit B [Vibrio cholerae LMA3894-4] Length = 676 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++IE IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|299066976|emb|CBJ38171.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition component [Ralstonia solanacearum CMR15] Length = 696 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/673 (54%), Positives = 491/673 (72%), Gaps = 7/673 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI QL++GI Q LLGVTGSGKT+TMA V Sbjct: 12 DESKFVTFDGSPFQLYQPYLPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IAQSGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+++IFP+ ++A R+ +F ++++ + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A+ IK EL+ RL +E +L+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL+ YGFRLPS +DNRPL+F E+ + VSATP +E ++ +VEQ+ Sbjct: 372 GDRARKETLSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSENGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILY D IT+S++ AI ET RRR KQ+ HN+ H I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGTAILYGDRITESMKKAIGETERRRAKQMAHNEAHGITPRGVVKR 611 Query: 729 IMEVIDPIL-LEDA-ATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + ++DA A + DA + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNVDDARAELKAAQDAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAS 671 Query: 786 IRDEIKRLKSSPY 798 +RD++ +LKS + Sbjct: 672 VRDQLAKLKSQVF 684 >gi|319942812|ref|ZP_08017113.1| UvrABC system protein B [Sutterella wadsworthensis 3_1_45B] gi|319803579|gb|EFW00540.1| UvrABC system protein B [Sutterella wadsworthensis 3_1_45B] Length = 690 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/676 (54%), Positives = 491/676 (72%), Gaps = 3/676 (0%) Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 P + S+ ++ + F + + P+GDQPAAI L GI + Q LLGVTGSGKTF Sbjct: 11 VPPFAASMPTYAYPNSPFVLHAPFPPAGDQPAAIDALCAGIENGLMNQTLLGVTGSGKTF 70 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 TMA +I PAI+ APNK LAAQ YSE ++FFP NAVEYFVSYYD+YQPEAYVP D Sbjct: 71 TMANIIAREGVPAIIFAPNKTLAAQTYSEMRDFFPENAVEYFVSYYDFYQPEAYVPARDL 130 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 +IEK++++N+ I++MR +AT+S+LER D I+V++VS IYGIGS ESY+ M + L+ GD Sbjct: 131 FIEKDAAVNDHIEQMRLAATKSILERRDTIIVATVSAIYGIGSPESYTTMRMILRQGDRR 190 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 Q++L++ LVK QY R D+ RGTFRV GD+I+IFP+ + A RV +F ++++ +S F Sbjct: 191 SQRQLINQLVKIQYTRSDMEFNRGTFRVRGDTIDIFPAEHAETAVRVELFDDEVDTVSLF 250 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PLTG+ ++ V+ +Y SHYVTPR + A+ IK ELK+R EL K+ L+EAQRLE Sbjct: 251 DPLTGKVVQKVQRFVVYPASHYVTPRDEIVRAITSIKAELKVREAELLKDNLLVEAQRLE 310 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 QR +DLEML+ G C+ IENYSR+LTG PG PP L +Y+P D+L+F DESHV + Q+ Sbjct: 311 QRTNFDLEMLDQVGFCKGIENYSRHLTGLAPGAAPPCLIDYLPADALMFFDESHVMMGQL 370 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 GMYRGD RK TL YGFRLPS +DNRPLRF+E+ +I VSATP +ELE+CQG Sbjct: 371 GGMYRGDRARKETLVRYGFRLPSALDNRPLRFDEFEAKMRQSIFVSATPAEYELERCQGE 430 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 +VEQ++RPTGLVDP VE+R A TQV+D+ EI+ +QG R+L+T LTK+MAEDLT++L Sbjct: 431 VVEQVVRPTGLVDPAVEVRPATTQVDDLLSEISETVKQGERVLVTTLTKKMAEDLTDFLS 490 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 E ++VRY+HS++ T+ER+EIIRDLR GKFDVLVGINLLREGLDIPE LVAILDADKEG Sbjct: 491 EEGVKVRYLHSDIDTVERVEIIRDLRAGKFDVLVGINLLREGLDIPEVSLVAILDADKEG 550 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLRS SLIQTIGRAARN++ + ILY D +T S++ A++ET RRR+KQ + N++H I PQ Sbjct: 551 FLRSTRSLIQTIGRAARNLHGRAILYGDKMTDSMKAALNETNRRRQKQEDFNREHGIVPQ 610 Query: 724 SVKEKIMEVIDPILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 VK+ + E+ID + D A + + DA + + +K L+ L ++M A NL+FE+ Sbjct: 611 GVKKAVREIIDGVYRGPDVAPESSASDA--VPMDEKTLSKRLRELEEEMMSYAKNLDFEK 668 Query: 783 AARIRDEIKRLKSSPY 798 AAR+R+E+ L+ + Sbjct: 669 AARVREELMALRKQAF 684 >gi|297578626|ref|ZP_06940554.1| excinuclease ABC subunit B [Vibrio cholerae RC385] gi|297536220|gb|EFH75053.1| excinuclease ABC subunit B [Vibrio cholerae RC385] Length = 676 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++IE IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|153800908|ref|ZP_01955494.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3] gi|229515404|ref|ZP_04404863.1| excinuclease ABC subunit B [Vibrio cholerae TMA 21] gi|229525631|ref|ZP_04415036.1| excinuclease ABC subunit B [Vibrio cholerae bv. albensis VL426] gi|124123499|gb|EAY42242.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3] gi|229339212|gb|EEO04229.1| excinuclease ABC subunit B [Vibrio cholerae bv. albensis VL426] gi|229347173|gb|EEO12133.1| excinuclease ABC subunit B [Vibrio cholerae TMA 21] Length = 676 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|308049943|ref|YP_003913509.1| Excinuclease ABC subunit B [Ferrimonas balearica DSM 9799] gi|307632133|gb|ADN76435.1| Excinuclease ABC subunit B [Ferrimonas balearica DSM 9799] Length = 665 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/662 (55%), Positives = 481/662 (72%), Gaps = 15/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA+LL G+ + Q LLGVTGSGKTFTMA V+ + RP I++A Sbjct: 5 FKLHSQFQPAGDQPGAIAKLLDGLDAGLAHQTLLGVTGSGKTFTMANVVAELNRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPSTDTFIEKDASINAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V+SVS IYG+G ++Y M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPKAYMAMLLHLRQGDIMNQRDILKRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV G+ I+IFP+ E A R+ +F +IE I+ F PLTG + R V +Y Sbjct: 185 DMAFERGTFRVRGEVIDIFPADSEKEAVRIELFDEEIERITLFDPLTGAQSREVARYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR T+ A+ IK ELK+R +L +L+EAQR+++R +D+EM+ G C Sbjct: 245 PKTHYVTPRETIIGAIDKIKAELKVRHQQLLDNNKLIEAQRIKERTQFDVEMMLELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTL +Y+P+D LL +DESHVT+PQ+ MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYLPDDGLLIIDESHVTVPQLGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + P T+ VSATP +EL++ G +VEQ++RPTGL+DP +E Sbjct: 365 GFRLPSAMDNRPLKFEEFEAIAPQTVFVSATPAKYELDKSAGDVVEQVVRPTGLLDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL + ++RVRY+HS+V T+E Sbjct: 425 VRPVATQVDDLLSEIRIRADKNERVLVTTLTKRMAEDLTEYLEDHDVRVRYLHSDVDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT+GRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 NVN K ILYAD IT S++ AI ET RRR KQ +N +H I P+ + +KI +V+D Sbjct: 545 NVNGKAILYADRITGSMERAIGETQRRRAKQEAYNAEHGIVPKGLVKKITDVMDVGGKRR 604 Query: 735 PILLEDAAT--TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 P + A T T +D +L+ S + L K M+ A NL FE+AA +RDEI Sbjct: 605 PGERKVAETKPTYQPVDPAKLAKS-------IAELEKTMYEHARNLEFEKAAALRDEITA 657 Query: 793 LK 794 L+ Sbjct: 658 LR 659 >gi|254291758|ref|ZP_04962544.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226] gi|150422351|gb|EDN14312.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226] Length = 676 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGLKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|326317579|ref|YP_004235251.1| excinuclease ABC subunit B [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374415|gb|ADX46684.1| excinuclease ABC, B subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 696 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/664 (54%), Positives = 486/664 (73%), Gaps = 7/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI QL++G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 25 FELYQPYPPAGDQPVAIDQLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 85 PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D ++V++VS IYGIG+ E Y++M +++GD + Q++++S L++ QY R Sbjct: 145 SATKSVLERRDVVIVATVSAIYGIGAPEDYTKMRFIMRVGDEISQRDVISRLIRMQYTRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+I++FPS ++A R+ +F ++IE +S F PLTG+ + + IY Sbjct: 205 EQDFARGTFRVRGDTIDVFPSEHSELAIRIELFDDEIETLSLFDPLTGRVRQKIPRFTIY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL RL + EG+L+EAQRLEQR +DLEML G C+ Sbjct: 265 PSSHYVTPRDKVLAAVETIKLELNERLAQFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PG+PPPTL +Y+P D+L+F+DESH I Q++ M+ GD RK TL EY Sbjct: 325 GIENYTRHLSGAAPGDPPPTLTDYLPPDALMFLDESHQMIGQLAAMFNGDRARKTTLVEY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E + G +V+Q++RPTGLVDP VE Sbjct: 385 GFRLPSALDNRPLKFEEFERRMRQVVFVSATPADYE-KTHSGKVVDQVVRPTGLVDPVVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + ++ R+L+T LTKRMAE LT+YL + ++VRY+HS++ T+E Sbjct: 444 VRPATHQVDDVLQEIRVRVERSERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDIDTVE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AI ET RRR KQ+ HN+ I P+S+ +++ ++ID + E Sbjct: 564 NLNGQAILYADRITDSMKKAIGETERRRAKQIAHNEAQGITPRSIVKQVRDLIDGVYSEK 623 Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ AQ +S+K +K L KQM A NL FE+AAR+RD++ RLK Sbjct: 624 TGREAERLEQEALRRAQVEDMSEKDVAREIKRLEKQMLDHARNLEFEQAARVRDQLNRLK 683 Query: 795 SSPY 798 + + Sbjct: 684 AQAF 687 >gi|262191538|ref|ZP_06049721.1| excinuclease ABC subunit B [Vibrio cholerae CT 5369-93] gi|262032592|gb|EEY51147.1| excinuclease ABC subunit B [Vibrio cholerae CT 5369-93] Length = 676 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|114331080|ref|YP_747302.1| excinuclease ABC subunit B [Nitrosomonas eutropha C91] gi|114308094|gb|ABI59337.1| Excinuclease ABC subunit B [Nitrosomonas eutropha C91] Length = 699 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/673 (55%), Positives = 487/673 (72%), Gaps = 8/673 (1%) Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 ITF +++ + P+GDQP AI +L+ GI S Q LLGVTGSGKTFT+A +I + Sbjct: 3 ITFPDSPYKLNQAFQPAGDQPDAIRKLVDGIESGLSFQTLLGVTGSGKTFTIANMIAQLG 62 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPAI+MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE Sbjct: 63 RPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE 122 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 I++MR SAT+SLLER D I+V+SVSCIYGIG Y MI+ ++ + + Q++++ L Sbjct: 123 HIEQMRLSATKSLLEREDTIIVASVSCIYGIGDPVDYHGMILHVREHEKITQRDIIQRLA 182 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY+R + RGTFRV GD ++IFP+ + A R+S+F +++E I+ F PLTG + Sbjct: 183 DMQYQRNEFEFARGTFRVRGDVLDIFPAENSETALRISLFDDEVESIALFDPLTGHTRQK 242 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 V +Y +SHYVTPR T A++ IK EL RL L + +L+EAQRLEQR +DLEML Sbjct: 243 VSRYTVYPSSHYVTPRSTTLRAIETIKTELAERLNHLHENHKLVEAQRLEQRTRFDLEML 302 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C+ IENYSR+L+GR PG+PPPTL +Y+P ++L+ +DESHVT+PQ+ GMY+GD R Sbjct: 303 NELGFCKGIENYSRHLSGRLPGDPPPTLIDYLPGNALMIIDESHVTVPQVGGMYKGDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K L YGFRLPS +DNRPLRFEE+ L P TI VSATP +E+ Q G IVEQ++RPTG Sbjct: 363 KENLVAYGFRLPSALDNRPLRFEEFEKLMPQTIFVSATPADYEI-QHSGQIVEQVVRPTG 421 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 LVDP + IR TQV+D+ E+++ +QG R L+T LTKRMAEDLT+Y + IRVRY+H Sbjct: 422 LVDPVIIIRPVATQVDDLMSEVSMRTKQGERTLITTLTKRMAEDLTDYFSDHGIRVRYLH 481 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQ Sbjct: 482 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEASLVGILDADKEGFLRSERSLIQ 541 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAAR++N VILYAD IT S++ AIDET RRR KQ N++++I P+ V ++I ++I Sbjct: 542 TMGRAARHINGTVILYADRITNSMRRAIDETERRRNKQKLFNQQNDITPRGVSKRIKDLI 601 Query: 734 DPIL-LEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D + +DAA I A ++ + + ++ L K M AA ++ FE+AA+ RDEI Sbjct: 602 DGVYDSKDAAEHQKVAQIQAHYAAMDETQLAKEIQRLEKAMLTAAKSMEFEQAAQYRDEI 661 Query: 791 KRLKSSPYFQGLD 803 K LK+ + +D Sbjct: 662 KNLKNKLFIGMID 674 >gi|332982310|ref|YP_004463751.1| Excinuclease ABC subunit B [Mahella australiensis 50-1 BON] gi|332699988|gb|AEE96929.1| Excinuclease ABC subunit B [Mahella australiensis 50-1 BON] Length = 655 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/655 (56%), Positives = 484/655 (73%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +L G+ + K Q +LGVTGSGKTFTMA +I+ +Q+P +V+A Sbjct: 4 FNLISEYKPTGDQPQAIEKLADGVKNGLKFQTMLGVTGSGKTFTMANIIQKVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID+MRH Sbjct: 64 HNKTLAAQLCGEFKEFFPNNAVEYFVSYYDYYQPEAYIPTTDTYIEKDSAINDEIDKMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+G+ Y+ M+V L+ G ++ E+L L++ QY+R Sbjct: 124 SATSALLERRDVIVVASVSCIYGLGNPNEYASMVVSLRPGMERDRDEVLHRLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ D A RV FG++I+ I+E +TG+ + + I+ Sbjct: 184 DIDFVRGTFRVHGDVVEIFPASSSDKAIRVEFFGDEIDRITEVDIVTGEITAELNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + TL+ A++ I+ +L +R E + + +LLEAQR+ QR +D+EM+ G CQ Sbjct: 244 PASHYVTSQDTLDRAIEQIERDLAIREAEFKAQNKLLEAQRIVQRTNFDIEMMREVGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PG+PP TL +Y P+D L+F+DESHVT+PQI GMY GD RK TL EY Sbjct: 304 GIENYSRYFDGRQPGQPPYTLLDYFPDDFLIFIDESHVTLPQIRGMYAGDRSRKDTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ I VSATPG +E+E Q +VEQIIRPTGLVDP VE Sbjct: 364 GFRLPAAYDNRPLTFEEFEAHINQIIFVSATPGPYEMEHSQQ-VVEQIIRPTGLVDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++G R+L+T LTKRMAE+LT+YL E NI+VRYMHS+V T+E Sbjct: 423 VRPVQGQIDDLIAEIKKRVEKGQRVLVTTLTKRMAENLTDYLKELNIKVRYMHSDVATIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YAD IT S++ AIDET RRR+ Q+E+N+KH I PQ++K+ I ++I+ + + Sbjct: 543 NVEGKVIMYADNITGSMKRAIDETNRRRQLQIEYNQKHGITPQTIKKGIRDIIEITKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + L++++ + L ++M AA + FE+AA RD++ LKS Sbjct: 603 KR----EVYTAKTKLTRQEIVDIIDELERKMKEAAAAMEFEKAAEYRDQMLELKS 653 >gi|238028103|ref|YP_002912334.1| excinuclease ABC subunit B [Burkholderia glumae BGR1] gi|237877297|gb|ACR29630.1| Excinuclease ABC, B subunit [Burkholderia glumae BGR1] Length = 696 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVEFDGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRNGDRIGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL +E RL+EAQRLEQR + Sbjct: 253 RVRQKIARFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRENRLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQVAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLAEINERVKAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADHMTDSMRRAIDETERRRAKQIAHNEKLGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNVDEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMTDYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|120611112|ref|YP_970790.1| excinuclease ABC subunit B [Acidovorax citrulli AAC00-1] gi|120589576|gb|ABM33016.1| Excinuclease ABC subunit B [Acidovorax citrulli AAC00-1] Length = 696 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/664 (54%), Positives = 487/664 (73%), Gaps = 7/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI QL++G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 25 FELYQPYPPAGDQPTAIDQLVEGVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 85 PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D ++V++VS IYGIG+ E Y++M +++GD + Q++++S L++ QY R Sbjct: 145 SATKSVLERRDVVIVATVSAIYGIGAPEDYTKMRFIMRVGDEISQRDVISRLIRMQYTRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+I++FPS ++A R+ +F ++IE +S F PLTG+ + + IY Sbjct: 205 EQDFARGTFRVRGDTIDVFPSEHSELAIRIELFDDEIETLSLFDPLTGRVRQKIPRFTIY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL RL + EG+L+EAQRLEQR +DLEML G C+ Sbjct: 265 PSSHYVTPRDKVLAAVETIKLELNERLAQFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PG+PPPTL +Y+P D+L+F+DESH I Q++ M+ GD RK TL EY Sbjct: 325 GIENYTRHLSGAAPGDPPPTLTDYLPPDALMFLDESHQMIGQLAAMFNGDRARKTTLVEY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E + G +V+Q++RPTGLVDP VE Sbjct: 385 GFRLPSALDNRPLKFEEFERRMRQVVFVSATPADYE-KTHSGQVVDQVVRPTGLVDPVVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + ++ R+L+T LTKRMAE LT+YL + ++VRY+HS++ T+E Sbjct: 444 VRPATHQVDDVLQEIRVRVERNERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDIDTVE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT+S++ AI ET RRR KQ+ HN+ I P+S+ +++ ++ID + E Sbjct: 564 NLNGQAILYADRITESMKKAIGETERRRAKQIAHNEAQGITPRSIVKQVRDLIDGVYSEK 623 Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ AQ +S+K +K L KQM A NL FE+AAR+RD++ RLK Sbjct: 624 TGREAERLEQEALRRAQVEDMSEKDVAREIKRLEKQMLDHARNLEFEQAARVRDQLNRLK 683 Query: 795 SSPY 798 + + Sbjct: 684 AQAF 687 >gi|237745871|ref|ZP_04576351.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS] gi|229377222|gb|EEO27313.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS] Length = 699 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/671 (54%), Positives = 487/671 (72%), Gaps = 8/671 (1%) Query: 135 SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 K +TF F++ + PSGDQP AI +L++GI Q LLGVTGSGKT+TMA VI Sbjct: 14 GKVVTFPNSPFELHQPFPPSGDQPEAIDRLVEGIEDGLSYQTLLGVTGSGKTYTMANVIA 73 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 + RPAIV APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+ Sbjct: 74 RLGRPAIVFAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSA 133 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE I++MR S T+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ D + Q+++++ Sbjct: 134 INEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTRDKIPQRDVIT 193 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV+ QY R DI RGTFRV GD+I++FP+ D A R+ MF ++IE + F PLTG+ Sbjct: 194 RLVQMQYTRNDIDFSRGTFRVRGDTIDVFPAENADYALRIEMFDDEIESLHFFDPLTGKV 253 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 ++ + +Y SHYVTPR T+ A++ IKEEL+ R + G+ +E QR++QR +DL Sbjct: 254 LQKIPRFTVYPGSHYVTPRETVLRAIETIKEELRERKEWFRQNGKFIEEQRIDQRTRFDL 313 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G + IENYSR+LTGR G+ PPTL +Y+P D+L+F+DESHVTI Q++GMY GD Sbjct: 314 EMMHELGFTKGIENYSRHLTGRKAGDAPPTLVDYLPSDALMFLDESHVTIGQLNGMYNGD 373 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L +YGFRLPS +DNRPLRF+E+ T+ VSATP ++EL G +VEQ++R Sbjct: 374 RSRKTNLVDYGFRLPSALDNRPLRFDEFESKMRQTVFVSATPANYELAHS-GQVVEQVVR 432 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP +E+R A TQV+D+ EI+ ++ R+L+T LTKRMAE LTE+L E IRVR Sbjct: 433 PTGLVDPAIEVRPASTQVDDLLAEIHDRVEKSERVLVTTLTKRMAEQLTEFLSENGIRVR 492 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ S Sbjct: 493 YLHSDIDTVERVEIVRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 552 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARN+N ILYADT+T S++ AIDET RRR KQL +N++HNI P + ++I Sbjct: 553 LIQTIGRAARNLNGSAILYADTMTDSMKRAIDETERRRAKQLAYNEQHNITPAGIMKEIR 612 Query: 731 EVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 ++ID + + + + AQ +S+K+ +K L KQM A NL FE+AA+ R Sbjct: 613 DLIDGVFHPQDSLQELHVADEQAQYDVMSEKELSREIKKLEKQMMEHAKNLEFEKAAQTR 672 Query: 788 DEIKRLKSSPY 798 D++ L+ + Sbjct: 673 DQLHLLREKAF 683 >gi|283784539|ref|YP_003364404.1| UvrABC system protein B (excinuclease ABC subunit B) [Citrobacter rodentium ICC168] gi|282947993|emb|CBG87557.1| UvrABC system protein B (excinuclease ABC subunit B) [Citrobacter rodentium ICC168] Length = 673 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/664 (56%), Positives = 479/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELGERRKSLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRARASINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N +H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITASMAKAISETERRREKQQQYNAEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATT----------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T D+ ++ +S K + + L QM A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRSTAKADSVEMDMSPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|218778625|ref|YP_002429943.1| excinuclease ABC, B subunit [Desulfatibacillum alkenivorans AK-01] gi|218760009|gb|ACL02475.1| excinuclease ABC, B subunit [Desulfatibacillum alkenivorans AK-01] Length = 679 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/659 (54%), Positives = 474/659 (71%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 ++ T FQ+ + + P GDQPAAI L KG++ +K Q+LLGVTGSGKTFTMA V +P Sbjct: 15 EEFTEFQVVSPFEPKGDQPAAIEYLAKGVNEGKKHQVLLGVTGSGKTFTMAHVAARCGKP 74 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+APNK LAAQLY+EFK FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+S INE I Sbjct: 75 VLVLAPNKTLAAQLYNEFKQLFPHNAVEYFVSYYDYYQPEAYLPNSDTYIEKDSKINEMI 134 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RH+AT ++L R D I+V+SVSCIYG+G+ E Y M ++L +G + +++LL LV Sbjct: 135 DKLRHAATVAVLTRRDVIIVASVSCIYGLGAPEDYIAMRLELTVGMELSREKLLKDLVAM 194 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+R D+ RG FRV GD +EI+P++ +D A R+ FG+D++ ISE PL G ++ ++ Sbjct: 195 LYERNDMDFHRGVFRVRGDRVEIYPAYWDDQAIRIEFFGDDVDSISEIDPLRGVVMKKLQ 254 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +Y SHYVT + TL AM I EELK+R+ +L+EAQR+++R YDLEM+ Sbjct: 255 RTMVYPASHYVTSKETLKRAMGAITEELKVRVAHFRDTNQLIEAQRIQERTDYDLEMMHE 314 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENY+R+LTGRN GEPPPTL ++ PED L+F+DESH+ +PQ+ GM+RGD RK Sbjct: 315 LGYCTGIENYARHLTGRNEGEPPPTLIDFFPEDFLMFIDESHMAVPQVRGMFRGDRSRKE 374 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL ++GFRLPS +DNRPL FEE+ + VSATP +ELE G I EQI+RPTGL+ Sbjct: 375 TLVQFGFRLPSALDNRPLMFEEFAEKVKQVVYVSATPADYELEVADGAIAEQIVRPTGLM 434 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + +R A QV+D+ +EI + + R+L+T LTKRMAEDL +Y + VRY+HS+ Sbjct: 435 DPEIIVRPATNQVDDLLEEIRVRVENNERVLITTLTKRMAEDLCDYYEGLGLAVRYLHSD 494 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KT+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT+ Sbjct: 495 IKTMERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTV 554 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNVN KVILYAD IT+S+++A+DE+ RRR+ Q +N+ + I P+S+K++I + D Sbjct: 555 GRAARNVNGKVILYADAITRSMKMAMDESQRRRDLQAAYNEANGITPESIKKEIGSIFDS 614 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D T Q ++ K + L K+M AA L FE AA +RD+IK LK Sbjct: 615 VYEADYVTVEADKKEAQEAIESKDLDRLIAMLEKEMQQAAKELAFERAAELRDQIKDLK 673 >gi|171320673|ref|ZP_02909689.1| excinuclease ABC, B subunit [Burkholderia ambifaria MEX-5] gi|171094076|gb|EDT39169.1| excinuclease ABC, B subunit [Burkholderia ambifaria MEX-5] Length = 696 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|194289257|ref|YP_002005164.1| excinuclease ABC subunit b [Cupriavidus taiwanensis LMG 19424] gi|193223092|emb|CAQ69097.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition component [Cupriavidus taiwanensis LMG 19424] Length = 694 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/673 (54%), Positives = 487/673 (72%), Gaps = 8/673 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + K +TF FQ+ + P+GDQP AI QL++G+ Q LLGVTGSGKTFTMA V Sbjct: 12 DEDKFVTFPDSPFQLYQPFPPAGDQPEAIRQLVEGVEDGLSYQTLLGVTGSGKTFTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SLLER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTVIVATVSAIYGIGNPTEYHQMILTLRAGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A R+ MF +++E + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLHFFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL KE RL+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEAIKAELRERLEFFHKENRLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML G C+ IENYSR+L+G PG+PPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLSELGFCKGIENYSRHLSGARPGDPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL EYGFRLPS +DNRPL+F+E+ + V+ATP +E E G +VEQ+ Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFDEFERKMRQVMFVTATPAQFEQEHA-GQVVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 431 VRPTGLVDPIIMVRPATTQVDDLLSEIHARVEAGERVLVTTLTKRMAEQLTEFLTENGVK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILYAD +T S++ AIDET RRR KQ+ N+ + I P+ V ++ Sbjct: 551 RSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAFNEANGITPRGVVKR 610 Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + A + +Q +S+K+ +K L K M A NL FE+AA+ Sbjct: 611 IKDIIDGVYNASDAKAELQAAQEQARYEDMSEKQVSREIKRLEKLMLDHARNLEFEQAAQ 670 Query: 786 IRDEIKRLKSSPY 798 +RD++ +LK+ + Sbjct: 671 VRDQLAKLKAQVF 683 >gi|170702361|ref|ZP_02893253.1| excinuclease ABC, B subunit [Burkholderia ambifaria IOP40-10] gi|170132720|gb|EDT01156.1| excinuclease ABC, B subunit [Burkholderia ambifaria IOP40-10] Length = 696 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLELFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLVTVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|189426491|ref|YP_001953668.1| excinuclease ABC subunit B [Geobacter lovleyi SZ] gi|189422750|gb|ACD97148.1| excinuclease ABC, B subunit [Geobacter lovleyi SZ] Length = 665 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/657 (55%), Positives = 480/657 (73%), Gaps = 1/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T Y PSGDQP AI +L+ GI +K Q+LLGVTGSGKTFT+A VI RPA+V+A Sbjct: 4 FKLATTYTPSGDQPQAIDELVAGIERGDKHQVLLGVTGSGKTFTVANVIARTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH Sbjct: 64 PNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPNTDTFIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D I+V+SVSCIYGIGS E+Y M + GD + LL LV+ QY+R Sbjct: 124 SATMSLLTRPDVIIVASVSCIYGIGSPEAYQAMHIFFHQGDDYGRDTLLKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IEIFP++ + A R+ FG+++E IS+ PL G ++ + + I+ Sbjct: 184 DTDFHRGTFRVRGDVIEIFPAYDSERALRIEFFGDEVETISQIDPLRGVVLQKLTKVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV+ + L ++ I+ +L+ R+ + +G+LLEAQR+EQR YD+EM+E G CQ Sbjct: 244 PASHYVSSKENLERSVAQIRLDLEERIRLFKDQGKLLEAQRIEQRTYYDIEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL R PGEPP TL +Y P+D +LFVDESH+T Q+ GMYRGD RK TL EY Sbjct: 304 GIENYSRYLDNRQPGEPPFTLIDYFPKDFILFVDESHITNAQVGGMYRGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL F+E+ + VSATP +EL+Q G+ VEQ+IRPTGLVDP +E Sbjct: 364 GFRLPAALDNRPLNFQEFESRINQVVHVSATPADYELQQAGGVFVEQVIRPTGLVDPQIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A QV+D+ E+ L +G R+L+T LTKRMAE+LT Y E +RVRY+HS++ T+E Sbjct: 424 IRPAAGQVDDLLHEVRLTVAKGDRVLVTTLTKRMAEELTNYYQELGVRVRYLHSDIDTIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V++YAD +T+S+Q +DET RRR KQL +N++H I P++V++ + +++ I +D Sbjct: 544 NVDGRVLMYADQVTRSMQACLDETGRRRSKQLAYNQEHGITPETVRKGMRSILESIAEKD 603 Query: 741 AATTNISIDAQQ-LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + D ++ + K+ +K +RK+M AA L+FE+AA +RD IK+L+ + Sbjct: 604 YVTPPVVADLEEAYGIELKEIPKLIKKMRKEMLAAAKELDFEKAAELRDRIKQLEDA 660 >gi|167572218|ref|ZP_02365092.1| excinuclease ABC subunit B [Burkholderia oklahomensis C6786] Length = 696 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFDGSPFQLYQPYPPAGDQPTAITTLVEGVEDGLSFQTLLGVTGSGKTYTMANA 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L++GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRLGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDSLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL +EG+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPAIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+ N++ I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADRITDSMRRAIDETERRRAKQIAFNEQMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|167565045|ref|ZP_02357961.1| excinuclease ABC subunit B [Burkholderia oklahomensis EO147] Length = 696 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFDGSPFQLYQPYPPAGDQPTAITTLVEGVEDGLSFQTLLGVTGSGKTYTMANA 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L++GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRLGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVDLFDDEVDSLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL +EG+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPAIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+ N++ I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADRITDSMRRAIDETERRRAKQIAFNEQMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|315180790|gb|ADT87704.1| excinuclease ABC subunit B [Vibrio furnissii NCTC 11218] Length = 676 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/669 (55%), Positives = 486/669 (72%), Gaps = 19/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI QLL G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSEYQPSGDQPEAIRQLLDGVDAGLAHQTLLGVTGSGKTFTLANVIAKAQRPTILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG K R++ + Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVECISIFDPLTGAIKQRDLPRFTV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A+++IK EL R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEHIKAELASRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSGNDIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVID-- 734 RN+ + ILYAD ITKS++ A+DET RRREKQ +N+ I PQ++K + IME+ D Sbjct: 545 RNLEGRAILYADNITKSMKKAMDETNRRREKQQAYNEAMGIQPQALKRNVKDIMELGDIT 604 Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + L A T+ S D +++ ++ + + L QM+ A +L FE AA Sbjct: 605 KSRKQRTSKVVPLAKVAETSASYD----TMTPQQLEKEINKLEAQMYKHAQDLEFELAAE 660 Query: 786 IRDEIKRLK 794 RD+++ L+ Sbjct: 661 KRDQLEALR 669 >gi|52425426|ref|YP_088563.1| excinuclease ABC subunit B [Mannheimia succiniciproducens MBEL55E] gi|81825519|sp|Q65ST2|UVRB_MANSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|52307478|gb|AAU37978.1| UvrB protein [Mannheimia succiniciproducens MBEL55E] Length = 678 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/664 (55%), Positives = 484/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ PSGDQP AI L + ++ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSEFKPSGDQPQAIEILAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY +M++ L+ G ++Q+++L L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILVRLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V +Y Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTGFGAVPRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK EL R KE +LLE QR+ QR +D+EM+ G C Sbjct: 250 PKTHYVTPREQILDAIEKIKSELADRREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRN GEPPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDALLVIDESHVTVPQIGGMYRGDRSRKETLVEY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLDPEIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ E A + R+L+T LTKRMAEDLT+YL E IRVRY+HS++ T+E Sbjct: 430 IRPVSIQVDDLLSEARQRADRNERVLVTTLTKRMAEDLTDYLDEHGIRVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILYAD IT S++ AI ET RRREKQ+++N++H I PQ + +K+ E++D + + Sbjct: 550 NLKGKAILYADRITNSMEKAITETNRRREKQMKYNEEHGITPQGLNKKVGELLD--IGQG 607 Query: 741 AATTNISIDAQQ----------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + + + Q + ++ K+ + +K L +QM+ A +L FE+AA IRD++ Sbjct: 608 GSNKSRNKPRSQKAAEPATTYAIPMTAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQL 667 Query: 791 KRLK 794 +L+ Sbjct: 668 HKLR 671 >gi|323525489|ref|YP_004227642.1| excinuclease ABC subunit B [Burkholderia sp. CCGE1001] gi|323382491|gb|ADX54582.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1001] Length = 697 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 14 DESKFVRFEGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDI 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL EG+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSEGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDAIMLLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R ARTQV+DV EIN G R+L+TVLTKRMAE LTE+L + I+ Sbjct: 433 VRPTGLVDPEIEVRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGIK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ N +H I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLEHGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ LK L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|332534083|ref|ZP_08409932.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis ANT/505] gi|332036520|gb|EGI72988.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis ANT/505] Length = 664 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/658 (55%), Positives = 482/658 (73%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P+GDQP AI QL +G+ + Q LLG TG+GKTFTMA +I + RP I+MA Sbjct: 5 FQLRSHFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV +DT+IEK++SINE I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ LK+G+ V+Q+++L L + QY R Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV G+ ++IFP+ + A RV MF ++IE +S F PLTG +++ IY Sbjct: 185 DIDFSRGTYRVRGEVVDIFPAESDTFAVRVEMFDDEIERLSIFDPLTGAVEKHIVRTTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+ I+EELK R +L +L+E QR+ QR YD+EM+ G C Sbjct: 245 PKTHYVTPREKILGAIDKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDMEMMRELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI MY+GD RK L EY Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS MDNRPLRFEE+ + P TI VSATPG +ELE+C G I EQ+IRPTGL+DP +E Sbjct: 365 GFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELERCVGAIAEQVIRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + ++G R+L+T LTKRM+EDLT+YL E ++VRY+HS++ T+E Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS S+IQTIGRAAR Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +++ + ILY D ITKS+ A+DET RRRE Q +N +H I P S+ +KI++ +D + E+ Sbjct: 545 HLDGRAILYGDKITKSMAKAMDETARRREIQHAYNVEHGIEPHSLAKKILDAMD--VGEE 602 Query: 741 AATTN----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + I D++++ LS K+ +K L +MH A +L FE+A +RDEI L+ Sbjct: 603 AGPKDNLRLIRKDSKKV-LSAKEITVQIKQLETKMHAYASDLEFEKAGSVRDEIHELQ 659 >gi|229523191|ref|ZP_04412598.1| excinuclease ABC subunit B [Vibrio cholerae TM 11079-80] gi|229339554|gb|EEO04569.1| excinuclease ABC subunit B [Vibrio cholerae TM 11079-80] Length = 676 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/668 (54%), Positives = 482/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A R+L+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI L+ Sbjct: 662 RDEIHLLR 669 >gi|89092647|ref|ZP_01165600.1| excinuclease ABC subunit B [Oceanospirillum sp. MED92] gi|89083159|gb|EAR62378.1| excinuclease ABC subunit B [Oceanospirillum sp. MED92] Length = 673 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/677 (55%), Positives = 492/677 (72%), Gaps = 25/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA+L++GI S Q LLGVTGSGKTFT+A VI QRP I+MA Sbjct: 5 FKVHSKFTPAGDQPNAIAELVEGIESGLAAQTLLGVTGSGKTFTVANVIAQAQRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 65 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G +SY M++ + GD ++Q+ +L L + QY R Sbjct: 125 SATKALLEREDAIIVATVSAIYGLGDPKSYLGMMLHVDRGDIIDQRAVLRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGT+RV GD I+IFP+ E A R+ +F +IEEIS F PLTG+ +R V IY Sbjct: 185 DVELHRGTYRVRGDVIDIFPAESEKEAVRLELFDEEIEEISYFDPLTGEVLRRVPRATIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A+ IK+EL+ RL +L + +L+EAQRLEQR YD+EM+ G C Sbjct: 245 PKSHYVTPRETLLAAVDKIKDELRGRLEQLRENNKLVEAQRLEQRTLYDMEMIMELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ G+ PPTLF+Y+P++SLL +DESHVT+PQI MYRGD RK TL E+ Sbjct: 305 GIENYSRYLSGRDSGQAPPTLFDYLPDNSLLVIDESHVTVPQIGAMYRGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW P I VSATP +E Q +VEQ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPMKFEEWERESPQMIFVSATPSKYEAANQQ-QVVEQVVRPTGLIDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI + R+++TVLTKRMAEDLTE+L E +RVRY+HS++ T+E Sbjct: 424 VRPASTQVDDLLSEIQKIVAKQERVVVTVLTKRMAEDLTEFLDEHGVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR+G+FDVLVGINLLREG+D+PE LV ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 484 RVEIIRDLRIGEFDVLVGINLLREGIDMPEVSLVTILDADKEGFLRSDTSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD IT S+Q A+DET RRR+KQ+ N++H I P+ +K+ + ++ +E Sbjct: 544 NVNGKAILYADRITGSMQRAMDETDRRRQKQIAFNEEHGIVPKGIKKSVADI-----MEG 598 Query: 741 AATT-----------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 A+T + +D Q+S +K+ KA K L +M+ AA NL FE A Sbjct: 599 ASTVPGRKASRTAKKVAEKAGDYQVDPAQMS-AKELSKAMTK-LEDKMYEAAKNLEFELA 656 Query: 784 ARIRDEIKRLKSSPYFQ 800 A+ RDE++ LK + + Sbjct: 657 AKYRDELQTLKQHSFIE 673 >gi|113867172|ref|YP_725661.1| excinuclease ABC subunit B [Ralstonia eutropha H16] gi|113525948|emb|CAJ92293.1| Excinuclease ABC, helicase subunit (B) [Ralstonia eutropha H16] Length = 694 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/673 (54%), Positives = 488/673 (72%), Gaps = 8/673 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + K +TF FQ+ + P+GDQP AI QL++G+ Q LLGVTGSGKTFTMA V Sbjct: 12 DEDKFVTFPGSPFQLYQPFPPAGDQPEAIRQLVEGVEDGLSFQTLLGVTGSGKTFTMANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I M RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARMGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SLLER D I+V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPTEYHQMILTLRAGDKISQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A R+ MF +++E + F PLTG Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL KE RL+EAQRLEQR + Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEAIKSELRERLEFFHKENRLVEAQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML G C+ IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY Sbjct: 312 DLEMLSELGFCKGIENYSRHLSGAKPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL EYGFRLPS +DNRPL+F+E+ + VSATP +E + G +VEQ+ Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFDEFERKMRQVMFVSATPAQFEQDNA-GQVVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI+ + G R+L+T LTKRMAE LTE+L E ++ Sbjct: 431 VRPTGLVDPIIMVRPATTQVDDLLSEIHARVEVGERVLVTTLTKRMAEQLTEFLSENGVK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILYAD +T+S++ AI ET RRR KQ+ N+ + I P+ V ++ Sbjct: 551 RSLIQTIGRAARNVNGTAILYADRMTESMKKAIGETERRRAKQIAFNEANGITPRGVVKR 610 Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + + A + +Q +S+K+ ++ L K M A NL FE+AA+ Sbjct: 611 IKDIIDGVYSVNDARAELLAAQEQARYEDMSEKQVSKEIRRLEKLMLDHARNLEFEQAAQ 670 Query: 786 IRDEIKRLKSSPY 798 +RD++ +LK+ + Sbjct: 671 VRDQLAKLKAQVF 683 >gi|317047396|ref|YP_004115044.1| excinuclease ABC subunit B [Pantoea sp. At-9b] gi|316949013|gb|ADU68488.1| excinuclease ABC, B subunit [Pantoea sp. At-9b] Length = 673 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/664 (56%), Positives = 479/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVVSVVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + +M+ IK+EL +R L + +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQSMEEIKKELVVRRQVLLENNKLLEEQRITQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPILE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S+ AI+ET RRREKQ +N+ + I PQ + +KI ++++ L ++ Sbjct: 545 NINGKAILYADKITNSMARAIEETERRREKQQRYNEVNGIVPQGLNKKITDILE--LGKN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 T +A L+L+ + + + L QM A NL FEEAAR+RD++ Sbjct: 603 VVKTRGKGKTATRSAAETEANYLALTPQAMQKKIHELEGQMQQHAQNLEFEEAARVRDQL 662 Query: 791 KRLK 794 L+ Sbjct: 663 HELR 666 >gi|330446481|ref|ZP_08310133.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490672|dbj|GAA04630.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 675 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/669 (54%), Positives = 488/669 (72%), Gaps = 18/669 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y PSGDQP AI QL+ G+ S Q LLGVTGSGKTFT+A VI RP +++ Sbjct: 4 LFSLASEYSPSGDQPTAIEQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIAQANRPTLIL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+++SVS IYG+G +SY +M++ ++ GD ++Q+++L L + QY R Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378 D+ RGTFRV G+ I+IFP+ E A R+ +F +++E IS F PLTG I R++ Sbjct: 184 NDVAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSVIQRDLPRTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK+EL +R + +L+E QR+ QR +D+EM+ G Sbjct: 244 IYPKTHYVTPREKILEAIEGIKKELIVRKEQFISNNKLVEEQRISQRTQFDIEMMNELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+ QI MYRGD RK L Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYELEKSSNDIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI++ + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVATQVDDLLSEIHIREAKNERVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733 ARN+ K ILY D IT S++ AI+ET RRREKQ E+N KH I PQ + +KI +++ Sbjct: 544 ARNIEGKAILYGDRITGSMERAINETQRRREKQTEYNLKHGITPQKLNKKIGDILELGGA 603 Query: 734 DPILLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 +P A + N + D ++ +L+ ++ ++ +++L KQM+ A NL FE+AA Sbjct: 604 NP----RAKSRNRAADLHKVAETKGTYSTLTPQQLESQIQALEKQMYDFAQNLEFEQAAE 659 Query: 786 IRDEIKRLK 794 RD+I++L+ Sbjct: 660 TRDKIQKLR 668 >gi|300722421|ref|YP_003711709.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus nematophila ATCC 19061] gi|297628926|emb|CBJ89509.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus nematophila ATCC 19061] Length = 675 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/662 (56%), Positives = 476/662 (71%), Gaps = 8/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP+AI QL +G+ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 9 FKLHSDFKPGGDQPSAIRQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPAMILA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 69 PNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G ESY +M++ L G ++Q+ +L L + QY R Sbjct: 129 SATKALLERRDVIVVASVSAIYGLGDPESYLKMMLHLTDGMLIDQRAILRRLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ + A RV +F +++E +S F PLTGQ NV +Y Sbjct: 189 DQAFQRGTFRVRGEVIDIFPAESNEHALRVELFDDEVERLSLFDPLTGQVQYNVPRYTVY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + +M IK EL+ R L G+LLE QR+ QR +DLEM+ G C Sbjct: 249 PKTHYVTPRERILQSMAEIKIELEQRRQVLLASGKLLEEQRITQRTQFDLEMMNELGYCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 309 GIENYSRYLSGRATGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI +SATPG +ELE+ IVEQ++RPTGL+DP VE Sbjct: 369 GFRLPSALDNRPLRFEEFEALAPQTIYISATPGHYELEKSGNEIVEQVVRPTGLIDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L A + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 429 VRPVTTQVDDLMSEIRLRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI- 736 N++ K ILY D IT S+ AI ET RRR KQ N +H I P + +KI +++ P+ Sbjct: 549 NLHGKAILYGDRITDSMAKAIGETERRRVKQQAFNDEHGIVPTGLNKKIGDILRIGQPVN 608 Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + + D Q LS K+ + ++ L +M+ A +L FE+AA +RD+++ L Sbjct: 609 GKGKTRGKSKVTLGTDDYQ-KLSAKELENKIRELENKMYQHARDLEFEQAANVRDQVQAL 667 Query: 794 KS 795 ++ Sbjct: 668 RA 669 >gi|262402633|ref|ZP_06079194.1| excinuclease ABC subunit B [Vibrio sp. RC586] gi|262351415|gb|EEZ00548.1| excinuclease ABC subunit B [Vibrio sp. RC586] Length = 676 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ + Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFEPLTGVVTSRDLARFTV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIELIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATPG +EL + G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K ILYAD+ITKS++ A+DET RRREKQ +N++ I PQ +K + ++++ L Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAQYQVLTPQQLEKEISKLETVMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|114565819|ref|YP_752973.1| excinuclease ABC subunit B [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336754|gb|ABI67602.1| Excinuclease ABC subunit B [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 665 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/654 (55%), Positives = 479/654 (73%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y +GDQP AI QLL G+ + + Q LLGVTGSGKTFTMA++IE +QRPA+VMA Sbjct: 4 FKLHSSYKATGDQPQAIKQLLDGVAAGFRDQTLLGVTGSGKTFTMARIIEELQRPALVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LA QLYSEFK FFP NAVEYF+SYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH Sbjct: 64 PNKTLAGQLYSEFKQFFPDNAVEYFISYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LER D I+V+SVSCIYG+G+ E Y + V L+ G + + +LL LV Y+R Sbjct: 124 SATAGVLERRDVIIVASVSCIYGLGAPEDYYSLAVSLRPGMEIARDDLLRRLVDNHYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FR GD +EIFP+ + A RV FG++I+ I EF PL+G+ I I+ Sbjct: 184 DFSFFRGNFRARGDVVEIFPASSNENALRVEFFGDEIDRIIEFNPLSGEIIGRRLHSMIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT R + A I+EEL +L + EG+LLEAQRLEQR YDLEM+ G C+ Sbjct: 244 PASHFVTTRERMLEAAGQIEEELAQQLARFKMEGKLLEAQRLEQRTRYDLEMIREIGYCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+TGR PGEPP TL ++ P+D LLF+DESH+ +PQI GMY GD RK L ++ Sbjct: 304 GIENYSRYITGRAPGEPPYTLLDFFPDDFLLFIDESHIGVPQIRGMYEGDRSRKQNLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I VSATP +EL+ + EQIIRPTGL+DP VE Sbjct: 364 GFRLPSALDNRPLKFAEFQEKINQVIYVSATPADYELQHSVQ-VSEQIIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RS++ Q++D+ E ++G R+L+T LTKRMAEDLT+YL + ++VRYMHS++ L+ Sbjct: 423 VRSSQNQIDDLMAEARAVVEKGYRVLITTLTKRMAEDLTDYLADTGLKVRYMHSDIDALQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R+LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SL+QTIGRAAR Sbjct: 483 RLEILRELRSGVFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSTRSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YAD IT S++ AIDET RRR KQLE+N++H+I P+S+++ I ++ + E+ Sbjct: 543 NVEGKVIMYADEITLSMKSAIDETNRRRLKQLEYNREHHITPESIRKAIYAPVEATIAEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +I D Q+ +++++ + L+ + M+ AA+ L FE+AAR+RD I+ L+ Sbjct: 603 AVEYDIR-DFQK--MAREEREKLLREMEADMYRAAETLEFEKAARLRDSIRELQ 653 >gi|312962074|ref|ZP_07776569.1| excinuclease ABC subunit B [Pseudomonas fluorescens WH6] gi|311283626|gb|EFQ62212.1| excinuclease ABC subunit B [Pseudomonas fluorescens WH6] Length = 671 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/669 (54%), Positives = 485/669 (72%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI + RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ELL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK EL RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLMGAIEGIKVELAERLDYLRANNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P+D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRESGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G ++EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EIN R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEINKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AI ET RRR+KQ+ N ++ I P+ V + + +++ + Sbjct: 543 NLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGIIPKGVFKDVADIM------E 596 Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785 AT S ++ ++K ++ ++ L ++M+ A +L FE AA+ Sbjct: 597 GATVPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656 Query: 786 IRDEIKRLK 794 RDEI +L+ Sbjct: 657 TRDEIGKLR 665 >gi|116748247|ref|YP_844934.1| excinuclease ABC subunit B [Syntrophobacter fumaroxidans MPOB] gi|116697311|gb|ABK16499.1| Excinuclease ABC subunit B [Syntrophobacter fumaroxidans MPOB] Length = 691 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/663 (56%), Positives = 478/663 (72%), Gaps = 3/663 (0%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 S ++ F +Q+++ P+GDQP AI +L+ I + Q LLGVTGSGKTFTMA VI+ +++ Sbjct: 22 SSNMVSFSLQSNWPPTGDQPEAIDRLVTAIEKGVREQTLLGVTGSGKTFTMAHVIQRVRK 81 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P++V+APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+SSINE Sbjct: 82 PSLVVAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIAKDSSINET 141 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 ID+MRHSATRSLLER D I+V+SVSCIYG+GS E+Y M +QLK + ++++L LV+ Sbjct: 142 IDKMRHSATRSLLERRDVIIVASVSCIYGLGSPETYQDMQLQLKTNLRISREQVLRKLVE 201 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY+R D RGTFR GD +E+FP++ ED A R+ FG++++ I E PLTG+ +R + Sbjct: 202 IQYERSDDDFHRGTFRARGDVVEVFPAYEEDRALRIEFFGDEVDSIKEIDPLTGKTVRFL 261 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + IY +HYVT R L A+K I+ EL RL E +EG+L+EAQRLE+R DLEML Sbjct: 262 QRADIYPGTHYVTSRDNLERAVKAIQFELSERLEEFHREGKLVEAQRLEERTRLDLEMLL 321 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSR+L GR G P TL +Y P+D LLF+DESH+++PQI GMYRGD RK Sbjct: 322 ELGYCNGIENYSRHLDGRKAGSAPATLVDYFPDDWLLFIDESHISVPQIRGMYRGDRARK 381 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL YGFRLPS +DNRPL F E+ + VSATPG +EL + +VEQIIRPTGL Sbjct: 382 ETLVRYGFRLPSALDNRPLSFHEFEKKLRQAVYVSATPGPYELMKAGSHVVEQIIRPTGL 441 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 VDP +E+R A QV+D+ +I G R+L+T LTKRMAEDLTEYL E NIRVRYMHS Sbjct: 442 VDPRIEVRPADHQVDDLVGQIRRQVAAGRRVLVTTLTKRMAEDLTEYLVELNIRVRYMHS 501 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T+ERIE++RDLRLG++DVLVGINLLREGLDIPE LVAILDAD EGFLRS+ SLIQT Sbjct: 502 DINTVERIELVRDLRLGEYDVLVGINLLREGLDIPEVSLVAILDADNEGFLRSERSLIQT 561 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 GRAARNVN VILYA+ +T S++ AI+ET RRR QLE+N H I P++V++ I +++ Sbjct: 562 CGRAARNVNGSVILYANHVTDSMRRAIEETERRRRIQLEYNLAHGITPRTVEKDITDILA 621 Query: 735 PILLEDA-ATTNISIDAQQLSLSKKKGKA--HLKSLRKQMHLAADNLNFEEAARIRDEIK 791 DA A + + +A+ S G ++ L K M AA L FE AA +RD IK Sbjct: 622 DYRDRDAPAPPDFASEARAEFESAPAGSPDERIRQLEKAMKEAAAELEFERAAHLRDRIK 681 Query: 792 RLK 794 L+ Sbjct: 682 FLR 684 >gi|330817751|ref|YP_004361456.1| Excinuclease ABC, B subunit [Burkholderia gladioli BSR3] gi|327370144|gb|AEA61500.1| Excinuclease ABC, B subunit [Burkholderia gladioli BSR3] Length = 696 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/680 (54%), Positives = 488/680 (71%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVAFDGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDRIGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL E RL+EAQRLEQR + Sbjct: 253 RVRQKIVRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHSENRLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E+ + G EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEI-RVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPATTQVDDVLAEINERVKAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD +T S++ AIDET RRR KQ+ HN+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRMTDSMRRAIDETERRRAKQIAHNEKLGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYSADEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMVDYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLAVLRQRVFGANVGD 690 >gi|260769050|ref|ZP_05877984.1| excinuclease ABC subunit B [Vibrio furnissii CIP 102972] gi|260617080|gb|EEX42265.1| excinuclease ABC subunit B [Vibrio furnissii CIP 102972] Length = 676 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/669 (55%), Positives = 486/669 (72%), Gaps = 19/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI QLL G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSEYQPSGDQPEAIRQLLDGVDAGLAHQTLLGVTGSGKTFTLANVIAKAQRPTILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG K R++ + Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVECISIFDPLTGAIKQRDLPRFTV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A+++IK EL R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEHIKVELASRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSGNDIADQVVRPTGLLDPEL 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVID-- 734 RN+ + ILYAD ITKS++ A+DET RRREKQ +N+ I PQ++K + IME+ D Sbjct: 545 RNLEGRAILYADNITKSMKKAMDETNRRREKQQAYNEAMGIQPQALKRNVKDIMELGDIT 604 Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + L A T+ S D +++ ++ + + L QM+ A +L FE AA Sbjct: 605 KSRKQRTSKVVPLAKVAETSASYD----TMTPQQLEKEINKLEAQMYKHAQDLEFELAAE 660 Query: 786 IRDEIKRLK 794 RD+++ L+ Sbjct: 661 KRDQLEALR 669 >gi|76818802|ref|YP_337072.1| excinuclease ABC subunit B [Burkholderia pseudomallei 1710b] gi|124381502|ref|YP_001023842.1| excinuclease ABC subunit B [Burkholderia mallei NCTC 10229] gi|76583275|gb|ABA52749.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710b] gi|124289522|gb|ABM98791.1| excinuclease ABC, B subunit [Burkholderia mallei NCTC 10229] Length = 707 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 24 DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 83 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 84 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 203 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 263 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 323 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 384 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 442 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 443 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 502 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K I P+ V ++ Sbjct: 563 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 622 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 623 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 681 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 682 QTRDQLALLRERVFGANVGD 701 >gi|256822136|ref|YP_003146099.1| excinuclease ABC subunit B [Kangiella koreensis DSM 16069] gi|256795675|gb|ACV26331.1| excinuclease ABC, B subunit [Kangiella koreensis DSM 16069] Length = 662 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/660 (55%), Positives = 484/660 (73%), Gaps = 10/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI QLL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 5 FDIHSPFPPAGDQPKAIKQLLEGLEDGLSHQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK+SSINE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSSINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G +++ M++ LK+GD V+Q+ +L L + QY R Sbjct: 125 SATRALLERRDTIIVASVSAIYGLGDPKAFHSMVMHLKVGDEVDQRFILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + R T+RV GD I+I+P+ E A R+ +F +++E I F PLTG+ ++ + + ++ Sbjct: 185 EFDLQRATYRVRGDLIDIYPAESEKHAIRIELFDDEVETIQTFDPLTGEVLKRLTRVTVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R T+ A++ IK +LK RL + ++ +L+EAQRLEQR+ +D+EM++ G C Sbjct: 245 PKSHYVTSRQTILDAIEQIKVDLKERLAQFYEQNKLVEAQRLEQRVKFDIEMMQELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+G PGEPPP L +Y+P D+L+ +DESHVT+ QI MY+GD RK TL Y Sbjct: 305 GIENYSRYLSGAQPGEPPPCLLDYLPPDALMLIDESHVTVSQIGAMYKGDRSRKETLVNY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL+FEE+ + P T+ VSATPG +E E+ G IVEQ++RPTGL+DP VE Sbjct: 365 GFRLPAALDNRPLKFEEFERITPQTVFVSATPGKYE-EENTGQIVEQVVRPTGLIDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI+L ++ R+L+T LTKRMAEDLT+YL E RVRY+HS++ T+E Sbjct: 424 IRPVGTQVDDLLSEIHLRVEKNERVLVTTLTKRMAEDLTDYLSEHGARVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD IT S++ AI ET RRR Q E+N+KH I P V +KI +V+D Sbjct: 544 NLSGKAILYADRITGSMERAIGETNRRRAIQQEYNEKHGITPIGVSKKITDVMDT----- 598 Query: 741 AATTNISIDAQQLSLSKKKGKA----HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + A++LS K K A + + KQM A NL FE+AA++RDEI++L+ + Sbjct: 599 GHSKKSRKVAEKLSQYKVKSLADAVKEIAHMEKQMLEHAKNLEFEKAAKMRDEIQKLREA 658 >gi|77360053|ref|YP_339628.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis TAC125] gi|90111047|sp|Q3IKF4|UVRB_PSEHT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|76874964|emb|CAI86185.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas haloplanktis TAC125] Length = 664 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P+GDQP AIAQL +G+ + Q LLG TG+GKTFTMA +I + RP I+MA Sbjct: 5 FQLKSHFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV +DT+IEK++SINE I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ LK+G+ V+Q+++L L + QY R Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGT+RV G+ ++IFP+ A RV MF ++IE +S F PLTG +++ IY Sbjct: 185 DVDFSRGTYRVRGEVVDIFPAESSTFAIRVEMFDDEIERLSIFDPLTGAIEKHIVRTTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ I+EELK R +L +L+E QR+ QR YD+EM+ G C Sbjct: 245 PKTHYVTPREKILGAIEKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMRELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI MY+GD RK L EY Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS MDNRPLRFEE+ + P TI VSATPG +EL++C G I EQ+IRPTGL+DP +E Sbjct: 365 GFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELDRCVGAIAEQVIRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + ++G R+L+T LTKRM+EDLT+YL E N++VRY+HS++ T+E Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHNVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS S+IQT+GRAAR Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILY D ITKS+ A+DET RRRE Q +N +H I P S+ +KI++ +D + E Sbjct: 545 HLEGRAILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDSMD-VGEEA 603 Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 N+ + ++ LS K+ +K L +MH A +L FE+AA +RDEI L+ Sbjct: 604 GPKDNLRLIRKESKKVLSAKEITVQIKQLDSKMHAYASDLEFEKAASVRDEIHELQ 659 >gi|89900959|ref|YP_523430.1| excinuclease ABC subunit B [Rhodoferax ferrireducens T118] gi|89345696|gb|ABD69899.1| excinuclease ABC, B subunit [Rhodoferax ferrireducens T118] Length = 710 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/664 (55%), Positives = 485/664 (73%), Gaps = 7/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI QL++G++ E Q+LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 31 FELYQPYPPAGDQPEAINQLVEGVNDGEVFQILLGVTGSGKTFTMANVIARLGRPAIVFA 90 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 91 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 150 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+S+LER D ++V++VS IYGIG E+Y +M++ L++GD + Q+++++ LV+ QY+R Sbjct: 151 SCTKSVLERRDVVIVATVSAIYGIGQPEAYHKMVMTLRVGDKLGQRDMIAQLVRMQYQRN 210 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+IFP+ ++A RV +F ++IE + F PLTG+ + + +Y Sbjct: 211 DVDFSRGAFRVRGDTIDIFPAEHSEMAIRVELFDDEIESLQLFDPLTGRIRQKIPRFTVY 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + +A++ IK EL R+ E +G+L+EAQR+EQR +DLEML G C+ Sbjct: 271 PSSHYVTPREQVLSAVEAIKIELAERIKEFVGQGKLVEAQRIEQRTRFDLEMLSEVGHCK 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPP TL +Y+P+D+L+F+DESHV I Q MY GD RK TL EY Sbjct: 331 GIENYSRHLSGAAPGEPPATLTDYLPKDALMFLDESHVLIGQFGAMYNGDRSRKTTLVEY 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATP WE + G IVEQ++RPTGLVDP VE Sbjct: 391 GFRLPSALDNRPLKFEEFETRMRQAIFVSATPAQWEKDHA-GKIVEQLVRPTGLVDPEVE 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + ++ R+L+T LTKRMAE LT+YL + ++VRY+HS++ T+E Sbjct: 450 VRPAVNQVDDVLQEIRIRVEKHERVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 510 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ + ILYAD +T+S++ AI ET RRR KQ+ HN I P+S+ +++ ++ID + E Sbjct: 570 NLEGRAILYADKVTESMRKAIGETERRRVKQVTHNLAMGITPRSIVKQVKDLIDGVYSEK 629 Query: 741 AA--TTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + DA Q + +S+K +K L K M A NL FE+AAR+RD++ LK Sbjct: 630 AGQEAEKLERDAMQRAQVEDMSEKDISREIKRLEKLMMEHARNLEFEKAARVRDQLGILK 689 Query: 795 SSPY 798 + Sbjct: 690 EQAF 693 >gi|220904694|ref|YP_002480006.1| excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868993|gb|ACL49328.1| excinuclease ABC, B subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 678 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/665 (54%), Positives = 472/665 (70%), Gaps = 8/665 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F ++T Y P+GDQP AI +L+ + + Q+LLGVTGSGKTFTMA VI RPA+V Sbjct: 7 TPFSLETAYAPTGDQPGAINELVANLQAGVPAQVLLGVTGSGKTFTMANVIARCNRPALV 66 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLY EF+ FPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++ Sbjct: 67 LAPNKTLAAQLYGEFRALFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 126 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R D I+V+SVSCIYG+GS E Y++M+V +++G L++ LV+ Y+ Sbjct: 127 RHAATHALLTRRDVIIVASVSCIYGLGSPEYYAKMVVPVEVGQHFSMDRLITRLVEVHYE 186 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD++EI P++ + A R+ FG+DI+ + E PLTG+ + +V Sbjct: 187 RNDYDFHRGTFRVRGDALEIIPAYHHERALRLEFFGDDIDSMREIDPLTGEVLADVSKTV 246 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SH+V+ + L A I++EL RL ++G+L+EAQRLEQR DLEM+E G Sbjct: 247 IYPASHFVSAQDNLKRAAGDIRDELAERLTLFRQQGKLVEAQRLEQRTQLDLEMIEELGY 306 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENY+R+L GR GEPP L Y PED LLFVDESH+TIPQ+ GMY+GD RK TL Sbjct: 307 CNGIENYTRHLDGRVAGEPPSCLLNYFPEDFLLFVDESHITIPQVGGMYKGDRSRKQTLV 366 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS +DNRPL+F E+ L + VSATPG +E++Q QGI+ EQIIRPTGLVDP Sbjct: 367 DYGFRLPSALDNRPLQFNEFTALLNQVVYVSATPGKYEMDQAQGIVAEQIIRPTGLVDPM 426 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R + Q+ED+ E +G R+L+T LTKRMAEDLTEY +R RY+HS++ T Sbjct: 427 VEVRPTKGQMEDLLGECRGCVSRGERVLVTTLTKRMAEDLTEYCCNMGVRARYLHSDIDT 486 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER++IIR LRLG+FDVLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQT GRA Sbjct: 487 LERMQIIRALRLGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTFGRA 546 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV +VILYAD +T S++ A+ ET RRR +Q E+N++H I P S ++ + +D + + Sbjct: 547 ARNVQGRVILYADKVTDSMKAAMSETARRRTRQTEYNEEHGITPVSTRKSLESPLDSLYV 606 Query: 739 EDAAT--------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 ED A+ + DA L+ + + L K+M AA +L FE+AA++RD I Sbjct: 607 EDGASRGRGKGRGKSKGQDADASPLTAEDTALLVARLEKEMRQAARDLEFEQAAQLRDRI 666 Query: 791 KRLKS 795 + L++ Sbjct: 667 RVLRA 671 >gi|15642773|ref|NP_230664.1| excinuclease ABC subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 676 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/668 (55%), Positives = 482/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI Q P I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQLPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF ++IE IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATP +EL + G + EQ++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++ I PQ +K + ++++ L Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|307824855|ref|ZP_07655078.1| excinuclease ABC, B subunit [Methylobacter tundripaludum SV96] gi|307734213|gb|EFO05067.1| excinuclease ABC, B subunit [Methylobacter tundripaludum SV96] Length = 670 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 484/663 (73%), Gaps = 11/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI L++G+ E Q LLGVTGSGKTFT+A VI +QRPA++MA Sbjct: 5 FKLHSRFQPAGDQPTAIQALVEGLSDGEVHQTLLGVTGSGKTFTIANVINQVQRPAMIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DT+I+K+++INE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTFIDKDAAINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER+D IVV++VS IYG+G ESY +M++ L GD + Q+++L L + QY R Sbjct: 125 SATKALIERDDTIVVATVSAIYGLGEPESYFKMVLHLVKGDMINQRDILRRLAEMQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + R T+RV G+ I++FP+ + A R+ +F +++E +S F PLTG+ IR + IY Sbjct: 185 DIDLRRATYRVRGEVIDVFPAESDSEALRIELFDDEVERLSLFDPLTGEIIRRLARYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR L A++ IK ELK RL +L +L+EAQRLEQR +D+EM+ G C Sbjct: 245 PKSHYVTPREQLLEAVEAIKVELKERLEQLRSLDKLVEAQRLEQRTLFDIEMILEVGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GE PPT+F+Y+ +++L+ +DESHV +PQI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRSAGESPPTMFDYLRDNALVIIDESHVAVPQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ P I VSATPG +E E G+ EQ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLMFNEFELKAPQRIYVSATPGPYEREHS-GVFAEQVVRPTGLLDPVVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EIN R+L+T LTKRM+EDLTEYL E +RVRY+HS++ T+E Sbjct: 424 VRPATTQVDDLLSEINKRVVVKERVLVTTLTKRMSEDLTEYLMEHGVRVRYLHSDIDTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SL+QTIGRAAR Sbjct: 484 RVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSVVSLVQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D ITKS+Q AIDET RRREKQ + N +H+I P+++ + + +++ + + Sbjct: 544 NVNGKAILYGDKITKSMQQAIDETDRRREKQHQFNIEHHIEPKTIFKSVTDIMQ-VSIPG 602 Query: 741 AATT--NISIDA-------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A T N +D + +++ K+ LK L M+ A NL FE+AA+IRDEIK Sbjct: 603 AGMTSANKLLDKVAEFPADYKAAMTPKQASKKLKQLEDTMYQHAKNLEFEQAAKIRDEIK 662 Query: 792 RLK 794 L+ Sbjct: 663 VLQ 665 >gi|258621836|ref|ZP_05716867.1| excinuclease ABC subunit B [Vibrio mimicus VM573] gi|262171967|ref|ZP_06039645.1| excinuclease ABC subunit B [Vibrio mimicus MB-451] gi|258586067|gb|EEW10785.1| excinuclease ABC subunit B [Vibrio mimicus VM573] gi|261893043|gb|EEY39029.1| excinuclease ABC subunit B [Vibrio mimicus MB-451] Length = 676 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATPG +EL + G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K ILYAD+ITKS++ A+DET RRREKQ +N++ I PQ +K + ++++ L Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESATYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|149924580|ref|ZP_01912936.1| excinuclease ABC subunit B [Plesiocystis pacifica SIR-1] gi|149814546|gb|EDM74130.1| excinuclease ABC subunit B [Plesiocystis pacifica SIR-1] Length = 722 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/691 (53%), Positives = 486/691 (70%), Gaps = 27/691 (3%) Query: 128 SWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 W ++N + F + +++ P G QP AIA+L+ G+ + + Q+LLG+TGSGKTF Sbjct: 27 GWDLDNPVRPTIAADRPFTLVSEFEPRGSQPNAIAELVSGLDNGDADQVLLGITGSGKTF 86 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 T+A VI QRP +++A NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP TDT Sbjct: 87 TIANVIAKTQRPTLILAHNKTLAAQLYGEFKALFPDNAVEYFVSYYDYYQPEAYVPSTDT 146 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 YIEK+S+INEQIDRMRH+AT SLL R D I+V+SVSCI+GIGS E+Y MI + +G+ + Sbjct: 147 YIEKDSNINEQIDRMRHAATFSLLSRRDVIIVASVSCIFGIGSAEAYYGMIAPIAVGEEL 206 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 E+ LL LV QY+R D+ RGTFRV GD +E+FP++ +D A RV FG+++E I E Sbjct: 207 ERDVLLRRLVAMQYERNDVDFHRGTFRVRGDVVEVFPAYEDDTAVRVEFFGDEVEAIREI 266 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PL G +++ + I+ SHYVTP L A++ I+ EL+ RL EL RL+EAQRLE Sbjct: 267 DPLRGVTRGHMKRVTIFPASHYVTPASKLRAAIERIRGELQERLQELRANERLVEAQRLE 326 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 QR +DLEMLE G C IENYSR+LTGR G+ PPTL +Y P+D +L VDESHVT+PQ+ Sbjct: 327 QRCMFDLEMLEEMGRCSGIENYSRHLTGREAGQAPPTLLDYFPKDFMLVVDESHVTLPQV 386 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 MY+GD RK+TL E+GFRLPS +DNRPL+F+E++ I VSATPG++ELE+ G+ Sbjct: 387 RAMYKGDRARKSTLVEHGFRLPSALDNRPLQFDEFDERIAQAIYVSATPGNYELERTSGV 446 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 + EQIIRPTGL+DPP+E+R QV+D+ DEI + A + R+L+T LTKRMAEDLTEY Sbjct: 447 VTEQIIRPTGLLDPPIEMRPTAGQVDDLLDEIRVRADKDERVLVTTLTKRMAEDLTEYYA 506 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 + +RVRY+H++V TLER+ IIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEG Sbjct: 507 DLGVRVRYLHADVDTLERVAIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEG 566 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLR++ SL+QT GRAARNV+ +VI+YAD +T S++ A+DET RRR Q +N KH I P+ Sbjct: 567 FLRARRSLVQTCGRAARNVDGRVIMYADRVTDSMRAAMDETERRRTIQSAYNAKHGITPR 626 Query: 724 SVKEKIMEVIDPILLEDAATTNIS---------IDAQQLSLSKKKGKAH----------L 764 S + KI P+ E AA + A+QL + + + + Sbjct: 627 STRAKIT----PLEQERAAPGSAGGSAGKRGSKAAAKQLPVGLDRARDQDLLPSELPERI 682 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + L ++M A L +EEAA +RD I+ L++ Sbjct: 683 RELEQEMRALAKGLRYEEAATLRDRIRVLEA 713 >gi|320196726|gb|EFW71349.1| Excinuclease ABC subunit B [Escherichia coli WV_060327] Length = 673 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARCKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|190571138|ref|YP_001975496.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018542|ref|ZP_03334350.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357410|emb|CAQ54844.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995493|gb|EEB56133.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 644 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/655 (56%), Positives = 470/655 (71%), Gaps = 17/655 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI L+ G++S ++ Q+LLGVTGSGKTFTMA VI RPA++MA Sbjct: 3 FQIVTHFQPAGDQPQAIDNLVAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFPHNAV YF+SYYDYYQPEAY P+TDTYIEK+S INE+ID +R+ Sbjct: 63 HNKTLAAQLYEEMRGFFPHNAVGYFISYYDYYQPEAYSPQTDTYIEKDSLINERIDMLRY 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA SLLER D IVV+SVSCIYG+GS ESY M + L GD + + L++LV QYKR Sbjct: 123 SAICSLLERRDTIVVASVSCIYGLGSPESYLSMTLTLSAGDKIHVNDFLNNLVNLQYKRS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I+IFP++ E+ AWR+S+FG++IEEISE + IR ++T+ I+ Sbjct: 183 DVRFERGYFRVRGDIIDIFPAYYENKAWRLSLFGDEIEEISEIDAMNSNIIRCIDTVTIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NS+Y T R TL A++ IK+EL RL + +++EA+RLEQR +D+EM+ TG C+ Sbjct: 243 PNSYYTTSRETLLQAVQLIKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMMATGVCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G G+PPPTLFEY+P+D +LFVDESHVT+PQI MY G+ RK L +Y Sbjct: 303 GIENYSRYLYGMKAGDPPPTLFEYLPKDVILFVDESHVTVPQIGAMYSGNEARKKKLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EEW +RP TI VSATPG +ELE+ +EQ+IRPTGL DP Sbjct: 363 GFRLPSAFDNRPLKLEEWEAIRPQTIYVSATPGKYELEKTNHAFIEQVIRPTGLTDPICT 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ +QV+DV E + ++G IL+T LTK+MAE L E++ E +++V Y+HS++ LE Sbjct: 423 IKPTESQVDDVIHEAQVTIKKGFCILITTLTKKMAEKLAEHMSELSMKVTYLHSDIGALE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII LR + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RIEIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYAD IT S+ A+ ET RRR+KQ EHN HNI P++ I++ I L E Sbjct: 543 NVEGRVILYADKITNSMDRALKETERRRKKQTEHNTLHNIVPKT----IIKPISNTLQEK 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 N S D L SL+KQM A+NL FEEAA+I+ I+R + Sbjct: 599 VVIENFSKD-------------DLNSLKKQMLKHAENLEFEEAAKIKSIIERFNN 640 >gi|329295973|ref|ZP_08253309.1| excinuclease ABC subunit B [Plautia stali symbiont] Length = 673 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/662 (56%), Positives = 478/662 (72%), Gaps = 8/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +VMA Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++++NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+ RV +F ++E +S F PLTGQ I + IY Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDDIGLRVELFDEEVERLSLFDPLTGQVISVIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL +R L + +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELAVRRKVLLENNKLLEEQRIIQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRMRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLDPILE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRKRVEINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 NVN + ILYAD IT S+ A+ ET RRREKQ +N++ I PQ + +KI + ++ Sbjct: 545 NVNGRAILYADKITPSMARAMKETERRREKQQRYNEERGIVPQGLNKKITDTLELGKNVV 604 Query: 735 PILLEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + T I+ +A+ L+L+ + + + L QM A NL FEEAAR+RD++ Sbjct: 605 KTRGKGKTATRIAAEAEASYLALTPQAMQKKIHELEGQMQQHAQNLEFEEAARVRDQLHE 664 Query: 793 LK 794 L+ Sbjct: 665 LR 666 >gi|71281240|ref|YP_269592.1| excinuclease ABC subunit B [Colwellia psychrerythraea 34H] gi|90110881|sp|Q480C7|UVRB_COLP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71146980|gb|AAZ27453.1| excinuclease ABC, B subunit [Colwellia psychrerythraea 34H] Length = 673 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/660 (55%), Positives = 473/660 (71%), Gaps = 10/660 (1%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 ++Y PSGDQP AI QLL+GI S Q LLGVTGSGKT+T+A VIE + RP +++APNK Sbjct: 8 SEYTPSGDQPTAIKQLLEGIESGLAHQTLLGVTGSGKTYTIANVIEKLNRPTMMLAPNKT 67 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+NE I++MR SAT+ Sbjct: 68 LAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNEHIEQMRLSATK 127 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +LLER D I+++SVS IYG+G +SY +M++ + GD + Q+++L L + QY R D+ Sbjct: 128 ALLERRDVIIIASVSAIYGLGDPDSYLKMMLHISRGDIINQRDILRRLAELQYTRNDVAF 187 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 R T+RV GD I+IFP+ + +A RV +F +IE IS+F PLTGQ R ++ + +Y +H Sbjct: 188 ARATYRVRGDVIDIFPAESDRLALRVELFDEEIERISQFDPLTGQVERTLDRVTVYPKTH 247 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 Y TP+ + A+ IK ELK R +L+ +L+E QRL QR +D+EM+ G C IEN Sbjct: 248 YATPKEKIIAAVDKIKIELKHRSQQLKDNNKLVEEQRLTQRTQFDIEMMTELGYCSGIEN 307 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYL+GR G PPTLF+Y+P+D LL +DESHVT+PQI MY+GD RK L EYGFRL Sbjct: 308 YSRYLSGREEGGAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKENLVEYGFRL 367 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PS +DNRP++FEE+ + P TI VSATP +ELE+C I EQ++RPTGL+DP +E+R Sbjct: 368 PSALDNRPMKFEEFEAISPQTIYVSATPSKFELEKCGSDIAEQVVRPTGLLDPEIEVRPV 427 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 TQV+D+ EIN R+L T LTKRMAEDLT+YLY+ I+ RY+HS+V T+ER+EI Sbjct: 428 ETQVDDLLSEINKRLPLDERVLATTLTKRMAEDLTDYLYDHGIKARYLHSDVDTVERVEI 487 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 IRD RLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAARN+N Sbjct: 488 IRDFRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNG 547 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA--- 741 + ILY D IT S++ AIDET RRR KQ ++N +NI PQ V +I +V+ DA Sbjct: 548 RAILYGDRITGSMRRAIDETERRRVKQHQYNLDNNITPQGVVRRITDVMGVGSYSDAKSL 607 Query: 742 -----ATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A TN I+ A++ L+ + + L K M A NL FE+AA +RD+I +L+ Sbjct: 608 DKVAEANTNYHINQQAEEPLLTTSQIDTKIVELEKLMQGHAQNLEFEQAAAMRDKIAKLR 667 >gi|325518377|gb|EGC98099.1| excinuclease ABC subunit B [Burkholderia sp. TJI49] Length = 696 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IKEEL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQVAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLAEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AI ET RRR KQ+ +N++ I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTDSMKRAIGETERRRAKQIAYNEQMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|220917778|ref|YP_002493082.1| excinuclease ABC, B subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219955632|gb|ACL66016.1| excinuclease ABC, B subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 699 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/662 (54%), Positives = 473/662 (71%), Gaps = 17/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ + P+GDQP AI +L G+ E+ Q+LLGVTGSGKTFT+A V+ ++RP +V+A Sbjct: 3 FDLQSAFQPTGDQPRAITELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FP AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH Sbjct: 63 HNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL RND ++V+SVSCIYG+G+ E+Y ++ +L+ G + + SL+ QY+R Sbjct: 123 AATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+FP + ED A R+ FG+ +E I EF PL G + ++ + I+ Sbjct: 183 DLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGATLAELDKVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV+ A+ ++EEL+ RL EL+ +L+EAQRLEQR +DLEMLE G C Sbjct: 243 PNSHYVSAPEVRARAIAGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR G+PPP L +Y PED LL +DESH T+PQI MYRGD RK TL E+ Sbjct: 303 GIENYSRWLSGRKAGDPPPCLLDYFPEDFLLVIDESHQTVPQIGSMYRGDRSRKETLVEF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L I VSATP ++ELEQ QG++VEQ+IRPTGLVDP +E Sbjct: 363 GFRLPSALDNRPLKFEEFQALVRQAIYVSATPAAYELEQAQGVVVEQLIRPTGLVDPHIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +QV+D+ E+ A+ G R+L+T LTKRMAEDLTEY + +R RY+HS++ TLE Sbjct: 423 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IRDLR G+FDVL+GINLLREGLDIPE LVA+LDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSAVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD IT S++ AIDET RRRE Q +N +H I P +VK I D Sbjct: 543 NVNGRVLLYADAITASMRQAIDETGRRREIQERYNAEHGITPTTVKRNI---------SD 593 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + D + L+ ++G + + +L ++M AA L FE+AA++RD ++ Sbjct: 594 LGMAVVEADYVTVPLAAEEGAEYRPEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQA 653 Query: 793 LK 794 LK Sbjct: 654 LK 655 >gi|148977620|ref|ZP_01814196.1| excinuclease ABC subunit B [Vibrionales bacterium SWAT-3] gi|145963135|gb|EDK28403.1| excinuclease ABC subunit B [Vibrionales bacterium SWAT-3] Length = 676 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/669 (54%), Positives = 487/669 (72%), Gaps = 17/669 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY PSGDQP AI QLL G+ S Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 4 LFDLVSDYSPSGDQPTAITQLLDGLDSGLAHQTLLGVTGSGKTFTLANVISESQRPAILL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G +SY +M++ L G+ ++Q+++L L + QY R Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 D+ RG FRV G+ I+IFP+ + A R+ MF ++++ IS F PLTG K R++ Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A++ IK+EL+ R L+ +LLE QR+ QR +D+EM+ G Sbjct: 244 VYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GE PPTLF+Y+P+D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRP++F+E+ + P TI VSATPG++E+E+ G I +Q++RPTGL+DP Sbjct: 364 EFGFRLPSALDNRPMKFDEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVATQVDDLLSEIRIRSAKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ K ILY D+ITKS++ AIDET RRREKQ +N++ I PQ++K I ++++ L Sbjct: 544 ARNLEGKAILYGDSITKSMKKAIDETGRRREKQQAYNEEQGITPQALKRNIKDIME---L 600 Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785 D + ++Q+ LSK ++ + L M+ A NL FE AA+ Sbjct: 601 GDITKSKQKRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ 660 Query: 786 IRDEIKRLK 794 RDEI++L+ Sbjct: 661 KRDEIEQLR 669 >gi|324018557|gb|EGB87776.1| excinuclease ABC subunit B [Escherichia coli MS 117-3] Length = 673 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 482/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFNPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|262368546|ref|ZP_06061875.1| excinuclease ABC [Acinetobacter johnsonii SH046] gi|262316224|gb|EEY97262.1| excinuclease ABC [Acinetobacter johnsonii SH046] Length = 673 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/664 (56%), Positives = 475/664 (71%), Gaps = 10/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T+Y P+GDQP AI +L+ GI QLLLGVTGSGKT+TMA VI QRP IVMA Sbjct: 7 FDLVTNYQPAGDQPQAIEKLVAGIEKGYHDQLLLGVTGSGKTYTMANVIARTQRPTIVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 67 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D I+V+SVS IYG+G +Y M++ + GD + + +++ LV+ QY R Sbjct: 127 SATRSLLERRDAIIVASVSAIYGLGDPNAYMSMLLHIVQGDRIARDDIIRRLVEMQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F PLTG+ +R V + IY Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A+ I+EELK RL +LLEAQR+EQR YDLEM++ G Sbjct: 247 PKSHYVTPKDNLERAIGTIREELKERLGFFRAHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTLF+Y+P+D+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + P TI VSATP +ELE+ + I EQ++RPTGL+DP +E Sbjct: 367 GFRLPSALDNRPMQFEEWERITPATIYVSATPAKYELEKAEQ-IAEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+DV EIN+ R+L+T LTKRMAEDL+ YL E ++V Y+HS++ T+E Sbjct: 426 VRPVLTQVDDVLSEINIRKDLDERVLVTTLTKRMAEDLSSYLKEYGVKVAYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVKIIHDLRSGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 NV K ILY D IT S+Q AIDET RRREKQ+ N+ H I P+S + + ID +L Sbjct: 546 NVKGKAILYGDRITDSMQKAIDETARRREKQMAFNELHGIIPRSTIRQNKKDIDTGEVLT 605 Query: 739 EDAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +D + I S D Q L K HL L K+M A+ L FE+AAR+RDEI Sbjct: 606 DDQVESGITDQHQTLSADEQHLLSDPKLLAKHLSKLEKEMLKASKELQFEQAARLRDEIL 665 Query: 792 RLKS 795 RLK+ Sbjct: 666 RLKA 669 >gi|53717211|ref|YP_105572.1| excinuclease ABC subunit B [Burkholderia mallei ATCC 23344] gi|53721391|ref|YP_110376.1| excinuclease ABC subunit B [Burkholderia pseudomallei K96243] gi|121597246|ref|YP_991333.1| excinuclease ABC subunit B [Burkholderia mallei SAVP1] gi|126444347|ref|YP_001061605.1| excinuclease ABC subunit B [Burkholderia pseudomallei 668] gi|126456150|ref|YP_001074544.1| excinuclease ABC subunit B [Burkholderia pseudomallei 1106a] gi|166999231|ref|ZP_02265072.1| excinuclease ABC, B subunit [Burkholderia mallei PRL-20] gi|167722431|ref|ZP_02405667.1| excinuclease ABC subunit B [Burkholderia pseudomallei DM98] gi|167741413|ref|ZP_02414187.1| excinuclease ABC subunit B [Burkholderia pseudomallei 14] gi|167818595|ref|ZP_02450275.1| excinuclease ABC subunit B [Burkholderia pseudomallei 91] gi|167826973|ref|ZP_02458444.1| excinuclease ABC subunit B [Burkholderia pseudomallei 9] gi|167848488|ref|ZP_02473996.1| excinuclease ABC subunit B [Burkholderia pseudomallei B7210] gi|167905424|ref|ZP_02492629.1| excinuclease ABC subunit B [Burkholderia pseudomallei NCTC 13177] gi|167913717|ref|ZP_02500808.1| excinuclease ABC subunit B [Burkholderia pseudomallei 112] gi|167921658|ref|ZP_02508749.1| excinuclease ABC subunit B [Burkholderia pseudomallei BCC215] gi|226199184|ref|ZP_03794745.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237510637|ref|ZP_04523352.1| excinuclease ABC, B subunit [Burkholderia pseudomallei MSHR346] gi|242313742|ref|ZP_04812759.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106b] gi|254174417|ref|ZP_04881079.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 10399] gi|254187176|ref|ZP_04893690.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|254198958|ref|ZP_04905376.1| excinuclease ABC, B subunit [Burkholderia pseudomallei S13] gi|254200366|ref|ZP_04906731.1| excinuclease ABC, B subunit [Burkholderia mallei FMH] gi|254204391|ref|ZP_04910744.1| excinuclease ABC, B subunit [Burkholderia mallei JHU] gi|254264587|ref|ZP_04955452.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710a] gi|254355744|ref|ZP_04972024.1| excinuclease ABC, B subunit [Burkholderia mallei 2002721280] gi|262192882|ref|YP_001078108.2| excinuclease ABC subunit B [Burkholderia mallei NCTC 10247] gi|81823801|sp|Q62CK6|UVRB_BURMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|81824589|sp|Q63NE3|UVRB_BURPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|52211805|emb|CAH37804.1| excinuclease ABC subunit B [Burkholderia pseudomallei K96243] gi|52423181|gb|AAU46751.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 23344] gi|121225044|gb|ABM48575.1| excinuclease ABC, B subunit [Burkholderia mallei SAVP1] gi|126223838|gb|ABN87343.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 668] gi|126229918|gb|ABN93331.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106a] gi|147747978|gb|EDK55053.1| excinuclease ABC, B subunit [Burkholderia mallei FMH] gi|147753977|gb|EDK61041.1| excinuclease ABC, B subunit [Burkholderia mallei JHU] gi|148023837|gb|EDK82899.1| excinuclease ABC, B subunit [Burkholderia mallei 2002721280] gi|157934858|gb|EDO90528.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|160695463|gb|EDP85433.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 10399] gi|169657130|gb|EDS88524.1| excinuclease ABC, B subunit [Burkholderia pseudomallei S13] gi|225928783|gb|EEH24809.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pakistan 9] gi|235002842|gb|EEP52266.1| excinuclease ABC, B subunit [Burkholderia pseudomallei MSHR346] gi|242136981|gb|EES23384.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106b] gi|243064546|gb|EES46732.1| excinuclease ABC, B subunit [Burkholderia mallei PRL-20] gi|254215589|gb|EET04974.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710a] gi|261834989|gb|ABO02091.2| excinuclease ABC, B subunit [Burkholderia mallei NCTC 10247] Length = 696 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|261211944|ref|ZP_05926230.1| excinuclease ABC subunit B [Vibrio sp. RC341] gi|260838552|gb|EEX65203.1| excinuclease ABC subunit B [Vibrio sp. RC341] Length = 676 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ + Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVVTSRDLARFTV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKHELQIRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ G+PPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGQPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATPG +EL + G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K ILYAD+ITKS++ A+DET RRREKQ +N++ I PQ +K + ++++ L Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKPKNSKVVPLAKVAEESAVYQALTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|254467884|ref|ZP_05081290.1| excinuclease ABC, B subunit [beta proteobacterium KB13] gi|207086694|gb|EDZ63977.1| excinuclease ABC, B subunit [beta proteobacterium KB13] Length = 682 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/669 (55%), Positives = 485/669 (72%), Gaps = 8/669 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + PSGDQP AI QL+ GI+ EK Q LLGVTGSGKTFT+A VI RPAIVMA Sbjct: 14 YELALPFEPSGDQPKAIEQLIDGINRNEKFQTLLGVTGSGKTFTIANVIAQTGRPAIVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FFP+N+VEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 74 PNKTLAAQLYSEFKEFFPNNSVEYFVSYYDYYQPEAYVPARDLFIEKDSSINDHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER+D I+++SVS IYGIG Y M++ ++ G+ + Q+ ++ LV QY R Sbjct: 134 SATKALLERDDSIIIASVSAIYGIGDPVDYQGMVLHIQSGEKILQRNIVQRLVSMQYDRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD I+IFP+ + A R+SMF +++E ++ F PLTGQ ++ +Y Sbjct: 194 DFDFARGTFRVRGDVIDIFPAENSETALRISMFDDEVESLTLFDPLTGQLFNKIKRFTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IK EL R+ KE RL+EAQR+EQR +D+EML G C+ Sbjct: 254 PSSHYVTPRQTVVNAIEKIKVELHDRVNFYLKEKRLVEAQRIEQRTKFDIEMLNEIGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGE PPTL +Y+P+++L+F DESHVTIPQ+ GMY+GD RK L ++ Sbjct: 314 GIENYSRHLSGRGPGEAPPTLIDYLPDNTLMFFDESHVTIPQVGGMYKGDRARKENLVDF 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ L + VSATP +E ++ IIVEQ+ RPTGLVDP +E Sbjct: 374 GFRLPSAMDNRPLKFEEFENLMKQCVFVSATPADYE-DKHSKIIVEQVARPTGLVDPAIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A +QV+ + EI +Q R+L+T LTKRMAEDLT+YL E I+V+Y+HS++ T+E Sbjct: 433 VYPADSQVDHLLGEIKKTIEQENRVLVTTLTKRMAEDLTDYLIENGIKVKYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRL +FDVLVGINLLREGLDIPE GLVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 493 RVEIIRDLRLKEFDVLVGINLLREGLDIPEVGLVAVLDADKEGFLRSERSLIQTAGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VI YA+T TKS++ AI E TRRRE+Q+ +N ++NI P V++KI ++I+ + D Sbjct: 553 NLDGRVIFYANTETKSMKSAIKEMTRRRERQIAYNTENNITPAGVRKKIKDIIEKEI--D 610 Query: 741 AATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + IS ++ L++ K + L K M + NL FE+AA IRDEIK LK Sbjct: 611 TESFKISQSERKKYRKYEDLTEPKLIKEISKLEKSMQKFSKNLEFEKAAEIRDEIKFLKI 670 Query: 796 SPYFQGLDD 804 Y L D Sbjct: 671 KVYGPNLKD 679 >gi|309701055|emb|CBJ00353.1| UvrABC system protein B (excinuclease ABC subunit B) [Escherichia coli ETEC H10407] Length = 673 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGVMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|167897040|ref|ZP_02484442.1| excinuclease ABC subunit B [Burkholderia pseudomallei 7894] Length = 696 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLRLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|206560662|ref|YP_002231427.1| excinuclease ABC subunit B [Burkholderia cenocepacia J2315] gi|198036704|emb|CAR52603.1| excinuclease ABC subunit B [Burkholderia cenocepacia J2315] Length = 696 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL +EG+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHREGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLAVLRERVFGANVGD 690 >gi|15800530|ref|NP_286542.1| excinuclease ABC subunit B [Escherichia coli O157:H7 EDL933] gi|15830111|ref|NP_308884.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. Sakai] gi|16128747|ref|NP_415300.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli str. K-12 substr. MG1655] gi|74311323|ref|YP_309742.1| excinuclease ABC subunit B [Shigella sonnei Ss046] gi|82543226|ref|YP_407173.1| excinuclease ABC subunit B [Shigella boydii Sb227] gi|89107630|ref|AP_001410.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli str. K-12 substr. W3110] gi|91209808|ref|YP_539794.1| excinuclease ABC subunit B [Escherichia coli UTI89] gi|117622962|ref|YP_851875.1| excinuclease ABC subunit B [Escherichia coli APEC O1] gi|157155274|ref|YP_001461967.1| excinuclease ABC subunit B [Escherichia coli E24377A] gi|157160254|ref|YP_001457572.1| excinuclease ABC subunit B [Escherichia coli HS] gi|168757121|ref|ZP_02782128.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168764319|ref|ZP_02789326.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168767278|ref|ZP_02792285.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168779321|ref|ZP_02804328.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168786991|ref|ZP_02811998.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC869] gi|168799949|ref|ZP_02824956.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC508] gi|170020865|ref|YP_001725819.1| excinuclease ABC subunit B [Escherichia coli ATCC 8739] gi|170080438|ref|YP_001729758.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli str. K-12 substr. DH10B] gi|170682296|ref|YP_001742882.1| excinuclease ABC subunit B [Escherichia coli SMS-3-5] gi|187734131|ref|YP_001881035.1| excinuclease ABC subunit B [Shigella boydii CDC 3083-94] gi|188493976|ref|ZP_03001246.1| excinuclease ABC, B subunit [Escherichia coli 53638] gi|191169290|ref|ZP_03031040.1| excinuclease ABC, B subunit [Escherichia coli B7A] gi|193064410|ref|ZP_03045491.1| excinuclease ABC, B subunit [Escherichia coli E22] gi|193069360|ref|ZP_03050315.1| excinuclease ABC, B subunit [Escherichia coli E110019] gi|194428179|ref|ZP_03060722.1| excinuclease ABC, B subunit [Escherichia coli B171] gi|194438379|ref|ZP_03070469.1| excinuclease ABC, B subunit [Escherichia coli 101-1] gi|195936818|ref|ZP_03082200.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. EC4024] gi|208815343|ref|ZP_03256522.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208822169|ref|ZP_03262488.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209398352|ref|YP_002269448.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209918024|ref|YP_002292108.1| excinuclease ABC subunit B [Escherichia coli SE11] gi|215485867|ref|YP_002328298.1| excinuclease ABC subunit B [Escherichia coli O127:H6 str. E2348/69] gi|217324415|ref|ZP_03440499.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218553362|ref|YP_002386275.1| excinuclease ABC subunit B [Escherichia coli IAI1] gi|218557684|ref|YP_002390597.1| excinuclease ABC subunit B [Escherichia coli S88] gi|218694252|ref|YP_002401919.1| excinuclease ABC subunit B [Escherichia coli 55989] gi|218704156|ref|YP_002411675.1| excinuclease ABC subunit B [Escherichia coli UMN026] gi|238900038|ref|YP_002925834.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli BW2952] gi|253774218|ref|YP_003037049.1| excinuclease ABC subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160856|ref|YP_003043964.1| excinuclease ABC subunit B [Escherichia coli B str. REL606] gi|254791973|ref|YP_003076810.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. TW14359] gi|256021152|ref|ZP_05435017.1| excinuclease ABC subunit B [Shigella sp. D9] gi|256023626|ref|ZP_05437491.1| excinuclease ABC subunit B [Escherichia sp. 4_1_40B] gi|260843021|ref|YP_003220799.1| excinuclease UvrABC subunit UvrB [Escherichia coli O103:H2 str. 12009] gi|260854070|ref|YP_003227961.1| excinuclease UvrABC subunit UvrB [Escherichia coli O26:H11 str. 11368] gi|260866946|ref|YP_003233348.1| excinuclease UvrABC subunit UvrB [Escherichia coli O111:H- str. 11128] gi|261225426|ref|ZP_05939707.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli O157:H7 str. FRIK2000] gi|261258605|ref|ZP_05951138.1| excinuclease UvrABC subunit UvrB [Escherichia coli O157:H7 str. FRIK966] gi|291281776|ref|YP_003498594.1| UvrABC system protein B [Escherichia coli O55:H7 str. CB9615] gi|293404080|ref|ZP_06648074.1| excinuclease ABC subunit B [Escherichia coli FVEC1412] gi|293409157|ref|ZP_06652733.1| excinuclease ABC [Escherichia coli B354] gi|293414059|ref|ZP_06656708.1| excinuclease ABC [Escherichia coli B185] gi|293433040|ref|ZP_06661468.1| excinuclease ABC [Escherichia coli B088] gi|298379861|ref|ZP_06989466.1| UvrABC system protein B [Escherichia coli FVEC1302] gi|300816423|ref|ZP_07096645.1| excinuclease ABC subunit B [Escherichia coli MS 107-1] gi|300822938|ref|ZP_07103073.1| excinuclease ABC subunit B [Escherichia coli MS 119-7] gi|300898267|ref|ZP_07116618.1| excinuclease ABC subunit B [Escherichia coli MS 198-1] gi|300907106|ref|ZP_07124772.1| excinuclease ABC subunit B [Escherichia coli MS 84-1] gi|300920026|ref|ZP_07136485.1| excinuclease ABC subunit B [Escherichia coli MS 115-1] gi|300922802|ref|ZP_07138889.1| excinuclease ABC subunit B [Escherichia coli MS 182-1] gi|300929419|ref|ZP_07144888.1| excinuclease ABC subunit B [Escherichia coli MS 187-1] gi|300947141|ref|ZP_07161355.1| excinuclease ABC subunit B [Escherichia coli MS 116-1] gi|300957724|ref|ZP_07169912.1| excinuclease ABC subunit B [Escherichia coli MS 175-1] gi|301020730|ref|ZP_07184798.1| excinuclease ABC subunit B [Escherichia coli MS 69-1] gi|301024502|ref|ZP_07188178.1| excinuclease ABC subunit B [Escherichia coli MS 196-1] gi|301327971|ref|ZP_07221136.1| excinuclease ABC subunit B [Escherichia coli MS 78-1] gi|301646208|ref|ZP_07246104.1| excinuclease ABC subunit B [Escherichia coli MS 146-1] gi|306812820|ref|ZP_07447013.1| excinuclease ABC subunit B [Escherichia coli NC101] gi|307137402|ref|ZP_07496758.1| excinuclease ABC subunit B [Escherichia coli H736] gi|307313811|ref|ZP_07593428.1| excinuclease ABC, B subunit [Escherichia coli W] gi|309797956|ref|ZP_07692335.1| excinuclease ABC subunit B [Escherichia coli MS 145-7] gi|312967823|ref|ZP_07782036.1| excinuclease ABC, B subunit [Escherichia coli 2362-75] gi|312970853|ref|ZP_07785032.1| excinuclease ABC, B subunit [Escherichia coli 1827-70] gi|331641292|ref|ZP_08342427.1| excinuclease ABC subunit B [Escherichia coli H736] gi|331645996|ref|ZP_08347099.1| excinuclease ABC subunit B [Escherichia coli M605] gi|331651782|ref|ZP_08352801.1| excinuclease ABC subunit B [Escherichia coli M718] gi|331662134|ref|ZP_08363057.1| excinuclease ABC subunit B [Escherichia coli TA143] gi|331667142|ref|ZP_08368007.1| excinuclease ABC subunit B [Escherichia coli TA271] gi|331672291|ref|ZP_08373082.1| excinuclease ABC subunit B [Escherichia coli TA280] gi|331676513|ref|ZP_08377209.1| excinuclease ABC subunit B [Escherichia coli H591] gi|331682286|ref|ZP_08382905.1| excinuclease ABC subunit B [Escherichia coli H299] gi|332282378|ref|ZP_08394791.1| excision nuclease subunit B [Shigella sp. D9] gi|67474768|sp|P0A8F8|UVRB_ECOLI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|67474771|sp|P0A8F9|UVRB_ECO57 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|90111050|sp|Q324B3|UVRB_SHIBS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|90111052|sp|Q3Z405|UVRB_SHISS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|122424523|sp|Q1REF1|UVRB_ECOUT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037965|sp|A7ZJI8|UVRB_ECO24 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037966|sp|A7ZY35|UVRB_ECOHS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037967|sp|A1A921|UVRB_ECOK1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037968|sp|B1IXI9|UVRB_ECOLC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226695563|sp|B7MGN7|UVRB_ECO45 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226695565|sp|B7M751|UVRB_ECO8A RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226695566|sp|B7NA78|UVRB_ECOLU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226695567|sp|B1LM70|UVRB_ECOSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698334|sp|B5YRL8|UVRB_ECO5E RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698335|sp|B6I7T4|UVRB_ECOSE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|229557961|sp|B1X7A9|UVRB_ECODH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238691698|sp|B2TVF1|UVRB_SHIB3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764905|sp|B7ULX6|UVRB_ECO27 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764906|sp|B7LC61|UVRB_ECO55 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|259710324|sp|C4ZXV1|UVRB_ECOBW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|12513768|gb|AAG55150.1|AE005259_1 DNA repair; excision nuclease subunit B [Escherichia coli O157:H7 str. EDL933] gi|43286|emb|CAA27357.1| unnamed protein product [Escherichia coli] gi|1786996|gb|AAC73866.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli str. K-12 substr. MG1655] gi|13360316|dbj|BAB34280.1| excision nuclease subunit B [Escherichia coli O157:H7 str. Sakai] gi|73854800|gb|AAZ87507.1| DNA repair excision nuclease subunit B [Shigella sonnei Ss046] gi|81244637|gb|ABB65345.1| excision nuclease subunit B [Shigella boydii Sb227] gi|85674762|dbj|BAA35437.2| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli str. K12 substr. W3110] gi|91071382|gb|ABE06263.1| excision nuclease subunit B [Escherichia coli UTI89] gi|115512086|gb|ABJ00161.1| excision nuclease subunit B [Escherichia coli APEC O1] gi|157065934|gb|ABV05189.1| excinuclease ABC, B subunit [Escherichia coli HS] gi|157077304|gb|ABV17012.1| excinuclease ABC, B subunit [Escherichia coli E24377A] gi|169755793|gb|ACA78492.1| excinuclease ABC, B subunit [Escherichia coli ATCC 8739] gi|169888273|gb|ACB01980.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli str. K-12 substr. DH10B] gi|170520014|gb|ACB18192.1| excinuclease ABC, B subunit [Escherichia coli SMS-3-5] gi|187431123|gb|ACD10397.1| excinuclease ABC, B subunit [Shigella boydii CDC 3083-94] gi|188489175|gb|EDU64278.1| excinuclease ABC, B subunit [Escherichia coli 53638] gi|189002731|gb|EDU71717.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189355854|gb|EDU74273.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189363475|gb|EDU81894.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189365676|gb|EDU84092.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189373107|gb|EDU91523.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC869] gi|189377767|gb|EDU96183.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC508] gi|190900679|gb|EDV60478.1| excinuclease ABC, B subunit [Escherichia coli B7A] gi|192928872|gb|EDV82485.1| excinuclease ABC, B subunit [Escherichia coli E22] gi|192957313|gb|EDV87761.1| excinuclease ABC, B subunit [Escherichia coli E110019] gi|194413739|gb|EDX30018.1| excinuclease ABC, B subunit [Escherichia coli B171] gi|194422603|gb|EDX38600.1| excinuclease ABC, B subunit [Escherichia coli 101-1] gi|208731991|gb|EDZ80679.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208737654|gb|EDZ85337.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209159752|gb|ACI37185.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209776088|gb|ACI86356.1| excision nuclease subunit B [Escherichia coli] gi|209776090|gb|ACI86357.1| excision nuclease subunit B [Escherichia coli] gi|209776092|gb|ACI86358.1| excision nuclease subunit B [Escherichia coli] gi|209776094|gb|ACI86359.1| excision nuclease subunit B [Escherichia coli] gi|209776096|gb|ACI86360.1| excision nuclease subunit B [Escherichia coli] gi|209911283|dbj|BAG76357.1| DNA repair excision nuclease subunit B [Escherichia coli SE11] gi|215263939|emb|CAS08279.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli O127:H6 str. E2348/69] gi|217320636|gb|EEC29060.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218350984|emb|CAU96688.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli 55989] gi|218360130|emb|CAQ97679.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli IAI1] gi|218364453|emb|CAR02135.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli S88] gi|218431253|emb|CAR12130.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli UMN026] gi|238861048|gb|ACR63046.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli BW2952] gi|242376571|emb|CAQ31280.1| DNA repair; excision nuclease subunit B, subunit of UvrABC Nucleotide Excision Repair Complex [Escherichia coli BL21(DE3)] gi|253325262|gb|ACT29864.1| excinuclease ABC, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972757|gb|ACT38428.1| excinuclease ABC subunit B [Escherichia coli B str. REL606] gi|253976977|gb|ACT42647.1| excinuclease ABC subunit B [Escherichia coli BL21(DE3)] gi|254591373|gb|ACT70734.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli O157:H7 str. TW14359] gi|257752719|dbj|BAI24221.1| excinuclease UvrABC subunit UvrB [Escherichia coli O26:H11 str. 11368] gi|257758168|dbj|BAI29665.1| excinuclease UvrABC subunit UvrB [Escherichia coli O103:H2 str. 12009] gi|257763302|dbj|BAI34797.1| excinuclease UvrABC subunit UvrB [Escherichia coli O111:H- str. 11128] gi|260450074|gb|ACX40496.1| excinuclease ABC, B subunit [Escherichia coli DH1] gi|281177915|dbj|BAI54245.1| DNA repair excision nuclease subunit B [Escherichia coli SE15] gi|284920628|emb|CBG33690.1| UvrABC system protein B (excinuclease ABC subunit B) [Escherichia coli 042] gi|290761649|gb|ADD55610.1| UvrABC system protein B [Escherichia coli O55:H7 str. CB9615] gi|291323859|gb|EFE63281.1| excinuclease ABC [Escherichia coli B088] gi|291428666|gb|EFF01691.1| excinuclease ABC subunit B [Escherichia coli FVEC1412] gi|291434117|gb|EFF07090.1| excinuclease ABC [Escherichia coli B185] gi|291469625|gb|EFF12109.1| excinuclease ABC [Escherichia coli B354] gi|294493323|gb|ADE92079.1| excinuclease ABC, B subunit [Escherichia coli IHE3034] gi|298279559|gb|EFI21067.1| UvrABC system protein B [Escherichia coli FVEC1302] gi|299880355|gb|EFI88566.1| excinuclease ABC subunit B [Escherichia coli MS 196-1] gi|300315592|gb|EFJ65376.1| excinuclease ABC subunit B [Escherichia coli MS 175-1] gi|300358056|gb|EFJ73926.1| excinuclease ABC subunit B [Escherichia coli MS 198-1] gi|300398541|gb|EFJ82079.1| excinuclease ABC subunit B [Escherichia coli MS 69-1] gi|300401151|gb|EFJ84689.1| excinuclease ABC subunit B [Escherichia coli MS 84-1] gi|300412973|gb|EFJ96283.1| excinuclease ABC subunit B [Escherichia coli MS 115-1] gi|300420906|gb|EFK04217.1| excinuclease ABC subunit B [Escherichia coli MS 182-1] gi|300453219|gb|EFK16839.1| excinuclease ABC subunit B [Escherichia coli MS 116-1] gi|300462619|gb|EFK26112.1| excinuclease ABC subunit B [Escherichia coli MS 187-1] gi|300524479|gb|EFK45548.1| excinuclease ABC subunit B [Escherichia coli MS 119-7] gi|300531113|gb|EFK52175.1| excinuclease ABC subunit B [Escherichia coli MS 107-1] gi|300845536|gb|EFK73296.1| excinuclease ABC subunit B [Escherichia coli MS 78-1] gi|301075545|gb|EFK90351.1| excinuclease ABC subunit B [Escherichia coli MS 146-1] gi|305853583|gb|EFM54022.1| excinuclease ABC subunit B [Escherichia coli NC101] gi|306906451|gb|EFN36965.1| excinuclease ABC, B subunit [Escherichia coli W] gi|307627812|gb|ADN72116.1| excinuclease ABC subunit B [Escherichia coli UM146] gi|308118444|gb|EFO55706.1| excinuclease ABC subunit B [Escherichia coli MS 145-7] gi|310336614|gb|EFQ01781.1| excinuclease ABC, B subunit [Escherichia coli 1827-70] gi|312287549|gb|EFR15456.1| excinuclease ABC, B subunit [Escherichia coli 2362-75] gi|315060015|gb|ADT74342.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli W] gi|315135429|dbj|BAJ42588.1| UvrABC system protein B [Escherichia coli DH1] gi|315257765|gb|EFU37733.1| excinuclease ABC subunit B [Escherichia coli MS 85-1] gi|315287196|gb|EFU46608.1| excinuclease ABC subunit B [Escherichia coli MS 110-3] gi|315619778|gb|EFV00297.1| excinuclease ABC, B subunit [Escherichia coli 3431] gi|320175200|gb|EFW50309.1| Excinuclease ABC subunit B [Shigella dysenteriae CDC 74-1112] gi|320183268|gb|EFW58123.1| Excinuclease ABC subunit B [Shigella flexneri CDC 796-83] gi|320192747|gb|EFW67388.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. EC1212] gi|320198968|gb|EFW73565.1| Excinuclease ABC subunit B [Escherichia coli EC4100B] gi|320637640|gb|EFX07432.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. G5101] gi|320642767|gb|EFX11968.1| excinuclease ABC subunit B [Escherichia coli O157:H- str. 493-89] gi|320648223|gb|EFX16878.1| excinuclease ABC subunit B [Escherichia coli O157:H- str. H 2687] gi|320654060|gb|EFX22128.1| excinuclease ABC subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659683|gb|EFX27239.1| excinuclease ABC subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320664153|gb|EFX31304.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. LSU-61] gi|323155700|gb|EFZ41871.1| excinuclease ABC, B subunit [Escherichia coli EPECa14] gi|323159708|gb|EFZ45686.1| excinuclease ABC, B subunit [Escherichia coli E128010] gi|323165696|gb|EFZ51482.1| excinuclease ABC, B subunit [Shigella sonnei 53G] gi|323172105|gb|EFZ57744.1| excinuclease ABC, B subunit [Escherichia coli LT-68] gi|323175603|gb|EFZ61198.1| excinuclease ABC, B subunit [Escherichia coli 1180] gi|323185066|gb|EFZ70432.1| excinuclease ABC, B subunit [Escherichia coli 1357] gi|323190905|gb|EFZ76172.1| excinuclease ABC, B subunit [Escherichia coli RN587/1] gi|323379426|gb|ADX51694.1| excinuclease ABC, B subunit [Escherichia coli KO11] gi|323938267|gb|EGB34526.1| excinuclease ABC [Escherichia coli E1520] gi|323947064|gb|EGB43077.1| excinuclease ABC [Escherichia coli H120] gi|323953558|gb|EGB49424.1| excinuclease ABC [Escherichia coli H252] gi|323958068|gb|EGB53777.1| excinuclease ABC [Escherichia coli H263] gi|323963026|gb|EGB58597.1| excinuclease ABC [Escherichia coli H489] gi|326338335|gb|EGD62164.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. 1125] gi|326346313|gb|EGD70051.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. 1044] gi|330910524|gb|EGH39034.1| excinuclease ABC subunit B [Escherichia coli AA86] gi|331038090|gb|EGI10310.1| excinuclease ABC subunit B [Escherichia coli H736] gi|331044748|gb|EGI16875.1| excinuclease ABC subunit B [Escherichia coli M605] gi|331050060|gb|EGI22118.1| excinuclease ABC subunit B [Escherichia coli M718] gi|331060556|gb|EGI32520.1| excinuclease ABC subunit B [Escherichia coli TA143] gi|331065498|gb|EGI37391.1| excinuclease ABC subunit B [Escherichia coli TA271] gi|331070486|gb|EGI41850.1| excinuclease ABC subunit B [Escherichia coli TA280] gi|331075202|gb|EGI46500.1| excinuclease ABC subunit B [Escherichia coli H591] gi|331079917|gb|EGI51096.1| excinuclease ABC subunit B [Escherichia coli H299] gi|332097545|gb|EGJ02525.1| excinuclease ABC, B subunit [Shigella boydii 3594-74] gi|332104730|gb|EGJ08076.1| excision nuclease subunit B [Shigella sp. D9] gi|332342111|gb|AEE55445.1| excinuclease ABC, B subunit UvrB [Escherichia coli UMNK88] Length = 673 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|325498050|gb|EGC95909.1| excinuclease ABC subunit B [Escherichia fergusonii ECD227] Length = 673 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPVVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|258627130|ref|ZP_05721926.1| excinuclease ABC subunit B [Vibrio mimicus VM603] gi|258580648|gb|EEW05601.1| excinuclease ABC subunit B [Vibrio mimicus VM603] Length = 676 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATPG +EL + G + +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSCGEVADQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E + A RIL+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K ILYAD+ITKS++ A+DET RRREKQ +N++ I PQ +K + ++++ L Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A + +++ + L+K ++ + + L M+ A NL FE AA+ Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESATYRVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 662 RDEIHQLR 669 >gi|324009635|gb|EGB78854.1| excinuclease ABC subunit B [Escherichia coli MS 57-2] Length = 673 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYFPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|121308596|dbj|BAF43690.1| excision nuclease subunit B [Photobacterium phosphoreum] Length = 675 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/670 (55%), Positives = 485/670 (72%), Gaps = 20/670 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY P+GDQP AI QL+ G+ S Q LLGVTGSGKTFT+A VI RP ++M Sbjct: 4 LFNLVSDYSPAGDQPTAIEQLMDGLDSGLAQQTLLGVTGSGKTFTIANVIAQANRPTLIM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E ++FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMRDFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+++SVS IYG+G ESY +M++ ++ GD ++Q+++L L + QYKR Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPESYLKMMLHVRRGDVLDQRDILRRLAELQYKR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378 D RGTFRV G+ I+IFP+ E A R+ +F ++E IS F PLTG I RN+ Sbjct: 184 NDAVFERGTFRVRGEVIDIFPAESEKEAIRLELFDGEVEVISSFDPLTGAIIQRNLARTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK EL R +L +L+E QR+ QR +D+EM+ G Sbjct: 244 IYPKTHYVTPREKILDAIEGIKLELTQRKQQLLDNNKLVEEQRISQRTQFDIEMMNELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+ QI M+RGD RK L Sbjct: 304 CSGIENYSRYLSGRTEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMFRGDRSRKENLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRP++FEE+ L P TI VSATPG++E+E+ G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGGDIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI++ + + R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVATQVDDLLSEIHIRSAKQERVLVTTLTKRMSEDLTEYLTEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRA Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ K ILY D IT S++ AI+ET RRREKQ+ +N +HNI PQ + +KI + LL Sbjct: 544 ARNIEGKAILYGDRITGSMERAINETQRRREKQIIYNLEHNIIPQKLNKKIGD-----LL 598 Query: 739 EDAATT------NISIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAA 784 E A + N + D +++ SK ++ + ++ L KQM+ A NL FE+AA Sbjct: 599 ELGAPSGRSKSRNKAADLHKVAESKGTYSVLTPQQLELEIQRLEKQMYDFAQNLEFEQAA 658 Query: 785 RIRDEIKRLK 794 RD+I +L+ Sbjct: 659 DTRDKIHQLR 668 >gi|218699151|ref|YP_002406780.1| excinuclease ABC subunit B [Escherichia coli IAI39] gi|300939813|ref|ZP_07154451.1| excinuclease ABC subunit B [Escherichia coli MS 21-1] gi|226695564|sp|B7NNK9|UVRB_ECO7I RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|218369137|emb|CAR16892.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli IAI39] gi|300455345|gb|EFK18838.1| excinuclease ABC subunit B [Escherichia coli MS 21-1] Length = 673 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|331656796|ref|ZP_08357758.1| excinuclease ABC subunit B [Escherichia coli TA206] gi|331055044|gb|EGI27053.1| excinuclease ABC subunit B [Escherichia coli TA206] Length = 673 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADIQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|237807887|ref|YP_002892327.1| excinuclease ABC subunit B [Tolumonas auensis DSM 9187] gi|237500148|gb|ACQ92741.1| excinuclease ABC, B subunit [Tolumonas auensis DSM 9187] Length = 669 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/662 (54%), Positives = 478/662 (72%), Gaps = 11/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP AIA+LL GI + Q LLGVTGSGKTFTMA VI + RP +++A Sbjct: 5 FKLESQFQPAGDQPEAIARLLDGIDAGLAHQTLLGVTGSGKTFTMANVIAKLNRPTMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+++INE I++MR Sbjct: 65 PNKTLAAQLYGEMREFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G ++Y M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLRQGDIINQRDILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ + +A RV +F +IE +S F PLTG + + ++ Sbjct: 185 DAVFQRATFRVRGEVIDIFPAESDKLALRVELFDEEIERLSLFDPLTGAVEKVIPRFTVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A+ IK EL R +L +LLE QRL QR +D+EM++ G C Sbjct: 245 PKSHYVTPRDTILQAIDTIKVELAERREQLLSANKLLEEQRLTQRTLFDIEMMQELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRATGEPPPTLFDYLPADGLLIIDESHVTVPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L P TI VSATP ++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFDEFEALMPQTIFVSATPAAYELEKSGGDVVQQVVRPTGLLDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L + R+L+T LTKRM+EDLTEYL+E +RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRLRVKLNERVLVTTLTKRMSEDLTEYLHEHGVRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S++ AIDET RRR Q N +H I P+ + +K+++V+ L Sbjct: 545 NLNGKAILYGDRITNSMKTAIDETHRRRAVQQAFNLEHGITPKGLNKKVVDVMQ---LGG 601 Query: 741 AATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +A++++ L K+ +K L QM A NL FE+AA +RD+I Sbjct: 602 VSSKTQGKNAKKVAEPGAHYQWLHPKELAKEIKRLENQMFEHARNLEFEQAATLRDQIHE 661 Query: 793 LK 794 L+ Sbjct: 662 LQ 663 >gi|227884259|ref|ZP_04002064.1| excinuclease ABC subunit B [Escherichia coli 83972] gi|300993254|ref|ZP_07180301.1| excinuclease ABC subunit B [Escherichia coli MS 45-1] gi|301051303|ref|ZP_07198129.1| excinuclease ABC subunit B [Escherichia coli MS 185-1] gi|227839011|gb|EEJ49477.1| excinuclease ABC subunit B [Escherichia coli 83972] gi|300297062|gb|EFJ53447.1| excinuclease ABC subunit B [Escherichia coli MS 185-1] gi|300406662|gb|EFJ90200.1| excinuclease ABC subunit B [Escherichia coli MS 45-1] gi|307552624|gb|ADN45399.1| UvrABC system protein B [Escherichia coli ABU 83972] gi|315292637|gb|EFU51989.1| excinuclease ABC subunit B [Escherichia coli MS 153-1] Length = 673 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLMEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|237707263|ref|ZP_04537744.1| excision nuclease subunit B [Escherichia sp. 3_2_53FAA] gi|226898473|gb|EEH84732.1| excision nuclease subunit B [Escherichia sp. 3_2_53FAA] Length = 673 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGELIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|222032510|emb|CAP75249.1| UvrABC system protein B [Escherichia coli LF82] gi|312945297|gb|ADR26124.1| excinuclease ABC subunit B [Escherichia coli O83:H1 str. NRG 857C] gi|315299290|gb|EFU58542.1| excinuclease ABC subunit B [Escherichia coli MS 16-3] Length = 673 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKLRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|218549657|ref|YP_002383448.1| excinuclease ABC subunit B [Escherichia fergusonii ATCC 35469] gi|226695483|sp|B7LJY3|UVRB_ESCF3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|218357198|emb|CAQ89833.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia fergusonii ATCC 35469] gi|323976839|gb|EGB71927.1| excinuclease ABC [Escherichia coli TW10509] gi|324114343|gb|EGC08312.1| excinuclease ABC [Escherichia fergusonii B253] Length = 673 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|157962172|ref|YP_001502206.1| excinuclease ABC subunit B [Shewanella pealeana ATCC 700345] gi|157847172|gb|ABV87671.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345] Length = 667 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/666 (53%), Positives = 485/666 (72%), Gaps = 18/666 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ Y P+GDQP AI +L++G+ S Q LLGVTGSGKTFT+A VI M RP I+ Sbjct: 4 SVFQLESMYKPAGDQPTAINKLVEGLESGVACQTLLGVTGSGKTFTVANVIAKMSRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G ++Y +M++ L+ G ++EQ+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I+IFP+ + A R+ +F ++IE +S F PLTG ++ + I Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPADSDKNAIRIELFDDEIERLSLFDPLTGHVVKRIARIT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y SHYVTPR ++ A + IK+EL+ R +L + +L+E QR+ +R+ YD+EM+ G Sbjct: 244 VYPKSHYVTPRESILAATEDIKQELRDRKKQLLELNKLIEEQRITERVQYDVEMMTELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR PG+ PPTL +Y+P+D LL +DESHVT+PQI MY+GD RK L Sbjct: 304 CSGIENYSRYLSGRAPGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P +I VSATP +E+++ G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSDYEIDKSDGEIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ EI R+L+T LTKRM+EDL+EYL E ++VRY+HS++ T Sbjct: 424 IEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG FDVL+GINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+N KVILY D ITKS+ AI ET RRREKQ ++N + I P+ V ++I +V+D Sbjct: 544 ARNINGKVILYGDRITKSMDKAITETNRRREKQHQYNLDNGITPKGVVKRITDVMD---- 599 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRD 788 + +D+++ +++K+G H+ L KQMH A NL FEEAA +RD Sbjct: 600 ---VGDHQYVDSER-GVAEKEGGYHVAKPADISHDIDRLEKQMHEHAKNLEFEEAAAVRD 655 Query: 789 EIKRLK 794 ++ RL+ Sbjct: 656 QVSRLR 661 >gi|297170618|gb|ADI21644.1| helicase subunit of the DNA excision repair complex [uncultured myxobacterium HF0130_06F04] Length = 666 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/653 (56%), Positives = 485/653 (74%), Gaps = 10/653 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++ P+GDQP+A+ L+ G + + Q+LLGVTGSGKTFT+A I +Q P +V+A Sbjct: 10 FILCAEFAPAGDQPSALESLVPGFAAPKSHQVLLGVTGSGKTFTVASAISQLQIPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP TDT+I+K+++IN+ IDRMRH Sbjct: 70 HNKTLAAQLYEEFKSFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIDKDATINDAIDRMRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L ERND I+VSSVSCIYG+GS E+Y M ++L +GD +++ E+L L Q++R Sbjct: 130 SATQALFERNDVIIVSSVSCIYGLGSAEAYYGMHLKLNVGDLIDRDEVLLKLANIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +E+FP+H + A+R+ FG++IE I+ PL G KIR+V+ + I+ Sbjct: 190 DTDFHRGTFRVRGDVVEVFPAHQFEQAYRIEWFGDEIESIAVVDPLRGVKIRDVDKVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + + A I++EL+ RLI+L KE +L+EAQRLEQR +DLEM+E G C Sbjct: 250 PTSHYVVTPESRDRATNAIRDELRERLIQLRKENKLVEAQRLEQRTLFDLEMIEEMGYCT 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR G PPPTL +Y+ ++ LL +DESH T+PQ+ MYRGD RK L + Sbjct: 310 GIENYSRHLTGRPSGLPPPTLVDYLGKEFLLVIDESHQTVPQLGAMYRGDRARKENLVNF 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L + VSATPG +ELE QG+IVEQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLQFEEFRKLTDRVLYVSATPGDFELEDTQGVIVEQIIRPTGLIDPQID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ +EI + + R+L+TVLTKRMAEDLTEY + +RVRY+HS++ TLE Sbjct: 430 IRPVNNQVDDLLEEIRVRESRQERVLVTVLTKRMAEDLTEYYADVGVRVRYLHSDIDTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI++I DLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RIQVIHDLRAGQFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 +V K ILYAD +T+SIQ A+DET RRR+KQ +N+ +NI P++V+ K+++ DP Sbjct: 550 HVEGKAILYADRMTQSIQRAVDETVRRRQKQETYNQDNNITPKTVQRKLLQFKAGEDP-- 607 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A TT+ SID + K +++LRK+M A++L FE+AA +RD++ Sbjct: 608 ---ADTTSPSIDPTH--IEPDKLPKEIEALRKKMLDYAESLEFEKAAELRDQV 655 >gi|85058885|ref|YP_454587.1| excinuclease ABC subunit B [Sodalis glossinidius str. 'morsitans'] gi|84779405|dbj|BAE74182.1| excision nuclease subunit B [Sodalis glossinidius str. 'morsitans'] Length = 669 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/658 (56%), Positives = 474/658 (72%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VIE + RP +V+A Sbjct: 5 FKLVSSFEPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIEDLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G ++Y +M++ L G V Q+ +++ L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMLVSQRSIVNRLSELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ ++VA RV +F +++E +S F PLTG + V IY Sbjct: 185 DQAFQRCTFRVRGEVIDIFPAESDEVALRVELFDDEVERLSLFDPLTGHVDQEVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L AM+ IK EL R L G+LLE QRL QR +DLEM+ G C Sbjct: 245 PKNHYVTPRERLVQAMEDIKVELAERRESLLASGKLLEEQRLSQRTAFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ + P TI VSATPG +ELE C I++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFAAMAPQTIYVSATPGPYELEMCGNDIIDQLVRPTGLLDPQIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI Q R+L+T LTKRMAEDLTEYL E RVRY+HS+++T+E Sbjct: 425 VRPVSTQVDDLLSEIRRRVQINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIETVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVVILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736 N+N K ILY D IT S+ AI+ET RRREKQ +N + I PQ++ ++I ++++ P+ Sbjct: 545 NLNGKAILYGDKITPSMARAIEETERRREKQHAYNLANGIVPQALNKRIADIMELGQSPV 604 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + A+ L+ K + ++ L +M A NL FEEAA +RD+I L+ Sbjct: 605 HDKHKKRKAMEAAAKYGDLTPKALEQKIRELETRMQQHAQNLEFEEAASVRDQIHALR 662 >gi|323967375|gb|EGB62796.1| excinuclease ABC [Escherichia coli M863] gi|327253561|gb|EGE65190.1| excinuclease ABC, B subunit [Escherichia coli STEC_7v] Length = 673 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|78224410|ref|YP_386157.1| excinuclease ABC subunit B [Geobacter metallireducens GS-15] gi|78195665|gb|ABB33432.1| Excinuclease ABC subunit B [Geobacter metallireducens GS-15] Length = 665 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/654 (55%), Positives = 471/654 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + +DY P GDQP AI +L +GI ++ Q+LLGVTGSGKTFTMA VI A RPA+V+A Sbjct: 4 YTLVSDYTPRGDQPRAIEELSEGILRGDRHQVLLGVTGSGKTFTMANVIAATNRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FPHNAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH Sbjct: 64 PNKTLAAQLYGEFKELFPHNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLL R D I+V+SVSCIYGIGS Y M + G+ + LL LV+ QY+R Sbjct: 124 AATRSLLTRQDVIIVASVSCIYGIGSPAEYQAMHIFFHEGEEYGRDTLLRKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+H ++ A R+ FG+ +E ISE PL G + + +Y Sbjct: 184 DIDFHRGTFRVRGDIVEIFPAHEDEKALRIEFFGDAVEAISEIDPLRGVAHQRLAKCAVY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R TL A++ I+ L+ R+ + L+EAQRLEQR +DLEM+E G CQ Sbjct: 244 PASHYVATRETLERAIEEIRVALRERIQWFRERNMLVEAQRLEQRTMFDLEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y P+D LLFVDESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRHFDGRAPGEPPYTLLDYFPKDFLLFVDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ TI VSATP +EL+Q G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLTFQEFTARLNQTIYVSATPADYELQQAGGVVVEQVIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E+ +G R+L+T LTKRMAE+LT+Y + +RVRY+HS++ T++ Sbjct: 424 VRPAAGQVDDLLHEVRETVARGERVLVTTLTKRMAEELTDYYRDLGVRVRYLHSDIDTIQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V +YAD +T S++ I+ET RRR Q N +HNI P++VK+ + +++ I D Sbjct: 544 NVNGRVTMYADAVTGSMEACIEETARRRTIQEAFNTEHNITPRTVKKGLRTILESIEERD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ + Q+ + + +K LRK+M +A NL FE+AA +RD IK L+ Sbjct: 604 YYTIPLAAEPQEEYVPADEIPKLVKRLRKEMLASAKNLEFEKAAELRDRIKNLE 657 >gi|307266010|ref|ZP_07547557.1| excinuclease ABC, B subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306918972|gb|EFN49199.1| excinuclease ABC, B subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 661 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/660 (55%), Positives = 485/660 (73%), Gaps = 15/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA +I+ + RP +V+A Sbjct: 4 FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++ L+ G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ + A RV +FG++I+ I+E LTG+ + + + I+ Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A+K I+EEL+ R EL+ G+++EA+RL QR YDLEML+ G CQ Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK L EY Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +E+E + +VEQ+IRPTGLVDP V Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + QV+D+ EI +G R+L+T LTK+MAEDLT+YL + I+V+Y+HS+++T+E Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+ Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T+++ + Q+ + K K K+ ++ L K+M AA L FE+AA++RD I LK Sbjct: 597 --ATHVAEEEQKYTRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654 >gi|330810809|ref|YP_004355271.1| UvrABC system protein B (Excinuclease ABC, subunit B) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378917|gb|AEA70267.1| UvrABC system protein B (Excinuclease ABC, subunit B) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 671 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/669 (55%), Positives = 486/669 (72%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI +++GI + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK EL+ RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ R+L+T LTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEISKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AI ET RRR+KQ+ N + I P+ V + + +++ + Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIM------E 596 Query: 741 AATTNISIDAQQLSLSK-----KKGKAHLKS----------LRKQMHLAADNLNFEEAAR 785 AT S ++ ++K + +A L+S L ++M+ A +L FE AA+ Sbjct: 597 GATVPGSRSKKRKGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656 Query: 786 IRDEIKRLK 794 +RDEI +L+ Sbjct: 657 LRDEIGKLR 665 >gi|119713691|gb|ABL97741.1| excinuclease ABC B subunit [uncultured marine bacterium EB0_41B09] Length = 678 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/670 (55%), Positives = 482/670 (71%), Gaps = 10/670 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P+GDQP AI L+ G+++ EK Q LLGVTGSGKTFT+A VI +P+IVMA Sbjct: 10 FILNQPFKPAGDQPKAINSLVDGVNNNEKFQTLLGVTGSGKTFTIANVIAQTGKPSIVMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF++FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 70 PNKTLAAQLYSEFRDFFPQNAVEYFVSYYDYYQPEAYVPGRDVFIEKDSSINDHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER+D I+V++VS IYGIG Y M++ +++ + + Q+ ++ LV QY R Sbjct: 130 SATKSLLERDDSIIVATVSAIYGIGDPVDYHGMVLHIQVDEKILQRNIILRLVSMQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD I+IFP+ + A R+++F + IE I+ F PLTGQ ++ IY Sbjct: 190 DFDFSRGCFRVRGDVIDIFPAENSETAIRITLFDDVIESITAFDPLTGQLFDKLKRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T A++ IK+EL R+ + EG+LLEAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTPRETTLKAIERIKKELVERVKQYTTEGKLLEAQRIEQRTKFDLEMLNEIGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR G+P PTL Y+P ++L+ +DESHVT+PQI GM +GD RK L +Y Sbjct: 310 GIENYSRHLSGRKAGDPAPTLLNYLPNNALMIIDESHVTVPQIGGMSKGDRARKNNLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P I VSATP +E E+ IIVEQ++RPTGL+DP +E Sbjct: 370 GFRLPSAHDNRPLKFNEFESIMPQCIFVSATPADYE-EKHSPIIVEQVVRPTGLIDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ A +QV+DV EI + + R+L+T LTKRMAEDLT+YL E +I+VRY+HSE+ T+E Sbjct: 429 IKPADSQVDDVLSEIKIRVEANERVLITTLTKRMAEDLTDYLTEHSIKVRYLHSEIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDV+VGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 489 RVEIIRDLRLGKFDVVVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVI YA++IT+S+Q AIDET RRR+KQL+ NK +NI P + +K+ ++I+ I E+ Sbjct: 549 NLNGKVIFYANSITRSMQAAIDETGRRRKKQLKFNKDNNITPVGILKKVKDIIESIQDEE 608 Query: 741 AATTNISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 AQ S L++ + + L K M AA NL FE+AA RD+IK LK Sbjct: 609 EFKKQ---KAQSKSNRKYEDLTEPQIIKEIGKLEKVMQSAARNLEFEKAANARDQIKFLK 665 Query: 795 SSPYFQGLDD 804 Y + D Sbjct: 666 EKIYGANIQD 675 >gi|83717423|ref|YP_440229.1| excinuclease ABC subunit B [Burkholderia thailandensis E264] gi|167616925|ref|ZP_02385556.1| excinuclease ABC subunit B [Burkholderia thailandensis Bt4] gi|257140855|ref|ZP_05589117.1| excinuclease ABC subunit B [Burkholderia thailandensis E264] gi|83651248|gb|ABC35312.1| excinuclease ABC, B subunit [Burkholderia thailandensis E264] Length = 696 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N++ I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNQERGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|323942652|gb|EGB38817.1| excinuclease ABC [Escherichia coli E482] Length = 673 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEICQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|26246750|ref|NP_752790.1| excinuclease ABC subunit B [Escherichia coli CFT073] gi|31563263|sp|Q8FJP8|UVRB_ECOL6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|26107149|gb|AAN79333.1|AE016757_237 Excinuclease ABC subunit B [Escherichia coli CFT073] Length = 673 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVXLFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLMEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|188586647|ref|YP_001918192.1| Excinuclease ABC subunit B [Natranaerobius thermophilus JW/NM-WN-LF] gi|229557963|sp|B2A713|UVRB_NATTJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|179351334|gb|ACB85604.1| Excinuclease ABC subunit B [Natranaerobius thermophilus JW/NM-WN-LF] Length = 658 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/656 (56%), Positives = 480/656 (73%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+D+ GDQP A+ +L + ++ Q LLGVTGSGKTFTMA VI+ +QRP +V+A Sbjct: 4 FKLQSDFSLEGDQPKAVDELCESLNGGNSHQTLLGVTGSGKTFTMANVIQRLQRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL EFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCGEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y + ++ L+ G ++ E+L LV QY R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGSPEEYREQVLSLRCGMEKDRDEILKGLVDIQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD IE+FP+ + A R+ +FG++IE I+E LTG+ + + I+ Sbjct: 184 DVNFTRGTFRVRGDVIEVFPASYTETAVRIELFGDEIERITEIDTLTGEILGERNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT R L A++ I+EEL +L L+++G+ +EA+RLEQR YDLEML+ G CQ Sbjct: 244 PASHFVTRRSKLEKAIESIQEELHEQLEYLKRQGKAVEAKRLEQRTNYDLEMLQEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G P L +Y P+D L+ VDESH+TIPQI GMY GD RK L ++ Sbjct: 304 GIENYSRHLIGRPAGSRPYCLIDYFPDDYLMVVDESHMTIPQIRGMYAGDMSRKQNLVDH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + I VSATPG +E E + IVEQIIRPTGLVDP E Sbjct: 364 GFRLPSALDNRPLKFQEFEKMINQNIYVSATPGPYEKEHSER-IVEQIIRPTGLVDPETE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+Y EIN + R+L+T LTK+MAEDLT+YL E IRVRYMHSE+ TLE Sbjct: 423 VRPVKGQIDDLYSEINKRTDRNERVLVTTLTKKMAEDLTDYLREMGIRVRYMHSEIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEG+LR + SLIQT+GRAAR Sbjct: 483 RMEIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRDERSLIQTMGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VI+Y D IT S++ AIDET RRREKQ+E N +HNI PQ+V++K+ +VI+ + Sbjct: 543 NVNGRVIMYGDAITDSMRRAIDETNRRREKQIEFNARHNITPQTVQKKVHDVIEATRSAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + + Q +S K+ K + L+++M AA L FE+AA +RD I LK++ Sbjct: 603 DETEAATPENIQ-EMSAKERKELIAKLQEEMKQAAKELEFEKAAELRDLIMELKTA 657 >gi|297545162|ref|YP_003677464.1| excinuclease ABC subunit B [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842937|gb|ADH61453.1| excinuclease ABC, B subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 661 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/660 (55%), Positives = 486/660 (73%), Gaps = 15/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA +I+ + RP +V+A Sbjct: 4 FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++ L+ G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ + A RV +FG++I+ I+E LTG+ + + + I+ Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEILGFRKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A+K I+EEL+ R EL+ G+++EA+RL+QR YDLEML+ G CQ Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK L EY Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +E+E + +VEQ+IRPTGLVDP V Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + QV+D+ EI +G R+L+T LTK+MAEDLT+YL + I+V+Y+HS+++T+E Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+ Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T+++ + Q+ + K K K+ ++ L K+M AA L FE+AA++RD I LK Sbjct: 597 --ATHVAEEEQKYTRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654 >gi|326389761|ref|ZP_08211326.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994243|gb|EGD52670.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus JW 200] Length = 661 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/660 (55%), Positives = 486/660 (73%), Gaps = 15/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA +I+ + RP +V+A Sbjct: 4 FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++ L+ G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ + A RV +FG++I+ I+E LTG+ + + + I+ Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A+K I+EEL+ R EL+ G+++EA+RL+QR YDLEML+ G CQ Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK L EY Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +E+E + +VEQ+IRPTGLVDP V Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + QV+D+ EI +G R+L+T LTK+MAEDLT+YL + I+V+Y+HS+++T+E Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+ Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T+++ + Q+ + K K K+ ++ L K+M AA L FE+AA++RD I LK Sbjct: 597 --ATHVAEEEQKYTRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654 >gi|167036991|ref|YP_001664569.1| excinuclease ABC subunit B [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039702|ref|YP_001662687.1| excinuclease ABC subunit B [Thermoanaerobacter sp. X514] gi|300915049|ref|ZP_07132364.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X561] gi|307724972|ref|YP_003904723.1| excinuclease ABC subunit B [Thermoanaerobacter sp. X513] gi|320115409|ref|YP_004185568.1| excinuclease ABC subunit B [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853942|gb|ABY92351.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X514] gi|166855825|gb|ABY94233.1| excinuclease ABC, B subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888773|gb|EFK83920.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X561] gi|307582033|gb|ADN55432.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X513] gi|319928500|gb|ADV79185.1| excinuclease ABC, B subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 661 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/660 (55%), Positives = 484/660 (73%), Gaps = 15/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA +I+ + RP +V+A Sbjct: 4 FKLVSNFKPTGDQPQAIDKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++ L+ G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ + A RV +FG++I+ I+E LTG+ + + + I+ Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A+K I+EEL+ R EL+ G+++EA+RL QR YDLEML+ G CQ Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK L EY Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +ELE + +VEQ+IRPTGL+DP V Sbjct: 364 GFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPYELEHSEQ-VVEQLIRPTGLIDPEVI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + QV+D+ EI +G R+L+T LTK+MAEDLT+YL + I+V+Y+HS+++T+E Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+ Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T+++ + Q+ K K K+ ++ L K+M AA L FE+AA++RD I LK Sbjct: 597 --ATHVAEEEQKYRRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654 >gi|301059008|ref|ZP_07199974.1| excinuclease ABC, B subunit [delta proteobacterium NaphS2] gi|300446889|gb|EFK10688.1| excinuclease ABC, B subunit [delta proteobacterium NaphS2] Length = 663 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/655 (56%), Positives = 478/655 (72%), Gaps = 1/655 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++Q+++ P GDQP AI L +GI + Q+LLGVTGSGKTFTMA I R +V+ Sbjct: 1 MFKLQSEFSPRGDQPQAIDALAEGITKGMRHQVLLGVTGSGKTFTMAHTIARTGRTTLVI 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E FP NAV YFVSYYDYYQPEAY+P++DTYI+K+S IN+QID+MR Sbjct: 61 APNKTLAAQLYGELHGLFPENAVHYFVSYYDYYQPEAYIPQSDTYIQKDSHINDQIDKMR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+ATR+LL+R+D I+V+SVSCIYG+GS E+Y M++ L+ G ++ +++ + LV+ QY+R Sbjct: 121 HAATRALLDRDDVIIVASVSCIYGLGSPETYYDMLLYLETGSTLPREDAVKKLVEIQYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ RG FRV GD ++I+P H ED A RV FG+++E I E PLTG+ + + I + Sbjct: 181 GDMDFYRGRFRVRGDVLDIYPVHEEDRAVRVHFFGDEVEAIQEIDPLTGKTVAALSRIAV 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVT + A++ IK EL RL L +E +LLEAQRLE+R +DLEM+ G C Sbjct: 241 YPATHYVTTTDIRDRAVEQIKSELTDRLAHLHEENKLLEAQRLEERTRFDLEMMSELGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS +LTGR GEPPPTL +Y PED LL +DESH+TIPQ++GMYRGD RK TL + Sbjct: 301 HGIENYSLHLTGRQAGEPPPTLLDYFPEDYLLIIDESHITIPQLNGMYRGDRSRKETLVQ 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ + VSATPG WEL++ + IVEQIIRPTGLVDP + Sbjct: 361 YGFRLPSALDNRPLRFEEFESRVNQAVYVSATPGPWELDRTES-IVEQIIRPTGLVDPEI 419 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A QV+D+ I + R+L+T LTKRMAEDLTEY E +IRVRYMHS++KTL Sbjct: 420 EVRPAGNQVDDLLARIRDRVARNERVLVTTLTKRMAEDLTEYYAELDIRVRYMHSDIKTL 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT GRA+ Sbjct: 480 ERMEIIRDLRMGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAS 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN +VILY D +T S++ A+DE+ RRR QL +N++H++ P++VK+ I ++ Sbjct: 540 RNVNGRVILYGDHVTGSMRRAMDESNRRRLLQLAYNREHDLTPETVKKNIDVILGSPYEA 599 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D T ++ +A+ +S + + ++ L+ +MH AA L FEEAA RD IK L+ Sbjct: 600 DYVTVPMAAEAEAPWVSPDQLEEIVEELKGKMHDAAKKLAFEEAAVYRDRIKELE 654 >gi|324116202|gb|EGC10124.1| excinuclease ABC [Escherichia coli E1167] Length = 673 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSCGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|89073356|ref|ZP_01159880.1| excinuclease ABC subunit B [Photobacterium sp. SKA34] gi|89050843|gb|EAR56317.1| excinuclease ABC subunit B [Photobacterium sp. SKA34] Length = 675 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/670 (54%), Positives = 489/670 (72%), Gaps = 20/670 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y PSGDQP AIAQL+ G+ S Q LLGVTGSGKTFT+A VI RP +++ Sbjct: 4 LFSLASEYSPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIGQANRPTLIL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP++AVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPNSAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+++SVS IYG+G +SY +M++ ++ GD ++Q+++L L + QY R Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378 D+ RGTFRV G+ I+IFP+ E A R+ +F +++E IS F PLTG R++ Sbjct: 184 NDMAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSITHRDMPRAT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK+EL +R + +LLE QR+ QR +D+EM+ G Sbjct: 244 IYPKTHYVTPREKILDAIEGIKKELVLRKEQFLSNNKLLEEQRISQRTQFDIEMMNELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+ QI MYRGD RK L Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRP++FEE+ L P TI VSATPG++E+E+ I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGNDIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI++ ++G R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVGTQVDDLLSEIHIREKKGERVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ + ILY D IT S++ AI+ET RRREKQ+E+N +H I PQ + +KI ++ L Sbjct: 544 ARNIEGRAILYGDRITGSMERAINETQRRREKQIEYNLEHGITPQKLNKKIGDI-----L 598 Query: 739 EDAATT------NISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 E A++ N + D ++ +LS ++ ++ ++ L KQM+ A NL FE+AA Sbjct: 599 ELGASSSRGKSRNKAADLHKVAESKGTYSALSPQELESQIQVLEKQMYDFAQNLEFEQAA 658 Query: 785 RIRDEIKRLK 794 RD+I +L+ Sbjct: 659 ETRDKIHKLR 668 >gi|78067007|ref|YP_369776.1| excinuclease ABC subunit B [Burkholderia sp. 383] gi|77967752|gb|ABB09132.1| Excinuclease ABC subunit B [Burkholderia sp. 383] Length = 707 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 24 DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANT 83 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 84 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 203 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAELAVRVELFDDEVETLQLFDPLTG 263 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL +G+L+EAQRLEQR + Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHSDGKLVEAQRLEQRTRF 323 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G +PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGASPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 442 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 443 VRPTGLVDPEIEVRPASSQVDDVLAEINARVKAEERVLITVLTKRMAEQLTEFLADHGVK 502 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ HN+K I P+ V ++ Sbjct: 563 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 622 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 623 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 681 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 682 STRDQLALLRERVFGANVGD 701 >gi|186476713|ref|YP_001858183.1| excinuclease ABC subunit B [Burkholderia phymatum STM815] gi|184193172|gb|ACC71137.1| excinuclease ABC, B subunit [Burkholderia phymatum STM815] Length = 697 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/679 (54%), Positives = 491/679 (72%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF F++ Y P+GDQPAAI L++G+ Q LLGVTGSGKT+TMA Sbjct: 14 DESKFVTFDGSPFRLYQPYPPAGDQPAAIQTLVEGVEDGLSFQTLLGVTGSGKTYTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKMGQRDI 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F ++I+ + F PLTG Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIDTLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL +G+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKSELRDRLEFFYNDGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++F+DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPTDAIMFLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQV 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +++R ARTQV+DV EIN G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 433 VRPTGLVDPEIDVRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGVK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+ N++ I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKITDSMKRAIDETERRRAKQIAFNEQMGIVPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + + A+ +S+K+ +K L KQM A NL FE+AA+ Sbjct: 613 IKDIIDGVYNVDEARAELKEQQVRAKFEDMSEKQIAKEIKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 +RD++ L+ + + D Sbjct: 673 MRDQLALLRERVFGANVGD 691 >gi|197116550|ref|YP_002136977.1| excinuclease ABC subunit B [Geobacter bemidjiensis Bem] gi|197085910|gb|ACH37181.1| excinuclease ABC, B subunit [Geobacter bemidjiensis Bem] Length = 662 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/661 (55%), Positives = 479/661 (72%), Gaps = 3/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T + P GDQP AIA+L G+ + Q+LLGVTGSGKTFTMA+VI P +V+A Sbjct: 4 FELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+ RH Sbjct: 64 PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDKFRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D I+V+SVSCIYGIGS ESY +M ++ + GD V + E+L LV QY+R Sbjct: 124 SATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++E+FP+H ++ A R+ FG+ ++ ISE PL G +++ + IY Sbjct: 184 DVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRCAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R TL A++ I+ EL+ RL + LLEAQR+EQR +D+EM+E G CQ Sbjct: 244 PASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR GEPP TL +Y P+D LL +DESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ TI VSATP +EL+ +G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKLAEGVVVEQLIRPTGLIDPAIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E A +G R+L+T LTKRMAE+LT+Y E IRVRY+HS++ T + Sbjct: 424 VRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDIDTFQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG+FD+LVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V++YAD +T S+Q AIDET RRR Q +N++H I P+SV+ I V+ +D Sbjct: 544 NVSGRVLMYADKVTGSMQAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPEEKD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T S A++ LS K+ + LK LRK+M AA FE AA +RD+IKRL+ + + Sbjct: 604 WVTVPAS--AEEF-LSVKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLEVAEITR 660 Query: 801 G 801 G Sbjct: 661 G 661 >gi|110640983|ref|YP_668711.1| excinuclease ABC subunit B [Escherichia coli 536] gi|218688564|ref|YP_002396776.1| excinuclease ABC subunit B [Escherichia coli ED1a] gi|300992210|ref|ZP_07179819.1| excinuclease ABC subunit B [Escherichia coli MS 200-1] gi|122958476|sp|Q0TJR9|UVRB_ECOL5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764907|sp|B7MQN2|UVRB_ECO81 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|110342575|gb|ABG68812.1| excinuclease ABC subunit B [Escherichia coli 536] gi|218426128|emb|CAR06948.1| excinulease of nucleotide excision repair, DNA damage recognition component [Escherichia coli ED1a] gi|300305373|gb|EFJ59893.1| excinuclease ABC subunit B [Escherichia coli MS 200-1] gi|324011075|gb|EGB80294.1| excinuclease ABC subunit B [Escherichia coli MS 60-1] Length = 673 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 L+ Sbjct: 663 HLLR 666 >gi|229591636|ref|YP_002873755.1| excinuclease ABC subunit B [Pseudomonas fluorescens SBW25] gi|229363502|emb|CAY50736.1| excinuclease ABC subunit B [Pseudomonas fluorescens SBW25] Length = 671 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/669 (54%), Positives = 483/669 (72%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI Q+++GI + Q LLGVTGSGKTF++A VI + RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ELL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK EL RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G ++EQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AI ET RRR+KQ+ N ++ I P+ V + + +++ + Sbjct: 543 NLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIM------E 596 Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785 AT S ++ ++K ++ ++ L ++M+ A +L FE AA+ Sbjct: 597 GATVPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656 Query: 786 IRDEIKRLK 794 RDEI +L+ Sbjct: 657 TRDEIGKLR 665 >gi|127512992|ref|YP_001094189.1| excinuclease ABC subunit B [Shewanella loihica PV-4] gi|126638287|gb|ABO23930.1| Excinuclease ABC subunit B [Shewanella loihica PV-4] Length = 672 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/670 (55%), Positives = 477/670 (71%), Gaps = 21/670 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL+ G+ + Q LLGVTGSGKTFT+A VI+ MQRP I+MA Sbjct: 6 FDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTIIMA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N I++MR Sbjct: 66 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++++SVS IYG+G ESY +M++ L+ GD + Q+E+L L + QY R Sbjct: 126 SATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGTFRV G+ I+IFP+ + A RV +F ++I+ +S F PLTG ++ + +Y Sbjct: 186 DIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIARTTVY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A + IK+EL+ R L +L+EAQR+ +R+ YD+EM+ G C Sbjct: 246 PKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI MY+GD RK L EY Sbjct: 306 GIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATP +EL++ G I EQ++RPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E N R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T+E Sbjct: 426 VRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 NVN KVILYAD +TKS+ AI ET RRREKQ E N + I P+ V +KI +V+D Sbjct: 546 NVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLGDYNE 605 Query: 735 ---PIL-----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 +L + ++ TT DA LS + L K+MH A +L FE+AA + Sbjct: 606 HTAKVLPKYQKVAESRTTYAKQDASSLS-------HQIDELEKRMHQHARDLEFEQAAAL 658 Query: 787 RDEIKRLKSS 796 RDE+ L+ + Sbjct: 659 RDEVLALREA 668 >gi|227356683|ref|ZP_03841069.1| excinuclease ABC subunit B [Proteus mirabilis ATCC 29906] gi|227163191|gb|EEI48122.1| excinuclease ABC subunit B [Proteus mirabilis ATCC 29906] Length = 669 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/660 (56%), Positives = 475/660 (71%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AIA L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPGGDQPTAIASLCEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVVSSVS IYG+G +SY +M++ L G ++Q+ +L L QY R Sbjct: 125 SATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLSNGMIIDQRAILRRLADLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ NV IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +L+E QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILDAMEKIKQELAERRKVLLANDKLVEEQRVTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ IVEQ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+ K ILY D IT S+ AI ET RRREKQ + N +H I P+ + +KI +++ P Sbjct: 545 NLEGKAILYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQPTQ 604 Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++D + LS + + ++ L +M+ A +L FE+AA+ RD+++ L++ Sbjct: 605 GRNKKGHK-AVDTHEDYPLLSTAELEKEIQRLETEMYQHAKDLEFEKAAQTRDKLQTLRA 663 >gi|307730290|ref|YP_003907514.1| excinuclease ABC subunit B [Burkholderia sp. CCGE1003] gi|307584825|gb|ADN58223.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1003] Length = 697 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI L++GI Q LLGVTGSGKTFTMA Sbjct: 14 DESKFVRFEGSPFQLYQPYPPAGDQPTAIDTLVEGIEDGLSFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDI 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL EG+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSEGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDAIMLLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + V+ATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVTATPAEYE-KKTSGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN G R+L+TVLTKRMAE LTE+L + I+ Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGIK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ N +H I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLEHGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ LK L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|254185290|ref|ZP_04891878.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1655] gi|184209525|gb|EDU06568.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1655] Length = 696 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+ +EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKFVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|119774963|ref|YP_927703.1| excinuclease ABC subunit B [Shewanella amazonensis SB2B] gi|119767463|gb|ABM00034.1| Excinuclease ABC subunit B [Shewanella amazonensis SB2B] Length = 672 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/665 (55%), Positives = 481/665 (72%), Gaps = 15/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIA+L+ G+ S Q LLGVTGSGKTFT+A VI + RP I+MA Sbjct: 6 FQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRPTIIMA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++MR Sbjct: 66 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 126 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSELQYSRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGTFRV G+ I+IFP+ E A RV +F ++IE ISEF PLTGQ + + +Y Sbjct: 186 DIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLARATVY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+ IK+EL++R + +L+EAQR+ +R+ YD+EM+ G C Sbjct: 246 PKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTELGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GE PPTL +Y+P D L+ +DESH T+PQI MY+GD RK TL EY Sbjct: 306 GIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKTTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG +ELE+ I EQ++RPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLIDPELE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E+ R+L+T LTKRMAEDLT+YL E ++VRY+HS++ T+E Sbjct: 426 VRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KVILYAD IT S+ A+ ET RRR KQ++ N++H I P+ V +KI +V+D + E Sbjct: 546 NVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMD--VGER 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLK-----------SLRKQMHLAADNLNFEEAARIRDE 789 +A + ++ A S+ GK ++ +L KQMH A +L FE+AA +RDE Sbjct: 604 SAPSRGAVKAS--GRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAAALRDE 661 Query: 790 IKRLK 794 I L+ Sbjct: 662 IHGLR 666 >gi|167584790|ref|ZP_02377178.1| excinuclease ABC, B subunit [Burkholderia ubonensis Bu] Length = 696 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AIA L++GI Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIATLVEGIEDGLSFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL + +L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHADNKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAEERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N++ I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEQMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLALLRERVFGANVGD 690 >gi|170733570|ref|YP_001765517.1| excinuclease ABC subunit B [Burkholderia cenocepacia MC0-3] gi|169816812|gb|ACA91395.1| excinuclease ABC, B subunit [Burkholderia cenocepacia MC0-3] Length = 696 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 671 ATRDQLAVLRERVFGANVGD 690 >gi|295676090|ref|YP_003604614.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1002] gi|295435933|gb|ADG15103.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1002] Length = 697 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK ITF F++ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 14 DESKFITFEGSPFKLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDV 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 194 IARLIAMQYSRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL EG+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVLRAVETIKAELRDRLEFFYSEGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN + G R+L+T LTKRMAE LTE+L + I+ Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERIKAGDRVLVTTLTKRMAEQLTEFLADHGIK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+ N H I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYADNITDSMRRAIDETERRRAKQIAFNAAHGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ +K L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDEARAELKEQQTRAKFEDMSEKQLAKEIKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|197122989|ref|YP_002134940.1| excinuclease ABC subunit B [Anaeromyxobacter sp. K] gi|196172838|gb|ACG73811.1| excinuclease ABC, B subunit [Anaeromyxobacter sp. K] Length = 699 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/662 (54%), Positives = 473/662 (71%), Gaps = 17/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ + P+GDQP AI +L G+ E+ Q+LLGVTGSGKTFT+A V+ ++RP +V+A Sbjct: 3 FDLQSAFQPTGDQPRAIGELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FP AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH Sbjct: 63 HNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL RND ++V+SVSCIYG+G+ E+Y ++ +L+ G + + SL+ QY+R Sbjct: 123 AATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+FP + ED A R+ FG+ +E I EF PL G + ++ + I+ Sbjct: 183 DLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAELDKVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV+ A+ ++EEL+ RL EL+ +L+EAQRLEQR +DLEMLE G C Sbjct: 243 PNSHYVSAPEVRARAIAGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR G+PPP L +Y P+D LL +DESH T+PQI MYRGD RK TL E+ Sbjct: 303 GIENYSRWLSGRKAGDPPPCLLDYFPKDFLLVIDESHQTVPQIGSMYRGDRSRKETLVEF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L I VSATP ++ELEQ QG++VEQ+IRPTGLVDP +E Sbjct: 363 GFRLPSALDNRPLKFEEFQALVRQAIYVSATPAAYELEQAQGVVVEQLIRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +QV+D+ E+ A+ G R+L+T LTKRMAEDLTEY + +R RY+HS++ TLE Sbjct: 423 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IRDLR G+FDVL+GINLLREGLDIPE LVA+LDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSAVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD IT S++ AIDET RRRE Q +N +H I P +VK I D Sbjct: 543 NVNGRVLLYADAITASMRQAIDETGRRREIQERYNAEHGITPTTVKRNI---------SD 593 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + D + L+ ++G + + +L ++M AA L FE+AA++RD ++ Sbjct: 594 LGMAVVEADYVTVPLAAEEGAEYRPEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQA 653 Query: 793 LK 794 LK Sbjct: 654 LK 655 >gi|82776151|ref|YP_402498.1| excinuclease ABC subunit B [Shigella dysenteriae Sd197] gi|309786573|ref|ZP_07681196.1| excinuclease ABC, B subunit [Shigella dysenteriae 1617] gi|90111051|sp|Q32I48|UVRB_SHIDS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|81240299|gb|ABB61009.1| excision nuclease subunit B [Shigella dysenteriae Sd197] gi|308925636|gb|EFP71120.1| excinuclease ABC, B subunit [Shigella dysenteriae 1617] Length = 673 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALLQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|90579146|ref|ZP_01234956.1| excinuclease ABC subunit B [Vibrio angustum S14] gi|90439979|gb|EAS65160.1| excinuclease ABC subunit B [Vibrio angustum S14] Length = 675 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/665 (54%), Positives = 487/665 (73%), Gaps = 10/665 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y PSGDQP AIAQL+ G+ S Q LLGVTGSGKTFT+A VI RP +++ Sbjct: 4 LFSLASEYSPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIAQANRPTLIL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP++AVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPNSAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++L+ER D I+++SVS IYG+G +SY +M++ ++ GD ++Q+++L L + QY R Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378 D+ RGTFRV G+ I+IFP+ E A R+ +F +++E IS F PLTG R++ Sbjct: 184 NDMAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSITHRDMPRTT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A++ IK+EL +R + +LLE QR+ QR +D+EM+ G Sbjct: 244 IYPKTHYVTPREKILDAIEGIKKELVLRKEQFLGNNKLLEEQRISQRTQFDIEMMNELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+ QI MYRGD RK L Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRP++FEE+ L P TI VSATPG++E+E+ I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGNDIAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI++ ++G R+L+T LTKRMAEDLTEYL + ++VRY+HS++ T Sbjct: 424 IEVRPVGTQVDDLLSEIHIREKKGERVLVTTLTKRMAEDLTEYLTDHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PIL 737 ARNV K ILY D IT S++ AI+ET RRREKQ+E+N +H I PQ + +KI ++++ Sbjct: 544 ARNVEGKAILYGDRITGSMERAINETQRRREKQIEYNLEHGITPQKLNKKIGDILELGAP 603 Query: 738 LEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + N + D ++ +LS ++ ++ ++ L KQM+ A NL FE+AA RD+ Sbjct: 604 SSRGKSRNKAADLHKVAESKGTYSALSPQELESQIQVLEKQMYDFAQNLEFEQAAETRDK 663 Query: 790 IKRLK 794 I +L+ Sbjct: 664 IHKLR 668 >gi|167578839|ref|ZP_02371713.1| excinuclease ABC subunit B [Burkholderia thailandensis TXDOH] Length = 696 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/680 (54%), Positives = 489/680 (71%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ+ Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N + I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNHERGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|296269463|ref|YP_003652095.1| excinuclease ABC subunit B [Thermobispora bispora DSM 43833] gi|296092250|gb|ADG88202.1| excinuclease ABC, B subunit [Thermobispora bispora DSM 43833] Length = 702 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/678 (54%), Positives = 493/678 (72%), Gaps = 25/678 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ TD PSGDQPAAIA+L + I + EK +LLG TG+GKT T+A +IE +QRP +V+ Sbjct: 14 FQVVTDMTPSGDQPAAIAELERRIKAGEKDIVLLGATGTGKTATIAWLIERVQRPTLVIE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ +E + PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH Sbjct: 74 PNKTLAAQFANELRTMLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ R D +VV+SVSCIYG+G+ E Y+ +++LK+G +++ +LL LV QY R Sbjct: 134 SATWSLISRRDVVVVASVSCIYGLGTPEEYANRMLRLKVGQEIDRDQLLRRLVDMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+ P + +++A R+ MFG++IE + +PLTG+ + + + I Sbjct: 194 DVSFTRGTFRVRGDTIEVIPVY-QELAVRIEMFGDEIERLCTLHPLTGEVLGEDDEVPIL 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL RL ELE++G+LLEAQRL R TYD+EM+ G+C Sbjct: 253 PASHYVAGPERMERAIASIEAELAERLAELERQGKLLEAQRLRMRTTYDIEMMRQIGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESH T+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRPPGSPPHTLLDYFPEDFLLVLDESHQTVPQIGAMYEGDASRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ T+ +SATPG +E+ +CQG +VE +IRPTGLVDP + Sbjct: 373 GFRLPSALDNRPLKWEEFLERIGQTVYLSATPGPYEMSRCQGDVVELVIRPTGLVDPEIV 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +EI + A++G R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 433 VKPTKGQIDDLMEEIRVRAERGERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSEVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R+LR G +DVLVGINLLREGLD+PE LV+ILDADKEGFLRS+TSLIQ IGRAAR Sbjct: 493 RIELLRELRQGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSETSLIQMIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +V +YAD IT ++Q AIDET RRR KQL +NK H I+P+ +++KI +++D ++ ED Sbjct: 553 HVSGQVHMYADKITPAMQRAIDETNRRRAKQLAYNKAHGIDPKPLRKKIADILDTLVRED 612 Query: 741 AATTNISIDAQQLS---------LSKKKGK---------------AHLKSLRKQMHLAAD 776 A T + + +Q + LS+ GK A ++SL +QM AA Sbjct: 613 ADTAQLLGNGRQQARGKAPVPGVLSQTPGKHAKEIVGEMPREQLEALIESLTEQMRAAAA 672 Query: 777 NLNFEEAARIRDEIKRLK 794 +L FE AAR+RDEIK LK Sbjct: 673 DLQFELAARLRDEIKELK 690 >gi|86147958|ref|ZP_01066262.1| excinuclease ABC subunit B [Vibrio sp. MED222] gi|85834283|gb|EAQ52437.1| excinuclease ABC subunit B [Vibrio sp. MED222] Length = 676 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/669 (54%), Positives = 487/669 (72%), Gaps = 17/669 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY PSGDQP AI +LL G+ S Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 4 LFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAILL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G +SY +M++ L G+ ++Q+++L L + QY R Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 D+ RG FRV G+ I+IFP+ + A R+ MF ++++ IS F PLTG K R++ Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A++ IK+EL+ R L+ +LLE QR+ QR +D+EM+ G Sbjct: 244 VYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GE PPTLF+Y+P+D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRP++FEE+ + P TI VSATPG++E+E+ G I +Q++RPTGL+DP Sbjct: 364 EFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ + ILY D+ITKS++ AIDET RRREKQ +N++ I PQ++K I ++++ L Sbjct: 544 ARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIME---L 600 Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785 D + ++Q+ LSK ++ + L M+ A NL FE AA+ Sbjct: 601 GDLTKSKQQRQSKQVPLSKVAEPSESYVVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ 660 Query: 786 IRDEIKRLK 794 RDEI++L+ Sbjct: 661 KRDEIEQLR 669 >gi|323498199|ref|ZP_08103201.1| excinuclease ABC subunit B [Vibrio sinaloensis DSM 21326] gi|323316627|gb|EGA69636.1| excinuclease ABC subunit B [Vibrio sinaloensis DSM 21326] Length = 661 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/657 (56%), Positives = 480/657 (73%), Gaps = 17/657 (2%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI QRPAI++APNK LAAQLY Sbjct: 1 DQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYG 60 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR SAT++LLER D Sbjct: 61 EMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKD 120 Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 I+V+SVS IYG+G ESY QM++ ++ GD ++Q+++L L + QY R D+ RG FRV Sbjct: 121 AIIVASVSAIYGLGDPESYLQMMLHIRRGDVMDQRDILRRLAELQYSRNDVAFERGQFRV 180 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKIYANSHYVTPRP 390 G+ I+IFP+ + A R+ MF ++I+ IS F PLTG K R++ IY +HYVTPR Sbjct: 181 RGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFTIYPKTHYVTPRE 240 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 + A+++IK EL+ R L +LLE QR+ QR +D+EM+ G C IENYSRYL+ Sbjct: 241 RILDAIEHIKLELESRKKHLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLS 300 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510 GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E+GFRLPS +DN Sbjct: 301 GRQEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDN 360 Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570 RP++FEE+ + P TI VSATPG++ELE+ G I +Q++RPTGL+DP +E+R TQV+D Sbjct: 361 RPMKFEEFESIAPQTIFVSATPGNYELEKSDGEIADQVVRPTGLLDPQLEVRPVATQVDD 420 Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 + EI + + Q R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+ER+EIIRDLRL Sbjct: 421 LLSEIRIRSAQDERVLVTTLTKRMAEDLTEYLTEHDVRVRYLHSDIDTVERVEIIRDLRL 480 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAARN++ K ILYA Sbjct: 481 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNISGKAILYA 540 Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750 D+ITKS++ A+DET RRREKQ E+N K I PQ++K I ++++ L D + + Sbjct: 541 DSITKSMKKAMDETNRRREKQQEYNTKMGIEPQALKRNIKDIME---LGDITKSKKQRAS 597 Query: 751 QQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + LSK ++ + L QM+ A +L FE AA RD+I +L+ Sbjct: 598 KTVPLSKVAEPSQSYDVMTPQELDKEIAKLEAQMYQHAQDLEFELAAEKRDQIDKLR 654 >gi|84393387|ref|ZP_00992146.1| excinuclease ABC subunit B [Vibrio splendidus 12B01] gi|84375996|gb|EAP92885.1| excinuclease ABC subunit B [Vibrio splendidus 12B01] Length = 676 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/669 (54%), Positives = 488/669 (72%), Gaps = 17/669 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY+PSGDQP AI +LL G+ S Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 4 LFDLVSDYNPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAILL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN I++MR Sbjct: 64 APNKTLAAQLYGEMKSFFPNNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G +SY +M++ L G+ ++Q+++L L + QY R Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 D+ RG FRV G+ I+IFP+ + A R+ MF ++++ IS F PLTG K R++ Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A++ IK+EL+ R L+ +LLE QR+ QR +D+EM+ G Sbjct: 244 VYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GE PPTLF+Y+P+D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRP++FEE+ + P TI VSATPG++E+E+ G I +Q++RPTGL+DP Sbjct: 364 EFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ + ILY D+ITKS++ AIDET RRREKQ +N++ I PQ++K I ++++ L Sbjct: 544 ARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIME---L 600 Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785 D + ++Q+ LSK ++ + L M+ A NL FE AA+ Sbjct: 601 GDLTKSKQQRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLETAMYQHAQNLEFELAAQ 660 Query: 786 IRDEIKRLK 794 RDEI++L+ Sbjct: 661 KRDEIEQLR 669 >gi|218708975|ref|YP_002416596.1| excinuclease ABC subunit B [Vibrio splendidus LGP32] gi|218321994|emb|CAV18011.1| UvrABC system protein B [Vibrio splendidus LGP32] Length = 676 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/669 (54%), Positives = 487/669 (72%), Gaps = 17/669 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY PSGDQP AI +LL G+ S Q LLGVTGSGKTFT+A VI QRPAI++ Sbjct: 4 LFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAILL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 64 APNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+V+SVS IYG+G +SY +M++ L G+ ++Q+++L L + QY R Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378 D+ RG FRV G+ I+IFP+ + A R+ MF ++++ IS F PLTG K R++ Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y +HYVTPR + A++ IK+EL+ R L+ +LLE QR+ QR +D+EM+ G Sbjct: 244 VYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR GE PPTLF+Y+P+D LL +DESHVT+PQI MY+GD RK TL Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRP++FEE+ + P TI VSATPG++E+E+ G I +Q++RPTGL+DP Sbjct: 364 EFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R TQV+D+ EI + + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T Sbjct: 424 IEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ + ILY D+ITKS++ AIDET RRREKQ +N++ I PQ++K I ++++ L Sbjct: 544 ARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIME---L 600 Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785 D + ++Q+ LSK ++ + L M+ A NL FE AA+ Sbjct: 601 GDLTKSKQQRQSKQVPLSKVAEPSENYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ 660 Query: 786 IRDEIKRLK 794 RDEI++L+ Sbjct: 661 KRDEIEQLR 669 >gi|108759548|ref|YP_630851.1| excinuclease ABC subunit B [Myxococcus xanthus DK 1622] gi|108463428|gb|ABF88613.1| excinuclease ABC, B subunit [Myxococcus xanthus DK 1622] Length = 704 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/656 (54%), Positives = 473/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P GDQP AI +L +G+ ++ Q LLGVTGSGKTFTMA +I +QRP +VMA Sbjct: 4 FQLVSEHSPGGDQPRAIGELTQGLLRGDRYQTLLGVTGSGKTFTMANIIANVQRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FPHNAVEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I+RMRH Sbjct: 64 HNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDNIERMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL R+D I+V+SVSCIYG+G+ SY ++ V+ +G+ + + + LV+ QYKR Sbjct: 124 SATHSLRTRDDVIIVASVSCIYGLGAARSYVELAVRAAVGEEMGRDTFMRKLVEAQYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR GD++E+FP++ E+ A RVS FG+++E ++EF PL G + +E I I+ Sbjct: 184 DLDFHRGTFRARGDTVEVFPAYEEERAVRVSFFGDEVERVTEFDPLRGVTLGALEKIVIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV A++ I++EL +L ++EG+LLEAQRLEQR +DLEM+E G C Sbjct: 244 PASHYVAEEDVRRRAIQTIRDELSEQLQTFKREGKLLEAQRLEQRAMFDLEMIEQVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR GEPPP L +Y P + L+ +DESH T+PQI MYRGD RK TL + Sbjct: 304 GIENYSRHFSGRAAGEPPPCLIDYFPRNLLVMLDESHQTVPQIGAMYRGDRARKETLVGF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P I VSATP +EL++ QG++VEQIIRPTGL DP VE Sbjct: 364 GFRLPSALDNRPLKFGEFEELVPQAIFVSATPAEYELQKSQGVVVEQIIRPTGLTDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ +E+ + R+L+T LTKRMAEDLTEY + +RVRY+HS++ +E Sbjct: 424 IRPVGNQVDDLLEEVRQRVSRSERVLVTTLTKRMAEDLTEYFSDVGVRVRYLHSDIDAIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ IIRDLR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RMAIIRDLRKGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +VI+YAD +T S++ A++ETTRRR+ Q +N++H I P+SVK I ++ + + Sbjct: 544 NVSGRVIMYADNVTDSMKKALEETTRRRDIQRAYNQEHGITPRSVKSNITDLSEHAAYDA 603 Query: 740 -DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D ++ + + L K+ K ++ K M AAD + FE+AA RD ++ LK Sbjct: 604 GDVGALPMAAEGEDDVLQPKEIKRLIEEFTKDMLAAADEMQFEKAAEYRDRVQLLK 659 >gi|153005353|ref|YP_001379678.1| excinuclease ABC subunit B [Anaeromyxobacter sp. Fw109-5] gi|152028926|gb|ABS26694.1| excinuclease ABC, B subunit [Anaeromyxobacter sp. Fw109-5] Length = 729 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/654 (55%), Positives = 476/654 (72%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++++ P+GDQP AI +L G+ ++ Q+LLGVTGSGKTFT+A V+ ++RP +V+A Sbjct: 33 FDLRSEFQPTGDQPRAIGELTAGLRRGDRHQVLLGVTGSGKTFTVANVVAELRRPTLVIA 92 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH Sbjct: 93 HNKTLAAQLYGEFKELFPSAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 152 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL RND ++V+SVSCIYG+G+ E+Y ++ Q++ G + + SL+ QY+R Sbjct: 153 AATHALLTRNDVLIVASVSCIYGLGTAEAYFGLLQQIERGQEFVRDRFIRSLIDIQYERN 212 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+FP + ED A R+ FG+ +E I EF PL G + V+ + I+ Sbjct: 213 DVDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAEVDKVAIF 272 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV+ T A+ ++EEL+ RL EL+ +L+EAQRLEQR +DLEMLE G C Sbjct: 273 PNSHYVSAPETRKRAVDGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 332 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR G+PPP L +Y P+D L+ VDESH TIPQI MYRGD RK TL E+ Sbjct: 333 GIENYSRWLSGRKAGDPPPCLLDYFPKDFLVVVDESHQTIPQIGAMYRGDRSRKETLVEF 392 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L I VSATP +EL++ QG++VEQIIRPTGL DP VE Sbjct: 393 GFRLPSALDNRPLRFEEFERLVHQGIYVSATPAEYELQKAQGVVVEQIIRPTGLTDPEVE 452 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +QV+D+ E+ A+ G R+L+T LTKRMAEDLTEY + +R RY+HS+++TLE Sbjct: 453 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIETLE 512 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IRDLR G+FDVL+GINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQTIGRAAR Sbjct: 513 RSALIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSEVSLIQTIGRAAR 572 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VILYAD +T S++ A+DET RRRE Q +N +H I PQ+VK I ++ ++ D Sbjct: 573 NVNGRVILYADAVTASMRRALDETDRRREIQRAYNLEHGITPQTVKRNITDLHMAVVEAD 632 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ + ++ A + +L ++M AA L FE+AA++RD I LK Sbjct: 633 YVTVPMAAE-DGAEYKPEQLPAIVAALEQEMKEAARALEFEKAAQLRDRILALK 685 >gi|197284504|ref|YP_002150376.1| excinuclease ABC subunit B [Proteus mirabilis HI4320] gi|238693135|sp|B4ESU7|UVRB_PROMH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|194681991|emb|CAR41446.1| excinuclease ABC subunit B [Proteus mirabilis HI4320] Length = 669 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/660 (56%), Positives = 475/660 (71%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AIA L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPGGDQPTAIASLCEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVVSSVS IYG+G +SY +M++ L G ++Q+ +L L QY R Sbjct: 125 SATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLSNGMIIDQRAILRRLADLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ NV +Y Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +L+E QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILDAMEKIKQELAERRKVLLANDKLVEEQRVTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ IVEQ++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPVVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+ K ILY D IT S+ AI ET RRREKQ + N +H I P+ + +KI +++ P Sbjct: 545 NLEGKAILYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQPTQ 604 Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++D + LS + + ++ L +M+ A +L FE+AA+ RD+++ L++ Sbjct: 605 GRNKKGHK-AVDTHEDYPLLSTAELEKEIQRLETEMYQHAKDLEFEKAAQTRDKLQTLRA 663 >gi|167838882|ref|ZP_02465659.1| excinuclease ABC subunit B [Burkholderia thailandensis MSMB43] Length = 696 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA Sbjct: 13 DESKFVTFDGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 73 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+ Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRIGQREV 192 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDSLHLFDPLTG 252 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRDRLEFFHRDGKLVEAQRLEQRTRF 312 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E + G EQ+ Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-RRVSGQTAEQV 431 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++ Sbjct: 432 VRPTGLVDPEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N++ I P+ V ++ Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEEMGITPRGVVKR 611 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 + RD++ L+ + + D Sbjct: 671 QTRDQLALLRERVFGANVGD 690 >gi|226330883|ref|ZP_03806401.1| hypothetical protein PROPEN_04804 [Proteus penneri ATCC 35198] gi|225201678|gb|EEG84032.1| hypothetical protein PROPEN_04804 [Proteus penneri ATCC 35198] Length = 669 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/665 (56%), Positives = 476/665 (71%), Gaps = 7/665 (1%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 SKD F++ +++ P GDQPAAIA L +G+ Q LLGVTGSGKTFT+A VI + R Sbjct: 2 SKD---FKLHSEFKPGGDQPAAIASLCEGLDDGLAHQTLLGVTGSGKTFTIANVIANLNR 58 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +V+APNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE Sbjct: 59 PTMVLAPNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I++MR SAT++LLER D IVVSSVS IYG+G +SY +M++ L G ++Q+ +L L Sbjct: 119 IEQMRLSATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLTNGMIIDQRAILRRLAD 178 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ NV Sbjct: 179 LQYTRNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNV 238 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 +Y +HYVTPR + AM+ IK+EL R L +L+E QR+ QR +DLEM+ Sbjct: 239 PRFTVYPKTHYVTPRERILEAMEEIKKELADRRKVLLANNKLVEEQRVTQRTQFDLEMMN 298 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD RK Sbjct: 299 ELGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRK 358 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL EYGFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I+EQ++RPTGL Sbjct: 359 ETLVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNEIIEQVVRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP VE+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E RVRY+HS Sbjct: 419 LDPIVEVRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI- 733 IGRAARN+ K ILY D IT S+ AI ET RRREKQ + N +H I P+ + +K+ +++ Sbjct: 539 IGRAARNLEGKAILYGDKITDSMAKAISETERRREKQQQFNLEHGIVPKGLNKKVGDILK 598 Query: 734 --DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 P + + I LS + + ++ L +M+ A +L FE+AA RD++ Sbjct: 599 IGQPTQGRNKKGHKATDIHENYPLLSTAELEKEIQRLEAEMYQYAKDLEFEKAASTRDKL 658 Query: 791 KRLKS 795 + L++ Sbjct: 659 QALRA 663 >gi|319786463|ref|YP_004145938.1| excinuclease ABC subunit B [Pseudoxanthomonas suwonensis 11-1] gi|317464975|gb|ADV26707.1| excinuclease ABC, B subunit [Pseudoxanthomonas suwonensis 11-1] Length = 675 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/667 (55%), Positives = 486/667 (72%), Gaps = 11/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L++G + Q+LLGVTGSGKT+T+A V++ +Q+P +VMA Sbjct: 5 FELVSPYAPAGDQPYAIEKLVEGFDAGLAKQVLLGVTGSGKTYTIANVVQQVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I++MR Sbjct: 65 HNKTLAAQLYGEFKAFFPNNSVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D +VV++VS IYG+G+ E Y + + L G+ ++Q+ELL L + QY R Sbjct: 125 AATKALLSRRDVLVVATVSAIYGLGAPEDYLSLRLILSRGERIDQRELLRHLTQLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV G+ +++ P+ + A R+ +F ++E IS F PLTG+ +R V IY Sbjct: 185 EYELQRGTFRVRGEVVDVHPAESDAEAVRIELFDGEVENISLFDPLTGEVLRRVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R + +A++ IK ELK RL +L + +L+EAQRL QR +DLEM+ G C Sbjct: 245 PKTHYATTRDRVLSAIETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PG+PPPTLF+Y+P D+LL VDESHVTIPQI MY+GD RK TL E+ Sbjct: 305 GIENYSRHLTGKAPGQPPPTLFDYLPADALLVVDESHVTIPQIGAMYKGDRSRKETLVEF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEEW P +I VSATPG +E + +VE ++RPTGLVDP VE Sbjct: 365 GFRLPSALDNRPLKFEEWEERAPRSIYVSATPGPYEQREAGDQVVELVVRPTGLVDPQVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN QG R+L+T LTKRMAE+LT+YL E +I+VRY+HS+V T+E Sbjct: 425 IRPVGTQVDDLMGEINKCVAQGDRVLVTTLTKRMAENLTDYLAEHDIKVRYLHSDVDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSSGSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ + ILYAD+IT+S+Q AI+ET RRREKQ ++N +H I P+ V +IM+V++ E Sbjct: 545 NLRGRAILYADSITRSMQAAIEETNRRREKQEQYNAEHGIVPRQVVRQIMDVMEGARAEP 604 Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 T A +L K A ++ L ++M+ A +L FE+AAR+RDE Sbjct: 605 GETKGKGKGRGKTRQVAEPAADYSTLDPAKAVAKIQELEQRMYQHARDLEFEDAARLRDE 664 Query: 790 IKRLKSS 796 I++LK + Sbjct: 665 IRKLKEA 671 >gi|254296830|ref|ZP_04964284.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 406e] gi|157806679|gb|EDO83849.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 406e] Length = 679 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/668 (54%), Positives = 485/668 (72%), Gaps = 6/668 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA I + RPAIV A Sbjct: 8 FQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPAIVFA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR Sbjct: 68 PNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+++ L+ QY R Sbjct: 128 SATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG+ + + +Y Sbjct: 188 EQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPRFTVY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR +DLEML+ G C+ Sbjct: 248 PSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQELGFCK 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD RK L +Y Sbjct: 308 GIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKENLVDY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ++RPTGLVDP +E Sbjct: 368 GFRLPSALDNRPLKFPEFERKMRQMVFVSATPADYE-QRVSGQTAEQVVRPTGLVDPQIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++VRY+HS++ T+E Sbjct: 427 VRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 487 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K +LYAD IT S++ AIDET RRR KQ+ +N+K I P+ V ++I ++ID + D Sbjct: 547 NVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNAD 606 Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + +AQQ + +S+K+ +K L KQM A NL FE+AA+ RD++ L+ Sbjct: 607 EARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALLRER 665 Query: 797 PYFQGLDD 804 + + D Sbjct: 666 VFGANVGD 673 >gi|253990411|ref|YP_003041767.1| excinuclease ABC subunit B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781861|emb|CAQ85024.1| uvrabc system protein b (protein uvrb) (excinuclease abc subunit b) [Photorhabdus asymbiotica] Length = 673 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/658 (56%), Positives = 474/658 (72%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI QL +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 9 FKLHSDFEPGGDQPEAICQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 69 PNKTLAAQLYSEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G +SY +M++ L G ++Q+ +L L + QY R Sbjct: 129 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMIIDQRSILRRLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F +++E +S F PLTGQ NV +Y Sbjct: 189 DQVFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVQYNVPRYTVY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL+ R L G+LLE QR+ QR +DLEM+ G C Sbjct: 249 PKTHYVTPRERIIQAMEQIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELGYCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 309 GIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPLRFEE+ L P TI VSATPG +ELE+ G +VEQ++RPTGL+DP VE Sbjct: 369 GFRMPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDVVEQVVRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 429 VRPVTTQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N++ K ILY D IT S+ AI ET RRR KQ N + I P+ + +KI +++ P Sbjct: 549 NLHGKAILYGDKITDSMAKAIGETERRRTKQQIFNAERGIVPKGLNKKIGDILQIGQPAG 608 Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + S LS K+ + ++ L +M+ A +L FE AA +RD+++ L+ Sbjct: 609 GKGKTKGKAVATTEAFSKLSAKELENKIRELEAKMYQHAQDLEFELAANVRDQVQILR 666 >gi|67640579|ref|ZP_00439380.1| excinuclease ABC, B subunit [Burkholderia mallei GB8 horse 4] gi|134283066|ref|ZP_01769768.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 305] gi|217424494|ref|ZP_03455992.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 576] gi|134245714|gb|EBA45806.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 305] gi|217392418|gb|EEC32442.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 576] gi|238521326|gb|EEP84778.1| excinuclease ABC, B subunit [Burkholderia mallei GB8 horse 4] Length = 679 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/668 (54%), Positives = 485/668 (72%), Gaps = 6/668 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y PSGDQP AIA L++G+ Q LLGVTGSGKT+TMA I + RPAIV A Sbjct: 8 FQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPAIVFA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR Sbjct: 68 PNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+E+++ L+ QY R Sbjct: 128 SATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+I+IFP+ ++A RV +F ++++ + F PLTG+ + + +Y Sbjct: 188 EQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPRFTVY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR +DLEML+ G C+ Sbjct: 248 PSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQELGFCK 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD RK L +Y Sbjct: 308 GIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKENLVDY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + VSATP +E ++ G EQ++RPTGLVDP +E Sbjct: 368 GFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQVVRPTGLVDPQIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV EI + R+L+TVLTKRMAE LTE+L + ++VRY+HS++ T+E Sbjct: 427 VRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 487 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K +LYAD IT S++ AIDET RRR KQ+ +N+K I P+ V ++I ++ID + D Sbjct: 547 NVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNAD 606 Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + +AQQ + +S+K+ +K L KQM A NL FE+AA+ RD++ L+ Sbjct: 607 EARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALLRER 665 Query: 797 PYFQGLDD 804 + + D Sbjct: 666 VFGANVGD 673 >gi|269139892|ref|YP_003296593.1| excinuclease ABC subunit B [Edwardsiella tarda EIB202] gi|267985553|gb|ACY85382.1| excinuclease ABC subunit B [Edwardsiella tarda EIB202] gi|304559728|gb|ADM42392.1| Excinuclease ABC subunit B [Edwardsiella tarda FL6-60] Length = 672 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/664 (56%), Positives = 477/664 (71%), Gaps = 13/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L G+ Q LLGVTGSGKTFT+A VI + RP +VMA Sbjct: 5 FKLHSAFQPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLSELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F +++E +S F PLTGQ +R V +Y Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEADDEALRVELFDDEVERLSLFDPLTGQLLRTVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ I EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIHAELATRRQSLLANNKLLEEQRLAQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGDEVIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EIN A G R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEINQRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FD LVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD +T S+ AI ET RRRE+Q N H I PQ++ +K+ +++ L D Sbjct: 545 NLNGKAILYADKMTPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQ---LGD 601 Query: 741 AATTNIS--IDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A + + + Q+ + LS K+ + ++ L QM+ A NL FE+AA +RDEI Sbjct: 602 APSRSRAKGTRGQRAAEPRTDYRDLSAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEI 661 Query: 791 KRLK 794 L+ Sbjct: 662 HILR 665 >gi|261343466|ref|ZP_05971111.1| excinuclease ABC subunit B [Providencia rustigianii DSM 4541] gi|282568614|gb|EFB74149.1| excinuclease ABC subunit B [Providencia rustigianii DSM 4541] Length = 672 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/670 (55%), Positives = 481/670 (71%), Gaps = 14/670 (2%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 SKD F++ +D+ P GDQP AI +L++G+ Q LLGVTGSGKTFT+A VI R Sbjct: 2 SKD---FKLYSDFQPGGDQPEAIRKLIEGLEDGLAHQTLLGVTGSGKTFTIANVIAQENR 58 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P ++MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE Sbjct: 59 PTMLMAHNKTLAAQLYSEMKGFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEH 118 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I++MR SAT++LLER D IVV+SVS IYG+G +SY +M++ L G ++Q+ +L L Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLAD 178 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D RGTFRV G+ I+IFP+ ++ A RV +F +++E +S F PLTG + Sbjct: 179 LQYTRNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDDEVERLSLFDPLTGAIQHRI 238 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 +Y +HYVTPR + AM+ IK EL R L + +L+E QR+ QR +DLEM+ Sbjct: 239 PRFTVYPKTHYVTPRERILEAMEQIKIELADRRRVLLENNKLIEEQRVAQRTQFDLEMMN 298 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI MY+GD RK Sbjct: 299 ELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRK 358 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL EYGFRLPS +DNRP+RFEE+ P TI VSATPG++ELE+ ++EQ++RPTGL Sbjct: 359 ETLVEYGFRLPSALDNRPMRFEEFEAAAPQTIYVSATPGNYELEKSGHEVIEQVVRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E+R TQV+D+ EI L ++ R+L+T LTKRMAEDLTEYL E RVRY+HS Sbjct: 419 LDPIIEVRPVTTQVDDLLSEIRLRVEKQERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN+N K ILY D IT S+ AI ET RRR KQ+E+N+ H I PQ +K+K+ +++ Sbjct: 539 IGRAARNLNGKAILYGDRITNSMAKAIAETERRRAKQIEYNEAHGITPQGLKKKVGDILQ 598 Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + + +++++ Q S+S K+ + + L QM+ A +L FE AAR Sbjct: 599 IGHKVGGKGKGRGKGSNKEDLALNIQ--SMSTKELEQRISQLEAQMYKHAQDLEFEAAAR 656 Query: 786 IRDEIKRLKS 795 +RDE++ L++ Sbjct: 657 VRDELQTLRN 666 >gi|212635179|ref|YP_002311704.1| excinuclease ABC subunit B [Shewanella piezotolerans WP3] gi|212556663|gb|ACJ29117.1| Excinuclease ABC, B subunit [Shewanella piezotolerans WP3] Length = 667 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/663 (54%), Positives = 478/663 (72%), Gaps = 12/663 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + FQ+++ Y P+GDQP AI QL+ G+ S Q LLGVTGSGKTFT+A VIE M RP I+ Sbjct: 4 SVFQLESQYKPAGDQPTAINQLVDGLESGLASQTLLGVTGSGKTFTIANVIEKMARPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ G ++Q+++L L + QY Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKSYMKMLLHLREGAIMDQRDMLKRLSELQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I++FP+ + A RV +F ++IE +S F PLTG ++ + I Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSDKHAIRVELFDDEIERLSLFDPLTGHIMKRIARIT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y SHYVTPR ++ A ++IKEEL+ R +L +L+E QR+ +R+ YD+EM+ G Sbjct: 244 VYPKSHYVTPRESILAATEHIKEELRERKKQLLDLNKLIEEQRITERVQYDVEMMTELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR G+ PPTL +Y+PED LL +DESHVT+PQI MY+GD RK L Sbjct: 304 CSGIENYSRYLSGRASGDGPPTLLDYLPEDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ L P +I VSATP +E+ + +G + EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSEYEINRSEGEVAEQVVRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ EI R+L+T LTKRM+EDL+EYL E ++VRY+HS++ T Sbjct: 424 IEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG FDVL+GINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILY D ITKS+ AI ET RRRE Q ++N + I P+ V ++I +V+D Sbjct: 544 ARNVNGKVILYGDRITKSMDKAITETNRRREMQHQYNLDNGITPKGVIKRITDVMDV--- 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKA-------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + N+S + +++ S A + L KQMH A NL FEEAA +RD + Sbjct: 601 --GDSDNVSSEFAKVAESDADYHAKPADISHEIDKLEKQMHEHAKNLEFEEAAALRDRVG 658 Query: 792 RLK 794 RL+ Sbjct: 659 RLR 661 >gi|43284|emb|CAA27314.1| uvrB [Escherichia coli] Length = 673 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+ S++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLRSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + D + +S K + + L M A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|296134221|ref|YP_003641468.1| excinuclease ABC, B subunit [Thermincola sp. JR] gi|296032799|gb|ADG83567.1| excinuclease ABC, B subunit [Thermincola potens JR] Length = 676 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/655 (55%), Positives = 478/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI ++++GI++ + Q LLGVTGSGKTFTMA VI + +P +V+A Sbjct: 3 FKLVSEYKPKGDQPKAIREIVEGINAGLRHQTLLGVTGSGKTFTMANVIAQVNKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH Sbjct: 63 HNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y ++V ++ G ++++ LL LV QY+R Sbjct: 123 SATAALFERRDVIIVASVSCIYGLGSPEDYKNLVVSIRRGSAMDRDRLLRRLVDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRG FRV GD +EIFP+ + A R+ FG++I+ I E LTG+ + I IY Sbjct: 183 DINFIRGKFRVRGDVVEIFPASYTERAVRIEFFGDEIDRIVEIDTLTGEILGERNHISIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A++ I+ EL+ RL EL +G+LLEAQRLEQR +D+EM+ G C Sbjct: 243 PASHFATSQENLERAIRDIEAELEQRLNELRSQGKLLEAQRLEQRTNFDIEMMREMGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR PGEPP TL +Y P+D L+ +DESHVT+PQI GMY GD RK+ L E+ Sbjct: 303 GIENYSRHITGRAPGEPPYTLLDYFPDDFLMIIDESHVTVPQIGGMYEGDRSRKSALIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATPG +E E +VEQIIRPTGLVDP ++ Sbjct: 363 GFRLPSAYDNRPLTFGEFEKHINQVVYVSATPGPYEQEHS-ARVVEQIIRPTGLVDPEIQ 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI+ ++ R+L+T LTK+MAEDLT+YL E I+VRY+HS++KTLE Sbjct: 422 VRPTKGQIDDLLTEIHARLEKNERVLITTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQTIGRAAR Sbjct: 482 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YADTIT+S++ AIDET RRR+ Q+++NK HNI PQ+VK+ + +VI+ + Sbjct: 542 NVEGKVIMYADTITQSMKKAIDETNRRRKIQMDYNKAHNITPQTVKKAVRDVIEATIKVA 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T +SKK + + + K+M AA L FE+AA +RD + L+ Sbjct: 602 EPTEKYVAGRNTAKMSKKDLRKLITQIEKEMQTAARRLEFEKAAELRDLLIELRG 656 >gi|257064686|ref|YP_003144358.1| Excinuclease ABC subunit B [Slackia heliotrinireducens DSM 20476] gi|256792339|gb|ACV23009.1| Excinuclease ABC subunit B [Slackia heliotrinireducens DSM 20476] Length = 698 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/657 (55%), Positives = 489/657 (74%), Gaps = 4/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y PSGDQP AI +L +GI S + Q LLGVTGSGKTFTMAK IEA+QRP +VMA Sbjct: 6 FKVVAPYEPSGDQPQAIEKLAEGIESGLRYQTLLGVTGSGKTFTMAKTIEAIQRPTLVMA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E K FFP+NAV YFVSYYDYYQPEAYVP+TDT+IEK++SINE+++++RH Sbjct: 66 PNKTLAAQLAAELKEFFPNNAVVYFVSYYDYYQPEAYVPQTDTFIEKDASINEEVEKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL R D IVV+SVSCIYGIGS Y+ M V + ++ +++ L+ QY R Sbjct: 126 AATSSLLSRRDIIVVASVSCIYGIGSPMDYAGMAVFVDKEVPQDRDDVIYKLIDIQYDRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD++++FP + D R+ +G++IE ISE +TG+ + + E + I+ Sbjct: 186 DYELKRGTFRVRGDALDVFPPYA-DNPVRIEFWGDEIERISEIDNVTGEVLGSYEALPIW 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT RP ++ A+ I++EL+ RL + + EG+LLEAQRLE R+ YDLEMLET G C Sbjct: 245 PASHYVTARPKMDKALNTIQDELRERLQQFKDEGKLLEAQRLEMRVNYDLEMLETMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D + +DESHVT+PQI GM+ GD RK TLAE+ Sbjct: 305 GIENYSRHLDGREPGEPPYTLIDYFPDDFVCIIDESHVTVPQIRGMHEGDRSRKVTLAEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF+E+ P I VSATPG +E E+ VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSCLDNRPLRFDEFEDRIPQFIYVSATPGDYE-EKVTQQQVEQIIRPTGLLDPEIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +Q++DV DE ++ R+L+T LTK+MAEDLT++L +R I+ RYMHS++ TLE Sbjct: 424 VRPIASQIDDVIDEAKERGERNERVLITTLTKKMAEDLTDHLLDRGIKARYMHSDIGTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRAAR Sbjct: 484 RVEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD +T S+ LAI ET RRR Q+++N++H I PQ++++ I +V+ I D Sbjct: 544 NVSGKVIMYADKLTDSMNLAITETRRRRAVQMQYNEEHGIEPQTIRKAINDVMGFITDAD 603 Query: 741 AATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 S++ ++ +S+ + + S+ ++M A+ N++FEEAAR+RD++ +L++ Sbjct: 604 GNEVGDSVEVNKVLAEMSRAEVMRVISSMEEEMAAASVNMDFEEAARLRDQVVKLRA 660 >gi|311280344|ref|YP_003942575.1| excinuclease ABC, B subunit [Enterobacter cloacae SCF1] gi|308749539|gb|ADO49291.1| excinuclease ABC, B subunit [Enterobacter cloacae SCF1] Length = 673 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FTLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVINNLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ + +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHMTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG ++ IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESTIQRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKEELVDRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GM+RGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVSTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L E Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQSQYNEEHGIVPQGLNKKVVDIL--ALGEG 602 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T +A + +L+ K + + L QM A NL FEEAA+IRD++ Sbjct: 603 LAKTRGKGRGKSRTAAQTEAVEKALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|254247696|ref|ZP_04941017.1| Excinuclease ABC, B subunit [Burkholderia cenocepacia PC184] gi|124872472|gb|EAY64188.1| Excinuclease ABC, B subunit [Burkholderia cenocepacia PC184] Length = 707 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 24 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 83 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 84 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 203 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 263 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 323 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 442 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 443 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 502 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRA RNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K I P+ V ++ Sbjct: 563 RSLIQTIGRAGRNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 622 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D A + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 623 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 681 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 682 ATRDQLAVLRERVFGANVGD 701 >gi|77458102|ref|YP_347607.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf0-1] gi|90111048|sp|Q3KF38|UVRB_PSEPF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|77382105|gb|ABA73618.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf0-1] Length = 671 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/665 (54%), Positives = 484/665 (72%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI +++GI + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFDPAGDQPEAIRLMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ L+ L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALVRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E IS F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK EL+ RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G ++EQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVIEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI R+L+T LTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQ+ N + I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N +A+ S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENAKYEAELRSPSEITKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 IAKLR 665 >gi|269836827|ref|YP_003319055.1| excinuclease ABC, B subunit [Sphaerobacter thermophilus DSM 20745] gi|269786090|gb|ACZ38233.1| excinuclease ABC, B subunit [Sphaerobacter thermophilus DSM 20745] Length = 664 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/657 (56%), Positives = 491/657 (74%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ TD P+GDQP AIAQL++G+ Q LLGVTGSGKTFTMA VI+A+QRP +V+A Sbjct: 4 FQLVTDLRPTGDQPKAIAQLVEGLQRGYDQQTLLGVTGSGKTFTMANVIQAVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK++ IN++ID++RH Sbjct: 64 PNKTLAAQLYSEFKEFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDADINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+LL R D I+V+SVSCIYGIGS E Y + IV L+ G +V + ++L LV+ QY+R Sbjct: 124 AATRALLTRRDVIIVASVSCIYGIGSPEEYGKTIVSLRRGATVRRDKVLRHLVELQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++RGTFRV GD+++IFP++ E++A R+ +G++IE I + PLTG+ + I IY Sbjct: 184 DLTLMRGTFRVRGDTLDIFPAY-EEIAVRIEFWGDEIERIVDIDPLTGEILAERNEIDIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + L A+K I+EEL+ L LE EG++LEA RL+QR YDLEML+ G C Sbjct: 243 PAKHFVTSQEKLQRAIKSIQEELEEWLKHLEAEGKILEAARLKQRTLYDLEMLQEAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GEPP TL +Y P+D L+F+DESH++IPQ+ GMY GD RK L E+ Sbjct: 303 GIENYSRHLSGRKEGEPPWTLLDYFPDDYLMFIDESHMSIPQVRGMYGGDRSRKDILVEF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ I VSATPG +EL+ + +VEQ+IRPTGL+DP + Sbjct: 363 GFRLPSARDNRPLTFDEFMQHINQVIYVSATPGEFELQNSKQ-VVEQVIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ DEI+ +G R L+T LTK+MAEDL +YL E IR Y+HSE+ TLE Sbjct: 422 VRPTKGQIDDLIDEIHRRVARGERALVTTLTKKMAEDLADYLKEIGIRTHYLHSEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS++SLIQTIGRAAR Sbjct: 482 RIEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSESSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 +V+ KVI+YADTIT+S++ AI+ET RRR Q+ +N++H I P+ + +++ ++ D + + Sbjct: 542 HVDGKVIMYADTITRSMEAAINETYRRRAIQIAYNEEHGIEPRGIVKEVRDLTDRVRAVA 601 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+A+ A ++ L + +K L +QM AA L FE+AA +RD+I L+ Sbjct: 602 EEASPYRAESKAGAIAELPPDELVRMIKDLERQMKEAAKMLEFEKAALLRDQIIELR 658 >gi|70729426|ref|YP_259164.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf-5] gi|90111046|sp|Q4KF19|UVRB_PSEF5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|68343725|gb|AAY91331.1| UvrABC system, B protein [Pseudomonas fluorescens Pf-5] Length = 671 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/665 (55%), Positives = 482/665 (72%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI +++GI + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 4 FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E IS F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL A++ IK EL+ RL L +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPTL++Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G +VEQ++RPTGLVDP VE Sbjct: 364 GFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI R+L+T LTKRMAEDLT+YL + +RVRY+HS++ T+E Sbjct: 423 VRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N + ILYAD IT S++ AI ET RRR+KQ+ N + I P+ V + + ++++ Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVVKDVADIMEGATVPG 602 Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 + AA N + + S S+ + ++ L ++M+ A +L FE AA++RDE Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEITKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660 Query: 790 IKRLK 794 I +L+ Sbjct: 661 ITKLR 665 >gi|258517051|ref|YP_003193273.1| excinuclease ABC subunit B [Desulfotomaculum acetoxidans DSM 771] gi|257780756|gb|ACV64650.1| excinuclease ABC, B subunit [Desulfotomaculum acetoxidans DSM 771] Length = 674 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/655 (55%), Positives = 484/655 (73%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++++++ P GDQP AIAQL+ G+ + Q+LLGVTGSGKT+TMAKVIE +QRPA+++A Sbjct: 3 LKIRSEFTPRGDQPQAIAQLVDGLGKKYDKQILLGVTGSGKTYTMAKVIEEVQRPALILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++RH Sbjct: 63 PNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIAHTDTYIEKDSSLNDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIYG+G E YS +++ L+ G ++ +L LV QY+R Sbjct: 123 SATCALFERRDVVIVASVSCIYGLGDPEEYSTLVLSLRQGVEYDRDAILRKLVDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD IEIFP + A RV MFG+++E++ +F LTG+ + I ++ Sbjct: 183 DINFTRGTFRVRGDVIEIFPVAATEQAIRVEMFGDEVEKLLQFDVLTGEITGQRQHISVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + + A+ I+ EL+ RL EL K+ +LLEAQRLEQR YD+EM+ G C Sbjct: 243 PASHYATSKEKMEEAISRIESELEQRLAELRKQDKLLEAQRLEQRTNYDIEMMREMGFCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR G+PP TL +Y P+D ++F+DESHV +PQI GMY GD RKA+L E+ Sbjct: 303 GIENYSRHLTGREAGQPPYTLLDYFPDDFIMFIDESHVAVPQIGGMYEGDRSRKASLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I VSATPG++EL+ + IVEQ+IRPTGLVDP + Sbjct: 363 GFRLPSALDNRPLQFNEFEERVKQVIYVSATPGAYELKHHRQ-IVEQVIRPTGLVDPEII 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR R Q++D+ EI L ++ R+L+T LTK+MAEDLT+Y E ++VRY+HS++ TLE Sbjct: 422 IRPTRGQIDDLLMEIRLREKRDERVLITTLTKKMAEDLTDYFKENGVKVRYLHSDINTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT GRAAR Sbjct: 482 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTTGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 NV KVI+YAD IT+S+ AI+ET RRR+KQL+ N+K+NI PQ+V++ + +V++ + E Sbjct: 542 NVEGKVIMYADRITESMSKAINETERRRKKQLDFNEKYNITPQTVRKAVRDVLEATKVAE 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +S A+ +SKK + + K+M AA L FE+AAR+RD I L+ Sbjct: 602 SKVPYAVSGKAK---MSKKDLIKMIAGMEKEMKEAARQLEFEQAARLRDTIIELR 653 >gi|107028610|ref|YP_625705.1| excinuclease ABC subunit B [Burkholderia cenocepacia AU 1054] gi|116690231|ref|YP_835854.1| excinuclease ABC subunit B [Burkholderia cenocepacia HI2424] gi|105897774|gb|ABF80732.1| Excinuclease ABC subunit B [Burkholderia cenocepacia AU 1054] gi|116648320|gb|ABK08961.1| Excinuclease ABC subunit B [Burkholderia cenocepacia HI2424] Length = 707 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 24 DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 83 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 84 IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 203 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RGTFRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 263 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK+EL+ RL ++G+L+EAQRLEQR + Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 323 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L YGFRLPS +DNRPL+F E+ + VSATP +E ++ G I EQ+ Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 442 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R A +QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 443 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 502 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K I P+ V ++ Sbjct: 563 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 622 Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 I ++ID + D + +AQQ + +S+K+ +K L KQM A NL FE+AA Sbjct: 623 IKDIIDGVYNADDVRAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 681 Query: 785 RIRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 682 ATRDQLAVLRERVFGANVGD 701 >gi|253698788|ref|YP_003019977.1| excinuclease ABC subunit B [Geobacter sp. M21] gi|251773638|gb|ACT16219.1| excinuclease ABC, B subunit [Geobacter sp. M21] Length = 662 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/654 (55%), Positives = 476/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T + P GDQP AIA+L G+ + Q+LLGVTGSGKTFTMA+VI P +V+A Sbjct: 4 FELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+ RH Sbjct: 64 PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYLPSSDTFIEKDSSINDEIDKFRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D I+V+SVSCIYGIGS ESY +M ++ + GD V + E+L LV QY+R Sbjct: 124 SATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++E+FP+H ++ A R+ FG+ ++ ISE PL G +++ + IY Sbjct: 184 DVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRCAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R TL A++ I+ EL+ R+ + LLEAQR+EQR +D+EM+E G CQ Sbjct: 244 PASHYVASRQTLERAVELIRLELEERIRYFNAQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR GEPP TL +Y P+D LL +DESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ TI VSATP +EL+Q G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKQAGGVVVEQLIRPTGLIDPAIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E A +G R+L+T LTKRMAE+LT+Y E IRVRY+HS++ T + Sbjct: 424 VRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDIDTFQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG+FD+LVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +V++YAD +T S+Q AIDET RRR Q +N++H I P+SV+ I V+ +D Sbjct: 544 NLSGRVLMYADKVTGSMQAAIDETVRRRALQTAYNEEHGITPESVRRIIGNVLQAPEEKD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T S A++ +S K+ + LK LRK+M AA FE AA +RD+IKRL+ Sbjct: 604 WVTVPAS--AEEF-VSAKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLE 654 >gi|251772139|gb|EES52709.1| excinuclease ABC, B subunit [Leptospirillum ferrodiazotrophum] Length = 698 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/663 (55%), Positives = 479/663 (72%), Gaps = 3/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQ AI +L +G+ +RE+ Q LLGVTGSGKTFT+A VI +PA+V+A Sbjct: 13 FRLVSDYAPCGDQGKAIDRLTRGVSNRERFQTLLGVTGSGKTFTVANVIANAGKPALVLA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EF+ FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S+IN+ IDRMRH Sbjct: 73 PNKTLAAQLYREFREFFPDNRVEYFVSYYDYYQPEAYLPATDTYIEKDSAINDLIDRMRH 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+GS +SY +M + L+ G + ++ LL LV+ QY+R Sbjct: 133 SATTALLERLDTIVVASVSCIYGLGSPDSYLKMHLYLEQGMEIRRQRLLERLVEIQYERN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RGTFRV GD ++IFPS E+ A RV +G+ +E I E PLTG+++ V +I IY Sbjct: 193 EIDFHRGTFRVKGDVVDIFPSSYEERALRVEFWGDTVERIREIDPLTGKELLQVPSIIIY 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV P L A+ I+EEL R+ K +L+EAQR+EQR +DLEM+ G C Sbjct: 253 PATHYVLPPDKLEGALAAIEEELAERIDYFRKNNKLVEAQRIEQRTLFDLEMIREVGFCH 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y P D LL +DESHV +PQ+ GMY+GD RK +L ++ Sbjct: 313 GIENYSRHLSGRAPGEPPPTLFDYFPPDYLLVIDESHVAVPQVGGMYQGDHSRKKSLVDF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL EE+ + I VSATPG +EL +G+ VEQ+IRPTGLVDP VE Sbjct: 373 GFRLPSAFDNRPLTAEEFEQVMKQVIFVSATPGPYELAASKGVTVEQVIRPTGLVDPEVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A QV+ + E+ QG R+L+T LTKRMAE+LTEYL ER +RVRY+HSE+ T+E Sbjct: 433 VVPAVHQVDHLLGEVRKTVAQGDRVLVTTLTKRMAENLTEYLEERGVRVRYLHSEIDTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT GRAAR Sbjct: 493 RMEIIRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRRSLIQTSGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ +VI YAD++T S++ AIDE RRR QL +NK++ I PQS+++ I E + + D Sbjct: 553 NLRGRVIFYADSVTGSMKEAIDEMNRRRSIQLAYNKENGIVPQSIRKNIPEALYHVSESD 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T ++ + ++ ++ G A +R +M AA+ L+FE+AA RD ++ P + Sbjct: 613 YVTVEMASEEREEVVAHSLGDAE---IRARMVEAAEALDFEKAAYFRDLLRARGERPSGE 669 Query: 801 GLD 803 G+D Sbjct: 670 GID 672 >gi|253996555|ref|YP_003048619.1| excinuclease ABC subunit B [Methylotenera mobilis JLW8] gi|253983234|gb|ACT48092.1| excinuclease ABC, B subunit [Methylotenera mobilis JLW8] Length = 677 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/661 (54%), Positives = 475/661 (71%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ + P+GDQP AI +L +G++ K Q LLGVTGSGKTFTMA VI +PAIVMA Sbjct: 10 YQLHQPFPPAGDQPQAIEKLTQGVNDGLKFQTLLGVTGSGKTFTMANVIARTGKPAIVMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP+N+VEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 70 PNKTLAAQLYSEFREFFPNNSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER DC+VV++VS IYGIG Y M++ + +G + Q++++ L++ QY R Sbjct: 130 SATKAMLEREDCVVVATVSAIYGIGDPSEYHGMVLHIHLGQKIGQRDIVDHLIRMQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD I++FPS + A R+S+F ++I+ I F PLTGQ + +I+ Sbjct: 190 DFDFDRGAFRVRGDVIDVFPSENSETAVRISLFDDEIDGIQLFDPLTGQIFNKIHNFRIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVT R AM+ IKEEL+ R+ KE +L+EAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTAREATIRAMETIKEELRDRVNFYIKENKLVEAQRVEQRTRFDLEMLNEIGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PPPTL +Y+P+ +LL +DESHVT+PQI MY+GD RK L +Y Sbjct: 310 GIENYSRHLTGAKPGDPPPTLMDYLPDSALLIIDESHVTVPQIGAMYKGDRARKENLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + + VSATP +E E Q +VE I RPTGL+DP + Sbjct: 370 GFRLPSAMDNRPLKFEEFERVMRQCVFVSATPADYEKEHQQQ-VVEMIARPTGLMDPEII 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A TQV+D+ EI + G R+L T LTKRM+EDLT+YL E ++ RY+HS++ T+E Sbjct: 429 VKPADTQVDDLLSEIKKRVELGERVLATTLTKRMSEDLTDYLSEHGVKTRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N +VI YA+ IT+S+QLA+DET RRR Q N+ H I P+ V ++I ++ID + +D Sbjct: 549 NLNGQVIFYANRITRSMQLAMDETERRRGVQKAFNEAHGITPRGVSKRIKDIIDGVYDKD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 A Q S LS+K+ +K L K MH AA NL FE+AA RD++K+L+ Sbjct: 609 EAVRERKAMQDQASYEALSEKQITKEMKRLEKAMHDAAKNLEFEKAADFRDQLKKLRVKF 668 Query: 798 Y 798 Y Sbjct: 669 Y 669 >gi|78043646|ref|YP_359130.1| excinuclease ABC subunit B [Carboxydothermus hydrogenoformans Z-2901] gi|90110878|sp|Q3AFF4|UVRB_CARHZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|77995761|gb|ABB14660.1| excinuclease ABC, B subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 662 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/655 (56%), Positives = 481/655 (73%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ +Y P GDQP AI +L +GI K+Q LLGVTGSGKTFTMA VI + +P +V+A Sbjct: 4 FLLKANYTPKGDQPKAIKELTEGIEKGLKMQTLLGVTGSGKTFTMANVIANVNKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID++RH Sbjct: 64 PNKTLAAQLCAEFREFFPENAVEYFVSYYDYYQPEAYLPATDTYIEKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G + Y ++++ ++ G E++ +L LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPQEYRELLLSVRKGQIYEREAILRKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RG FRV GD IE+FP+ D A R+ +FG++++ I EF LTG+ I ++ + I+ Sbjct: 184 EYDLTRGKFRVRGDVIEVFPASYTDRAVRIELFGDEVDRILEFDTLTGEIIGELKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ RL E+ G+LLEAQRL+QR YD+EML G + Sbjct: 244 PASHFATSKEKLERAIKSIEEELEERLRYFEERGKLLEAQRLKQRTLYDIEMLREVGYTK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL +Y P+D L+ +DESH+TIPQI GMY GD RK L EY Sbjct: 304 GIENYSRHLTGRKPGEPPYTLIDYFPKDFLMIIDESHITIPQIRGMYEGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + VSATPG +EL+ Q IVEQIIRPTGLVDP VE Sbjct: 364 GFRLPSAFDNRPLKFHEFEARINQVVFVSATPGPYELKHSQK-IVEQIIRPTGLVDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R QV+D+Y EI + R+L+T LTK+MAEDLTEY E ++VRY+HS++ TLE Sbjct: 423 VRPTRGQVDDLYGEIKERVARNERVLVTTLTKKMAEDLTEYFREMGVKVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQTIGRAAR Sbjct: 483 RVEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KVI+YADT+T S+Q AIDET RRR+ Q+E+N+KH I PQ+V++ + +VI+ Sbjct: 543 NVNGKVIMYADTVTASMQKAIDETNRRRKLQMEYNRKHGITPQTVQKAVRDVIEATRAVT 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + D Q +S K+ K +++ L ++M AA L FE+AA +RD I L++ Sbjct: 603 AELPEVKRDFIQ-KMSAKEFKQYVEKLTREMKEAAKALEFEKAAMLRDLIIELRA 656 >gi|261822206|ref|YP_003260312.1| excinuclease ABC subunit B [Pectobacterium wasabiae WPP163] gi|261606219|gb|ACX88705.1| excinuclease ABC, B subunit [Pectobacterium wasabiae WPP163] Length = 670 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 475/663 (71%), Gaps = 11/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FTLHSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G I++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRLRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILY D IT S+ AI ET RRREKQ +N +H I PQ + +KI +++ L Sbjct: 545 NLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQ---LGQ 601 Query: 741 AATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 +A+ ++ + ++ K + ++ L +M A NL FEEAA +RDE++ Sbjct: 602 SASKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQA 661 Query: 793 LKS 795 L++ Sbjct: 662 LRA 664 >gi|297569470|ref|YP_003690814.1| excinuclease ABC, B subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925385|gb|ADH86195.1| excinuclease ABC, B subunit [Desulfurivibrio alkaliphilus AHT2] Length = 670 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/658 (56%), Positives = 466/658 (70%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T++ P+GDQP AI L +G++ Q+LLGVTGSGKTFTMA+VI RPA+++A Sbjct: 7 FALITEFTPAGDQPRAIELLSRGVNQGATHQVLLGVTGSGKTFTMAQVIAETGRPALILA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MRH Sbjct: 67 PNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDKMRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 ATR+LL R D I+V+SVSCIYG+GS E Y M + LK+G+ E+ LV Y+R Sbjct: 127 GATRALLTRRDVIIVASVSCIYGLGSPEEYLNMHLALKVGEDYPPVEIQRRLVHMLYERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IEIFP H E+ A RV +FG+ IE I PL G + ++ Sbjct: 187 DYSFHRGTFRVRGDVIEIFPVHEEEQALRVELFGDTIEAIRVVDPLRGVVHAEQDEATVF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT R A+K IK ELK RL ELE GRLLEAQRLEQR +DLEML G C Sbjct: 247 PGSHFVTSRERQQQAVKTIKAELKERLRELESAGRLLEAQRLEQRTNFDLEMLAELGYCH 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TGR PG PPPTL +Y P+D LL VDESHV+IPQ+ GMYRGD RK TL EY Sbjct: 307 GIENYSRHFTGRPPGAPPPTLLDYFPDDYLLLVDESHVSIPQVRGMYRGDRSRKETLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELE QG +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLMFDEFAARTNQAIYVSATPGDYELEMAQGRVVEQIIRPTGLMDPAIE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ EI A++ +L+T LTKRMAEDL EY +RVRY+H+++KTLE Sbjct: 427 VRPASGQVDDLLAEIRHRAERNEAVLVTTLTKRMAEDLCEYYANLGVRVRYLHADIKTLE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++RDLR ++DVLVGINLLREGLD+PE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 487 RMELLRDLRRREYDVLVGINLLREGLDLPEVSLVAVLDADKEGFLRSERSLIQTCGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VILY D +++++ I ET RRR Q E+N++H I P +++ +I +++ I +D Sbjct: 547 NADGLVILYGDQLSEAMARTIAETNRRRAIQAEYNREHGITPATIRSRIKDIMASIYEQD 606 Query: 741 AATTNISIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 AT + A Q + S+ + + ++ L K M AA L FE+AA +RD IK LK Sbjct: 607 YATVEVPEQAVAEEQPVFRSRDELRKEIRQLEKAMQEAARELAFEDAAELRDRIKVLK 664 >gi|254447168|ref|ZP_05060635.1| excinuclease ABC, B subunit [gamma proteobacterium HTCC5015] gi|198263307|gb|EDY87585.1| excinuclease ABC, B subunit [gamma proteobacterium HTCC5015] Length = 677 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/667 (53%), Positives = 482/667 (72%), Gaps = 9/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAI L G S Q LLGVTGSGKTFTMA +++ +QRPA+++A Sbjct: 9 FNIHSQYQPAGDQPAAIQNLRAGFESGLLRQTLLGVTGSGKTFTMANLVQDLQRPALILA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR Sbjct: 69 HNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDANVNEHIEQMRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V++VS IYG+G SY M++ L +GD + Q+++L L + QY R Sbjct: 129 SATKALMERRDVVIVATVSAIYGLGDPNSYMTMMLHLVVGDMINQRDILRRLAELQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R T+RV G+ I++ P+ E A R+ +F +++E +S F PLTG+ +R ++ + +Y Sbjct: 189 DMELRRATYRVRGEVIDVHPAESEREAVRIELFDDEVENLSIFDPLTGEVLRKLQRVTVY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR TL + +K ELK RL L +L+EAQRLEQR YD+EM++ G C Sbjct: 249 PKTHYVTPRDTLVEMIDKVKAELKERLEHLRSVDKLVEAQRLEQRTMYDMEMIQELGYCN 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GRNPGEPPP L +Y+P+D+L+ +DESHVT+ Q+ MY+GD RK TL EY Sbjct: 309 GIENYSRYLSGRNPGEPPPCLLDYLPDDALMIIDESHVTVSQVGAMYKGDRSRKETLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ T+ VSATPG +E E +VEQ++RPTGLVDP +E Sbjct: 369 GFRLPSALDNRPLRFDEFENTIGQTLFVSATPGPYEEEHADA-VVEQVVRPTGLVDPELE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI+ A R+LLT LTKRMAEDLT+YL E ++VRY+HS++ T+E Sbjct: 428 VRPVATQVDDLLSEIHKRAAVDERVLLTTLTKRMAEDLTDYLMEHGVKVRYLHSDIDTVE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +VN + ILYAD IT S+Q A+DET RRR+KQ+ N++H I P++VK + +++D Sbjct: 548 HVNGRAILYADKITGSMQRAMDETERRRDKQMAFNREHGIEPKTVKRSVEDILDAGYTPG 607 Query: 741 AATTNISIDAQQ----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ A+Q LS + ++ L K+M A NL FEEAA++RD++ L+ Sbjct: 608 KPGSDRKKVAEQGEDYSGLSPAQASKEIEKLEKRMFEHARNLEFEEAAQLRDQMDTLRK- 666 Query: 797 PYFQGLD 803 Q LD Sbjct: 667 ---QALD 670 >gi|294495135|ref|YP_003541628.1| excinuclease ABC subunit B [Methanohalophilus mahii DSM 5219] gi|292666134|gb|ADE35983.1| Excinuclease ABC subunit B [Methanohalophilus mahii DSM 5219] Length = 658 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/659 (56%), Positives = 480/659 (72%), Gaps = 10/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI L GI+ + Q LLGVTGSGKTFTMA VI+ +QRP +V+A Sbjct: 4 FELVSNYSPRGDQPQAIDNLSNGINGGFRHQTLLGVTGSGKTFTMANVIQNVQRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEF++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSINE+IDR+R Sbjct: 64 HNKTLAAQLFSEFRDFFPDNAVEYFVSYYDYYQPEAYLPTTDTYIEKDSSINEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D IVVSSVSCIY +GS + + +M + LK GD V++ + LV QY+R Sbjct: 124 SATKSLMERRDVIVVSSVSCIYNLGSPKEWQEMSLFLKPGDEVDRSWIFGKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET---I 377 D+ +GTFR GD++EIFP+ ++VA RV MFG++I+ IS F PLTG+ +R VE + Sbjct: 184 DVEFTQGTFRARGDTVEIFPAQ-DNVAVRVEMFGDEIDRISYFEPLTGKVVREVEDDMQV 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+V P+ ++ A+ I+EELK + E EK+G+LLEAQR+ QR +D+EM+E G Sbjct: 243 VIYPAKHFVMPQSQIDRALVSIEEELKDTVAEFEKQGQLLEAQRIMQRTRFDIEMIEELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+ GR PGE P +L ++ P+D LL +DESHVTIPQI GM+ GD RK +L Sbjct: 303 YCSGIENYSRHFDGRKPGEAPSSLLDFFPDDYLLIIDESHVTIPQIGGMHNGDRARKKSL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS DNRPL + E+ + VSATP +EL +VEQIIRPTGLVDP Sbjct: 363 IEYGFRLPSAFDNRPLNYREFEERINQAVYVSATPADYEL-GLSDQVVEQIIRPTGLVDP 421 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 PV++R Q++D+ +E+ +++G R L+T LTK+MAEDLT+YL E IRVRYMHS++ Sbjct: 422 PVQVRPVANQIDDLMEEVRKVSERGYRTLVTTLTKKMAEDLTDYLLEMGIRVRYMHSDID 481 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER EI+R+LR G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGR Sbjct: 482 TLERAEIVRELRKGTFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGR 541 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 A+RNV++ I+YAD IT S+ A+ E RRR QLE N+KHNI P S+ ++I I + Sbjct: 542 ASRNVDAYAIMYADRITGSMSRAMSEMERRRNIQLEFNRKHNITPTSIMKEIQREI--VE 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +E+ +T +D + LSK + + L L +MH AA NL FEEAAR+RD I+ ++ + Sbjct: 600 VEEVSTPAAGVD---MGLSKMEANSMLIDLEAEMHEAARNLEFEEAARLRDAIREMRET 655 >gi|289578950|ref|YP_003477577.1| excinuclease ABC subunit B [Thermoanaerobacter italicus Ab9] gi|289528663|gb|ADD03015.1| excinuclease ABC, B subunit [Thermoanaerobacter italicus Ab9] Length = 661 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/654 (55%), Positives = 481/654 (73%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA +I+ + RP +V+A Sbjct: 4 FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++ L+ G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ + A RV +FG++I+ I+E LTG+ + + + I+ Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEILGFRKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A+K I+EEL+ R EL+ G+++EA+RL+QR YDLEML+ G CQ Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK L EY Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +E+E + +VEQ+IRPTGLVDP V Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI +G R+L+T LTK+MAEDLT+YL + I+V+Y+HS+++T+E Sbjct: 423 VRPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ AI+ET RRR+ Q+E+NKKH I P++V + + +VI+ + Sbjct: 543 NAEGRVIMYADTVTNSMKRAIEETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATHV-- 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + + K+ ++ L K+M AA L FE+AA++RD I LK Sbjct: 601 AEEEEKYKKKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654 >gi|74317586|ref|YP_315326.1| excinuclease ABC subunit B [Thiobacillus denitrificans ATCC 25259] gi|90111058|sp|Q3SIK7|UVRB_THIDA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|74057081|gb|AAZ97521.1| Excinuclease ABC, B subunit [Thiobacillus denitrificans ATCC 25259] Length = 675 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/658 (55%), Positives = 474/658 (72%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA+L++GI Q LLGVTGSGKT+TMA VI RPA++MA Sbjct: 10 FRLFQPFPPAGDQPTAIARLIEGIDDGLSYQTLLGVTGSGKTYTMANVIARAGRPALIMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 70 PNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPARDLFIEKDSSINEHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V +VS IYGIG Y MI+ L+ D + Q+E+++ L + QY R Sbjct: 130 SATKSLLERRDTVIVCTVSAIYGIGDPSDYHSMILLLRQNDKMTQREVIARLTQMQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I+IFP+ + A RV +F + +E + F PLTGQ ++ V ++ Sbjct: 190 DVDFKRGVFRVRGDVIDIFPAEHAETAIRVELFDDVVETLHLFDPLTGQILQKVSRFTVF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T A++ IK EL+ RL +L+EAQRLEQR +DLEM+ G C+ Sbjct: 250 PSSHYVTPRETTLRAIEAIKVELRERLDWYYANNKLVEAQRLEQRTRFDLEMMVELGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GEPPPTL +Y+ +D+L+F+DESHVT+ Q+ GMY+GD RK L +Y Sbjct: 310 GIENYSRHLSGRKAGEPPPTLIDYLAKDALMFIDESHVTVTQVGGMYKGDRSRKENLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P T+ VSATP +E E G +VEQ++RPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKFEEFEALMPQTVFVSATPAKYEAEHA-GQVVEQLVRPTGLIDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ E+ G R+L+T LTKRMAEDLT+YL E ++VRY+HS++ T+E Sbjct: 429 VRPVTTQVDDLMSEVKKRVAVGERVLVTTLTKRMAEDLTDYLAEHGVKVRYLHSDIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N ILYAD IT S+Q AI ET RRR KQ+ N +H I P+ V ++I ++ID + D Sbjct: 549 HLNGTAILYADRITDSMQRAIGETERRRAKQIAFNTEHGITPRGVVKRIKDIIDGVYDAD 608 Query: 741 AATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A+ + A+ + +K +K + K+M AA NL FE+AA +RD++K LK+ Sbjct: 609 ASRQELKAAQTAAEYKVMDEKSLTKRVKKIEKEMQDAAKNLEFEKAAVLRDQLKELKA 666 >gi|183598214|ref|ZP_02959707.1| hypothetical protein PROSTU_01597 [Providencia stuartii ATCC 25827] gi|188020382|gb|EDU58422.1| hypothetical protein PROSTU_01597 [Providencia stuartii ATCC 25827] Length = 672 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/661 (55%), Positives = 473/661 (71%), Gaps = 7/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI QL +G+ Q LLGVTGSGKTFT+A VI RP ++MA Sbjct: 5 FKLYSDFQPGGDQPEAIRQLSEGLEDGLAHQTLLGVTGSGKTFTIANVIAKENRPTMLMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 HNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G +SY +M++ L G ++Q+ +L L QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRAILRRLADLQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDEEVERLSLFDPLTGQIQHRVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILEAMEQIKVELADRRKVLLENNKLLEEQRITQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++E+E+ ++EQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYEIEKSGSEVIEQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + +Q+ R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRSQKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S++ AI ET RRR KQ+ N++H I PQ + +KI +++ Sbjct: 545 NLNGKAILYGDRITNSMEKAIKETERRRAKQIAFNEQHGIVPQGLNKKIGDILQIGHKVG 604 Query: 741 AATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + + ++ ++ LS K+ + + L QM+ A +L FE AA +RD+++ L Sbjct: 605 GKSKGRNKESAKIDKREDIQLLSTKELEQRISQLEAQMYKHAQDLEFEAAANVRDQLQEL 664 Query: 794 K 794 + Sbjct: 665 R 665 >gi|118602443|ref|YP_903658.1| excinuclease ABC subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567382|gb|ABL02187.1| Excinuclease ABC subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 664 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/662 (54%), Positives = 491/662 (74%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + PSGDQP AI L+ +++ K Q LLGVTGSGKTFT+A VI+ +RP+++MA Sbjct: 5 FQLISKFSPSGDQPEAIKTLIDSVNAGVKFQTLLGVTGSGKTFTLANVIQQTKRPSLIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFP+N+VEYFVSYYDYYQPEAYVP +DTYIEK+SSINEQI++MR Sbjct: 65 PNKTLAAQLYSEMKEFFPYNSVEYFVSYYDYYQPEAYVPASDTYIEKDSSINEQIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER+D I+++SVS IYG+G+ ESY M++ L +G+ Q+E+L L + QY R Sbjct: 125 SATKALLERDDVIIIASVSAIYGLGNPESYMAMLLHLSVGEVTNQREILLRLSQMQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +IRG FRV G+ I+IFP+ E+ R+ MF +IE++ F PLTG+K+++++ + IY Sbjct: 185 DVTLIRGHFRVKGEVIDIFPADSEEQTIRIEMFDEEIEQLYWFDPLTGEKLKSLQRVTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ + + IK ELK R EL +L+E QRL QR+ D+EM+ G C Sbjct: 245 PQTHYVTPKSKILNMLDDIKAELKDRRSELLSVNKLVEEQRLTQRVHMDIEMMRELGYCT 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ +NPG+PP TL +Y+P+++L+ +DESHVT+ QI GMY+GD RK TL ++ Sbjct: 305 GIENYSRYLSSQNPGDPPSTLLDYLPDNALVILDESHVTVSQIGGMYKGDRARKKTLVDF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I+VSATP +ELE +IVEQ++RPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLKFSEFEDRVHQCILVSATPAQYELE-VSSVIVEQVVRPTGLLDPEID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EI + + G R+L+T LTK+M+E L++YL + +++VRY+HS++ T+E Sbjct: 424 IRPVDTQVDDLLSEIRMRVKAGERVLVTTLTKKMSEQLSDYLNDHHVKVRYLHSDIDTIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RVEIIRDLRLGIFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N+N VILYA ITKS+Q A+DET RRR KQ +N K+NI P+ + + I+ ++D L Sbjct: 544 NINGHVILYAARITKSMQKAMDETKRRRIKQQAYNLKNNITPEGIAKPIINILDTDLTSN 603 Query: 738 -LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +E+ + I + L+KK +K L KQM+ A++L FE AA +R++IK+LK + Sbjct: 604 QIEEDNVQKVFIQLSPVQLAKK-----IKILEKQMYSFANDLAFEHAADMRNQIKQLKDT 658 Query: 797 PY 798 + Sbjct: 659 QF 660 >gi|170696608|ref|ZP_02887728.1| excinuclease ABC, B subunit [Burkholderia graminis C4D1M] gi|170138474|gb|EDT06682.1| excinuclease ABC, B subunit [Burkholderia graminis C4D1M] Length = 697 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI L++GI Q LLGVTGSGKTFTMA Sbjct: 14 DESKFVRFEGSPFQLYQPYPPAGDQPTAIETLVEGIEDGLSFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQP+AYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPKAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDI 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL +G+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSQGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMLLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLAEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ N + I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLERGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ LK L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|119469464|ref|ZP_01612368.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7] gi|119446999|gb|EAW28269.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7] Length = 664 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P+GDQP AI QL +G+ + Q LLG TG+GKTFTMA +I + RP I+MA Sbjct: 5 FQLKSQFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV +DT+IEK++SINE I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ LK+G+ V+Q+++L L + QY R Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPQSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGT+RV G+ ++IFP+ E A RV MF ++IE +S F PLTG +++ IY Sbjct: 185 DIEFSRGTYRVRGEVLDIFPAESETYAVRVEMFDDEIERLSIFDPLTGAVEKHIVRATIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A++ IK ELK R +L +L+E QR+ QR YD+EM+ G C Sbjct: 245 PKTHYVTPREKILGAIENIKIELKDRRAQLLSANKLVEEQRIAQRTQYDIEMMTELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI MY+GD RK L EY Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS MDNRPLRFEE+ + P TI VSATPG +E+E+ G + EQIIRPTGL+DP +E Sbjct: 365 GFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFEMERSGGEVAEQIIRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI ++G R+L+T LTKRM+EDLT+YL E ++VRY+HS++ T+E Sbjct: 425 VRPVGDQVDDLLSEIYHCVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSTRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +++ + ILY D +TKS+ AIDET+RRRE Q ++N + I P+++ +KI++V+D + E Sbjct: 545 HLDGRAILYGDKVTKSMAKAIDETSRRREIQHQYNIDNGIEPRALAKKILDVMD-VGEEA 603 Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 N+ + ++ LS K+ +K L +MH A NL FE+A +RDEI L+ Sbjct: 604 GPKDNLQLIRKESKKVLSAKEIATQIKQLETKMHAYASNLEFEKAGSVRDEIHELQ 659 >gi|227112999|ref|ZP_03826655.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 670 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/665 (55%), Positives = 473/665 (71%), Gaps = 15/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILY D IT S+ AI ET RRREKQ +N +H I PQ + +KI ++ L+ Sbjct: 545 NLRGKAILYGDKITASMAKAIGETERRREKQEAYNTEHGIVPQGINKKISDI-----LQL 599 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 TN A+ ++ K + ++ L +M A NL FEEAA +RDE+ Sbjct: 600 GQPTNKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEV 659 Query: 791 KRLKS 795 + L++ Sbjct: 660 QALRA 664 >gi|261854977|ref|YP_003262260.1| excinuclease ABC subunit B [Halothiobacillus neapolitanus c2] gi|261835446|gb|ACX95213.1| excinuclease ABC, B subunit [Halothiobacillus neapolitanus c2] Length = 679 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/675 (54%), Positives = 487/675 (72%), Gaps = 27/675 (4%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F + TDY P+GDQPAAIA+L++G+ Q LLGVTGSGKTFT+A VI+ +QRPA+V Sbjct: 4 TRFTLVTDYQPAGDQPAAIARLVEGLQDGLAQQTLLGVTGSGKTFTIANVIDRLQRPALV 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M Sbjct: 64 LAPNKTLAAQLYGELKGFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D I+V++VS IYG+G ++Y +MI+ L G+ +Q+++L L + QY Sbjct: 124 RLSATKALLERRDVIIVATVSSIYGLGDPDAYLKMILHLVRGEKADQRQILRRLAEMQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ RGT+RV GD I+I PS +D RV +F ++IE+IS F PLTG R + Sbjct: 184 RNDMEFRRGTYRVRGDVIDIHPSESDDEGVRVELFDDEIEQISLFDPLTGAIRRRLPRFT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +SHYVTPR + A++ IK+EL +L L E +L+EAQRL QR +D+EM+ G Sbjct: 244 IYPSSHYVTPRERILAAVESIKDELTQQLDHLNAENKLVEAQRLAQRTRFDIEMMYELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR+PGEPPP L++Y+P D+LL +DESHVT+PQ+ MY+GD RK TL Sbjct: 304 CNGIENYSRYLSGRHPGEPPPCLYDYLPPDALLIIDESHVTVPQLGAMYKGDRSRKETLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPS +DNRPL+F+E+ + P TI VSATPG +E +VEQ++RPTGL+DP Sbjct: 364 NFGFRLPSALDNRPLKFDEFERMMPQTIHVSATPGPYEGSHS-AQVVEQVVRPTGLIDPQ 422 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +EIR +QV+DV EI A + R+L+T LTKRMAEDL +YL E ++RVRY+HS+V T Sbjct: 423 IEIRPVASQVDDVLSEIRDRASRRERVLITTLTKRMAEDLADYLAEHDVRVRYLHSDVDT 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG FD L+GINLLREGLDIPE LVAI DADKEGFLRS+ SLIQTIGRA Sbjct: 483 VERVEIIRDLRLGLFDALIGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTIGRA 542 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734 ARN++ K ILYAD IT +++ AIDET RRR KQ+EHN + I P+ + +++ +++ Sbjct: 543 ARNLHGKAILYADRITDAMRKAIDETDRRRAKQIEHNLEQGITPKGIDKRVDDILQSGDY 602 Query: 735 ---------------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 ++ E A+ ++++ ++Q+ K+ +A +M+ A +L Sbjct: 603 KIPGSRGASQRSRKMALVAEAASDFSVTMSSEQILKQIKEREA-------KMYRLAKDLE 655 Query: 780 FEEAARIRDEIKRLK 794 FE AA IRDEI RL+ Sbjct: 656 FEAAAHIRDEIHRLQ 670 >gi|226939888|ref|YP_002794961.1| excinuclease ABC subunit B [Laribacter hongkongensis HLHK9] gi|226714814|gb|ACO73952.1| UvrABC system protein B [Laribacter hongkongensis HLHK9] Length = 669 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/662 (54%), Positives = 472/662 (71%), Gaps = 20/662 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + P+GDQP AIA L++G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 12 YRLHQPFPPAGDQPTAIAGLVEGLSDGLAFQTLLGVTGSGKTYTMANVIARTGRPAIIMA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 72 PNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER DCI+V++VS IYGIG Y QMI+ LK GD Q++++ L QY R Sbjct: 132 SATKAILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGDKTAQRDIIKRLTVMQYDRA 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD I+IFP+ ++A R+S+F +++E + F PLTG+ V ++ Sbjct: 192 ELDFKRGTFRVRGDVIDIFPAESAELALRISLFDDEVETLHLFDPLTGRTDHRVGRFTVF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL R + + G+L+EAQR+EQR +DLEML G C+ Sbjct: 252 PSSHYVTPRATVLRACEAIKEELAARRMSFDLAGKLVEAQRIEQRTRFDLEMLYEMGFCK 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ PGE PPTL +Y+P+ +L+ +DESHVT+PQI GMY+GD RK L EY Sbjct: 312 GIENYSRHFSGKQPGEAPPTLIDYLPKSTLMIIDESHVTVPQIGGMYKGDRARKENLVEY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + P T+ VSATPG +E G +VEQ++RPTGLVDP + Sbjct: 372 GFRLPSALDNRPLKFEEFERMMPQTVFVSATPGPYEASHA-GQVVEQVVRPTGLVDPQIS 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAE LT+Y E IRVRY+HS++ T+E Sbjct: 431 VRPVTTQVDDLMSEITARAASNERVLVTTLTKRMAEQLTDYYTEHGIRVRYLHSDIDTVE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 491 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N ILYAD IT S++ AI ET RRR+KQ N+ + I P+ V++KI ++ID + E+ Sbjct: 551 NLNGLAILYADKITPSMERAIGETERRRQKQQAFNEANGIVPRGVQKKIKDIIDGVYHEE 610 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + K GK H +K KQM AA +L FEEAAR+RD++++ Sbjct: 611 TGAP-----------APKAGKLHDPKQLARLIKDTEKQMLDAARDLRFEEAARLRDQLRQ 659 Query: 793 LK 794 L+ Sbjct: 660 LR 661 >gi|295106063|emb|CBL03606.1| Excinuclease ABC subunit B [Gordonibacter pamelaeae 7-10-1-b] Length = 722 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/658 (54%), Positives = 493/658 (74%), Gaps = 2/658 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T ++ + Y PSGDQP AI +L +G+ + Q LLGVTGSGKTFTMAK IEA+Q+P +V Sbjct: 30 TPLKVVSPYEPSGDQPQAIEKLARGVEEGLRYQTLLGVTGSGKTFTMAKTIEAVQKPTLV 89 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQL SE K FFP+N+V YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++ Sbjct: 90 MAPNKTLAAQLASELKEFFPNNSVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 149 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R DCIVV+SVSCIYGIGS Y+ M V + +++ +++ L+ QY Sbjct: 150 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKEMDRDDVIHELIDIQYD 209 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D + RGTFRV GD++++FP + D R+ +G++IE I+E +TG+ + E + Sbjct: 210 RNDYELKRGTFRVRGDNLDVFPPYA-DNPLRIEFWGDEIERIAEVDNVTGEVVNEFEALP 268 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ SHYV RP ++ A+ I++EL+ RL + ++EG+LLEAQRLE R YDLEM+ET G Sbjct: 269 IWPASHYVATRPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRTNYDLEMMETMGF 328 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR++ GR+PGEPP TL +Y P+D L +DESHVT+PQI GM+ GD RK TLA Sbjct: 329 CSGIENYSRHIDGRSPGEPPYTLIDYFPKDFLCIIDESHVTVPQIRGMHEGDRSRKITLA 388 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPSC+DNRPLRF+E+ P + VSATPG +E + Q VEQIIRPTGL+DP Sbjct: 389 EHGFRLPSCLDNRPLRFDEFEERIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 447 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + +R + +Q++D+ DE A + R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T Sbjct: 448 IIVRGSASQIDDIIDESKDRAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 507 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER+EI+R+LR GKFDVLVGINLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRA Sbjct: 508 LERVEILRELRQGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 567 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ +VI+YAD IT S+ LAIDET RRR Q+++N+ H I PQ++++ I +++D + Sbjct: 568 ARNVSGQVIMYADKITDSMALAIDETKRRRTIQMQYNEDHGIEPQTIRKAINDIMDYVTD 627 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E TT ++A+ +LS+++ + S+ +M A+ ++++EEAAR+RD++ +L++S Sbjct: 628 EVGNTTAEQVNAELAALSREEVLRIIASMEDEMASASQSMDYEEAARLRDQVVKLRAS 685 >gi|302877894|ref|YP_003846458.1| excinuclease ABC, B subunit [Gallionella capsiferriformans ES-2] gi|302580683|gb|ADL54694.1| excinuclease ABC, B subunit [Gallionella capsiferriformans ES-2] Length = 691 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/659 (54%), Positives = 483/659 (73%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + P+GDQP AI QL++GI+ Q LLGVTGSGKT+TMA VI RPA+VMA Sbjct: 28 YRLHQPFEPAGDQPTAIEQLVEGINDGLAFQTLLGVTGSGKTYTMANVIARCGRPAMVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE ++FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INEQI++MR Sbjct: 88 PNKTLAAQLYSELRDFFPENAVEYFVSYYDYYQPEAYVPSRDVFIEKDSAINEQIEQMRL 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER DCI+V++VS IYGIG Y MI+ L+ + + Q+E++ L++ QY+R Sbjct: 148 SATKALLEREDCIIVATVSAIYGIGDPVDYHGMILHLRNNEKMHQREVIKRLIEMQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I++FP+ + A R+++F +++E +S F PLTG + V +Y Sbjct: 208 DVDFTRGRFRVRGDVIDVFPAESSEQALRITLFDDEVETLSLFDPLTGHIQQKVPRYTVY 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IK EL R+ E +L+EAQR+EQR +DLEML G + Sbjct: 268 PSSHYVTPRATVLQAIETIKVELAERIKYFVGENKLVEAQRIEQRTRHDLEMLTEIGFTK 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GRNPG+PPPTL +Y+P ++L+F+DESHV IPQ+ MY+GD RK L Y Sbjct: 328 GIENYSRHLSGRNPGDPPPTLLDYLPPNALMFLDESHVMIPQVGAMYKGDRARKENLVVY 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRF+E+ + ++ VSATP +E E G +VEQ++RPTGLVDP + Sbjct: 388 GFRLPSAMDNRPLRFDEFEHIMRQSVFVSATPSVYEAEHA-GQVVEQVVRPTGLVDPIIL 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ EI L + G R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T+E Sbjct: 447 VRPAINQVDDLMSEIRLRIKVGERVLVTTLTKRMSEDLTEYLSEHGVKVRYLHSDIDTVE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +++ ILYAD IT S++ A+DET RRR KQ+ HN +H I PQ V+++I ++I+ D Sbjct: 567 HLHGTAILYADRITDSMRRAMDETERRRTKQVAHNLEHGITPQGVQKRIKDIIEGTYELD 626 Query: 741 AATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A N +Q L++S+ + + L K+M AA NL FE+A +RD++K+L+ + Sbjct: 627 DARLNQKAAQEQAKYLAMSRAQVTKEINRLEKEMLAAAKNLEFEKATTLRDQLKKLRDN 685 >gi|83589120|ref|YP_429129.1| excinuclease ABC subunit B [Moorella thermoacetica ATCC 39073] gi|83572034|gb|ABC18586.1| Excinuclease ABC subunit B [Moorella thermoacetica ATCC 39073] Length = 663 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/657 (57%), Positives = 479/657 (72%), Gaps = 4/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P GDQP AIA L++G+ + Q LLG TG+GKT+TMA+VI+A+QRP +V+A Sbjct: 4 FILKSDYQPRGDQPRAIAALVEGLKKGYRHQTLLGATGTGKTYTMAQVIQAVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH Sbjct: 64 PNKTLAAQLCGEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E YS +++ L+ G ++ +L LV QY R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGSPEDYSTLMLSLREGQEYDRDAILRKLVDIQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IEIFP+ + A RV MFG++IE + E LTG+ + + ++ Sbjct: 184 DYDFKRGTFRVRGDVIEIFPASFTEKAIRVEMFGDEIERLLEIDTLTGEILGRRSHVAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+ EL+ RL EL +G+LLEAQRLEQR +DLEM+ G C+ Sbjct: 244 PASHYVVEEAKMERALESIQAELEERLRELRAQGKLLEAQRLEQRTNFDLEMMREVGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL +Y P+D L+ +DESH+T+PQI GMY GD RK TL EY Sbjct: 304 GIENYSRHLTGRAPGEPPYTLLDYFPDDFLMMIDESHITVPQIGGMYEGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE Q +VEQIIRPTGLVDP V Sbjct: 364 GFRLPSALDNRPLTFEEFCRHINQVIYVSATPGPYELEHSQQ-VVEQIIRPTGLVDPEVL 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTKRMAEDLT+YL E ++VRYMHS++ +E Sbjct: 423 VRPVKGQIDDLLAEIQKRVAKNQRVLVTTLTKRMAEDLTDYLREAGLKVRYMHSDIGAIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N +VI+YADTIT S++ AIDET RRR+ Q+E+N++H I P++V + + EVI+ E Sbjct: 543 NAEGQVIMYADTITDSMRRAIDETNRRRQIQMEYNRRHGITPRTVSKPVREVIEATRAAE 602 Query: 740 DAATTNISIDA--QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A + + ++ LSK++ KA + L K+M AA L FE AA +RD I L+ Sbjct: 603 EPARYETAGEGARKKTKLSKRELKALISQLEKEMRAAAKRLEFERAAELRDAILELR 659 >gi|264678870|ref|YP_003278777.1| excinuclease ABC subunit B [Comamonas testosteroni CNB-2] gi|262209383|gb|ACY33481.1| excinuclease ABC, B subunit [Comamonas testosteroni CNB-2] Length = 688 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/660 (55%), Positives = 481/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQPAAI +L++G++ E Q LLGVTGSGKTFTMA VI + +PAIV A Sbjct: 22 FELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIVFA 81 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 82 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 141 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+S++ER D ++V++VS IYGIG ESY +MI+ L+ GD++ Q++ ++ L++ QY+R Sbjct: 142 SCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQRN 201 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ +N+ IY Sbjct: 202 DQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQNIPRFTIY 261 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IKEEL RL +L G+L+EAQRLEQR +DLEML G C+ Sbjct: 262 PSSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGHCK 321 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+ PG+PP TL +Y+P D+++F+DESH I Q++ MY GD RK TL EY Sbjct: 322 GIENYTRHLSASKPGDPPSTLTDYLPRDAIMFLDESHQMIGQLNAMYNGDRARKTTLVEY 381 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E G +VEQ++RPTGLVDP +E Sbjct: 382 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPEIE 440 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + R+L+T LTKRMAE LTEYL + ++VRY+HS+V T+E Sbjct: 441 VRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDTVE 500 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 501 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 560 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD IT+S++ AI ET RRREKQ+ N+ + I P+ + +++ ++ID + E Sbjct: 561 NVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYSEK 620 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + Q L +S+K +K L KQM A NL FE+AAR+RD++ LK Sbjct: 621 SGKEAERLQEQALQQARVEDMSEKDIAKEIKRLEKQMLEHARNLEFEQAARVRDQLSLLK 680 >gi|332283991|ref|YP_004415902.1| excinuclease ABC subunit B [Pusillimonas sp. T7-7] gi|330427944|gb|AEC19278.1| excinuclease ABC subunit B [Pusillimonas sp. T7-7] Length = 677 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/654 (55%), Positives = 475/654 (72%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P+GDQP AIA L +G++ Q LLGVTGSGKT+TMA VI RPAIV+A Sbjct: 19 FQLYQPYPPAGDQPTAIAALTEGMNDGLMYQTLLGVTGSGKTYTMANVIARTGRPAIVLA 78 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP+NAVEYFVSYYDYYQPEAYV D +IEK+SSINE I++MR Sbjct: 79 PNKTLAAQLYAEMREFFPNNAVEYFVSYYDYYQPEAYVAARDLFIEKDSSINEHIEQMRL 138 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VSCIYGIG+ Y M++ L+ GD + ++ELL LV QY+R Sbjct: 139 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLTLRSGDRIARQELLGRLVAMQYERN 198 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FR G+ I++FP+ ++A R+++F ++IE + F PLTG+ + V ++ Sbjct: 199 DVEFTRGAFRARGEIIDVFPAEHAELALRITLFDDEIETLEMFDPLTGKIKQKVPRFTVF 258 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A++ IKEEL+ R L +G+L+EAQRLEQR +DLEML+ G C+ Sbjct: 259 PSSHYVTPRETVLRAIETIKEELRERSAVLVADGKLVEAQRLEQRTRFDLEMLQELGFCK 318 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVT+ Q+S MYRGD RK+TL ++ Sbjct: 319 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTMGQLSAMYRGDRSRKSTLVQF 378 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+ EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 379 GFRLPSAMDNRPLQLEEFEQRMRQCVFVSATPANYEKEHSDN-VVEQVVRPTGLVDPVVE 437 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI L R+L+T LTKRM+EDLT+YL E ++VRY+HS++ T+E Sbjct: 438 VRPALTQVDDLVGEIKLRIAVQERVLVTTLTKRMSEDLTDYLTENGLKVRYLHSDIDTVE 497 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 498 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 557 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S+ A+ ET RRR KQL+ NK+H I + V + + E+ID ++++ Sbjct: 558 NLNGKAILYADRITDSMYRAMGETERRRHKQLDFNKEHGITARGVSKAVREMIDGVMVDP 617 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + + + K ++ L K M A NL FE+AA RD + RLK Sbjct: 618 AQASAADLISPDVLRDDKSLAKEIRRLEKLMMDHAKNLEFEQAAAARDALNRLK 671 >gi|187923393|ref|YP_001895035.1| excinuclease ABC subunit B [Burkholderia phytofirmans PsJN] gi|187714587|gb|ACD15811.1| excinuclease ABC, B subunit [Burkholderia phytofirmans PsJN] Length = 697 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/679 (54%), Positives = 484/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 14 DESKFVRFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDI 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F ++IE + F PLTG Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIETLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL G+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSGGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILY D IT S++ AIDET RRR KQ+ N + I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYGDKITDSMRRAIDETERRRNKQIAFNLANGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ LK L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|209520642|ref|ZP_03269395.1| excinuclease ABC, B subunit [Burkholderia sp. H160] gi|209498925|gb|EDZ99027.1| excinuclease ABC, B subunit [Burkholderia sp. H160] Length = 697 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/679 (53%), Positives = 485/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK + F F++ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 14 DESKFVMFEGSPFKLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDV 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 194 ITRLIAMQYSRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVEALQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL +G+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVLRAVETIKAELRDRLEFFYSDGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN + G R+L+T LTKRMAE LTE+L + I+ Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERIKAGDRVLVTTLTKRMAEQLTEFLADHGIK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILY D IT S++ AIDET RRR KQ+ N H I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYGDNITDSMRRAIDETERRRAKQIAFNAAHGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + + A+ +S+K+ +K L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDEARAELKEQQVRAKFEDMSEKQLAKEIKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|157146587|ref|YP_001453906.1| excinuclease ABC subunit B [Citrobacter koseri ATCC BAA-895] gi|189037956|sp|A8AJ07|UVRB_CITK8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157083792|gb|ABV13470.1| hypothetical protein CKO_02348 [Citrobacter koseri ATCC BAA-895] Length = 673 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/669 (56%), Positives = 480/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ ++ IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTIQRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R +++ +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKDELVDRRRIMQENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GM+RGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMFRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQLYNEEHGIVPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ ++ ++ K + + L QM A NL FEEAA Sbjct: 598 ALGQNIAKTKAKGKGKSRAAAKSGVVEMDMTPKALQQKIHELEGQMMQHAQNLEFEEAAE 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|291616772|ref|YP_003519514.1| UvrB [Pantoea ananatis LMG 20103] gi|291151802|gb|ADD76386.1| UvrB [Pantoea ananatis LMG 20103] gi|327393198|dbj|BAK10620.1| UvrABC system protein B UvrB [Pantoea ananatis AJ13355] Length = 673 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/671 (55%), Positives = 476/671 (70%), Gaps = 15/671 (2%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 SKD F++ + + PSGDQP AI +L G+ Q LLGVTGSGKTFT+A VI + R Sbjct: 2 SKD---FKLNSAFKPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTVANVIADLNR 58 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +V+APNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE Sbjct: 59 PTMVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I++MR SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSE 178 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V Sbjct: 179 LQYTRNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGQVESVV 238 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 IY +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ Sbjct: 239 PRFTIYPKTHYVTPRERILQAMEDIKVELADRRKTLLENNKLLEEQRITQRTQFDLEMMG 298 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK Sbjct: 299 ELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL EYGFRLPS +DNRP++FEE+ L P TI VSATPG +ELE+ +++Q++RPTGL Sbjct: 359 ETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E+R TQV+D+ EI R+L+TVLTKRMAEDLTEYL E +VRY+HS Sbjct: 419 LDPILEVRPVATQVDDLLSEIRQRVTINERVLVTVLTKRMAEDLTEYLEEHGEKVRYLHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T+ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT Sbjct: 479 DIDTVERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN+N K ILY D IT S+ AI+ET RRREKQ HN+++ I PQ + +KI ++++ Sbjct: 539 IGRAARNINGKAILYGDKITPSMARAIEETERRREKQQRHNEENGIVPQGLNKKITDILE 598 Query: 735 PILLEDAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 L + T DA L+LS + + + L QM A NL FE+AA Sbjct: 599 --LGNNVVKTRGKAKPAKRNAAEADADYLALSPQALQKKIHELEGQMQQHAQNLEFEQAA 656 Query: 785 RIRDEIKRLKS 795 +RD+++ L++ Sbjct: 657 GLRDQLQELRT 667 >gi|332526729|ref|ZP_08402831.1| excinuclease ABC subunit B [Rubrivivax benzoatilyticus JA2] gi|332111132|gb|EGJ11164.1| excinuclease ABC subunit B [Rubrivivax benzoatilyticus JA2] Length = 703 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/668 (54%), Positives = 484/668 (72%), Gaps = 8/668 (1%) Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 +TF FQ+ Y P+GDQP AI QL++G+H Q LLGVTGSGKTFTMA VI + Sbjct: 17 VTFADSPFQLFQPYPPAGDQPTAINQLVEGVHDGLSYQTLLGVTGSGKTFTMANVIARLG 76 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE Sbjct: 77 RPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINE 136 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 I++MR SAT+S+LER D ++V++VS IYGIG E Y+QM + +++GD + Q+++++ LV Sbjct: 137 HIEQMRLSATKSILERRDVVIVATVSAIYGIGKPEDYTQMRLIVRVGDKMGQRDVIARLV 196 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY R +I RG+FRV GD+I++FP+ ++A R+ +F ++IE ++ PLTG+ + Sbjct: 197 AMQYTRNEIDFGRGSFRVRGDTIDVFPAEHSELALRIELFDDEIESLALLDPLTGRVRQK 256 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 V IY +SHYVTPR + A+ IK EL+ R+ K G+L+EAQR+EQR +D+EML Sbjct: 257 VPRFVIYPSSHYVTPREQVLRAVDGIKAELRERVDFFVKNGKLVEAQRVEQRTRFDVEML 316 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 + G C+ IENY+R+L+G PGEPP TL +Y+P D+++F+DESHV I Q GMY GD R Sbjct: 317 QEVGHCKGIENYTRHLSGAAPGEPPSTLVDYLPRDAIMFLDESHVLIGQFGGMYNGDRAR 376 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPLRFEE+ + V+ATP +E + G +VEQ++RPTG Sbjct: 377 KTTLVEYGFRLPSALDNRPLRFEEFERRMRQAVFVTATPADYE-KTHSGQVVEQVVRPTG 435 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 LVDP VE+R A TQV+DV EI R+L+T LTKRMAE LT+YL + ++VRY+H Sbjct: 436 LVDPEVEVRPASTQVDDVLQEIRERVDVNERVLITTLTKRMAEQLTDYLSDNGVKVRYLH 495 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQ Sbjct: 496 SDIDTVERVEILRDLRLGLFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQ 555 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAARN K ILYAD IT S++ AIDET RRR KQ+ HN+ I P++V ++I ++I Sbjct: 556 TIGRAARNARGKAILYADKITDSMRRAIDETERRRAKQIAHNEAMGIVPRTVNKRIRDLI 615 Query: 734 DPILLEDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D ++ + A + A+ ++S+K +K+L KQM A NL FE+AAR+RD++ Sbjct: 616 DGVVSDKTAKDELQSAQAAAEVEAMSEKDLGKRIKALEKQMLEHARNLEFEKAARVRDQL 675 Query: 791 KRLKSSPY 798 L+ + Sbjct: 676 ALLREQAF 683 >gi|269216206|ref|ZP_06160060.1| excinuclease ABC subunit B [Slackia exigua ATCC 700122] gi|269130465|gb|EEZ61543.1| excinuclease ABC subunit B [Slackia exigua ATCC 700122] Length = 719 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/666 (55%), Positives = 486/666 (72%), Gaps = 6/666 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA L +G+ + Q LLGVTGSGKTFTMAK IEA+Q+P +VMA Sbjct: 27 FKVVSPYEPSGDQPQAIASLAEGVERGLRYQTLLGVTGSGKTFTMAKTIEAVQKPTLVMA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E K FFPHNAV YFVSYYDYYQPEAYVP+TDT+IEK++SINE+++++RH Sbjct: 87 PNKTLAAQLAAELKEFFPHNAVVYFVSYYDYYQPEAYVPQTDTFIEKDASINEEVEKLRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL R D IVV+SVSCIYGIGS Y+ M V + E+ +++ L+ QY R Sbjct: 147 AATSSLLSRRDVIVVASVSCIYGIGSPMDYAGMAVFVDRQKPAERDDVIHQLIDIQYDRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD++++FP + D R+ +G++IE I E LTG+ + + E I I+ Sbjct: 207 DYELSRGTFRVRGDALDVFPPY-ADNPLRIEFWGDEIESIQEIDNLTGEVLMSFEAIPIW 265 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT RP + A+ I+EEL+ RL +L EG+LLEAQRLE R YDLEMLET G C Sbjct: 266 PASHYVTARPKMRKAIGTIQEELRGRLEQLRAEGKLLEAQRLEMRTNYDLEMLETMGFCS 325 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR+PGEPP TL +Y P+D L +DESHVT+PQI GM+ GD RK TLAE+ Sbjct: 326 GIENYSRHLDGRSPGEPPYTLIDYFPDDFLCIIDESHVTVPQIRGMHEGDRSRKVTLAEH 385 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF+E+ P I VSATPG +E + VEQIIRPTGL+DP +E Sbjct: 386 GFRLPSCLDNRPLRFDEFEERVPQFIYVSATPGDYE-NRVSERRVEQIIRPTGLLDPEIE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +Q++D+ DE + R+L+T LTK+MAEDLT++L ++ IR RYMHS++ TLE Sbjct: 445 VRPIASQIDDIIDEARARSDAHERVLITTLTKKMAEDLTDHLLDQGIRSRYMHSDIGTLE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRAAR Sbjct: 505 RVEILRDLRTGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRNHRSLIQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT S+ LAI ET RRR Q+ +N++H I P+++++ I +V+ I D Sbjct: 565 NVSGKVIMYADKITDSMDLAITETRRRRAIQMAYNEEHGIEPKTIRKAINDVMGFITDGD 624 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 + D ++ +G+ + + ++M A+++++FEEAAR+RD++ +L++ Sbjct: 625 NNEVGTAEDVNKVLAELSRGEVMRIIAGMEEEMASASESMDFEEAARLRDQVVKLRAQ-- 682 Query: 799 FQGLDD 804 +G D+ Sbjct: 683 MEGTDE 688 >gi|163857092|ref|YP_001631390.1| excinuclease ABC subunit B [Bordetella petrii DSM 12804] gi|229557958|sp|A9IR19|UVRB_BORPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|163260820|emb|CAP43122.1| excinuclease ABC subunit B [Bordetella petrii] Length = 675 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/642 (56%), Positives = 466/642 (72%), Gaps = 1/642 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQPAAI L +G+ Q LLGVTGSGKT+TMA +I + RPA+V+A Sbjct: 14 FHLYQPYPPAGDQPAAIEGLAQGMRDGLMYQTLLGVTGSGKTYTMANIIARLGRPALVLA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 74 PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRAGDRISRREVLARLVAMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++++IFP+ ++A R+++F ++IE + F PLTG+ + V +Y Sbjct: 194 DADFARGTFRVRGETLDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKVPRFTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IKEEL+ RL L EG+L+EAQRLEQR +DLEML+ G C+ Sbjct: 254 PGSHYVTPRDTVLRAIETIKEELRDRLKLLTAEGKLVEAQRLEQRTRFDLEMLQELGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVT+ Q+ GMYRGD RK TL +Y Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTMGQLGGMYRGDRARKETLVQY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHSDN-VVEQVVRPTGLVDPQVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ARTQV+D+ EI L R+L+T LTKRMAEDLT++L E +RVRY+HS++ T+E Sbjct: 433 VRPARTQVDDLLGEIKLRVAAQERVLVTTLTKRMAEDLTDFLAEHGVRVRYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 493 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N ILYAD IT S++ A+DET RRR KQL N +H I + V + + E+ID I+ Sbjct: 553 NLNGHAILYADAITASMRRAMDETERRRTKQLAFNAEHGITARGVNKAVRELIDGIVAPA 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 T S A ++ +K ++ L K M A NL FE+ Sbjct: 613 RHDTLESAIAPEVLADEKSVAREIRRLEKLMTDHARNLEFEQ 654 >gi|299532419|ref|ZP_07045811.1| excinuclease ABC subunit B [Comamonas testosteroni S44] gi|298719657|gb|EFI60622.1| excinuclease ABC subunit B [Comamonas testosteroni S44] Length = 688 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/660 (55%), Positives = 480/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQPAAI +L++G++ E Q LLGVTGSGKTFTMA VI + +PAIV A Sbjct: 22 FELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIVFA 81 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 82 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 141 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+S++ER D ++V++VS IYGIG ESY +MI+ L+ GD++ Q++ ++ L++ QY+R Sbjct: 142 SCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQRN 201 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ +N+ IY Sbjct: 202 DQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQNIPRFTIY 261 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A++ IKEEL RL +L G+L+EAQRLEQR +DLEML G C+ Sbjct: 262 PGSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGHCK 321 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+ PG+PP TL +Y+P D+++F+DESH I Q++ MY GD RK TL EY Sbjct: 322 GIENYTRHLSASQPGDPPSTLTDYLPRDAIMFLDESHQMIGQLNAMYNGDRARKTTLVEY 381 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E G +VEQ++RPTGLVDP +E Sbjct: 382 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPEIE 440 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + R+L+T LTKRMAE LTEYL + ++VRY+HS+V T+E Sbjct: 441 VRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDTVE 500 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 501 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 560 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD IT+S++ AI ET RRREKQ+ N+ + I P+ + +++ ++ID + E Sbjct: 561 NVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYSEK 620 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + Q L +S+K +K L KQM A NL FE+AAR+RD++ LK Sbjct: 621 SGKEAERLQEQALQQARVEDMSEKDIAKEIKRLEKQMLEHARNLEFEQAARVRDQLSLLK 680 >gi|294340539|emb|CAZ88923.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Thiomonas sp. 3As] Length = 697 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/668 (55%), Positives = 481/668 (72%), Gaps = 6/668 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AIAQL +G+ Q LLGVTGSGKT+TMA VI M RPAIV A Sbjct: 23 FRLYQPYPPAGDQPTAIAQLAEGLGDGLSYQTLLGVTGSGKTYTMANVIARMGRPAIVFA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 83 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V+SVS IYGIG+ Y MI+ ++ GD + Q+++++ LV+ QY+R Sbjct: 143 SATKSLLERRDVVIVASVSAIYGIGNPSDYHAMILTVRTGDRMGQRDVIAQLVRMQYQRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD I++FP+ ++A R+ +F ++IE +S F PLTG + + IY Sbjct: 203 EVDFTRGTFRVRGDRIDVFPAEHAELAVRIELFDDEIESLSLFDPLTGVVRQKIPRFTIY 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A + IK+EL+ R+ EL G+L+EAQRLEQR +DLEML G C+ Sbjct: 263 PSSHYVTPREKVLEAAEGIKQELRERVKELTGMGKLVEAQRLEQRTRFDLEMLTEIGHCK 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+++F+DESHV I Q +GMY GD RK TL +Y Sbjct: 323 GIENYSRHLSGAAPGEPPPTLVDYLPPDAIMFLDESHVLIGQFNGMYNGDRARKQTLVDY 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ T+ VSATP +E + +VEQ++RPTGLVDP +E Sbjct: 383 GFRLPSALDNRPLKFAEFERKMRQTVFVSATPADYESQHADQ-VVEQVVRPTGLVDPLIE 441 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+DV EI L +G R+L+T LTKRMAE LT+YL E ++VRY+HS++ T+E Sbjct: 442 VRPASSQVDDVLGEIRLRVNKGERVLITTLTKRMAEQLTDYLDENGVKVRYLHSDIDTVE 501 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 502 RVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 561 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILY D IT S++ AIDET RRR KQ+ N +H I P ++ + + ++ID ++ Sbjct: 562 NVNGMAILYGDRITDSMRRAIDETERRRAKQIAFNTEHGITPTALNKSVRDLIDGVVQTP 621 Query: 741 AA---TTNISIDAQQLSLSKKKGKA-HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + +L + + A +K L K+M A NL FE+AAR+RD++ L+ Sbjct: 622 GKGLRAGSVEREIAELQIDNAQDVAREIKRLEKRMIEHARNLEFEQAARVRDQLGLLRQR 681 Query: 797 PYFQGLDD 804 F G DD Sbjct: 682 -VFGGGDD 688 >gi|283833926|ref|ZP_06353667.1| excinuclease ABC subunit B [Citrobacter youngae ATCC 29220] gi|291070598|gb|EFE08707.1| excinuclease ABC subunit B [Citrobacter youngae ATCC 29220] Length = 673 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/662 (56%), Positives = 473/662 (71%), Gaps = 8/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELAERRKILLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N+N K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ Sbjct: 545 NINGKAILYGDKITASMARAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQSIA 604 Query: 734 -DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + + D +L ++ K + + L QM A NL FEEAA IRD++ + Sbjct: 605 KTKAKGKGKSRAGAKSDVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAATIRDQLHQ 664 Query: 793 LK 794 L+ Sbjct: 665 LR 666 >gi|115380116|ref|ZP_01467152.1| excinuclease ABC, B subunit [Stigmatella aurantiaca DW4/3-1] gi|310820625|ref|YP_003952983.1| UvrABC system protein B [Stigmatella aurantiaca DW4/3-1] gi|115362876|gb|EAU62075.1| excinuclease ABC, B subunit [Stigmatella aurantiaca DW4/3-1] gi|309393697|gb|ADO71156.1| UvrABC system protein B [Stigmatella aurantiaca DW4/3-1] Length = 702 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/659 (54%), Positives = 471/659 (71%), Gaps = 11/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P GDQP AIA+L +G+ ++ Q LLGVTGSGKTFTMA +I +QRP +++A Sbjct: 10 FQIVSAHAPQGDQPRAIAELTEGVLRGDRYQTLLGVTGSGKTFTMANLIANVQRPTLIIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSIN++I+RMRH Sbjct: 70 HNKTLAAQLYGEFKEVFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDEIERMRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL R+D ++V+SVSCIYG+G+ SY M + +G + + + L++ QY+R Sbjct: 130 SATHSLRTRDDVVIVASVSCIYGLGAARSYVDMAATVTLGAELGRDAFMRKLIESQYERS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR GD++E+FP++ E+ A RVS FG+++E+I+EF PL G + ++ I I+ Sbjct: 190 DFDFHRGTFRARGDTVEVFPAYEEERAVRVSFFGDEVEKITEFDPLRGVTLGTLDKIVIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T T A++ I++EL RL E +++G+LLEAQR+EQR +DLEM+E G C Sbjct: 250 PASHYATEGDTRKKAVQTIRDELSERLQEFKRDGKLLEAQRIEQRTMFDLEMIEQVGFCN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PGEPPP L +Y P + L+ VDESH T+ QI MYRGD RK TL Y Sbjct: 310 GIENYSRHFSGRAPGEPPPCLIDYFPRNMLVLVDESHQTVSQIGAMYRGDRSRKETLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + + VSATP +EL++ +G++VEQIIRPTGL DP VE Sbjct: 370 GFRLPSALDNRPLKFTEFEEMVQQAVFVSATPAEYELQKSKGVVVEQIIRPTGLTDPEVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R AR QV+D+ +E+ Q R+L T LTKRMAEDLTEY + ++VRY+HS++ +E Sbjct: 430 VRPARNQVDDLLEEVRKRVAQKERVLATTLTKRMAEDLTEYFTDVGVKVRYLHSDIGAIE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRDLR G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RTAIIRDLRKGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-----IDP 735 N++ VI+Y+D+IT S++ AI+ET RRRE Q +N++H I P+SVK I+++ DP Sbjct: 550 NLHGHVIMYSDSITDSMKRAIEETRRRREVQRAYNQEHGITPRSVKSAILDLSLQYDADP 609 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L AA DA L K+ K ++ K M AAD + FE+AA+ RD I LK Sbjct: 610 TALPLAA------DAANDVLDTKEIKRLIEEFTKDMQHAADEMQFEKAAQFRDRIVLLK 662 >gi|168240658|ref|ZP_02665590.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449193|ref|YP_002044826.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238690602|sp|B4TC52|UVRB_SALHS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|194407497|gb|ACF67716.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339909|gb|EDZ26673.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 673 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSAMDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ +L ++ K + + L QM A NL FEEAA+ Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|296162458|ref|ZP_06845249.1| excinuclease ABC, B subunit [Burkholderia sp. Ch1-1] gi|295887271|gb|EFG67098.1| excinuclease ABC, B subunit [Burkholderia sp. Ch1-1] Length = 697 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/679 (53%), Positives = 487/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK ++F FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 14 DESKFVSFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANT 73 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 74 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHRMILTLRTGDKLGQRDI 193 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL G+L+EAQRLEQR + Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFYSGGKLVEAQRLEQRTRF 313 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 373 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQL 432 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTKRMAEQLTEFLADHGVK 492 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ N ++ I P+ V ++ Sbjct: 553 RSLIQTIGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQIAFNLENGITPRGVVKR 612 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ LK L KQM A NL FE+AA+ Sbjct: 613 IRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 673 TRDQLALLRQRVFGANVGD 691 >gi|121594498|ref|YP_986394.1| excinuclease ABC subunit B [Acidovorax sp. JS42] gi|120606578|gb|ABM42318.1| excinuclease ABC, B subunit [Acidovorax sp. JS42] Length = 698 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AIA+L++G+ E Q LLGVTGSGKTFTMA VI + RPAI+ A Sbjct: 25 FSLYQPYPPAGDQPEAIAKLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIIFA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 85 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SLLER D ++V++VS IYGIG ESY +MI+ L++GD + Q++ ++ L++ QY+R Sbjct: 145 SCTKSLLERRDVVIVATVSAIYGIGEPESYHRMIMTLRVGDQLSQRDAIAQLIRMQYQRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG FRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ + + +Y Sbjct: 205 EQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRIQQKIPRFTVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK+EL RL EG+L+EAQRLEQR +DLEML G C+ Sbjct: 265 PSSHYVTPRDKVLAAVETIKQELDERLKFFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PGEPP TL +Y+P D+L+F+DESH I Q++ MY GD RK TL EY Sbjct: 325 GIENYTRHLSGSAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRARKTTLVEY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E E G +V+Q++RPTGLVDP VE Sbjct: 385 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQVVDQVVRPTGLVDPEVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + Q+ R+L+T LTKRMAE LT+YL + ++VRY+HS++ T+E Sbjct: 444 VRPATHQVDDVLQEIRICTQKNQRVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD IT S++ AI+ET RRR KQ+ +N+ I P+S+ +++ ++ID + E Sbjct: 564 NLHGKAILYADRITDSMRKAINETERRRAKQIAYNEARGITPRSIVKQVRDLIDGVYSEK 623 Query: 741 AAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + A+ +S+K +K L K M A NL FE+AAR+RD++ RLK Sbjct: 624 AGQEAQRLREDAARQAELEEMSEKDIAREIKRLEKLMLEHARNLEFEQAARVRDQLTRLK 683 >gi|146310929|ref|YP_001176003.1| excinuclease ABC subunit B [Enterobacter sp. 638] gi|189037969|sp|A4W8C2|UVRB_ENT38 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|145317805|gb|ABP59952.1| Excinuclease ABC subunit B [Enterobacter sp. 638] Length = 673 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 474/665 (71%), Gaps = 12/665 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+ Sbjct: 4 MFKLNSAFRPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMVL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 124 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTNGMIIDQRAILRRLAELQYAR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG ++ + Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESDDLALRVELFDEEVERLSLFDPLTGHVDSVIQRFTV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK EL R L + +LLE QRL QR +DLEM+ G C Sbjct: 244 YPKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLSQRTQFDLEMMNELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL E Sbjct: 304 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDPII 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ Sbjct: 424 EVRPVGTQVDDLLSEIRARAIINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K ILY D IT S+ AI ET RRREKQ ++N + I PQ + +K+++++ L + Sbjct: 544 RNINGKAILYGDRITASMAKAISETERRREKQHQYNLDNGIVPQGLNKKVVDIL--ALGQ 601 Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A T + D +L L+ K + + L M A NL FEEAA++RD+ Sbjct: 602 GLAKTKAKGRGKSRSPVEADPVELVLTPKALQQKIHELEGLMMQHAQNLEFEEAAQVRDQ 661 Query: 790 IKRLK 794 + +L+ Sbjct: 662 LHQLR 666 >gi|242239861|ref|YP_002988042.1| excinuclease ABC subunit B [Dickeya dadantii Ech703] gi|242131918|gb|ACS86220.1| excinuclease ABC, B subunit [Dickeya dadantii Ech703] Length = 670 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/659 (56%), Positives = 480/659 (72%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 5 FKLHSAFQPAGDQPEAIRRLEEGLGDGLAHQTLLGVTGSGKTFTIANVIADLNRPAMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTGQ I+ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGQLIQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR T+DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRQSGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLDPELE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRSVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILYAD IT S++ A++ET RRREKQ +N+KH I PQ + +K+ +++ P Sbjct: 545 NLNGKAILYADRITPSMERAMNETQRRREKQQAYNEKHGIVPQGLNKKVTDILQIGQPTG 604 Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + + A LS K + ++ L QM A NL FEEAAR+RDE+ LK Sbjct: 605 QKGKGRSKKAAEPAAGYAQLSPKALEQKMRELENQMLAHAQNLEFEEAARLRDELHALK 663 >gi|187478007|ref|YP_786031.1| excinuclease ABC subunit B [Bordetella avium 197N] gi|123515216|sp|Q2L244|UVRB_BORA1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|115422593|emb|CAJ49118.1| excinuclease ABC subunit B [Bordetella avium 197N] Length = 676 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/665 (55%), Positives = 485/665 (72%), Gaps = 6/665 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P+GDQPAAI L++G+ Q LLGVTGSGKTFTMA VI + RPA+V+A Sbjct: 14 FQLFQPYAPAGDQPAAIEGLVQGVADGLMYQTLLGVTGSGKTFTMANVIARLGRPALVLA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E ++FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SS+NE I++MR Sbjct: 74 PNKTLAAQLYAEMRDFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSVNEHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 134 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDRISRREVLARLVAMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+IFP+ ++A R+++F +++E + F PLTG+ + + +Y Sbjct: 194 DADFTRGAFRVRGETIDIFPAESPELALRLTLFDDEVETLELFDPLTGKVRQKLPRFTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ I+EEL+ RL EG+LLEAQR+EQR +DLEML+ G C+ Sbjct: 254 PGSHYVTPRETVLRAIETIREELRERLSTFTNEGKLLEAQRIEQRTRFDLEMLQELGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVT+ Q+ GMYRGD RK TL +Y Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTVGQLGGMYRGDRARKETLVQY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATP +E + +VEQ++RPTGLVDP VE Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPADYERQHADN-VVEQVVRPTGLVDPEVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI + R+L+T LTKRM+EDLT++L E +RVRY+HS++ T+E Sbjct: 433 VRPAHTQVDDLLGEIRHRVARQERVLVTTLTKRMSEDLTDFLAEHGVRVRYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 493 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ ILYAD IT S++ A+DET+RRR KQL+HN H I + V + + E+ID ++ Sbjct: 553 NLHGHAILYADRITDSMRRAMDETSRRRSKQLQHNADHGITARGVNKAVRELIDGVMA-- 610 Query: 741 AATTNISI-DAQQL-SLSKKKGKA-HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 ATT+ ++ DA L +L+ +K A +K L K M A NL FE+AA RD + LK+ Sbjct: 611 PATTHDALEDAVPLAALTDEKAMAREIKRLEKLMMDHARNLEFEQAAAARDALTALKNRL 670 Query: 798 YFQGL 802 G+ Sbjct: 671 LLDGV 675 >gi|323701478|ref|ZP_08113151.1| excinuclease ABC, B subunit [Desulfotomaculum nigrificans DSM 574] gi|323533487|gb|EGB23353.1| excinuclease ABC, B subunit [Desulfotomaculum nigrificans DSM 574] Length = 672 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/654 (54%), Positives = 475/654 (72%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P GDQP AI +L++G+H K Q LLG TG+GKTFTMA +I+ QRP +++A Sbjct: 3 FKLRSEFQPRGDQPRAIRELVQGLHQGYKHQTLLGATGTGKTFTMANIIQQTQRPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SEFK FFP N VEYFVSY+DYYQPEAY+P TDTYIEK+SSIN++ID++RH Sbjct: 63 PNKTLAAQLCSEFKEFFPENCVEYFVSYFDYYQPEAYIPHTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LLER D I+V+SVSCIYG+G+ E+Y +++ L++G ++ +L LV QY+R Sbjct: 123 AATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGVYDRDAILRKLVDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ D A RV MFG+++E + E LTG+ + + I ++ Sbjct: 183 DLNFTRGKFRVRGDVIEIFPASATDRALRVEMFGDEVERLLEIDVLTGEILGQRQHIAVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I+ EL+ RL EL + G+LLEAQRLEQR YDLEM+ G C Sbjct: 243 PASHFVTEEENMKRAIANIELELEQRLQELRQNGKLLEAQRLEQRTRYDLEMMAEVGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGE P TL ++ PED LL +DESHV +PQI GMY GD RK TL E+ Sbjct: 303 GIENYSRHLTGRAPGEAPYTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I VSATPG++ELE +VEQIIRPTGLVDP + Sbjct: 363 GFRLPSALDNRPLKFAEFESKVNQVIYVSATPGNYELEHSSQ-VVEQIIRPTGLVDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI L ++ RIL+T LTK+MAEDLT+YL E IRVRY+HS++ T+E Sbjct: 422 VRPTRGQIDDLLGEIRLRVERDERILVTTLTKKMAEDLTDYLKEHGIRVRYLHSDINTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQTIGRAAR Sbjct: 482 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S++ AI ET RRR+ Q+ +N+KH I PQ+V++ + +VI+ + Sbjct: 542 NAEGKVIMYADKMTDSMKKAIGETERRRQIQMAYNQKHGITPQTVRKAVRDVIEATRAAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++K K + L K+M +A +L FE AA++RD I L+ Sbjct: 602 EKAPYVA-KTKAGKMTKTDIKKMIAKLEKEMKESAKHLEFERAAQLRDAIIELR 654 >gi|91782672|ref|YP_557878.1| excinuclease ABC subunit B [Burkholderia xenovorans LB400] gi|91686626|gb|ABE29826.1| Excinuclease ABC subunit B [Burkholderia xenovorans LB400] Length = 701 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/679 (53%), Positives = 487/679 (71%), Gaps = 8/679 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK ++F FQ+ Y P+GDQP AI L++G+ Q LLGVTGSGKTFTMA Sbjct: 18 DESKFVSFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANT 77 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 78 IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 137 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+ Y +MI+ L+ GD + Q+++ Sbjct: 138 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHRMILTLRTGDKLGQRDI 197 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R + RG+FRV GD+I+IFP+ ++A RV +F +++E + F PLTG Sbjct: 198 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 257 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y +SHYVTPR T+ A++ IK EL+ RL G+L+EAQRLEQR + Sbjct: 258 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFYAGGKLVEAQRLEQRTRF 317 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEML+ G C+ IENYSR+ +G PGEPPPTL +Y+P D+++ +DESHV I Q++GMY Sbjct: 318 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 377 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F E+ + VSATP +E ++ G + EQ+ Sbjct: 378 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQL 436 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP +E+R AR+QV+DV EIN + G R+L+TVLTKRMAE LTE+L + ++ Sbjct: 437 VRPTGLVDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTKRMAEQLTEFLADHGVK 496 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ Sbjct: 497 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 556 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ N ++ I P+ V ++ Sbjct: 557 RSLIQTIGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQIAFNLENGITPRGVVKR 616 Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++ID + D A + A+ +S+K+ LK L KQM A NL FE+AA+ Sbjct: 617 IRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLARELKRLEKQMMEHAKNLEFEKAAQ 676 Query: 786 IRDEIKRLKSSPYFQGLDD 804 RD++ L+ + + D Sbjct: 677 TRDQLALLRQRVFGANVGD 695 >gi|297618025|ref|YP_003703184.1| excinuclease ABC subunit B [Syntrophothermus lipocalidus DSM 12680] gi|297145862|gb|ADI02619.1| excinuclease ABC, B subunit [Syntrophothermus lipocalidus DSM 12680] Length = 667 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/656 (55%), Positives = 474/656 (72%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++++Y P+GDQP AI +++G+ + Q L+GVTGSGKTFTMA +I +QRPA+V+A Sbjct: 3 FKLRSEYKPTGDQPQAIKAIVEGVRRGYRHQTLMGVTGSGKTFTMAHIINELQRPALVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LA QLY+EF+ FFP NAVEYF+SYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH Sbjct: 63 PNKTLAGQLYAEFREFFPENAVEYFISYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+GS E Y +M++ L+ G + ELL LV+ Y+R Sbjct: 123 SATAALLERRDVIIVASVSCIYGLGSPEDYGEMVISLRPGMETGRDELLKRLVENLYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RG FRV GD +E+ P + A R+ FG++IE I EF PLTG+ + + I+ Sbjct: 183 EIDFSRGKFRVRGDVVELMPVSAGENAIRIEFFGDEIERILEFNPLTGEILGRRTHVSIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+T R + A I++EL+ R+ L+KEG+LLEAQRL R YDLEM+ G C+ Sbjct: 243 PASHYITTREKMLRAAAEIEKELEERVELLKKEGKLLEAQRLAHRTRYDLEMIREIGYCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+TGR PGEPP TL ++ P D ++F+DESH+ IPQ+ GMY GD RK TL +Y Sbjct: 303 GIENYSRYITGRQPGEPPYTLIDFFPRDFIVFIDESHIGIPQLRGMYEGDRSRKQTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL FEE+ I VSATPG +ELE +VEQIIRPTGLVDP VE Sbjct: 363 GFRLPSAMDNRPLTFEEFEAKVKQCIYVSATPGPYELENSSQ-VVEQIIRPTGLVDPEVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI L +G R+L+T LTKRMAE+LT+YL + RVRYMHSE+ LE Sbjct: 422 VRPTQNQIDDLMKEIRLKVDKGYRVLVTTLTKRMAEELTDYLSDAGFRVRYMHSEIDALE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 482 RMDILRGLRLGEFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSERSLVQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YAD +T +++ AIDET RRR QLE+N +H I P++V + I I+ + E+ Sbjct: 542 NVEGKVIMYADHVTSAMKAAIDETNRRRAIQLEYNHQHGITPRTVTKSIRPPIEATIAEE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 S L+ ++ K L L +M AA+ L FE AA +RD I++ + + Sbjct: 602 PEEYRSSTFE---GLNARERKRLLTELELEMRRAAEMLEFERAAYLRDLIRQAEGT 654 >gi|212712173|ref|ZP_03320301.1| hypothetical protein PROVALCAL_03255 [Providencia alcalifaciens DSM 30120] gi|212685220|gb|EEB44748.1| hypothetical protein PROVALCAL_03255 [Providencia alcalifaciens DSM 30120] Length = 672 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/674 (55%), Positives = 476/674 (70%), Gaps = 22/674 (3%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 SKD F++ +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI R Sbjct: 2 SKD---FKLYSDFQPAGDQPEAIRKLREGLEDGLAHQTLLGVTGSGKTFTIANVIAQENR 58 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P ++MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE Sbjct: 59 PTMLMAHNKTLAAQLYSEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I++MR SAT++LLER D IVV+SVS IYG+G +SY +M++ L G ++Q+ +L L Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLAD 178 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTG V Sbjct: 179 LQYTRNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDEEVERLSLFDPLTGAIQHRV 238 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 +Y +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ Sbjct: 239 PRFTVYPKTHYVTPRERILEAMENIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMS 298 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI MY+GD RK Sbjct: 299 ELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRK 358 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL EYGFRLPS +DNRP+RFEE+ L P TI VSATPG++EL++ ++EQ++RPTGL Sbjct: 359 ETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELDKSGQEVIEQVVRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E+R TQV+D+ EI + Q+ R+L+T LTKRMAEDLTEYL E RVRY+HS Sbjct: 419 LDPLIEVRPVATQVDDLLSEIRIRVQKQERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN+N K ILY D IT S+ AI ET RRR KQ+ N+ H I PQ + +K+ +++ Sbjct: 539 IGRAARNLNGKAILYGDRITNSMGKAIAETERRRAKQMAFNEAHGIIPQGLNKKVGDILQ 598 Query: 735 PIL-------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 ++D + N+ S+S K+ + + L QM+ A +L FE Sbjct: 599 IGHKVGGKGKGRSKESIKDESALNVQ------SMSTKELEQRISQLESQMYKHAQDLEFE 652 Query: 782 EAARIRDEIKRLKS 795 AAR+RDE++ L++ Sbjct: 653 AAARVRDELQILRN 666 >gi|91788049|ref|YP_549001.1| excinuclease ABC subunit B [Polaromonas sp. JS666] gi|91697274|gb|ABE44103.1| Excinuclease ABC subunit B [Polaromonas sp. JS666] Length = 706 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/661 (55%), Positives = 480/661 (72%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AIAQL++G++ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 28 FELFMPYPPAGDQPTAIAQLVEGVNDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 88 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D I+V +VS IYGIG+ E Y+QM + GD + Q+++++ L++ QY R Sbjct: 148 SATKSVLERRDTIIVGTVSAIYGIGAPEDYTQMRFIARTGDKMGQRDVIARLIRMQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD I+IFP+ ++A R+ +F ++IE + F PLTG+ + V +Y Sbjct: 208 EQDFARGTFRVRGDVIDIFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKVPRFVVY 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A++ IK EL R+ + +G+L+EAQR+EQR +DLEML G C+ Sbjct: 268 PKSHYVTPRDKVMAAVETIKLELSERVGQFVADGKLVEAQRIEQRTRFDLEMLSEIGHCK 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PG P TL +Y+P+D+++F+DESHV I Q++ MY GD RK TL EY Sbjct: 328 GIENYTRHLSGSAPGSAPSTLCDYLPKDAVMFLDESHVMIGQLNAMYNGDRARKTTLVEY 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I VSATP ++E E G +VEQ++RPTGLVDP VE Sbjct: 388 GFRLPSALDNRPLKFDEFEAKMRQAIFVSATPAAYEQEHA-GQVVEQVVRPTGLVDPQVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + + R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+E Sbjct: 447 VRPATHQVDDVLQEIRIRVDRNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDTVE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVEILRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ A+DET RRR KQ+ N +H I P+S+ ++I ++ID + E Sbjct: 567 NLNGRAILYADRITDSMKKAMDETERRRNKQIAFNLEHGITPRSIVKRIKDLIDGVYSEK 626 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 + ++ Q+ +S+K +K L KQM A NL FE+AARIRD++ LK Sbjct: 627 SGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQMVEHARNLEFEKAARIRDQLHTLKEQA 686 Query: 798 Y 798 + Sbjct: 687 F 687 >gi|307130551|ref|YP_003882567.1| excinulease of nucleotide excision repair, DNA damage recognition component [Dickeya dadantii 3937] gi|306528080|gb|ADM98010.1| excinulease of nucleotide excision repair, DNA damage recognition component [Dickeya dadantii 3937] Length = 670 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/659 (56%), Positives = 475/659 (72%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSDFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ED+A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFSRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR T+DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLAGNKLLEEQRLAQRTTFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P I VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQAIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPELE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S++ A++ET RRREKQ +N++H I PQ + +KI +++ + Sbjct: 545 NLNGKAILYADKITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQSAN 604 Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + LS K ++ L QM A NL FEEAAR+RDEI L+ Sbjct: 605 GRGKGRGKKAAEPAAHYQQLSPKALDQKIRELESQMLAHAQNLEFEEAARLRDEIHALR 663 >gi|297538628|ref|YP_003674397.1| excinuclease ABC subunit B [Methylotenera sp. 301] gi|297257975|gb|ADI29820.1| excinuclease ABC, B subunit [Methylotenera sp. 301] Length = 682 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/661 (55%), Positives = 477/661 (72%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ + P+GDQP AI +L +GI K Q LLGVTGSGKT+TMA VI RPAIVMA Sbjct: 14 YQLNQPFPPAGDQPQAIDKLTQGIDDGLKFQTLLGVTGSGKTYTMANVIARTGRPAIVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP+N+VEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 74 PNKTLAAQLYSEFREFFPNNSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYGIG Y M++ L+ G+ + Q+++++ LV QY R Sbjct: 134 SATKALLEREDSIIVATVSAIYGIGDPTDYHGMVLHLQQGEKIPQRDMIARLVGMQYDRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD I++FP+ + A +SMF ++IE I+ F PLTGQ + +Y Sbjct: 194 EFDFSRGTFRVRGDVIDVFPAENNETAVHISMFDDEIESITLFDPLTGQIFNKIPRYTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T AM+ IK ELK R+ K G+L+EA R+EQR +DLEML G C+ Sbjct: 254 PSSHYVTPRETTIRAMEKIKHELKDRVDFYIKTGKLVEAARIEQRTRFDLEMLNEIGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G NPG+PPPTL +Y+P+++L+ +DESHVT+PQI MY+GD RK L +Y Sbjct: 314 GIENYSRHLSGGNPGDPPPTLIDYLPDNALMIIDESHVTVPQIGAMYKGDRSRKENLVDY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+RLPS +DNRPL+FEE+ + + VSATP +E Q +VE I RPTGLVDP + Sbjct: 374 GWRLPSALDNRPLKFEEFERIMRQCVFVSATPSEYEANHQQQ-VVEMIARPTGLVDPQIT 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A TQV+D+ EI L G R+L T LTKRM+EDLT+YL E ++VRY+HS++ T+E Sbjct: 433 VKPADTQVDDLLGEIKLRVAVGERVLATTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 493 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N +VI YA+ IT+S++ A+DET RRR QL N+ + I P+ + ++I ++ID + +D Sbjct: 553 NLNGQVIFYANKITRSMKAAMDETERRRGVQLAFNEANGIVPKGISKRIKDIIDGVYDKD 612 Query: 741 AATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 A + A SLS+K+ +K L K MH AA NL FE+AA RD++K+L+ Sbjct: 613 EAQRERKVLQDQANYESLSEKQIAKEMKRLEKAMHDAAKNLEFEKAADFRDQLKKLRVKF 672 Query: 798 Y 798 Y Sbjct: 673 Y 673 >gi|238799260|ref|ZP_04642706.1| UvrABC system protein B [Yersinia mollaretii ATCC 43969] gi|238716894|gb|EEQ08764.1| UvrABC system protein B [Yersinia mollaretii ATCC 43969] Length = 670 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/659 (55%), Positives = 471/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F +++E +S F PLTGQ V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDDEVERLSIFDPLTGQLQHEVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELADRRKVLLENNKLLEEQRIAQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ P TI VSATPG +ELE+ G I+EQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DP 735 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGITPQGLNKKIGDLLQLGQPST 604 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ LSL K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 605 RGKGKGRGGKVADPDNYLSLPPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 663 >gi|322417671|ref|YP_004196894.1| excinuclease ABC subunit B [Geobacter sp. M18] gi|320124058|gb|ADW11618.1| excinuclease ABC, B subunit [Geobacter sp. M18] Length = 662 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/661 (54%), Positives = 485/661 (73%), Gaps = 3/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T++ GDQP AI +L +G+ ++ Q+LLGVTGSGKTFTMA+VI RP +V+A Sbjct: 4 FELVTEFQARGDQPRAIDELSEGVLRGDRHQVLLGVTGSGKTFTMAQVIARCNRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+ RH Sbjct: 64 PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPASDTFIEKDSSINDEIDKFRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSLL R D ++V+SVSCIYGIGS ESY +M ++++ GD + + ELL LV+ QY R Sbjct: 124 AATRSLLTRRDVVIVASVSCIYGIGSPESYQEMQIRVREGDELGRDELLKRLVEIQYARN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++E+FP+H ++ A R+ +G+ +E IS+ PL G I+ + IY Sbjct: 184 DVDFHRGSFRVRGDTVEVFPAHDDERAIRIEFWGDTVEAISQIDPLRGVLIQRLPRFAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R TL A++ I+ EL+ RL + + LLEAQR+EQR +D+EMLE G CQ Sbjct: 244 PASHYVASRQTLERAVEQIRVELEERLRYFKSQNMLLEAQRIEQRTFFDIEMLEQMGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR GEPP TL +Y P+D +L VDESH+T+ Q+ GMYRGD RK TL Y Sbjct: 304 GIENYSRHFDGRQAGEPPYTLIDYFPDDFMLVVDESHITVSQVGGMYRGDRSRKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ VSATP +EL+ G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLTFQEFQKKLNQTVYVSATPADYELKMSSGVVVEQLIRPTGLIDPAIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ E L ++G R+L+T LTKRMAE+LT+Y E IRVRY+HS++ T + Sbjct: 424 VRPAAGQVDDLLHEARLTVERGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDIDTFQ 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMEILRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +V++YAD +T S+Q AIDET RRRE Q +N+++ I P+SVK I V+ +D Sbjct: 544 NISGRVLMYADKVTGSMQAAIDETLRRRELQEAYNRENGITPESVKRLIGNVLQSPEEKD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T + + A++ L+ K+ + +K L+K+M AA FE+AA +RD+I+RL+ + + Sbjct: 604 WVT--VPVRAEEF-LNPKELEKTVKRLKKEMLAAAKAQEFEKAAELRDKIRRLEVAEITK 660 Query: 801 G 801 G Sbjct: 661 G 661 >gi|237748603|ref|ZP_04579083.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13] gi|229379965|gb|EEO30056.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13] Length = 697 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/676 (53%), Positives = 485/676 (71%), Gaps = 8/676 (1%) Query: 130 SINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 S K +TF FQ+ + PSGDQP AI +L++GI Q LLGVTGSGKT+TM Sbjct: 8 SSKKEGKIVTFDNSPFQLYQPFSPSGDQPEAIDKLVEGIEDGLSFQTLLGVTGSGKTYTM 67 Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 A VI + RPAIV APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +I Sbjct: 68 ANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFI 127 Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 EK+S+INE I++MR S T+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ D + Sbjct: 128 EKDSAINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRERDRIPH 187 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 +++++ LV+ QY R DI RGTFRV GD+I++FP+ D A R+ MF ++IE + F P Sbjct: 188 RDVIARLVQMQYSRNDIDFSRGTFRVRGDTIDVFPAENADYALRIEMFDDEIESLHFFDP 247 Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 LTG+ ++ + IY SHYVTPR T+ A++ IK EL R + G+ +E QR+EQR Sbjct: 248 LTGKVLQKIPRFTIYPGSHYVTPRETVLRAIETIKAELIERKDWFRENGKYIEEQRIEQR 307 Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 +DLEM+ G + IENYSR+LTG PG+PPPTL +Y+P D+L+F+DESHV I Q++G Sbjct: 308 TRFDLEMMHELGFTKGIENYSRHLTGMKPGDPPPTLVDYLPSDALMFLDESHVMIGQLNG 367 Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MY GD RK L +YGFRLPS +DNRPLRF+E+ ++ VSATP ++EL G +V Sbjct: 368 MYNGDRSRKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQSVFVSATPANYELTHS-GQVV 426 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQ++RPTGLVDP ++++ A TQV+D+ EI+ ++ R+L+T LTKRMAE LT++L E Sbjct: 427 EQLVRPTGLVDPVIQVKPASTQVDDLLAEIHDRVEKSERVLVTTLTKRMAEQLTDFLSEN 486 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RVRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFL Sbjct: 487 GVRVRYLHSDIDTVERVEIVRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFL 546 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+ SLIQTIGRAARN+N ILYAD +T S++ AIDET RRR KQL +NK+HNI P+ + Sbjct: 547 RSERSLIQTIGRAARNLNGTAILYADKMTDSMKKAIDETERRRAKQLAYNKEHNITPEGI 606 Query: 726 KEKIMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 ++I ++ID + + + + AQ +S+K+ +K L KQM A NL FE+ Sbjct: 607 IKEIRDLIDGVFHPQDSLQELQVADDQAQYDVMSEKQLGKEIKKLEKQMQDYAKNLEFEK 666 Query: 783 AARIRDEIKRLKSSPY 798 AA+ RD++ L+ + Sbjct: 667 AAQTRDQLHLLRERAF 682 >gi|56414100|ref|YP_151175.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363022|ref|YP_002142659.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81821420|sp|Q5PG52|UVRB_SALPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238689931|sp|B5BC27|UVRB_SALPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56128357|gb|AAV77863.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094499|emb|CAR60018.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 673 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ +L ++ K + + L QM A NL FEEAA+ Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|222110830|ref|YP_002553094.1| excinuclease ABC subunit b [Acidovorax ebreus TPSY] gi|221730274|gb|ACM33094.1| excinuclease ABC, B subunit [Acidovorax ebreus TPSY] Length = 698 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/660 (54%), Positives = 480/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AIA+L++G+ E Q LLGVTGSGKTFTMA VI + RPAI+ A Sbjct: 25 FSLYQPYPPAGDQPEAIAKLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIIFA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 85 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SLLER D ++V++VS IYGIG ESY +MI+ L++GD + Q++ ++ L++ QY+R Sbjct: 145 SCTKSLLERRDVVIVATVSAIYGIGEPESYHRMIMTLRVGDQLSQRDAIAQLIRMQYQRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG FRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ + + +Y Sbjct: 205 EQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRIQQKIPRFTVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK+EL RL EG+L+EAQRLEQR +DLEML G C+ Sbjct: 265 PSSHYVTPRDKVLAAVETIKQELDERLKFFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PGEPP TL +Y+P D+L+F+DESH I Q++ MY GD RK TL EY Sbjct: 325 GIENYTRHLSGSAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRARKTTLVEY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E E G +V+Q++RPTGLVDP VE Sbjct: 385 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQVVDQVVRPTGLVDPEVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + Q+ R+L+T LTKRMAE LT+YL + ++VRY+HS++ T+E Sbjct: 444 VRPATHQVDDVLQEIRICTQKNQRVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD IT S++ AI ET RRR KQ+ +N+ I P+S+ +++ ++ID + E Sbjct: 564 NLHGKAILYADRITDSMRKAISETERRRAKQIAYNEARGITPRSIVKQVRDLIDGVYSEK 623 Query: 741 AAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + A+ +S+K +K L K M A NL FE+AAR+RD++ RLK Sbjct: 624 AGQEAQRLREDAARQAELEEMSEKDIAREIKRLEKLMLEHARNLEFEQAARVRDQLTRLK 683 >gi|114563341|ref|YP_750854.1| excinuclease ABC subunit B [Shewanella frigidimarina NCIMB 400] gi|114334634|gb|ABI72016.1| Excinuclease ABC subunit B [Shewanella frigidimarina NCIMB 400] Length = 673 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/669 (54%), Positives = 480/669 (71%), Gaps = 19/669 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F +++ + P+GDQP AI +L+ G+ S Q LLGVTGSGKT+T+A VI+ M RP I+ Sbjct: 4 SVFSLESKFEPAGDQPTAIKKLVDGLESGVASQTLLGVTGSGKTYTIANVIKQMGRPTII 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++M Sbjct: 64 MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD + Q+++L L + QYK Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILIRLSELQYK 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI + RGT+RV G+ I+IFP+ E A R+ +F ++IE +SEF PLTGQ + + Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPAESEREAIRIELFDDEIERLSEFDPLTGQINKRIARAT 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +HYVTPR + A + IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G Sbjct: 244 IYPKTHYVTPREKILAATEEIKEELRERRQYLLDNNKLIEAQRITERVQYDIEMMVELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRYL+GR+ G+ PPTL +Y+P D LL +DESHVT+PQI MY+GD RK L Sbjct: 304 CSGIENYSRYLSGRSSGDGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL FEE+ L P TI VSATP +ELE+ G I EQ++RPTGL+DP Sbjct: 364 EYGFRLPSALDNRPLMFEEFERLMPQTIFVSATPSLYELEKSTGEIAEQVVRPTGLLDPV 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R QV+D+ EI+ R+L+T LTKRM+EDL+EYL E ++VRY+HS++ T Sbjct: 424 LEVRPVGIQVDDLLSEIHKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+EIIRDLRLG+FDVL+GINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRA Sbjct: 484 VERVEIIRDLRLGRFDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN KVILYAD IT S+ A+ ET RRREKQ +HN K I P+ V + I +V+ Sbjct: 544 ARNVNGKVILYADRITNSMAKAMGETERRREKQHQHNLKLGIVPRGVVKSITDVM----- 598 Query: 739 EDAATTNISIDAQQ-----LSLSKKKGK--------AHLKSLRKQMHLAADNLNFEEAAR 785 D TN S ++ +++++ K + L KQMH A NL FE+AA Sbjct: 599 -DVGDTNFSKGTRKNHSKFAEVAEERAKYTSIADLSHQIDKLEKQMHEHAKNLEFEQAAA 657 Query: 786 IRDEIKRLK 794 +RD++K L+ Sbjct: 658 VRDDVKHLR 666 >gi|16759723|ref|NP_455340.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142504|ref|NP_805846.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052115|ref|ZP_03344993.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213616344|ref|ZP_03372170.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647606|ref|ZP_03377659.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850300|ref|ZP_03381198.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825272|ref|ZP_06544551.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20532283|sp|Q8Z889|UVRB_SALTI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|25300651|pir||AD0597 excision nuclease ABC chain B STY0831 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502016|emb|CAD05246.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi] gi|29138135|gb|AAO69706.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 673 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/669 (56%), Positives = 478/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ +L ++ K + + L +QM A NL FEEAA+ Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQ 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|294789333|ref|ZP_06754571.1| excinuclease ABC subunit B [Simonsiella muelleri ATCC 29453] gi|294482758|gb|EFG30447.1| excinuclease ABC subunit B [Simonsiella muelleri ATCC 29453] Length = 686 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/674 (53%), Positives = 484/674 (71%), Gaps = 16/674 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAITGLLEGLSDGLSSQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP N+VEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENSVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QMI+ +K GD++ Q++++S+LV QY+R Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMILSVKEGDTINQRDIISTLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD ++++P+ DVA R+ +F ++IE + F PL+G + + ++ Sbjct: 191 DLDFKRGSFRVRGDVVDVYPAESSDVALRIHLFDDEIERLDLFDPLSGSLHQRIGRFTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A + IK+EL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PGSHYVTPRDTVLRACESIKQELRERIDFYTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P++++LFVDESHVTI QI MY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPKNAILFVDESHVTIGQIGAMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ + P TI VSATP ++E E G IVEQ++RPTGL+DP +E Sbjct: 371 GFRLPSARDNRPLKFEEFERVMPQTIFVSATPAAYEAEHA-GQIVEQVVRPTGLLDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR +QV+D+ EIN+ ++G R+L+T LTKRMAE LT+Y E ++VRY+HS++ T+E Sbjct: 430 IRPVSSQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N+++ I P+ + +K+ ++ID + + Sbjct: 550 NVNGVAILYADKITDSMKSAIDETERRREKQIKFNEENGIIPKQINKKVKDLIDGVYGAE 609 Query: 741 AATTNISIDAQQLSLSKKKGK---------------AHLKSLRKQMHLAADNLNFEEAAR 785 + T +S ++ +KK+ K + L K+M AA NL FEEAA Sbjct: 610 SEETEVSGSLKKARANKKELKKSAYQAQIHNEEDAIKEIARLEKEMQTAARNLQFEEAAV 669 Query: 786 IRDEIKRLKSSPYF 799 IRD+I+ +K + F Sbjct: 670 IRDKIRNIKENLLF 683 >gi|237730756|ref|ZP_04561237.1| excinuclease ABC subunit B [Citrobacter sp. 30_2] gi|226906295|gb|EEH92213.1| excinuclease ABC subunit B [Citrobacter sp. 30_2] Length = 673 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/669 (56%), Positives = 475/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ Sbjct: 545 NINGKAILYGDKITASMAKAIGETERRREKQQLYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISI---------------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ + +L ++ K + + L QM A NL FEEAA Sbjct: 598 ALGQNIAKTKAKGKGKSRAGAKSEVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAT 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|303257494|ref|ZP_07343506.1| excinuclease ABC subunit B [Burkholderiales bacterium 1_1_47] gi|331000242|ref|ZP_08323926.1| excinuclease ABC, B subunit [Parasutterella excrementihominis YIT 11859] gi|302859464|gb|EFL82543.1| excinuclease ABC subunit B [Burkholderiales bacterium 1_1_47] gi|329572408|gb|EGG54061.1| excinuclease ABC, B subunit [Parasutterella excrementihominis YIT 11859] Length = 684 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/660 (55%), Positives = 479/660 (72%), Gaps = 3/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + +GDQP AI +L++GI Q LLGVTGSGKT+TMA VI P ++MA Sbjct: 11 FELHQPFEAAGDQPQAIKELVEGIEDGLTAQTLLGVTGSGKTYTMANVIARTGLPTLIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E ++FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 71 PNKTLAAQLYAEMRDFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA++S+LER D I+V++VS IYGIG ESY++M + LK+GD +EQ++L+S LV+ QY+R Sbjct: 131 SASKSVLERRDVIIVATVSAIYGIGKPESYTEMRLILKVGDKIEQRDLISHLVRIQYERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I++FP+ ++A R+ +F ++IE + F PLTG+ + V+ IY Sbjct: 191 DMEFTRGKFRVRGDTIDVFPAEHSEMALRIELFDDEIEAMYFFDPLTGKTRQKVDRFAIY 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S+YVTPR + A++ IK+EL+ + + + G+LLEAQR+ +R +DLEML G C+ Sbjct: 251 PTSNYVTPRNDILRAIEAIKDELRDQETKFIESGKLLEAQRIRERTLFDLEMLHEVGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PGEPPPTL +Y+P+D+L+F DESHV + QI GMYRGD RK TL Y Sbjct: 311 GIENYSRHLAGGLPGEPPPTLIDYLPKDALMFFDESHVLLGQIGGMYRGDSARKETLVTY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRF+E+ I VSATP +EL IVEQ++RPTGLVDP VE Sbjct: 371 GFRLPSAKDNRPLRFDEFESKMRRAIFVSATPADYELNHSSQ-IVEQVVRPTGLVDPEVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+DV EI +G RIL+T LTKRMAEDLT++L + I+VRY+HS++ T+E Sbjct: 430 VRPATTQVDDVLGEIKERIPKGQRILITTLTKRMAEDLTDFLQDNGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G FDVL+GINLLREGLDIPE L+AILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RVEIIRDLRAGVFDVLIGINLLREGLDIPEVALIAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV K ILYADTIT S++ A+DET RRREKQ +N HNI P+SVK++I ++ID + D Sbjct: 550 NVEGKAILYADTITDSMRRAMDETARRREKQTAYNVAHNITPKSVKKEIRDIIDGVYKSD 609 Query: 741 AATTNIS-IDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 +D Q + K+ +K L +M A NL FE+A+ +RD++ ++ + Sbjct: 610 NLENEFGLVDGQDYEKMGPKELAREIKRLENEMFEHAKNLEFEKASEVRDKLASIRKQVF 669 >gi|50121744|ref|YP_050911.1| excinuclease ABC subunit B [Pectobacterium atrosepticum SCRI1043] gi|81827077|sp|Q6D3C4|UVRB_ERWCT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|49612270|emb|CAG75720.1| excision nuclease ABC subunit B [Pectobacterium atrosepticum SCRI1043] Length = 670 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/663 (55%), Positives = 472/663 (71%), Gaps = 11/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATP +ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPSHYELEKSGGDVIDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVGTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLQEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILY D IT S+ AI ET RRREKQ +N +H I PQ + +KI +++ L Sbjct: 545 NLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQ---LGQ 601 Query: 741 AATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 +A ++ + ++ K + ++ L +M A NL FEEAA +RDE++ Sbjct: 602 SANKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQV 661 Query: 793 LKS 795 L++ Sbjct: 662 LRA 664 >gi|15616157|ref|NP_244462.1| excinuclease ABC subunit B [Bacillus halodurans C-125] gi|14195309|sp|Q9K6X9|UVRB_BACHD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|10176219|dbj|BAB07314.1| excinuclease ABC (subunit B) [Bacillus halodurans C-125] Length = 660 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/655 (56%), Positives = 473/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ GI+ +K Q LLG TG+GKTFTM+ VI+ + +P +V+A Sbjct: 5 FELVSQYKPQGDQPNAIRQLVAGINEGKKHQTLLGATGTGKTFTMSNVIQQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND I+V+SVSCIYG+GS E Y +++ L+ G +E+ +LL LV QY R Sbjct: 125 SATSALFERNDVIIVASVSCIYGLGSPEEYKELVCSLRTGMEIERNDLLRQLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ++ RV FG++I+ I+E LTG+ + I+ Sbjct: 185 DVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRITEVDALTGEIKGERNHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A K I+ EL+ RL EL G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKLKRATKSIEAELEERLKELHDRGKLLEAQRLEQRTRYDLEMIHEMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R GE P TL ++ P+D L+ +DESHVTIPQI MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRKAGETPYTLLDFFPDDFLIIIDESHVTIPQIRAMYNGDQARKGVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEHKVHQAVFVSATPGPYELEHTPE-MVEQIIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+L+T LTK+MAEDLT+YL E I+VRY+HSEVKTLE Sbjct: 424 VRPIEGQIDDLIGEINERVAKNERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR LRLG F+VLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 484 RIEIIRQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +TKS+Q+AIDET RRR Q E+N+KH I P++++++I +VI + Sbjct: 544 NANGYVIMYADRMTKSMQIAIDETKRRRSIQEEYNRKHGITPKTIEKRIPDVIKATAMVA 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A + +SKK+ +A ++ + +M AA LNFE AA +RD I LK+ Sbjct: 604 EDGEEYTSHAPKQKMSKKEREAVIERMEAEMKEAAKTLNFERAAELRDLILELKA 658 >gi|323705119|ref|ZP_08116695.1| excinuclease ABC, B subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535545|gb|EGB25320.1| excinuclease ABC, B subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 661 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 486/655 (74%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L +G++ K Q LLGVTGSGKT+TMA +I+ + +P +V+A Sbjct: 4 FKLVSDYKPTGDQPEAIRKLTEGVNIGLKCQTLLGVTGSGKTYTMANIIKNVNKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y ++++ L+ G ++ E+L LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYEELMLSLRPGMIKDRDEILKKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RG FRV GD IE+FP+ D A R+ +FG++I+ I+E LTG+ I + I+ Sbjct: 184 DINFVRGKFRVRGDVIEVFPASSSDKAIRIELFGDEIDRITEIDVLTGEIIGERSHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A++ I++EL+ R EL+ +G++LEA+RL+QR YD+EML+ G C Sbjct: 244 PASHYATSKEKLKKAIESIEKELEERYKELKDQGKILEAERLKQRTNYDIEMLQEVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR G PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK +L ++ Sbjct: 304 GIENYSRHISGRAAGSPPYTLLDYFPDDFLMFIDESHVTIPQIRGMYNGDRARKESLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATPG +ELE + +VEQIIRPTGL+DP V Sbjct: 364 GFRLPSAFDNRPLKFEEFEERINQLICVSATPGPYELEHSER-VVEQIIRPTGLLDPEVV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + QV+D+ EI + ++G R+L+T LTK+MAEDLT+Y + ++V+Y+HS+++T+E Sbjct: 423 VKPVKGQVDDLLSEIKMTVEKGYRVLVTTLTKKMAEDLTDYFRDMGVKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGKFDVLIGINLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N + KVI+YAD +T+S++ AI+ET RRR Q+E+NKKH I P+++ + I +VI+ + E Sbjct: 543 NADGKVIMYADIVTESMKNAINETNRRRAIQMEYNKKHGITPKTIVKGIRDVIEATKVAE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D T + + + K + + L K+M AA +L FE+AA++RD I L+ Sbjct: 603 DKGTYKVK---KAEVIDKVSIEKMISELEKEMKKAAKDLEFEKAAKLRDRIFELQ 654 >gi|160899435|ref|YP_001565017.1| excinuclease ABC subunit B [Delftia acidovorans SPH-1] gi|160365019|gb|ABX36632.1| excinuclease ABC, B subunit [Delftia acidovorans SPH-1] Length = 712 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/660 (54%), Positives = 485/660 (73%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQPAAI +L++GI E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 42 FELFQPYPPAGDQPAAIEKLVEGIQDGESFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 101 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP N+VEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 102 PNKTLAAQLYSEFREFFPKNSVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 161 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D ++V++VS IYGIG ESY +MI+ L+ GD + Q+++++ L++ QY+R Sbjct: 162 SCTKSLMERRDVVIVATVSAIYGIGEPESYHRMIMTLRTGDRINQRDVIAQLIRMQYQRN 221 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ +++ +Y Sbjct: 222 DQDFSRGKFRVRGDTIDVFPAEHSELAIRIELFDDEVESLQLFDPLTGRVRQSIPRFTVY 281 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL RL +L +G+L+EAQRLEQR +DLEML G C+ Sbjct: 282 PSSHYVTPRDKVLAAVETIKLELAERLKQLVGDGKLVEAQRLEQRTRFDLEMLTEVGHCK 341 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PGEPP TL +Y+P D+L+F+DESH I Q++ MY GD RK TL EY Sbjct: 342 GIENYTRHLSGAAPGEPPSTLTDYLPGDALMFLDESHQMIGQLNAMYSGDRSRKTTLVEY 401 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATP +E + G +V+Q++RPTGL+DP +E Sbjct: 402 GFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYE-KTHSGQVVDQVVRPTGLIDPEIE 460 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI L ++ R+L+T LTKRMAE LT+YL E ++VRY+HS+V+T+E Sbjct: 461 VRPATNQVDDVLQEIRLRVERTERVLITTLTKRMAEQLTDYLSENGVKVRYLHSDVETVE 520 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 521 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 580 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T+S++ AI ET RRR KQ+ N+++ I P+ + +++ ++ID + E Sbjct: 581 NLHGKAILYADRVTESMKKAIGETERRRAKQISFNEENGIEPKQIVKRVKDLIDGVYSEK 640 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + A QL +S+K +K L KQM A +L FE+AAR+RD++ LK Sbjct: 641 SGKEAERLQANQLERARVEDMSEKDVAKEIKRLEKQMLEHARSLEFEQAARVRDQLALLK 700 >gi|121609328|ref|YP_997135.1| excinuclease ABC subunit B [Verminephrobacter eiseniae EF01-2] gi|121553968|gb|ABM58117.1| excinuclease ABC, B subunit [Verminephrobacter eiseniae EF01-2] Length = 719 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/664 (54%), Positives = 487/664 (73%), Gaps = 7/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AIA+L++G++ E Q LLGVTGSGKTFTMA VI M RPAIV A Sbjct: 47 FALFQPYLPAGDQPEAIAKLVEGLNDGEVFQTLLGVTGSGKTFTMANVIARMGRPAIVFA 106 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 107 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 166 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D ++V++VS IYGIG ESY +M++ L+ GD + Q+++++ L++ QY+R Sbjct: 167 SCTKSLMERRDVVIVATVSAIYGIGEPESYHRMVMILRGGDKLGQRDVIAQLIRMQYQRN 226 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I++FP+ ++A R+ +F +++ + F PLTG+ + + +Y Sbjct: 227 DADFSRGKFRVRGETIDVFPAEHSELALRIELFDDEVASLQLFDPLTGRVKQKILRFTVY 286 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL RL +L+ G+LLEAQRLEQR +DLEML G C+ Sbjct: 287 PSSHYVTPRDKVLAAIESIKAELAERLQQLQALGKLLEAQRLEQRTRFDLEMLSEVGHCK 346 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PG+PP TL +Y+P+D+L+F+DESH I Q++ MY GD RK TL +Y Sbjct: 347 GIENYTRHLSGAAPGDPPSTLTDYLPKDALMFLDESHQMIGQLNAMYSGDRSRKTTLVDY 406 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATP +E G IV+Q++RPTGLVDP V+ Sbjct: 407 GFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYERIHS-GQIVDQVVRPTGLVDPEVQ 465 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + AQ+ R+L+T LTKRMAE LT+YL + ++VRY+HS++ T+E Sbjct: 466 VRPATHQVDDVLQEIRIHAQRHERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDIDTVE 525 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SL+QTIGRAAR Sbjct: 526 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLVQTIGRAAR 585 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD +T+S++ AI ET RRR +QL HN++H I P+S+ +++ ++ID + E Sbjct: 586 NINGRAILYADRMTESMKKAIGETERRRIRQLAHNQRHAITPRSIVKRVRDLIDGVYSEK 645 Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A ++ A+ +S+K +K L K+M A NL FE+AAR+RD++ LK Sbjct: 646 AGKVAERLEQEAMQRAKTQDMSEKDLAREIKRLEKRMLEHARNLEFEQAARMRDQLAGLK 705 Query: 795 SSPY 798 S + Sbjct: 706 SQVF 709 >gi|16764161|ref|NP_459776.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179366|ref|YP_215783.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614965|ref|YP_001588930.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550526|ref|ZP_02344283.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992027|ref|ZP_02573125.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168236724|ref|ZP_02661782.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168263705|ref|ZP_02685678.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466385|ref|ZP_02700247.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820061|ref|ZP_02832061.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445085|ref|YP_002040034.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194735904|ref|YP_002113891.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250972|ref|YP_002145754.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263555|ref|ZP_03163629.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242425|ref|YP_002214763.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390141|ref|ZP_03216752.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352057|ref|YP_002225858.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856236|ref|YP_002242887.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582612|ref|YP_002636410.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913358|ref|ZP_04657195.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20532285|sp|Q8ZQQ4|UVRB_SALTY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|81309740|sp|Q57RF9|UVRB_SALCH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189037997|sp|A9MTI2|UVRB_SALPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698337|sp|B5F076|UVRB_SALA4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698338|sp|B5FP65|UVRB_SALDC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698339|sp|B5QX69|UVRB_SALEP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698340|sp|B5R765|UVRB_SALG2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238693567|sp|B4SZK1|UVRB_SALNS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238693660|sp|B4TQU3|UVRB_SALSV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764908|sp|C0PWY7|UVRB_SALPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|16419304|gb|AAL19735.1| UvrB with UvrAC is a DNA excision repair enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62126999|gb|AAX64702.1| UvrB with UvrAC is a DNA excision repair enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364329|gb|ABX68097.1| hypothetical protein SPAB_02719 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403748|gb|ACF63970.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194711406|gb|ACF90627.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630935|gb|EDX49521.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214675|gb|ACH52072.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241810|gb|EDY24430.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290228|gb|EDY29585.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936941|gb|ACH74274.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602586|gb|EDZ01132.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271838|emb|CAR36672.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324631|gb|EDZ12470.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329601|gb|EDZ16365.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205343219|gb|EDZ29983.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347694|gb|EDZ34325.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708039|emb|CAR32329.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467139|gb|ACN44969.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246056|emb|CBG23858.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992538|gb|ACY87423.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157384|emb|CBW16873.1| excision nuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911821|dbj|BAJ35795.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085070|emb|CBY94857.1| UvrABC system protein B Protein uvrB; Excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226372|gb|EFX51423.1| Excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613853|gb|EFY10791.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620352|gb|EFY17219.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622778|gb|EFY19623.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628690|gb|EFY25477.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631628|gb|EFY28384.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637154|gb|EFY33857.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641646|gb|EFY38282.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322648027|gb|EFY44497.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648491|gb|EFY44943.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654228|gb|EFY50551.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658143|gb|EFY54410.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663617|gb|EFY59819.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670353|gb|EFY66493.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671589|gb|EFY67711.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676945|gb|EFY73012.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682870|gb|EFY78889.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686549|gb|EFY82531.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713837|gb|EFZ05408.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129106|gb|ADX16536.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194554|gb|EFZ79747.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199115|gb|EFZ84211.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202071|gb|EFZ87130.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208904|gb|EFZ93841.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213457|gb|EFZ98251.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215259|gb|EGA00005.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220821|gb|EGA05259.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227121|gb|EGA11299.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229937|gb|EGA14060.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233162|gb|EGA17258.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240897|gb|EGA24939.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243214|gb|EGA27234.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248753|gb|EGA32681.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251757|gb|EGA35624.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258751|gb|EGA42408.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260704|gb|EGA44309.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267860|gb|EGA51339.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268756|gb|EGA52216.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622518|gb|EGE28863.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627099|gb|EGE33442.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987729|gb|AEF06712.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 673 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ +L ++ K + + L QM A NL FEEAA+ Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|219670731|ref|YP_002461166.1| excinuclease ABC subunit B [Desulfitobacterium hafniense DCB-2] gi|219540991|gb|ACL22730.1| excinuclease ABC, B subunit [Desulfitobacterium hafniense DCB-2] Length = 683 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/656 (55%), Positives = 475/656 (72%), Gaps = 9/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y PSGDQP AI L++ IHS + Q LLGVTGSGKTFTMA +IE +QRP +++A Sbjct: 3 FRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+MRH Sbjct: 63 HNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS E Y ++V L+ G +++ ++L L+ QY R Sbjct: 123 SATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+ P+ + A R+ MFG++IE I E LTG+ + + I+ Sbjct: 183 DLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVSIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVT R + A + I++EL+ +L + E +LLEAQRLEQR YDLEML G C Sbjct: 243 PNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGFCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+LT R GE P TL + PED L+ +DESHVT+PQ+ GMY GD RK TL +Y Sbjct: 303 GVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P + +SATPG +ELE C IVEQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQ-IVEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+L+T LTK+MAEDLT+YL N+ V+Y+HS++ TLE Sbjct: 422 VRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMAVKYLHSDITTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R+LRLG DV+VGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 482 RVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N KVI+YAD +T+S+++AI ET RRR Q +N+KH I PQ++++KI E+ + + E Sbjct: 542 NAQGKVIMYADQMTRSMEVAIGETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVAE 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + A++L+ LKSL ++M LAA +++FE AA IRD + LK Sbjct: 602 KKAAYGSKMPAEELA-------ELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKG 650 >gi|269102202|ref|ZP_06154899.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae CIP 102761] gi|268162100|gb|EEZ40596.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae CIP 102761] Length = 675 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/666 (54%), Positives = 483/666 (72%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ PSGDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI +RP + +A Sbjct: 5 FSIASEFSPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTIANVIAEAKRPTLFLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D I+++SVS IYG+G +SY +M++ ++ GD ++Q+++L L + QY R Sbjct: 125 SATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLDQRDILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKI 379 D+ RGTFRV G+ I+IFP+ E A R+ +F ++++ IS F PLTG I+ ++ + Sbjct: 185 DMAFERGTFRVRGEVIDIFPAESEKEAVRIELFDDEVDRISLFDPLTGSVIQQDLPRYTV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL+ R + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREKILEAIEGIKVELESRRKQFMDGNKLVEEQRITQRTQFDVEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+ QI M+RGD RK L E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMFRGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+FEE+ L P TI VSATPG +E+E+ G I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLKFEEFESLAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLAEHGVRVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILY D IT S++ AI ET RRR+KQ +N++H I PQ + +K+ ++++ L Sbjct: 545 RNLEGKAILYGDKITGSMERAITETERRRDKQKLYNEQHGITPQKLNKKVADILE--LGS 602 Query: 740 DAATTNISIDAQQL-SLSKKKG----------KAHLKSLRKQMHLAADNLNFEEAARIRD 788 + A QL +++KKG + ++ L KQM+ A NL FE+AA +RD Sbjct: 603 SSPKAKAHNRAAQLHKVAEKKGTYSAMSPQQLEGEIQQLEKQMYDFAQNLEFEKAAELRD 662 Query: 789 EIKRLK 794 +I L+ Sbjct: 663 KIHTLR 668 >gi|241763771|ref|ZP_04761818.1| excinuclease ABC, B subunit [Acidovorax delafieldii 2AN] gi|241366990|gb|EER61386.1| excinuclease ABC, B subunit [Acidovorax delafieldii 2AN] Length = 696 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/671 (54%), Positives = 485/671 (72%), Gaps = 7/671 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI +L++G+ E Q LLGVTGSGKTFTMA VI M RPAIV A Sbjct: 24 FELFQPYPPAGDQPEAIDKLVEGLRDGETFQTLLGVTGSGKTFTMANVIARMGRPAIVFA 83 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 84 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 143 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D ++V++VS IYGIG ESY +M++ L++GD + Q+++++ L++ QY+R Sbjct: 144 SCTKSLMERRDVVIVATVSAIYGIGEPESYHRMVMTLRVGDQLGQRDVIAQLIRMQYQRN 203 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG FRV GD+I++FP+ ++A R+ +F ++IE + F PLTG+ + + +Y Sbjct: 204 EADFSRGKFRVRGDTIDVFPAEHSELAIRIELFDDEIESLQLFDPLTGRVKQKIPRFTVY 263 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL RL +L EG+L+EAQRLEQR +DLEML G C+ Sbjct: 264 PSSHYVTPRDKVLAAVETIKIELAERLQQLLAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 323 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PG+PP TL +Y+P+DS++F+DESH I Q+S MY GD RK TL EY Sbjct: 324 GIENYTRHLSGSAPGDPPSTLTDYMPKDSIMFLDESHQMIGQLSAMYNGDRARKTTLVEY 383 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATP +E G +V+Q++RPTGLVDP VE Sbjct: 384 GFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYEKTHA-GQVVDQVVRPTGLVDPVVE 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + ++ R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+E Sbjct: 443 VRPAMHQVDDVLQEIRIRVEKHERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDVDTVE 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 503 RVEIIRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N ILYAD IT+S++ A+ ET RRR KQ+ +N+ H I P+S+ +++ ++ID + E Sbjct: 563 NQNGHAILYADRITESMKKAMGETERRRLKQIAYNEAHGITPRSIVKRVRDLIDGVYSEK 622 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A ++ + L +S+K +K L K M A NL FE+AA++RD++ RLK Sbjct: 623 AGKDAERLEQEALQRAKVEDMSEKDVAREIKRLEKLMLEHARNLEFEQAAQVRDQLTRLK 682 Query: 795 SSPYFQGLDDS 805 + DS Sbjct: 683 DRAFGAHGSDS 693 >gi|89897604|ref|YP_521091.1| excinuclease ABC subunit B [Desulfitobacterium hafniense Y51] gi|89337052|dbj|BAE86647.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 686 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/656 (55%), Positives = 475/656 (72%), Gaps = 9/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y PSGDQP AI L++ IHS + Q LLGVTGSGKTFTMA +IE +QRP +++A Sbjct: 7 FRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLILA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+MRH Sbjct: 67 HNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKMRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS E Y ++V L+ G +++ ++L L+ QY R Sbjct: 127 SATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYDRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+ P+ + A R+ MFG++IE I E LTG+ + + I+ Sbjct: 187 DLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVSIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVT R + A + I++EL+ +L + E +LLEAQRLEQR YDLEML G C Sbjct: 247 PNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGFCN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+LT R GE P TL + PED L+ +DESHVT+PQ+ GMY GD RK TL +Y Sbjct: 307 GVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLVDY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P + +SATPG +ELE C IVEQIIRPTGL+DP + Sbjct: 367 GFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQ-IVEQIIRPTGLLDPEIS 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+L+T LTK+MAEDLT+YL N+ V+Y+HS++ TLE Sbjct: 426 VRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMSVKYLHSDITTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R+LRLG DV+VGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 486 RVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N KVI+YAD +T+S+++AI ET RRR Q +N+KH I PQ++++KI E+ + + E Sbjct: 546 NAQGKVIMYADQMTRSMEVAISETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVAE 605 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + A++L+ LKSL ++M LAA +++FE AA IRD + LK Sbjct: 606 KKAAYGSKMPAEELA-------ELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKG 654 >gi|262193339|ref|YP_003264548.1| excinuclease ABC subunit B [Haliangium ochraceum DSM 14365] gi|262076686|gb|ACY12655.1| excinuclease ABC, B subunit [Haliangium ochraceum DSM 14365] Length = 672 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/662 (56%), Positives = 484/662 (73%), Gaps = 6/662 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + + P+GDQP AI QL++G+ ++ Q+LLG+TGSGKTF++A VI RPA+++ Sbjct: 5 LFEIVSPFTPTGDQPEAIRQLIEGLGRGDRHQVLLGITGSGKTFSVANVIAETGRPALII 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNKILAAQLY EFK FP +AV YFVSYYDYYQPEAYVP TDTYIEK+S INE+IDRMR Sbjct: 65 APNKILAAQLYGEFKELFPKHAVHYFVSYYDYYQPEAYVPTTDTYIEKDSLINEEIDRMR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT +LL R D I+V+SVSCIYGIG+ E Y+ M ++ G V + ++L LV+ QY+R Sbjct: 125 HAATYALLSRQDVIIVASVSCIYGIGAREMYASMTCDIESGTEVARDDVLRRLVELQYER 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ RGTFRV GD +E+FP++ D A R+ +G+D+E ISE PL G+ R++ + I Sbjct: 185 NDVDFHRGTFRVRGDVVEVFPAYEADTAIRIEWWGDDVESISEIDPLRGKVKRSLGHVSI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SH+VTP L A++ I+ EL+ RL EL ++ +L+E QRLEQR YDLE LE G C Sbjct: 245 FPASHFVTPSDQLRRAIEGIRVELRERLEELSQQNKLVERQRLEQRTMYDLECLEQMGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR+ G PPPTL +Y PE+ +LF+DESH T+PQ+ MYRGD RK TL + Sbjct: 305 SGIENYSRHLTGRDSGLPPPTLIDYFPEEFILFIDESHQTVPQLQAMYRGDRSRKQTLVD 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRF+E+N I +SATP +ELEQ QG+IVEQIIRPTGL+DP + Sbjct: 365 FGFRLPSAIDNRPLRFDEFNERARQYIYISATPADYELEQSQGVIVEQIIRPTGLLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI L ++ R+L+T LTKRMAEDLTEY + +++VRY+HS+V TL Sbjct: 425 EVRPVGEQVDDLLSEIRLRIERRERVLVTTLTKRMAEDLTEYYADLDVKVRYLHSDVDTL 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEIIRDLR G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 485 ERIEIIRDLRRGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV----IDP 735 RNVN +V+LYAD ITKS++ AIDET RRR Q E+N+ H I P+S I+++ D Sbjct: 545 RNVNGRVLLYADRITKSMRDAIDETERRRALQGEYNQTHGIVPRSTTRAILDIQPTNADG 604 Query: 736 ILLEDAATTNISIDA-QQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L T + D +LS+ + + + ++ LR +M AA L+FE AA++RD + L Sbjct: 605 SLTRAPLTEAVPTDVLDELSVDNAAELRKAIEKLRGEMRAAAAELDFERAAKLRDRAREL 664 Query: 794 KS 795 +S Sbjct: 665 ES 666 >gi|204929975|ref|ZP_03220996.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320969|gb|EDZ06170.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 673 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/669 (56%), Positives = 476/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI +L ++ K + + L QM A NL FEEAA+ Sbjct: 598 ALGQNIVKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|299136465|ref|ZP_07029648.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX8] gi|298600980|gb|EFI57135.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX8] Length = 663 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/665 (54%), Positives = 482/665 (72%), Gaps = 12/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AI++++ G+++ +K Q+LLGVTGSGKTFTMAKVI+ + RPA+++A Sbjct: 3 FQLVSDYKPAGDQPRAISEIVSGLNAGDKDQVLLGVTGSGKTFTMAKVIQELNRPALILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P D YIEKES+IN+++D++R Sbjct: 63 HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPAGDLYIEKESTINDELDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D I+VSSVSCIYG+GS E+Y M++ L+ G ++++++ LV+ Y+R Sbjct: 123 SATRSLFERRDAIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKRQDITRRLVEILYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD IE++P++ E+ A+R+ +FG++I+ +S+ PL G + + IY Sbjct: 183 DVDFRRGTFRVRGDVIEVYPTYDEN-AFRIELFGDEIDSLSQIDPLFGTVKQKYSRLPIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV TA+ I EL +LEKEGRL+E+QR+ QR +DLEM+++ G C Sbjct: 242 PKSHYVVAPERKKTAIDNILSELADWEAQLEKEGRLVESQRIHQRTRFDLEMIKSVGFCH 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PGEPPPTL +Y P D L+F+DESHVT+PQ+ GM+ GD RK L +Y Sbjct: 302 GIENYSRHFSGRLPGEPPPTLLDYFPRDFLIFIDESHVTVPQLHGMWHGDRSRKQNLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRFEE+ + VSATPG +EL + G++VEQIIRPTGLVDP VE Sbjct: 362 GFRLPSAMDNRPLRFEEFETRTGQIVYVSATPGPYELTKSAGVVVEQIIRPTGLVDPQVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI A Q R+L+T LTKRMAEDL Y E +R RYMHSE++TLE Sbjct: 422 IRPVKGQIDDLLAEIRDRAAQNQRVLVTTLTKRMAEDLANYYTEVGVRCRYMHSEIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+++RDLR G++DVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 482 RIKLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILYAD +T S++ AIDET RRREKQ+ +N++H I PQ+V I + + +L D Sbjct: 542 HLEGRAILYADKMTDSMRRAIDETDRRREKQVAYNEEHGITPQTVIRSINDSLATVLKAD 601 Query: 741 AA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T + A Q L ++ L +M AA FE+AA++RD +K L+ Sbjct: 602 YADLTEEDATGMPDIATQAELD-----TYIAKLETEMREAAKKFEFEKAAKLRDTVKELR 656 Query: 795 SSPYF 799 + + Sbjct: 657 TKEFL 661 >gi|71065305|ref|YP_264032.1| excinuclease ABC subunit B [Psychrobacter arcticus 273-4] gi|71038290|gb|AAZ18598.1| Excinuclease ABC subunit B [Psychrobacter arcticus 273-4] Length = 703 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/667 (55%), Positives = 483/667 (72%), Gaps = 18/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M T++ P+GDQP AI +L+ GI+S QLLLGVTGSGKT+TMAKVI QRP I+MA Sbjct: 40 FEMVTEFEPAGDQPQAIKKLVNGINSGMDEQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK+S+IN+ ID+MR Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVSCIYG+G ESY +M++ + +GD +++ + LV+ QY R Sbjct: 160 SATRALLERRDAIIVASVSCIYGLGDPESYLKMLLHVVVGDKIDRTATIKRLVEMQYTRN 219 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT+R+ G+ ++I+P+ E +A RV +F N++E+I+ F PLTG+ +R V I IY Sbjct: 220 ELDFGRGTYRLRGELLDIYPAESEQLAVRVHLFDNEVEKITWFDPLTGKTVRTVPRITIY 279 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR L A I+ EL+ RL + +L+EAQRL++R YDLEM++ G C Sbjct: 280 PKSHYVTPRNKLEAASHTIRAELEPRLEYFRENNKLIEAQRLKERTQYDLEMIQQLGYCN 339 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS++L+GR GE PPTLF+YIPED+LLF+DESHVT+ QI MY+GD RK L Y Sbjct: 340 GIENYSQHLSGRPSGEAPPTLFDYIPEDALLFIDESHVTVSQIGAMYKGDRSRKENLVNY 399 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS M+NRP++FEEW ++P TI VSATP +ELE + +VEQ++RPTGL+DP +E Sbjct: 400 GFRLPSAMNNRPMKFEEWERIKPKTIYVSATPALYELEHSEQ-VVEQVVRPTGLIDPEIE 458 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EI ++ R+L+T LTKRM+EDLT YL E +++V Y+HS++ TLE Sbjct: 459 IRPVLTQVDDVLSEITKRREKDERVLITTLTKRMSEDLTSYLKEYDVKVAYLHSDIDTLE 518 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAI DADKEGFLRS+ +LIQTIGRAAR Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERALIQTIGRAAR 578 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N K ILYAD IT S+Q AIDET RRREKQ+ N +HNI P + I + ID D Sbjct: 579 HINGKAILYADRITNSMQKAIDETDRRREKQVAFNLEHNITPTGARRSITDKIDTGDDLD 638 Query: 741 A------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A +ISI L+K+ + L+ L KQM + +L FE+AA+ RD Sbjct: 639 ANDNQAIPVKSNLPDVDISILRSPDLLAKEINR--LEKLMKQM---SRDLKFEDAAKTRD 693 Query: 789 EIKRLKS 795 ++ LK+ Sbjct: 694 KVLELKA 700 >gi|168230684|ref|ZP_02655742.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471840|ref|ZP_03077824.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458204|gb|EDX47043.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334847|gb|EDZ21611.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 673 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597 Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 A NI+ +L ++ K + + L QM A NL FEEAA+ Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKGGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657 Query: 786 IRDEIKRLK 794 IRD++ +L+ Sbjct: 658 IRDQLHQLR 666 >gi|221066570|ref|ZP_03542675.1| excinuclease ABC, B subunit [Comamonas testosteroni KF-1] gi|220711593|gb|EED66961.1| excinuclease ABC, B subunit [Comamonas testosteroni KF-1] Length = 688 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/660 (54%), Positives = 481/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQPAAI +L++G++ E Q LLGVTGSGKTFTMA VI + +PAIV A Sbjct: 22 FELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIVFA 81 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 82 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 141 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+S++ER D ++V++VS IYGIG ESY +MI+ L+ GD++ Q++ ++ L++ QY+R Sbjct: 142 SCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQRN 201 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+I++FP+ ++A R+ +F +++E + F PLTG+ +++ IY Sbjct: 202 DQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQSIPRFTIY 261 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IKEEL RL +L G+L+EAQRLEQR +DLEML G C+ Sbjct: 262 PSSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGHCK 321 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+ PG+PP TL +Y+P DS++F+DESH I Q++ MY GD RK TL EY Sbjct: 322 GIENYTRHLSASRPGDPPSTLTDYLPRDSIMFLDESHQMIGQLNAMYNGDRARKTTLVEY 381 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATP +E G +VEQ++RPTGLVDP +E Sbjct: 382 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPEIE 440 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + R+L+T LTKRMAE LTEYL + ++VRY+HS+V T+E Sbjct: 441 VRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDTVE 500 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 501 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 560 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD IT+S++ AI ET RRREKQ+ N+ + I P+ + +++ ++ID + E Sbjct: 561 NVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYSEK 620 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + Q L +++K +K L KQM A NL FE+AAR+RD++ LK Sbjct: 621 SGKEAERLQEQALQQARVEDMTEKDIAREIKRLEKQMLEHARNLEFEQAARVRDQLSLLK 680 >gi|303327019|ref|ZP_07357461.1| excinuclease ABC subunit B [Desulfovibrio sp. 3_1_syn3] gi|302863007|gb|EFL85939.1| excinuclease ABC subunit B [Desulfovibrio sp. 3_1_syn3] Length = 679 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/671 (53%), Positives = 472/671 (70%), Gaps = 13/671 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K T F +QT Y P GDQP AI L I + Q+LLGVTGSGKTFTMA VI RP Sbjct: 4 KSTTPFSLQTGYTPMGDQPEAITALTDNIRAGVPAQVLLGVTGSGKTFTMANVIARCNRP 63 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 A+V+APNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I Sbjct: 64 ALVLAPNKTLAAQLYNEFRELFPRNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNI 123 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RH+AT +LL R D ++V+SVSCIYG+GS E Y++M++ +++G + +L++ LV+ Sbjct: 124 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYAKMVIPVEVGQRLPMDDLITRLVEV 183 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+R D RGTFRV GD++EI P++ + A R+ FG+DI+ + E PLTG+ + V Sbjct: 184 HYERNDYDFHRGTFRVRGDALEIIPAYHHERALRLEFFGDDIDAMREIDPLTGEVLAEVG 243 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +Y SH+V+ + L A I++EL RL ++ G+L+EAQRLEQR DLEM+E Sbjct: 244 KTVLYPASHFVSAQDNLKRAAGDIRDELTARLTYFKEHGKLVEAQRLEQRTQLDLEMIEE 303 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENY+R+L GR GEPP L Y P D LLFVDESH+TIPQ+ GM++GD RK Sbjct: 304 LGYCNGIENYTRHLDGRKTGEPPSCLLNYFPRDFLLFVDESHITIPQVGGMFKGDRSRKQ 363 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL EYGFRLPS +DNRPL+F+E+ L + VSATPG +E++Q QGI+ EQIIRPTGLV Sbjct: 364 TLVEYGFRLPSALDNRPLQFDEFTSLLNQVVYVSATPGRYEMDQAQGIVAEQIIRPTGLV 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VEIR + Q+ED+ E +G R+L+T LTKRMAEDLTEY ++ RY+HS+ Sbjct: 424 DPEVEIRPVKGQMEDLLSECRARVTRGERVLVTTLTKRMAEDLTEYCCNMGVKARYLHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++TLER++IIR LR+G+FDVLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQT Sbjct: 484 IETLERLQIIRALRMGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTF 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN +VILYAD +T S++ A+DET RRR KQ +N++H+I P+S + + +D Sbjct: 544 GRAARNAQGRVILYADKVTASMKAAMDETGRRRAKQTTYNEEHHITPRSTTKSLESPLDT 603 Query: 736 ILLEDAAT-----------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + +++ A N+ DA L+ + A + L K+M AA +L FE+AA Sbjct: 604 LYVDNDAAKGRGKGRGNGKANVKADAA--PLTAEDTAALVLKLEKEMRQAARDLEFEQAA 661 Query: 785 RIRDEIKRLKS 795 +RD I+ L++ Sbjct: 662 ELRDRIRALRA 672 >gi|212695826|ref|ZP_03303954.1| hypothetical protein ANHYDRO_00359 [Anaerococcus hydrogenalis DSM 7454] gi|212677151|gb|EEB36758.1| hypothetical protein ANHYDRO_00359 [Anaerococcus hydrogenalis DSM 7454] Length = 659 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/654 (55%), Positives = 479/654 (73%), Gaps = 6/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P GDQP AI +L GI + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 6 FVIKSDYTPKGDQPQAIKKLANGIKEGKHHQILQGVTGSGKTFTMANIIQEVQRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID++RH Sbjct: 66 HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E Y ++++ L+ G + +E++ L+++Q+ R Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYKKLVLSLRPGQEISPEEVMKELIERQFVRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR GD ++IFP+ ++ A R+ FG++I+ ISEF LTG+ I ++ IY Sbjct: 186 DFDFSRGTFRKRGDVLDIFPAGNDEKAIRIEFFGDEIDRISEFDSLTGKVISHISHGYIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ IKEELK RL ELE E +L+EAQRLEQR YD+EMLE G C Sbjct: 246 PASHYATTAEKAEAAIVTIKEELKERLAELEGENKLVEAQRLEQRTNYDIEMLEEIGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R PG P TL +Y P+D +LFVDESHV+IPQ+ GMY GD RK L +Y Sbjct: 306 GIENYSRHMSQREPGSRPATLIDYFPDDFVLFVDESHVSIPQVGGMYEGDRSRKQNLVDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L TI VSATPG +E+E+ G +VEQIIRPTGL+DP ++ Sbjct: 366 GFRLPSALDNRPLKFKEFEKLINQTIYVSATPGPYEMEKTGGEVVEQIIRPTGLLDPLID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ + I+ ++ R+L+T LTKRMAEDLT+YL E I+V+Y+HS++KT+E Sbjct: 426 VKPVENQIDDLIENIHQTIEKKERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S++ AIDET RRR+ Q E NKKH I P ++K+ I E+I + E Sbjct: 546 NSEGHVIMYADKITRSMKKAIDETERRRKIQTEFNKKHGITPTTIKKNISEIIQ--VTEK 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ S K+ L +L +M+ AA+ L+FE+AA +RD+I ++K Sbjct: 604 AENAS----EEKEEFSPKEIDNILINLETEMYAAAEELDFEKAASLRDQIAKMK 653 >gi|296103294|ref|YP_003613440.1| excinuclease ABC subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057753|gb|ADF62491.1| excinuclease ABC subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 671 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/662 (56%), Positives = 478/662 (72%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG ++ IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESVIQRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTNIS--------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A T ++ ++L+ K + + L QM A NL FEEAA+IRD++ + Sbjct: 603 IAKTKAKGRGKARSVVEEDTVALTPKALQQKIHELEAQMMQHAQNLEFEEAAQIRDQLHQ 662 Query: 793 LK 794 L+ Sbjct: 663 LR 664 >gi|296136304|ref|YP_003643546.1| excinuclease ABC, B subunit [Thiomonas intermedia K12] gi|295796426|gb|ADG31216.1| excinuclease ABC, B subunit [Thiomonas intermedia K12] Length = 697 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/668 (54%), Positives = 481/668 (72%), Gaps = 6/668 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AIAQL +G+ Q LLGVTGSGKT+T+A VI M RPAIV A Sbjct: 23 FRLYQPYPPAGDQPTAIAQLAEGLGDGLSYQTLLGVTGSGKTYTIANVIARMGRPAIVFA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 83 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V+SVS IYGIG+ Y MI+ ++ GD + Q+++++ LV+ QY+R Sbjct: 143 SATKSLLERRDVVIVASVSAIYGIGNPSDYHAMILTVRTGDRMGQRDVIAQLVRMQYQRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD I++FP+ ++A R+ +F ++IE +S F PLTG + + IY Sbjct: 203 EVDFTRGTFRVRGDRIDVFPAEHAELAVRIELFDDEIETLSLFDPLTGVVRQKIPRFTIY 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK+EL+ R EL G+L+EAQRLEQR +DLEML G C+ Sbjct: 263 PSSHYVTPREKVLEAVEGIKQELRERSKELTGMGKLVEAQRLEQRTRFDLEMLTEIGHCK 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+++F+DESHV I Q +GMY GD RK TL +Y Sbjct: 323 GIENYSRHLSGAAPGEPPPTLVDYLPPDAIMFLDESHVLIGQFNGMYNGDRARKQTLVDY 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ T+ VSATP +E + +VEQ++RPTGLVDP +E Sbjct: 383 GFRLPSALDNRPLKFAEFERKMRQTVFVSATPADYESQHADQ-VVEQVVRPTGLVDPLIE 441 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A +QV+DV EI L +G R+L+T LTKRMAE LT+YL E ++VRY+HS++ T+E Sbjct: 442 VRPASSQVDDVLGEIRLRVNKGERVLITTLTKRMAEQLTDYLDENGVKVRYLHSDIDTVE 501 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 502 RVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 561 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILY D IT S++ AIDET RRR KQ+ N +H I P ++ + + ++ID ++ Sbjct: 562 NVNGMAILYGDRITDSMRRAIDETERRRAKQIAFNTEHGITPTALNKSVRDLIDGVVQTP 621 Query: 741 AA---TTNISIDAQQLSLSKKKGKA-HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + +L + + A +K L K+M A NL FE+AAR+RD++ L+ Sbjct: 622 GKGLRAGSVEREIAELQIDNAQDVAREIKRLEKRMIEHARNLEFEQAARVRDQLGLLRQR 681 Query: 797 PYFQGLDD 804 F G DD Sbjct: 682 -VFGGGDD 688 >gi|238898698|ref|YP_002924379.1| excinulease of nucleotide excision repair, DNA damage recognition component [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259710328|sp|C4K6N8|UVRB_HAMD5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|229466457|gb|ACQ68231.1| excinulease of nucleotide excision repair, DNA damage recognition component [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 671 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/666 (54%), Positives = 479/666 (71%), Gaps = 20/666 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AI QL +G+ + Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FKLHSNFKPSGDQPEAIHQLKEGLKNGLMHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR Sbjct: 65 PNKTLAAQLYGEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L+ L + QY R Sbjct: 125 SATKALLERQDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILARLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G++I+IFP+ D A R+ +F +++E +S F PLTG + V +Y Sbjct: 185 DQVFQRGTFRVRGENIDIFPAESSDFAVRIELFDDEVERLSLFAPLTGHIQKTVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + +M+ IK EL R +L +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRARILQSMEEIKIELAQRREQLLANNKLVEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P + LL +DESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRAAGEPPPTLFDYLPSEGLLVIDESHVTIPQIGGMYKGDRSRKQTLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI +SATPG +EL + G ++EQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFESLAPQTIYISATPGPYELGKSAGELIEQVVRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E+ RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRVVIDERVLVTTLTKRMAEDLTEYLAEQGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N+N K ILY D IT S++ AIDET RRR+KQ +NK+ I P+ +++KI ++++ Sbjct: 545 NLNGKAILYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELGQSYT 604 Query: 735 -------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 LE+ +T +LS K K + L ++MH A N+ FE+A ++R Sbjct: 605 KGKARKRTTTLEENSTNYT-------ALSPKAIKKKIDELEQKMHDHAQNMEFEKAGQLR 657 Query: 788 DEIKRL 793 DEI++L Sbjct: 658 DEIQQL 663 >gi|161504034|ref|YP_001571146.1| excinuclease ABC subunit B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189037996|sp|A9MJE1|UVRB_SALAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|160865381|gb|ABX22004.1| hypothetical protein SARI_02127 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 673 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/666 (56%), Positives = 476/666 (71%), Gaps = 16/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVEATVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 Query: 734 -----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A T I +L ++ K + + L QM A NL FEEAA+IRD Sbjct: 605 KTKAKGKGKGRSTAKTGIV----ELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRD 660 Query: 789 EIKRLK 794 ++ +L+ Sbjct: 661 QLHQLR 666 >gi|171463235|ref|YP_001797348.1| excinuclease ABC, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192773|gb|ACB43734.1| excinuclease ABC, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 718 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/688 (53%), Positives = 485/688 (70%), Gaps = 9/688 (1%) Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173 +PL + G P + + + + +Q+ + P+GDQP AI L++GI Q L Sbjct: 28 DPLGEAGHDLDPAKFITFPD-----SLYQLYQPFAPAGDQPQAIDALVEGIEDGLTFQTL 82 Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 LGVTGSGKTFTMA VI RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQ Sbjct: 83 LGVTGSGKTFTMANVIARTGRPAIIFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQ 142 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 PEAYVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+ Y M Sbjct: 143 PEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPGDYHSM 202 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 ++ L+ GD + Q+++L L+ QY R + RG FRV GD+I+IFP+ ++A RV +F Sbjct: 203 VMTLRPGDKMSQRDILMRLIAMQYDRNETDFKRGVFRVRGDTIDIFPAEHNELAVRVELF 262 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 + IE + F PLTG+ + + +Y +SHYVTPR T+ A++ IK EL+ RL E K+ Sbjct: 263 DDVIESLQFFDPLTGKIRQKIPQFTVYPSSHYVTPRDTVLKAIETIKTELRTRLDEFVKD 322 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 G+L+EAQRLEQR +DLEML G C+ IENYSR+L+G PGE PPTL +Y+P D+++F+ Sbjct: 323 GKLVEAQRLEQRTRFDLEMLNELGFCKGIENYSRHLSGAAPGEAPPTLVDYLPNDAVMFL 382 Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533 DESHV I Q++ MY GD RK TL E+GFRLPS MDNRPL+F E+ TI VSATP Sbjct: 383 DESHVLIGQLNAMYNGDKSRKHTLVEFGFRLPSAMDNRPLKFAEFETKMRQTIFVSATPA 442 Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593 +E QG +VEQ+ RPTGLVDP +E+ A TQV+D+ D+I+ + G R+L+TVLTKR Sbjct: 443 DYEGTH-QGQVVEQVARPTGLVDPEIEVLPASTQVDDLLDQIHARVKVGERVLVTVLTKR 501 Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAE LT+YL + ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE L Sbjct: 502 MAEQLTDYLSDNGVKVRYVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSL 561 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 VAILDADKEGFLRS+ SLIQTIGRAARNV K ILYAD IT S++ A+ ET RRR KQ+ Sbjct: 562 VAILDADKEGFLRSERSLIQTIGRAARNVRGKAILYADRITDSMKRAMGETERRRTKQIA 621 Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQ 770 NK H I P+ V+++I ++ID + + I+ A+ + +K A +K L KQ Sbjct: 622 FNKLHGIEPKGVQKRIKDIIDGVYDVKEKRQEMQIEQERARYEDMGEKDLVAEIKRLEKQ 681 Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPY 798 M+ A NL FE+AA RD + ++K + Sbjct: 682 MNAEAKNLEFEKAAGTRDRLTKVKEMAF 709 >gi|261401276|ref|ZP_05987401.1| excinuclease ABC subunit B [Neisseria lactamica ATCC 23970] gi|269208761|gb|EEZ75216.1| excinuclease ABC subunit B [Neisseria lactamica ATCC 23970] Length = 675 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/667 (54%), Positives = 482/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIARSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFTREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVVTQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K S F Sbjct: 666 IKESMLF 672 >gi|284097822|ref|ZP_06385805.1| UvrABC system protein B [Candidatus Poribacteria sp. WGA-A3] gi|283830664|gb|EFC34791.1| UvrABC system protein B [Candidatus Poribacteria sp. WGA-A3] Length = 668 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/661 (52%), Positives = 479/661 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++++ P GDQ AI L +G+H+ ++ Q+LLGVTGSGKTFTMA VI +Q+P +V+ Sbjct: 4 FQLESEFSPKGDQQQAIDALTEGVHAGKQHQVLLGVTGSGKTFTMANVIAKIQKPTLVVV 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY+P TDTYI K++SIN+ ID+MRH Sbjct: 64 HNKTLAAQLYQEFKSFFPQNAVEYFVSYYDYYQPEAYIPSTDTYIAKDASINDTIDQMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LLER+D ++V+SVSCIYG+GS E Y M++ L+ G ++ ++ +L+ LV QY R Sbjct: 124 AATSALLERDDILIVASVSCIYGLGSPEVYHGMLLYLEEGMTIRREAILAKLVDIQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGTFR GD IEIFP+ + RV +FG+ +E I+E PLTG+ + + + IY Sbjct: 184 DVELQRGTFRARGDVIEIFPAASDSNTVRVELFGDVVESIAEIDPLTGRSLGRLSKVPIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+EEL RL+ + +LLEAQR+EQR +DLEM+ G C Sbjct: 244 PKSHYVIAPDRYDRALQGIEEELDERLVYFRRHNQLLEAQRVEQRTRFDLEMIRAMGYCH 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTL +Y P+D LL VDESHVT+PQ GMY GD RK TL EY Sbjct: 304 GIENYSRHLSGRAPGEPPPTLLDYFPKDYLLIVDESHVTVPQFGGMYEGDHSRKKTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+F+E+ + + VSATPG +EL +VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSAMDNRPLKFQEFERVMNRVMYVSATPGPYELRHAGESVVEQIIRPTGLMDPVLE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A+ QV+D+ E+ + +G R+L+T LTKRMAEDLTEY ++ ++VRY+HS+++TLE Sbjct: 424 VKPAKGQVDDLLQEVKASIARGFRVLVTTLTKRMAEDLTEYYHDLGLKVRYLHSDIQTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LV +LDADKEGFLR +LIQT GRAAR Sbjct: 484 RAEIIRDLRRGVFDVLVGINLLREGLDLPEVALVGVLDADKEGFLRGHRALIQTAGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVILY DTIT S+++ I+ET+RRR+ Q ++N+++ I P+++K++I ++ + D Sbjct: 544 NSEGKVILYGDTITDSMKVTIEETSRRRQIQADYNRRNGITPETIKKRIHDLDYHVAEAD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 +I+ + + + ++ + + +L ++M AA L FE AA++RD I+ L+ Sbjct: 604 YVDVSIAAEEEAVYTTEADVEKTVAALEQEMKAAAKMLEFERAAKLRDRIRALRQQELLF 663 Query: 801 G 801 G Sbjct: 664 G 664 >gi|271501009|ref|YP_003334034.1| excinuclease ABC subunit B [Dickeya dadantii Ech586] gi|270344564|gb|ACZ77329.1| excinuclease ABC, B subunit [Dickeya dadantii Ech586] Length = 670 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/664 (56%), Positives = 476/664 (71%), Gaps = 15/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSAFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFSRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR T+DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G I++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPVLE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S++ AI+ET RRREKQ +N++H I PQ + +KI ++ L+ Sbjct: 545 NLNGKAILYADRITPSMERAINETQRRREKQQAYNEQHGIVPQGLNKKIGDI-----LQI 599 Query: 741 AATTNISID----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + N A+ LS K ++ L QM A NL FEEAAR+RDEI Sbjct: 600 GQSVNGKGKGRGKKAAEPAARYQQLSPKALDQKIRELESQMLTHAQNLEFEEAARLRDEI 659 Query: 791 KRLK 794 L+ Sbjct: 660 HALR 663 >gi|157375183|ref|YP_001473783.1| excinuclease ABC subunit B [Shewanella sediminis HAW-EB3] gi|157317557|gb|ABV36655.1| excinuclease ABC, B subunit [Shewanella sediminis HAW-EB3] Length = 675 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/664 (53%), Positives = 480/664 (72%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ Y P+GDQP AI +L+ GI S Q LLGVTGSGKTFT+A VI+ + RP I+MA Sbjct: 11 FQLESQYSPAGDQPKAIEKLVDGIESGVACQTLLGVTGSGKTFTIANVIKQLARPTIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N I++MR Sbjct: 71 PNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD ++Q+++L L + QY R Sbjct: 131 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDFMDQRDILKRLSELQYTRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGT+RV G+ I+IFP+ + A RV +F +IE +S F PLTG + + IY Sbjct: 191 DIELKRGTYRVRGEVIDIFPADSDKEAIRVELFDVEIERLSLFDPLTGHISKRIARTTIY 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A + IKEEL++R +L +L+EAQR+ +R+ YD+EM+ G C Sbjct: 251 PKSHYVTPREKILAATEEIKEELRIRKKQLLDNNKLIEAQRINERVQYDIEMMTELGYCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G+ PPTL +Y+P+D LL +DESHVT+PQI MY+GD RK+ L EY Sbjct: 311 GIENYSRYLSGRAEGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKSNLVEY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATP +E+++ G + +Q+IRPTGL+DP +E Sbjct: 371 GFRLPSALDNRPLKFEEFERLMPQTIYVSATPSQYEVDKSDGEVAQQVIRPTGLLDPVLE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E+ + R+L+T LTKRM+EDL+EYL E I+VRY+HS++ T+E Sbjct: 431 VRPIAIQVDDLLSEVAQRVKVNERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSDIDTVE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 491 RVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVILYAD IT S+ A+ ET RRR+ Q + N + I P+ V +KI +V+D + D Sbjct: 551 NINGKVILYADKITDSMSRAMGETERRRKLQHQFNLDNGIVPKGVSKKITDVMD---VGD 607 Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +D +++ S+ + +L KQMH A NL FE+AA +RD++ + Sbjct: 608 KSADGQDVDNNKVAESRAPYGGPDIATLSHQMDALEKQMHEHAKNLEFEQAAALRDQVAK 667 Query: 793 LKSS 796 L+ + Sbjct: 668 LREA 671 >gi|220932459|ref|YP_002509367.1| excinuclease ABC, B subunit [Halothermothrix orenii H 168] gi|219993769|gb|ACL70372.1| excinuclease ABC, B subunit [Halothermothrix orenii H 168] Length = 672 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/655 (56%), Positives = 482/655 (73%), Gaps = 9/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KG++ + Q LLG TG+GKT+TMA VIE + +P +V+A Sbjct: 7 FKLVSSYSPKGDQPQAIEKLVKGVNKGYRHQTLLGATGTGKTYTMAAVIEKLNKPTLVIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAV YFVSYYDYYQPEAYVP+TDTYIEK++SINE ID++R Sbjct: 67 HNKTLAAQLCSEFREFFPENAVHYFVSYYDYYQPEAYVPQTDTYIEKDASINEDIDKLRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SL ER D ++V+SVSCIYG+G+ E Y + LK+GD E+ +L L+ QY R Sbjct: 127 AATSSLFERRDVLIVASVSCIYGLGNPEDYLDLSCHLKVGDLKERNTILQELIFMQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD I+IFP++ D A RV +FG++I+ I++ +TG+ ++ ++ I IY Sbjct: 187 DIDLSRGHFRVKGDVIDIFPAY-RDEAIRVELFGDEIDRITKINTVTGEVLQEIDEITIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VTP + A+K I+ EL+ RL EL+K+ RL+EAQRLEQR YD+EMLE G C Sbjct: 246 PASHFVTPEDKIKRALKTIQVELEERLKELKKQNRLVEAQRLEQRTRYDMEMLEQMGYCT 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR PG P TL +Y P+D L+ +DESH+TIPQI GMY GD RK L E Sbjct: 306 GIENYSRHLEGRPPGSRPNTLLDYFPDDDFLVIIDESHMTIPQIGGMYAGDRSRKEKLVE 365 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL FEE+ L P I VSATPG +EL+ Q + VEQIIRPTGLVDP V Sbjct: 366 YGFRLPSALDNRPLNFEEFEKLVPRAIYVSATPGPYELKHSQQV-VEQIIRPTGLVDPVV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++ Q++D+ DEI ++ R+L+T LTKRMAEDLTE+L E IRVRY+HS++ TL Sbjct: 425 IVKPTEGQIDDLMDEIQQVIEREERVLVTTLTKRMAEDLTEFLAEAGIRVRYLHSDIDTL 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQTIGRAA Sbjct: 485 ERSEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--IL 737 RNVN +V++YAD IT+S++ AIDET RRR+ QLE NKKH I P ++ + + +V+ P ++ Sbjct: 545 RNVNGRVVMYADKITESMEKAIDETERRRKIQLEFNKKHGITPTTIVKPVRKVLRPEDMI 604 Query: 738 LEDAATTNISIDAQQ----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++D + S+ + + +LS + + + L ++M AADNL FE AA+IRD Sbjct: 605 IKDVDEIDYSVKSGEGEEIKNLSPSEIRHRILELEEEMKEAADNLEFELAAQIRD 659 >gi|33601256|ref|NP_888816.1| excinuclease ABC subunit B [Bordetella bronchiseptica RB50] gi|81837009|sp|Q7WK66|UVRB_BORBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33575691|emb|CAE32769.1| excinuclease ABC subunit B [Bordetella bronchiseptica RB50] Length = 675 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/662 (55%), Positives = 475/662 (71%), Gaps = 1/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AI L +G+ Q LLGVTGSGKT+TMA +I + RPA+V+A Sbjct: 14 FHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 74 PNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+IFP+ ++A R+++F ++IE + F PLTG+ + + +Y Sbjct: 194 DADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IKEEL+ RL +L +G+L+EAQRLEQR +DLEML+ G C+ Sbjct: 254 PGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD RK TL +Y Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPIVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ A R+L+T LTKRMAEDLT++L E +RVRY+HS++ T+E Sbjct: 433 VRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 493 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AIDET RRR KQ++HN H I + V + + E+ID ++ Sbjct: 553 NLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPA 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 S ++ +K ++ L K M A NL FE+AA RD + LKS Sbjct: 613 GHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLD 672 Query: 801 GL 802 G+ Sbjct: 673 GV 674 >gi|253687898|ref|YP_003017088.1| excinuclease ABC, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259710330|sp|C6DDU0|UVRB_PECCP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|251754476|gb|ACT12552.1| excinuclease ABC, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 670 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/665 (55%), Positives = 472/665 (70%), Gaps = 15/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRRKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ K ILY D IT S+ AI ET RRREKQ +N +H I PQ + +KI ++ L+ Sbjct: 545 NLRGKAILYGDKITPSMAKAIGETERRREKQEAYNTEHGIVPQGLNKKISDI-----LQL 599 Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 TN A+ ++ K + ++ L +M A NL FEEAA +RDE+ Sbjct: 600 GQPTNRGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEL 659 Query: 791 KRLKS 795 + L++ Sbjct: 660 QALRA 664 >gi|225175306|ref|ZP_03729301.1| excinuclease ABC, B subunit [Dethiobacter alkaliphilus AHT 1] gi|225169058|gb|EEG77857.1| excinuclease ABC, B subunit [Dethiobacter alkaliphilus AHT 1] Length = 663 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/659 (55%), Positives = 477/659 (72%), Gaps = 1/659 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ+++++ P GDQP AI +L +G+ + Q LLGVTGSGKTFTMA +IE +QRP + Sbjct: 1 MTRFQIKSEFGPQGDQPKAIEELTEGLKKGFRHQTLLGVTGSGKTFTMANIIEKVQRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL SEF++FFP NAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN++I++ Sbjct: 61 VIAHNKTLAAQLCSEFRDFFPDNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDEIEK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSAT +L ER D I+V+SVSCIYG+GS + Y + +V L++G + E++ LV Q+ Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGSPDEYREHVVSLRVGMEKSRDEIVKQLVSIQF 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D+ + R FRV GD +EIFP+ + A RV FG++IE I E LTG+ + + I Sbjct: 181 ERNDVQLERSRFRVRGDVLEIFPASSTEKAVRVEFFGDEIERIREIDTLTGEILGERQHI 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I+ SH+VT R TL AM I+ EL++RL EL +LLEAQRLEQR YDLEM+ G Sbjct: 241 AIFPASHFVTSRDTLEAAMVDIRSELEVRLQELRSRDKLLEAQRLEQRTNYDLEMMNEIG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR++ R G P TL +Y PED LLF+DESH TIPQ+ GMY GD RK TL Sbjct: 301 FCTGIENYSRHMDRRPAGSRPHTLIDYFPEDFLLFIDESHQTIPQVRGMYAGDRSRKETL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS +DNRPL F E+ L + VSATPG +E E Q +VEQIIRPTGL+DP Sbjct: 361 VEHGFRLPSALDNRPLIFHEFEELVNQAVYVSATPGPYEQEHSQQ-VVEQIIRPTGLIDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R + Q++D+Y EI L A+ R+L+T LTKRMAEDLTEY E +RVRY+HSE+ Sbjct: 420 EIIMRPVKGQIDDLYGEIRLRAEANERVLVTTLTKRMAEDLTEYYKELGVRVRYLHSEIN 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGR Sbjct: 480 TLERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ VI+YAD +T S+Q A+DET RRR+ Q+E N++HNI P ++K+ + VI+ Sbjct: 540 AARNVHGTVIMYADKVTDSMQKAMDETERRRQIQMEFNREHNITPATIKKAVRAVIEATQ 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + A ++ LS + K + L K+M AA L+FE+AA +RD I L+ + Sbjct: 600 VAEEALSDYVDKDSPAELSPAERKKTIAKLEKEMKKAAKELDFEQAAHLRDMIAALRKT 658 >gi|254669942|emb|CBA04546.1| excinuclease ABC subunit B [Neisseria meningitidis alpha153] Length = 699 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP+AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPSAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++ Q++++++LV QY+R Sbjct: 155 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K GK H + L K M AA +L FEEAA +RD I+ Sbjct: 634 DSGKG----RRQGKNKVKVGKIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRG 689 Query: 793 LKSSPYF 799 +K F Sbjct: 690 IKEGLLF 696 >gi|251790133|ref|YP_003004854.1| excinuclease ABC subunit B [Dickeya zeae Ech1591] gi|247538754|gb|ACT07375.1| excinuclease ABC, B subunit [Dickeya zeae Ech1591] Length = 670 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/659 (56%), Positives = 474/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSAFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ED+A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFGRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQVVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR T+DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G I++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPQLE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRSAISERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S++ AI+ET RRREKQ +N++H I PQ + +KI +++ P Sbjct: 545 NLNGKAILYGDKITPSMERAINETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQPTH 604 Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + AQ LS K ++ L QM A NL FEEAA +RDEI L+ Sbjct: 605 GRGKGRGKKAAEPAAQYQQLSPKALDQKIRELESQMLAHAQNLEFEEAAHLRDEIHALR 663 >gi|118594781|ref|ZP_01552128.1| excinuclease ABC subunit B [Methylophilales bacterium HTCC2181] gi|118440559|gb|EAV47186.1| excinuclease ABC subunit B [Methylophilales bacterium HTCC2181] Length = 677 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/669 (55%), Positives = 482/669 (72%), Gaps = 8/669 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + + P+GDQP AI +L +G+ + EK Q LLGVTGSGKTFT+A VI + AIVMA Sbjct: 10 YLLHKPFEPAGDQPDAIDKLTEGVTNGEKFQTLLGVTGSGKTFTIANVIARTGKSAIVMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFPHNAVEYFVSYYDYYQPEAYVP D +IEK+SSIN+ I++MR Sbjct: 70 PNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPGRDVFIEKDSSINDHIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLERND I+V++VS IYGIG +Y M++ +++G+ + Q+ ++ LV QY+R Sbjct: 130 SATKALLERNDSIIVATVSAIYGIGDPIAYQGMVLYIEVGEKLLQRNIILRLVSMQYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD I+IFP+ + A RVS+F + +E IS F PLTGQ ++ +Y Sbjct: 190 DFDFSRGCFRVRGDVIDIFPAENSETAIRVSLFDDVVEGISTFDPLTGQIFEKIKRFTVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ AM+ IK EL+ R+ E + +L+EAQR+EQR +DLEML G C+ Sbjct: 250 PSSHYVTPRDTVLNAMEKIKVELQSRIKEFVDQTKLVEAQRIEQRTKFDLEMLNEIGFCK 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GEP PTL +Y+P+D+L+ +DESHVTIPQI GM +GD RK L +Y Sbjct: 310 GIENYSRHLSGRGEGEPAPTLLDYLPKDALMIIDESHVTIPQIGGMSKGDRARKNNLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ + P TI VSATP ++E E + IIVEQ+ RPTGL+DP + Sbjct: 370 GFRLPSAHDNRPLRFEEFEKILPQTIFVSATPANYEAENSK-IIVEQVARPTGLIDPEIF 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A +QV+D+ EI L Q+ R+L+T LTKRMAEDLT+YL E +I+VRY+HSE+ T+E Sbjct: 429 VKPADSQVDDLLSEITLRVQKDERVLVTTLTKRMAEDLTDYLTEHSIKVRYLHSEIDTVE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDV+VGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAAR Sbjct: 489 RVEIIRDLRLGKFDVVVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVI Y ++IT+S++ AIDET RRR KQ++ NK +NI P V K LED Sbjct: 549 NLNGKVIFYGNSITRSMKAAIDETKRRRVKQIQFNKDNNITP--VGIKKKIKDIIDGLED 606 Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A++ + L++ + + L K M A +L+FE AA+ RD++K LK Sbjct: 607 VDEHKRVQEAKKENRKYEDLTEPQILKEISKLEKVMQKFARDLDFENAAKTRDQVKFLKE 666 Query: 796 SPYFQGLDD 804 Y + D Sbjct: 667 RVYGANIKD 675 >gi|300715922|ref|YP_003740725.1| UvrABC system protein B [Erwinia billingiae Eb661] gi|299061758|emb|CAX58874.1| UvrABC system protein B [Erwinia billingiae Eb661] Length = 673 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/665 (55%), Positives = 468/665 (70%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQVTSVVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELADRRKVLLNNNKLLEEQRISQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG +ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGGEVIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+TVLTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVSTQVDDLLSEIRKRVAINERVLVTVLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S++ AI ET RRR KQ +N ++ I PQ + +KI ++++ L Sbjct: 545 NLNGKAILYGDKITPSMERAIGETERRRAKQEIYNAENGIVPQGLNKKIADILE---LGQ 601 Query: 741 AATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 N + DA L LS K + + L QM A NL FEEAA IRD+ Sbjct: 602 GLAKNKSRGRAKAGRIVEDDAPYLDLSPKGLQKKIHQLEAQMQEHAQNLEFEEAANIRDQ 661 Query: 790 IKRLK 794 + +++ Sbjct: 662 LHKVR 666 >gi|212640367|ref|YP_002316887.1| excinuclease ABC subunit B [Anoxybacillus flavithermus WK1] gi|212561847|gb|ACJ34902.1| Excinuclease ABC (subunit B, helicase) [Anoxybacillus flavithermus WK1] Length = 657 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/658 (56%), Positives = 482/658 (73%), Gaps = 3/658 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ FQ+ + Y P GDQP AIA+L++GI +K Q LLG TG+GKTFT++ VI+ + +P + Sbjct: 1 MSAFQLVSAYEPRGDQPKAIAKLVEGIQQGKKHQTLLGATGTGKTFTISNVIQQVNKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID+ Sbjct: 61 VIAHNKTLAGQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSAT +L ER D I+++SVSCIYG+GS E Y +++V L++G +E+ LL LV QY Sbjct: 121 LRHSATSALFERRDVIIIASVSCIYGLGSPEEYRELVVSLRVGMEIERDHLLRRLVDIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R DI RGTFRV GD +EIFP+ ++ R+ FG++IE I E LTG + E + Sbjct: 181 ERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEIERIREVDALTGYVMAEREHV 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I+ SH+VT + A++ I++EL+ RL EL ++G+LLEAQRLEQR YD+EM++ G Sbjct: 241 AIFPASHFVTREEKMKLAIENIEKELEERLCELREQGKLLEAQRLEQRTRYDIEMMKEMG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+LT R PG P TL +Y P+D L+ +DESHVT+PQI GMY GD RK L Sbjct: 301 FCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFLIVIDESHVTLPQIRGMYNGDKARKEVL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS +DNRPL FEE+ I VSATPG +ELE C+ +VEQIIRPTGL+DP Sbjct: 361 VEHGFRLPSALDNRPLTFEEFEQKVNQVIYVSATPGPYELEHCRE-VVEQIIRPTGLLDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +++R Q++D+ DEI R L+T LTK+MAEDLT+YL + I+V Y+HSE+K Sbjct: 420 TIDVRPIAGQIDDLVDEIQKRIACNERTLVTTLTKKMAEDLTDYLKDIGIQVAYLHSEIK 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGR Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N VI+YADTITKS+++AI+ET RRR Q +N++H I P+++++ I +VI Sbjct: 540 AARNANGHVIMYADTITKSMEIAINETKRRRAIQEAYNREHGIVPKTIQKDIPDVIRATF 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T + D + LSK++ A + L ++M AA L+FE AA +RD I LK+ Sbjct: 600 AAEEKETYETKDVRH--LSKEERVALIAKLEQEMKEAAKALHFERAAELRDLILELKA 655 >gi|2909345|emb|CAA74675.1| ultraviolet resistance protein [Neisseria meningitidis] Length = 675 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/667 (54%), Positives = 482/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|302038376|ref|YP_003798698.1| excinuclease ABC subunit B [Candidatus Nitrospira defluvii] gi|300606440|emb|CBK42773.1| Excinuclease ABC, subunit B [Candidatus Nitrospira defluvii] Length = 665 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/663 (54%), Positives = 476/663 (71%), Gaps = 18/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQ AI +L GI + ++ Q LLGVTGSGKTFTMA V+E +Q+P +V+ Sbjct: 4 FKLDAPFKPCGDQGQAIEKLTSGILAGKQHQALLGVTGSGKTFTMANVVERVQKPTLVLV 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFPHNAVEYF+SYYDYYQPEAY+P++DTYI K++SIN+ ID+MRH Sbjct: 64 HNKTLAGQLYQEFKQFFPHNAVEYFISYYDYYQPEAYIPQSDTYIAKDASINDAIDQMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL+RND ++VSSVSCIYG+GS E Y M+V L+ G ++++L+ LV+ QY R Sbjct: 124 AATTSLLQRNDVLIVSSVSCIYGLGSPEVYHDMLVYLEEGMETRREKILAKLVEIQYARN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR GD IEIFP+ E + R+ +FG+ ++ I E PLTG+ + + I IY Sbjct: 184 DVDFHRGTFRARGDVIEIFPASSEAKSVRIELFGDVVDAIHEIDPLTGKSLGKLPKIAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 N+HY+ A+ I+EEL R+ +K G+LLEAQR+EQR +DLEM+ G C Sbjct: 244 PNTHYLIAPDRYERAITGIEEELDARVAAFKKNGQLLEAQRIEQRTKFDLEMIRAMGYCH 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG+PPPTL +Y P+D LL VDESH T+PQ+ GMY GDF RK TL +Y Sbjct: 304 GIENYSRHLSGRAPGDPPPTLLDYFPKDFLLIVDESHATVPQVGGMYEGDFSRKRTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + I VSATPG +ELE +G ++EQIIRPTGL+DP ++ Sbjct: 364 GFRLPSAVDNRPLKFAEFERMLKQVIYVSATPGPYELEHAKGEVIEQIIRPTGLMDPLID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RSA+ QV+++ E+ A +G R+L+T LTKRMAEDLTEY ++ ++VRY+HS++KTLE Sbjct: 424 VRSAKGQVDNLLAEVRAEAAKGNRVLVTTLTKRMAEDLTEYYHDLGVKVRYLHSDIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEG+LRS SLIQT GRAAR Sbjct: 484 RAEIIRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSHRSLIQTAGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ +VI Y DTIT S++ A+DET RRR Q +N+ H I P+S+K++I P+L D Sbjct: 544 NLDGRVIFYGDTITDSMRRAMDETARRRHIQEAYNEAHGITPESIKKQI-----PVL--D 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFEEAARIRDEIK 791 AT + + QL L+ + A+ ++ L +M AA L FE AA +R+ I+ Sbjct: 597 YATG--AGNEGQLELAAESADAYGATGDTEQLIRRLEVEMKAAAKKLEFERAAELRNRIR 654 Query: 792 RLK 794 L+ Sbjct: 655 TLR 657 >gi|121635041|ref|YP_975286.1| excinuclease ABC subunit B [Neisseria meningitidis FAM18] gi|120866747|emb|CAM10500.1| excinuclease ABC subunit B [Neisseria meningitidis FAM18] gi|325142556|gb|EGC64956.1| excinuclease ABC, B subunit [Neisseria meningitidis 961-5945] gi|325198479|gb|ADY93935.1| excinuclease ABC, B subunit [Neisseria meningitidis G2136] Length = 675 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ +S ++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 610 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|77409684|ref|ZP_00786351.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1] gi|77171705|gb|EAO74907.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1] Length = 663 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F++ + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI + +P Sbjct: 5 KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E FP+ ++ A+R+ FG++I+ I E LTG+ + VE Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEFFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I+ +H++T + A+ I+ E++ ++ EKEG+L+EAQR+ QR YD+EML Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ +VEQIIRPTGL+ Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTKRMAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN N VI+YAD IT S+Q A+DET RRR Q+++N+KH I PQ++K++I ++I Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ +D SLSKK+ +A +K+L+KQM AA+ L+FE AA+IRD I LK+ Sbjct: 604 TKSNDSDKPEKVVDYS--SLSKKERQAKIKALQKQMQDAAELLDFELAAQIRDVILELKA 661 >gi|319794406|ref|YP_004156046.1| excinuclease ABC, b subunit [Variovorax paradoxus EPS] gi|315596869|gb|ADU37935.1| excinuclease ABC, B subunit [Variovorax paradoxus EPS] Length = 705 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/661 (54%), Positives = 481/661 (72%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI L+ G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 33 FELFQPYPPAGDQPKAIQGLVDGVIDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 92 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR Sbjct: 93 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 152 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D ++V++VS IYGIG+ E Y+QM +++GD + Q++++S L++ QY R Sbjct: 153 SATKSVLERRDTVIVATVSAIYGIGTPEDYTQMRFIMRVGDKIGQRDVISRLIRMQYTRN 212 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+I++FP+ ++A R+ +F ++IE + F PLTG+ + + +Y Sbjct: 213 EQDFARGTFRVRGDTIDVFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKIPRFTVY 272 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + A++ IK EL RL E +G+L+EAQRLEQR +DLEML G C+ Sbjct: 273 PSSHYVTPRDKVLGAVETIKIELAERLKEFVSQGKLVEAQRLEQRTRFDLEMLAEIGHCK 332 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PG+PP TL +Y+P+D+L+F+DESH I Q++ MY GD RK TL EY Sbjct: 333 GIENYSRHLSGAAPGDPPATLTDYLPKDALMFLDESHQMIGQLNAMYSGDRARKTTLVEY 392 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ I VSATP +E + G +VEQ++RPTGL+DP VE Sbjct: 393 GFRLPSAMDNRPLKFEEFEARVRQAIFVSATPAQYEKDHS-GNVVEQLVRPTGLIDPEVE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + ++ R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+E Sbjct: 452 VRPATHQVDDVLGEIRIRVEKNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDTVE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 512 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD +T S++ AIDET RRR +Q+ HN+ + I P+S+ +++ ++ID + E Sbjct: 572 NLHGKAILYADRMTDSMKKAIDETERRRARQIAHNEANGITPRSIVKQVRDLIDGVYSEK 631 Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 +D A+ +S+K +K L K M A NL FE+AAR+RD++ L+ Sbjct: 632 TGKEMAKLDLERAKVEDMSEKDIAREIKRLEKLMLEHARNLEFEKAARVRDQLALLREQA 691 Query: 798 Y 798 + Sbjct: 692 F 692 >gi|325130430|gb|EGC53194.1| excinuclease ABC, B subunit [Neisseria meningitidis OX99.30304] Length = 675 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K S F Sbjct: 666 IKESLLF 672 >gi|238759771|ref|ZP_04620929.1| UvrABC system protein B [Yersinia aldovae ATCC 35236] gi|238702003|gb|EEP94562.1| UvrABC system protein B [Yersinia aldovae ATCC 35236] Length = 670 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/660 (55%), Positives = 469/660 (71%), Gaps = 5/660 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+ Sbjct: 4 IFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 124 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ ++ A RV +F ++E++S F PLTGQ V + Sbjct: 184 NDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVEKLSVFDPLTGQLQHEVPRFTV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK EL R L +LLE QR+ QR +DLEM+ G C Sbjct: 244 YPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRIAQRTQFDLEMMNELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL E Sbjct: 304 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ +++Q++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGLLDPLI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ Sbjct: 424 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----D 734 RN+N K ILY D IT S++ AI ET RRR KQ HN++H I PQ + +KI +++ Sbjct: 544 RNLNGKAILYGDRITASMEKAIGETERRRVKQQIHNQEHGITPQGLNKKIGDILQLGKPS 603 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ SL K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 604 TRGKGKGRGGKVADTHDYQSLPPKALDQKIRELEAKMYTHAQNLEFEQAADLRDQVHQLR 663 >gi|55821473|ref|YP_139915.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311] gi|55823402|ref|YP_141843.1| excinuclease ABC subunit B [Streptococcus thermophilus CNRZ1066] gi|81820260|sp|Q5LYS1|UVRB_STRT1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|81820426|sp|Q5M3D5|UVRB_STRT2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|55737458|gb|AAV61100.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311] gi|55739387|gb|AAV63028.1| excinuclease ABC subunit B [Streptococcus thermophilus CNRZ1066] Length = 668 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 481/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 15 FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 75 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE+++++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 315 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + Sbjct: 554 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNE 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A +++ +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 614 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666 >gi|20808375|ref|NP_623546.1| excinuclease ABC subunit B [Thermoanaerobacter tengcongensis MB4] gi|22257068|sp|Q8R8M4|UVRB_THETN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|20516986|gb|AAM25150.1| Helicase subunit of the DNA excision repair complex [Thermoanaerobacter tengcongensis MB4] Length = 662 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/658 (55%), Positives = 479/658 (72%), Gaps = 12/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G+ + Q LLGVTGSGKTFTMA +I + RP +V+A Sbjct: 4 FKLVSNFKPTGDQPQAIEKLVEGVRRGYRYQTLLGVTGSGKTFTMANIIARLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPETDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++ L+ G ++ E++ LV+ QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMVKDRDEIIRKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IE+FP+ + A R+ +FG++I+ I+E LTG+ + + + I+ Sbjct: 184 DINFTRGKFRVRGDVIEVFPASFSNKAIRIELFGDEIDRIAEIDVLTGEVLGYRKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T R L A+K I+EEL+ R EL++ G+++EA+RL QR YDLEML+ G C+ Sbjct: 244 PASHYATSRDKLERAIKSIREELEERYKELKEMGKIVEAERLWQRTNYDLEMLQEMGYCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y PED L+F+DESHVTIPQ+ GMY GD RK L EY Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPEDFLIFIDESHVTIPQLRGMYNGDRSRKEALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +E+E + +VEQ+IRPTGLVDP V Sbjct: 364 GFRLPSAYDNRPLTFEEFEQRVNQVIFVSATPGPYEMEHSEQ-VVEQLIRPTGLVDPEVI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI +G R+L+T LTK+MAEDL++YL E IRVRY+HS+++T+E Sbjct: 423 VRPVKGQVDDLIAEIRKTVAKGYRVLVTTLTKKMAEDLSDYLKEMGIRVRYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N +VI+YADTIT S++ AIDET RRR+ Q+E+N+KH I P++V + + +VI + Sbjct: 543 NAEGRVIMYADTITNSMRRAIDETNRRRKIQMEYNEKHGIVPKTVVKGVRDVIQATQVAE 602 Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E T D + K+ ++ L K+M AA L FE+AA++RD I L+ Sbjct: 603 KEEKYEKTANFYDPDVI-------KSTIEQLEKEMRQAAIELQFEKAAKLRDMILELR 653 >gi|22537607|ref|NP_688458.1| excinuclease ABC subunit B [Streptococcus agalactiae 2603V/R] gi|25011573|ref|NP_735968.1| excinuclease ABC subunit B [Streptococcus agalactiae NEM316] gi|76797629|ref|ZP_00779899.1| excinuclease ABC, B subunit [Streptococcus agalactiae 18RS21] gi|77405185|ref|ZP_00782283.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B] gi|77414116|ref|ZP_00790283.1| excinuclease ABC, B subunit [Streptococcus agalactiae 515] gi|81845404|sp|Q8DYL6|UVRB_STRA5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|81845584|sp|Q8E471|UVRB_STRA3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|22534492|gb|AAN00331.1|AE014259_2 excinuclease ABC, B subunit [Streptococcus agalactiae 2603V/R] gi|24413112|emb|CAD47190.1| excinuclease ABC chain B [Streptococcus agalactiae NEM316] gi|76586990|gb|EAO63478.1| excinuclease ABC, B subunit [Streptococcus agalactiae 18RS21] gi|77159827|gb|EAO70971.1| excinuclease ABC, B subunit [Streptococcus agalactiae 515] gi|77176187|gb|EAO78958.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B] Length = 663 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F++ + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI + +P Sbjct: 5 KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + VE Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I+ +H++T + A+ I+ E++ ++ EKEG+L+EAQR+ QR YD+EML Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ +VEQIIRPTGL+ Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTKRMAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN N VI+YAD IT S+Q A+DET RRR Q+++N+KH I PQ++K++I ++I Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ +D SLSKK+ +A +K+L++QM AA+ L+FE AA+IRD I LK+ Sbjct: 604 TKSNDSDKPEKVVDYS--SLSKKERQAEIKALQQQMQEAAELLDFELAAQIRDVILELKA 661 >gi|317130269|ref|YP_004096551.1| excinuclease ABC subunit B [Bacillus cellulosilyticus DSM 2522] gi|315475217|gb|ADU31820.1| excinuclease ABC, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 666 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/659 (55%), Positives = 482/659 (73%), Gaps = 3/659 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ + Y P GDQP AI +L++GI+ +K Q LLG TG+GKTFT++ VI+ +++P +V Sbjct: 7 TGFELVSKYEPQGDQPQAIKELVEGINEGKKFQTLLGATGTGKTFTISNVIKEVKKPTLV 66 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEK++SIN++ID++ Sbjct: 67 IAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYIPHSDTYIEKDASINDEIDKL 126 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSAT SL ER D I+V+SVSCIYG+GS YS+++V L++G E+ +LL +LV QY+ Sbjct: 127 RHSATSSLFERKDVIIVASVSCIYGLGSPTEYSELVVSLRVGMEKERNQLLRNLVDIQYE 186 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI RGTFRV GD +EIFP+ ++ R+ FG++I+ I+E LTG+ + Sbjct: 187 RNDINFTRGTFRVRGDVVEIFPASRDEHCLRIEFFGDEIDRITEVDALTGEILGERNHAA 246 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ SH+VT L AM I++EL+ L E+ ++G+LLEAQRLEQR YDLEM++ G Sbjct: 247 IFPASHFVTREEKLKKAMVRIEQELEETLKEMNEKGKLLEAQRLEQRTRYDLEMMQEMGY 306 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+LT R G P TL +Y PED L+ VDESHVT+PQ+ GMY GD RK L Sbjct: 307 CSGIENYSRHLTFREAGATPYTLLDYFPEDFLIVVDESHVTLPQVRGMYNGDQARKGVLV 366 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS DNRPL+FEE+ TI VSATPG +EL+ C +VEQIIRPTGL+DP Sbjct: 367 DHGFRLPSAKDNRPLKFEEFEKHIHQTIFVSATPGPYELDICPK-MVEQIIRPTGLLDPT 425 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V++R Q++D+ +EI L ++ R+L+T LTK+M+EDLT+YL E I VRY+HS++KT Sbjct: 426 VDVRPIEGQIDDLIEEIRLRKERNERVLVTTLTKKMSEDLTDYLKEVGISVRYLHSDIKT 485 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LERI+IIR+LRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQT+GRA Sbjct: 486 LERIQIIRELRLGHFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTMGRA 545 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N VI+YAD ITKS+ +AI ET RRRE Q E N+KH I PQ++++ + ++I Sbjct: 546 ARNANGHVIMYADKITKSMDIAIGETKRRREIQKEFNEKHGITPQTIQKAVPQLIQATYA 605 Query: 739 EDA--ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A A + A + LSKK+ + ++ + +M AA NLNFE AA +RD I LK+ Sbjct: 606 AEADEAYEVKEVAAPKQKLSKKEREKVIERMEMEMKDAAKNLNFERAAELRDVIIELKA 664 >gi|121604469|ref|YP_981798.1| excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2] gi|120593438|gb|ABM36877.1| Excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2] Length = 702 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/661 (54%), Positives = 479/661 (72%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AIA+L++G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 28 FELFQPYLPAGDQPQAIAKLVEGVRDGEAFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 88 PNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D I+V++VS IYGIG+ E Y+QM + GD + Q+++++ L++ QY R Sbjct: 148 SATKSVLERRDTIIVATVSAIYGIGAPEDYTQMRFIARTGDKMGQRDVIARLIRMQYSRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD I+IFP+ ++A R+ +F ++IE + F PLTG+ + + +Y Sbjct: 208 EQDFSRGTFRVRGDVIDIFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKIPRFVVY 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A++ IK EL R+ + EG+L+EAQR+EQR +DLEML G C+ Sbjct: 268 PKSHYVTPRDKVLAAVETIKLELSERVGQFIAEGKLVEAQRIEQRTRFDLEMLGEIGHCK 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+ PG P TL +Y+P+DS++F+DESHV I Q++ MY GD RK TL EY Sbjct: 328 GIENYTRHLSASAPGSAPSTLCDYLPKDSVMFLDESHVMIGQLNAMYNGDRARKTTLVEY 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATP ++E E G +VEQ++RPTGLVDP VE Sbjct: 388 GFRLPSALDNRPLKFEEFESKVRQAIFVSATPAAYENEHA-GQVVEQLVRPTGLVDPQVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + + R+L+T LTKRMAE LT+YL E ++VRY+HS+V+T+E Sbjct: 447 VRPATHQVDDVLQEIRIRVEINERVLITTLTKRMAEQLTDYLTENGVKVRYLHSDVETVE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD +T S+++A+ ET RRR KQL N H I P+S+ ++I ++ID + E Sbjct: 567 NLNGRAILYADRVTDSMKMAMGETERRRNKQLAFNTLHGITPRSIVKRIKDLIDGVYSEK 626 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 + ++ Q+ +S+K +K L KQM A NL FE+AAR+RD++ LK Sbjct: 627 SGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQMVEHAKNLEFEKAARVRDQLHVLKQQA 686 Query: 798 Y 798 + Sbjct: 687 F 687 >gi|162448934|ref|YP_001611301.1| excinuclease ABC subunit B [Sorangium cellulosum 'So ce 56'] gi|161159516|emb|CAN90821.1| excinuclease ABC, B subunit [Sorangium cellulosum 'So ce 56'] Length = 719 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/659 (54%), Positives = 476/659 (72%), Gaps = 2/659 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ +++ P GDQP A+ ++ E Q+LLGVTGSGKTFT AKVIE +Q+P ++ Sbjct: 3 THFELVSEFKPCGDQPRALQEICSAFEQGEAFQVLLGVTGSGKTFTAAKVIEKLQKPTLI 62 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQLY E + FP+NAV YFVSYYDYYQPEAYVP +DTYIEK++ IN+ IDRM Sbjct: 63 MAPNKTLAAQLYGEMRELFPNNAVHYFVSYYDYYQPEAYVPTSDTYIEKDAIINDAIDRM 122 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R D I+V+SVSCIYGIGS ESY ++++L+ G + + ELL LV QY Sbjct: 123 RHAATHALLSRPDVIIVASVSCIYGIGSAESYHGLLIKLERGTEIRRDELLRRLVDIQYT 182 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ RGTFRV GD +EIFP++ E +A RV FG++IE I E P+ G+ + ++ Sbjct: 183 RNDVDFHRGTFRVRGDVVEIFPAYEEALAIRVEFFGDEIEAIKEVDPVRGKVVGQLDRYA 242 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ SHYVT + L A++ I+EEL+ R+ ++ R LE QR+EQR YDLEMLE G Sbjct: 243 VFPGSHYVTEQQQLRLAIQAIREELRERIDFYDRAVRFLEKQRIEQRTMYDLEMLEQMGF 302 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+L+GR GEPPPTL +Y P+D LL +DESH T+PQ+ M+RGD RK TL Sbjct: 303 CNGIENYSRHLSGRKAGEPPPTLIDYFPKDFLLIIDESHQTVPQVGAMFRGDRARKETLV 362 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS +DNRPL+FEE+ + VSATPG +EL++ G +VEQIIRPTGL+DP Sbjct: 363 EYGFRLPSALDNRPLKFEEFEQHYAQVLFVSATPGDYELQKSAGSVVEQIIRPTGLIDPQ 422 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + IR QV+D+ I +G R+L+T LTKRMAEDLTEY E IRVRY+HS+V T Sbjct: 423 IHIRPVSGQVDDLLARIRERVGRGDRVLVTTLTKRMAEDLTEYYTELGIRVRYLHSDVDT 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+R+EI+RDLR G+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRA Sbjct: 483 LQRVEILRDLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRA 542 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ +V++YAD IT++++ A+DET RRR Q +NK+H I P +VK+ I+++ Sbjct: 543 ARNVHGEVVMYADRITEAMKRAMDETNRRRAIQEAYNKEHGITPATVKKAILDLSPTSGT 602 Query: 739 ED--AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D A + A + + + + +LR++M AA+NL FE+AAR+RD++++LK+ Sbjct: 603 RDYYAVPKGPAKPAAEAARAAVDLVDQIDALRQEMFAAAENLEFEKAARLRDQLRQLKA 661 >gi|124516185|gb|EAY57693.1| Exinuclease ABC, B subunit (UvrB) [Leptospirillum rubarum] Length = 701 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/658 (55%), Positives = 472/658 (71%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + PSGDQ AI L +G+ + + Q LLGVTGSGKTFTMA VI+ +Q+P++++ Sbjct: 24 MFRLAAGFSPSGDQERAIDVLSEGVLAGKTHQTLLGVTGSGKTFTMANVIQRVQKPSLIL 83 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY EFK FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S++N+ IDRMR Sbjct: 84 APNKTLAAQLYREFKAFFPDNRVEYFVSYYDYYQPEAYIPSTDTYIEKDSAVNDLIDRMR 143 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT SLLER D IVV+SVSCIYG+GS ESY +M + L+ G ++ +++L+ LV QY+R Sbjct: 144 HAATSSLLERRDTIVVASVSCIYGLGSPESYQKMHLYLERGQTLTREKLIERLVTIQYQR 203 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RGTFRV GD ++I P+ ED A RV +FG++IE I E PLTG ++ + ++ I Sbjct: 204 NDIELSRGTFRVRGDVVDIIPASYEDRAIRVELFGDEIERIREMDPLTGHELAVIPSVII 263 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYV P L+ AM I+EEL R+ E + G+LLEAQR+EQR +DLEM++ G C Sbjct: 264 YPGTHYVLPPDELDRAMAGIEEELHARIREFRQSGKLLEAQRIEQRTLFDLEMIKEIGYC 323 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L+GR GEPPPTLF+Y P+D L+ VDESHV IPQ+ GMY GD+ RK +L E Sbjct: 324 HGIENYSRHLSGRKAGEPPPTLFDYFPDDFLVIVDESHVAIPQVGGMYHGDYSRKKSLVE 383 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRPL+F E+ ++ VSATPG +EL G+ VEQIIRPTGL DP + Sbjct: 384 YGFRLPSAFDNRPLKFFEFEKTARQSLYVSATPGPYELRMSGGVTVEQIIRPTGLCDPEI 443 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+ A QV+ + EI QG R+L+T LTK+MAE+LTEYL ER +RVRY+HSE+ TL Sbjct: 444 EVVPATHQVDHLLGEIRTTVGQGDRVLVTTLTKKMAENLTEYLEERQVRVRYLHSEIDTL 503 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+RDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT GRAA Sbjct: 504 ERMEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRRSLIQTAGRAA 563 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV +VI Y D +T S++ AI ET RRRE Q+ +N + I P+ ++++I E + + Sbjct: 564 RNVRGRVIFYGDKVTGSMEEAILETRRRREIQMAYNLERGITPRGIRKEIPESLYAVSEG 623 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 D ++ + + L K+ +RK M AA +L FE+AA RD ++ P Sbjct: 624 DYVDVSLVEEVRGRLLEKEGDALPDGEIRKLMEKAASDLEFEKAAYYRDILRARGRDP 681 >gi|256959893|ref|ZP_05564064.1| excinuclease ABC [Enterococcus faecalis Merz96] gi|256964403|ref|ZP_05568574.1| excinuclease ABC [Enterococcus faecalis HIP11704] gi|293384724|ref|ZP_06630578.1| excinuclease ABC subunit B [Enterococcus faecalis R712] gi|293387464|ref|ZP_06632016.1| excinuclease ABC subunit B [Enterococcus faecalis S613] gi|307272574|ref|ZP_07553827.1| excinuclease ABC subunit B [Enterococcus faecalis TX0855] gi|312908577|ref|ZP_07767520.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 512] gi|312910502|ref|ZP_07769347.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 516] gi|256950389|gb|EEU67021.1| excinuclease ABC [Enterococcus faecalis Merz96] gi|256954899|gb|EEU71531.1| excinuclease ABC [Enterococcus faecalis HIP11704] gi|291077974|gb|EFE15338.1| excinuclease ABC subunit B [Enterococcus faecalis R712] gi|291083115|gb|EFE20078.1| excinuclease ABC subunit B [Enterococcus faecalis S613] gi|306510859|gb|EFM79876.1| excinuclease ABC subunit B [Enterococcus faecalis TX0855] gi|310625463|gb|EFQ08746.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 512] gi|311289198|gb|EFQ67754.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 516] gi|315170673|gb|EFU14690.1| excinuclease ABC subunit B [Enterococcus faecalis TX1342] Length = 665 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS++KTLE Sbjct: 429 IRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAAR Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + +D LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664 >gi|325201958|gb|ADY97412.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240149] Length = 675 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K S F Sbjct: 666 IKESLLF 672 >gi|313668467|ref|YP_004048751.1| excinuclease ABC subunit B [Neisseria lactamica ST-640] gi|313005929|emb|CBN87386.1| excinuclease ABC subunit B [Neisseria lactamica 020-06] Length = 675 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/663 (54%), Positives = 481/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++ Q++++++LV QY+R Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFTREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGK----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + + + + + L K M AA +L FEEAA +RD I+ +K S Sbjct: 610 DSGKGRRQGKNKVKVGEIRNEEDAIKEISKLEKAMQQAARDLQFEEAAVLRDRIQNIKES 669 Query: 797 PYF 799 F Sbjct: 670 MLF 672 >gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [Streptococcus agalactiae A909] gi|77411086|ref|ZP_00787440.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111] gi|90111055|sp|Q3K051|UVRB_STRA1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|76562803|gb|ABA45387.1| UvrABC system, B protein [Streptococcus agalactiae A909] gi|77162909|gb|EAO73866.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111] Length = 663 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F++ + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI + +P Sbjct: 5 KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + VE Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I+ +H++T + A+ I+ E++ ++ EKEG+L+EAQR+ QR YD+EML Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L YGFRLPS +DNRPLR EE+ + VSATPG +E+ Q +VEQIIRPTGL+ Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQTD-TVVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTKRMAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN N VI+YAD IT S+Q A+DET RRR Q+++N+KH I PQ++K++I ++I Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ +D SLSKK+ +A +K+L+KQM AA+ L+FE AA+IRD I +LK+ Sbjct: 604 TKSNDSDKPEKVVDYS--SLSKKERQAEIKALQKQMQEAAELLDFELAAQIRDVILKLKA 661 >gi|91793153|ref|YP_562804.1| excinuclease ABC subunit B [Shewanella denitrificans OS217] gi|91715155|gb|ABE55081.1| Excinuclease ABC subunit B [Shewanella denitrificans OS217] Length = 676 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/665 (54%), Positives = 478/665 (71%), Gaps = 12/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P+GDQP AI +L++G+ + Q LLGVTGSGKT+T+A VI+ M RP I+MA Sbjct: 6 FDLHFPFPPAGDQPTAIRKLVEGLEAGLACQTLLGVTGSGKTYTIANVIKTMGRPTIIMA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N I++MR Sbjct: 66 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD + Q+++L L + QYKR Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDPMGQRDILHRLSELQYKRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGT+RV G+ I+IFP+ E A RV +F ++IE +SEF PLTGQ + + +Y Sbjct: 186 DIELSRGTYRVRGEVIDIFPADSERDAIRVELFDDEIERLSEFDPLTGQIKKRLARTTVY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A ++IKEEL+ R L +L+EAQR+ +R+ YD+EM+ G C Sbjct: 246 PKTHYVTPREKIIAATEFIKEELRERRQHLLDNNKLIEAQRITERVQYDVEMMVELGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PG PPTL +Y+P D LL +DESHVT+PQI MY+GD RK TL EY Sbjct: 306 GIENYSRYLSGRTPGSAPPTLLDYLPSDGLLIIDESHVTVPQIGAMYKGDRSRKTTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P T+ VSATP +E ++ G I EQ++RPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFEQLMPQTVFVSATPSQYEFDKSAGEIAEQVVRPTGLLDPVLE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ EI R+L+T LTK+M+EDLT+YL E ++VRY+HS++ T+E Sbjct: 426 IRPVAIQVDDLLSEIAKRVAVNERVLVTTLTKKMSEDLTDYLDEHGVKVRYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVILYAD +TKS+ AI+ET RRREKQ +HN + I P+ V + I +V+D + E+ Sbjct: 546 NINGKVILYADRVTKSMAKAIEETDRRREKQHQHNLANGITPKGVVKSITDVMD-VGDEN 604 Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------LKSLRKQMHLAADNLNFEEAARIRDE 789 + T ++ K G+ ++ L KQM A +L FE+AA +RDE Sbjct: 605 STTGYRKTAPMPGKVASKPGQYDDLNSISELSRAIEKLEKQMLQHARDLEFEQAAALRDE 664 Query: 790 IKRLK 794 + L+ Sbjct: 665 VHALR 669 >gi|116628195|ref|YP_820814.1| excinuclease ABC subunit B [Streptococcus thermophilus LMD-9] gi|122267209|sp|Q03JK4|UVRB_STRTD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116101472|gb|ABJ66618.1| Excinuclease ABC subunit B [Streptococcus thermophilus LMD-9] Length = 668 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 481/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 15 FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 75 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE+++++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 315 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + Sbjct: 554 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNE 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A +++ +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 614 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666 >gi|322833786|ref|YP_004213813.1| excinuclease ABC, B subunit [Rahnella sp. Y9602] gi|321168987|gb|ADW74686.1| excinuclease ABC, B subunit [Rahnella sp. Y9602] Length = 668 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/657 (55%), Positives = 467/657 (71%), Gaps = 3/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I++FP+ +D+A R+ +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P +I VSATPG +ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S+ AI+ET RRR KQ +N ++ I P + +KI +++ P Sbjct: 545 NLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLGQPKT 604 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + SL+ K + +K L +M+ A NL FEEAA RDE+ L+ Sbjct: 605 KKNKDKRDAEAAQTFKSLTPKALEQRIKELESKMYAHAQNLEFEEAANTRDELHALR 661 >gi|325847234|ref|ZP_08169986.1| excinuclease ABC, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480918|gb|EGC83966.1| excinuclease ABC, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 659 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/662 (54%), Positives = 483/662 (72%), Gaps = 8/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P GDQP AI +L GI + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 6 FVIKSDYTPKGDQPQAIKKLADGIKEGKHHQILQGVTGSGKTFTMANIIQEVQRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID++RH Sbjct: 66 HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E Y ++++ L+ G + +++ L+++Q+ R Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYKKLVLSLRPGQEISPDQVMKELIERQFVRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR GD ++IFP+ ++ A R+ FG++I+ ISEF LTG+ I ++ IY Sbjct: 186 DFDFSRGTFRKRGDVLDIFPAGNDEKAIRIEFFGDEIDRISEFDSLTGKVISHISHGYIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ IKEELK RL ELE E +L+EAQRLEQR YD+EMLE G C Sbjct: 246 PASHYATTAEKAEAAIVTIKEELKERLAELESENKLVEAQRLEQRTNYDIEMLEEIGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R PG P TL +Y P+D +LFVDESHV+IPQ+ GMY GD RK L +Y Sbjct: 306 GIENYSRHMSQREPGSRPATLIDYFPDDFVLFVDESHVSIPQVGGMYEGDRSRKQNLVDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L T+ VSATPG +E+E+ G +VEQIIRPTGL+DP ++ Sbjct: 366 GFRLPSALDNRPLKFKEFEKLINQTVYVSATPGPYEMEKTGGEVVEQIIRPTGLLDPLID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ + I+ ++ R+L+T LTKRMAEDLT+YL E I+V+Y+HS++KT+E Sbjct: 426 VKPVENQIDDLIENIHQTIEKKERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S++ AI+ET RRR+ Q E NKKH I P ++K+ I E+I + E Sbjct: 546 NSEGHVIMYADKITRSMKKAIEETERRRKIQTEFNKKHGITPTTIKKNIAEIIQ--VTEK 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 A T+ ++ S ++ + L +L +M+ AA+ L+FE+AA +RD+I ++K F Sbjct: 604 AENTS----EEKEEFSPEQVENILINLESEMYKAAEELDFEKAASLRDQIAKMKRD--FA 657 Query: 801 GL 802 G+ Sbjct: 658 GI 659 >gi|319745424|gb|EFV97731.1| excision endonuclease subunit UvrB [Streptococcus agalactiae ATCC 13813] Length = 663 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F++ + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI + +P Sbjct: 5 KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVITQVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + VE Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I+ +H++T + A+ I+ E++ ++ EKEG+L+EAQR+ QR YD+EML Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L YGFRLPS +DNRPLR EE+ + VSATPG +E+ Q +VEQIIRPTGL+ Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQTD-TVVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTKRMAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN N VI+YAD IT S+Q A+DET RRR Q+++N+KH I PQ++K++I ++I Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ +D SLSKK+ +A +K+L+KQM AA+ L+FE AA+IRD I +LK+ Sbjct: 604 TKSNDSDKPEKIVDYS--SLSKKERQAEIKALQKQMQEAAELLDFELAAQIRDVILKLKA 661 >gi|304387358|ref|ZP_07369550.1| excision endonuclease subunit UvrB [Neisseria meningitidis ATCC 13091] gi|304338609|gb|EFM04727.1| excision endonuclease subunit UvrB [Neisseria meningitidis ATCC 13091] Length = 716 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 52 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 172 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 351 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650 Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ +S ++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 651 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 710 Query: 797 PYF 799 F Sbjct: 711 LLF 713 >gi|256545641|ref|ZP_05472998.1| excinuclease ABC, B subunit [Anaerococcus vaginalis ATCC 51170] gi|256398617|gb|EEU12237.1| excinuclease ABC, B subunit [Anaerococcus vaginalis ATCC 51170] Length = 659 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/654 (55%), Positives = 480/654 (73%), Gaps = 6/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P GDQP AI +L GI + + Q+L GVTGSGKTFTMA +I+ +Q+P +V+A Sbjct: 6 FILKSDYTPKGDQPDAIKKLACGIKNGKAHQILQGVTGSGKTFTMANIIQEVQKPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID++RH Sbjct: 66 HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E Y ++++ L+ G + +E++ L+++Q+ R Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYRKLVLSLRPGQEISPEEVMKELIERQFVRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR GD ++IFP+ E+ A RV FG++I+ ISEF LTG+ ++ IY Sbjct: 186 DFDFSRGTFRRRGDVLDIFPAGNEEKAIRVEFFGDEIDRISEFDSLTGKVTSHISHGYIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ IKEELK RL+ELE E +L+EAQRLEQR YD+EMLE G C Sbjct: 246 PASHYATSAEKAAAAITTIKEELKERLVELENENKLVEAQRLEQRTNYDIEMLEEIGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R PG P TL +Y P+D +LFVDESHV+IPQ+ GMY GD RK L ++ Sbjct: 306 GIENYSRHLSQREPGSRPYTLIDYFPDDFMLFVDESHVSIPQVGGMYEGDRSRKQNLVDF 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L TI VSATPG +E+E+ G ++EQIIRPTGL+DP ++ Sbjct: 366 GFRLPSALDNRPLKFPEFEKLIKQTIYVSATPGPYEMEKTGGKVIEQIIRPTGLLDPLID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ + I+ + R+L+T LTKRMAEDLT+YL E I+V+Y+HS++KT+E Sbjct: 426 VRPVENQIDDLIENIHQIIDKNERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S++ AIDET RRR+ Q E N+KH I P ++K+ I E+I Sbjct: 546 NSKGHVIMYADKITRSMKKAIDETERRRKIQTEFNEKHGITPTTIKKNIAEII------Q 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +++ + S+++ + + +L +M+ AA+ L+FE+AA+IRD+I ++K Sbjct: 600 VTKSTENVEEVKEEFSQEQIENIIINLETEMYKAAEELDFEKAAQIRDQIAKMK 653 >gi|148653352|ref|YP_001280445.1| excinuclease ABC subunit B [Psychrobacter sp. PRwf-1] gi|148572436|gb|ABQ94495.1| Excinuclease ABC subunit B [Psychrobacter sp. PRwf-1] Length = 705 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/663 (55%), Positives = 480/663 (72%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M TD+ P+GDQP AI +L+KG+ + QLLLGVTGSGKT+TMAKVI QRP I+MA Sbjct: 40 FEMVTDFEPAGDQPQAIEKLVKGVEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK+S+IN+ ID+MR Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I++SSVS IYG+G ESY +M++ + +GD V++ L+ LV QY R Sbjct: 160 SATRALLERRDAIIISSVSSIYGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRN 219 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT+R+ G+ ++I+P+ E +A R+SMF +++E+IS F PLTG+ +R+V I IY Sbjct: 220 ELDFERGTYRLRGELLDIYPAESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIY 279 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR L A K I+ EL RL +L+EAQR+++R YDLEM++ G C Sbjct: 280 PKSHYVTPREKLEAASKTIRAELDDRLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCN 339 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS++L+GR GE PPTLF+YIP D+LLF+DESHVT+PQI MY+GD RK L Y Sbjct: 340 GIENYSQHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNY 399 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP++FEEW ++P TI VSATP +ELE + IVEQ++RPTGL+DP +E Sbjct: 400 GFRLPSAMDNRPMKFEEWERIKPATIFVSATPAQYELENSEQ-IVEQVVRPTGLIDPEIE 458 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EI R+L+T LTKRM+EDLT+YL E +++V Y+HS++ T+E Sbjct: 459 IRPVLTQVDDVLSEITKRRDVNERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVE 518 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAI DADKEGFLRS+ SLIQTIGRAAR Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 578 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S+Q AI+ET RRREKQ+ NK+H I P+S I + ID +E+ Sbjct: 579 NLNGKAILYADKITPSMQKAIEETDRRREKQIAFNKEHGITPKSATRSITDKIDTGEVEE 638 Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 N I + ++ S + L KQM + L FE+AA++RD++ Sbjct: 639 DVNDNQPIPSSSGLPDVDIEILRSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLA 698 Query: 793 LKS 795 L++ Sbjct: 699 LRA 701 >gi|332974352|gb|EGK11281.1| excision endonuclease subunit UvrB [Psychrobacter sp. 1501(2011)] Length = 705 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/663 (55%), Positives = 482/663 (72%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M TD+ P+GDQP AI +L+KGI + QLLLGVTGSGKT+TMAKVI QRP I+MA Sbjct: 40 FEMVTDFEPAGDQPQAIEKLVKGIEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK+S+IN+ ID+MR Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I++SSVS IYG+G ESY +M++ + +GD V++ L+ LV QY R Sbjct: 160 SATRALLERRDAIIISSVSSIYGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRN 219 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGT+R+ G+ ++I+P+ E +A R+SMF +++E+IS F PLTG+ +R+V I IY Sbjct: 220 ELDFERGTYRLRGELLDIYPAESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIY 279 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR L A K I+ EL RL +L+EAQR+++R YDLEM++ G C Sbjct: 280 PKSHYVTPREKLEAASKTIRAELDERLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCN 339 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS++L+GR GE PPTLF+YIP D+LLF+DESHVT+PQI MY+GD RK L Y Sbjct: 340 GIENYSQHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNY 399 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP++FEEW ++PTTI VSATP +ELE + IVEQ++RPTGL+DP +E Sbjct: 400 GFRLPSAMDNRPMKFEEWEKIKPTTIFVSATPAQYELEHSEQ-IVEQVVRPTGLIDPEIE 458 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+DV EI + R+L+T LTKRM+EDLT+YL E +++V Y+HS++ T+E Sbjct: 459 IRPVLTQVDDVLSEITKRREVNERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVE 518 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II +LR G DVLVGINLLREGLD+PE LVAI DADKEGFLRS+ SLIQTIGRAAR Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 578 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S++ AI+ET RRREKQ+ N +H I P+S I + ID +E+ Sbjct: 579 NLNGKAILYADKITPSMEKAIEETDRRREKQIAFNLEHGIMPKSATRSITDKIDTGEVEE 638 Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 N +I + ++ S + L KQM + L FE+AA++RD++ Sbjct: 639 DLNDNQAIPSSSGLPDVDIEILRSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLE 698 Query: 793 LKS 795 L++ Sbjct: 699 LRA 701 >gi|300862294|ref|ZP_07108374.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11] gi|300848819|gb|EFK76576.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11] gi|315145264|gb|EFT89280.1| excinuclease ABC subunit B [Enterococcus faecalis TX2141] gi|315161962|gb|EFU05979.1| excinuclease ABC subunit B [Enterococcus faecalis TX0645] Length = 665 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS++KTLE Sbjct: 429 IRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAAR Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + +D LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLLKLEREMKDAAKALDFETAATLRDTILELKAA 664 >gi|238785218|ref|ZP_04629210.1| UvrABC system protein B [Yersinia bercovieri ATCC 43970] gi|238713896|gb|EEQ05916.1| UvrABC system protein B [Yersinia bercovieri ATCC 43970] Length = 680 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 15 FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 75 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 135 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 195 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QR+ QR +DLEM+ G C Sbjct: 255 PKTHYVTPRERILQAMEEIKVELAERRKVLLDNNKLLEEQRIAQRTQFDLEMMNELGYCS 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 315 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ P TI VSATPG +ELE+ G I+EQ++RPTGL+DP +E Sbjct: 375 GFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 435 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLTEHGARVRYLHSDIDTVE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 495 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 554 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ Sbjct: 555 NLNGKAILYGDRITASMEKAISETERRRAKQQAYNEERGIIPQGLNKKIGDLLQLGQPST 614 Query: 737 LLEDAATTNISIDAQQ-LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + D +SL K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 615 RGKGKGRGGKAADPNNYMSLPPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 673 >gi|225630549|ref|YP_002727340.1| excinuclease ABC, subunit B [Wolbachia sp. wRi] gi|225592530|gb|ACN95549.1| excinuclease ABC, subunit B [Wolbachia sp. wRi] Length = 637 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/647 (55%), Positives = 468/647 (72%), Gaps = 17/647 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI L+ G++S ++ Q+LLGVTGSGKTFTMA VI RPA++MA Sbjct: 3 FQIATHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+ Sbjct: 63 HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SLLER D IVV+SVSCIYG+GS ESY MI+ L +G+ + + LS+L QYKR Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++IF SH E+ AWR+S+FG++IEEISE +TG + V I I+ Sbjct: 183 DARFERGYFRVRGDIVDIFLSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NS+Y+TPR L A++ +K+EL RL + +++EA+RLEQR +D+EM+ TTG C+ Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G G+PPPTLFEY+P+D +LFVDESHVT+PQ+ MY G+ RK L +Y Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEEW +RP T+ +SATPG +EL + + +EQ+IRPTGL DP Sbjct: 363 GFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +Q++DV E + +G +L+T LTK+MAE+L EY+ E N++V Y+HS++ LE Sbjct: 423 VKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIAALE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII LR + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD IT S+ A+ ET RRR+KQ EHN HNI P+++ + I + Sbjct: 543 NAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIIPKTIIKPISNTL------- 595 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 Q+ ++++ K + LRKQM A+NL FEEAARI+ Sbjct: 596 ----------QERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAARIK 632 >gi|59711543|ref|YP_204319.1| excinuclease ABC subunit B [Vibrio fischeri ES114] gi|75507048|sp|Q5E6B5|UVRB_VIBF1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|59479644|gb|AAW85431.1| excinulease of nucleotide excision repair, DNA damage recognition component [Vibrio fischeri ES114] Length = 676 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y P+GDQP AI L +G+ + Q LLGVTGSGKTFT+A VI RP I+MA Sbjct: 5 YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR Sbjct: 65 HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+++SVS IYG+G ++Y MI+ L+ GD + Q+++L L + QYKR Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPKAYLSMILHLRRGDIINQRDMLRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RGTFRV G+ ++IFP+ E A R+ MF +++E IS+F PLTG I +++ I Sbjct: 185 DMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK +L +R EL + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GE PPTLF+Y+P+D LL +DESH+T+ QI MY+GD RK L E Sbjct: 305 SGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ L P TI VSATPG +E+E+ G I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD IT S++ AI ET RRREKQ HN+ I PQ++K+ + ++++ L Sbjct: 545 RNLEGKAILYADKITGSMEKAIGETERRREKQQLHNETLGIVPQALKKDVADILE---LG 601 Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786 D + A ++ LS+ ++G ++ ++ L +M+ A +L FE+AA++ Sbjct: 602 DMTKNKRKVVAPKIKLSEVAEEGASYSAMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQV 661 Query: 787 RDEIKRLK 794 RDEI L+ Sbjct: 662 RDEIDNLR 669 >gi|33596640|ref|NP_884283.1| excinuclease ABC subunit B [Bordetella parapertussis 12822] gi|81836644|sp|Q7W8V6|UVRB_BORPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33573341|emb|CAE37325.1| excinuclease ABC subunit B [Bordetella parapertussis] Length = 675 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/662 (55%), Positives = 475/662 (71%), Gaps = 1/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AI L +G+ Q LLGVTGSGKT+TMA +I + RPA+V+A Sbjct: 14 FHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 74 PNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+IFP+ ++A R+++F ++IE + F PLTG+ + + +Y Sbjct: 194 DADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IKEEL+ RL +L +G+L+EAQRLEQR +DLEML+ G C+ Sbjct: 254 PGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD RK TL +Y Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPIVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ A R+L+T LTKRMAEDLT++L E +RVRY+HS++ T+E Sbjct: 433 VRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGI+LLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 493 RVEIIRDLRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AIDET RRR KQ++HN H I + V + + E+ID ++ Sbjct: 553 NLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPA 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 S ++ +K ++ L K M A NL FE+AA RD + LKS Sbjct: 613 GHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLD 672 Query: 801 GL 802 G+ Sbjct: 673 GV 674 >gi|161870204|ref|YP_001599374.1| excinuclease ABC subunit B [Neisseria meningitidis 053442] gi|161595757|gb|ABX73417.1| excinuclease ABC subunit B [Neisseria meningitidis 053442] Length = 716 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 52 FKLHQPFQPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 172 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 351 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G RIL+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERILVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEA+ +RD I+ Sbjct: 651 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEASVLRDRIRG 706 Query: 793 LKSSPYF 799 ++ F Sbjct: 707 IREGLLF 713 >gi|261341364|ref|ZP_05969222.1| excinuclease ABC subunit B [Enterobacter cancerogenus ATCC 35316] gi|288316674|gb|EFC55612.1| excinuclease ABC subunit B [Enterobacter cancerogenus ATCC 35316] Length = 671 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/662 (55%), Positives = 478/662 (72%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG ++ +Y Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHIESVIQRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEDIKAELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + + R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTNIS--------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A T ++ ++L+ K + + L QM A NL FEEAA+IRD++ + Sbjct: 603 IAKTKTKGRGKARPVVEEDTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 662 Query: 793 LK 794 L+ Sbjct: 663 LR 664 >gi|312278810|gb|ADQ63467.1| excinuclease ABC subunit B [Streptococcus thermophilus ND03] Length = 663 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 481/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 10 FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE+++++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + Sbjct: 549 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A +++ +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 609 AEVAEDTVNY--CAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661 >gi|325134430|gb|EGC57075.1| excinuclease ABC, B subunit [Neisseria meningitidis M13399] Length = 699 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPSNTIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 634 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 693 Query: 797 PYF 799 F Sbjct: 694 LLF 696 >gi|325138246|gb|EGC60815.1| excinuclease ABC, B subunit [Neisseria meningitidis ES14902] Length = 675 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ + + GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSSKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ +S ++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 610 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|261381261|ref|ZP_05985834.1| excinuclease ABC subunit B [Neisseria subflava NJ9703] gi|284795734|gb|EFC51081.1| excinuclease ABC subunit B [Neisseria subflava NJ9703] Length = 675 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/663 (54%), Positives = 482/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + +++ + L K M AA +L FEEAA +RD+I+ +K + Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDKIRGIKEN 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|269958372|ref|YP_003328159.1| excinuclease ABC subunit B [Anaplasma centrale str. Israel] gi|269848201|gb|ACZ48845.1| excinuclease ABC subunit B [Anaplasma centrale str. Israel] Length = 652 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/655 (54%), Positives = 477/655 (72%), Gaps = 8/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AI L++GI K Q LLGVTGSGKTFTMA VIE QRPA+++A Sbjct: 4 FKISSEFEPSGDQPGAIDVLVRGISHGVKEQTLLGVTGSGKTFTMASVIERTQRPAVIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH Sbjct: 64 HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVV+SVSCIYG+GS E YS+M + + +G ++ +L LV+ QYKR Sbjct: 124 SATRSLLERRDVIVVASVSCIYGLGSPELYSEMTIPVVLGMKLDMCQLQEKLVELQYKRS 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG+F V GD++ +FPSH ED W++S FG++++ I E P +G ++ IKI+ Sbjct: 184 NRHE-RGSFNVQGDALSVFPSHYEDRVWKISFFGDEVDSIQEVDPKSGVVTLKLDKIKIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVTPRPTL A+ I++EL + +++EA+R+ +R +D+EM+ TG+C+ Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDEYAAYFRQCNKVVEAERILERTRFDIEMMRETGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G+ G+PP TL +Y+P+D+++F+DESH+TIPQI MY GD RKA L + Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTIPQIRAMYNGDRMRKANLINH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPL FEEW +P + VSATPG +EL+Q G+ VEQ+IRPTGLVDP Sbjct: 363 GFRMPSALDNRPLTFEEWEDRKPVVVYVSATPGQYELKQTGGVAVEQLIRPTGLVDPVCI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++SA Q+ DV E +G R+L+T LTK+MAE+LTEY+ E I+V Y+HS+VKTLE Sbjct: 423 VKSADGQIHDVMCESRATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII DLRLG DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RIEIISDLRLGIIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYA+ +T S+Q A++ET RRRE Q HNK+H I P++VK+ + + + Sbjct: 543 NVEGRVILYANVVTGSMQTAMEETNRRREIQRRHNKEHGIVPRTVKKPVQTSLSERV--- 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +S A ++ + L+K+M L A+NL+FE AA IR+ I+RL S Sbjct: 600 GSRKKVSSRAD----AELPASCGVIELQKEMLLCAENLDFERAAEIRNRIRRLAS 650 >gi|170726900|ref|YP_001760926.1| excinuclease ABC subunit B [Shewanella woodyi ATCC 51908] gi|169812247|gb|ACA86831.1| excinuclease ABC, B subunit [Shewanella woodyi ATCC 51908] Length = 671 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/661 (54%), Positives = 477/661 (72%), Gaps = 10/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ Y P+GDQP AI +L+ GI S Q LLGVTGSGKTFT+A VI+ M RP I+MA Sbjct: 6 FQLESQYVPAGDQPKAIKKLVDGIESGLACQTLLGVTGSGKTFTIANVIKEMSRPTIIMA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N I++MR Sbjct: 66 PNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++++SVS IYG+G +SY +M++ L+ GD++ Q+++L L + QY R Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILHRLSELQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGT+RV G+ I+IF + + A RV +F ++IE +S F PLTG ++ + +Y Sbjct: 186 DIELKRGTYRVRGEVIDIFAADSDSNAIRVELFDDEIERLSLFDPLTGHILQRIARTTVY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + A + IKEEL+ R +L +L+E QR+ +R+ YD+EM+ G C Sbjct: 246 PKSHYVTPREKILAASEEIKEELRERKKQLLDNNKLIEEQRITERVQYDIEMMVELGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPTL +Y+P+D LL +DESHVT+PQI MY+GD RK L EY Sbjct: 306 GIENYSRYLSGREEGAGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATP ++E+E+ G I EQ+IRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPANYEIEKSDGEIAEQVIRPTGLLDPELE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ E+ + R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T+E Sbjct: 426 VRPVAIQVDDLLSEVRKRVKVQERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVILYAD IT S+ A+ ET RRR+ Q + N + + P+ V +KI +V+D + E Sbjct: 546 NMNGKVILYADKITDSMAKAMGETERRRKLQHQFNLDNGLVPKGVSKKITDVMD--VGEK 603 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 N + ++ SK K + + +L K+MH A NL FE+AA +RD+++R Sbjct: 604 EYVQNDLASIRDIAESKGDYKVNDVASISHQIDTLEKKMHEHAKNLEFEQAAAVRDQVRR 663 Query: 793 L 793 L Sbjct: 664 L 664 >gi|158321280|ref|YP_001513787.1| excinuclease ABC subunit B [Alkaliphilus oremlandii OhILAs] gi|158141479|gb|ABW19791.1| excinuclease ABC, B subunit [Alkaliphilus oremlandii OhILAs] Length = 659 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/655 (55%), Positives = 482/655 (73%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI L GI+ K Q+LLGVTGSGKTFTMA VIE +Q+P +V+A Sbjct: 4 FQIVSNYRPTGDQPKAIEALANGINKGTKHQVLLGVTGSGKTFTMANVIEKVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVTSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G Y ++V L+ G ++E+L LV QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGDPTEYKNLMVSLRSGMEKSREEVLKQLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD +E+FP+ + A R+ FG++IE I E LTG+ I + + I+ Sbjct: 184 DINFIRGTFRVRGDVVEVFPASSSENAIRLEFFGDEIERILEVNSLTGEIIGVRQHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + A+K I+ EL+ R+ E + E +L+EAQR+ QR YD+EML G CQ Sbjct: 244 PASHYATGADKVENAIKAIEVELEERIKEFKGEEKLIEAQRIGQRTMYDIEMLREVGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y PED L+ +DESHVT+PQI MY GD RK +L Y Sbjct: 304 GIENYSRHLTSREPGSRPYTLMDYFPEDYLIIIDESHVTVPQIRAMYGGDRSRKESLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ L + VSATPG +E+++ Q II EQ+IRPTGL+DP ++ Sbjct: 364 GFRLPSAYDNRPLNFEEFEGLVNQIVYVSATPGPYEMDKTQNII-EQVIRPTGLLDPIID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V+Y+HS++KT+E Sbjct: 423 IRPIKGQIDDLVGEIRKRTEKNQRVLVTTLTKKMSEDLTDYLKEIQIKVKYLHSDIKTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ KVI+YAD IT+S+Q+AIDET RRR+ Q E+N HNI P+S+++ I +VI+ + + Sbjct: 543 NLEGKVIMYADRITRSMQVAIDETNRRRKLQEEYNIAHNIQPKSIEKGIRDVIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A + +LSK++ + L+ L +M AA +L FE AA +RD+I+ L++ Sbjct: 603 EE-VKYGKEASKNNLSKEELEKVLQDLETEMLQAATDLQFERAAELRDKIQSLRA 656 >gi|229548705|ref|ZP_04437430.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200] gi|256957371|ref|ZP_05561542.1| excinuclease ABC [Enterococcus faecalis DS5] gi|257077633|ref|ZP_05571994.1| excinuclease ABC [Enterococcus faecalis JH1] gi|257421018|ref|ZP_05598008.1| excinuclease ABC subunit B [Enterococcus faecalis X98] gi|294781575|ref|ZP_06746912.1| excinuclease ABC, B subunit [Enterococcus faecalis PC1.1] gi|312951869|ref|ZP_07770758.1| excinuclease ABC subunit B [Enterococcus faecalis TX0102] gi|229306171|gb|EEN72167.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200] gi|256947867|gb|EEU64499.1| excinuclease ABC [Enterococcus faecalis DS5] gi|256985663|gb|EEU72965.1| excinuclease ABC [Enterococcus faecalis JH1] gi|257162842|gb|EEU92802.1| excinuclease ABC subunit B [Enterococcus faecalis X98] gi|294451353|gb|EFG19818.1| excinuclease ABC, B subunit [Enterococcus faecalis PC1.1] gi|310630167|gb|EFQ13450.1| excinuclease ABC subunit B [Enterococcus faecalis TX0102] gi|315036140|gb|EFT48072.1| excinuclease ABC subunit B [Enterococcus faecalis TX0027] gi|315148140|gb|EFT92156.1| excinuclease ABC subunit B [Enterococcus faecalis TX4244] gi|315153185|gb|EFT97201.1| excinuclease ABC subunit B [Enterococcus faecalis TX0031] gi|315154903|gb|EFT98919.1| excinuclease ABC subunit B [Enterococcus faecalis TX0043] gi|323479956|gb|ADX79395.1| excinuclease ABC, Beta subunit [Enterococcus faecalis 62] Length = 665 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI+ ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS+VKTLE Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAAR Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + +D LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664 >gi|308389449|gb|ADO31769.1| excinuclease ABC subunit B [Neisseria meningitidis alpha710] Length = 699 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 689 Query: 793 LKSSPYF 799 +K S F Sbjct: 690 IKESLLF 696 >gi|261392389|emb|CAX49931.1| UvrABC system protein B (UvrB protein; excinuclease ABC subunit B) [Neisseria meningitidis 8013] Length = 675 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP+AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPSAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + +++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669 Query: 797 PYFQG 801 F G Sbjct: 670 LLFGG 674 >gi|325208291|gb|ADZ03743.1| excinuclease ABC, B subunit [Neisseria meningitidis NZ-05/33] Length = 699 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 689 Query: 793 LKSSPYF 799 +K S F Sbjct: 690 IKESLLF 696 >gi|228477022|ref|ZP_04061660.1| excinuclease ABC subunit B [Streptococcus salivarius SK126] gi|228251041|gb|EEK10212.1| excinuclease ABC subunit B [Streptococcus salivarius SK126] Length = 663 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 10 FHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + + Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKVNE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A ++D +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 609 AEVAEDTVDYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661 >gi|325204328|gb|ADY99781.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240355] Length = 672 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/674 (54%), Positives = 481/674 (71%), Gaps = 27/674 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLK---------------SLRKQMHLAADNLNFEEAAR 785 + S+ KGK +K L K M AA +L FEEAA Sbjct: 610 DSGK-----------SRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAV 658 Query: 786 IRDEIKRLKSSPYF 799 +RD I+ +K + F Sbjct: 659 LRDRIRGIKENLLF 672 >gi|121308602|dbj|BAF43695.1| excision nuclease subunit B [Vibrio fischeri] Length = 676 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y P+GDQP AI L +G+ + Q LLGVTGSGKTFT+A VI RP I+MA Sbjct: 5 YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR Sbjct: 65 HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+++SVS IYG+G ++Y M++ L+ GD + Q+++L L + QYKR Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RGTFRV G+ ++IFP+ E A R+ MF +++E IS+F PLTG I +++ I Sbjct: 185 DMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIIAKDMPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK +L +R EL + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GE PPTLF+Y+P+D LL +DESH+T+ QI MY+GD RK L E Sbjct: 305 SGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ L P TI VSATPG +E+E+ G I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD IT S++ AI ET RRREKQ HN+ I PQ++K+ + ++++ L Sbjct: 545 RNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILE---LG 601 Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786 D + A ++ LS+ ++G ++ ++ L +M+ A +L FE+AA++ Sbjct: 602 DMTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQV 661 Query: 787 RDEIKRLK 794 RDEI L+ Sbjct: 662 RDEIDNLR 669 >gi|56421621|ref|YP_148939.1| excinuclease ABC subunit B [Geobacillus kaustophilus HTA426] gi|81819619|sp|Q5KVB5|UVRB_GEOKA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56381463|dbj|BAD77371.1| excinuclease ABC subunit B [Geobacillus kaustophilus HTA426] Length = 658 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + +++L +M AA L+FE AA++RD I LK+ Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|258593070|emb|CBE69381.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [NC10 bacterium 'Dutch sediment'] Length = 674 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/655 (55%), Positives = 487/655 (74%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ DY P GDQP AI +L++G Q+LLGVTGSGKTFTMA VI A++RP +++A Sbjct: 4 FKLVCDYQPKGDQPQAIRRLVEGCLQGRPHQVLLGVTGSGKTFTMANVIAAIERPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFPHNAVEYFVSYYDYYQPEAY+P TDT+IEK+S IN+QID++RH Sbjct: 64 HNKTLAAQLFEEFKAFFPHNAVEYFVSYYDYYQPEAYLPVTDTFIEKDSMINDQIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D ++V+SVSCIYG+GS E+Y M+V L+ G +++ +L LV+ QY+R Sbjct: 124 SATRSLLERRDVVIVASVSCIYGLGSPEAYYGMMVFLERGGRCDREAMLRKLVEIQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV GD +EIFP++ D RV +FG+++E + E P+TG++I+ + + IY Sbjct: 184 EYDLHRGTFRVRGDVVEIFPAY-ADTVVRVELFGDEVEGLWEIDPVTGERIQMLYRVPIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP A I EEL ++ EK G+LLE QRL+QR +DLEM+ G C+ Sbjct: 243 PATHYVTPHDRREAAFAAILEELNEQVTSFEKAGKLLEVQRLKQRTCFDLEMMREVGVCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE PPTL +Y+P D+L+ +DESH TIPQI GMY GD RK TL EY Sbjct: 303 GIENYSRHLSGRATGEAPPTLMDYLPRDALVIIDESHQTIPQIRGMYHGDRSRKETLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP FEE+ I VSATPG +EL + +G IVEQIIRPTGL+DP ++ Sbjct: 363 GFRLPSAMDNRPFTFEEFERAVGQIIYVSATPGPYELAKVKGEIVEQIIRPTGLIDPEIQ 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ E+ +G R+L+T LTKRMAE+LTEYL E I+VRY+HS++ TL+ Sbjct: 423 VRPIRGQIDDLIGEVRAITARGHRVLITTLTKRMAENLTEYLAEVGIKVRYLHSDIDTLK 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RNEIIRELRLGRFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSSGSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +V+LYADTIT S++ A++ET RRRE+Q+ +N+++ I P+S+K+ I +V+ + +D Sbjct: 543 NVEGRVVLYADTITDSMRRAMEETERRRERQIAYNREYGITPESIKKSISDVLSSVTEKD 602 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T + D +++ +++++ A+++ L K+M AA L FE AA +RD I+ ++ Sbjct: 603 YYTVPAAPDVEEVGRVTQEELPAYIEQLEKEMRAAAKRLEFERAAELRDRIREME 657 >gi|93279489|pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX gi|93279490|pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX Length = 658 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + +++L +M AA L+FE AA++RD I LK+ Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|317490182|ref|ZP_07948670.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA] gi|316910676|gb|EFV32297.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA] Length = 716 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 487/656 (74%), Gaps = 2/656 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ + Y P+GDQP AI +L G+ + Q LLGVTGSGKTFTMAKVIEA+Q+P +V Sbjct: 24 TPFKVVSPYEPAGDQPQAIEKLATGVKEGLRYQNLLGVTGSGKTFTMAKVIEAVQKPTLV 83 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQL SE K FFP NAV YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++ Sbjct: 84 MAPNKTLAAQLASELKEFFPDNAVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 143 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R DCIVV+SVSCIYGIGS Y+ M V + +++ +++ L+ QY Sbjct: 144 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKDMDRDQVIHELIDIQYD 203 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD++++FP + D R+ +G++IE I+E +TG+ + E + Sbjct: 204 RNDYEQKRGTFRVRGDALDVFPPYA-DHPIRIEFWGDEIESITEIDNVTGEVLSEFEALP 262 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ SHYVT RP ++ A+ I++EL+ RL + ++EG+LLEAQRLE R+ YDLEMLET Sbjct: 263 IWPASHYVTARPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRVNYDLEMLETMNF 322 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR++ GR PGEPP TL +Y P+D +DESHVT+PQI GM+ GD RK TLA Sbjct: 323 CSGIENYSRHMDGREPGEPPYTLIDYFPKDFFCIIDESHVTVPQIRGMHEGDRSRKITLA 382 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPSC+DNRPLRF+E+ P + VSATPG +E + Q VEQIIRPTGL+DP Sbjct: 383 EHGFRLPSCLDNRPLRFDEFEDRIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 441 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + +R + +Q++D+ DE A + R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T Sbjct: 442 IIVRGSASQIDDIIDESKERAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 501 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER+EI+RDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRA Sbjct: 502 LERVEILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 561 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ +VI+YAD +T S+ LAIDET RRR Q+++N++H I PQ++++ I +++ + Sbjct: 562 ARNVSGQVIMYADKMTDSMALAIDETKRRRAIQMKYNEEHGIEPQTIRKAINDIMSYVTD 621 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E TT ++ + LS+++ ++S+ M A+ +++FEEAAR+RD++ +L+ Sbjct: 622 EMGGTTAEQVNKELAELSREEVLRIIQSMEDDMASASQSMDFEEAARLRDQVVKLR 677 >gi|325136165|gb|EGC58773.1| excinuclease ABC, B subunit [Neisseria meningitidis M0579] Length = 716 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 52 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 172 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 291 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 351 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 651 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 706 Query: 793 LKSSPYF 799 +K S F Sbjct: 707 IKESLLF 713 >gi|93005567|ref|YP_580004.1| excinuclease ABC subunit B [Psychrobacter cryohalolentis K5] gi|92393245|gb|ABE74520.1| Excinuclease ABC subunit B [Psychrobacter cryohalolentis K5] Length = 662 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/665 (55%), Positives = 481/665 (72%), Gaps = 18/665 (2%) Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M T++ P+GDQP AI +L+ GI++ QLLLGVTGSGKT+TMAKVI QRP I+MA N Sbjct: 1 MVTEFEPAGDQPQAIKKLVNGINAGMDEQLLLGVTGSGKTYTMAKVISETQRPTIIMAHN 60 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV +DT+IEK+S+IN+ ID+MR SA Sbjct: 61 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRLSA 120 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER D I+V+SVSCIYG+G ESY +M++ + +GD +++ + LV+ QY R ++ Sbjct: 121 TRALLERRDAIIVASVSCIYGLGDPESYLKMLLHVVVGDKIDRTATIKRLVEMQYTRNEL 180 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 RGT+R+ G+ ++I+P+ E +A RV +F N++E+I+ F PLTG+ +R V I IY Sbjct: 181 DFGRGTYRLRGELLDIYPAESEQLAVRVHLFDNEVEKITWFDPLTGKTVRTVPRITIYPK 240 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 SHYVTPR L A I+ EL+ RL + +L+EAQRL++R YDLEM++ G C I Sbjct: 241 SHYVTPRNKLEAASHTIRAELEPRLEYFRENNKLIEAQRLKERTQYDLEMIQQLGYCNGI 300 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYS++L+GR GE PPTLF+YIPED+LLF+DESHVT+ QI MY+GD RK L YGF Sbjct: 301 ENYSQHLSGRPSGEAPPTLFDYIPEDALLFLDESHVTVSQIGAMYKGDRSRKENLVNYGF 360 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPS M+NRP++FEEW ++P TI VSATP +ELE + +VEQ++RPTGL+DP +EIR Sbjct: 361 RLPSAMNNRPMKFEEWERIKPKTIYVSATPALYELEHSEQ-VVEQVVRPTGLIDPEIEIR 419 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 TQV+DV EI ++ R+L+T LTKRM+EDLT YL E +++V Y+HS++ TLER+ Sbjct: 420 PVLTQVDDVLSEITKRREKDERVLITTLTKRMSEDLTSYLKEYDVKVAYLHSDIDTLERM 479 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 +II +LR G DVLVGINLLREGLD+PE LVAI DADKEGFLRS+ +LIQTIGRAAR++ Sbjct: 480 QIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERALIQTIGRAARHI 539 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA- 741 N K ILYAD IT S+Q AIDET RRREKQ+ N +HNI P + I + ID DA Sbjct: 540 NGKAILYADRITNSMQKAIDETDRRREKQVAFNLEHNITPTGARRSITDKIDTGDDHDAN 599 Query: 742 -----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +ISI L+K+ + L+ L KQM + +L FE+AA+ RD++ Sbjct: 600 DNQMIPIKSNLPDVDISILRSPDLLAKEINR--LEKLMKQM---SRDLKFEDAAKTRDKV 654 Query: 791 KRLKS 795 LK+ Sbjct: 655 LELKA 659 >gi|332184269|gb|AEE26523.1| Excinuclease ABC subunit B [Francisella cf. novicida 3523] Length = 668 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L++G+++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPKAIKSLVEGVNNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLIVA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +KI+++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISIIDSLTSKKIKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEEIKAELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RKA L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKANLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q VEQ+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + RIL+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINRAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS++ A+DET RRR+ Q E+NKKHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMKKAMDETLRRRQLQDEYNKKHNITPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEAAKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|307269815|ref|ZP_07551145.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248] gi|306513925|gb|EFM82527.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248] Length = 665 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 473/656 (72%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI+ ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS+VKTLE Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAAR Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + +D LS+++ L L ++M AA L+FE AA +RD I LK + Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKDA 664 >gi|197335978|ref|YP_002155699.1| excinuclease ABC, B subunit [Vibrio fischeri MJ11] gi|197317468|gb|ACH66915.1| excinuclease ABC, B subunit [Vibrio fischeri MJ11] Length = 676 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y P+GDQP AI L +G+ + Q LLGVTGSGKTFT+A VI RP I+MA Sbjct: 5 YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR Sbjct: 65 HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+++SVS IYG+G ++Y M++ L+ GD + Q+++L L + QYKR Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RGTFRV G+ ++IFP+ E A R+ MF +++E IS+F PLTG I +++ I Sbjct: 185 DMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK +L +R EL + +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GE PPTLF+Y+P+D LL +DESH+T+ QI MY+GD RK L E Sbjct: 305 SGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ L P TI VSATPG +E+E+ G I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T+ Sbjct: 425 EVRPVTTQVDDLLSEIRIRTKSNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD IT S++ AI ET RRREKQ HN+ I PQ++K+ + ++++ L Sbjct: 545 RNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILE---LG 601 Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786 D + A ++ LS+ ++G ++ ++ L +M+ A +L FE+AA++ Sbjct: 602 DMTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQV 661 Query: 787 RDEIKRLK 794 RDEI L+ Sbjct: 662 RDEIDNLR 669 >gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [Enterococcus faecalis V583] gi|227554877|ref|ZP_03984924.1| excinuclease ABC subunit B [Enterococcus faecalis HH22] gi|257418369|ref|ZP_05595363.1| excinuclease ABC subunit B [Enterococcus faecalis T11] gi|81838991|sp|Q837R9|UVRB_ENTFA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|29342815|gb|AAO80579.1| excinuclease ABC, subunit B [Enterococcus faecalis V583] gi|227175990|gb|EEI56962.1| excinuclease ABC subunit B [Enterococcus faecalis HH22] gi|257160197|gb|EEU90157.1| excinuclease ABC subunit B [Enterococcus faecalis T11] gi|315166946|gb|EFU10963.1| excinuclease ABC subunit B [Enterococcus faecalis TX1341] gi|315573458|gb|EFU85649.1| excinuclease ABC subunit B [Enterococcus faecalis TX0309B] gi|315581419|gb|EFU93610.1| excinuclease ABC subunit B [Enterococcus faecalis TX0309A] Length = 665 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI+ ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS++KTLE Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAAR Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + +D LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 609 KDETVVQLDKSYKDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664 >gi|152969361|ref|YP_001334470.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262041140|ref|ZP_06014357.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330014492|ref|ZP_08307932.1| excinuclease ABC, B subunit [Klebsiella sp. MS 92-3] gi|189037970|sp|A6T6L9|UVRB_KLEP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|150954210|gb|ABR76240.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041514|gb|EEW42568.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533019|gb|EGF59793.1| excinuclease ABC, B subunit [Klebsiella sp. MS 92-3] Length = 673 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/664 (55%), Positives = 477/664 (71%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I++FP+ +D+A R+ +F ++E +S F PLTG V IY Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++EL++ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L + Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQ--LGQG 602 Query: 741 AATTNI-------SIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T +++ LS ++ K + + L QM A NL FEEAA+IRD++ Sbjct: 603 LAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|227517725|ref|ZP_03947774.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104] gi|229546598|ref|ZP_04435323.1| excinuclease ABC subunit B [Enterococcus faecalis TX1322] gi|255971219|ref|ZP_05421805.1| excinuclease ABC subunit B [Enterococcus faecalis T1] gi|255973842|ref|ZP_05424428.1| excinuclease ABC subunit B [Enterococcus faecalis T2] gi|256617648|ref|ZP_05474494.1| excinuclease ABC [Enterococcus faecalis ATCC 4200] gi|256761529|ref|ZP_05502109.1| excinuclease ABC [Enterococcus faecalis T3] gi|256854373|ref|ZP_05559737.1| excinuclease ABC subunit B [Enterococcus faecalis T8] gi|257083684|ref|ZP_05578045.1| excinuclease ABC [Enterococcus faecalis Fly1] gi|257086119|ref|ZP_05580480.1| excinuclease ABC [Enterococcus faecalis D6] gi|257089190|ref|ZP_05583551.1| excinuclease ABC subunit B [Enterococcus faecalis CH188] gi|257415332|ref|ZP_05592326.1| excinuclease ABC [Enterococcus faecalis AR01/DG] gi|307276260|ref|ZP_07557388.1| excinuclease ABC subunit B [Enterococcus faecalis TX2134] gi|307284475|ref|ZP_07564637.1| excinuclease ABC subunit B [Enterococcus faecalis TX0860] gi|307289544|ref|ZP_07569489.1| excinuclease ABC subunit B [Enterococcus faecalis TX0109] gi|307296216|ref|ZP_07576044.1| excinuclease ABC subunit B [Enterococcus faecalis TX0411] gi|312900357|ref|ZP_07759668.1| excinuclease ABC subunit B [Enterococcus faecalis TX0470] gi|312904216|ref|ZP_07763378.1| excinuclease ABC subunit B [Enterococcus faecalis TX0635] gi|227074830|gb|EEI12793.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104] gi|229308288|gb|EEN74275.1| excinuclease ABC subunit B [Enterococcus faecalis TX1322] gi|255962237|gb|EET94713.1| excinuclease ABC subunit B [Enterococcus faecalis T1] gi|255966714|gb|EET97336.1| excinuclease ABC subunit B [Enterococcus faecalis T2] gi|256597175|gb|EEU16351.1| excinuclease ABC [Enterococcus faecalis ATCC 4200] gi|256682780|gb|EEU22475.1| excinuclease ABC [Enterococcus faecalis T3] gi|256709933|gb|EEU24977.1| excinuclease ABC subunit B [Enterococcus faecalis T8] gi|256991714|gb|EEU79016.1| excinuclease ABC [Enterococcus faecalis Fly1] gi|256994149|gb|EEU81451.1| excinuclease ABC [Enterococcus faecalis D6] gi|256998002|gb|EEU84522.1| excinuclease ABC subunit B [Enterococcus faecalis CH188] gi|257157160|gb|EEU87120.1| excinuclease ABC [Enterococcus faecalis ARO1/DG] gi|295114021|emb|CBL32658.1| Excinuclease ABC subunit B [Enterococcus sp. 7L76] gi|306496090|gb|EFM65672.1| excinuclease ABC subunit B [Enterococcus faecalis TX0411] gi|306499505|gb|EFM68877.1| excinuclease ABC subunit B [Enterococcus faecalis TX0109] gi|306503152|gb|EFM72406.1| excinuclease ABC subunit B [Enterococcus faecalis TX0860] gi|306507060|gb|EFM76202.1| excinuclease ABC subunit B [Enterococcus faecalis TX2134] gi|310632312|gb|EFQ15595.1| excinuclease ABC subunit B [Enterococcus faecalis TX0635] gi|311292545|gb|EFQ71101.1| excinuclease ABC subunit B [Enterococcus faecalis TX0470] gi|315025740|gb|EFT37672.1| excinuclease ABC subunit B [Enterococcus faecalis TX2137] gi|315029876|gb|EFT41808.1| excinuclease ABC subunit B [Enterococcus faecalis TX4000] gi|315031473|gb|EFT43405.1| excinuclease ABC subunit B [Enterococcus faecalis TX0017] gi|315151539|gb|EFT95555.1| excinuclease ABC subunit B [Enterococcus faecalis TX0012] gi|315159997|gb|EFU04014.1| excinuclease ABC subunit B [Enterococcus faecalis TX0312] gi|315164647|gb|EFU08664.1| excinuclease ABC subunit B [Enterococcus faecalis TX1302] gi|315173029|gb|EFU17046.1| excinuclease ABC subunit B [Enterococcus faecalis TX1346] gi|315578043|gb|EFU90234.1| excinuclease ABC subunit B [Enterococcus faecalis TX0630] gi|327534350|gb|AEA93184.1| excision endonuclease subunit UvrB [Enterococcus faecalis OG1RF] Length = 665 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI+ ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS++KTLE Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAAR Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + +D LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664 >gi|149190377|ref|ZP_01868649.1| excinuclease ABC subunit B [Vibrio shilonii AK1] gi|148835756|gb|EDL52721.1| excinuclease ABC subunit B [Vibrio shilonii AK1] Length = 676 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/668 (54%), Positives = 478/668 (71%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AIAQL+ G+ S Q LLGVTGSGKTFT+A VI QRPAI++A Sbjct: 5 FELVSDYQPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTLANVIAQSQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKGFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ + G ++Q+++L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHVTRGAVIDQRDILLRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RG FRV G+ I+IFP+ + A R+ MF ++I+ IS F PLTG R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQEAVRLEMFDDEIDCISLFDPLTGVITERDIARYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL R L+ +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELAARQTYLKDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+F+E+ + P TI VSATP ++ELE+ G + +Q++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPLKFDEFEMIAPQTIFVSATPSTYELEKSDGDVADQVVRPTGLLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ E+ A R+L+T LTKRMAEDLTEYL E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEVRARAAIDERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERTEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILY D IT S+Q AI+ET RRREKQ +N ++ + P ++K I ++++ + Sbjct: 545 RNLKGKAILYGDRITNSMQKAINETNRRREKQHAYNVENGMVPMALKRNIKDIME---IG 601 Query: 740 DAATTNISIDAQQLSLSK--KKGKAHLK-----------SLRKQMHLAADNLNFEEAARI 786 A +Q+ LSK + +A++ L +M+ A NL FE AA Sbjct: 602 SVAKGGKPKKGKQVPLSKVAEPSQAYVALSPQDLEKQILKLEAEMYQHAQNLEFELAAEK 661 Query: 787 RDEIKRLK 794 RDEI++L+ Sbjct: 662 RDEIEKLR 669 >gi|288554107|ref|YP_003426042.1| excinuclease ABC subunit B [Bacillus pseudofirmus OF4] gi|288545267|gb|ADC49150.1| excinuclease ABC subunit B (DinA) SOS protein [Bacillus pseudofirmus OF4] Length = 658 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/655 (55%), Positives = 476/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQPAAI +++ GI +K Q LLG TG+GKTFT++ VI+ + +P +++A Sbjct: 5 FELNSPYQPDGDQPAAIKEIVAGIKEGKKHQTLLGATGTGKTFTISNVIQEVNKPTLIIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SINE+ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINEEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS E Y ++V L+ G +++ LL +LV QY R Sbjct: 125 SATSALFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEMDRNALLRNLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ++ RV FG++I+ ++E LTG+ + I+ Sbjct: 185 DVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRMTEVDALTGEIKGERNHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A+ I+ EL+ +L ++ +EG+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREAKLKKAIANIEVELEEQLKKMHEEGKLLEAQRLEQRTRYDLEMMAEMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL ++ PED LL VDESHVT+PQ+ GMY GD RK L + Sbjct: 305 GIENYSRHLTLREAGATPYTLLDFFPEDFLLIVDESHVTLPQVRGMYNGDRARKEVLVNH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ ++ VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLKFDEFEKKISQSVYVSATPGPYELEHTPK-MVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+L+T LTK+M+EDLT+YL E I+VRY+HSE+KTLE Sbjct: 424 VRPIEGQIDDMIGEINARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR LR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 484 RIEIIRQLRMGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +TKS+Q+AIDET RRR Q E+N+KH I P+++++KI EVI ++ D Sbjct: 544 NSNGHVIMYADKMTKSMQIAIDETARRRSIQEEYNEKHGITPKTIQKKIPEVIQATIVSD 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A + LSKK +A ++ + K+M AA LNFE AA +RD + LK+ Sbjct: 604 EDGEATA--APKTKLSKKDKEAMIERMEKEMKDAARELNFERAAELRDLLLELKA 656 >gi|332654162|ref|ZP_08419906.1| excinuclease ABC subunit B [Ruminococcaceae bacterium D16] gi|332517248|gb|EGJ46853.1| excinuclease ABC subunit B [Ruminococcaceae bacterium D16] Length = 656 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/658 (55%), Positives = 479/658 (72%), Gaps = 9/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI L +GI Q LLGVTGSGKTFTMAK+IE +QRP +V+A Sbjct: 4 FEVVSEYTPSGDQPQAIEALSQGIEMGLDEQTLLGVTGSGKTFTMAKIIEQVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P TDT+IEK+S+INE+IDR+R Sbjct: 64 HNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPHTDTFIEKDSAINEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLER D IVVSSVSCIYG+G E +++M+V L++GD +E+ E L LV +Y+R Sbjct: 124 SATASLLERRDVIVVSSVSCIYGLGEPEDFAKMMVSLRVGDILERDEFLKRLVSIRYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R FRV GD++E++P++ +D A RV FG++I+ ISE +TG IR + I I+ Sbjct: 184 DIAFERNMFRVRGDTVEVWPAYWKDTAIRVEFFGDEIDRISEINVVTGSPIRKLSHIPIW 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ ++ A++ I +EL+ R+ EKEG+L+EAQR++QR YD+EM++ G C Sbjct: 244 PATHYVTPKEKMDAAVQEIYKELEERVAYFEKEGKLIEAQRIKQRTMYDVEMMQELGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + GR G PP TL +Y P+D +LF+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRVIEGRPVGSPPHTLLDYFPKDFVLFIDESHVTLPQVRAMYNGDRARKNTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ I VSATPG +E + G IVEQ+IRPTGL+DP +E Sbjct: 364 GFRLPCAYDNRPLKFEEFEKRLNQVIYVSATPGEYERTRS-GQIVEQVIRPTGLLDPKIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+L+T LTK+MAEDLT+YL I+VRYMH +V T+E Sbjct: 423 VRPVEGQIDDLIGEINARTARKERVLVTTLTKKMAEDLTDYLQNNGIKVRYMHHDVDTME 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N V++YADTIT S++ A+DET RRR+KQ +NK+H I P++V + + + LLE Sbjct: 543 NAEGMVVMYADTITPSMRRAMDETERRRQKQDAYNKEHGIVPKTVIKSVRD-----LLEI 597 Query: 741 AATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A + +Q ++SK++ A + L K M AA L FE AA +RD+I L+ Sbjct: 598 SAPADEPSQTRQGRVKAMSKQEKAAEIARLEKAMKEAAKMLEFELAATLRDQIIELRG 655 >gi|206602984|gb|EDZ39464.1| Exinuclease ABC, B subunit (UvrB) [Leptospirillum sp. Group II '5-way CG'] Length = 701 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/657 (55%), Positives = 471/657 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQ AI L +GI + Q LLGVTGSGKTFTMA VI+ +Q+P++++A Sbjct: 25 FRLASGFSPSGDQERAIDVLSEGILAGITHQTLLGVTGSGKTFTMANVIQRVQKPSLILA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S++N+ IDRMRH Sbjct: 85 PNKTLAAQLYREFKAFFPDNRVEYFVSYYDYYQPEAYIPSTDTYIEKDSAVNDLIDRMRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLER D IVV+SVSCIYG+GS ESY +M + L+ G ++ +++L+ LV QY+R Sbjct: 145 SATSSLLERRDTIVVASVSCIYGLGSPESYQKMHLYLERGQALTREKLIERLVTIQYQRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RGTFRV GD ++I P+ ED A RV +FG++IE I E PLTG ++ + ++ IY Sbjct: 205 DIELSRGTFRVRGDVVDIIPASYEDRAIRVELFGDEIERIREMDPLTGHELAVIPSVIIY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV P L AM I+EEL R+ E + G+LLEAQR+EQR +DLEM+ G C Sbjct: 265 PGTHYVLPPDELERAMAGIEEELHARIREFRQSGKLLEAQRIEQRTLFDLEMIREIGYCH 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR G+PPPTLF+Y P+D L+ VDESHV +PQ+ GMY GD+ RK +L EY Sbjct: 325 GIENYSRHLSGRKAGDPPPTLFDYFPKDFLVIVDESHVAVPQVGGMYHGDYSRKKSLVEY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ ++ VSATPG +EL G+ VEQIIRPTGL DP +E Sbjct: 385 GFRLPSAFDNRPLKFFEFEKTACQSLYVSATPGPYELRMSNGVTVEQIIRPTGLCDPEIE 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A QV+ + EI + QG R+L+T LTK+MAE+LTEYL ER +RVRY+HSE+ TLE Sbjct: 445 VVPATHQVDHLLGEIRITVGQGDRVLVTTLTKKMAENLTEYLEERQVRVRYLHSEIDTLE 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLR G+FDVLVGINLLREGLD+PE LVAILDAD+EGFLRS+ SLIQT GRAAR Sbjct: 505 RMEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSRRSLIQTAGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VI Y D +T S++ AI ET RRRE Q+ +N + I P+ ++++I E + + D Sbjct: 565 NVRGRVIFYGDKVTGSMEEAIQETRRRREIQIAYNLERGITPRGIRKEIPESLYAVSEGD 624 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 ++ + + L K+ +RK M AA +L FE+AA RD ++ P Sbjct: 625 YVDVSLVEEVRGRILEKEGDALPDGEIRKLMEKAASDLEFEKAAYYRDILRARGRDP 681 >gi|319639507|ref|ZP_07994256.1| UvrABC system protein B [Neisseria mucosa C102] gi|317399273|gb|EFV79945.1| UvrABC system protein B [Neisseria mucosa C102] Length = 675 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/663 (54%), Positives = 482/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRETVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT+GRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTMGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT SI+ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSIKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 610 DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEN 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|206577462|ref|YP_002239587.1| excinuclease ABC, B subunit [Klebsiella pneumoniae 342] gi|288936430|ref|YP_003440489.1| excinuclease ABC subunit B [Klebsiella variicola At-22] gi|290510514|ref|ZP_06549884.1| excinuclease ABC, B subunit [Klebsiella sp. 1_1_55] gi|226698336|sp|B5XYX2|UVRB_KLEP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|206566520|gb|ACI08296.1| excinuclease ABC, B subunit [Klebsiella pneumoniae 342] gi|288891139|gb|ADC59457.1| excinuclease ABC, B subunit [Klebsiella variicola At-22] gi|289777230|gb|EFD85228.1| excinuclease ABC, B subunit [Klebsiella sp. 1_1_55] Length = 673 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/664 (55%), Positives = 477/664 (71%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I++FP+ +D+A R+ +F ++E +S F PLTG V IY Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++EL++ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L + Sbjct: 545 NINGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQ--LGQG 602 Query: 741 AATTNI-------SIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T +++ LS ++ K + + L QM A NL FEEAA+IRD++ Sbjct: 603 LAKTKAKGRGKAKAVEPAGLSAVEMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|257792254|ref|YP_003182860.1| excinuclease ABC, B subunit [Eggerthella lenta DSM 2243] gi|325833634|ref|ZP_08166083.1| excinuclease ABC, B subunit [Eggerthella sp. HGA1] gi|257476151|gb|ACV56471.1| excinuclease ABC, B subunit [Eggerthella lenta DSM 2243] gi|325485558|gb|EGC88027.1| excinuclease ABC, B subunit [Eggerthella sp. HGA1] Length = 716 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 486/656 (74%), Gaps = 2/656 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F+ + Y P+GDQP AI +L G+ + Q LLGVTGSGKTFTMAKVIEA+Q+P +V Sbjct: 24 TPFKAVSPYEPAGDQPQAIEKLATGVKEGLRYQNLLGVTGSGKTFTMAKVIEAVQKPTLV 83 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQL SE K FFP NAV YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++ Sbjct: 84 MAPNKTLAAQLASELKEFFPDNAVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 143 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R DCIVV+SVSCIYGIGS Y+ M V + +++ +++ L+ QY Sbjct: 144 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKDMDRDQVIHELIDIQYD 203 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD++++FP + D R+ +G++IE I+E +TG+ + E + Sbjct: 204 RNDYEQKRGTFRVRGDALDVFPPYA-DHPIRIEFWGDEIESITEIDNVTGEVLSEFEALP 262 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ SHYVT RP ++ A+ I++EL+ RL + ++EG+LLEAQRLE R+ YDLEMLET Sbjct: 263 IWPASHYVTARPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRVNYDLEMLETMNF 322 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR++ GR PGEPP TL +Y P+D +DESHVT+PQI GM+ GD RK TLA Sbjct: 323 CSGIENYSRHMDGREPGEPPYTLIDYFPKDFFCIIDESHVTVPQIRGMHEGDRSRKITLA 382 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPSC+DNRPLRF+E+ P + VSATPG +E + Q VEQIIRPTGL+DP Sbjct: 383 EHGFRLPSCLDNRPLRFDEFEDRIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 441 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + +R + +Q++D+ DE A + R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T Sbjct: 442 IIVRGSASQIDDIIDESKERAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 501 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER+EI+RDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRA Sbjct: 502 LERVEILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 561 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ +VI+YAD +T S+ LAIDET RRR Q+++N++H I PQ++++ I +++ + Sbjct: 562 ARNVSGQVIMYADKMTDSMALAIDETKRRRAIQMKYNEEHGIEPQTIRKAINDIMSYVTD 621 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E TT ++ + LS+++ ++S+ M A+ +++FEEAAR+RD++ +L+ Sbjct: 622 EMGGTTAEQVNKELAELSREEVLRIIQSMEDDMASASQSMDFEEAARLRDQVVKLR 677 >gi|304316126|ref|YP_003851271.1| excinuclease ABC subunit B [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777628|gb|ADL68187.1| excinuclease ABC, B subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 661 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/658 (54%), Positives = 488/658 (74%), Gaps = 11/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L +G++ K Q LLGVTGSGKT+TMA +I+ + +P +V+A Sbjct: 4 FKLVSDYRPTGDQPEAIKKLTEGVNMGLKCQTLLGVTGSGKTYTMANIIKNVNKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y +++ L+ G ++ E+L LV Y+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYEDLMLSLRPGMVKDRDEILKKLVDIHYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RG FRV GD IE+FP+ + A R+ +FG++I+ I+E LTG+ + + I+ Sbjct: 184 DINFVRGKFRVRGDVIEVFPASSSEKAIRIELFGDEIDRITEIDVLTGEIVGERNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L A++ I++EL+ R EL+ +G++LEA+RL+QR YD+EML+ G C Sbjct: 244 PASHYATSKEKLKRAIESIEKELEERYKELKDQGKILEAERLKQRTNYDIEMLQEVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR G PP TL +Y P+D L+F+DESHVTIPQI GMY GD RK +L ++ Sbjct: 304 GIENYSRHISGRPAGSPPYTLLDYFPDDFLMFIDESHVTIPQIRGMYNGDRARKESLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATPG +ELE + +VEQIIRPTGLVDP V+ Sbjct: 364 GFRLPSAFDNRPLKFEEFEERINQLICVSATPGPYELEHSER-VVEQIIRPTGLVDPEVK 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + QV+D+ EI + ++G R+L+T LTK+MAEDLT+Y + ++V+Y+HS+++T+E Sbjct: 423 VKPVKGQVDDLLSEIKMTVEKGYRVLVTTLTKKMAEDLTDYFNDMGVKVKYLHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N +VI+YADT+T+S++ AI+ET RRR Q+++NKKH I P+++ + I +VI+ + E Sbjct: 543 NAEGRVIMYADTVTESMKNAINETNRRRAIQMDYNKKHGITPKTIVKGIRDVIEATKVAE 602 Query: 740 DAATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D +I +A+ ++S+ K + L K+M AA L FE+AA++RD I L+ Sbjct: 603 DKVPYSIK-EAEVVDRVSIEK-----MISELEKEMRKAAKELEFEKAAKLRDRIFELQ 654 >gi|295091037|emb|CBK77144.1| excinuclease ABC, B subunit [Clostridium cf. saccharolyticum K10] Length = 663 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 482/656 (73%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL+KG + + LLGVTGSGKTFTMA VI+A+ +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIAQLVKGFQEGNQFETLLGVTGSGKTFTMANVIQALNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALSERSDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD +EI+P++ A+R+ FG++++ I+E LTG+ + + I+ Sbjct: 184 DMDFKRGSFRVRGDVLEIYPAYSGGDAYRIEFFGDEVDRITEIDTLTGEIKAQLGHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A K I EELK ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVIPKEKMELAAKNILEELKEQVAWFKSEDKLLEAQRILERTNFDVEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PED L+ +DESH+T+PQI GMY GD RK TL EY Sbjct: 304 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIIDESHITLPQIRGMYAGDRSRKKTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DPP++ Sbjct: 364 GFRLPSALDNRPLNFEEFESKIDQMLFVSATPSDYE-EAHEMLRAEQIIRPTGLLDPPID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++ ++L+T LTKRMAEDLT+Y+ + IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVSEVNREIEKKGKVLITTLTKRMAEDLTDYMRDAGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S+++AI+ET RRR+ Q +N++H+I P ++K+ + ++I + Sbjct: 543 NSEGHVIMYADTITDSMRVAIEETKRRRQIQQAYNEEHHITPTTIKKAVRDLISISQAAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793 T ++ D + S+ +K+ K +K L K+MH AA LNFEEAA +RD EIK++ Sbjct: 603 GVTNEVTKDPE--SMDEKELKKLVKELTKKMHQAAAELNFEEAAILRDRMVEIKKM 656 >gi|297531342|ref|YP_003672617.1| excinuclease ABC subunit B [Geobacillus sp. C56-T3] gi|297254594|gb|ADI28040.1| excinuclease ABC, B subunit [Geobacillus sp. C56-T3] Length = 658 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + ++ L +M AA L+FE AA++RD I LK+ Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|261420530|ref|YP_003254212.1| excinuclease ABC subunit B [Geobacillus sp. Y412MC61] gi|319768199|ref|YP_004133700.1| excinuclease ABC subunit B [Geobacillus sp. Y412MC52] gi|261376987|gb|ACX79730.1| excinuclease ABC, B subunit [Geobacillus sp. Y412MC61] gi|317113065|gb|ADU95557.1| excinuclease ABC, B subunit [Geobacillus sp. Y412MC52] Length = 658 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/655 (56%), Positives = 475/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I +SATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYISATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI+ ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPTKGQIDDLIGEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + ++ L +M AA L+FE AA++RD I LK+ Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|325128411|gb|EGC51293.1| excinuclease ABC, B subunit [Neisseria meningitidis N1568] Length = 675 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/671 (54%), Positives = 479/671 (71%), Gaps = 21/671 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIARSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++ Q++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNTIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788 D + L K G+ H + L K M AA +L FEEAA +RD Sbjct: 610 --------DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRD 661 Query: 789 EIKRLKSSPYF 799 I+ +K S F Sbjct: 662 RIRNIKESLLF 672 >gi|320547053|ref|ZP_08041351.1| excision endonuclease subunit UvrB [Streptococcus equinus ATCC 9812] gi|320448290|gb|EFW89035.1| excision endonuclease subunit UvrB [Streptococcus equinus ATCC 9812] Length = 663 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/656 (54%), Positives = 480/656 (73%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIQEIESLTGKVLGEVEHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE++ ++ + E+EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEHAIKNILEEMEEQVKKFEEEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +ELEQ IVEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TIVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I ++I + Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLIS---ISK 605 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T+++ D S++K + K +K L+KQMH AA+ L+FE AA++RD + LK+ Sbjct: 606 ANETDVAEDTPDYSSMNKTERKEAIKKLQKQMHEAAEMLDFELAAQLRDMVLELKA 661 >gi|295696763|ref|YP_003590001.1| excinuclease ABC, B subunit [Bacillus tusciae DSM 2912] gi|295412365|gb|ADG06857.1| excinuclease ABC, B subunit [Bacillus tusciae DSM 2912] Length = 659 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/658 (56%), Positives = 478/658 (72%), Gaps = 6/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P GDQP AIA+L +GI + Q LLGVTGSGKT+TMA VI + +P +V+A Sbjct: 6 FQLVSDYEPRGDQPEAIARLTEGIRRGYRHQTLLGVTGSGKTYTMANVIAQVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH Sbjct: 66 HNKTLAAQLAAEFKAFFPNNAVEYFVSYYDYYQPEAYIPHTDTYIEKDAKINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+G+ + Y ++ L++G ++E+L LV QY+R Sbjct: 126 SATSALFERSDVIIVASVSCIYGLGNPDEYRTHVLSLRVGMEKSRREILHRLVDMQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD IEIFP+ + A RV +FG++I+ I+E LTG+ I E + ++ Sbjct: 186 DINFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIDRITEVDVLTGEVIGQREHVAVF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT R L A++ I+ EL RL L +G+LLEAQRLEQR YDLEM++ G C Sbjct: 246 PASHFVTSRERLERAIRDIRVELAERLEVLRGQGKLLEAQRLEQRTNYDLEMMQELGFCP 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G PP TLF+Y P+D LL +DESHVT+PQI GMY GD RK TL E+ Sbjct: 306 GIENYSRHLEGRPAGSPPNTLFDYFPDDFLLLIDESHVTLPQIHGMYGGDKTRKDTLIEH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +ELE + +VEQIIRPTGL+DP VE Sbjct: 366 GFRLPSAADNRPLTFEEFEKKVHQVIYVSATPGPYELEHSEQ-VVEQIIRPTGLLDPKVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTKRMAEDLT+YL E +VRY+HS++KT+E Sbjct: 425 VRPIQGQIDDLVGEIRKRVNRDERVLVTTLTKRMAEDLTDYLKELGFKVRYLHSDIKTIE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ ++RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 485 RMALLRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N + VI+YADTIT S+ AI ET RRR KQ+ +N++H I PQ+V++ + ++I+ E Sbjct: 545 NADGHVIMYADTITDSMAAAIRETERRRAKQMWYNQEHGITPQTVRKAVRDIIEATKAAE 604 Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + A + AQ+LS K+ +A L + L K+M AA L FE AA +RD I L +S Sbjct: 605 EPAVYEVVPKAQKLS---KRERADLIRRLEKEMKEAAKALEFERAAELRDLIVELSAS 659 >gi|295096529|emb|CBK85619.1| excinuclease ABC, B subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 671 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/662 (55%), Positives = 476/662 (71%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG ++ IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHVESVIQRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKTELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L ++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602 Query: 741 AATTNIS--------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A T ++ ++L+ K + + L QM A NL FEEAA+IRD++ + Sbjct: 603 IAKTKAKGRGKARSVVEEDTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 662 Query: 793 LK 794 L+ Sbjct: 663 LR 664 >gi|325132472|gb|EGC55165.1| excinuclease ABC, B subunit [Neisseria meningitidis M6190] Length = 716 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 52 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 172 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 351 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ + + GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 352 GIENYSRHFSSKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650 Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ +S ++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 651 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 710 Query: 797 PYF 799 F Sbjct: 711 LLF 713 >gi|121535499|ref|ZP_01667308.1| excinuclease ABC, B subunit [Thermosinus carboxydivorans Nor1] gi|121305918|gb|EAX46851.1| excinuclease ABC, B subunit [Thermosinus carboxydivorans Nor1] Length = 697 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/655 (56%), Positives = 471/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + P+GDQP AI L +GI E+ Q+LLG TG+GKTFT+AK IE +Q+P +V+A Sbjct: 18 FQVVAPFVPTGDQPQAIEALAEGIFRGERAQVLLGATGTGKTFTIAKTIEKVQKPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH Sbjct: 78 HNKTLAAQLASEFKEFFPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS + Y +++ L+ G ++ E+L LV+ QY+R Sbjct: 138 SATSALFERRDVIIVASVSCIYGLGSPDEYRGLVLSLRQGQVRDRDEILRKLVEIQYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD IEIFP+ + A RV +FG+++E I E LTG+ + + I IY Sbjct: 198 DVNFTRGKFRVRGDVIEIFPAAYGEQAVRVELFGDEVERILEIDTLTGEILAERKHIAIY 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R + A+ I++EL+ RL EL G+LLEAQRLEQR YD+EM+ G C Sbjct: 258 PASHYVTTRENMLRAIADIEKELEERLAELRAAGKLLEAQRLEQRTRYDMEMMLEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR PGE P TL +Y P+D LL +DESHVT+PQ+ MY GD RK L E+ Sbjct: 318 GIENYSRHITGRKPGEAPYTLLDYFPDDFLLVIDESHVTLPQVRAMYNGDKSRKDMLVEH 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ I VSATPG +EL+ +V+QIIRPTGLVDP VE Sbjct: 378 GFRLPSAYDNRPLTFDEFVQRINQVIYVSATPGPYELKTSTR-VVQQIIRPTGLVDPEVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI A R+L+T LTK+MAEDLTE+L E +RVRY+HSE+ T+E Sbjct: 437 VRPIKGQMDDLLGEIKARAAANERVLVTTLTKKMAEDLTEFLREMGVRVRYLHSEIATIE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 497 RADIIRDLRAGAFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YADTIT S++ AIDET RRR Q +N+ H I PQ+V++++ E+I+ Sbjct: 557 NVHGKVIMYADTITDSMRRAIDETNRRRAIQQAYNEAHGITPQTVRKRVKELIETT---K 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T A +L+ + L + L KQM AA NL FE AA +RD + LK Sbjct: 614 VAETPAEYKADRLAGMTRTEMLDLAANLEKQMRQAAKNLEFERAAELRDMLIELK 668 >gi|117928313|ref|YP_872864.1| excinuclease ABC subunit B [Acidothermus cellulolyticus 11B] gi|117648776|gb|ABK52878.1| Excinuclease ABC subunit B [Acidothermus cellulolyticus 11B] Length = 705 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/692 (52%), Positives = 491/692 (70%), Gaps = 30/692 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ ++Y PSGDQP AI +L + I ++ +LLG TG+GKT T+A +IE Sbjct: 4 VTDVQRRVAPFRVISEYRPSGDQPQAIDELERRIRRGDRDVVLLGATGTGKTATIAWLIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +V+ PNK LAAQ +E + P NA+EYFVSYYDYYQPEAY+P+TDTYIEK++S Sbjct: 64 RLQRPTLVIEPNKTLAAQFANELRQLMPENAIEYFVSYYDYYQPEAYIPQTDTYIEKDAS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +++L++G+ +E+ LL Sbjct: 124 INDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMLRLRVGEEIERDILLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R D+ RGTFRV GD+I++ P + E++A R+ MFG+ IE ++ +PLTG+ Sbjct: 184 RLVDIQYTRNDVAFTRGTFRVRGDTIDVIPQY-EELAVRIEMFGDVIERLATLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + E I I+ SHY+ + A++ I+EEL RL ELEK+ +LLEAQRL R TYDL Sbjct: 243 LSEDEEIYIFPASHYIAGPERMARAIRDIEEELAQRLAELEKQNKLLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C IENYSR++ GR PG PP TL +Y PED LL +DESH+T+PQI GMY GD Sbjct: 303 EMLRHIGTCSGIENYSRHIDGRPPGSPPNTLLDYFPEDFLLVIDESHITVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L E+GFRLPS +DNRPLRF+E+ T+ +SATPG +EL + G +VEQ+IR Sbjct: 363 MSRKRVLVEHGFRLPSALDNRPLRFDEFLDRIGQTVYLSATPGPYELAKVGGDVVEQVIR 422 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ + Q++D+ EI + A++G R+L+T LTK+MAEDLT+YL E IRVR Sbjct: 423 PTGLVDPEIVVKPTKGQIDDLVHEIRVRAERGERVLVTTLTKKMAEDLTDYLLELGIRVR 482 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LR G+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TS Sbjct: 483 YLHSEVDTLRRVELLRELRQGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATS 542 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAAR+V+ +V +YADT+T +++ AIDET RRR KQL +N +H I+PQ +++KI Sbjct: 543 LIQTIGRAARHVSGQVHMYADTVTAAMKEAIDETNRRRAKQLAYNAEHGIDPQPIRKKIA 602 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKA-------------HLKS----------- 766 +++D ++ EDA T + + +S+ K A H K Sbjct: 603 DILDTLIREDADTQAL-LGGTGRQVSRGKAPAPGLASKAAPPVGRHAKDLAAMPRQELTR 661 Query: 767 ----LRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +QMH AA L FE AAR+RDEI+ LK Sbjct: 662 LIEELTEQMHAAAAELQFELAARLRDEIRELK 693 >gi|218768351|ref|YP_002342863.1| excinuclease ABC subunit B [Neisseria meningitidis Z2491] gi|9910889|sp|P56996|UVRB_NEIMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|121052359|emb|CAM08691.1| excinuclease ABC subunit B [Neisseria meningitidis Z2491] Length = 675 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/667 (54%), Positives = 479/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|88607428|ref|YP_505866.1| excinuclease ABC subunit B [Anaplasma phagocytophilum HZ] gi|123494148|sp|Q2GID5|UVRB_ANAPZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|88598491|gb|ABD43961.1| excinuclease ABC, B subunit [Anaplasma phagocytophilum HZ] Length = 653 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/657 (54%), Positives = 472/657 (71%), Gaps = 16/657 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ +GDQP AI +L +GI + Q+LLGVTGSGKTFTMA VIE Q PA+++A Sbjct: 4 FKITSEFDAAGDQPEAIRKLSEGIERGVREQVLLGVTGSGKTFTMASVIEKRQCPALIVA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP+NAVEYFVSYYDYYQPEAY+P +D YIEK++ INE+ID +RH Sbjct: 64 HNKTLAAQLYEEMRMFFPNNAVEYFVSYYDYYQPEAYIPHSDVYIEKDALINEKIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D IVV+SVSCIYG+GS E YS+M + L IG ++ +L LV+ QYK Sbjct: 124 SATRSILERRDVIVVASVSCIYGLGSPELYSEMTIPLSIGMQIDLCQLKEKLVELQYKSG 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 RGTF V GD + IFPSH ED WR+SMFG+ IE I E G + N+E +K++ Sbjct: 184 S-QCERGTFSVKGDIVTIFPSHHEDHVWRISMFGDVIESIQEVDNNLGIAVANLEKVKVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVTPRPTL A+ I+EEL+ +I K +++EA+R+ +R +D+EM++ TG+C+ Sbjct: 243 PNSHYVTPRPTLMQALSRIEEELQECVINYRKNNKIIEAERILERTKFDIEMMKETGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G+ GEPP TL +Y+P DSL+F+DESH+TIPQI MY GD RKA L + Sbjct: 303 GIENYSRYLCGKAAGEPPNTLLDYLPVDSLMFIDESHITIPQIRSMYNGDRVRKANLITH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEEW + T + VSATPG +E E+ G++VEQ+IRPTGLVDP Sbjct: 363 GFRLPSALDNRPLTFEEWESRKTTLVYVSATPGKYETERTSGVVVEQLIRPTGLVDPICI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A Q+ DV +E +G R+L+T LTK+MAE+L+E++ E I+V Y+HS+VKTLE Sbjct: 423 VKKASGQIADVVNESQATISEGYRVLVTALTKKMAENLSEHMREIGIKVAYLHSDVKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II LR G+ DVL+G+NLLREGLDIPEC LV ILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RMDIIAQLRTGEIDVLIGVNLLREGLDIPECALVCILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N +VILYAD +TKS++ AIDET RRR Q +NK H I P+S+ + + Sbjct: 543 NMNGRVILYADRVTKSMKAAIDETNRRRAVQESYNKAHGITPKSISKSV----------- 591 Query: 741 AATTNISIDAQQLSLSKKKGKA----HLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A + I + SK K A + L+K+M L A+NL FE+A IR++I +L Sbjct: 592 ATSLKDRITVKGTKGSKSKSAAVTEEDIIKLQKEMLLHAENLEFEKALEIRNQINKL 648 >gi|296314477|ref|ZP_06864418.1| excinuclease ABC subunit B [Neisseria polysaccharea ATCC 43768] gi|296838778|gb|EFH22716.1| excinuclease ABC subunit B [Neisseria polysaccharea ATCC 43768] Length = 675 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/671 (54%), Positives = 480/671 (71%), Gaps = 21/671 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++ Q++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEYAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788 D + L K G+ H + L K M AA +L FEEAA IRD Sbjct: 610 --------DGGKSRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRD 661 Query: 789 EIKRLKSSPYF 799 I+ +K S F Sbjct: 662 RIRSIKESLLF 672 >gi|283795874|ref|ZP_06345027.1| excinuclease ABC subunit B [Clostridium sp. M62/1] gi|291076507|gb|EFE13871.1| excinuclease ABC subunit B [Clostridium sp. M62/1] Length = 663 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 482/656 (73%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIA+L+KG + + LLGVTGSGKTFTMA VI+A+ +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIAELVKGFKEGNQFETLLGVTGSGKTFTMANVIQALNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALSERSDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD +EI+P++ A+R+ FG++++ I+E LTG+ + + I+ Sbjct: 184 DMDFKRGSFRVRGDVLEIYPAYSGGDAYRIEFFGDEVDRITEIDTLTGEIKAQLGHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A K I EELK ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVIPKEKMELAAKNILEELKEQVAWFKSEDKLLEAQRILERTNFDVEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PED L+ +DESH+T+PQI GMY GD RK TL EY Sbjct: 304 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIIDESHITLPQIRGMYAGDRSRKKTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DPP++ Sbjct: 364 GFRLPSALDNRPLNFEEFESKIDQMLFVSATPSDYE-EAHEMLRAEQIIRPTGLLDPPID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++ ++L+T LTKRMAEDLT+Y+ + IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVSEVNREIKKKGKVLITTLTKRMAEDLTDYMRDAGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S+++AI+ET RRRE Q +N++H+I P ++K+ + ++I + Sbjct: 543 NSEGHVIMYADTITDSMRVAIEETKRRREIQQAYNEEHHITPTTIKKAVRDLISISQAAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793 T ++ D + S+ +K+ K +K L K+MH AA LNFEEAA +RD EIK++ Sbjct: 603 GVTNEVTKDPE--SMDEKELKKLVKELTKKMHQAAAELNFEEAAILRDRMVEIKKM 656 >gi|227824384|ref|ZP_03989216.1| excinuclease ABC subunit B [Acidaminococcus sp. D21] gi|226904883|gb|EEH90801.1| excinuclease ABC subunit B [Acidaminococcus sp. D21] Length = 698 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/656 (55%), Positives = 472/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ++ + PSGDQP AI L+KG+ Q+LLG TG+GKTFT+A++I+ +QRP +V+A Sbjct: 35 FQLEAPFAPSGDQPEAIEALVKGVKEGMDTQVLLGATGTGKTFTIAQMIQKVQRPTLVIA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH Sbjct: 95 HNKTLAAQLASEFKAFFPHNAVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDKLRH 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVVSSVSCIYG+G+ + Y ++ L++G V++ +L LVK +Y+R Sbjct: 155 SATSALFERRDVIVVSSVSCIYGLGAPKDYYDSVLSLRVGQEVDRDAILEKLVKIRYERN 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG+FR GD IE+ PS + R+ +FG++++ I E LTG I + I+ Sbjct: 215 DLVLQRGSFRARGDVIEVIPSSYNEKGIRIELFGDEVDSIMEIDVLTGDVIDKRTHVAIF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A I++ELK RL L +EG+LLEA+RLEQR YDLEM+E G C Sbjct: 275 PASHYVTSDENLERARGDIRKELKARLTVLHEEGKLLEAERLEQRTNYDLEMMEEMGYCS 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR GEPP TL Y P+D L +DESHVT+PQ+ MY GD RK L Y Sbjct: 335 GIENYSRHLTGRKAGEPPFTLVNYFPDDFLTVIDESHVTLPQLRAMYAGDRSRKEQLVNY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ R I VSATP ++EL+ + +VEQIIRPTGL+DP +E Sbjct: 395 GFRLPSALDNRPLTFDEFQKERGQIIYVSATPAAYELDHAEQ-VVEQIIRPTGLLDPKIE 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI+ A+ G RIL+T LTK+MAEDLTEYL IRVRY+HS++ T++ Sbjct: 454 VRPIKGQIDDLLGEIHKVAEAGERILVTTLTKKMAEDLTEYLAASGIRVRYLHSDIATID 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 514 RAEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD +T S+Q AI+ET RRR KQ +NK H I P+++++K++E+I +E+ Sbjct: 574 NAHGRVIMYADVMTGSMQRAIEETERRRAKQEAYNKAHGIVPKTIEKKVVELIKLTKVEE 633 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + L LS+K + +K + K M AA L+FE AA RD++ +K Sbjct: 634 DGGTVKAGGVDSLKKLSEKALQKQVKLIEKNMKAAAKQLDFELAAEYRDQMILIKG 689 >gi|320107009|ref|YP_004182599.1| excinuclease ABC subunit B [Terriglobus saanensis SP1PR4] gi|319925530|gb|ADV82605.1| excinuclease ABC, B subunit [Terriglobus saanensis SP1PR4] Length = 662 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/659 (53%), Positives = 476/659 (72%), Gaps = 1/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ TDY P GDQP AI +L G+ EK Q+LLGVTGSGKTFTMAKVI+ + RPA+V+A Sbjct: 3 FQLATDYTPQGDQPRAIKELTAGLSEGEKHQVLLGVTGSGKTFTMAKVIQQVNRPALVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P D YIEKES+INE++D++R Sbjct: 63 HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPSGDLYIEKESTINEELDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER DCI+VSSVSCIYG+GS E+Y M++ L+ G ++++++ LV+ Y+R Sbjct: 123 SATRSLFERRDCIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKREDITRRLVEILYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IEI+P++ E+ A+R+ +FG++I+ +S+ PL G + + IY Sbjct: 183 DNDFRRGTFRVRGDVIEIYPTYDEN-AFRIELFGDEIDNLSQIDPLFGTVKQKYARLPIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV +A + I EL +LEKEGR++EA R+ QR +DLEM+++ G C Sbjct: 242 PKSHYVVQPERKASATESILHELSEWEAQLEKEGRMMEANRIHQRTRFDLEMIKSVGYCH 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PGEPPPTL +Y P D L+F+DESHVT+PQ+ GM+ GD RK L +Y Sbjct: 302 GIENYSRHMSGRLPGEPPPTLLDYFPRDFLIFIDESHVTVPQLHGMWHGDRSRKGNLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+F+E+ I VSATPG +EL + G++VEQIIRPTGL+DPP+E Sbjct: 362 GFRLPSAMDNRPLKFDEFENRTGQIIYVSATPGPYELTKAAGVVVEQIIRPTGLIDPPIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI + + R+L+T LTKRMAEDL Y E ++ RYMHSE++TLE Sbjct: 422 IRPIKGQIDDLLAEIRERSTKNERVLVTTLTKRMAEDLAGYYTEVGVKCRYMHSEIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++++RDLR G++DVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 482 RVKLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILYAD +T S++ AIDET RRR Q+ +N++H I P+SV I + + I+ D Sbjct: 542 HLEGRAILYADKMTDSMRRAIDETDRRRATQVAYNEEHGITPKSVIRPIGDALAGIIDAD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799 A + D ++++ ++ L M AA FE+AA++RD +K L++ + Sbjct: 602 YADITMESDGLPEFATQQELDKYISGLESDMREAAKKFEFEKAAKLRDTVKELRTKEFL 660 >gi|238893826|ref|YP_002918560.1| excinuclease ABC subunit B [Klebsiella pneumoniae NTUH-K2044] gi|238546142|dbj|BAH62493.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 673 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/664 (55%), Positives = 476/664 (71%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I++FP+ +D+A R+ +F ++E +S F PLTG V IY Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++EL++ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI L R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L + Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQ--LGQG 602 Query: 741 AATTNIS-------IDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T ++ LS ++ K + + L QM A NL FEEAA+IRD++ Sbjct: 603 LAKTKAKGRGKAKVVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|322516338|ref|ZP_08069264.1| excision endonuclease subunit UvrB [Streptococcus vestibularis ATCC 49124] gi|322125176|gb|EFX96565.1| excision endonuclease subunit UvrB [Streptococcus vestibularis ATCC 49124] Length = 668 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 15 FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 75 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 315 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + Sbjct: 554 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKANE 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A +++ +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 614 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666 >gi|71907632|ref|YP_285219.1| excinuclease ABC subunit B [Dechloromonas aromatica RCB] gi|90110882|sp|Q47EI2|UVRB_DECAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71847253|gb|AAZ46749.1| Excinuclease ABC subunit B [Dechloromonas aromatica RCB] Length = 690 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/670 (53%), Positives = 480/670 (71%), Gaps = 8/670 (1%) Query: 132 NNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187 N + +TF +++ + P+GDQP AI QL++G+ Q LLGVTGSGKT+TMA Sbjct: 5 NTGTPVVTFEGSPYRLHQPFPPAGDQPEAIRQLVEGLDDGLSFQTLLGVTGSGKTYTMAN 64 Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 VI RPA+V+APNK LAAQLYSEFK FFP N+VEYFVSYYDYYQPEAYVP D +IEK Sbjct: 65 VIARTGRPALVLAPNKTLAAQLYSEFKEFFPENSVEYFVSYYDYYQPEAYVPSRDLFIEK 124 Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 +SSIN+ I++MR SAT+SL+ER D ++V++VSCIYGIG + Y MI+ +++GD ++Q+ Sbjct: 125 DSSINDHIEQMRLSATKSLIERRDVVIVATVSCIYGIGDRDEYHNMILTMRVGDKLDQRA 184 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 ++ L QY+R ++ RGTFRV GD I+IFP+ + A R+S+F +++E + F PLT Sbjct: 185 IVKRLTDMQYERNEMDFHRGTFRVRGDIIDIFPAEHAEHAIRISLFDDEVEGMQFFDPLT 244 Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427 G + ++ SHYVTPR T+ A++ IK+EL+ R+ + +L+EAQR+EQR Sbjct: 245 GHLLHKALRFTVFPASHYVTPRATVLRAVEAIKDELRERIDFFTRNNKLVEAQRIEQRTR 304 Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487 +DLEML+ G C+ IENYSR+ +GR GE PPTL +Y+P D+L+F+DESHV+I Q+ GMY Sbjct: 305 FDLEMLDQIGFCKGIENYSRHFSGRKAGESPPTLIDYLPPDALMFIDESHVSIGQVGGMY 364 Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547 +GD RK L +YGFRLPS +DNRPL+F E+ TI VSATP +E +Q G +VEQ Sbjct: 365 KGDRSRKENLVDYGFRLPSALDNRPLQFNEFEAHMRQTIFVSATPADYE-QQHAGQVVEQ 423 Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 + RPTGL+DP V +R A TQV+D+ EI G R+L+T LTKRM+EDLT++L + I Sbjct: 424 VARPTGLIDPEVIVRPASTQVDDLLAEIGKRIAVGERVLVTTLTKRMSEDLTDFLADNGI 483 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS Sbjct: 484 KVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 543 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727 + SLIQTIGRAAR+++ ILYADT+T+S+Q AI ET RRREKQ+ N +H I P+ V + Sbjct: 544 ERSLIQTIGRAARHIHGTAILYADTVTQSMQRAIAETGRRREKQIAFNLEHGITPRGVSK 603 Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEEAA 784 KI ++ID + +A T + Q+ + KA +K L K M A NL FE+AA Sbjct: 604 KIKDIIDGVYDAGSAQTELKAAQQRAAYDAMDEKAVAREIKRLEKSMMECAKNLEFEKAA 663 Query: 785 RIRDEIKRLK 794 RD++ RL+ Sbjct: 664 AARDDLFRLR 673 >gi|33592858|ref|NP_880502.1| excinuclease ABC subunit B [Bordetella pertussis Tohama I] gi|81836284|sp|Q7VXH4|UVRB_BORPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33572506|emb|CAE42082.1| excinuclease ABC subunit B [Bordetella pertussis Tohama I] gi|332382271|gb|AEE67118.1| excinuclease ABC subunit B [Bordetella pertussis CS] Length = 678 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/662 (55%), Positives = 474/662 (71%), Gaps = 1/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AI L +G+ Q LLGVTGSGKT+TMA +I + RPA+V+A Sbjct: 14 FHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 74 PNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D ++V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV ++I+IFP+ ++A R+++F ++IE + F PLTG+ + + +Y Sbjct: 194 DADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IKEEL+ RL +L +G+L+EAQRLEQR +DLEML+ G C+ Sbjct: 254 PGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCK 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD RK TL +Y Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPIVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ EI+ A R+L+T LTKRMAEDLT++L E +RVRY+HS++ T+E Sbjct: 433 VRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 493 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N + ILYAD IT S++ AIDET RRR KQ++HN H I + V + + E+ID ++ Sbjct: 553 NLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPA 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 S ++ +K ++ L K M A NL FE+AA RD + LKS Sbjct: 613 GHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLD 672 Query: 801 GL 802 G+ Sbjct: 673 GV 674 >gi|325205898|gb|ADZ01351.1| excinuclease ABC, B subunit [Neisseria meningitidis M04-240196] Length = 699 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 481/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN ++G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++ I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 634 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 693 Query: 797 PYF 799 F Sbjct: 694 LLF 696 >gi|254805128|ref|YP_003083349.1| excinuclease ABC subunit B [Neisseria meningitidis alpha14] gi|254668670|emb|CBA06367.1| excinuclease ABC subunit B [Neisseria meningitidis alpha14] Length = 696 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/667 (54%), Positives = 479/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRG 689 Query: 793 LKSSPYF 799 +K + F Sbjct: 690 IKENLLF 696 >gi|225077183|ref|ZP_03720382.1| hypothetical protein NEIFLAOT_02238 [Neisseria flavescens NRL30031/H210] gi|224951474|gb|EEG32683.1| hypothetical protein NEIFLAOT_02238 [Neisseria flavescens NRL30031/H210] Length = 675 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 480/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLYQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLCACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + +++ + L K M AA +L FEEAA IRD I+ +K + Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRGIKEN 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|229541499|ref|ZP_04430559.1| excinuclease ABC, B subunit [Bacillus coagulans 36D1] gi|229325919|gb|EEN91594.1| excinuclease ABC, B subunit [Bacillus coagulans 36D1] Length = 666 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/662 (55%), Positives = 478/662 (72%), Gaps = 2/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ GI + +K+Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 6 FELVSKYKPEGDQPEAIRQLVDGIRAGKKIQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH Sbjct: 66 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND I+++SVSCIYG+GS E Y +++V L+ G +E+ +LL LV QY R Sbjct: 126 SATSALFERNDVIIIASVSCIYGLGSPEEYRELVVSLRTGMEIERNQLLRRLVDIQYARN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ I + + + I+ Sbjct: 186 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIGDRDHVAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I+ EL+ RL EL G+LLEAQRLEQR YDLEM+ G C Sbjct: 246 PASHFVTRNEKLQIAIRNIEAELEERLKELRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D LL +DESHVT+PQI GM+ GD RK L ++ Sbjct: 306 GIENYSRHLALRPPGSTPYTLLDYFPKDFLLVIDESHVTLPQIRGMFNGDQARKQVLVDH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLRFEEFEKHISQMICVSATPGPYELEHTPK-MVEQIIRPTGLLDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E I+V+Y+HSEVKTLE Sbjct: 425 VRPIEGQIDDLLGEIQDRIEKNERVLVTTLTKKMAEDLTDYLKEVGIKVQYLHSEVKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+D +VGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGKYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S++ AI ET RRR Q +NKKH I P+++++ I + I + Sbjct: 545 NANGKVIMYADRITDSMEKAISETKRRRTVQEAYNKKHGITPKTIQKDIRDTIHATYAAE 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 AT + + ++ L+K++ + L ++M AA L+FE+AAR RD + LK+ Sbjct: 605 DATPYEAEETKK-PLTKEERIRMIAELEEKMKEAAKALDFEQAARYRDALLELKAGDDHN 663 Query: 801 GL 802 G+ Sbjct: 664 GI 665 >gi|319410597|emb|CBY90966.1| UvrABC system protein B Protein uvrB; Excinuclease ABC subunit B [Neisseria meningitidis WUE 2594] Length = 699 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/667 (54%), Positives = 479/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 689 Query: 793 LKSSPYF 799 +K + F Sbjct: 690 IKENLLF 696 >gi|257056574|ref|YP_003134406.1| excinuclease ABC subunit B [Saccharomonospora viridis DSM 43017] gi|256586446|gb|ACU97579.1| Excinuclease ABC subunit B [Saccharomonospora viridis DSM 43017] Length = 719 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/693 (52%), Positives = 491/693 (70%), Gaps = 32/693 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FKVVSDYEPAGDQPAAIDELERRIKAGEKHVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN+ ++R+RH Sbjct: 88 HNKTLAAQLANELREFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVVSSVSCIYG+G+ +SY +L +G+ V++ L +LV QY R Sbjct: 148 SATMNLLSRRDVIVVSSVSCIYGLGTPQSYLDRSTRLAVGEEVDRDTFLRALVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A RV FG++I+++ +PLTG +R V+ ++I+ Sbjct: 208 DLAFERGTFRVRGDTVEIIPAY-EELAIRVEFFGDEIDKLYYLHPLTGDIVREVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL+ ++ +LE++G+LLEAQRL R TYD+EM+ G C Sbjct: 267 PATHYVASPERMEKAIRGIEAELEEQIAKLERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI GMY GD RK TL E+ Sbjct: 327 GIENYSRHIDGREPGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDASRKRTLVEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSALDNRPLTWEEFSDRIGQTVYLSATPGPYEMSQTGGEFVEQVIRPTGLVDPEVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI + A++ R+L+T LTK+MAEDLT+YL E IRVRY+HSE+ TL Sbjct: 447 VKPTEGQIDDLVHEIRIRAEKDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEIDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRSGDFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT S++ AIDET RRREKQ+ +NK+H I+P+ +++KI +++D + E Sbjct: 567 NVSGQVHMYADTITDSMRYAIDETNRRREKQIAYNKEHGIDPKPLRKKIADILDRVYTE- 625 Query: 741 AATTNISIDAQQLSLSKKKGKAH----------------------------LKSLRKQMH 772 A + + I+ + +GK ++ L QM Sbjct: 626 AEDSELGIEVGGSGRNVSRGKTPEQGDRKRSSGVLVDRDVSNMPRAELADLIRQLTDQMM 685 Query: 773 LAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 AA +L FE AAR+RDEI LK +G+D++ Sbjct: 686 QAARDLQFELAARLRDEISELKKE--LRGMDEA 716 >gi|187931548|ref|YP_001891532.1| excinuclease ABC subunit B [Francisella tularensis subsp. mediasiatica FSC147] gi|187712457|gb|ACD30754.1| excinuclease ABC, B subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 668 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y+QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYTQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+M E+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRSK SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSKKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|297571462|ref|YP_003697236.1| excinuclease ABC subunit B [Arcanobacterium haemolyticum DSM 20595] gi|296931809|gb|ADH92617.1| excinuclease ABC, B subunit [Arcanobacterium haemolyticum DSM 20595] Length = 682 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/662 (53%), Positives = 486/662 (73%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQPAAI +L + I++ EK +LLG TG+GK+ T A +IE +QRP +++ Sbjct: 14 FEVISEYTPSGDQPAAIKELAERINAGEKDIVLLGATGTGKSATTAWLIEQIQRPTLIIE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ R D +VV+SVSCIYG+G+ + Y +V + +G +E+ LL V QY R Sbjct: 134 SATNSLITRRDTVVVASVSCIYGLGTPQEYVDRMVDVHVGQELERDALLKQFVTMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG +R V+ I+ Sbjct: 194 DMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDSIALLHPLTGNVVRQVDHAYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV +N+A+ I++EL+ RL EL ++ +LLEAQRLE R TYDLEM+ GSC Sbjct: 253 PASHYVAGEERMNSAIASIEDELRDRLGELREQNKLLEAQRLEMRTTYDLEMMRNLGSCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED +L +DESHVT+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRGPGTPPNTLLDYFPEDFVLIIDESHVTVPQIGAMYEGDMSRKRTLVEF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+F E+ T+ +SATPG +E+E G VEQIIRPTGLVDP + Sbjct: 373 GFRLPSAMDNRPLKFAEFLERIGQTVYLSATPGKYEMELSDGY-VEQIIRPTGLVDPEII 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +++ + ++ R+L+T LTK+MAEDLT+Y ER ++V Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLEQVRIRTERDERVLITTLTKKMAEDLTDYFAERGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLGKFDVLVGINLLREGLD+PE LVAILDADK+GFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRLGKFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD+IT +++ AIDET RRREKQL +N+KH I+P+ +++KI +V D ++ ED Sbjct: 552 NVSGQVHMYADSITPNMKEAIDETNRRREKQLAYNEKHGIDPKPLRKKIADVTDMLVRED 611 Query: 741 AATTNISIDAQQLSLSKKK---GKAH-----LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 T + + S K H L L++QM +AA++L FE AAR+RDEI Sbjct: 612 IDTDELLKGGYRKEKSVKDRLPADGHEIELLLVELQEQMRVAAEHLQFELAARLRDEIND 671 Query: 793 LK 794 +K Sbjct: 672 VK 673 >gi|309378820|emb|CBX22525.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 675 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/667 (54%), Positives = 480/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++ Q++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K S F Sbjct: 666 IKESMLF 672 >gi|167626315|ref|YP_001676815.1| excinuclease ABC subunit B [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596316|gb|ABZ86314.1| excinuclease ABC, B subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 668 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/660 (54%), Positives = 478/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L++GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLIVA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +KI+ + I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKTLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + + ++ IK ELK R+ E+EG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q VEQ+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + RIL+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS++ A+DET RRR+ Q EHNKK+NI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMKKAMDETLRRRQLQDEHNKKNNITPKTIIKSIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNSRLKVDDVDVSAILGMTEASKVIKALEKRMRAYAKELEFEQATAIRDKITEIK 662 >gi|15677197|ref|NP_274350.1| excinuclease ABC subunit B [Neisseria meningitidis MC58] gi|9911092|sp|O33395|UVRB_NEIMB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|7226574|gb|AAF41706.1| excinuclease ABC, subunit B [Neisseria meningitidis MC58] gi|325200045|gb|ADY95500.1| excinuclease ABC, B subunit [Neisseria meningitidis H44/76] Length = 675 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 481/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN ++G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++ I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 610 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|304395751|ref|ZP_07377634.1| excinuclease ABC, B subunit [Pantoea sp. aB] gi|304357045|gb|EFM21409.1| excinuclease ABC, B subunit [Pantoea sp. aB] Length = 673 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/663 (55%), Positives = 472/663 (71%), Gaps = 8/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG +ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+TVLTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736 N+N K ILY D IT S+ AI+ET RRREKQ HN+++ I PQ + +KI +++ + + Sbjct: 545 NINGKAILYGDKITPSMARAIEETERRREKQQLHNEQNGIVPQGLNKKITDILELGNNIV 604 Query: 737 LLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A +AQ L+ L+ + + + L QM A NL FE+AA +RD++ Sbjct: 605 KTRGKAKPARPGEAQALADFKLLTPQALQKKIHELEGQMQQHAQNLEFEQAANVRDQLHE 664 Query: 793 LKS 795 L++ Sbjct: 665 LRT 667 >gi|322373405|ref|ZP_08047941.1| excinuclease ABC subunit B [Streptococcus sp. C150] gi|321278447|gb|EFX55516.1| excinuclease ABC subunit B [Streptococcus sp. C150] Length = 668 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 15 FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 75 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGKVEHLVLF 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I E++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 255 PATHFMTNEEHMEEAIKNIMAEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 315 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 434 VRPTMGQMDDLLGEINVRTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + Sbjct: 554 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKANE 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A ++D +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 614 AEVAEDTVDYS--AMNKKERQEAVKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666 >gi|317405208|gb|EFV85547.1| UvrABC system protein B [Achromobacter xylosoxidans C54] Length = 679 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/645 (56%), Positives = 467/645 (72%), Gaps = 7/645 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AI L++G+ Q LLGVTGSGKT+TMA VI + RPA+V+A Sbjct: 18 FHLYQPYPPAGDQPGAIEGLIQGVQDGLMYQTLLGVTGSGKTYTMANVIAQLGRPALVLA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 78 PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 138 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDQISRREILARLVAMQYTRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+IFP+ ++A R+++F ++IE + F PLTG+ + + +Y Sbjct: 198 DAEFTRGVFRVRGETIDIFPAESAELALRLTLFDDEIESLELFDPLTGRIRQKLPRFTVY 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IKEEL+ R +G L+EAQRLEQR +DLEML+ G C+ Sbjct: 258 PGSHYVTPRDTVLRAIETIKEELRERTKRFVDDGHLVEAQRLEQRTRFDLEMLQELGFCK 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+S MYRGD RK TL +Y Sbjct: 318 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLSAMYRGDRSRKETLVQY 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 378 GFRLPSALDNRPLKLEEFEARMRQCVFVSATPAAYEKEHADN-VVEQVVRPTGLVDPIVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + ARTQV+D+ +I QG R+L+T LTKRMAEDLT++L E +RVRY+HS++ T+E Sbjct: 437 VLPARTQVDDLLGQIKARTSQGERVLVTTLTKRMAEDLTDFLTEHGVRVRYLHSDIDTVE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 497 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N ILYAD IT S+Q A++ET+RRR KQL+ N H I + V++ + E+ID I+ Sbjct: 557 NLNGHAILYADRITDSMQRAMEETSRRRAKQLQFNADHGITARGVQKAVRELIDGIV--- 613 Query: 741 AATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 A + +++A +L +K +K L K M A NL FE+ Sbjct: 614 APVQHDALEAAVPAELLKDEKALAREIKRLEKLMMDHARNLEFEQ 658 >gi|312863813|ref|ZP_07724051.1| excinuclease ABC, B subunit [Streptococcus vestibularis F0396] gi|311101349|gb|EFQ59554.1| excinuclease ABC, B subunit [Streptococcus vestibularis F0396] Length = 663 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P +V+A Sbjct: 10 FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + ++ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EE++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R+ +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPIMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKANE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A +++ +++KK+ + +K L+KQMH AA+ L+FE AA+IRD + LKS Sbjct: 609 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661 >gi|90411666|ref|ZP_01219676.1| excinuclease ABC subunit B [Photobacterium profundum 3TCK] gi|90327556|gb|EAS43909.1| excinuclease ABC subunit B [Photobacterium profundum 3TCK] Length = 674 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/665 (53%), Positives = 479/665 (72%), Gaps = 13/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI RP +MA Sbjct: 5 FSLSSGFSPAGDQPTAINQLLEGLDAGLAHQTLLGVTGSGKTFTIANVIAEANRPTFIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+++SVS IYG+G +SY +M++ ++ GD + Q+++L L + QY R Sbjct: 125 SATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RG FRV G+ I++FP+ E A R+ +F +++E IS F PLTG + +N+ I Sbjct: 185 DVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECISVFDPLTGAILEKNLPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK+EL +R +L +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREKILEAIEKIKDELVVRRKQLMDNNKLVEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+ QI MYRGD RK L E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPADGLLILDESHVTVSQIGAMYRGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP++F+E+ L P TI VSATPG +E+EQ I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPMKFDEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + +G R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIREAKGERVLVTTLTKRMSEDLTEYLAEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+RDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEILRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ + ILY D IT S++ AI ET RRREKQ HN+K+ I PQ + +K+ ++++ L + Sbjct: 545 RNLEGRAILYGDKITGSMERAISETNRRREKQTIHNEKNGITPQGLNKKVGDILE--LGK 602 Query: 740 DAATTNISIDAQQLSLSKKKG----------KAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ++ + ++ AQ +++ KG + ++ L +M+ A NL FE+AA RD+ Sbjct: 603 PSSRSRMNKAAQLNRVAESKGTYVNLSPQQLEVEIQRLETEMYDLAQNLEFEKAAETRDK 662 Query: 790 IKRLK 794 I L+ Sbjct: 663 IHTLR 667 >gi|296121246|ref|YP_003629024.1| excinuclease ABC subunit B [Planctomyces limnophilus DSM 3776] gi|296013586|gb|ADG66825.1| excinuclease ABC, B subunit [Planctomyces limnophilus DSM 3776] Length = 707 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/658 (55%), Positives = 479/658 (72%), Gaps = 12/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI L+KG+ + K Q LLGVTGSGKTFTMA VIE +QRPA+V++ Sbjct: 4 FQIDSRFRPAGDQPKAIEALVKGLKNDRKNQTLLGVTGSGKTFTMANVIEQLQRPALVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFPHNAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE+IDR+R Sbjct: 64 HNKTLAAQLYAEFKEFFPHNAVTYFVSYYDYYQPEAYIPQRDIYIEKDSSINEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +L+ R D IVV+SVSCIYG+GS + Y +M++ L+ G+S+++ ELL L QY R Sbjct: 124 LATSALVSRRDVIVVASVSCIYGLGSPKDYLEMMIPLRKGESIDRDELLRKLCDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+++P++ E+ A+R+ ++G++I+++S +P+T ++R++E I IY Sbjct: 184 DHAPERANFRVRGDVIDVWPAY-EEFAYRIELWGDEIDKLSIIHPVTSDEVRSLEEIYIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYV P + +A+ I++EL +L + +KEG+LLEAQRL R +DLE+L G C Sbjct: 243 PAKHYVLPEDRVASAVAEIEKELAEQLEKFKKEGKLLEAQRLNARTRHDLELLREVGFCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PGEPP TL ++ P D L F+DESHVTIPQI M+ GD RK TL E+ Sbjct: 303 GIENYSRALSGRPPGEPPYTLLDFFPNDFLTFIDESHVTIPQIRAMFNGDHARKTTLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPL+F+EW R I VSATP WELEQ QG IVEQ+IRPTGLVDP + Sbjct: 363 GFRLPMALDNRPLKFDEWETRRKQAIFVSATPSDWELEQSQGEIVEQVIRPTGLVDPVIH 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I +R QV+ + I A++ R+L+T LTK++ EDLT YL E +R ++HSE+ E Sbjct: 423 IHPSRGQVQHLMGLIKGRAEKDERVLVTALTKKLCEDLTAYLREEGLRCAWLHSELDAFE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR+LR GK+D LVG+NLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGR+AR Sbjct: 483 RVEIIRELREGKYDTLVGVNLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRSAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN++V LYAD++T S+QLAIDET RRRE Q+ +NKKH I P+++++ I I+ ED Sbjct: 543 NVNAEVYLYADSVTNSMQLAIDETNRRRELQVAYNKKHGITPETIRKSIRRGIE----ED 598 Query: 741 AATTNISIDAQQLSLSKKKGK----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A I QQ S + + ++ L +M AA++L+FE AA++RD I +LK Sbjct: 599 AEANKI---VQQASGKSSEVEYVTLEYISELEAEMLKAAESLDFERAAQLRDRILQLK 653 >gi|329118198|ref|ZP_08246908.1| excision endonuclease subunit UvrB [Neisseria bacilliformis ATCC BAA-1200] gi|327465619|gb|EGF11894.1| excision endonuclease subunit UvrB [Neisseria bacilliformis ATCC BAA-1200] Length = 675 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/671 (54%), Positives = 483/671 (71%), Gaps = 21/671 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H+I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHSIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788 D+ + L K G+ H + L K M AA +L FEEAA +RD Sbjct: 610 --------DSGKGRLKGKSKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRD 661 Query: 789 EIKRLKSSPYF 799 I+ +K + F Sbjct: 662 RIRNIKENLLF 672 >gi|332799596|ref|YP_004461095.1| UvrABC system protein B [Tepidanaerobacter sp. Re1] gi|332697331|gb|AEE91788.1| UvrABC system protein B [Tepidanaerobacter sp. Re1] Length = 665 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/658 (55%), Positives = 483/658 (73%), Gaps = 2/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L +GI+ K Q LLG TG+GKTFT+A +I+ +QRP +V+A Sbjct: 4 FEVVSEYIPRGDQPQAIQRLAEGINKGYKFQTLLGATGTGKTFTIAHLIQQVQRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIY +GS Y +V L+ G +++ E++ LV+ Q+ R Sbjct: 124 SATAALFERRDVVIVASVSCIYSLGSPIDYENQVVSLRSGMEIDRDEVVRKLVEIQFNRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RGTFR+ GD +EIFP+ + A RV FG+ I+ I EF LTG+ I + I+ Sbjct: 184 EIDFHRGTFRLRGDILEIFPASFTEKAVRVEFFGDIIDRILEFDTLTGEIIGERNHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY TP+ + A+K I+ EL+ RL EL+ +G++LEA RLEQR YD+EML G C+ Sbjct: 244 PASHYATPKDKIEVAIKSIEMELEQRLAELKDQGKVLEAARLEQRTKYDIEMLREMGYCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE P TL +Y P+D L+ +DESHVT+PQI M+ GD RK +L E+ Sbjct: 304 GIENYSRHLSGRKAGEAPFTLLDYFPKDYLIIIDESHVTLPQIHAMWAGDRSRKESLIEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I +SATP S+EL++ +VEQIIRPTGLVDP VE Sbjct: 364 GFRLPSAFDNRPLVFEEFEERVNQLIFLSATPASYELKKSAQ-VVEQIIRPTGLVDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI L A++ R+L+T LTKRMAEDLT+YL E IRVRY+HSE+ TLE Sbjct: 423 VRPVKGQIDDLIWEIKLRAKKNQRVLVTTLTKRMAEDLTDYLKEAGIRVRYLHSEIHTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFD LVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RLQIIRDLRLGKFDCLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YADTIT+S+ AI ET RRR+ QL++NKKH I P +VK+ + ++I+ + + Sbjct: 543 NVDGRVIMYADTITQSMARAISETNRRRKIQLDYNKKHGIVPTTVKKSVRDLIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 T + + +SKK+ K +++L +QM+ AA L FE+AA +RD I +K+ + Sbjct: 603 EKTDYLP-EKDITKMSKKELKTFVENLERQMNDAAKKLEFEKAAELRDLIFEIKAEAF 659 >gi|325266917|ref|ZP_08133588.1| excision endonuclease subunit UvrB [Kingella denitrificans ATCC 33394] gi|324981658|gb|EGC17299.1| excision endonuclease subunit UvrB [Kingella denitrificans ATCC 33394] Length = 712 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/663 (53%), Positives = 480/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 48 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 107 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 108 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 167 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 168 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 227 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 228 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 287 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 288 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 347 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 348 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 407 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 408 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 466 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 467 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 526 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 527 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 586 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 587 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 646 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 647 DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 706 Query: 797 PYF 799 F Sbjct: 707 LLF 709 >gi|316984134|gb|EFV63112.1| excinuclease ABC, B subunit [Neisseria meningitidis H44/76] gi|325140446|gb|EGC62967.1| excinuclease ABC, B subunit [Neisseria meningitidis CU385] gi|325144530|gb|EGC66829.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240013] Length = 716 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 481/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 52 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 172 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 351 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN ++G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 471 IRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++ I PQ +K+++ ++ID + E+ Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEE 650 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 651 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 710 Query: 797 PYF 799 F Sbjct: 711 LLF 713 >gi|218290403|ref|ZP_03494533.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239531|gb|EED06725.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius LAA1] Length = 663 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/653 (55%), Positives = 476/653 (72%), Gaps = 1/653 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD P GDQP AI L+ G++S + Q LLGVTGSGKTFTMA +I + RP +V+A Sbjct: 8 FELVTDMKPQGDQPQAIEALVDGVYSGLRHQTLLGVTGSGKTFTMANIIAEVNRPTLVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH Sbjct: 68 HNKTLAAQLAAEFRAFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDAKINDEIDKLRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++LERND +VV+SVS IYG+G+ E Y ++ L++G ++++ ++L LV QY R Sbjct: 128 SATAAILERNDVLVVASVSAIYGLGNPEEYRHHVLSLRVGATMDRNQMLRKLVDMQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A RV FG++I+ ISE LTG+ + ++ Sbjct: 188 DINFTRGTFRVRGDVVEIFPASRDENAIRVEFFGDEIDRISEINVLTGEVVARRSHFSVF 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R L A++ I+ EL+ RL EL +G+LLEAQRLEQR YD+EM+ G C Sbjct: 248 PASHYVTSRERLERAIERIRAELEERLAELRAQGKLLEAQRLEQRTHYDIEMMLEMGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GEPP TL +Y P L F+DESHVTIPQ+ GMY GD RK TL E+ Sbjct: 308 GIENYSRHLEGREAGEPPYTLLDYFPPGFLTFIDESHVTIPQLRGMYNGDRSRKLTLIEH 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATPG +E ++ Q IVEQIIRPTGLVDP + Sbjct: 368 GFRLPSAADNRPLKFEEFERAVGQCIYVSATPGPYE-QKHQQRIVEQIIRPTGLVDPEIH 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E I+VRY+HS++KT+E Sbjct: 427 VRPVKGQIDDLVGEIRERIRRDERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSDIKTIE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 487 RMVILRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSHTSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTIT+S+++AI+ET RRR+KQ+ +N++H I PQ+V++ + +VI+ + + Sbjct: 547 NANGTVIMYADTITESMRIAIEETERRRQKQIAYNREHGITPQTVRKAVRDVIESTKVAE 606 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + +++ + LS ++ K + L ++M AA L FE AA +RD I L Sbjct: 607 SEEDYVAVAEKAQKLSGRERKELIAKLEQEMKAAAKALEFERAAELRDMIMEL 659 >gi|208779831|ref|ZP_03247175.1| excinuclease ABC, B subunit [Francisella novicida FTG] gi|208744286|gb|EDZ90586.1| excinuclease ABC, B subunit [Francisella novicida FTG] Length = 668 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEAMKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|240016341|ref|ZP_04722881.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA6140] gi|240080461|ref|ZP_04725004.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA19] gi|240113169|ref|ZP_04727659.1| excinuclease ABC subunit B [Neisseria gonorrhoeae MS11] gi|240115928|ref|ZP_04729990.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID18] gi|240118225|ref|ZP_04732287.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID1] gi|240123774|ref|ZP_04736730.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID332] gi|240125963|ref|ZP_04738849.1| excinuclease ABC subunit B [Neisseria gonorrhoeae SK-92-679] gi|254493961|ref|ZP_05107132.1| UvrABC system protein B [Neisseria gonorrhoeae 1291] gi|260440258|ref|ZP_05794074.1| excinuclease ABC subunit B [Neisseria gonorrhoeae DGI2] gi|268596600|ref|ZP_06130767.1| UvrABC system protein B [Neisseria gonorrhoeae FA19] gi|268599249|ref|ZP_06133416.1| UvrABC system protein B [Neisseria gonorrhoeae MS11] gi|268601596|ref|ZP_06135763.1| UvrABC system protein B [Neisseria gonorrhoeae PID18] gi|268603935|ref|ZP_06138102.1| UvrABC system protein B [Neisseria gonorrhoeae PID1] gi|268682398|ref|ZP_06149260.1| UvrABC system protein B [Neisseria gonorrhoeae PID332] gi|268684556|ref|ZP_06151418.1| UvrABC system protein B [Neisseria gonorrhoeae SK-92-679] gi|291043553|ref|ZP_06569269.1| UvrABC system protein B [Neisseria gonorrhoeae DGI2] gi|2499099|sp|Q50939|UVRB_NEIGO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|555749|gb|AAA75358.1| UvrB [Neisseria gonorrhoeae] gi|226513001|gb|EEH62346.1| UvrABC system protein B [Neisseria gonorrhoeae 1291] gi|268550388|gb|EEZ45407.1| UvrABC system protein B [Neisseria gonorrhoeae FA19] gi|268583380|gb|EEZ48056.1| UvrABC system protein B [Neisseria gonorrhoeae MS11] gi|268585727|gb|EEZ50403.1| UvrABC system protein B [Neisseria gonorrhoeae PID18] gi|268588066|gb|EEZ52742.1| UvrABC system protein B [Neisseria gonorrhoeae PID1] gi|268622682|gb|EEZ55082.1| UvrABC system protein B [Neisseria gonorrhoeae PID332] gi|268624840|gb|EEZ57240.1| UvrABC system protein B [Neisseria gonorrhoeae SK-92-679] gi|291012016|gb|EFE04005.1| UvrABC system protein B [Neisseria gonorrhoeae DGI2] gi|317164480|gb|ADV08021.1| excinuclease ABC subunit B [Neisseria gonorrhoeae TCDC-NG08107] Length = 675 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/667 (53%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|94986685|ref|YP_594618.1| excinuclease ABC subunit B [Lawsonia intracellularis PHE/MN1-00] gi|94730934|emb|CAJ54297.1| Helicase subunit of the DNA excision repair complex [Lawsonia intracellularis PHE/MN1-00] Length = 676 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/662 (54%), Positives = 468/662 (70%), Gaps = 10/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F ++T Y P GDQP AI Q++ I S K Q+LLGVTGSGKTFTMA VI RPA+++ Sbjct: 5 LFTIKTQYKPQGDQPEAIKQIVSNIQSGVKDQVLLGVTGSGKTFTMANVIAQCNRPALIL 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY+EFK FP+NAVEYFVSYYDYYQPEAYVP +D YIEK+SSIN+ ID++R Sbjct: 65 APNKTLAAQLYNEFKELFPYNAVEYFVSYYDYYQPEAYVPSSDVYIEKDSSINDDIDKLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT +LL R D I+++SVSCIYG+GS E Y+++I+ ++ G + E+++ LV QY+R Sbjct: 125 HAATHALLTRRDVIIIASVSCIYGLGSPEYYARLIIPVEKGQQINMDEIITRLVDIQYQR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ R TFRV GD +EI P++ + A R+ FGN+IEEI E PLTG+ + NV I Sbjct: 185 NDMDFHRATFRVRGDVLEIIPAYEHERALRLEFFGNEIEEIREIDPLTGEVLGNVGKTVI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y SHYV+ R L AM I++EL RL + + +L+EAQRLEQ+ DLEM++ G C Sbjct: 245 YPASHYVSDRDNLIRAMTDIQKELCERLYDFQATNKLVEAQRLEQKTQLDLEMIQEFGYC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR PG+PP TL +Y P+D L F+DESH+ IPQ+ GM++GD RK TL + Sbjct: 305 NGIENYSRHLDGRKPGDPPSTLLDYFPKDFLFFIDESHIAIPQVGGMFKGDRSRKQTLVD 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL F E+ I VSATPG WEL++ QGII EQIIRPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLEFHEFLTRLNQVIYVSATPGPWELDRSQGIITEQIIRPTGLLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q+E + +E R+L+T LTKRMAEDLT+YL +I RY+HS++ TL Sbjct: 425 EVRPIKGQIESLLEECYQRVNSHERVLITTLTKRMAEDLTDYLNNMSINTRYLHSDIDTL 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ II+ LR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAA Sbjct: 485 ERMAIIKSLRTGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ KVIL+ADT+TKS++ AIDET RRR Q E N KHNI P+++++ ++ D I Sbjct: 545 RNVSGKVILFADTMTKSMKAAIDETRRRRALQQEWNTKHNITPKTIQKSVVTPFDMISAN 604 Query: 740 DAATTNI-----SIDAQQLSLSKKKGKA-----HLKSLRKQMHLAADNLNFEEAARIRDE 789 ++ S+D ++L + K ++K L +M AA L FE+AA +RD Sbjct: 605 TSSKKGCRKNKHSMDTKELFVITDKTSPEDITKYIKQLEYEMKEAAKELEFEKAAVLRDR 664 Query: 790 IK 791 IK Sbjct: 665 IK 666 >gi|171779931|ref|ZP_02920835.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281279|gb|EDT46714.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 663 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/665 (54%), Positives = 480/665 (72%), Gaps = 11/665 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 NNH F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI Sbjct: 7 NNH------FKLVSKYEPSGDQPQAIETLVNNIEGGEKAQILLGATGTGKTYTMSQVIAK 60 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+ Sbjct: 61 VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV 120 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N++ID++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ Sbjct: 121 NDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLND 180 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + Sbjct: 181 LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL 240 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 +VE + I+ +H++T + A++ I E++ ++ + E EG+L+EAQR+ QR YD+E Sbjct: 241 GDVEHLAIFPATHFMTNEEHMEEAIQKILAEMEDQVKQFEAEGKLIEAQRIRQRTEYDVE 300 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 ML G +ENYS Y+ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD Sbjct: 301 MLREMGYTNGVENYSSYMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDR 360 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L YGFRLPS +DNRPLR EE+ + VSATPG +ELEQ +VEQIIRP Sbjct: 361 SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRP 419 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP VE+R Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+Y Sbjct: 420 TGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKY 479 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MHS++KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ L Sbjct: 480 MHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGL 539 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAARN VI+YAD IT+S+Q A+DET RRR+ Q+ +N++H I PQ++K+ E Sbjct: 540 IQTIGRAARNSEGHVIMYADKITESMQKAMDETARRRKIQMRYNEEHGIVPQTIKK---E 596 Query: 732 VIDPILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + D I + A T ++ D S++K + K +K L+KQMH AA+ L+FE AA++RD + Sbjct: 597 IRDLISISKATDTEVAEDTPDYSSMNKAERKDAIKKLQKQMHEAAEMLDFELAAQLRDMV 656 Query: 791 KRLKS 795 LK+ Sbjct: 657 LELKA 661 >gi|58585030|ref|YP_198603.1| excinuclease ABC subunit B [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497603|sp|Q5GRL3|UVRB_WOLTR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|58419346|gb|AAW71361.1| Helicase subunit of the DNA excision repair complex, UvrB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 645 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 468/655 (71%), Gaps = 13/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI L+ G++ ++ Q+LLGVTGSGKTFTMA VI RPA+++A Sbjct: 3 FQLVTHFQPAGDQPQAIDSLVAGLNDNKRDQVLLGVTGSGKTFTMANVIARTNRPALIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S INE+ID +R+ Sbjct: 63 HNKTLAAQLYEEMKGFFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSVINERIDMLRY 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA SLLER D IVV+SVSCIYG+GS ESY M + L GD + + L+ L QYKR Sbjct: 123 SAVCSLLERRDTIVVASVSCIYGLGSPESYLSMTITLSTGDRIRINDFLNDLANLQYKRS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FR+ GD I+IFP++ ED AWR+ + GN+IE ISE +TG I+ ++ I I+ Sbjct: 183 DIRFERGYFRMRGDVIDIFPAYYEDKAWRLLLIGNEIEGISEINAITGNIIKCIDKITIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NS+++T R TL A++ I+EEL RL + +++EAQRLEQR +D+EM+ TG+C+ Sbjct: 243 PNSYHITSRETLLRAVQPIREELNERLDYYYSQNKIVEAQRLEQRTNFDIEMMVATGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G G+ PPTLFEY+PED +LFVDESHVT+PQI MY G+ RK L ++ Sbjct: 303 GIENYSRYLYGMEAGDAPPTLFEYLPEDVILFVDESHVTVPQIGAMYNGNESRKKKLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+EW +RP TI +SATPG +EL + + VEQ+IRPTG+ DP Sbjct: 363 GFRLPSAFDNRPLKFKEWESMRPQTIYISATPGKYELARTNNLFVEQVIRPTGITDPICI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A QV DV E + ++G +L+T LTK+MAE L E++ E N++V Y+HS++ LE Sbjct: 423 VKPAEAQVYDVVHEAQVTIKRGFCVLITTLTKKMAEKLAEHMSELNMKVSYLHSDISALE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+ LR + DVL+G+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RIDIVYKLRSKEIDVLIGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N S+ ILYAD +T S+ A+ ET RRR+KQ +++ HN+ P+++ + I + ++ Sbjct: 543 NAESRAILYADKVTGSMDRALKETERRRKKQKKYSVLHNVLPKTIIKPISNTLKEKVVVK 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T ++ D + SLRKQM A NL FEEAA+I++ I R+ + Sbjct: 603 VTTIGMNKDT-------------VSSLRKQMLAHAKNLEFEEAAKIKNIIGRINN 644 >gi|54308311|ref|YP_129331.1| excinuclease ABC subunit B [Photobacterium profundum SS9] gi|81828819|sp|Q6LT47|UVRB_PHOPR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|46912739|emb|CAG19529.1| Putative excinuclease ABC subunit B [Photobacterium profundum SS9] Length = 674 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 475/663 (71%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI RP +MA Sbjct: 5 FSLSSGFSPAGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTIANVIAESNRPTFIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+++SVS IYG+G +SY +M++ ++ GD + Q+++L L + QY R Sbjct: 125 SATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RG FRV G+ I++FP+ E A R+ +F +++E I+ F PLTG + +++ I Sbjct: 185 DVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECINVFDPLTGAVLQKDLPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK+EL +R +L +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREKILEAIEKIKDELVVRRKQLMDSNKLVEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+ QI MYRGD RK L E Sbjct: 305 SGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP++FEE+ L P TI VSATPG +E+EQ I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPMKFEEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + +G R+L+T LTKRM+EDL EYL E N++VRY+HS++ T+ Sbjct: 425 EVRPVATQVDDLLSEIRIREVKGERVLVTTLTKRMSEDLAEYLAEHNVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ + ILY D IT S++ AI ET RRREKQ HNKK+ I PQ + +K+ ++++ Sbjct: 545 RNLEGRAILYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILELGKPS 604 Query: 740 DAATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + TN + +++ LS ++ + ++ L +M+ A NL FE+AA RD+I Sbjct: 605 SRSRTNKAAQLNRVAESKGTYVNLSPQQLELEIQRLETEMYDLAQNLEFEKAAEARDKIH 664 Query: 792 RLK 794 L+ Sbjct: 665 TLR 667 >gi|9910887|sp|P56981|UVRB_BACCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B Length = 658 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 6 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 66 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 126 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 186 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE G+ VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGV-VEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + +++L +M AA L+FE AA++RD I LK+ Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|50513706|pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point Mutant Y96a Revealing A Novel Fold For Domain 2 gi|50513707|pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point Mutant Y96a Revealing A Novel Fold For Domain 2 Length = 658 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/655 (56%), Positives = 473/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDY QPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + +++L +M AA L+FE AA++RD I LK+ Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|222153289|ref|YP_002562466.1| excinuclease ABC subunit B [Streptococcus uberis 0140J] gi|254764912|sp|B9DSH1|UVRB_STRU0 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|222114102|emb|CAR42542.1| UvrABC system protein B (UvrB protein) [Streptococcus uberis 0140J] Length = 663 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 479/663 (72%), Gaps = 9/663 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 +D F++ + Y PSGDQP AI QL+ I EK Q+LLG TG+GKT+TM++VI + +P Sbjct: 5 RDENTFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R D RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + E Sbjct: 185 QFERNDFDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKILGEAE 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ +H+VT + ++ I+ EL +L E EG+LLEAQRL+QR YD+EML Sbjct: 245 HLVLFPATHFVTNDEHMEASIAKIQAELASQLKVFESEGKLLEAQRLKQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +YGFRLPS +DNRPLR EE+ + VSATPG +ELEQ IVEQIIRPTGL+ Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TIVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R Q++D+ EINL ++G R +T LTK+MAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPIVEVRPTMGQMDDLLGEINLRTERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN +VI+YAD +T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I Sbjct: 544 GRAARNSQGRVIMYADKMTESMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISI 603 Query: 736 ILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 TN ++ + L ++K + + +K L+KQMH AA+ L+FE AA+IRD + Sbjct: 604 -----TKGTNTEVEEESLDYSVMTKSERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLE 658 Query: 793 LKS 795 LKS Sbjct: 659 LKS 661 >gi|7766820|pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In Complex With Atp Length = 657 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 244 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 304 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE G+ VEQIIRPTGL+DP ++ Sbjct: 364 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGV-VEQIIRPTGLLDPTID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 423 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 543 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + +++L +M AA L+FE AA++RD I LK+ Sbjct: 601 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 655 >gi|238794062|ref|ZP_04637679.1| UvrABC system protein B [Yersinia intermedia ATCC 29909] gi|238726567|gb|EEQ18104.1| UvrABC system protein B [Yersinia intermedia ATCC 29909] Length = 680 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/660 (55%), Positives = 468/660 (70%), Gaps = 5/660 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+ Sbjct: 14 LFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVL 73 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 74 APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 133 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 134 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 193 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V + Sbjct: 194 NDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTV 253 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK EL R L +LLE QR+ QR +DLEM+ G C Sbjct: 254 YPKTHYVTPRERILQAMEEIKVELADRRQVLLANNKLLEEQRISQRTQFDLEMMNELGYC 313 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL E Sbjct: 314 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVE 373 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G I++Q++RPTGL+DP + Sbjct: 374 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIDQVVRPTGLLDPLI 433 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ Sbjct: 434 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARVRYLHSDIDTV 493 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 494 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 553 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----D 734 RN+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ Sbjct: 554 RNLNGKAILYGDRITASMEKAIGETERRRVKQQTYNEERGIIPQGLNKKIGDILQLGQPS 613 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ +L K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 614 SRGKGKGRGGKVADPNNYHALPPKALDQKIRELESKMYTHAQNLEFEQAAELRDQVHQLR 673 >gi|46445808|ref|YP_007173.1| excinuclease ABC subunit B [Candidatus Protochlamydia amoebophila UWE25] gi|81627729|sp|Q6MEV1|UVRB_PARUW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|46399449|emb|CAF22898.1| probable Helicase subunit B of the DNA excision repair complex (excinuclease ABC) [Candidatus Protochlamydia amoebophila UWE25] Length = 673 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/661 (55%), Positives = 471/661 (71%), Gaps = 10/661 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ T++ P GDQP AI QL+ I ++ Q+LLG+TGSGKTFTMA VI +QRP +++ Sbjct: 6 LFQLHTEFEPCGDQPEAINQLVASILQNKRSQVLLGITGSGKTFTMANVIAKVQRPTLIL 65 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK+ SIN++ID+MR Sbjct: 66 AHNKTLAAQLYQEFKAFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDMSINDKIDKMR 125 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SATRSLLER+D I+VSSVSCIYG+GS E Y M + L G + ++L LV+ QYKR Sbjct: 126 LSATRSLLERSDVIIVSSVSCIYGLGSPEYYRGMNLTLSQGQMRRRDDILLHLVEMQYKR 185 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D IR TFRV GD ++IFP++ ED+A RV MFG++IE+ISE PLTG+ R + +I I Sbjct: 186 NDFEFIRSTFRVRGDVLDIFPAYEEDLAIRVEMFGDEIEQISEIDPLTGKVKRRIASITI 245 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +SH+VTP AM+ I+ EL R E E + LE +R++QR YDLEML+ G+C Sbjct: 246 YPSSHHVTPEEIRLKAMETIRAELDERRQFYETEKKYLELERIQQRTMYDLEMLKEVGTC 305 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + IENYSR+ + R PG PPP L +Y P D LL +DESH T+PQ+ M+ GD RK TL + Sbjct: 306 KGIENYSRHFSMRQPGAPPPCLLDYFPSDYLLVIDESHQTLPQVHAMFNGDRARKQTLVD 365 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS DNRPLRFEE + VSATPG+WE+++ G IVEQ+IRPTGL+DP + Sbjct: 366 FGFRLPSAFDNRPLRFEEVYGRIHQVVYVSATPGAWEVQEAGGEIVEQLIRPTGLLDPII 425 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR A QV+D EI +G R+LLT LTK+++E+LT YL + N++ +Y+HS++ T+ Sbjct: 426 EIRPASGQVDDCLAEIRSHVSKGGRVLLTTLTKKLSEELTTYLNDLNVKAKYLHSDIDTI 485 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++IIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT GRAA Sbjct: 486 ERVQIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAA 545 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---ME----- 731 RN +VI+YAD ITKSI+ ++ T RR Q+ +N++H I P++VK +I ME Sbjct: 546 RNAEGRVIMYADKITKSIKRTLEITESRRALQMRYNEQHGITPRTVKREISVLMESEEDQ 605 Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 V P LE+ L+L + + K +K K+M AA FEEAA RD+++ Sbjct: 606 VTHPTKLEEEIFKAAEEAHHYLTLDEVRLK--IKECEKEMKKAAKEFRFEEAADWRDQMR 663 Query: 792 R 792 R Sbjct: 664 R 664 >gi|118497766|ref|YP_898816.1| excinuclease ABC subunit B [Francisella tularensis subsp. novicida U112] gi|194323738|ref|ZP_03057514.1| excinuclease ABC, B subunit [Francisella tularensis subsp. novicida FTE] gi|118423672|gb|ABK90062.1| excinuclease ABC, subunit B [Francisella novicida U112] gi|194322102|gb|EDX19584.1| excinuclease ABC, B subunit [Francisella tularensis subsp. novicida FTE] Length = 668 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KCAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|194098909|ref|YP_002001974.1| excinuclease ABC subunit B [Neisseria gonorrhoeae NCCP11945] gi|239999193|ref|ZP_04719117.1| excinuclease ABC subunit B [Neisseria gonorrhoeae 35/02] gi|268595020|ref|ZP_06129187.1| UvrABC system protein B [Neisseria gonorrhoeae 35/02] gi|193934199|gb|ACF30023.1| UvrABC system protein B [Neisseria gonorrhoeae NCCP11945] gi|268548409|gb|EEZ43827.1| UvrABC system protein B [Neisseria gonorrhoeae 35/02] Length = 675 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/667 (53%), Positives = 481/667 (72%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDALRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|304413710|ref|ZP_07395154.1| DNA damage recognition component and excinulease of nucleotide excision repair [Candidatus Regiella insecticola LSR1] gi|304283801|gb|EFL92195.1| DNA damage recognition component and excinulease of nucleotide excision repair [Candidatus Regiella insecticola LSR1] Length = 678 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/662 (55%), Positives = 473/662 (71%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + PSGDQP+AI QL +G+ + Q LLGVTGSGKTFT+A VI MQ+P +++A Sbjct: 12 FQLHASFEPSGDQPSAIFQLKEGLENGLAHQTLLGVTGSGKTFTVANVIADMQKPTLILA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+INE I++MR Sbjct: 72 PNKTLAAQLYGEMKVFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINEHIEQMRL 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +MI+ L G ++Q+E+L L + QYKR Sbjct: 132 SATKALLERQDVIVVASVSAIYGLGDPDRYLKMILHLTNGMIIDQREILRCLAELQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ A RV +F N++E +S F PLTGQ ++ + IY Sbjct: 192 DQVFQRGTFRVRGEVIDIFPAESSKQAVRVELFDNEVERLSLFDPLTGQFLQQITRCTIY 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY TPR + ++ IK EL+ R L +LLE QRL QR +D+EM+ G C Sbjct: 252 PKTHYATPRECILQMIEEIKVELQQRRTLLLANNKLLEEQRLTQRTQFDIEMINELGYCS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G+PPPTLF+Y+P + LL VDESHVTIPQI MY+GD RK L EY Sbjct: 312 GIENYSRYLSGRAAGDPPPTLFDYLPANGLLIVDESHVTIPQIGAMYKGDSSRKENLVEY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATP +EL++ G ++EQ++RPTGL+DP +E Sbjct: 372 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPNQYELDKSSGKVIEQLVRPTGLLDPVIE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ EI RIL+T LTKRMAEDLT+YL E+ RVRY+HS++ T+E Sbjct: 432 VRPATIQVDDLLSEIRQRVLINERILVTTLTKRMAEDLTQYLQEQGERVRYLHSDIDTVE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FD+LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 492 RIEIIRDLRLGHFDILVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ P Sbjct: 552 NLNGKAILYGDKITSSMEKAIQETERRRAKQKAYNEEKGIIPQGLNKKIEDILQLGQPYS 611 Query: 738 LEDAATTNI-SIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + + +++A Q L+ + K H L +M++ A NL FE+AA +RD++ R Sbjct: 612 SGKEKKSGLKAMEAANHYQALTPQALEQKIH--ELEAKMYICAQNLEFEQAASLRDQVHR 669 Query: 793 LK 794 ++ Sbjct: 670 MR 671 >gi|255065871|ref|ZP_05317726.1| excinuclease ABC subunit B [Neisseria sicca ATCC 29256] gi|255049782|gb|EET45246.1| excinuclease ABC subunit B [Neisseria sicca ATCC 29256] Length = 675 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/671 (53%), Positives = 482/671 (71%), Gaps = 21/671 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788 D+ + L K G+ H + L K M AA +L FEEAA +RD Sbjct: 610 --------DSGKGRLKSKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRD 661 Query: 789 EIKRLKSSPYF 799 I+ +K + F Sbjct: 662 RIRGIKENLLF 672 >gi|225023471|ref|ZP_03712663.1| hypothetical protein EIKCOROL_00329 [Eikenella corrodens ATCC 23834] gi|224943820|gb|EEG25029.1| hypothetical protein EIKCOROL_00329 [Eikenella corrodens ATCC 23834] Length = 675 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVVRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ +S ++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 610 DGGKGRLKGKNKVKVSEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEN 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|188534388|ref|YP_001908185.1| excinuclease ABC subunit B [Erwinia tasmaniensis Et1/99] gi|238689682|sp|B2VBW9|UVRB_ERWT9 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|188029430|emb|CAO97307.1| UvrABC system protein B (Excinuclease ABC subunit B) [Erwinia tasmaniensis Et1/99] Length = 674 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/663 (55%), Positives = 474/663 (71%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLSRGMVIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELVERKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPMKFEEFEGLAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+TVLTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N+N K ILY D IT S+ AI ET RRREKQ HN++H I PQ + +KI ++++ + Sbjct: 545 NLNGKAILYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLA 604 Query: 738 LEDAATTN------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A N + D + L+ + + + L QM A NL FEEAA++RD++ Sbjct: 605 KNKAKPRNMKGRSIVEDDPAHVDLTPQGLQKRIHQLEAQMQQHAQNLEFEEAAQVRDQLH 664 Query: 792 RLK 794 +++ Sbjct: 665 QVR 667 >gi|88859835|ref|ZP_01134474.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas tunicata D2] gi|88817829|gb|EAR27645.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas tunicata D2] Length = 664 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/659 (54%), Positives = 472/659 (71%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+D+ PSGDQP AI QL +G+ + Q LLG TG+GKTFTMA +I + RP I+MA Sbjct: 5 FRLQSDFQPSGDQPTAIKQLCEGLDAGLAHQTLLGATGTGKTFTMANIIHNLNRPTIIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP N VEYFVSYYDYYQPEAYV +DT+IEK++SINE I++MR Sbjct: 65 HNKTLAAQLYGEMKEFFPDNCVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G +SY +M++ LK+G+ V+Q+++L L + QY R Sbjct: 125 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLSELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R T+RV G+ ++IFP+ E A RV MF ++IE +S F PLTG +++ IY Sbjct: 185 DIDFQRATYRVRGEVVDIFPAESETYAIRVEMFDDEIERLSIFDPLTGAVEKHIVRATIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A + IK ELK L K +L+E QR+ QR YD+EM+ G C Sbjct: 245 PKSHYVTPRETILKATEEIKAELKQHREFLLKHNKLVEEQRVAQRTQYDIEMMVELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL+GR PGEPPPTL +Y+P+DSL+ +DESHVT+ QI MY+GD RK L EY Sbjct: 305 GVENYSRYLSGRAPGEPPPTLLDYLPDDSLMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS MDNRPL+F+E+ + P TI VSATPG +E+ + G + EQ+IRPTGL+DP +E Sbjct: 365 GFRMPSAMDNRPLKFDEFEAIAPQTIYVSATPGEYEITRSCGEVAEQVIRPTGLLDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + R+L+T LTKRM+EDLT+YL + ++VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIYKRVELKERVLVTTLTKRMSEDLTDYLADHGVKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 +++ + ILY D ITKS+ AI+ET RRRE Q +N KH P ++++K+ +++D + Sbjct: 545 HLSGRAILYGDKITKSMAAAIEETERRREIQHAYNIKHGKVPMALQKKVTDIMDVGTTVT 604 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E N DA LS + +K L +M A L FE+AA++RD+I+ L+ S Sbjct: 605 SEQMTAVN---DASYAVLSAGQIAEKIKKLESKMMQHARELEFEKAAQVRDQIQHLQHS 660 >gi|169826762|ref|YP_001696920.1| excinuclease ABC subunit B [Lysinibacillus sphaericus C3-41] gi|168991250|gb|ACA38790.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Lysinibacillus sphaericus C3-41] Length = 659 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/654 (54%), Positives = 475/654 (72%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P ++MA Sbjct: 4 FDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+GS E Y +M+V ++ G +E+ +LL LV QY+R Sbjct: 124 SATSALFERDDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + + E + I+ Sbjct: 184 DVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL L E +LLEAQRLEQR YDLEM+ G C Sbjct: 244 PASHFVTREEKMRKAIENIEKELEDRLALLRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED LL VDESHVT+PQ+ GMY GD RK L E+ Sbjct: 304 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +ELE +I +QIIRPTGL+DP ++ Sbjct: 364 GFRLPSALDNRPLRFEEYEARVHQAIYVSATPGPYELEHTPEMI-QQIIRPTGLLDPLID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ DEI + R+L+T LTK+M+EDLT YL E ++V Y+HSE+KTLE Sbjct: 423 VRPIEGQIDNLIDEIQDRIARDERVLVTTLTKKMSEDLTAYLKEMGLKVEYLHSEIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LR G +DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +T S++ A+DET RRR Q+ +N++H I PQ++ +KI EVI + + Sbjct: 543 NANGHVIMYADHVTDSMKKALDETKRRRALQMAYNEEHGITPQTISKKIPEVIRATQVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ + L+K + + L SL +M AA L+FE AA +RD I LK Sbjct: 603 EEESYVTKATKGKKLTKAEREQLLASLEIEMKEAAKALDFERAAELRDTIFELK 656 >gi|254995406|ref|ZP_05277596.1| excinuclease ABC subunit B [Anaplasma marginale str. Mississippi] Length = 651 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/657 (53%), Positives = 481/657 (73%), Gaps = 12/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++++PSGDQP AI L++GI K Q LLGVTGSGKTFTMA VIE QRPAI++A Sbjct: 4 FKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAIIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH Sbjct: 64 HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G ++ +L LV+ QYK Sbjct: 124 SATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQYKHG 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG+F V GD + +FPSH ED W++S FG++++ I E P +G +E IKI+ Sbjct: 184 N-RYERGSFNVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKIKIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVTPRPTL A+ I++EL ++ ++ +++EA R+ +R +D+EM+ TG+C+ Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G+ G+PP TL +Y+P+D+++F+DESH+T+PQI MY GD RKA L + Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANLINH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPL F EW +PT + VSATPG +EL+Q G+ EQ+IRPTGL+DP Sbjct: 363 GFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDPVCI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A Q+ DV E +G R+L+T LTK+MAE+LTEY+ E I+V Y+HS+VKTLE Sbjct: 423 VKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII DLRLG DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ + + Sbjct: 543 NVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPV---------QT 593 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + +++S A+ + L+K+M L A+NL+FE A IR+EIKRL + Sbjct: 594 SLSERVGSSRKKVSRDTNTDPANRDIVELQKEMLLCAENLDFERAVEIRNEIKRLTA 650 >gi|222475602|ref|YP_002564019.1| excinuclease ABC subunit B (uvrB) [Anaplasma marginale str. Florida] gi|255004725|ref|ZP_05279526.1| excinuclease ABC subunit B [Anaplasma marginale str. Virginia] gi|254764898|sp|B9KH59|UVRB_ANAMF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|222419740|gb|ACM49763.1| excinuclease ABC subunit B (uvrB) [Anaplasma marginale str. Florida] Length = 651 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/657 (53%), Positives = 481/657 (73%), Gaps = 12/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++++PSGDQP AI L++GI K Q LLGVTGSGKTFTMA VIE QRPAI++A Sbjct: 4 FKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAIIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH Sbjct: 64 HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G ++ +L LV+ QYK Sbjct: 124 SATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQYKHG 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG+F V GD + +FPSH ED W++S FG++++ I E P +G +E IKI+ Sbjct: 184 N-RYERGSFSVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKIKIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVTPRPTL A+ I++EL ++ ++ +++EA R+ +R +D+EM+ TG+C+ Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G+ G+PP TL +Y+P+D+++F+DESH+T+PQI MY GD RKA L + Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANLINH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPL F EW +PT + VSATPG +EL+Q G+ EQ+IRPTGL+DP Sbjct: 363 GFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDPVCI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A Q+ DV E +G R+L+T LTK+MAE+LTEY+ E I+V Y+HS+VKTLE Sbjct: 423 VKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII DLRLG DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ + + Sbjct: 543 NVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPV---------QT 593 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + +++S A+ + L+K+M L A+NL+FE A IR+EIKRL + Sbjct: 594 SLSERVGSSRKKVSRDTNTDPANRDIVELQKEMLLCAENLDFERAVEIRNEIKRLTA 650 >gi|188590418|ref|YP_001922476.1| excinuclease ABC subunit B [Clostridium botulinum E3 str. Alaska E43] gi|238689646|sp|B2UZZ0|UVRB_CLOBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|188500699|gb|ACD53835.1| excinuclease ABC, B subunit [Clostridium botulinum E3 str. Alaska E43] Length = 657 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/655 (54%), Positives = 475/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +LK I + Q LLGVTGSGKTFTMA +IE +QRP +++A Sbjct: 4 FKIHSKFKPTGDQPKAIETILKSIKKGNEFQTLLGVTGSGKTFTMANIIEKLQRPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G E+ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++I PS R+ FG++I+ I EF LTG + + I+ Sbjct: 184 DIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTILGERNHVLIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + T+ ++ I+ EL+ RL EL + +LLEAQRL QR +D+EM+ G C Sbjct: 244 PASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ + VSATP +ELE Q I EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ + Q++D+Y EI +G RIL+T LTKRMAEDLT+Y+ E ++ YMHS++ T+E Sbjct: 423 IKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMIELGVKATYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG++DVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ ++I+ + + Sbjct: 543 NSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T I+A + SL+KK+ K +K ++M LAA NL FE AA++RDEI+ LK Sbjct: 603 ES-TEYGIEATK-SLTKKEVKKLIKEYTEEMMLAAKNLQFERAAQLRDEIEELKG 655 >gi|254374576|ref|ZP_04990057.1| DNA excision repair enzyme [Francisella novicida GA99-3548] gi|151572295|gb|EDN37949.1| DNA excision repair enzyme [Francisella novicida GA99-3548] Length = 668 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/660 (54%), Positives = 478/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI + + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVDGIDTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +KI+++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|298368934|ref|ZP_06980252.1| excinuclease ABC subunit B [Neisseria sp. oral taxon 014 str. F0314] gi|298282937|gb|EFI24424.1| excinuclease ABC subunit B [Neisseria sp. oral taxon 014 str. F0314] Length = 675 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/663 (53%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + +++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669 Query: 797 PYF 799 F Sbjct: 670 LLF 672 >gi|146329703|ref|YP_001209468.1| excinuclease ABC subunit B [Dichelobacter nodosus VCS1703A] gi|146233173|gb|ABQ14151.1| excinuclease ABC, B subunit [Dichelobacter nodosus VCS1703A] Length = 669 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/656 (54%), Positives = 465/656 (70%), Gaps = 1/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ DY P+GDQ AI QLL G+ + Q LLGVTGSGKTFTMA VI RP +++A Sbjct: 6 FQLVADYAPAGDQAPAIEQLLSGLDAGLAKQTLLGVTGSGKTFTMANVIARANRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 66 PNKTLAAQLYGEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D ++V+SVS IYG+G Y +M++ + G ++Q+ LLS L + QY R Sbjct: 126 SATKAILERRDTVIVASVSAIYGLGDPREYLKMLLHVTRGSQIDQRSLLSHLAELQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D ++RGTFRV GD I+I P+ + A R+++F +++E I F PLTG I +V + IY Sbjct: 186 DTQLLRGTFRVRGDVIDIMPAEAVEHAVRIALFDDEVERIQYFDPLTGAVIADVPRVSIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T R L A+ IK EL R +L + +LLEAQRL QR +DLEM+ G C Sbjct: 246 PKTHYATTRDRLLAAIDEIKAELHERCAQLRAQNKLLEAQRLAQRTQFDLEMIMELGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTL +Y+P D+LL +DESHVT+PQ+ GMYRGD RK TL + Sbjct: 306 GIENYSRYLSGRAAGEPPPTLHDYLPADALLLIDESHVTLPQLHGMYRGDRSRKETLVAH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + P TI +SATP +E EQ G IVEQ++RPTGL+DP VE Sbjct: 366 GFRLPSALDNRPLRFEEFEAISPQTIYISATPSDYEREQS-GQIVEQLVRPTGLLDPRVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+DV EI + R+L+T LTK+M+EDLT++L E+ I VRYMHS++ T+E Sbjct: 425 VRPVAQQVDDVLAEIQRRRAKNERVLITTLTKKMSEDLTDFLQEQGIAVRYMHSDIHTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG DVLVGINLLREGLDIPE LVAI DADKEGFLR + +LIQTIGRAAR Sbjct: 485 RMEIIRDLRLGVIDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRGERALIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ ILYAD +T+S++ A+ ET RRREKQ N++H I PQ++++KI ++++ Sbjct: 545 HVDGMAILYADHVTQSMEKALTETQRRREKQTAFNEQHGIVPQTIQKKITDIMEGAHRVS 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + + S K ++ L K M AA +L FE AA IRD IK L+ + Sbjct: 605 EKKTTRTPSEETFSSDPKVIIKEIEQLEKAMLAAARDLEFERAAEIRDRIKTLEKA 660 >gi|258510424|ref|YP_003183858.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477150|gb|ACV57469.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 663 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/653 (55%), Positives = 475/653 (72%), Gaps = 1/653 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD P GDQP AI L+ G++S + Q LLGVTGSGKTFTMA +I + RP +V+A Sbjct: 8 FELVTDMKPQGDQPQAIEALVDGVYSGLRHQTLLGVTGSGKTFTMANIIAEVNRPTLVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH Sbjct: 68 HNKTLAAQLAAEFRAFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDAKINDEIDKLRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++LERND +VV+SVS IYG+G+ E Y ++ L++G +++ ++L LV QY R Sbjct: 128 SATAAILERNDVLVVASVSAIYGLGNPEEYRHHVLSLRVGAVMDRNQMLRKLVDMQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A RV +FG++I+ ISE LTG+ + ++ Sbjct: 188 DINFTRGTFRVRGDVVEIFPASRDENAIRVELFGDEIDRISEINVLTGEVVARRSHFSVF 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R L A++ I+ EL+ RL EL +G+LLEAQRLEQR YD+EM+ G C Sbjct: 248 PASHYVTSRERLERAIERIRAELEERLAELRAQGKLLEAQRLEQRTHYDIEMMLEMGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GEPP TL +Y P L F+DESHVTIPQ+ GMY GD RK TL E+ Sbjct: 308 GIENYSRHLEGREAGEPPYTLLDYFPPGFLTFIDESHVTIPQLRGMYNGDRSRKLTLIEH 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATPG +E +Q Q IVEQIIRPTGLVDP + Sbjct: 368 GFRLPSAADNRPLKFEEFERAVGQCIYVSATPGPYE-QQHQQRIVEQIIRPTGLVDPEIH 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E I+VRY+HS++KT+E Sbjct: 427 VRPVKGQIDDLVGEIRERIRRDERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSDIKTIE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLR G FDVLVGINLLREGLD+PE LVAILD DKEGFLRS TSLIQTIGRAAR Sbjct: 487 RMVILRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDTDKEGFLRSHTSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTIT+S+++AI+ET RRR+KQ+ +N++H I PQ+V++ + +VI+ + + Sbjct: 547 NANGTVIMYADTITESMRIAIEETERRRQKQIAYNREHGITPQTVRKAVRDVIESTKVAE 606 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + +++ + LS ++ K + L ++M AA L FE AA +RD I L Sbjct: 607 SEEDYVAVAEKAQKLSGRERKELIAKLEQEMKAAAKALKFERAAELRDMIMEL 659 >gi|292487696|ref|YP_003530569.1| excinuclease UvrABC subunit B [Erwinia amylovora CFBP1430] gi|292898934|ref|YP_003538303.1| excision nuclease ABC subunit B [Erwinia amylovora ATCC 49946] gi|291198782|emb|CBJ45891.1| excision nuclease ABC subunit B [Erwinia amylovora ATCC 49946] gi|291553116|emb|CBA20161.1| Excinuclease UvrABC subunit B [Erwinia amylovora CFBP1430] gi|312171808|emb|CBX80065.1| Excinuclease UvrABC subunit B [Erwinia amylovora ATCC BAA-2158] Length = 674 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/672 (55%), Positives = 475/672 (70%), Gaps = 27/672 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR L AM+ IKEEL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERLLQAMEEIKEELVERKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ R PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+TVLTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 N+N K ILY D IT S+ AI ET RRREKQ HN++H I PQ + +KI ++++ Sbjct: 545 NLNGKAILYGDKITPSMARAIGETERRREKQQLHNQEHGIVPQGLNKKISDILELGQGLA 604 Query: 735 ------------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 I+ +D A ++S L L K+ + L QM A NL FEE Sbjct: 605 KNKAKPRNMKGRSIVEDDPAFVDLS----PLGLQKR-----IHQLEAQMQQHAQNLEFEE 655 Query: 783 AARIRDEIKRLK 794 AA++RD++ +++ Sbjct: 656 AAQVRDQLHQVR 667 >gi|239815131|ref|YP_002944041.1| excinuclease ABC subunit B [Variovorax paradoxus S110] gi|239801708|gb|ACS18775.1| excinuclease ABC, B subunit [Variovorax paradoxus S110] Length = 705 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/661 (54%), Positives = 479/661 (72%), Gaps = 4/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI L++G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 33 FELFQPYPPAGDQPKAIDGLVEGVLDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 92 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR Sbjct: 93 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 152 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S+LER D ++V++VS IYGIG+ E Y+QM +++GD + Q++++ L++ QY R Sbjct: 153 SATKSVLERRDTVIVATVSAIYGIGTPEDYTQMRFIMRVGDQIGQRDVIGRLIRMQYTRN 212 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD+I++FP+ ++A R+ +F ++IE + F PLTG+ + + +Y Sbjct: 213 EQDFSRGTFRVRGDTIDVFPAEHSELAIRIELFDDEIETLQLFDPLTGRIRQKIPRFTVY 272 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR + +A++ IK EL RL E +G+L+EAQRLEQR +DLEML G C+ Sbjct: 273 PSSHYVTPRDKVLSAVETIKIELAERLKEFVSQGKLVEAQRLEQRTRFDLEMLAEIGHCK 332 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L+G PGEPP TL +Y+P+D+L+F+DESH + Q+S MY GD RK TL EY Sbjct: 333 GIENYTRHLSGAAPGEPPATLTDYLPKDALMFLDESHQMVGQLSAMYNGDRARKTTLVEY 392 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ I VSATP +E + G +VEQ++RPTGL+DP VE Sbjct: 393 GFRLPSALDNRPLKLEEFETRMRQCIFVSATPAQYEKDHA-GNVVEQLVRPTGLIDPEVE 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV EI + + R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+E Sbjct: 452 VRPATHQVDDVLGEIRIRVDKNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDTVE 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 512 RVEILRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD +T S++ AI ET RRR +Q+ +N+ + I P+S+ +++ ++ID + E Sbjct: 572 NLNGKAILYADRMTDSMKKAIGETERRRARQIAYNEANGITPRSIVKQVRDLIDGVYSEK 631 Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 +D A+ +S+K +K L K M A NL FE+AAR+RD++ L+ Sbjct: 632 TGKEMAKLDLERAKVEDMSEKDIAREIKRLEKLMMEHARNLEFEKAARVRDQLALLREQA 691 Query: 798 Y 798 + Sbjct: 692 F 692 >gi|241668748|ref|ZP_04756326.1| excinuclease ABC subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877279|ref|ZP_05249989.1| excinuclease ABC subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843300|gb|EET21714.1| excinuclease ABC subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 668 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/660 (54%), Positives = 477/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L++GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLIVA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K + + I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIETISVIDSLTSKKTKTLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + + ++ IK ELK R+ E+EG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q VEQ+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + RIL+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS++ A+DET RRR+ Q EHNKK+NI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMKKAMDETLRRRQLQDEHNKKNNITPKTIIKSIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNSRLKVDDVDVSAILGMTEASKVIKALEKRMRAYAKELEFEQATAIRDKITEIK 662 >gi|251780462|ref|ZP_04823382.1| excinuclease ABC, B subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084777|gb|EES50667.1| excinuclease ABC, B subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 657 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +LK I + Q LLGVTGSGKTFTMA +IE +QRP +++A Sbjct: 4 FKIHSKFKPTGDQPKAIETILKSIKKGNEFQTLLGVTGSGKTFTMANIIEKLQRPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G E+ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++I PS R+ FG++I+ I EF LTG + + I+ Sbjct: 184 DIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTILGERNHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + T+ ++ I+ EL+ RL EL + +LLEAQRL QR +D+EM+ G C Sbjct: 244 PASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ + VSATP +ELE Q I EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ + Q++D+Y EI +G RIL+T LTKRMAEDLT+Y+ E ++ YMHS++ T+E Sbjct: 423 IKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMSELGVKATYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG++DVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ ++I+ + + Sbjct: 543 NSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T I+ + SL+KK+ K +K ++M LAA NL FE AA++RDEI+ LK Sbjct: 603 ES-TEYGIETTK-SLTKKEVKKLIKEYTEEMMLAAKNLQFERAAQLRDEIEELKG 655 >gi|317497023|ref|ZP_07955351.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA] gi|291558945|emb|CBL37745.1| excinuclease ABC, B subunit [butyrate-producing bacterium SSC/2] gi|316895683|gb|EFV17837.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA] Length = 662 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/664 (54%), Positives = 482/664 (72%), Gaps = 5/664 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L KG + + LLGVTGSGKTFTMA +I+ + +P +++A Sbjct: 4 FELVSEYEPTGDQPQAIEKLTKGFQDGNQFETLLGVTGSGKTFTMANIIQNLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 64 HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVVSSVSCIYGIGS ESYS+M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKESYSEMMISLRPGMIKDRDEVIDDLINIQYVRS 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI P + A RV FG++I+ I EF LTG+ R++ + I+ Sbjct: 184 ELDFKRGTFRVKGDVLEILPVSTFEDAVRVEFFGDEIDRIVEFDVLTGEVKRSLNFVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A+K IKEEL ++ ++ +L+EAQR+ +R +D+EML TG C Sbjct: 244 PASHYVVPQEQIERAIKGIKEELAEQVTYFKEHDQLIEAQRIAERTNFDIEMLRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+PP TL ++ +D L+ +DESH+T+PQI GMY GD RK+TL ++ Sbjct: 304 GIENYSRHLAGLEPGQPPSTLIDFFGDDFLMIIDESHITVPQIGGMYAGDQSRKSTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATPG +E E+ + + EQIIRPTGL+DP ++ Sbjct: 364 GFRLPSAKDNRPLEFGEFEQKIDQMLFVSATPGKYE-EEHELLRAEQIIRPTGLLDPAID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ +G ++L+T LTKRMAE+LT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLLGEIHKETDKGNKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RIEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+ AI ET RRRE Q E+NK+H I PQ++K+ I ++I + Sbjct: 543 NSEGHVIMYADHMTDSMHAAITETERRREIQDEYNKEHGITPQTIKKDIRDLIKISDEHE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T D + S+SKK+ K ++ L K+M+ AA LNFE AA++RDE+K K + +Q Sbjct: 603 EETGGYEKDME--SMSKKELKEVIERLSKKMNQAAAELNFELAAQLRDELKEFKIA--YQ 658 Query: 801 GLDD 804 DD Sbjct: 659 EYDD 662 >gi|261363659|ref|ZP_05976542.1| excinuclease ABC subunit B [Neisseria mucosa ATCC 25996] gi|288568201|gb|EFC89761.1| excinuclease ABC subunit B [Neisseria mucosa ATCC 25996] Length = 672 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/662 (53%), Positives = 481/662 (72%), Gaps = 5/662 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ + +++ + L K M AA +L FEEAA +RD I+ +K + Sbjct: 610 DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEN 669 Query: 797 PY 798 + Sbjct: 670 LF 671 >gi|312883745|ref|ZP_07743465.1| excinuclease ABC subunit B [Vibrio caribbenthicus ATCC BAA-2122] gi|309368595|gb|EFP96127.1| excinuclease ABC subunit B [Vibrio caribbenthicus ATCC BAA-2122] Length = 676 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/668 (54%), Positives = 482/668 (72%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QLL+G+ S Q LLGVTGSGKTFT+A VI + QRPAI++A Sbjct: 5 FDLVSEYSPAGDQPQAIEQLLEGLESGLAHQTLLGVTGSGKTFTLANVIASAQRPAILLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V+SVS IYG+G ESY +M++ ++ GD + Q+E+L L + QY R Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHIRRGDYINQREILLRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379 D+ RG FRV G+ I+IFP+ E A R+ MF ++++ IS F PLTG K R++ I Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESEQDAVRIEMFDDEVDCISIFDPLTGVVKQRDLARYTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELSARRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E Sbjct: 305 SGIENYSRYLSGRLEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ L P TI VSATPG++ELE+ I +Q++RPTGL+DP + Sbjct: 365 FGFRLPSALDNRPLKFDEFESLAPQTIFVSATPGNYELEKSGSDIADQVVRPTGLLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI L +++ R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+ Sbjct: 425 EVRPVSTQVDDLLSEIRLRSKKDERVLVTTLTKRMAEDLTEYLNEHDVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ K ILYAD T S+ AI ET RRR KQ +N++ I P+++K I ++++ L Sbjct: 545 RNISGKAILYADRHTNSMNRAIGETNRRRLKQQAYNEEIGIVPRALKRNIKDIME---LG 601 Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D + +++ + LS+ ++ + + L +M+ A +L FE AA Sbjct: 602 DMTKSRSQRESKVVPLSQVAEPTVGYQNMSPQQLEKEIAKLETEMYQHAQDLEFELAADK 661 Query: 787 RDEIKRLK 794 RD+I L+ Sbjct: 662 RDKIDTLR 669 >gi|56417238|ref|YP_154312.1| excinuclease ABC subunit B [Anaplasma marginale str. St. Maries] gi|81821246|sp|Q5P9H3|UVRB_ANAMM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56388470|gb|AAV87057.1| excinuclease ABC subunit B [Anaplasma marginale str. St. Maries] Length = 651 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/657 (53%), Positives = 480/657 (73%), Gaps = 12/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++++PSGDQP AI L++GI K Q LLGVTGSGKTFTMA VIE QRPAI++A Sbjct: 4 FKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAIIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH Sbjct: 64 HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G ++ +L LV+ QYK Sbjct: 124 SATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQYKHG 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG F V GD + +FPSH ED W++S FG++++ I E P +G +E IKI+ Sbjct: 184 N-RYERGNFSVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKIKIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVTPRPTL A+ I++EL ++ ++ +++EA R+ +R +D+EM+ TG+C+ Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G+ G+PP TL +Y+P+D+++F+DESH+T+PQI MY GD RKA L + Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANLINH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPL F EW +PT + VSATPG +EL+Q G+ EQ+IRPTGL+DP Sbjct: 363 GFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDPVCI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A Q+ DV E +G R+L+T LTK+MAE+LTEY+ E I+V Y+HS+VKTLE Sbjct: 423 VKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII DLRLG DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ + + Sbjct: 543 NVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPV---------QT 593 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + +++S A+ + L+K+M L A+NL+FE A IR+EIKRL + Sbjct: 594 SLSERVGSSRKKVSRDTNTDPANRDIVELQKEMLLCAENLDFERAVEIRNEIKRLTA 650 >gi|157369560|ref|YP_001477549.1| excinuclease ABC subunit B [Serratia proteamaculans 568] gi|189037998|sp|A8GBD1|UVRB_SERP5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157321324|gb|ABV40421.1| excinuclease ABC, B subunit [Serratia proteamaculans 568] Length = 670 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/659 (55%), Positives = 468/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI++L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPAGDQPQAISKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I++FP+ +++A R+ +F ++E +S F PLTGQ + V+ IY Sbjct: 185 DQAFQRATFRVRGEVIDVFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + AM+ IK +L R L +LLE QRL QR +DLEM++ G C Sbjct: 245 PKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMKELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+P D LL VDESHVTIPQI MY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRKEGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N+N K ILY D IT S+ AI ET RRR KQ N+++ I PQ + +K+ +V+ P Sbjct: 545 NLNGKAILYGDRITDSMARAISETERRRAKQQAFNEENGIVPQGLNKKVSDVLQLGKPGN 604 Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + Q +L+ K ++ L QM+ A NL FE AA +RDEI +L+ Sbjct: 605 RGKGRGKGKAAENVGQYKNLTPKALDQKIRELEAQMYTHAQNLEFELAAGLRDEIHQLR 663 >gi|332686176|ref|YP_004455950.1| excinuclease ABC subunit B [Melissococcus plutonius ATCC 35311] gi|332370185|dbj|BAK21141.1| excinuclease ABC subunit B [Melissococcus plutonius ATCC 35311] Length = 664 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/656 (55%), Positives = 475/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL++GI EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FELVSKYQPQGDQPEAIKQLIQGIDQGEKAQVLLGATGTGKTFTISNVIKEINKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+G + YS+ +V L+ G +E+ +LL+SL+ Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGDPKEYSEQVVSLRKGMEIERNQLLNSLIDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++IE I E LTG+ I ++E I I+ Sbjct: 190 DIDFQRGRFRVHGDIVEIFPTSRDEHAIRVEFFGDEIERIREVDALTGELIDDLEHIAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A++ I+ EL RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNEEQMEKAIQRIQTELDERLTTLRNENKLLEAQRLEQRTNYDVEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ VDESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMEGREEGEPPYTLLDFFPDDFLIVVDESHVTMPQIRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPGS+E EQ +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLQLEEFEKHVNQIVYVSATPGSYEEEQTDK-VVQQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQIDDLVGEINERVAKDQRVFVTTLTKKMAEDLTDYLRELGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVL+GINLLREGLD+PE L+AILDADKEG LRS+ SL+QTIGRAAR Sbjct: 489 RTEIIRNLRLGEFDVLIGINLLREGLDVPEVSLIAILDADKEGLLRSERSLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+Y D IT S+Q AIDET RRR Q ++NK+H I P+++ ++I ++I D Sbjct: 549 NEEGKVIMYGDKITDSMQKAIDETARRRTIQEDYNKQHGIVPKTIIKEIRDLISISKTTD 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + S+D LS ++ K L L K+M AA L+FE AA +RD I LK+S Sbjct: 609 NKTIS-SMDTSYSKLSHQEKKDLLMKLEKEMRDAAKVLDFETAATLRDTILELKAS 663 >gi|323693174|ref|ZP_08107392.1| UvrABC system protein B [Clostridium symbiosum WAL-14673] gi|323502657|gb|EGB18501.1| UvrABC system protein B [Clostridium symbiosum WAL-14673] Length = 662 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 472/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+KG + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEFKPTGDQPQAIEALVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 123 SATAALSERQDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEIIHKLIDIQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD +EI+P++ A+RV FG++++ I+E LTG+ + I I+ Sbjct: 183 DMDFKRGSFRVRGDVLEIYPAYSAGDAYRVEFFGDEVDRIAEIDTLTGEVKSQLGHIAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV PR + A I EELK+R+ E + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVIPREKMEQAATNILEELKVRVAEFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PE+ L+ VDESH+T+PQ+ GMY GD RK TL + Sbjct: 303 GIENYSRHLTGSLPGEPPCTLIDYFPEEFLIIVDESHITLPQVRGMYAGDRSRKQTLVNF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E E+ + + EQIIRPTGL+DPP+E Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQIMFVSATPSKYE-EEHEMLRTEQIIRPTGLLDPPIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++G ++L+T LTKRMAEDL++Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNREVEKGFKVLITTLTKRMAEDLSDYMREVGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 482 RAEIIRDMRLNVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S++ AI ET RRR Q +N++H I P ++K+ + ++I + Sbjct: 542 NSEGHVIMYADNITDSMRAAIVETERRRRIQQAYNEEHGITPTTIKKAVRDLITISQAAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ D + S+ KK+ + +K L K+MH AA LNFEEAA +RD + +K Sbjct: 602 GITNEVTKDPE--SMDKKELEKLIKELMKKMHKAAAELNFEEAAALRDRMTEIK 653 >gi|240128477|ref|ZP_04741138.1| excinuclease ABC subunit B [Neisseria gonorrhoeae SK-93-1035] gi|268686866|ref|ZP_06153728.1| UvrB [Neisseria gonorrhoeae SK-93-1035] gi|268627150|gb|EEZ59550.1| UvrB [Neisseria gonorrhoeae SK-93-1035] Length = 675 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/667 (53%), Positives = 480/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQTI 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRIGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|240013900|ref|ZP_04720813.1| excinuclease ABC subunit B [Neisseria gonorrhoeae DGI18] gi|240121469|ref|ZP_04734431.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID24-1] gi|293398869|ref|ZP_06643034.1| excinuclease ABC, B subunit [Neisseria gonorrhoeae F62] gi|291610283|gb|EFF39393.1| excinuclease ABC, B subunit [Neisseria gonorrhoeae F62] Length = 675 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/667 (53%), Positives = 480/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA L++G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLIEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQTI 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I+ Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|134302179|ref|YP_001122148.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis WY96-3418] gi|134049956|gb|ABO47027.1| excinuclease ABC, B subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 668 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/660 (53%), Positives = 478/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+M E+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|153854478|ref|ZP_01995756.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814] gi|149753004|gb|EDM62935.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814] Length = 667 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 476/656 (72%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A Sbjct: 9 FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NE+ID++R Sbjct: 69 HNKTLAAQLYGEFKEMFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNEEIDKLRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IV++SVSCIYG+G E++ QM+V L+ G ++ E+L L+ QY R Sbjct: 129 SATAALIERRDVIVIASVSCIYGLGEPENFEQMMVSLRPGMEKDRDEVLRQLIDIQYDRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P+ D A RV FG++I+ ISE LTG+ + I I+ Sbjct: 189 DMDFKRGTFRVRGDTVEIVPADRGDTAIRVEFFGDEIDRISEIDMLTGEVKNTLNHIAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A++ I+ EL+ ++ + EG+LLEAQR+ +R +D+EM+ TG C Sbjct: 249 PASHYVVPKERMEKAIRNIEIELEEQVKYFKSEGKLLEAQRIAERTNFDIEMMRETGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD RK TL EY Sbjct: 309 GIENYSRHLAGLAPGQPPNTLMDYFPDDFIIMIDESHKTVPQIGGMYHGDQSRKRTLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +E E+ + + EQ+IRPTGL+DP VE Sbjct: 369 GFRLPSALDNRPLSFDEFESKIDQVMFVSATPGKYE-EEHELLRAEQVIRPTGLLDPEVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N +IL+T LTKRMAEDLT+Y+ E IRVRY+HS++ TLE Sbjct: 428 VRPVEGQIDDLIGEVNKEIANKHKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 488 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S++ A+DET RRRE Q+ +N++H I P+++++ + ++I + + Sbjct: 548 NAEGHVIMYADTITDSMRAALDETQRRREVQMAYNEEHGITPKTIQKAVRDLI--AVSKK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + + ++ S+S+K+ + +K L KQM AA +LNFE AA +RD++ LK + Sbjct: 606 VAASEVQMEKDPESMSEKELEKLIKELEKQMKKAAADLNFEAAAELRDKLIELKKT 661 >gi|293397183|ref|ZP_06641457.1| excision endonuclease subunit UvrB [Serratia odorifera DSM 4582] gi|291420654|gb|EFE93909.1| excision endonuclease subunit UvrB [Serratia odorifera DSM 4582] Length = 670 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/660 (56%), Positives = 472/660 (71%), Gaps = 5/660 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+ Sbjct: 4 LFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 124 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D R TFRV G+ I+IFP+ +++A RV +F ++E +S F PLTGQ + V+ I Sbjct: 184 NDQAFQRATFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQVEQVVQRFTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y SHYVTPR + AM+ IK +L R L +LLE QRL QR +DLEM+ G C Sbjct: 244 YPKSHYVTPRERILQAMEEIKVDLAERRQVLLANNKLLEEQRLTQRTQFDLEMMNELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL E Sbjct: 304 SGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G +++Q++RPTGL+DP V Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPQV 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ Sbjct: 424 EVRPVTTQVDDLLSEIRKRVAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----P 735 RN+N K ILY D IT S+ AI ET RRR KQ +N+++ I PQ + +KI +++ Sbjct: 544 RNLNGKAILYGDRITDSMARAIGETERRRAKQQAYNQENGIVPQGLNKKIADILQLGQPS 603 Query: 736 ILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + +A Q L+ K ++ L QM+ A NL FE+AA +RDEI +L+ Sbjct: 604 SRGKGKGKSKAAENATQYQQLTPKALDQKIRELEAQMYTHAQNLEFEQAAALRDEIHQLR 663 >gi|332975216|gb|EGK12116.1| excision endonuclease subunit UvrB [Kingella kingae ATCC 23330] Length = 679 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/666 (53%), Positives = 474/666 (71%), Gaps = 8/666 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLDGLADGLSSQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ RND I+V++VS IYGIG Y QM++ +K GD ++Q++++++LV QY+R Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDQIDQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD ++++P+ D A R+S+F ++I+ +S F PL+G + V I+ Sbjct: 191 DVDFKRGSFRVRGDVVDVYPAESSDYALRISLFDDEIDRLSLFDPLSGSLHQRVGRYTIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRQRIEFYTNENRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P++++LF+DESHVTI QI MY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPKNAILFIDESHVTIGQIGAMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ P T+ VSATP ++E E G IVEQ++RPTGL+DP + Sbjct: 371 GFRLPSARDNRPLKFHEFERAMPQTVFVSATPAAYEAEHA-GQIVEQVVRPTGLLDPEII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN+ ++G R+L+T LTKRMAE LT+Y E ++VRY+HS++ T+E Sbjct: 430 IRPVGTQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ + +K+ ++ID + + Sbjct: 550 NVNGVAILYADKITDSMKSAIDETERRREKQMKFNEEHGIVPQQINKKVKDLIDGVYNAE 609 Query: 741 AATTNISIDAQQLSL-------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 +++ + L KQM AA +L FEEAA +RD+I+ + Sbjct: 610 TEVLGSLKTKSSKKKASKTEIRTEQDAIDEITRLEKQMQQAARDLQFEEAAVLRDKIRVI 669 Query: 794 KSSPYF 799 K S F Sbjct: 670 KESLLF 675 >gi|212703191|ref|ZP_03311319.1| hypothetical protein DESPIG_01233 [Desulfovibrio piger ATCC 29098] gi|212673457|gb|EEB33940.1| hypothetical protein DESPIG_01233 [Desulfovibrio piger ATCC 29098] Length = 674 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/660 (54%), Positives = 466/660 (70%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L+ + + Q+LLGVTGSGKTFTM VI RPA+V+A Sbjct: 7 FKLHSAYVPTGDQPEAIDSLVANLEAGVPEQILLGVTGSGKTFTMVNVIARCGRPALVLA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++RH Sbjct: 67 PNKTLAAQLYNEFREFFPQNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D I+V+SVSCIYG+GS E Y++MI+ +++G + L++ LV+ QY+R Sbjct: 127 AATHALLTRRDVIIVASVSCIYGLGSPEFYARMIIPVEVGQHMSMDALITRLVEVQYERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EI P++ + A R+ FG+DI+ + E PLTG + V IY Sbjct: 187 DYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDSMREVDPLTGDVLAEVGKTVIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V+ + L I++EL RL + GRL+EAQRLEQR DLEM+E G C Sbjct: 247 PASHFVSAQDNLKRTTADIRQELLERLTAFKASGRLVEAQRLEQRTQLDLEMIEELGYCN 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GEPP L Y PED +LFVDESH+T+PQ+ GM++GD RK TL +Y Sbjct: 307 GIENYSRHLDGRKAGEPPSCLLNYFPEDFILFVDESHITVPQVGGMFKGDRSRKQTLVDY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L + VSATPG +E++Q QGII EQIIRPTGLVDP VE Sbjct: 367 GFRLPSALDNRPLQFDEFRSLLHQVVYVSATPGKYEMDQSQGIISEQIIRPTGLVDPEVE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ E ++G R+L+T LTKRMAEDLTEY + RY+HS++ TLE Sbjct: 427 VRPTKGQMEDLLGECRERIRRGERVLVTTLTKRMAEDLTEYCCNMGVNARYLHSDIDTLE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR LR G+FDVLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQT GRAAR Sbjct: 487 RLQIIRALRQGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTFGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VILYADT+T S++ A+DET RRR KQ +N +H I P+S ++ + +D + ++ Sbjct: 547 NVHGHVILYADTVTASMRAAMDETERRRAKQTAYNTEHGITPRSTRKSLESPLDALYVDT 606 Query: 741 AATT------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++++ S + L+ + A ++ L K+M AA L FE AA +RD I+ L+ Sbjct: 607 SSSSRGKGKGRASRQDDAVPLTAEDTAALVQRLEKEMREAARELEFERAAALRDRIRALR 666 >gi|59801006|ref|YP_207718.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA 1090] gi|75507400|sp|Q5F931|UVRB_NEIG1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|59717901|gb|AAW89306.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA 1090] Length = 675 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/667 (53%), Positives = 479/667 (71%), Gaps = 13/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA L++G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLIEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQTI 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +Q K G+ H + L K M AA +L FEEAA +RD I Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRISN 665 Query: 793 LKSSPYF 799 +K + F Sbjct: 666 IKENLLF 672 >gi|271964484|ref|YP_003338680.1| excinuclease ABC subunit B [Streptosporangium roseum DSM 43021] gi|270507659|gb|ACZ85937.1| excinuclease ABC subunit B [Streptosporangium roseum DSM 43021] Length = 711 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/689 (52%), Positives = 489/689 (70%), Gaps = 26/689 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ TD PSGDQP AIA+L + + + +K +LLG TG+GKT T+A +IE Sbjct: 12 VTDLQRKVAPFEVVTDMTPSGDQPTAIAELERRVKAGDKDNVLLGATGTGKTATVAWLIE 71 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +V+ PNK LAAQ +E + P+NA+EYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 72 RLQRPTLVIQPNKTLAAQFANELREMMPNNAIEYFVSYYDYYQPEAYVPQSDTYIEKDSS 131 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN++++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y + LK+G +E+ LL Sbjct: 132 INDEVERLRHSATNSLLTRRDTIVVASVSCIYGLGTPQEYVDRMTSLKVGQEIERDSLLR 191 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R D+ RGTFRV GD+IEI P + E++A R+ MFG++IE++S +PLTG+ Sbjct: 192 RLVDMQYTRNDLAFTRGTFRVRGDTIEIIPKY-EELAVRIEMFGDEIEKLSTMHPLTGEV 250 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + I+ SHYV + A++ I+ EL L +E++G+LLEAQRL R TYDL Sbjct: 251 ITEDEELYIFPASHYVAGTERMEKAVRGIEAELAQTLETMERQGKLLEAQRLRMRTTYDL 310 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G+C IENYSR++ GR PG P TL +Y PED LL +DESH T+PQI MY GD Sbjct: 311 EMMRQIGTCSGIENYSRHMDGRAPGSAPNTLLDYFPEDFLLVLDESHQTVPQIGAMYEGD 370 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL++EE+ T+ +SATPG++EL + +G +VEQ+IR Sbjct: 371 ASRKRTLVEHGFRLPSAMDNRPLKWEEFLERIDQTVYLSATPGTYELGRSKGDVVEQVIR 430 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ ++Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E IRVR Sbjct: 431 PTGLVDPEVIVKPTKSQIDDLVHEIRTRTEKDERVLVTTLTKKMSEDLTDYLLELGIRVR 490 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL RIE++R+LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TS Sbjct: 491 YLHSEVDTLRRIELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETS 550 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRR KQ +N+ + I+PQ +++KI Sbjct: 551 LIQTIGRAARNVSGQVHMYADRITPSMERAIEETNRRRAKQTAYNEANGIDPQPLRKKIA 610 Query: 731 EVIDPILLEDAATTNI---------------------SIDAQQLSLSKKKGKAHL----K 765 +++D + EDA T + + +++ + +A L + Sbjct: 611 DILDSLNREDADTAQLLGGSGRQQSRGKAPVPGFVVKQVGQHAKAIAGEMPRAQLEALVE 670 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 SL QMH AA +L FE AAR+RDEIK LK Sbjct: 671 SLTDQMHQAATDLQFEVAARLRDEIKELK 699 >gi|254373124|ref|ZP_04988613.1| excinuclease ABC subunit B [Francisella tularensis subsp. novicida GA99-3549] gi|151570851|gb|EDN36505.1| excinuclease ABC subunit B [Francisella novicida GA99-3549] Length = 668 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/660 (53%), Positives = 478/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVDGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESH T+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHATLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEIQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|269213500|ref|ZP_05982104.2| excinuclease ABC subunit B [Neisseria cinerea ATCC 14685] gi|269146269|gb|EEZ72687.1| excinuclease ABC subunit B [Neisseria cinerea ATCC 14685] Length = 746 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/692 (52%), Positives = 489/692 (70%), Gaps = 17/692 (2%) Query: 124 TPHRSWSINNHSKDITF------------FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171 TP +S +H DIT F++ + P+GDQP AIA LL+G+ Q Sbjct: 53 TPAHIFSPTSHVLDITGKIMEVIQYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQ 112 Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 LLGVTGSGKT+TMA VI RPAI+MA NK LAAQLY+E + FFP NAVEYFVSYYDY Sbjct: 113 TLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDY 172 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 YQPEAYVP D +IEK+S+INE I++MR SAT++L+ R+D I+V++VS IYGIG Y Sbjct: 173 YQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQ 232 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 QM++ +K GD++EQ++++++LV QY+R D+ RG+FRV GD I+++P+ + A R+S Sbjct: 233 QMVLSVKEGDTIEQRDIIATLVSIQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRIS 292 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++I+ + F PL+G + V ++ +SHYVTPR T+ A + IKEEL+ R+ Sbjct: 293 LFDDEIDRLDMFDPLSGSLHQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFA 352 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 +E R +E QR+EQR +DLEML G C+ IENYSR+ +G+ GEPPPTL +Y+P+++++ Sbjct: 353 REQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIM 412 Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531 F+DESHVT+ QI GMY+GD RK L +YGFRLPS DNRPL+F E+ + P T+ VSAT Sbjct: 413 FIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSAT 472 Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 P +E E+ G +VEQ++RPTGLVDP + IR TQV+D+ EIN Q+G R+L+T LT Sbjct: 473 PAKYE-EEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLT 531 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 KRMAE LT+Y E I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE Sbjct: 532 KRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEV 591 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711 LVAILDADKEGFLRS SLIQTIGRAARNVN ILYAD IT S++ AIDET RRREKQ Sbjct: 592 SLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQ 651 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL----SKKKGKAHLKSL 767 ++ N++H I PQ +K+++ ++ID + E+ ++ + +++ + L Sbjct: 652 IKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKL 711 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799 K M AA +L FEEAA +RD I+ +K + F Sbjct: 712 EKAMQQAARDLQFEEAAVLRDRIRGIKENLLF 743 >gi|126652449|ref|ZP_01724621.1| excinuclease ABC subunit B [Bacillus sp. B14905] gi|126590720|gb|EAZ84835.1| excinuclease ABC subunit B [Bacillus sp. B14905] Length = 659 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/654 (55%), Positives = 474/654 (72%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P ++MA Sbjct: 4 FDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+GS E Y +M+V ++ G +E+ +LL LV QY+R Sbjct: 124 SATSALFERDDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + + E + I+ Sbjct: 184 DVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL L E +LLEAQRLEQR YDLEM+ G C Sbjct: 244 PASHFVTREEKMRKAIENIEKELEDRLALLRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED LL VDESHVT+PQ+ GMY GD RK L E+ Sbjct: 304 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +ELE +I +QIIRPTGL+DP ++ Sbjct: 364 GFRLPSALDNRPLRFEEYENRVHQAIYVSATPGPYELEHTPEMI-QQIIRPTGLLDPLID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ DEI R+L+T LTK+M+EDLT YL E ++V Y+HSE+KTLE Sbjct: 423 VRPIEGQIDNLIDEIQGRIACDERVLVTTLTKKMSEDLTAYLKEMGLKVEYLHSEIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LR G +DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +T S++ A+DET RRRE Q+ +N++H I PQ++ +KI EVI + + Sbjct: 543 NANGHVIMYADHVTDSMKKALDETKRRRELQMAYNEEHGITPQTISKKIPEVIRATQVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ + L+K + L SL +M AA L+FE AA +RD I LK Sbjct: 603 EEESYVTKATKGKKLTKAERDQLLASLEIEMKEAAKALDFERAAELRDTIFELK 656 >gi|145589676|ref|YP_001156273.1| excinuclease ABC subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048082|gb|ABP34709.1| Excinuclease ABC subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 718 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/671 (54%), Positives = 477/671 (71%), Gaps = 8/671 (1%) Query: 135 SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 +K +TF + + + P+GDQP AI L++GI Q LLGVTGSGKTFTMA VI Sbjct: 40 AKFVTFPDSPYHLYQPFPPAGDQPQAIDALVEGIEDGLTFQTLLGVTGSGKTFTMANVIA 99 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS Sbjct: 100 RTGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSS 159 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE I++MR SAT+SLLER D I+V++VS IYGIG+ Y M++ L+ GD + Q+++L Sbjct: 160 INEHIEQMRLSATKSLLERRDVIIVATVSAIYGIGNPGDYHSMVMTLRPGDKMSQRDILM 219 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L+ QY R + RG FRV GD+I+IFP+ ++A RV +F + +E + F PLTG+ Sbjct: 220 RLIAMQYDRNETDFKRGVFRVRGDTIDIFPAEHNELAVRVELFDDVVESLQFFDPLTGKI 279 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + +Y +SHYVTPR T+ A++ IK EL+ RL E K+G+L+EAQRLEQR +DL Sbjct: 280 RQKIPRFTVYPSSHYVTPRETVLKAIETIKVELRTRLDEFVKDGKLVEAQRLEQRTRFDL 339 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G C+ IENYSR+L+G PGE PPTL +Y+P D+L+F+DESHV I Q++ MY GD Sbjct: 340 EMLNELGFCKGIENYSRHLSGAAPGEAPPTLVDYLPNDALMFLDESHVLIGQLNAMYNGD 399 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F E+ TI VSATP +E + QG +VEQ+ R Sbjct: 400 KSRKHTLVEFGFRLPSAMDNRPLKFTEFETKMRQTIFVSATPADYE-KAHQGQVVEQVAR 458 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP +E+ A TQV+D+ +I+ + R+L+TVLTKRMAE LT+YL + ++VR Sbjct: 459 PTGLVDPEIEVLPASTQVDDLLSQIHERVKVHERVLVTVLTKRMAEQLTDYLSDNGVKVR 518 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ S Sbjct: 519 YVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 578 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV K ILYAD IT S++ A+ ET RRR KQ+ NK H I P+ VK++I Sbjct: 579 LIQTIGRAARNVRGKAILYADRITDSMKRAMGETERRRTKQIAFNKLHGIEPKGVKKRIK 638 Query: 731 EVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 ++ID + + + A+ + +K A +K L KQM+ A NL FE+AA R Sbjct: 639 DIIDGVYDVKEKRHEMQTEQERARYEDMGEKDLAAEIKRLEKQMNSEAKNLEFEKAASTR 698 Query: 788 DEIKRLKSSPY 798 D + ++K + Sbjct: 699 DRLTKVKEMAF 709 >gi|308273879|emb|CBX30479.1| UvrABC system protein B [uncultured Desulfobacterium sp.] Length = 658 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/660 (53%), Positives = 474/660 (71%), Gaps = 8/660 (1%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +DY P GDQP AI L+ G+ S +K Q+LLGVTGSGKTFTMA VIE +PA+V+APNK Sbjct: 2 SDYTPKGDQPNAIESLVSGVLSEKKHQVLLGVTGSGKTFTMANVIEKTGKPALVIAPNKT 61 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQLYSEFK FP NAVEYFVSYYDYYQPEAY+P +DTYI+K+SSIN+ ID++RHSATR Sbjct: 62 LAAQLYSEFKLLFPENAVEYFVSYYDYYQPEAYIPSSDTYIQKDSSINDMIDKLRHSATR 121 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 S+L R D I+++SVSCI+G+G+ E Y M V ++ +++ + L +LV+ QY+R D Sbjct: 122 SVLSRRDVIIIASVSCIFGLGAPEDYLSMRVHVEKNMELDRDKFLKNLVEMQYERNDYDF 181 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RG+FRV GD +EIFP++ ED A R++ FG+++E+I+E PL G + ++ + I+ SH Sbjct: 182 FRGSFRVRGDRVEIFPAYEEDKAIRINFFGDEVEDIAEIDPLKGSILNSLNSATIFPASH 241 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVT + TL A+ I ELK R+ E + +E QR+E+R +D+EM++ G C IEN Sbjct: 242 YVTQKMTLKRAVDSILIELKERIEFFRNEKKYIETQRIEERTHFDVEMMQEIGYCNGIEN 301 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSR+LTGR+PGE PPTL +Y P+D LLF+DESH+T+PQ+ GMY+GD RK TL +GFRL Sbjct: 302 YSRHLTGRSPGEAPPTLLDYFPKDYLLFIDESHITVPQLHGMYKGDRSRKETLVNFGFRL 361 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PS +DNRPLRF+E+ I SATP +ELE+ +G + E I+RPTGL+DP + ++SA Sbjct: 362 PSALDNRPLRFDEFETRTSQVIYASATPADFELEKAKGSVAELIVRPTGLLDPAIHLKSA 421 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 + QV+D+++EI Q+ R+L+T LTKRMAEDLTEY + +I+V Y+HS++ T ER++I Sbjct: 422 KNQVDDLFEEILARIQKNERVLVTTLTKRMAEDLTEYYSDLDIKVSYLHSDIGTFERMQI 481 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR G FDV++GINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAARN+N Sbjct: 482 INDLRKGVFDVIIGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAARNLNG 541 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 +I+Y+D +T S++ AIDET RRR+ Q NKKH I P S+++ I P+ +A+ Sbjct: 542 SIIMYSDVLTNSMKQAIDETNRRRKIQKAFNKKHGITPVSIEKAIT----PLFEYASASD 597 Query: 745 NISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 + D +SK + + + +L K+M AA L+FE+AA +RD I +K F+ Sbjct: 598 KFAADKVSEVISKYESTNNIDEIISNLEKEMKKAAQELDFEKAAELRDNISAIKKKMVFE 657 >gi|94265897|ref|ZP_01289625.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1] gi|93453556|gb|EAT03958.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1] Length = 665 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/653 (55%), Positives = 462/653 (70%), Gaps = 4/653 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +++ P+GDQP AI L +G+ + Q+LLGVTGSGKTFTMA+VI RPA+V+ Sbjct: 1 MFDLVSEFAPAGDQPRAIELLSRGVMAGTPHQVLLGVTGSGKTFTMAQVIAETSRPALVL 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSEFK FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MR Sbjct: 61 APNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDQMR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H ATR+LL R D I+V+SVSCIYG+GS E Y M + L++G+ E+ LV Y+R Sbjct: 121 HGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMNLALQVGEDYPPAEIQRRLVHMLYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV GD +EIFP H +D A RV +FG+ IE I PL G +E + + Sbjct: 181 NDYSFHRGTFRVRGDVVEIFPVHEDDRALRVELFGDTIEAIRVVDPLRGVVHEELEEVTV 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SH+VT + + A+K IK EL RL EL RLLEAQRLEQR +DLEML+ G C Sbjct: 241 FPGSHFVTSKERQDQAIKTIKAELTQRLAELHANKRLLEAQRLEQRTMFDLEMLQELGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ T PG PPPTL +Y P+D LLF DESHV IPQ+ GMYRGD RK TL E Sbjct: 301 HGIENYSRHFTRLPPGAPPPTLLDYFPDDYLLFTDESHVAIPQVRGMYRGDRSRKETLVE 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E++ I VSATPG ELE G +VEQIIRPTGL+DP + Sbjct: 361 YGFRLPSALDNRPLMFDEFSARVHQAIYVSATPGDHELEISGGRVVEQIIRPTGLMDPKI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A++QV+D+ EI AQ+ IL+T LTKRMAEDL EY +RVRY+HS++KTL Sbjct: 421 EVRPAQSQVDDLLAEIRSRAQRDEAILVTTLTKRMAEDLCEYYRNIEVRVRYLHSDIKTL 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+E+IRDLR ++DVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAA Sbjct: 481 QRMELIRDLRRREYDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTCGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + VILY D I+ ++ I ET RRRE Q E+N++H I P +++ KI +++ + + Sbjct: 541 RNAHGMVILYGDKISAAMAATIAETERRREIQAEYNREHGITPATIRSKIKDLMATVYEQ 600 Query: 740 DAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D T + + Q + S+++ + +K L K+M AA L FE+AA +RD Sbjct: 601 DYTTVELPEEGVAEEQPVFRSREELRREIKELEKEMARAARELAFEDAAELRD 653 >gi|28377628|ref|NP_784520.1| excinuclease ABC subunit B [Lactobacillus plantarum WCFS1] gi|254555807|ref|YP_003062224.1| excinuclease ABC subunit B [Lactobacillus plantarum JDM1] gi|300767596|ref|ZP_07077506.1| excision endonuclease subunit UvrB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179788|ref|YP_003923916.1| excinuclease ABC subunit B [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258759|sp|Q88YI8|UVRB_LACPL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|28270461|emb|CAD63363.1| excinuclease ABC, subunit B [Lactobacillus plantarum WCFS1] gi|254044734|gb|ACT61527.1| excinuclease ABC subunit B [Lactobacillus plantarum JDM1] gi|300494581|gb|EFK29739.1| excision endonuclease subunit UvrB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045279|gb|ADN97822.1| excinuclease ABC subunit B [Lactobacillus plantarum subsp. plantarum ST-III] Length = 667 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/665 (53%), Positives = 477/665 (71%), Gaps = 8/665 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 NNH F + +DY P+GDQP AI QL GI S EK Q+LLG TG+GKTFT++ VI Sbjct: 7 NNH------FDLVSDYQPTGDQPQAIQQLTAGIESGEKEQILLGATGTGKTFTISNVIAK 60 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P ++++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+I Sbjct: 61 VNKPTLILSHNKTLAGQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI 120 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N++ID++RHSAT SLLERND IVV+SVS I+G+G Y +V L++G +++ +LL Sbjct: 121 NDEIDKLRHSATSSLLERNDVIVVASVSSIFGLGDPHEYQDHVVSLRVGMEIDRNDLLRK 180 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV Q+ R DI RG FRV GD +EIFP+ +D A RV FG++I+ I E LTG+ + Sbjct: 181 LVDIQFDRNDIDFQRGRFRVHGDVVEIFPASRDDHALRVEFFGDEIDRIREIDALTGEIV 240 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + E + I+ +H++T + A+K I++EL RL EL +G+LLEAQRL+QR TYD+E Sbjct: 241 ADREHVAIFPATHFMTNDAIMEHAIKGIEDELDGRLKELTADGKLLEAQRLKQRTTYDVE 300 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 ML+ G IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD Sbjct: 301 MLKEMGYTSGIENYSRFMDGRKPGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDR 360 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L +YGFRLPS +DNRPL+ EE + +SATPG +E+++ + +V+QIIRP Sbjct: 361 ARKQMLVDYGFRLPSALDNRPLKLEEVEQHINQVVYMSATPGPYEMDRTKH-VVQQIIRP 419 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP +E+R Q++D+ EIN + R+ +T LTK+MAEDLT+Y + I+VRY Sbjct: 420 TGLLDPTIEVRPIMGQIDDLVGEINKRIEVNERVFITTLTKKMAEDLTDYFKDLGIKVRY 479 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS++KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SL Sbjct: 480 LHSDIKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSL 539 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAARN + VI+YADT T S+Q A+DET RRR Q+++N+ H+I P ++K+ I E Sbjct: 540 IQTIGRAARNEHGSVIMYADTTTDSMQAAMDETARRRAVQMKYNEDHHITPHTIKKAIPE 599 Query: 732 VIDPI-LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +I EDA + ++ +++++ + L +QM AA L+FE+AA +RD + Sbjct: 600 LIASTKTTEDAGKKDDFLETDFDDMTREQQLDMISKLEEQMKTAAKKLDFEQAATLRDTV 659 Query: 791 KRLKS 795 LK+ Sbjct: 660 MELKA 664 >gi|323485835|ref|ZP_08091170.1| UvrABC system protein B [Clostridium symbiosum WAL-14163] gi|323400823|gb|EGA93186.1| UvrABC system protein B [Clostridium symbiosum WAL-14163] Length = 662 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/654 (53%), Positives = 472/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+KG + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEFKPTGDQPQAIEALVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 123 SATAALSERQDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEIIHKLIDIQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD +EI+P++ A+RV FG++++ I+E LTG+ + I I+ Sbjct: 183 DMDFKRGSFRVRGDVLEIYPAYSAGDAYRVEFFGDEVDRIAEIDTLTGEVKSQLGHIAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV PR + A I EELK+R+ E + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVIPREKMEQAATNILEELKVRVAEFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PE+ L+ +DESH+T+PQ+ GMY GD RK TL + Sbjct: 303 GIENYSRHLTGSLPGEPPCTLIDYFPEEFLIIIDESHITLPQVRGMYAGDRSRKQTLVNF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E E+ + + EQIIRPTGL+DPP+E Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQIMFVSATPSKYE-EEHEMLRTEQIIRPTGLLDPPIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++G ++L+T LTKRMAEDL++Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNREVEKGFKVLITTLTKRMAEDLSDYMREVGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 482 RAEIIRDMRLNVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S++ AI ET RRR Q +N++H I P ++K+ + ++I + Sbjct: 542 NSEGHVIMYADNITDSMRAAIVETERRRRIQQAYNEEHGITPTTIKKAVRDLITISQAAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ D + S+ KK+ + +K L K+MH AA LNFEEAA +RD + +K Sbjct: 602 GITNEVTKDPE--SMDKKELEKLIKELMKKMHKAAAELNFEEAAALRDRMTEIK 653 >gi|223932268|ref|ZP_03624271.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591] gi|330832850|ref|YP_004401675.1| UvrABC system protein B (UvrB protein) [Streptococcus suis ST3] gi|223898949|gb|EEF65307.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591] gi|329307073|gb|AEB81489.1| UvrABC system protein B (UvrB protein) [Streptococcus suis ST3] Length = 661 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/659 (54%), Positives = 482/659 (73%), Gaps = 12/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+SLV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + +V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + TA+ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI------- 601 Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T ++ D +++ +L+K + KA +K L QM AA+ L+FE AA+IRD + LK+ Sbjct: 602 SVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660 >gi|288905600|ref|YP_003430822.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34] gi|288732326|emb|CBI13896.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34] Length = 663 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 478/656 (72%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I EE++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRY+ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRYMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +ELEQ +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN A++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINSRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I D I + Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIR---DLIAISK 605 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ T+++ D +++K + + +K L+KQM AA+ L+FE AA++RD + LK+ Sbjct: 606 SSDTDVAEDTPDYNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661 >gi|295395312|ref|ZP_06805516.1| excision endonuclease subunit UvrB [Brevibacterium mcbrellneri ATCC 49030] gi|294971863|gb|EFG47734.1| excision endonuclease subunit UvrB [Brevibacterium mcbrellneri ATCC 49030] Length = 709 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/673 (53%), Positives = 490/673 (72%), Gaps = 21/673 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AIA++ + + EK +LLG TG+GK+ T A +IE +QRP ++MA Sbjct: 29 FEVVSEYSPSGDQPTAIAEIARRLDDGEKDVVLLGATGTGKSATTAWLIEKVQRPTLIMA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 89 PNKTLAAQLANEFRQLLPHNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVS+VSCIYG+G+ E Y +V L++G+ V++ ELL V+ QY R Sbjct: 149 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRMVSLEVGEEVDRDELLKRFVEMQYTRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE + +PLTG+ IR+ + + I+ Sbjct: 209 DMAFTRGTFRVRGDTVEIIPQY-EELAIRIEFFGDEIEALHTLHPLTGEVIRDEDIVHIF 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL++RL ELEK+ +LLEAQRL+ R TYDLEM+++ G Sbjct: 268 PASHYVAGENRMGKAIAAIEDELQVRLAELEKQNKLLEAQRLKMRTTYDLEMMQSMGFTS 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P L +Y PED LL +DESHVT+PQI GMY GD RK TL E+ Sbjct: 328 GIENYSRHIDGRAAGTAPNCLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVEH 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ T+ +SATPG +ELE+ +G +VEQIIRPTGLVDP V Sbjct: 388 GFRLPSALDNRPLKFDEFLQRIGQTVYLSATPGDFELERSRG-VVEQIIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ R Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E +I+V+Y+HS+V TL+ Sbjct: 447 VKPTRGQIDDLLGEIRDRIEKNERVLVTTLTKKMAEDLTDYLLEHDIKVQYLHSDVDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++ +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT+GRAAR Sbjct: 507 RVELLSELRAGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSKSLIQTVGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V +Y DTIT S++ AIDET RRRE Q+ +NK+H I+P+ + +KI ++ + + ED Sbjct: 567 NVNGEVHMYGDTITPSMREAIDETNRRREIQISYNKEHGIDPKPLVKKIADITERLQRED 626 Query: 741 AATTNI--------------SIDAQQL----SLSKKKGKAHLKS-LRKQMHLAADNLNFE 781 A T + S+ + L + + + A L + L +QMH AA+ L FE Sbjct: 627 ADTRELLTEFDYGKGKRGFNSVKSDTLKPDVTTAPSENLAELAAQLTEQMHEAAEQLQFE 686 Query: 782 EAARIRDEIKRLK 794 AAR+RDE++ +K Sbjct: 687 LAARLRDELQDIK 699 >gi|125972830|ref|YP_001036740.1| excinuclease ABC subunit B [Clostridium thermocellum ATCC 27405] gi|256005843|ref|ZP_05430793.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 2360] gi|281417029|ref|ZP_06248049.1| excinuclease ABC, B subunit [Clostridium thermocellum JW20] gi|125713055|gb|ABN51547.1| Excinuclease ABC subunit B [Clostridium thermocellum ATCC 27405] gi|255990207|gb|EEU00339.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 2360] gi|281408431|gb|EFB38689.1| excinuclease ABC, B subunit [Clostridium thermocellum JW20] gi|316940935|gb|ADU74969.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 1313] Length = 660 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/656 (56%), Positives = 475/656 (72%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L++GI+ + Q LLGVTGSGKTFTMA VIE +Q+P +V+A Sbjct: 4 FKLVSDYKPCGDQPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPNNCVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y+ +++ L+ G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRPGMIKDRDEIIRKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RG FRV GD +EIFP+ D RV FG +I+ I+E LTG+ + I+ Sbjct: 184 EIDFKRGKFRVRGDILEIFPASSSDKVIRVEFFGEEIDRITEVDSLTGEITGVCSHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + + A+ I++EL+ R+ EL+ +G+LLEAQRLEQR YDLEM++ G CQ Sbjct: 244 PASHYATTKAKMQRAIASIEQELEERVRELKSQGKLLEAQRLEQRTRYDLEMMQEIGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG PP TL +Y P+D LL +DESHVTIPQI MY GD RK +L EY Sbjct: 304 GIENYSRHISGRAPGSPPFTLIDYFPKDFLLIIDESHVTIPQIGAMYNGDRSRKESLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATP +E E Q IVEQIIRPTGL+DP + Sbjct: 364 GFRLPSAFDNRPLTFEEFEKKINQVIFVSATPAKYEREHSQQ-IVEQIIRPTGLLDPEIV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI+ Q+ R+++T LTK+MAEDLT+YL E + +V Y+HS++ T+E Sbjct: 423 VKPVKGQIDDLIGEISERVQKNQRVMITTLTKKMAEDLTDYLRELDFKVEYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR+LRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRNLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 NV KVI+YADTIT S++ AIDET RRR+ Q E+N+KH I P+SV++ I +VI+ + Sbjct: 543 NVEGKVIMYADTITDSMRRAIDETNRRRKIQSEYNQKHGITPKSVQKGIRDVIEITKVAE 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 EDA I + S+ K + ++ L +M AA L FE AA +RD+I LK Sbjct: 603 EDA---KYFIRGDEDSMDKDEVLDLIEKLTNEMKAAAAELQFERAAELRDKIAELK 655 >gi|241759550|ref|ZP_04757653.1| excinuclease ABC subunit B [Neisseria flavescens SK114] gi|241320107|gb|EER56468.1| excinuclease ABC subunit B [Neisseria flavescens SK114] Length = 677 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/665 (53%), Positives = 479/665 (72%), Gaps = 7/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + +++ + L K M AA +L FEEAA +RD I+ +K Sbjct: 610 DGGKGRLKGKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIK 669 Query: 795 SSPYF 799 + F Sbjct: 670 ENLLF 674 >gi|329116086|ref|ZP_08244803.1| excinuclease ABC, B subunit [Streptococcus parauberis NCFD 2020] gi|326906491|gb|EGE53405.1| excinuclease ABC, B subunit [Streptococcus parauberis NCFD 2020] Length = 663 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI +L+ I EK Q+LLG TG+GKTFTM++VI + +P +V+A Sbjct: 10 FHLVSKYQPSGDQPQAIEELVDNIEGGEKAQILLGATGTGKTFTMSQVINRVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ + V+ + ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKILGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + T++ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDEHMETSIAKIQAELEEQLKLFESEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED ++ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFMIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ II EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTII-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EIN A++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 IRPSMGQMDDLLGEINTRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T+S++ AIDET RRR+ Q+++N +H+I P+++K++I ++I + Sbjct: 549 NSEGHVIMYADKMTESMRKAIDETARRRQIQIDYNTEHDITPKTIKKEIRDLIGISKGKG 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A S D +++K + K +K L+KQMH AA+ L+FE AA+IRD + LK+ Sbjct: 609 ADVEETSPDYT--AMNKSERKEAIKKLQKQMHEAAEMLDFELAAQIRDIVIELKT 661 >gi|269127058|ref|YP_003300428.1| excinuclease ABC subunit B [Thermomonospora curvata DSM 43183] gi|268312016|gb|ACY98390.1| excinuclease ABC, B subunit [Thermomonospora curvata DSM 43183] Length = 704 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/681 (53%), Positives = 485/681 (71%), Gaps = 29/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD PSGDQP AIA+L I ++ +LLG TG+GKT T+A +IE +QRP +VM Sbjct: 14 FKVVTDMTPSGDQPQAIAELEARIRRGDRDVVLLGATGTGKTATVAWLIERLQRPTLVMQ 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ +E + PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH Sbjct: 74 PNKTLAAQFANELRQMLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ + Y +V L++G +++ LL LV Y R Sbjct: 134 SATNSLLTRRDTVVVASVSCIYGLGTPQEYVDRMVTLRVGMEIDRDALLRKLVDMHYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ MFG++IE ++ +PL G+ + + + + I+ Sbjct: 194 DVAFTRGTFRVRGDTVEIIPQY-EELAVRIEMFGDEIERLATLHPLNGEVLGDSDEVHIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL RL ELE +G+LLEAQRL R T+D+EM+ G+C Sbjct: 253 PASHYVAGPERMERAIAGIEAELAERLAELEAQGKLLEAQRLRMRTTHDIEMMRQVGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESH T+PQI MY GD RK L E+ Sbjct: 313 GIENYSRHIDGREPGSPPHTLLDYFPEDFLLVIDESHQTVPQIGAMYEGDASRKRMLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL++EE+ C R T+ +SATPG +EL + G +VEQ+IRPTGLVDP + Sbjct: 373 GFRLPSALDNRPLKWEEF-CERIGQTVYLSATPGPYELSRVGGDVVEQVIRPTGLVDPEI 431 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++ + Q++D+ EI L A++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 432 VVKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTL 491 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 RIE++R+LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 492 RRIELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 551 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R+V+ +V +YAD IT S+ AI+ET RRR KQ +N +H I P++++++I +++D ++ E Sbjct: 552 RHVSGQVHMYADQITPSMARAIEETNRRRAKQQAYNAEHGIEPKALRKRIADILDSLVRE 611 Query: 740 DAATTNISIDAQQLSLSK----------------------KKGKAHLKSL----RKQMHL 773 DA T + D ++LS K ++ + L+SL +QMH Sbjct: 612 DADTQTLLGDGRRLSRGKAPVPGLAPRTRQAGRHAADLVGERPREELESLIEQMTEQMHQ 671 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA +L FE AAR+RDEIK LK Sbjct: 672 AAADLQFELAARLRDEIKELK 692 >gi|187933656|ref|YP_001887535.1| excinuclease ABC subunit B [Clostridium botulinum B str. Eklund 17B] gi|238691663|sp|B2TQS8|UVRB_CLOBB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|187721809|gb|ACD23030.1| excinuclease ABC, B subunit [Clostridium botulinum B str. Eklund 17B] Length = 657 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 472/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQP AI +LK I + Q LLGVTGSGKTFTMA +IE +QRP +++A Sbjct: 4 FKIHSKFKPMGDQPQAIDTILKSIKQGNEFQTLLGVTGSGKTFTMANIIENLQRPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G E+ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++I PS R+ FG++I+ I EF LTG I + I+ Sbjct: 184 DIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTIIGERNHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + T+ ++ I+ EL+ RL EL + +LLEAQRL QR +D+EM+ G C Sbjct: 244 PASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ + VSATP +ELE Q I EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ + Q++D+Y EI +G RIL+T LTKRMAEDLT+Y+ E ++ YMHS++ T+E Sbjct: 423 IKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMIELGVKATYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG++DVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ E+I+ + + Sbjct: 543 NSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRELIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T ++ + SL+KK+ K +K +M LAA NL FE AA++RD+I+ LK Sbjct: 603 ES-TEYGMEVTK-SLTKKEAKKLIKEYTDEMKLAAKNLQFERAAQLRDKIEELKG 655 >gi|146320885|ref|YP_001200596.1| excinuclease ABC subunit B [Streptococcus suis 98HAH33] gi|253751793|ref|YP_003024934.1| UvrABC system protein B (UvrB protein) [Streptococcus suis SC84] gi|253753616|ref|YP_003026757.1| UvrABC system protein B (UvrB protein) [Streptococcus suis P1/7] gi|253755503|ref|YP_003028643.1| UvrABC system protein B (UvrB protein) [Streptococcus suis BM407] gi|189038005|sp|A4W1F7|UVRB_STRS2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|145691691|gb|ABP92196.1| Helicase subunit of the DNA excision repair complex [Streptococcus suis 98HAH33] gi|251816082|emb|CAZ51703.1| UvrABC system protein B (UvrB protein) [Streptococcus suis SC84] gi|251817967|emb|CAZ55747.1| UvrABC system protein B (UvrB protein) [Streptococcus suis BM407] gi|251819862|emb|CAR45877.1| UvrABC system protein B (UvrB protein) [Streptococcus suis P1/7] gi|292558361|gb|ADE31362.1| Excinuclease ABC, B subunit [Streptococcus suis GZ1] gi|319758141|gb|ADV70083.1| excinuclease ABC subunit B [Streptococcus suis JS14] Length = 661 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/659 (53%), Positives = 483/659 (73%), Gaps = 12/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL++LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNALVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + +V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + TA+ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI------- 601 Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T ++ D +++ +L+K + KA +K L QM AA+ L+FE AA+IRD + LK+ Sbjct: 602 SVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660 >gi|322389662|ref|ZP_08063210.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis ATCC 903] gi|321143661|gb|EFX39091.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis ATCC 903] Length = 662 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/658 (54%), Positives = 478/658 (72%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDRLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++IE I E LTGQ + +V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIERIREIEALTGQVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N VI+YADTIT+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTITQSMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISVTKAVA 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ +I+ SL++++ K +K L+ QM A + L+FE AA+IRD + +K+ Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|62261612|gb|AAX78002.1| unknown protein [synthetic construct] Length = 703 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/669 (53%), Positives = 481/669 (71%), Gaps = 7/669 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 + H ++ F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Sbjct: 21 DKHMLEMNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQ 80 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 Q+P +++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAY+ +DTYIEK+SS+ Sbjct: 81 TQKPCLILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSV 140 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 NE I++MR SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + Sbjct: 141 NEHIEQMRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTK 200 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV+ QY R D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K+ Sbjct: 201 LVEMQYSRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKL 260 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 +++ I+ ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+E Sbjct: 261 KSLHRATIFPSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIE 320 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 M++ G C IENYSR L+GR PG PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD Sbjct: 321 MIQELGYCTGIENYSRLLSGRAPGYPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDL 380 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK+ L YGFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRP Sbjct: 381 SRKSNLVNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRP 439 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP V +R QVED EIN A + R+L+T LTK+M E+LTEYL E + VRY Sbjct: 440 TGLLDPEVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRY 499 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS++ T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SL Sbjct: 500 LHSDIDTVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSL 559 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGR ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I + Sbjct: 560 IQTIGRVARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDD 619 Query: 732 VID--PILLEDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAAR 785 ++D P + + A N+ + + +S G +K+L K+M A L FE+A Sbjct: 620 MLDSSPEMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATT 679 Query: 786 IRDEIKRLK 794 IRD+I +K Sbjct: 680 IRDKITEVK 688 >gi|227485957|ref|ZP_03916273.1| excision endonuclease subunit B [Anaerococcus lactolyticus ATCC 51172] gi|227236002|gb|EEI86017.1| excision endonuclease subunit B [Anaerococcus lactolyticus ATCC 51172] Length = 651 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 8/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++DY P GDQP AI +L +GI + +K Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FKLKSDYAPKGDQPEAIKKLSEGILAGKKHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID+MRH Sbjct: 63 HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++V L+ G + +E++ L+ QY R Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYKKLVVSLRPGQEISPEEVMKKLIDVQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FR GD ++I+P+ + A R+ FG++I++ISEF PLTG+ I + IY Sbjct: 183 DVEFERGSFRARGDVLDIYPAGFDQKAIRIEFFGDEIDQISEFDPLTGKVISKITHAYIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ I++EL+ R+ E E E +LLEAQR+EQR YD+EML+ G C Sbjct: 243 PASHYATTSEKTEKAIISIEKELEERIKEFESENKLLEAQRIEQRTKYDIEMLKEIGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+ R G P TL +Y P+D +L VDESHV+IPQ+ GMY GD RK L ++ Sbjct: 303 GIENYSAHLSQRPRGSRPYTLIDYFPKDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L T+ VSATPG +E+++ G +VEQIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLKFDEFEKLINQTVYVSATPGPYEMKKTHGELVEQIIRPTGLLDPLVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +E++ ++G R+L+T LTK+MAEDLT+YL E++I+VRY+HS++KT+E Sbjct: 423 VRPTANQIDDLIEEVHKTIEKGERVLVTTLTKKMAEDLTDYLMEQSIKVRYLHSDIKTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLDIPE L+ ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIIRDLRLGKFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+Y DTIT S+Q AIDET RRR+ Q + NKKH I P ++K+ I E+I Sbjct: 543 NSEGHVIMYGDTITGSMQRAIDETERRRKIQEDFNKKHGITPTTIKKNIGEII------- 595 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T + + + ++ L ++ +M+ AA+ L+FE AAR+RD+IK+++ + Sbjct: 596 -QITKKAEEEEIEEFKREDIATILINMESEMYKAAEELDFERAARLRDQIKKMREN 650 >gi|323141859|ref|ZP_08076720.1| excinuclease ABC, B subunit [Phascolarctobacterium sp. YIT 12067] gi|322413606|gb|EFY04464.1| excinuclease ABC, B subunit [Phascolarctobacterium sp. YIT 12067] Length = 672 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/651 (54%), Positives = 468/651 (71%), Gaps = 2/651 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q + P+GDQP AIA L +G+ + Q+LLG TG+GKT+T+A+VI +++P +V+A Sbjct: 5 FKIQAPFEPAGDQPQAIANLAEGVEQGLRTQVLLGATGTGKTYTIAQVINKVRKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SE K FFP NAVEYFVSYYDYYQPEAY+P++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAAQLASELKAFFPENAVEYFVSYYDYYQPEAYIPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y M++ L++G ++++++L LV+ QY R Sbjct: 125 SATSALFERKDVIIVASVSCIYGLGAPQEYYDMVLSLRLGQIIDRQKILHKLVEIQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD IE+ P+ + A R+ MF ++++ I EF LTG+ + + I+ Sbjct: 185 DIDFKRGTFRVRGDVIEVIPAAYGEKAVRIEMFDDEVDRIVEFDVLTGEILAQRNHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT R L AM I+EEL RL EL K GRLLEAQRLEQR YDLEM++ G C Sbjct: 245 PASHYVTSRENLERAMNDIREELDERLDELNKHGRLLEAQRLEQRTNYDLEMMQEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GEPP TL Y P+D LL VDESHVT+PQI MY GD RK L E+ Sbjct: 305 GIENYSRHLAGRKAGEPPFTLVNYFPKDFLLVVDESHVTLPQIRAMYAGDRSRKEMLVEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ I VSATP +ELEQ +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSAYDNRPLTFDEFQAQIKQAIYVSATPAKYELEQADN-VVEQIIRPTGLLDPQIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EIN A G R+L+T LTKRMAEDLTEYL + +RVRY+HSE+ T+E Sbjct: 424 IRPIKGQIDDLLGEINKVAAAGERVLVTTLTKRMAEDLTEYLKQAGVRVRYLHSEIATIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII LR GKFDVLVGINLLREGLD+PE L+AILDADKEGFLRS T++IQTIGRAAR Sbjct: 484 RAEIIDSLRAGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSDTAMIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S+Q AIDET RRREKQ +N++H+I P+++ ++ ++I + D Sbjct: 544 NAHGRVIMYADRITDSMQRAIDETNRRREKQQAYNEEHHITPKTIYKEQRQLIKLTKVAD 603 Query: 741 AATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +++L S K+ + L ++M A L+FE AA +RD++ Sbjct: 604 TEEATSYGSSKKLKQKSTKELNTLARELERRMQETAKALDFEAAAELRDQL 654 >gi|303247051|ref|ZP_07333326.1| excinuclease ABC, B subunit [Desulfovibrio fructosovorans JJ] gi|302491477|gb|EFL51362.1| excinuclease ABC, B subunit [Desulfovibrio fructosovorans JJ] Length = 679 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/672 (53%), Positives = 468/672 (69%), Gaps = 18/672 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ++++Y P GDQP AI L + Q+LLG TG+GKTFTMA+V+ + RPA+VM Sbjct: 2 LFQLESEYSPQGDQPGAIEALAANLSQGVPSQVLLGATGTGKTFTMAQVVARLNRPALVM 61 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSEFK FP+NAVEYFVSYYDYYQPEAY+PRTDTYIEK++SIN+ ID++R Sbjct: 62 APNKTLAAQLYSEFKGLFPNNAVEYFVSYYDYYQPEAYLPRTDTYIEKDASINDDIDKLR 121 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT SLL R D ++V+SVSCIYG+GS + Y +M++ L++G + ++S LV+ QY+R Sbjct: 122 HAATHSLLTRRDVLIVASVSCIYGLGSRDYYERMVLSLEVGQKTGMEAVISRLVEIQYER 181 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RG FRV GD IE+ P++ + A R+ F +++E I E PLTG+ + +++ I Sbjct: 182 NDYDFHRGVFRVRGDVIELIPAYSRERAMRLEFFDDELESILETDPLTGEVLGSMQKAII 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHYV+ R LN A+ I+EEL++RL EL LL AQRLE R DLEM+E G C Sbjct: 242 FPASHYVSDRDNLNRAVSDIREELRLRLTELRAANDLLAAQRLEMRCMQDLEMIEELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR GEPP TL +Y PED +LFVDESH+T+PQI GMY GD RK TL + Sbjct: 302 NGIENYSRHLDGRKAGEPPYTLLDYFPEDFILFVDESHITVPQIGGMYAGDRSRKQTLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL FEE+ C + VSATPG WE+ + +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPSALDNRPLNFEEFLCRIGQAVYVSATPGDWEVNRSEGVVVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + QV+D+ E + A G R+L+T LTKRMAE+L +Y +R RY+HS++ TL Sbjct: 422 EVRPTKGQVDDLMAECRVRADAGERVLVTTLTKRMAEELNQYFNSMGLRSRYLHSDIDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ II+ LR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAA Sbjct: 482 ERVAIIKALRQGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV +VILYADT T S+Q A+DET RRREKQ N++ I P ++ + + V+D + + Sbjct: 542 RNVGGRVILYADTETGSMQAAMDETARRREKQEAFNREAGITPSTIIKAMDSVLDSLYGQ 601 Query: 740 D-----------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 AA+ A +SKK + ++ L ++M AA L FE+ Sbjct: 602 GADAAAAASVAAPGRSSRAASVREEASAYG-GMSKKALEKKIRMLEREMREAAKALEFEK 660 Query: 783 AARIRDEIKRLK 794 AA +RD++ L+ Sbjct: 661 AAALRDQVAALR 672 >gi|311107148|ref|YP_003980001.1| excinuclease ABC subunit B [Achromobacter xylosoxidans A8] gi|310761837|gb|ADP17286.1| excinuclease ABC, B subunit [Achromobacter xylosoxidans A8] Length = 728 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/645 (56%), Positives = 465/645 (72%), Gaps = 7/645 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AI L +G+ Q LLGVTGSGKT+TMA VI M RPA+V+A Sbjct: 67 FHLYQPYPPAGDQPTAIEGLTQGVEDGLMFQTLLGVTGSGKTYTMANVIARMGRPALVLA 126 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 127 PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 186 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 187 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDQIARREILARLVAMQYTRN 246 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+IFP+ ++A R+++F ++IE + F PLTG+ + + +Y Sbjct: 247 DAEFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRIRQKLPRFTVY 306 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IKEEL+ R+ +G L+EAQRLEQR +DLEML+ G C+ Sbjct: 307 PGSHYVTPRDTVLRAIETIKEELRERVKRFVDDGHLVEAQRLEQRTRFDLEMLQELGFCK 366 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD RK TL +Y Sbjct: 367 GIENYSRHLSGAAPGEPPPTLIDYLPSDALMFIDESHVTIGQLGGMYRGDRARKETLVQY 426 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 427 GFRLPSALDNRPLKLEEFEARMRQCVFVSATPAAYEKEHTDN-VVEQVVRPTGLVDPLVE 485 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + ARTQV+D+ +I Q R+L+T LTKRMAEDLT++L E +RVRY+HS++ T+E Sbjct: 486 VLPARTQVDDLLGQIKARVSQAERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 545 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 546 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 605 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N ILYAD IT S+Q A++ET RRR KQ + N H I + V++ + E+ID ++ Sbjct: 606 NLNGHAILYADRITDSMQRAMEETERRRAKQQKFNADHGITARGVQKAVRELIDGVV--- 662 Query: 741 AATTNISIDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEE 782 A T + +++A + K KA +K L K M A NL FE+ Sbjct: 663 APTQHDALEAAVPAEFLKDEKALAREIKRLEKLMMDHARNLEFEQ 707 >gi|259909036|ref|YP_002649392.1| excinuclease ABC subunit B [Erwinia pyrifoliae Ep1/96] gi|224964658|emb|CAX56172.1| UvrABC system protein B [Erwinia pyrifoliae Ep1/96] gi|283479053|emb|CAY74969.1| Excinuclease UvrABC subunit B [Erwinia pyrifoliae DSM 12163] gi|310767066|gb|ADP12016.1| excinuclease ABC subunit B [Erwinia sp. Ejp617] Length = 674 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/663 (55%), Positives = 472/663 (71%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLNSEFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F PLTGQ + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKEELVQRKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ R PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG +ELE+ G +++Q++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGHYELEKSGGEVIDQVVRPTGLLDPIVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+TVLTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N++ K ILY D IT S+ AI ET RRREKQ HN++H I PQ + +KI ++++ + Sbjct: 545 NLSGKAILYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLA 604 Query: 738 LEDAATTN------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A N + D + LS + + + L QM A NL FE+AA++RD++ Sbjct: 605 KNKAKPRNMKGRSIVEDDPAYVDLSPQGLQKRIHQLEAQMQQHAQNLEFEQAAQVRDQLH 664 Query: 792 RLK 794 +++ Sbjct: 665 QVR 667 >gi|322435092|ref|YP_004217304.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX9] gi|321162819|gb|ADW68524.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX9] Length = 662 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/661 (54%), Positives = 477/661 (72%), Gaps = 5/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T Y P GDQP AI +L+ G+ + EK Q+LLGVTGSGKTFTMAKVIE +QRPA+++A Sbjct: 3 FQLTTPYTPQGDQPRAIGELVAGLAAGEKDQVLLGVTGSGKTFTMAKVIEEVQRPALILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P D +IEKE++INE++D++R Sbjct: 63 HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPSGDLFIEKEATINEELDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D I+VSSVSCIYG+GS E+Y M++ L+ G ++++++ LV+ Y+R Sbjct: 123 SATRSLFERRDAIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKREDITRRLVEILYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD IE+FP++ E+ A+R+ +FG++I+ +S+ PL G + + IY Sbjct: 183 DVDFRRGTFRVRGDIIEVFPTYDEN-AYRIELFGDEIDGLSQIDPLFGTVRQKYSRLPIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV A I E++ ELE GRL+E+QR+ QR +DLEM+++ G C Sbjct: 242 PKSHYVVQPERKKAASDSILAEMEWWEKELENTGRLVESQRIHQRTRFDLEMIKSVGYCH 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PGEPPPTL +Y P D LLF+DESHVT+PQ+ GM+ GD RK L +Y Sbjct: 302 GIENYSRHFSGRLPGEPPPTLLDYFPRDYLLFIDESHVTVPQLHGMWHGDRSRKQNLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+F+E+ I VSATPG +EL + G++VEQIIRPTGLVDP +E Sbjct: 362 GFRLPSAMDNRPLKFDEFEGRTGQIIYVSATPGPYELTKAAGVVVEQIIRPTGLVDPQIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI + A R+L+T LTKRM+EDL Y E +R RYMHSE++TLE Sbjct: 422 IRPVKGQIDDLLAEIRIRAANDQRVLVTTLTKRMSEDLANYYTEVGVRCRYMHSEIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI ++RDLR G++DVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 482 RIRLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILYAD +T S+Q AIDET RRR KQ +N++H I P++V I + + IL D Sbjct: 542 HLEGRAILYADKMTDSMQRAIDETDRRRTKQEAYNEEHGITPRTVIRSIDDSLATILKAD 601 Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 A +++ D Q + + + ++K+L M AA FE+AA++RD ++ L++ + Sbjct: 602 YA--DLTEDTQGMPDFNTQAELDTYIKNLESDMREAAKKFEFEKAAKLRDTVRELRTKEF 659 Query: 799 F 799 Sbjct: 660 L 660 >gi|332678482|gb|AEE87611.1| Excinuclease ABC subunit B [Francisella cf. novicida Fx1] Length = 668 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/660 (54%), Positives = 478/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +F NAVEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFRDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +KI+++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+MAE+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|256826976|ref|YP_003150935.1| Excinuclease ABC subunit B [Cryptobacterium curtum DSM 15641] gi|256583119|gb|ACU94253.1| Excinuclease ABC subunit B [Cryptobacterium curtum DSM 15641] Length = 708 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + PSGDQPAAI L +G+ + Q LLGVTGSGKTFTMAK IE++QRP +V+ Sbjct: 26 FRVVAPFEPSGDQPAAIRALAQGVQDGLRYQTLLGVTGSGKTFTMAKTIESLQRPTLVLE 85 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +E + FFP NAV YFVSYYDYYQPEAYVP TDT+IEK++SINE+++++RH Sbjct: 86 PNKTLAAQVAAELREFFPDNAVVYFVSYYDYYQPEAYVPSTDTFIEKDASINEEVEKLRH 145 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D IVV+SVSCIYGIGS Y+ M V +++ +++ L+ QY R Sbjct: 146 AATSALLSRRDVIVVASVSCIYGIGSPMDYAGMAVFADKDKPIDRDQMIHGLIDIQYDRN 205 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD++++FP + D R+ +G++IE I+E +TG+ + + E + I+ Sbjct: 206 DYELTRGTFRVRGDALDVFPPY-ADNPIRLEFWGDEIESITEIDNVTGEVLNSYEALPIW 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT +P ++ A+K I+EEL+ RL + ++EG+LLEAQRLE R++YDLEM+ET G C Sbjct: 265 PASHYVTAKPKMDHAIKTIREELRERLAQFKEEGKLLEAQRLEMRVSYDLEMMETMGFCS 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR+PGEPP TL +Y P D + VDESHVT+PQ+ GM+ GD RK TLAE+ Sbjct: 325 GIENYSRHLDGRSPGEPPYTLLDYFPRDFICIVDESHVTVPQVRGMHEGDRSRKVTLAEH 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF+E+ I VSATPG +E Q VEQIIRPTGL+DP + Sbjct: 385 GFRLPSCLDNRPLRFDEFEQRVGQFIYVSATPGDYENRVSQKT-VEQIIRPTGLLDPEII 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +Q++D+ DE AQ R L+T LTK+MAEDLT++L +++I+ RYMHS++ TLE Sbjct: 444 VRPTASQIDDIIDEARARAQNHERTLITTLTKKMAEDLTDHLLDQSIKARYMHSDIGTLE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+R+LR GKFDVLVGINLLREGLD+PE LVAILDADKEGFLR SLIQTIGRAAR Sbjct: 504 RVDILRELRQGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRHYRSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD T S+ LAI ET RRR Q+ +N+KH I PQ++K+ I +++D + E Sbjct: 564 NAHGQVIMYADKRTDSMDLAITETQRRRALQMAYNEKHGITPQTIKKDINDIMDYVQQEA 623 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + I+ + SLS+ + + ++ + M A+ +L+F+ AA +RD+I RLKS Sbjct: 624 GDVSAEQINQELASLSRGEVMRVVAAMEEDMRQASADLDFDRAASLRDQIVRLKS 678 >gi|317471948|ref|ZP_07931281.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA] gi|316900585|gb|EFV22566.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA] Length = 661 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 479/654 (73%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI QL+ G + + LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FELVSEFEPTGDQPEAIRQLVSGFKQGNQFETLLGVTGSGKTFTMANVIQELNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 64 HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVVSSVSCIYGIGS E+YS+M++ L+ G ++ +++ L+ QY R Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKENYSEMMISLRPGMEKDRDQVIDELINIQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI P + A RV FG++I+ I EF LTG+ R++ + I+ Sbjct: 184 ELDFKRGTFRVKGDVLEILPVSTFEEAVRVEFFGDEIDRIVEFDVLTGEVKRSINFLAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A+ IK+EL R+ ++ +L+EAQR+ +R +D+EML TG C Sbjct: 244 PASHYVVPQEQIEQAIVNIKQELAERVKYFQENDQLIEAQRIAERTNFDIEMLRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL ++ +D L+ VDESH+T+PQI GMY GD RK+TL ++ Sbjct: 304 GIENYSRHLTGGKPGEPPSTLIDFFGDDFLVIVDESHITVPQIGGMYSGDQSRKSTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATP +E E + + EQIIRPTGL+DPP++ Sbjct: 364 GFRLPSAKDNRPLEFSEFESKIDQMMFVSATPSKYEAEH-ELLRAEQIIRPTGLLDPPID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E++ +QG ++L+T LTKRMAE+LT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVKGQIDDLLSEVHKETEQGHKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QT+GRAAR Sbjct: 483 RTEIVRDLRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q ++NK+H I PQ++++ I ++I E+ Sbjct: 543 NSEGHVIMYADNMTDSMEAAISETNRRRAIQDQYNKEHGITPQTIQKDIRDLIKISDEEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +N + S++KK+ K +++ L K+M+ AA LNFEEAA +RDE+K K Sbjct: 603 AEQSN---EKDIESMNKKELKENIERLTKKMNRAAAELNFEEAAALRDELKEYK 653 >gi|306831686|ref|ZP_07464843.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978625|ref|YP_004288341.1| excinuclease ABC, B subunit [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426111|gb|EFM29226.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178553|emb|CBZ48597.1| excinuclease ABC, B subunit [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 663 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 478/656 (72%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I EE++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +ELEQ +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN A++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINSRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I D I + Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIR---DLIAISK 605 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ T+I+ D +++K + + +K L+KQM AA+ L+FE AA++RD + LK+ Sbjct: 606 SSDTDIAEDVPDYNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661 >gi|238020774|ref|ZP_04601200.1| hypothetical protein GCWU000324_00664 [Kingella oralis ATCC 51147] gi|237867754|gb|EEP68760.1| hypothetical protein GCWU000324_00664 [Kingella oralis ATCC 51147] Length = 677 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/665 (53%), Positives = 476/665 (71%), Gaps = 7/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLNQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIITTLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHHRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID + E+ Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609 Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + +++ + L K M AA +L FEEAA IRD I+ +K Sbjct: 610 DGGKGRLKGKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRGIK 669 Query: 795 SSPYF 799 F Sbjct: 670 EGLLF 674 >gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B [Herbaspirillum seropedicae SmR1] gi|300075241|gb|ADJ64640.1| excinuclease ABC subunit B (SOS response excision nuclease DNA repair ATP-binding) protein [Herbaspirillum seropedicae SmR1] Length = 693 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/669 (53%), Positives = 479/669 (71%), Gaps = 8/669 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF F++ + P+GDQPAAI +L++G++ Q LLGVTGSGKT+TMA Sbjct: 12 DESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANT 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I + RPAIV APNK LAAQLYSEF+ FFPHNAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR S T+SL+ER D ++V++VS IYGIG+ Y QMI+ L+ D V Q+++ Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L++ QY R ++ RGTFRV GD+I++FP+ ++A R+ F ++I+ + F PLTG Sbjct: 192 IARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + IY SHYVTPR T+ A++ IKEEL RL KE +L+E QRLEQR + Sbjct: 252 RVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 D+EM+ G + IENYSR+L+G PG+PPPTL +Y+P+D+++F+DESHV I Q++GMY Sbjct: 312 DIEMMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLDESHVLIGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPL+F+E+ TI VSATP +E +VEQ+ Sbjct: 372 GDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQ-VVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EIN + R+L+T LTKRMAE LTE+L + I+ Sbjct: 431 VRPTGLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDV+VGINLLREGLDIPE LVAILDADKEGFLRS+ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVAILDADKEGFLRSE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARN+N ILY D +T S+ AI ET RRR KQL N + I P +K++ Sbjct: 551 RSLIQTIGRAARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFNAANGIVPTGIKKE 610 Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I E+ID + A T + + ++ S+S+K+ +K L KQM A NL FE+AA Sbjct: 611 IRELIDGVFNPAQARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQEHAKNLEFEKAAA 670 Query: 786 IRDEIKRLK 794 RD++ LK Sbjct: 671 ARDQLHLLK 679 >gi|167765635|ref|ZP_02437688.1| hypothetical protein CLOSS21_00119 [Clostridium sp. SS2/1] gi|167712681|gb|EDS23260.1| hypothetical protein CLOSS21_00119 [Clostridium sp. SS2/1] Length = 662 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/664 (54%), Positives = 480/664 (72%), Gaps = 5/664 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L KG + + LLGVTGSGKTFTMA +I+ + +P +++A Sbjct: 4 FELVSEYEPTGDQPQAIEKLTKGFQDGNQFETLLGVTGSGKTFTMANIIQNLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 64 HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVVSSVSCIYGIGS ESYS+M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKESYSEMMISLRPGMIKDRDEVIDDLINIQYVRS 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI P + A RV FG++I+ I EF LTG+ R++ I+ Sbjct: 184 ELDFKRGTFRVKGDVLEILPVSTFEDAVRVEFFGDEIDRIVEFDVLTGEVKRSLNFAAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A+K IKEEL ++ ++ +L+EAQR+ +R +D+EML TG C Sbjct: 244 PASHYVVPQEQIERAIKGIKEELAEQVTYFKEHDQLIEAQRIAERTNFDIEMLRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+PP TL ++ +D L+ +DESH+T+PQI GMY GD RK+TL ++ Sbjct: 304 GIENYSRHLAGLEPGQPPSTLIDFFGDDFLMIIDESHITVPQIGGMYAGDQSRKSTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATPG +E E+ + + EQIIRPTGL+DP + Sbjct: 364 GFRLPSAKDNRPLEFGEFEQKIDQMLFVSATPGKYE-EEHELLRAEQIIRPTGLLDPAIN 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ +G ++L+T LTKRMAE+LT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLLGEIHKETDKGNKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RIEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+ AI ET RRRE Q E+NK+H I PQ++K+ I ++I + Sbjct: 543 NSEGHVIMYADHMTDSMHAAITETERRREIQDEYNKEHGITPQTIKKDIRDLIKISDEHE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T D + S+SKK+ K ++ L K+M+ AA LNFE AA++RDE+K K + +Q Sbjct: 603 EETGGYEKDME--SMSKKELKEVIERLSKKMNQAAAELNFELAAQLRDELKEFKIA--YQ 658 Query: 801 GLDD 804 DD Sbjct: 659 EYDD 662 >gi|7766819|pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Length = 658 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/656 (56%), Positives = 475/656 (72%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA+L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI-SEFYPLTGQKIRNVETIKI 379 DI RGTFRV GD +EIFP+ ++ RV FG++IE I +E LTG+ + E + I Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIRAEVDALTGKVLGEREHVAI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SH+VT + A++ I++EL+ RL EL +G+LLEAQRLEQR YDLEM+ G C Sbjct: 244 FPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L + Sbjct: 304 SGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVD 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL FEE+ I VSATPG +ELE G+ VEQIIRPTGL+DP + Sbjct: 364 HGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGV-VEQIIRPTGLLDPTI 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTL Sbjct: 423 DVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 483 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YADTITKS+++AI ET RRR Q E+N+KH I P++VK++I +VI Sbjct: 543 RNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA- 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++K++ + +++L +M AA L+FE AA++RD I LK+ Sbjct: 602 -AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656 >gi|134095424|ref|YP_001100499.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans] gi|133739327|emb|CAL62377.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Herminiimonas arsenicoxydans] Length = 694 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/669 (53%), Positives = 481/669 (71%), Gaps = 8/669 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + SK +TF F++ + P+GDQP AIA+L++GI Q LLGVTGSGKT+T+A V Sbjct: 12 DESKIVTFPDSPFRLYQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVTGSGKTYTVANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARMGRPAIVFAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR S T+SL+ER D +++++VS IYGIG+ Y QMI+ L+ D V Q+++ Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTLRAKDKVSQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R ++ RGTFRV GD+I+IFP+ ++A R+ MF ++IE + F PLTG Sbjct: 192 IARLIAMQYTRNEVDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEIESLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y SHYVTPR T+ A+ IK+EL+ RL KE +L+E QRLEQR + Sbjct: 252 RVKQKIPRFTVYPGSHYVTPRATVLRAIDTIKDELRERLEFFRKENKLIEEQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEM++ G + IENYSR+L+G G+PPPTL +Y+P+D+L+F+DESHV + Q++GMY Sbjct: 312 DLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESHVLMGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPLRF+E+ + VSATP +E +VEQ+ Sbjct: 372 GDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYENAHADQ-VVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI ++ R+L+T LTKRM+E LTE+L + I+ Sbjct: 431 VRPTGLVDPLISVRPASTQVDDLMTEITDRVKKHERVLVTTLTKRMSEQLTEFLSDNGIK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARN+N ILY D +T S++ AIDET RRR KQ+ N +NI P +K+ Sbjct: 551 RSLIQTIGRAARNLNGMAILYGDKVTDSMRRAIDETERRRAKQMAFNTANNITPVGIKKH 610 Query: 729 IMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I E+ID + + A + A+ ++S+K+ +K L KQM A NL FE+AA+ Sbjct: 611 IRELIDGVYSQQDAREEFNAAQEHAKYEAMSEKQVSKEIKRLEKQMLGHAKNLEFEKAAQ 670 Query: 786 IRDEIKRLK 794 +RD+++ LK Sbjct: 671 VRDQLRILK 679 >gi|56708262|ref|YP_170158.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110670733|ref|YP_667290.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis FSC198] gi|224457382|ref|ZP_03665855.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis MA00-2987] gi|254370747|ref|ZP_04986752.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis FSC033] gi|254875082|ref|ZP_05247792.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis MA00-2987] gi|81820767|sp|Q5NFN4|UVRB_FRATT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56604754|emb|CAG45832.1| DNA excision repair enzyme, subunit B (UvrABC system protein B) [Francisella tularensis subsp. tularensis SCHU S4] gi|110321066|emb|CAL09215.1| DNA excision repair enzyme, subunit B (UvrABC system protein B) [Francisella tularensis subsp. tularensis FSC198] gi|151568990|gb|EDN34644.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis FSC033] gi|254841081|gb|EET19517.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis MA00-2987] gi|282159489|gb|ADA78880.1| excinuclease ABC subunit B [Francisella tularensis subsp. tularensis NE061598] Length = 668 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/660 (53%), Positives = 477/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAY+ +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ EKEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGYPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+M E+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEVK 662 >gi|149911642|ref|ZP_01900252.1| Putative excinuclease ABC subunit B [Moritella sp. PE36] gi|149805266|gb|EDM65281.1| Putative excinuclease ABC subunit B [Moritella sp. PE36] Length = 664 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/664 (52%), Positives = 480/664 (72%), Gaps = 17/664 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y PSGDQP AI +L+ ++ Q LLGVTGSGKT+T+A +I + RP ++M Sbjct: 4 LFDLCSEYTPSGDQPQAIEKLVDSFNAGVACQTLLGVTGSGKTYTVANMIAQLNRPTLLM 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY+E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N I++MR Sbjct: 64 APNKTLAAQLYAEMKGFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDAAVNAHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D I+++SVS IYG+G +SY +M++ + +G+ + Q+ ++ L + QY R Sbjct: 124 LSATKALLERRDVILIASVSAIYGLGDPKSYLKMMLHVSVGEVISQRSIIRRLAELQYIR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ R TFRV G+ I+I+P+ + A R+ MF ++IE IS F PLTG + VE I Sbjct: 184 NDMDFKRSTFRVRGEVIDIYPAESDKHAVRIEMFDDEIERISYFDPLTGAVEKTVERATI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + +A+++IK EL R +L +L+E QR+ QR+ +D+EM++ G C Sbjct: 244 YPKTHYVTPREKILSAIEHIKVELSERKKQLLSANKLIEEQRVSQRVQFDIEMMQELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PG+ PPTL +Y+P+D +L +DESHVT+PQI MY+GD RK TL E Sbjct: 304 SGIENYSRYLSGRVPGDAPPTLLDYLPDDGILVIDESHVTVPQIGAMYKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ + P T+ VSATP +EL++C+G IV+Q++RPTGL+DP + Sbjct: 364 FGFRLPSALDNRPLKFEEFESISPQTLYVSATPSQYELDRCEGEIVQQLVRPTGLLDPII 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EIN+ +G R+L T LTKRM+EDL EYL + ++VRY+HS++ T+ Sbjct: 424 EVRPVDTQVDDLLSEINIRVAKGERVLATTLTKRMSEDLAEYLADHGVKVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734 RN+ K ILYA+ ITK++ AI ET RRR Q EHN KH I P+ +K+K+ + ++ Sbjct: 544 RNLEGKAILYANRITKAMDKAISETDRRRALQHEHNVKHGITPKGLKKKVGDALNIGRTP 603 Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + E AT + A +LSK+ + L +QM+ A +L FE+A RD++ Sbjct: 604 EQQMMFIAEQKATYAMFTPA---ALSKE-----IVRLEEQMYKYAQDLEFEKAGETRDKV 655 Query: 791 KRLK 794 +L+ Sbjct: 656 AKLR 659 >gi|312866754|ref|ZP_07726968.1| excinuclease ABC, B subunit [Streptococcus parasanguinis F0405] gi|311097835|gb|EFQ56065.1| excinuclease ABC, B subunit [Streptococcus parasanguinis F0405] Length = 662 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/658 (54%), Positives = 479/658 (72%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++IE I E LTGQ + +V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIERIREIEALTGQVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLISVTKAVA 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ +I+ SL++++ K +K L+ QM A + L+FE AA+IRD + +K+ Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|169833714|ref|YP_001694670.1| excinuclease ABC subunit B [Streptococcus pneumoniae Hungary19A-6] gi|238688299|sp|B1IC35|UVRB_STRPI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|168996216|gb|ACA36828.1| excinuclease ABC, B subunit [Streptococcus pneumoniae Hungary19A-6] Length = 662 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/663 (54%), Positives = 476/663 (71%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+ E+ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EI 597 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D I + A + SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 598 RDLIAVTKAVAKEEDKEVDITSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|225874345|ref|YP_002755804.1| excinuclease ABC, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225794026|gb|ACO34116.1| excinuclease ABC, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 664 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/659 (54%), Positives = 473/659 (71%), Gaps = 1/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P GDQ AI +L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIE + RPA+++A Sbjct: 5 FQLVSEYQPKGDQVRAIRELVGGVASGEQHQVLLGVTGSGKTFTMAKVIEELNRPALILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFP+NAVEYFVSYYDYYQPEAY+P D YIEKE++INE++D++R Sbjct: 65 HNKTLAAQLFHEFKQFFPNNAVEYFVSYYDYYQPEAYIPAGDLYIEKEATINEELDKLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER DCI+V+SVSCIYG+GS E+Y M++ L+ G + ++++ LV+ Y+R Sbjct: 125 SATRSLFERRDCIIVASVSCIYGLGSPEAYYGMLLLLEKGQKIRREDITRRLVEILYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IE++P++ E+ A+R+ +FG++I+ +++ PL G + + IY Sbjct: 185 DADFRRGTFRVRGDVIEVYPTYDEN-AFRIELFGDEIDSLAQIDPLFGTVKQKYSRLPIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV +AM I EEL ELE +GR++EAQR+ QR +DLEM+++ G C Sbjct: 244 PKSHYVVMPERKKSAMDSILEELGTWEKELEAQGRMVEAQRVHQRTRFDLEMIKSMGYCH 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PGEPPPTL +Y P D LLF+DESHVT+PQ+ GM+ GD RK L +Y Sbjct: 304 GIENYSRHFSGRLPGEPPPTLLDYFPRDFLLFIDESHVTVPQLHGMWHGDRSRKQNLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + VSATPG++EL + G++VEQIIRPTGL+DP VE Sbjct: 364 GFRLPSAMDNRPLKFEEFEARTHQLVYVSATPGAYELTKSAGVVVEQIIRPTGLIDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR R Q++D+ EI +G R+L+T LTKRMAEDL+ Y E +R RYMHSE++TLE Sbjct: 424 IRPIRGQIDDLLAEIRDRVAKGERVLVTTLTKRMAEDLSGYYSEVGVRCRYMHSEIETLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++++RDLR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RVKLLRDLRKGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSAGSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN + ILYAD IT S++ A+DET RRR Q +N++H I P S+ + IL + Sbjct: 544 NVNGRAILYADRITDSMRQAMDETDRRRTVQRAYNEEHGITPTSIIRSADMSLAKILKAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799 A + S+++ ++ L +M AA FE+AA++RD IK L+S + Sbjct: 604 YADLEEESEEMPEFSSQEQLDTYILKLETEMREAAKKFEFEKAAKLRDTIKDLRSKEFL 662 >gi|269218447|ref|ZP_06162301.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 848 str. F0332] gi|269211558|gb|EEZ77898.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 848 str. F0332] Length = 695 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/672 (53%), Positives = 481/672 (71%), Gaps = 19/672 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y PSGDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE +QRP +++ Sbjct: 16 FQVVSQYAPSGDQPAAIAELAERIEAGEKDVVLLGATGTGKSATTAWLIEKVQRPTLIIE 75 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 76 PNKTLAAQMAAEFRELMPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 135 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y +VQL++G +++ EL+ V QY R Sbjct: 136 SATNSLLTRRDTVVVSSVSCIYGLGTPQEYVARMVQLEVGQRIDRDELMRRFVGMQYTRN 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG IR V+ ++ Sbjct: 196 DVAFARGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDAITLLHPLTGTVIRRVDRAHVF 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+ EL RL L+ + ++LEAQRL+ R YD+EM+ GSC Sbjct: 255 PASHYVAGPERMARALEGIEAELAERLDVLQTQNKMLEAQRLQMRTNYDVEMMRNIGSCA 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL VDESHVT+PQI MY GD RK TL +Y Sbjct: 315 GIENYSRHIDGRGPGTPPNTLLDYFPEDFLLIVDESHVTVPQIGAMYEGDMSRKRTLVDY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+F E+ T+ +SATPG +E+E G +VEQIIRPTGLVDP V Sbjct: 375 GFRLPSAMDNRPLKFPEFLERVGQTVYLSATPGKYEMEHSDG-VVEQIIRPTGLVDPEVV 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +I ++ R+L+T LTK+MAEDLT+YL ER+I+V Y+HS+V TL Sbjct: 434 VKPTEDQIDDLLGQIKERVERNERVLVTTLTKKMAEDLTDYLAERDIKVEYLHSDVDTLR 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LVAILDADK+GFLRS TSLIQTIGRAAR Sbjct: 494 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTTSLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD+IT +++ AIDET RRR KQ+ +N++ I+PQ +++KI +V D + ED Sbjct: 554 NVSGQVIMYADSITPNMREAIDETNRRRAKQMAYNEERGIDPQPLRKKIADVTDMLARED 613 Query: 741 AATTNI-------------SIDAQQLSLSKKKGKAHLKSLRKQ----MHLAADNLNFEEA 783 T + A + +G+ LK L ++ MH AA +L FE A Sbjct: 614 IDTAALLEGGYRKERAASPEAPATLRESAAAEGERDLKGLIEEMTELMHEAAASLKFELA 673 Query: 784 ARIRDEIKRLKS 795 AR RDEIK LKS Sbjct: 674 ARYRDEIKGLKS 685 >gi|319946954|ref|ZP_08021188.1| excision endonuclease subunit UvrB [Streptococcus australis ATCC 700641] gi|319747002|gb|EFV99261.1| excision endonuclease subunit UvrB [Streptococcus australis ATCC 700641] Length = 662 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/658 (54%), Positives = 478/658 (72%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISVTKVVA 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ +I+ SL++++ K +K L+ QM A + L+FE AA+IRD + +K+ Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQAAVEVLDFELAAQIRDMMLEVKA 660 >gi|332074849|gb|EGI85321.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA41301] Length = 662 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL++L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNNL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|323351407|ref|ZP_08087063.1| excision endonuclease subunit UvrB [Streptococcus sanguinis VMC66] gi|322122631|gb|EFX94342.1| excision endonuclease subunit UvrB [Streptococcus sanguinis VMC66] Length = 662 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT+S+QLAIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTITQSMQLAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMVKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|299535981|ref|ZP_07049300.1| excinuclease ABC subunit B [Lysinibacillus fusiformis ZC1] gi|298728586|gb|EFI69142.1| excinuclease ABC subunit B [Lysinibacillus fusiformis ZC1] Length = 659 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/654 (54%), Positives = 474/654 (72%), Gaps = 1/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P ++MA Sbjct: 4 FDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS E Y +M+V ++ G +E+ +LL LV QY+R Sbjct: 124 SATSALFEREDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + + E + I+ Sbjct: 184 DVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL L E +LLEAQRLEQR YDLEM+ G C Sbjct: 244 PASHFVTREEKMRKAIENIEKELEERLALLRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED LL VDESHVT+PQ+ GMY GD RK L E+ Sbjct: 304 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 364 GFRLPSALDNRPLRFEEYENRVHQAIYVSATPGPYELEHTPE-MVEQIIRPTGLLDPLID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ DEI + R+L+T LTK+M+EDL+ YL E ++V Y+HSE+KTLE Sbjct: 423 VRPIEGQIDNLIDEIQDRIARDERVLVTTLTKKMSEDLSAYLKEMGLKVEYLHSEIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LR G +DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +T S++ AIDET RRR Q+ +N++H I PQ++ +KI +VI + + Sbjct: 543 NANGHVIMYADHVTDSMKKAIDETKRRRALQMAYNEEHGITPQTIIKKIPDVIRATQVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ + L+K + + + SL +M AA L+FE AA +RD I LK Sbjct: 603 EEESYVTKATKGKKLTKAEREQLVASLEVEMKEAAKALDFERAAELRDTIFELK 656 >gi|268315625|ref|YP_003289344.1| excinuclease ABC, B subunit [Rhodothermus marinus DSM 4252] gi|262333159|gb|ACY46956.1| excinuclease ABC, B subunit [Rhodothermus marinus DSM 4252] Length = 687 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/669 (54%), Positives = 470/669 (70%), Gaps = 15/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA+L +GI +K Q LLG TG+GKTF ++ VI+ +QRP +VM+ Sbjct: 10 FELVAPFEPTGDQPRAIAELTEGILRGDKYQTLLGATGTGKTFVLSHVIQNVQRPTLVMS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVE+F+SYYDYYQPEAY+P TDTYIEK+ +INE+IDR+R Sbjct: 70 PNKTLAAQLYGEFKQFFPNNAVEFFISYYDYYQPEAYIPATDTYIEKDLAINERIDRLRL 129 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +L+ R D IVV+SVSCIYGIGS + Y + IV L +G +E+ ELL LV Y R Sbjct: 130 RATSALVSGRRDVIVVASVSCIYGIGSPDEYREQIVPLHVGQQIERNELLRRLVNIYYTR 189 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ GTFRV GD ++IFP++ E+ A+R+ +G++I+ I+ P TG+ I I Sbjct: 190 NDVEFKPGTFRVRGDVVDIFPAYAEESAFRIEFWGDEIDRIARLDPTTGELGAEETAITI 249 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +VTPR L A+ I+EEL+ RL L EG+LLEAQRLEQR +D+EML G C Sbjct: 250 YPAKIFVTPRDRLERAIASIEEELRWRLAVLRAEGKLLEAQRLEQRTRFDIEMLREVGYC 309 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L+GR PGE P LF+Y P+D LL +DESHVTIPQ+ MY GD RK TL E Sbjct: 310 SGIENYSRHLSGRAPGERPYCLFDYFPDDYLLIIDESHVTIPQVRAMYNGDRARKLTLVE 369 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL FEE+ L I VSATPG +ELE+ G++VEQIIRPTG+ DP V Sbjct: 370 HGFRLPSALDNRPLTFEEFEALHHQVIFVSATPGDYELEKSGGVVVEQIIRPTGIPDPEV 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ +EI +G R L+T LTKRMAEDL EYL +RVRY+HSE+ L Sbjct: 430 EVRPTEGQIDDLLEEIRQVVARGERALVTTLTKRMAEDLAEYLDRFGVRVRYLHSEIDAL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++++R LRLG+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS+ SLIQT GRAA Sbjct: 490 ERVDLLRGLRLGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTAGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-------------- 725 RN N K++LYAD IT+++Q IDET RRR QLE+N+KH I P++V Sbjct: 550 RNANGKILLYADRITEAMQRMIDETNRRRAIQLEYNRKHGITPRTVYKSREEILKSTIVA 609 Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 +EK ++D E+ I D L+ ++ + ++ LR++M AA+NL FE AA Sbjct: 610 EEKYRPLVDSPRYEEPEVPPIVADPVLKELTPEQKRELIEQLRREMLEAAENLEFERAAE 669 Query: 786 IRDEIKRLK 794 +RD I L+ Sbjct: 670 LRDTILALE 678 >gi|168185651|ref|ZP_02620286.1| excinuclease ABC, B subunit [Clostridium botulinum C str. Eklund] gi|169296510|gb|EDS78643.1| excinuclease ABC, B subunit [Clostridium botulinum C str. Eklund] Length = 657 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/654 (54%), Positives = 469/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI + KGI EK Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKIHSSYKPTGDQPKAIKSISKGILKAEKFQTLLGVTGSGKTFTMANIIEEVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLTSEFREFFPDNCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND IVV+SVSCIYG+G+ E Y ++ V L+ G ++ E++ LV QY+R Sbjct: 124 SATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIMRQLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFR GD ++IFP+ ++ RV FG++I++I EF LTG I + I+ Sbjct: 184 EINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNIINTRKHALIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ L E +LLEAQR+ QR +D+EM+ G C Sbjct: 244 PASHFATSKDKLEIAIKKIEEELEDRVEVLTAEDKLLEAQRIRQRTNFDIEMMREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y P+D LLF+DESHVT+PQ+ MY GD RK L EY Sbjct: 304 GIENYSRVLDGREPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F+E+ T+ VSATP +ELE + EQIIRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFDEFEGKLNETVFVSATPAQYELEHSTN-VAEQIIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+Y I +G R+L+T LTK+M+EDLT+YL I+ Y+HS + T++ Sbjct: 423 VRPIKGQIDDLYSSIKETIYKGFRVLVTTLTKKMSEDLTDYLKGMGIKTEYLHSSIDTIK 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RMEIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITK++ AI ET RRR+ Q+E+N+KH I P++V + I +VI + E+ Sbjct: 543 NSESKVIMYADNITKAMDKAISETNRRRKIQMEYNEKHGIIPKTVLKDIRDVIQTRVAEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + LSKK+ + + K+M +AA L FE+AA++RDEI +LK Sbjct: 603 EEEYKVKNNTDK--LSKKEIEKLISKYEKEMKVAAKELQFEKAAQLRDEILKLK 654 >gi|229820672|ref|YP_002882198.1| excinuclease ABC, B subunit [Beutenbergia cavernae DSM 12333] gi|259710322|sp|C5BV49|UVRB_BEUC1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|229566585|gb|ACQ80436.1| excinuclease ABC, B subunit [Beutenbergia cavernae DSM 12333] Length = 698 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/676 (53%), Positives = 480/676 (71%), Gaps = 24/676 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PSGDQP AIAQL + + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 14 FEVISDFTPSGDQPDAIAQLTARLQAGEKDIVLLGATGTGKSATTAWLIEQVQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ + Y +V+L++G +E+ +LL V QY R Sbjct: 134 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLRVGMQIERDDLLRQFVGMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG+++E I +PLTG +R E + ++ Sbjct: 194 DLSFQRGTFRVRGDTVEIIPVY-EELALRIEFFGDEVEAIHTLHPLTGDVVRAEEEMYLF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL+ RL ELE GRLLEAQRL R TYD+EM+ G+C Sbjct: 253 PATHYVAGPERMERAIAGIEVELEDRLAELEGGGRLLEAQRLRMRTTYDIEMMRQIGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED +L +DESH T+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGREPGSPPHTLLDYFPEDFMLVIDESHQTVPQIGAMYEGDSSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLR+EE+ T+ +SATPG +EL Q G+ VEQ+IRPTGLVDP + Sbjct: 373 GFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGQSDGV-VEQVIRPTGLVDPEIV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EIN A++ R+L+T LTK+M+EDLT+YL ER +RVRY+HSEV TL Sbjct: 432 VKPTKGQIDDLLAEINARAERDERVLVTTLTKKMSEDLTDYLLERGVRVRYLHSEVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRTGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD++T S+ LAI+ET RRREKQ+ +N + I+P+ ++++I ++ + + ED Sbjct: 552 NVSGQVHMYADSVTPSMALAIEETNRRREKQVAYNTERGIDPEPLRKRIGDITELLARED 611 Query: 741 AATTNISIDAQQLSLSKK----------------KGKAH------LKSLRKQMHLAADNL 778 T + + + SK G A ++ L QMH+AA L Sbjct: 612 IDTKELLAGGYRQAGSKAPVPRKAGGDGSMRERLAGAATADLAELIQELTDQMHVAAGEL 671 Query: 779 NFEEAARIRDEIKRLK 794 FE AAR+RDEI LK Sbjct: 672 QFEVAARLRDEISDLK 687 >gi|167748523|ref|ZP_02420650.1| hypothetical protein ANACAC_03267 [Anaerostipes caccae DSM 14662] gi|167652515|gb|EDR96644.1| hypothetical protein ANACAC_03267 [Anaerostipes caccae DSM 14662] Length = 681 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 479/654 (73%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI QL+ G + + LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 24 FELVSEFEPTGDQPEAIRQLVSGFKQGNQFETLLGVTGSGKTFTMANVIQELNKPTLIIA 83 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 84 HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 143 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVVSSVSCIYGIGS E+YS+M++ L+ G ++ +++ L+ QY R Sbjct: 144 SATAALIERKDVIVVSSVSCIYGIGSKENYSEMMISLRPGMEKDRDQVIDELINIQYVRN 203 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI P + A RV FG++I+ I EF LTG+ R++ + I+ Sbjct: 204 ELDFKRGTFRVKGDVLEILPVSTFEEAVRVEFFGDEIDRIVEFDVLTGEVKRSINFLAIF 263 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A+ IK+EL R+ ++ +L+EAQR+ +R +D+EML TG C Sbjct: 264 PASHYVVPQEQIEQAIVNIKQELAERVKYFQENDQLIEAQRIAERTNFDIEMLRETGFCS 323 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL ++ +D L+ VDESH+T+PQI GMY GD RK+TL ++ Sbjct: 324 GIENYSRHLTGGKPGEPPSTLIDFFGDDFLVIVDESHITVPQIGGMYSGDQSRKSTLVDF 383 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATP +E E + + EQIIRPTGL+DPP++ Sbjct: 384 GFRLPSAKDNRPLEFSEFESKIDQMMFVSATPSKYEAEH-ELLRAEQIIRPTGLLDPPID 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E++ +QG ++L+T LTKRMAE+LT+Y+ E IRV+Y+HS++ TLE Sbjct: 443 VRPVKGQIDDLLSEVHKETEQGHKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QT+GRAAR Sbjct: 503 RTEIVRDLRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTVGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q ++NK+H I PQ++++ I ++I E+ Sbjct: 563 NSEGHVIMYADNMTDSMEAAISETNRRRAIQDQYNKEHGITPQTIQKDIRDLIKISDEEE 622 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +N + S++KK+ K +++ L K+M+ AA LNFEEAA +RDE+K K Sbjct: 623 AEQSN---EKDIESMNKKELKENIERLTKKMNRAAAELNFEEAAALRDELKEYK 673 >gi|329766890|ref|ZP_08258418.1| UvrABC system protein B [Gemella haemolysans M341] gi|328837615|gb|EGF87240.1| UvrABC system protein B [Gemella haemolysans M341] Length = 666 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/662 (54%), Positives = 466/662 (70%), Gaps = 18/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ Y P GDQ AIA+L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A Sbjct: 10 FDLQSKYEPKGDQINAIAELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++L L+ QY R Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKMLEKLISIQYMRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD IEIFP+ + + RV MFG++I+ I E PLTG+ + +E I IY Sbjct: 190 DIEFTRGTFRVRGDVIEIFPASRSENSVRVEMFGDEIDRIREINPLTGEVLSELEHIAIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V A+K I+ EL+ RL L E +LLEAQRLEQR YDLEM+E G C Sbjct: 250 PASHFVAGDEKTKEAIKRIRAELEERLKVLNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R PG P TL +Y P+D LL VDESHVT+PQ+ GM+ GD RK L +Y Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPDDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL FEE+ I VSATPG +ELE I EQIIRPTGL+DP ++ Sbjct: 370 GFRLPTALDNRPLNFEEFEKKLNQAIFVSATPGDFELEHSTK-ITEQIIRPTGLLDPIID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV D+ E +G R+L+T LTK+MAE LT YL E ++V Y+HS++KTLE Sbjct: 429 IRPVSDQVFDITKEAEKIIAKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFD+L+GINLLREGLDIPE LVAILDADKEGFLR +L+QTIGRAAR Sbjct: 489 RTEIIRNLRLGKFDILIGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGIIPQTIIKDIRDSISAKKEVV 608 Query: 734 -DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D +LE + NI+ D + HL L +QM AA+ FE+AA++RD I Sbjct: 609 KDDEILELEESANINDDNIE---------EHLAELEQQMFAAAEKFEFEQAAKLRDTIAE 659 Query: 793 LK 794 LK Sbjct: 660 LK 661 >gi|225856905|ref|YP_002738416.1| excinuclease ABC subunit B [Streptococcus pneumoniae P1031] gi|254764914|sp|C1CKX8|UVRB_STRZP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|225726094|gb|ACO21946.1| excinuclease ABC, B subunit [Streptococcus pneumoniae P1031] Length = 662 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|15901100|ref|NP_345704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TIGR4] gi|111658438|ref|ZP_01409117.1| hypothetical protein SpneT_02000409 [Streptococcus pneumoniae TIGR4] gi|148985134|ref|ZP_01818373.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP3-BS71] gi|148989260|ref|ZP_01820640.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP6-BS73] gi|148998669|ref|ZP_01826108.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP11-BS70] gi|149002606|ref|ZP_01827538.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP14-BS69] gi|149007103|ref|ZP_01830772.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74] gi|168486559|ref|ZP_02711067.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1087-00] gi|168575694|ref|ZP_02721609.1| excinuclease ABC, B subunit [Streptococcus pneumoniae MLV-016] gi|182684034|ref|YP_001835781.1| excinuclease ABC subunit B [Streptococcus pneumoniae CGSP14] gi|221231933|ref|YP_002511085.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae ATCC 700669] gi|225854704|ref|YP_002736216.1| excinuclease ABC subunit B [Streptococcus pneumoniae JJA] gi|237649939|ref|ZP_04524191.1| excinuclease ABC subunit B [Streptococcus pneumoniae CCRI 1974] gi|237822511|ref|ZP_04598356.1| excinuclease ABC subunit B [Streptococcus pneumoniae CCRI 1974M2] gi|303258874|ref|ZP_07344853.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP-BS293] gi|303264228|ref|ZP_07350148.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS397] gi|303266141|ref|ZP_07352034.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS457] gi|303268132|ref|ZP_07353932.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS458] gi|307067887|ref|YP_003876853.1| DNA excision repair complex helicase [Streptococcus pneumoniae AP200] gi|18279297|sp|Q54986|UVRB_STRPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238691159|sp|B2IPP4|UVRB_STRPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764911|sp|B8ZJQ9|UVRB_STRPJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764913|sp|C1CEJ5|UVRB_STRZJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|14972720|gb|AAK75344.1| excinuclease ABC, subunit B [Streptococcus pneumoniae TIGR4] gi|147755506|gb|EDK62554.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP11-BS70] gi|147759217|gb|EDK66210.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP14-BS69] gi|147761407|gb|EDK68373.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74] gi|147922579|gb|EDK73697.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP3-BS71] gi|147925238|gb|EDK76317.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP6-BS73] gi|182629368|gb|ACB90316.1| excinuclease ABC subunit B [Streptococcus pneumoniae CGSP14] gi|183570451|gb|EDT90979.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1087-00] gi|183578231|gb|EDT98759.1| excinuclease ABC, B subunit [Streptococcus pneumoniae MLV-016] gi|220674393|emb|CAR68943.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae ATCC 700669] gi|225722985|gb|ACO18838.1| excinuclease ABC, B subunit [Streptococcus pneumoniae JJA] gi|301800159|emb|CBW32764.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae OXC141] gi|301801906|emb|CBW34630.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae INV200] gi|302639817|gb|EFL70273.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP-BS293] gi|302642349|gb|EFL72696.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS458] gi|302644311|gb|EFL74565.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS457] gi|302646040|gb|EFL76267.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS397] gi|306409424|gb|ADM84851.1| Helicase subunit of the DNA excision repair complex [Streptococcus pneumoniae AP200] gi|332074569|gb|EGI85043.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA17545] gi|332200686|gb|EGJ14758.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA41317] gi|332203087|gb|EGJ17155.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA47901] Length = 662 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|306833826|ref|ZP_07466951.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC 700338] gi|304424020|gb|EFM27161.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC 700338] Length = 663 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + VE + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I EE++ ++ + E EG+L+EAQR+ QR YD+EML G Sbjct: 250 PATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +ELEQ +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN A++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINRRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I D I + Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIR---DLIAISK 605 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ T+++ D +++K + + +K L+KQM AA+ L+FE AA++RD + LK+ Sbjct: 606 SSDTDVTEDIPDYNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661 >gi|149019230|ref|ZP_01834592.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72] gi|147931100|gb|EDK82079.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72] Length = 662 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDYMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|313903598|ref|ZP_07836988.1| Excinuclease ABC subunit B [Thermaerobacter subterraneus DSM 13965] gi|313466151|gb|EFR61675.1| Excinuclease ABC subunit B [Thermaerobacter subterraneus DSM 13965] Length = 695 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/656 (55%), Positives = 474/656 (72%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++ P GDQP AI + + +V LLG TG+GKT TMA VIE +Q P +V+A Sbjct: 4 FKVVAEFEPRGDQPKAIEAISRAFREGAQVVTLLGATGTGKTATMAWVIEQLQLPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL +EFK FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 64 HNKTLAGQLAAEFKQFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDALINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D IVV+SVSCIYG+G+ E Y +++ L++G+ + ++++L LV QY R Sbjct: 124 SATSSLFERKDVIVVASVSCIYGLGAPEDYRDLVLSLRVGNEMPREQILRKLVDIQYARN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD IEIFP+ + + A RV +FG++I+ ++E LTG+ + + + IY Sbjct: 184 DVDFQRGTFRVRGDVIEIFPASMAERAIRVELFGDEIDRLTEIDALTGEVLAYRDHVAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A++ I+ EL+ RL EL +LLEAQRLEQR YDLEML G C Sbjct: 244 PASHYVTHEWKLKRAIESIERELEQRLAELRARDKLLEAQRLEQRTRYDLEMLREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL +Y P L +DESHVTIPQ+ MY G+ RK +L EY Sbjct: 304 GIENYSRHLTGRAPGEPPYTLLDYFPRPFLCIIDESHVTIPQLRAMYEGEMSRKDSLIEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ + VSATPG +E E +IVEQI+RPTGL+DP +E Sbjct: 364 GFRLPSARDNRPLKFEEFWEKVGQVLFVSATPGPFEREHSD-VIVEQIVRPTGLLDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q+ED+ EI ++G R+L+T LTKRMAEDLT+YL E ++VRY+HSEV TLE Sbjct: 423 VRPTRGQIEDLLGEIRQRVERGHRVLVTTLTKRMAEDLTDYLREMGVKVRYLHSEVDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS T+LIQTIGRAAR Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSTTALIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YADTIT S++ AI+ET RRR+ Q E+N++H I PQ+V++ + +VI+ + Sbjct: 543 NVEGKVIMYADTITDSMRQAIEETYRRRKIQEEYNRRHGITPQTVRKAVRDVIEATHAAE 602 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ ++LS L + + +K LRK+M AA +L FE AA +RD I L++ Sbjct: 603 RPPEYLA--GKRLSDLPRHQIPEIVKKLRKEMEEAARDLEFERAALLRDMILELEA 656 >gi|118443519|ref|YP_877357.1| excinuclease ABC subunit B [Clostridium novyi NT] gi|189037961|sp|A0PYA5|UVRB_CLONN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|118133975|gb|ABK61019.1| excinuclease ABC, B subunit [Clostridium novyi NT] Length = 657 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/654 (54%), Positives = 468/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI + +GI EK Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKIHSPYKPTGDQPRAIKSISEGILKGEKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND IVV+SVSCIYG+G+ E Y ++ V L+ G ++ E++ LV QY+R Sbjct: 124 SATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIMRQLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFR GD ++IFP+ ++ RV FG++I++I EF LTG I + I+ Sbjct: 184 EINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNIISARKHALIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ L E +LLEAQR+ QR +D+EM+ G C Sbjct: 244 PASHFATSKDKLEIAIKKIEEELEDRVKVLTAEDKLLEAQRVRQRTNFDIEMMREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y P+D LLF+DESHVT+PQ+ MY GD RK L EY Sbjct: 304 GIENYSRVLDGRAPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F+E+ T+ VSATP +ELE + EQIIRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFDEFEGKLNQTVFVSATPAQYELEHSTN-VAEQIIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I +G R+L+T LTK+M+EDLT+YL I+ Y+HS + T++ Sbjct: 423 VKPIKGQIDDLYASIKETIDKGFRVLVTTLTKKMSEDLTDYLKSMGIKTEYLHSSIDTIK 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITK++ AI ET RRR+ Q+E+N KH I P++V + I +VI + ED Sbjct: 543 NSESKVIMYADNITKAMDKAISETNRRRKIQMEYNDKHGIVPRTVLKDIRDVIQTKVAED 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A ++ + + LSKK+ + + ++M +AA L FE AA +RDEI +LK Sbjct: 603 EAEYKVNNNTDK--LSKKEIEKLINKYEEEMKVAAKELQFERAAELRDEILKLK 654 >gi|257126291|ref|YP_003164405.1| excinuclease ABC subunit B [Leptotrichia buccalis C-1013-b] gi|257050230|gb|ACV39414.1| excinuclease ABC, B subunit [Leptotrichia buccalis C-1013-b] Length = 657 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/654 (54%), Positives = 479/654 (73%), Gaps = 5/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI ++++ + Q+LLGVTGSGKTFT+A VIE + RPA++MA Sbjct: 3 FKIHSKFQPTGDQPQAIQKIVENLEDGITDQILLGVTGSGKTFTVANVIEKINRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN++ID++RH Sbjct: 63 PNKTLAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIMQTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D I+V+SVS IYG+GS E+Y + + + + E+ EL+ L+ +Y+R Sbjct: 123 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVETGFERNELIKRLISLRYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +++ PS+ +D +R FG+D+E ISE LTGQKIRN++ I I Sbjct: 183 DIAFERGKFRVKGDILDLHPSY-QDTGYRFEFFGDDLESISEINTLTGQKIRNIKRITIM 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+T T + IK+E++ R+ +KEG+LLEAQR+EQR YDLEM+E G C+ Sbjct: 242 PATHYLTNEDT-KVMFESIKKEMEERVNFFQKEGKLLEAQRIEQRTKYDLEMIEEIGYCK 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYLTG++ GE P TL +Y PED ++F+DESH+++PQI+GMY+GD RK +L + Sbjct: 301 GVENYSRYLTGKSEGEAPDTLIDYFPEDLVVFLDESHISVPQINGMYKGDRARKQSLIDN 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ P + +SATP +ELE G +VEQ++RPTG+V+P ++ Sbjct: 361 GFRLPSAYDNRPLKFEEFFGKIPQVVYISATPSDYELEHSNGEVVEQLVRPTGIVEPSID 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEI + RIL+T LTK+MAE+LT+Y E I+V+YMHS++ TLE Sbjct: 421 IRETKNQIDDLMDEIKTRTARKERILVTTLTKKMAEELTDYYLEYGIKVKYMHSDIDTLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR LR G+FDVLVGINLLREGLDIPE LVAIL+ADKEG+LRS+ SLIQT+GRAAR Sbjct: 481 RTEIIRGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTMGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV VILYAD IT S+Q AIDE RRRE Q ++N ++NINP+S+ +I E I +E Sbjct: 541 NVEGHVILYADRITGSMQEAIDEVNRRREVQEKYNLENNINPKSIVREIAESIVDYEIEK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 N +I + S+K + +K L KQ+ A+ LNFEEA ++RD++ LK Sbjct: 601 ENEANKAIKQYK---SEKDIEKEIKKLDKQIKKLAEELNFEEAIKLRDKMNELK 651 >gi|153854|gb|AAA27020.1| uvs402 protein [Streptococcus pneumoniae] Length = 668 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/669 (53%), Positives = 481/669 (71%), Gaps = 5/669 (0%) Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186 R + NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM+ Sbjct: 3 RGILMINHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMS 61 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246 +VI + +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIE Sbjct: 62 QVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIE 121 Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 K+SS+N++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + Sbjct: 122 KDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRD 181 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366 +LL+ LV Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E L Sbjct: 182 KLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEAL 241 Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426 TGQ + V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR Sbjct: 242 TGQVLGEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRT 301 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486 YD+EML G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GM Sbjct: 302 EYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGM 361 Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546 Y GD RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I E Sbjct: 362 YNGDRSRKKMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-E 420 Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606 QIIRPTGL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E Sbjct: 421 QIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMG 480 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 I+V+YMHS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR Sbjct: 481 IKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLR 540 Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726 ++ LIQTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K Sbjct: 541 NERGLIQTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIK 600 Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 ++I ++I + A + +D SL+K++ K +K L KQM A + L+FE AA+I Sbjct: 601 KEIRDLI-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQI 657 Query: 787 RDEIKRLKS 795 RD + +K+ Sbjct: 658 RDMMLEVKA 666 >gi|296876387|ref|ZP_06900439.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis ATCC 15912] gi|296432677|gb|EFH18472.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis ATCC 15912] Length = 662 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/658 (54%), Positives = 479/658 (72%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + +V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQIAYNEEHGIVPQTIKKEIRDLISVTKAVA 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ +I+ SL++++ K +K L+ QM A + L+FE AA+IRD + +K+ Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|118463533|ref|YP_882325.1| excinuclease ABC subunit B [Mycobacterium avium 104] gi|118164820|gb|ABK65717.1| excinuclease ABC, B subunit [Mycobacterium avium 104] Length = 722 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/690 (53%), Positives = 482/690 (69%), Gaps = 31/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 32 FEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 92 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+L++G V + LL LV QY R Sbjct: 152 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGTEVPRDALLRLLVDVQYTRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG IR V++++I+ Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVIRQVDSLRIF 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I++EL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 271 PATHYVAGPERMAHAISTIEQELAERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 331 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 391 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 451 VKPTKGQIDDLIGEIRKRTEADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT+S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D + E Sbjct: 571 NVSGEVHMYADTITESMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREA 630 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + I + + S+S+ + G+A +K L QM Sbjct: 631 DDTETVEIGSGR-SMSRGRRAQGEPGRAVSAGIVEGRDTTNMPRAELADLIKDLTAQMMA 689 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 690 AARDLQFELAARFRDEIADLKKE--LRGMD 717 >gi|41407433|ref|NP_960269.1| excinuclease ABC subunit B [Mycobacterium avium subsp. paratuberculosis K-10] gi|254775593|ref|ZP_05217109.1| excinuclease ABC subunit B [Mycobacterium avium subsp. avium ATCC 25291] gi|41395785|gb|AAS03652.1| UvrB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 722 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/690 (53%), Positives = 482/690 (69%), Gaps = 31/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 32 FEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 92 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+L++G V + LL LV QY R Sbjct: 152 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGTEVPRDALLRLLVDVQYTRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG IR V++++I+ Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVIRQVDSLRIF 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I++EL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 271 PATHYVAGPERMAHAISTIEQELAERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 331 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 391 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 451 VKPTKGQIDDLIGEIRKRTEADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT+S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D + E Sbjct: 571 NVSGEVHMYADTITESMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREA 630 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + I + + S+S+ + G+A +K L QM Sbjct: 631 DDTDTVEIGSGR-SMSRGRRAQGEPGRAVSAGIVEGRDTTNMPRAELADLIKDLTAQMMA 689 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 690 AARDLQFELAARFRDEIADLKKE--LRGMD 717 >gi|94266611|ref|ZP_01290292.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1] gi|93452757|gb|EAT03298.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1] Length = 665 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/653 (55%), Positives = 462/653 (70%), Gaps = 4/653 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +++ P+GDQP AI L +G+ + Q+LLGVTGSGKTFTMA+VI RPA+V+ Sbjct: 1 MFDLVSEFAPAGDQPRAIELLSRGVMAGTPHQVLLGVTGSGKTFTMAQVIAETSRPALVL 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSEFK FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MR Sbjct: 61 APNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDQMR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H ATR+LL R D I+V+SVSCIYG+GS E Y M + L++G+ E+ LV Y+R Sbjct: 121 HGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMNLALQVGEDYPPAEIQRRLVHMLYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV GD +EIFP H +D A RV +FG+ IE I PL G +E + + Sbjct: 181 NDYSFHRGTFRVRGDVVEIFPVHEDDRALRVELFGDTIEAIRVVDPLRGVVHEELEEVTV 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SH+VT + + A+K IK EL RL EL RLLEAQRLEQR +DLEML+ G C Sbjct: 241 FPGSHFVTSKERQDQAIKTIKAELTQRLAELHANKRLLEAQRLEQRTMFDLEMLQELGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ T PG PPPTL +Y P+D LLF DESHV IPQ+ GMYRGD RK TL E Sbjct: 301 HGIENYSRHFTRLPPGAPPPTLLDYFPDDYLLFTDESHVAIPQVRGMYRGDRSRKETLVE 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E++ I VSATPG ELE G +VEQIIRPTGL+DP + Sbjct: 361 YGFRLPSALDNRPLMFDEFSARVHQAIYVSATPGDHELEISGGRVVEQIIRPTGLMDPKI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A++QV+D+ EI AQ+ IL+T LTKRMAEDL EY +RVRY+HS++KTL Sbjct: 421 EVRPAQSQVDDLLAEIRNRAQRDEAILVTTLTKRMAEDLCEYYRNIEVRVRYLHSDIKTL 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+E+IRDLR ++DVLVGINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQT GRAA Sbjct: 481 QRMELIRDLRRREYDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTCGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + VILY D I+ ++ I ET RRRE Q E+N++H I P +++ KI +++ I + Sbjct: 541 RNAHGMVILYGDKISAAMAATIAETERRREIQAEYNREHGITPATIRSKIKDLLATIYEQ 600 Query: 740 DAATTNI---SIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D T + S+ + S+++ + +K L K+M AA L FE+AA +RD Sbjct: 601 DYTTVELPEESVAEETPRFRSREELRREIKELEKEMTRAARELAFEDAAELRD 653 >gi|290474038|ref|YP_003466912.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus bovienii SS-2004] gi|289173345|emb|CBJ80122.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus bovienii SS-2004] Length = 672 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/660 (55%), Positives = 476/660 (72%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 6 FKLHSDFEPGGDQPDAIRKLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 66 PNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G +SY +M++ L G ++Q+ +L L + QY R Sbjct: 126 SATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTDGMLIDQRAILHRLAELQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ + A RV +F +++E +S F PLTGQ NV +Y Sbjct: 186 DQAFQRGTFRVRGEVIDIFPAESNEHALRVELFDDEVERLSLFDPLTGQIQYNVPRYTVY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL+ R L +LLE QR+ QR +DLEM+ G C Sbjct: 246 PKTHYVTPRERITQAMEDIKVELEQRRKMLLASDKLLEEQRITQRTQFDLEMMNELGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR GEPPPTLF+Y+ D LL VDESHVTIPQI GMYRGD RK TL +Y Sbjct: 306 GIENYSRYLSGRAEGEPPPTLFDYLAADGLLVVDESHVTIPQIGGMYRGDRSRKETLVDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ +VEQ++RPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGRYELEKSGNELVEQVVRPTGLIDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A++ R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 426 VRPVATQVDDLLSEIRIRAEKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 486 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI- 736 N++ K ILY D IT S+ AI ET RRR KQ N++H I P+ + +KI +++ P+ Sbjct: 546 NLHGKAILYGDRITDSMAKAIGETERRRAKQQAFNEEHGIVPKGLNKKIGDLLKIGQPVS 605 Query: 737 -LLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + IS D LS K+ + ++ L ++M+ A +L FE+AA IRD+++ L+ Sbjct: 606 GKGKAKGRGKISPDTDDYRKLSAKELENKIRELEEKMYQYARDLEFEQAANIRDQVQALR 665 >gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille] gi|151279852|gb|ABR88262.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille] Length = 696 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/669 (53%), Positives = 480/669 (71%), Gaps = 8/669 (1%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 + +K +TF F++ + P+GDQP AIA+L++GI Q LLGVTGSGKT+T+A V Sbjct: 12 DEAKVVTFPNSPFRLHQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVTGSGKTYTVANV 71 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 I M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+ Sbjct: 72 IARMGRPAIVFAPNKTLAAQLYSEFREFFPENAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SSINE I++MR S T+SL+ER D +++++VS IYGIG+ Y QMI+ L+ D V Q+++ Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTLRAKDKVSQRDV 191 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 ++ L+ QY R +I RGTFRV GD+I+IFP+ ++A R+ MF ++IE + F PLTG Sbjct: 192 IARLIAMQYTRNEIDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEIESLQLFDPLTG 251 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + + +Y SHYVTPR T+ A++ IK+EL+ RL KE +L+E QRLEQR + Sbjct: 252 RVKQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKESKLVEEQRLEQRTRF 311 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEM++ G + IENYSR+L+G G+PPPTL +Y+P+D+L+F+DESHV + Q++GMY Sbjct: 312 DLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESHVLMGQLNGMYN 371 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L +YGFRLPS +DNRPLRF+E+ + VSATP +E +VEQ+ Sbjct: 372 GDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYENTHADQ-VVEQV 430 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 +RPTGLVDP + +R A TQV+D+ EI ++ R+L+T LTKRMAE LTE+L + I+ Sbjct: 431 VRPTGLVDPLISVRPASTQVDDLMSEITDRVKKNERVLVTTLTKRMAEQLTEFLSDNGIK 490 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 550 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARN+ ILY D +T S++ AIDET RRR KQ+ N +NI P +K+ Sbjct: 551 RSLIQTIGRAARNLTGMAILYGDKVTDSMRRAIDETERRRAKQIAFNTANNITPIGIKKH 610 Query: 729 IMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I E+ID + A + + A+ ++S+K+ +K L K M A NL FE+AA+ Sbjct: 611 IRELIDGVYSPQEARLELQVAQEHAKYEAMSEKQVSKEIKRLEKLMLGHAKNLEFEKAAQ 670 Query: 786 IRDEIKRLK 794 +RD+++ LK Sbjct: 671 VRDQLRILK 679 >gi|328952008|ref|YP_004369342.1| UvrABC system protein B [Desulfobacca acetoxidans DSM 11109] gi|328452332|gb|AEB08161.1| UvrABC system protein B [Desulfobacca acetoxidans DSM 11109] Length = 663 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/655 (55%), Positives = 467/655 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P GDQP AI QL GI + Q+LLGVTGSGKTFT+A VI + P +V+A Sbjct: 5 FQLVSPFQPQGDQPQAIRQLAAGIKTGTAHQVLLGVTGSGKTFTVANVIAQVNLPTLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EF+ FFPHNAVEYFVSYYDYYQPEAY+P+ D YIEK+SSINE IDRMRH Sbjct: 65 PNKTLAAQLYGEFREFFPHNAVEYFVSYYDYYQPEAYIPQADLYIEKDSSINEAIDRMRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL+R D I+V+SVSCIYG+G+ E+Y M++ L+ G ++E+ + LV+ Y+R Sbjct: 125 SATRSLLDRQDVIIVASVSCIYGLGAPEAYQGMLLYLEAGMIKSREEVQAKLVEILYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FR GD +EIFP++ ED A R+ +G+ +E I E PL Q + +E I IY Sbjct: 185 DIDFHRGVFRARGDRLEIFPAYEEDRAIRIDFWGDVVESIQEIDPLRRQSQKKLEKIAIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A+ I+ EL RL + +G+LLEAQRL +R +DLEML G C Sbjct: 245 PASHYVTPDSRRQEALVAIEAELHERLAWFKNQGKLLEAQRLWERTRFDLEMLREMGFCH 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGE PPTL +Y+P SL+ +DESH+++PQ+ GMY GD RK TL EY Sbjct: 305 GIENYSRHLTGRQPGEAPPTLLDYLPRKSLVVIDESHISVPQLRGMYNGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ I VSATPG +ELE+ QG +VEQI+RPTGL+DP + Sbjct: 365 GFRLPSALDNRPLNFSEFEGRVQQVIYVSATPGPYELEKAQGRVVEQIVRPTGLIDPKIT 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A QV+D+ EI + + R+L+T LTKR+AEDLTEY ++VRY+HS++ TLE Sbjct: 425 VKPATNQVDDLLGEIRIRLGRQERVLVTTLTKRLAEDLTEYYQNLGLKVRYLHSDITTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG F+VL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT GRAAR Sbjct: 485 RMEIIRDLRLGVFEVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +VN +V LYAD +T S+Q A+ ET RRR++Q +N++H I P ++++ I +++ + +D Sbjct: 545 HVNGEVFLYADRVTPSMQAALKETQRRRQRQRAYNRQHGITPTTIQKGIQDILASVYEKD 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + + L + HL L+K+M AA L FE AA +RD IK L+S Sbjct: 605 YVTVAAAQEEPAPYLLPQDIPRHLARLKKEMQAAAKKLEFERAAELRDRIKSLES 659 >gi|323127535|gb|ADX24832.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 663 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 474/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVDHLILF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL+ +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELEEQLKVFETEGKLLEAQRLRQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I + Sbjct: 549 NADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISISKAAE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++D + +S S++ K +K+L+KQM AA+ L+FE AA+IRD I LK Sbjct: 609 SDVAETAVDYETMSRSER--KEAIKTLQKQMQEAAELLDFELAAQIRDMILELK 660 >gi|312866187|ref|ZP_07726408.1| excinuclease ABC, B subunit [Streptococcus downei F0415] gi|311098591|gb|EFQ56814.1| excinuclease ABC, B subunit [Streptococcus downei F0415] Length = 663 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/661 (54%), Positives = 476/661 (72%), Gaps = 15/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FHLVSKYQPAGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEIFRDQLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ + A+RV FG++I+ I E LTG + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDQHAFRVEFFGDEIDRIREIDALTGHNLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFMTNDEHMEVAISRIQAELQQQLQLFESEGKLLEAQRLKQRTDYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINDRVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE L+AILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T S+Q A+DET RRRE Q+ +N++H I PQ++K++I ++I Sbjct: 549 NSQGHVIMYADTVTDSMQKAMDETARRREIQMAYNEEHGIVPQTIKKEIRDLI------- 601 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T S D+Q ++SKK+ + +K L+KQM AA+ L+FE AA+IRD + LK Sbjct: 602 -AITKTSQDSQVAEEVDVSTMSKKERQETIKKLQKQMQEAAELLDFELAAQIRDMVLELK 660 Query: 795 S 795 + Sbjct: 661 A 661 >gi|251782717|ref|YP_002997020.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391347|dbj|BAH81806.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 663 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 474/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVDHLILF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL+ +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELEEQLKVFEAEGKLLEAQRLRQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I + Sbjct: 549 NADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISISKAAE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++D + +S S++ K +K+L+KQM AA+ L+FE AA+IRD I LK Sbjct: 609 SDVAETAVDYETMSRSER--KEAIKTLQKQMQEAAELLDFELAAQIRDMILELK 660 >gi|322375330|ref|ZP_08049843.1| excinuclease ABC subunit B [Streptococcus sp. C300] gi|321279593|gb|EFX56633.1| excinuclease ABC subunit B [Streptococcus sp. C300] Length = 662 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+ E+ D I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EIRDLIAVTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 606 AVSKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|148993848|ref|ZP_01823250.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68] gi|168489066|ref|ZP_02713265.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP195] gi|147927673|gb|EDK78698.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68] gi|183572586|gb|EDT93114.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP195] gi|332073577|gb|EGI84056.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA17570] Length = 662 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/662 (54%), Positives = 479/662 (72%), Gaps = 5/662 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H+I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMTYNEEHDIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LK 794 +K Sbjct: 658 VK 659 >gi|15903161|ref|NP_358711.1| excinuclease ABC subunit B [Streptococcus pneumoniae R6] gi|116516486|ref|YP_816567.1| excinuclease ABC subunit B [Streptococcus pneumoniae D39] gi|30913391|sp|Q8DPK7|UVRB_STRR6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|122278547|sp|Q04K81|UVRB_STRP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|15458744|gb|AAK99921.1| Exonuclease ABC - subunit B [Streptococcus pneumoniae R6] gi|116077062|gb|ABJ54782.1| excinuclease ABC, B subunit [Streptococcus pneumoniae D39] Length = 662 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|284990473|ref|YP_003409027.1| excinuclease ABC subunit B [Geodermatophilus obscurus DSM 43160] gi|284063718|gb|ADB74656.1| excinuclease ABC, B subunit [Geodermatophilus obscurus DSM 43160] Length = 704 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/681 (53%), Positives = 489/681 (71%), Gaps = 28/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQPAAI L + ++S EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 14 FRVVSEFQPSGDQPAAIEALAEKVNSGEKDTVLLGATGTGKSATTAWLIEQVQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P AVEYFVSYYDYYQPEAYVP+TDTYIEK+SS+NE+++R+RH Sbjct: 74 PNKTLAAQLANEFRELLPDAAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSVNEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVS+VSCIYG+G+ E Y +++K+G+ ++ ELL +LV +QY R Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRALKIKVGEERDRDELLRTLVTEQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+FP + E++A R+ MFG+++E + +PLTG+ +R V+ + ++ Sbjct: 194 DLSFTRGTFRVRGDTIEVFPVY-EELACRIEMFGDEVERLYYLHPLTGEVVREVDELFVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL++RL ELE++G+LLEAQRL R TYD+EM+ G C Sbjct: 253 PATHYVAGPERMERAISTIEAELEVRLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG L +Y P+D LL +DESHVT+PQI GMY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRAPGTAGACLIDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ T+ +SATPG +EL + G +VEQ+IRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLKWEEFTDRIGQTVYLSATPGDYELGRTGGEVVEQVIRPTGLVDPEVL 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + ++ R+L+T LTK+MAEDLT+YL E I+VRY+HSEV TL Sbjct: 433 VKPTKGQIDDLVHEIRVRVEKDERVLVTTLTKKMAEDLTDYLLELGIKVRYLHSEVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 493 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGKSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +V +YADTIT S+ AI+ET RRREKQ+ +N++ I+PQ +++KI++++D I Sbjct: 553 NVSGQVHMYADTITPSMAQAIEETNRRREKQIAYNRERGIDPQPLRKKIVDILDGIYRAA 612 Query: 739 EDAATTN-ISIDAQQLS--------LSKKKG------------KAHLKSLRKQMH----L 773 EDA + + +Q S LS KK +A L L QM+ Sbjct: 613 EDAESIELVGGSGRQQSRGKAPVPGLSSKKAAKAGGIDVQGLPRAELADLITQMNDQMLA 672 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE AAR+RDE+ LK Sbjct: 673 AARELQFEVAARLRDELTELK 693 >gi|312135237|ref|YP_004002575.1| excinuclease ABC subunit B [Caldicellulosiruptor owensensis OL] gi|311775288|gb|ADQ04775.1| excinuclease ABC, B subunit [Caldicellulosiruptor owensensis OL] Length = 661 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/663 (55%), Positives = 487/663 (73%), Gaps = 17/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L+ G + ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A R+ FG++IE I+EF +TG+ I + I+ Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFNVVTGEVIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR P PP TL +Y P+D ++F+DESHVTIPQ+ MY GD RK L EY Sbjct: 304 GIENYSRHLTGRPPESPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDRARKDALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +E+++ IVEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYEIKKSSR-IVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LT+YL + I+VRYMHS++ T+E Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIKVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+VK+ I ++I+ Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVKKGIRQIIE------ 596 Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 AT +++ + ++ +++K++ K ++K L ++M A L FE+AA++RD+I Sbjct: 597 -ATVSVAEEEEKYEVVEKDIVKNMTKEEIKEYIKELEQEMKKLAIELEFEKAAKVRDKIF 655 Query: 792 RLK 794 L+ Sbjct: 656 ELR 658 >gi|134300897|ref|YP_001114393.1| excinuclease ABC subunit B [Desulfotomaculum reducens MI-1] gi|134053597|gb|ABO51568.1| Excinuclease ABC subunit B [Desulfotomaculum reducens MI-1] Length = 672 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/654 (53%), Positives = 478/654 (73%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++D+ P GDQP AI +L+ GI + Q+LLG TG+GKTFTMA +I+ ++RP +++A Sbjct: 3 FKLKSDFSPRGDQPRAIEKLVAGIDKGLRHQVLLGATGTGKTFTMANIIQEVKRPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SE K FFP N+VEYFVSY+DYYQPEAY+P TDTYIEK+SS+N++ID++RH Sbjct: 63 PNKTLAAQLCSEMKEFFPENSVEYFVSYFDYYQPEAYIPHTDTYIEKDSSLNDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E+Y +++ L++G + ++ +L LV QY+R Sbjct: 123 SATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGTYDRDAILRKLVDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEIFP++ + A RV +FG++++ + E +TG+ + + I ++ Sbjct: 183 DIDFSRGKFRVRGDVIEIFPANASERALRVELFGDEVDRLLEIDVVTGEILGQRQHIAVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I+ EL+ RL EL +LLEAQRL+QR YDLEM+ G C Sbjct: 243 PASHFVTAEDNMKRAITTIEAELEQRLQELRAADKLLEAQRLQQRTQYDLEMMAEVGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGE P TL ++ PED LL +DESHV +PQI GMY GD RK TL E+ Sbjct: 303 GIENYSRHLTGRAPGESPFTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I VSATPG +E E Q IVEQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLKFKEFEEKVNQVIYVSATPGKYEFEH-QEQIVEQIIRPTGLIDPEIF 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI L ++ R+L+T LTK+MAEDLT+Y E +RVRY+HS++ T+E Sbjct: 422 IRPTKGQIDDLLGEIRLRVERDERVLVTTLTKKMAEDLTDYFKENGVRVRYLHSDIHTME 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQTIGRAAR Sbjct: 482 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AI ET RRR+ Q+E+N+KHNI P+++++ I +VI+ + Sbjct: 542 NAEGRVIMYADKMTDSMKKAIGETNRRRKIQMEYNRKHNITPETIRKAIRDVIEATRAAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++ L+K + K + L K+M +A +L FE AA++RD + L+ Sbjct: 602 EKAPYVA-QSKAGKLTKTELKKMIAKLEKEMKESAKHLEFERAAQLRDALIELR 654 >gi|169830504|ref|YP_001716486.1| excinuclease ABC subunit B [Candidatus Desulforudis audaxviator MP104C] gi|169637348|gb|ACA58854.1| excinuclease ABC, B subunit [Candidatus Desulforudis audaxviator MP104C] Length = 674 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/654 (54%), Positives = 462/654 (70%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI L++G+ + Q+LLGVTGSGKT+TMA+VI +QRP +V+A Sbjct: 4 FKLVSDYVPRGDQPQAIENLVRGLERGLRHQVLLGVTGSGKTYTMAQVISRVQRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAY+P +D YIEK++SINE+ID++RH Sbjct: 64 PNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYLPSSDMYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E Y ++V L+ ++ +L LV QY+R Sbjct: 124 SATSSLFERRDVIIVASVSCIYGLGDPEEYRNLVVSLRRNGGYDRDAVLRKLVSIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ + A R+ FG+++E I EF LTG+ + + + I Sbjct: 184 DINFGRGRFRVRGDVLEVFPAASGERALRIEFFGDEVERILEFDALTGEVLGERQHVSIL 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + L+ A+ I+ EL RL EL +LLEAQRLEQR YDLEML G C+ Sbjct: 244 PASHYATSKDRLDRAVTAIETELTERLAELRAANKLLEAQRLEQRTNYDLEMLRELGYCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG PP TL +Y P+D L+ VDESH+TIPQI GMY GD RK L E+ Sbjct: 304 GIENYSRHLTGREPGAPPFTLLDYFPDDLLIIVDESHITIPQIGGMYEGDRSRKVALVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATPG WEL+ +VEQI+RPTGLVDP + Sbjct: 364 GFRLPSAFDNRPLTFSEFMARVRQGVYVSATPGPWELKHSAA-VVEQIVRPTGLVDPEMV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI + R+L+T LTKRMAEDL +Y E ++VRY+HSE+ TLE Sbjct: 423 VRPTRGQIDDLLGEIRQRVARNERVLVTTLTKRMAEDLCDYFRELGLKVRYLHSEINTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVA+LDADKEG+LRS+ SLIQT GRAAR Sbjct: 483 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAVLDADKEGYLRSERSLIQTAGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N KVILYAD IT S++ A+DET RRRE+Q+ N+ H I PQ+V++ + VI+ + Sbjct: 543 NLNGKVILYADQITGSMRRALDETERRRERQMAFNRAHGITPQTVQKAVRSVIEATRAAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++L+ S+ K + L K M AA +L FE AA++RD + L+ Sbjct: 603 TQAPYYAVSEKRLTRSEL--KKLIARLEKDMRYAARHLEFERAAQLRDALIELR 654 >gi|290967948|ref|ZP_06559498.1| excinuclease ABC, B subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782087|gb|EFD94665.1| excinuclease ABC, B subunit [Megasphaera genomosp. type_1 str. 28L] Length = 713 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/655 (54%), Positives = 467/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP A+A L GI S + Q+LLG TG+GKT+TMAKVIEA+Q+P +V+A Sbjct: 17 FHVVAPYAPTGDQPQAVASLTAGIRSGQWAQVLLGATGTGKTYTMAKVIEAVQKPTLVIA 76 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N V YFVSYYDYYQPEAY+ TDTYIEK+S+IN++ID++RH Sbjct: 77 HNKTLAAQLCSEFKQFFPNNEVAYFVSYYDYYQPEAYIAATDTYIEKDSAINDEIDKLRH 136 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS+++V L++G EQ E+L LV QY R Sbjct: 137 SATMSLFERRDVIIVASVSCIYGLGDPEDYSELVVSLRLGQEKEQTEILRKLVAVQYTRS 196 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV GD+IE+FP ++ R+ MFG++IE ++E LTG+ + + + IY Sbjct: 197 QMTLQRGTFRVLGDTIEVFPVSFDNTVVRIEMFGDEIERLTEVDALTGEVVAERKHVAIY 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A+ I+ EL RL EL+++G+LLEAQRLEQR YD+EM+ G C Sbjct: 257 PASHYVTTKEKMTRAVATIEAELAARLQELKRDGKLLEAQRLEQRTRYDIEMMMEMGYCS 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GE P TL +Y PED L+ VDESHVT+PQ+ MY GD RK L EY Sbjct: 317 GIENYSRHLAGRKAGETPYTLLDYFPEDYLIMVDESHVTLPQLRAMYAGDRSRKENLIEY 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +E+E + QIIRPTGL DP +E Sbjct: 377 GFRLPSALDNRPLRFEEFVERINQIIYVSATPGPYEMEAATN-VAHQIIRPTGLTDPTIE 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L ++ R+L+T LTK+MAEDLTEY+ E +R+RY+HS++ T Sbjct: 436 VRPIAGQLDDLLGEIRLRTERKERVLVTTLTKKMAEDLTEYMREMGVRIRYLHSDIATFA 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T+ IQT+GRAAR Sbjct: 496 RAEIIRDLRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSYTAFIQTMGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S++ AI ET RRR Q +NK+H+I PQ+VK+ EV+D I L Sbjct: 556 NARGKVIMYADRMTDSMRRAIAETARRRAVQEAYNKEHHIVPQTVKK---EVVDLIELTK 612 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A AQQ + L+ + + ++++ +QM+ A L FE+AA +RD + L+ Sbjct: 613 VAEAPRPYGAQQEAPLTPEALQKVIRTVTRQMNEAVKQLKFEQAAVLRDRLGSLR 667 >gi|322412040|gb|EFY02948.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 663 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 474/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVDHLILF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL+ +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELEDQLKVFEAEGKLLEAQRLRQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I + Sbjct: 549 NADGHVIMYADKVTESMQRAIDETARRREIQMAYNETHGIIPQTIKKDIRDLISISKAAE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++D + +S S++ K +K+L+KQM AA+ L+FE AA+IRD I LK Sbjct: 609 SDVAETAVDYETMSRSER--KEAIKTLQKQMQEAAELLDFEMAAQIRDMILELK 660 >gi|301794321|emb|CBW36746.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae INV104] Length = 662 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/662 (54%), Positives = 479/662 (72%), Gaps = 5/662 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARIEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H+I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMTYNEEHDIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LK 794 +K Sbjct: 658 VK 659 >gi|149012289|ref|ZP_01833358.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75] gi|168484866|ref|ZP_02709811.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1873-00] gi|168491159|ref|ZP_02715302.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC0288-04] gi|168493160|ref|ZP_02717303.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC3059-06] gi|194396794|ref|YP_002037839.1| excinuclease ABC subunit B [Streptococcus pneumoniae G54] gi|225859033|ref|YP_002740543.1| excinuclease ABC subunit B [Streptococcus pneumoniae 70585] gi|226698341|sp|B5E4X3|UVRB_STRP4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|254764910|sp|C1C7L7|UVRB_STRP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|147763615|gb|EDK70550.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75] gi|172041982|gb|EDT50028.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1873-00] gi|183574497|gb|EDT95025.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC0288-04] gi|183576633|gb|EDT97161.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC3059-06] gi|194356461|gb|ACF54909.1| excinuclease ABC, B subunit [Streptococcus pneumoniae G54] gi|225719975|gb|ACO15829.1| excinuclease ABC, B subunit [Streptococcus pneumoniae 70585] gi|332201701|gb|EGJ15771.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA47368] Length = 662 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|332359692|gb|EGJ37509.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK355] Length = 662 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINVRVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SLSK++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLSKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|225860928|ref|YP_002742437.1| excinuclease ABC subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298229892|ref|ZP_06963573.1| excinuclease ABC subunit B [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254352|ref|ZP_06977938.1| excinuclease ABC subunit B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502764|ref|YP_003724704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TCH8431/19A] gi|254764915|sp|C1CR65|UVRB_STRZT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|225726381|gb|ACO22232.1| excinuclease ABC, B subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238359|gb|ADI69490.1| excinuclease ABC subunit B [Streptococcus pneumoniae TCH8431/19A] gi|327389474|gb|EGE87819.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA04375] Length = 662 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+ E+ D I + Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EIRDLIAVTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 606 AVSKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|312793615|ref|YP_004026538.1| excinuclease ABC subunit B [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180755|gb|ADQ40925.1| excinuclease ABC, B subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 661 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/663 (56%), Positives = 490/663 (73%), Gaps = 17/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L++G ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRLGMIKDRDEVIRELIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A R+ FG++IE I+EF +TG+ I + I+ Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR+PG PP TL +Y P+D ++F+DESHVTIPQ+ MY GD RK TL EY Sbjct: 304 GIENYSRHLTGRSPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL++ IVEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LTEYL + IRVRYMHS++ T+E Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+ Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVRKGIRQIIE------ 596 Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 AT +++ + ++ +++K++ + ++K L ++M A L FE+AA++RD+I Sbjct: 597 -ATVSVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIF 655 Query: 792 RLK 794 LK Sbjct: 656 ELK 658 >gi|156934731|ref|YP_001438647.1| excinuclease ABC subunit B [Cronobacter sakazakii ATCC BAA-894] gi|156532985|gb|ABU77811.1| hypothetical protein ESA_02566 [Cronobacter sakazakii ATCC BAA-894] Length = 691 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/664 (55%), Positives = 475/664 (71%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI ++ +G+ Q LLGVTGSGKTFTMA VI +QRP +V+A Sbjct: 23 FKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 83 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 143 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ +Y Sbjct: 203 DQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVY 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L + +LLE QRL QR +DLEM+ G C Sbjct: 263 PKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 323 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P T+ VSATPG++ELE+ G I++Q++RPTGL+DP +E Sbjct: 383 GFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDPIIE 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 443 VRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 503 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI ET RRREKQ +N++H I PQ + +K+++++ L E+ Sbjct: 563 NVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDIL--ALGEN 620 Query: 741 AATTNISIDAQQLSL----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + ++ + K + + L QM A NL FEEAA++RD++ Sbjct: 621 IAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRDKL 680 Query: 791 KRLK 794 +L+ Sbjct: 681 HQLR 684 >gi|289168043|ref|YP_003446312.1| excinuclease ABC-subunit B [Streptococcus mitis B6] gi|288907610|emb|CBJ22447.1| excinuclease ABC-subunit B [Streptococcus mitis B6] Length = 662 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQTELEEQLAVFENEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A N +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEENKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|209695340|ref|YP_002263269.1| excinuclease ABC subunit B [Aliivibrio salmonicida LFI1238] gi|226698331|sp|B6EGH8|UVRB_ALISL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|208009292|emb|CAQ79558.1| UvrABS system protein B (excinuclease ABC subunit B) [Aliivibrio salmonicida LFI1238] Length = 676 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/669 (52%), Positives = 482/669 (72%), Gaps = 17/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ +DY P+GDQP AI L +G+ + Q LLGVTGSGKTFT+A VI RP ++MA Sbjct: 5 YELVSDYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAKSGRPTVIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR Sbjct: 65 HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+++SVS IYG+G ++Y M++ L GD + Q+++L L + QYKR Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPQAYLSMMLHLSRGDIINQRDILRRLAELQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RGTFRV G+ +++FP+ E A R+ +F +++E IS+F PLTG I +++ I Sbjct: 185 DMAFERGTFRVRGEVLDVFPAESEHEAIRIELFDDEVERISKFDPLTGSIITKDMPRCTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK +L R EL +L+E QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPREKVLDAIEQIKVDLAERKKELLANNKLVEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GE PPTLF+Y+P+D LL +DESH+T+ QI MY+GD RK L E Sbjct: 305 SGIENYSRYLSGRPQGEAPPTLFDYLPKDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RF+E+ P TI VSATPG +E+E+ I EQ++RPTGL+DP + Sbjct: 365 YGFRLPSALDNRPMRFDEFEARAPQTIYVSATPGKYEIEKSGSDIAEQLVRPTGLLDPII 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + + G R+L+T LTKRM+EDLTEYL E ++VRY+HS++ T+ Sbjct: 425 EVRPVGTQVDDLLSEIRIRTKVGERVLVTTLTKRMSEDLTEYLAEHGVKVRYLHSDIDTV 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQ IGRAA Sbjct: 485 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQAIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K ILYAD IT S++ AI ET RRREKQ+ HN+ I P ++K+ + ++++ L Sbjct: 545 RNLEGKAILYADRITGSMEKAIGETERRREKQILHNEALGIVPTALKKNVADILE---LG 601 Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786 D I A ++ LS+ ++G ++ ++ L +M+ A +L FE+AA++ Sbjct: 602 DMTKNKRKIVAPKMKLSEVAEEGASYQSMTPQQLEKEVQRLEAKMYQHARDLEFEQAAKV 661 Query: 787 RDEIKRLKS 795 RDE+++L++ Sbjct: 662 RDEVEKLRN 670 >gi|322376794|ref|ZP_08051287.1| excinuclease ABC subunit B [Streptococcus sp. M334] gi|321282601|gb|EFX59608.1| excinuclease ABC subunit B [Streptococcus sp. M334] Length = 662 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNELVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|118581885|ref|YP_903135.1| excinuclease ABC subunit B [Pelobacter propionicus DSM 2379] gi|118504595|gb|ABL01078.1| Excinuclease ABC subunit B [Pelobacter propionicus DSM 2379] Length = 701 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/694 (51%), Positives = 479/694 (69%), Gaps = 37/694 (5%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ F ++TDY P GDQPAAIA+L++GI ++ Q+LLGVTGSGKTFT+A VI RPA+ Sbjct: 1 MSIFTLKTDYTPRGDQPAAIAELVEGIERGDQHQVLLGVTGSGKTFTVANVIARTGRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 ++APNK LAAQLY+E K FP NAVE+FVSYYDYYQPEAY+P +DT+IEK+S+IN++ID+ Sbjct: 61 LLAPNKTLAAQLYAEMKELFPDNAVEFFVSYYDYYQPEAYLPSSDTFIEKDSAINDEIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 MRHSATRSLL R D I+V+SVSCIYGIGS E+Y+ + + + G+ + LL LV QY Sbjct: 121 MRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYASLHIFFRQGEEYGRDTLLQKLVAIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D RGTFRV GD +E+FP++ D A R+ FG+++E ISE PL G ++ + Sbjct: 181 ERNDTDFHRGTFRVRGDVVEVFPAYDSDKALRIEFFGDEVESISEIDPLRGAVLQRLTKC 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY SHYV R TL A++ I+ +L R+ + LLEAQR+EQR +D+EM+E G Sbjct: 241 TIYPASHYVATRETLERAVEQIRVDLGERIRYFRENNMLLEAQRIEQRTFFDIEMMEEMG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 CQ IENYSRY GR GEPP TL +Y P+D +L+VDESH++IPQ+ GMYRGD RK TL Sbjct: 301 FCQGIENYSRYFDGRETGEPPYTLIDYFPDDFVLYVDESHISIPQVGGMYRGDRSRKETL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 YGFRLP+ +DNRPL F E+ + VSATP +ELE+ G+ VEQ+IRPTGL+DP Sbjct: 361 VNYGFRLPAALDNRPLNFREFEARVHQAVYVSATPADYELEKSNGVFVEQVIRPTGLLDP 420 Query: 558 PVEIRSART-----------------------------------QVEDVYDEINLAAQQG 582 +++R QV+D+ E+ +G Sbjct: 421 VIQVRPVTAGRQIPPSPPLKKGDLPSGDDEYPPFEKGGAGGMYGQVDDLLHEVRQTVAKG 480 Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 R+L+T LTKRMAE+LT Y E +R+RY+HS++ T+ER++I+RDLR+G+FDVLVGINLL Sbjct: 481 ERVLVTTLTKRMAEELTSYYGELGVRIRYLHSDIVTIERMQILRDLRMGEFDVLVGINLL 540 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 REGLD+PE LVAILDADKEGFLRS+ SLIQT GRAARN N +V++YAD+IT+S+Q ID Sbjct: 541 REGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAARNANGRVLMYADSITRSMQACID 600 Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI--DAQQLSLSKKKG 760 ET RRREKQL N++H I P++V++ + ++ I +D T +S ++ ++ K Sbjct: 601 ETQRRREKQLAWNQEHGITPETVRKSMQTILGSIEEKDYYTPKVSAAETPEEYGVAPKDI 660 Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +K LRK+M AA L+FE+AA +RD ++ L+ Sbjct: 661 PKLVKKLRKEMLGAAKQLDFEKAAELRDRVRTLE 694 >gi|315613251|ref|ZP_07888161.1| excision endonuclease subunit UvrB [Streptococcus sanguinis ATCC 49296] gi|315314813|gb|EFU62855.1| excision endonuclease subunit UvrB [Streptococcus sanguinis ATCC 49296] Length = 662 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|296164512|ref|ZP_06847083.1| excision endonuclease subunit UvrB [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900112|gb|EFG79547.1| excision endonuclease subunit UvrB [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 743 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/690 (52%), Positives = 476/690 (68%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 52 FEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 111 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 112 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 171 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+L +G V + LL LV QY R Sbjct: 172 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELSVGTEVPRDALLRLLVDVQYTRN 231 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG+++E + +PLTG IR V++++I+ Sbjct: 232 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVIRQVDSLRIF 290 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 291 PATHYVAGPERMAHAISTIEEELAARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 350 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 351 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 410 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 411 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQAGGEFVEQVIRPTGLVDPKVV 470 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 471 VKPTKGQIDDLIGEIRKRTDADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 530 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 531 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 590 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD+IT S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D + E Sbjct: 591 NVSGEVHMYADSITDSMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREA 650 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L +QM Sbjct: 651 DDTETVGVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTASMPRAELADLIKDLTEQMMA 710 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 711 AARDLQFELAARFRDEIADLKKE--LRGMD 738 >gi|89256132|ref|YP_513494.1| excinuclease ABC subunit B [Francisella tularensis subsp. holarctica LVS] gi|115314605|ref|YP_763328.1| excinuclease ABC subunit B [Francisella tularensis subsp. holarctica OSU18] gi|156502154|ref|YP_001428219.1| excinuclease ABC subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009835|ref|ZP_02274766.1| excinuclease ABC, B subunit [Francisella tularensis subsp. holarctica FSC200] gi|254369136|ref|ZP_04985148.1| DNA excision repair enzyme [Francisella tularensis subsp. holarctica FSC022] gi|290953268|ref|ZP_06557889.1| excinuclease ABC subunit B [Francisella tularensis subsp. holarctica URFT1] gi|295313510|ref|ZP_06804105.1| excinuclease ABC subunit B [Francisella tularensis subsp. holarctica URFT1] gi|89143963|emb|CAJ79184.1| DNA excision repair enzyme, subunit B (UvrABC system protein B) [Francisella tularensis subsp. holarctica LVS] gi|115129504|gb|ABI82691.1| excinuclease ABC subunit B [Francisella tularensis subsp. holarctica OSU18] gi|156252757|gb|ABU61263.1| excinuclease ABC, B subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122086|gb|EDO66226.1| DNA excision repair enzyme [Francisella tularensis subsp. holarctica FSC022] Length = 668 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/660 (53%), Positives = 476/660 (72%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI L+ GI++ + Q+LLGVTGSGKT+TMA VI+ Q+P +++A Sbjct: 4 FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK +FP N VEYFVSYYDYYQPEAYV +DTYIEK+SS+NE I++MR Sbjct: 64 HNKTLAAQLYSEFKQYFPDNVVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LERND I+V++VS IYG+G E Y QM++ LK+G+ + K+ + LV+ QY R Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV G+ ++IFP+ E A RV F ++IE IS LT +K++++ I+ Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++HYV + ++ IK+ELK R+ +KEG+LLEAQR+EQR YD+EM++ G C Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFKKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ GMY+GD RK+ L Y Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L P TI VSATP ++ELE+ Q V+Q+IRPTGL+DP V Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QVED EIN A + R+L+T LTK+M E+LTEYL E + VRY+HS++ T+E Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQ IGR AR Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQAIGRVAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D P + Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ + + +S G +K+L K+M A L FE+A IRD+I +K Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662 >gi|218885558|ref|YP_002434879.1| excinuclease ABC subunit B [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226695482|sp|B8DJT9|UVRB_DESVM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|218756512|gb|ACL07411.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 680 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/670 (53%), Positives = 466/670 (69%), Gaps = 21/670 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++TDY P GDQP AI Q++ I + Q+LLGVTGSGKTFTMA+VI RPA+V+A Sbjct: 6 FILRTDYEPRGDQPEAIGQIVSNIEAGVTDQVLLGVTGSGKTFTMAQVIARCGRPALVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++RH Sbjct: 66 PNKTLAAQLYNEFRQLFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G + L++ LV+ QY+R Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYAKLVIPVETGQRLSMDALITRLVEVQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EI P++ + A R+ FG+DI+ ISE PLTGQ + +V IY Sbjct: 186 DYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDAISEIDPLTGQVLASVGKTVIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV+ R L A+ I++EL RL EL+ RL+EAQRLEQR DLEM+E G C Sbjct: 246 PASHYVSDRDNLVRAISDIRDELGERLRELKGGNRLVEAQRLEQRTMLDLEMMEEMGYCN 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G+PP L +Y P+D LLFVDESH+T+ Q+ MY+GD RK+TL +Y Sbjct: 306 GVENYSRHLDGRKAGDPPSCLLDYFPDDFLLFVDESHITVSQVGAMYKGDRSRKSTLVDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ I VSATPG WEL++ QGI+ EQIIRPTGLVDP E Sbjct: 366 GFRLPSALDNRPLEFHEFLARLNQAIYVSATPGKWELDRSQGIVAEQIIRPTGLVDPITE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ E L A + R+L+T LTKRMAEDLTEY E + RY+HS++ T+E Sbjct: 426 VRPTKGQVDDLLGECRLRAARDERVLVTTLTKRMAEDLTEYFNEMGVAARYLHSDIDTME 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II+ LR +FDVLVGINLLREGLDIPE LV+ILDADKEGFLRS SLIQT GRAAR Sbjct: 486 RMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV +V++YAD +T+S+Q A+DET RRRE+Q +N+ H+I P ++++ + D I E Sbjct: 546 NVEGRVLMYADVVTRSMQAAMDETARRRERQTGYNEAHHIVPATIRKAVETPFDAIYAEA 605 Query: 740 ---------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 AA T + L+K+ ++ L + M AA L FE AA Sbjct: 606 AEAKGRKGKGRKGAAQAAETFAPWSSDPHELAKQ-----IQQLERDMREAAKELEFERAA 660 Query: 785 RIRDEIKRLK 794 +RD I+ L+ Sbjct: 661 ELRDRIRLLR 670 >gi|327330664|gb|EGE72410.1| excinuclease ABC subunit B [Propionibacterium acnes HL097PA1] Length = 701 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGGI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERANGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ R Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYDSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|225677199|ref|ZP_03788193.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590759|gb|EEH11992.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 588 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/585 (58%), Positives = 440/585 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI L+ G++S ++ Q+LLGVTGSGKTFTMA VI RPA++MA Sbjct: 3 FQIATRFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+ Sbjct: 63 HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SLLER D IVV+SVSCIYG+GS ESY MI+ L +G+ + + LS+L QYKR Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++IFPSH E+ AWR+S+FG++IEEISE +TG + V I I+ Sbjct: 183 DARFERGYFRVRGDIVDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NS+Y+TPR L A++ +K+EL RL + +++EA+RLEQR +D+EM+ TTG C+ Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL G G+PPPTLFEY+P++ +LFVDESHVT+PQ+ MY G+ RK L +Y Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKEVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F EW +RP T+ +SATPG +EL + + +EQ+IRPTGL DP Sbjct: 363 GFRLPSAFDNRPLKFGEWEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLTDPICI 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ ++Q++DV E + +G +L+T LTK+MAE+L EY+ E N++V Y+HS++ LE Sbjct: 423 VKPIKSQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIGALE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII LR + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RIEIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 N +VILYAD IT S+ A+ ET RRR+KQ HN HNI P+++ Sbjct: 543 NAEGRVILYADKITGSLDRALKETERRRKKQEVHNILHNIVPKTI 587 >gi|332523810|ref|ZP_08400062.1| excinuclease ABC, B subunit [Streptococcus porcinus str. Jelinkova 176] gi|332315074|gb|EGJ28059.1| excinuclease ABC, B subunit [Streptococcus porcinus str. Jelinkova 176] Length = 663 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/654 (53%), Positives = 473/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AIA+L+ I EK Q+LLG TG+GKTFTM++VI + +P +V+A Sbjct: 10 FHLVSKYQPSGDQPQAIAELVDNIEGGEKAQILLGATGTGKTFTMSQVINQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + E + ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGEAEHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDEHMEASIAKIQAELEEQLQLFESEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q +I EQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMAQTDTVI-EQIIRPTGLLDPIIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + +G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINTRSAKGERCFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S+Q AIDET RRR Q+ +N+KH I PQ++K+ I ++I + + Sbjct: 549 NSEGRVIMYADKMTDSMQKAIDETARRRHIQMAYNEKHGIVPQTIKKDIRDLI--AITKG 606 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ S+++ + K +K L+KQM AA+ L+FE AA IRD I LK Sbjct: 607 TGSESVEESTDYASMNRTERKEAIKKLQKQMQEAAELLDFELAAEIRDLILELK 660 >gi|306829598|ref|ZP_07462788.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249] gi|304428684|gb|EFM31774.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249] Length = 662 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L E+EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEREGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|269797771|ref|YP_003311671.1| excinuclease ABC subunit B [Veillonella parvula DSM 2008] gi|269094400|gb|ACZ24391.1| excinuclease ABC, B subunit [Veillonella parvula DSM 2008] Length = 725 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/687 (53%), Positives = 482/687 (70%), Gaps = 40/687 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L +GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+I+IFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + +N A++ I+ EL +L +L+ RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVT+PQI MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E + I EQIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q AIDET RRR Q +N +HNI P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTNISIDAQQLSLSKKKGK----------AH-----------------------LKSL 767 T + LS KKGK H ++ L Sbjct: 613 DMVT------EGKGLSPKKGKQKKSSEGMDHGHESYVQDTSAPKVADITLEELYNKIEEL 666 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794 +QM AA L FE AA++RD++ L+ Sbjct: 667 DRQMKAAAKQLEFESAAKLRDQLGVLR 693 >gi|313827874|gb|EFS65588.1| excinuclease ABC subunit B [Propionibacterium acnes HL063PA2] gi|315108277|gb|EFT80253.1| excinuclease ABC subunit B [Propionibacterium acnes HL030PA2] Length = 701 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/690 (52%), Positives = 488/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERVHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ R Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|289427109|ref|ZP_06428825.1| excinuclease ABC, B subunit [Propionibacterium acnes J165] gi|295130375|ref|YP_003581038.1| excinuclease ABC, B subunit [Propionibacterium acnes SK137] gi|289159578|gb|EFD07766.1| excinuclease ABC, B subunit [Propionibacterium acnes J165] gi|291376000|gb|ADD99854.1| excinuclease ABC, B subunit [Propionibacterium acnes SK137] gi|313764686|gb|EFS36050.1| excinuclease ABC subunit B [Propionibacterium acnes HL013PA1] gi|313772455|gb|EFS38421.1| excinuclease ABC subunit B [Propionibacterium acnes HL074PA1] gi|313791735|gb|EFS39846.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA1] gi|313802181|gb|EFS43413.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA2] gi|313807290|gb|EFS45777.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA2] gi|313815753|gb|EFS53467.1| excinuclease ABC subunit B [Propionibacterium acnes HL059PA1] gi|313818336|gb|EFS56050.1| excinuclease ABC subunit B [Propionibacterium acnes HL046PA2] gi|313820098|gb|EFS57812.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA1] gi|313823093|gb|EFS60807.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA2] gi|313825631|gb|EFS63345.1| excinuclease ABC subunit B [Propionibacterium acnes HL063PA1] gi|313830710|gb|EFS68424.1| excinuclease ABC subunit B [Propionibacterium acnes HL007PA1] gi|313838508|gb|EFS76222.1| excinuclease ABC subunit B [Propionibacterium acnes HL086PA1] gi|314915181|gb|EFS79012.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA4] gi|314918365|gb|EFS82196.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA1] gi|314919854|gb|EFS83685.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA3] gi|314925326|gb|EFS89157.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA3] gi|314931869|gb|EFS95700.1| excinuclease ABC subunit B [Propionibacterium acnes HL067PA1] gi|314956027|gb|EFT00425.1| excinuclease ABC subunit B [Propionibacterium acnes HL027PA1] gi|314958421|gb|EFT02524.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA1] gi|314960228|gb|EFT04330.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA2] gi|314963035|gb|EFT07135.1| excinuclease ABC subunit B [Propionibacterium acnes HL082PA1] gi|314968134|gb|EFT12233.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA1] gi|314973136|gb|EFT17232.1| excinuclease ABC subunit B [Propionibacterium acnes HL053PA1] gi|314976305|gb|EFT20400.1| excinuclease ABC subunit B [Propionibacterium acnes HL045PA1] gi|314978214|gb|EFT22308.1| excinuclease ABC subunit B [Propionibacterium acnes HL072PA2] gi|314983486|gb|EFT27578.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA1] gi|314987678|gb|EFT31769.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA2] gi|314990158|gb|EFT34249.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA3] gi|315077497|gb|EFT49555.1| excinuclease ABC subunit B [Propionibacterium acnes HL053PA2] gi|315080283|gb|EFT52259.1| excinuclease ABC subunit B [Propionibacterium acnes HL078PA1] gi|315084545|gb|EFT56521.1| excinuclease ABC subunit B [Propionibacterium acnes HL027PA2] gi|315085882|gb|EFT57858.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA3] gi|315088701|gb|EFT60677.1| excinuclease ABC subunit B [Propionibacterium acnes HL072PA1] gi|315096331|gb|EFT68307.1| excinuclease ABC subunit B [Propionibacterium acnes HL038PA1] gi|315098310|gb|EFT70286.1| excinuclease ABC subunit B [Propionibacterium acnes HL059PA2] gi|315100995|gb|EFT72971.1| excinuclease ABC subunit B [Propionibacterium acnes HL046PA1] gi|327325964|gb|EGE67754.1| excinuclease ABC subunit B [Propionibacterium acnes HL096PA2] gi|327332165|gb|EGE73902.1| excinuclease ABC subunit B [Propionibacterium acnes HL096PA3] gi|327442786|gb|EGE89440.1| excinuclease ABC subunit B [Propionibacterium acnes HL013PA2] gi|327446156|gb|EGE92810.1| excinuclease ABC subunit B [Propionibacterium acnes HL043PA2] gi|327447865|gb|EGE94519.1| excinuclease ABC subunit B [Propionibacterium acnes HL043PA1] gi|327451008|gb|EGE97662.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA3] gi|327452913|gb|EGE99567.1| excinuclease ABC subunit B [Propionibacterium acnes HL092PA1] gi|327453643|gb|EGF00298.1| excinuclease ABC subunit B [Propionibacterium acnes HL083PA2] gi|328753039|gb|EGF66655.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA1] gi|328753696|gb|EGF67312.1| excinuclease ABC subunit B [Propionibacterium acnes HL020PA1] gi|328759215|gb|EGF72831.1| excinuclease ABC subunit B [Propionibacterium acnes HL025PA2] gi|328760537|gb|EGF74105.1| excinuclease ABC subunit B [Propionibacterium acnes HL099PA1] gi|332675214|gb|AEE72030.1| UvrABC system protein B [Propionibacterium acnes 266] Length = 701 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/690 (52%), Positives = 488/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ R Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|307708786|ref|ZP_07645248.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261] gi|307615152|gb|EFN94363.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261] Length = 662 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKDLVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|313890967|ref|ZP_07824589.1| excinuclease ABC, B subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120691|gb|EFR43808.1| excinuclease ABC, B subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 663 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/654 (54%), Positives = 473/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AIA+L+ I EK Q+LLG TG+GKTFTM++VI + +P +V+A Sbjct: 10 FHLVSKYQPSGDQPQAIAELVDNIEGGEKAQILLGATGTGKTFTMSQVINQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + E + ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGEAEHLILF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDEHMEASITKIQAELEQQLKLFESEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q +I EQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMAQTDTVI-EQIIRPTGLLDPVIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + +G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINSRSAKGERCFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S+Q AIDET RRR Q+++N+KH I PQ++K+ I ++I Sbjct: 549 NSEGRVIMYADKMTDSMQKAIDETARRRHIQMDYNEKHGIVPQTIKKDIRDLIAITKEVG 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + S+D S+++ + K +K L+KQM AA+ L+FE AA IRD I LK Sbjct: 609 SEIAEESVDYT--SMNRTERKEAIKKLQKQMQEAAEMLDFELAAEIRDLILELK 660 >gi|293365540|ref|ZP_06612249.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC 35037] gi|307703497|ref|ZP_07640439.1| excinuclease ABC, B subunit [Streptococcus oralis ATCC 35037] gi|291315908|gb|EFE56352.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC 35037] gi|307622904|gb|EFO01899.1| excinuclease ABC, B subunit [Streptococcus oralis ATCC 35037] Length = 662 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|325662412|ref|ZP_08151021.1| UvrABC system protein B [Lachnospiraceae bacterium 4_1_37FAA] gi|325471414|gb|EGC74637.1| UvrABC system protein B [Lachnospiraceae bacterium 4_1_37FAA] Length = 663 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/654 (53%), Positives = 477/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIDQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E+++ L++ QY R Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVIAKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ED A R FG++IE I+E LTG+ + + I+ Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAISEDYAIRAEFFGDEIERITEIDLLTGEIKSELSHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + +++ A K I+EEL+ ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVSKESIDRATKAIEEELEEQVRYFKSEDKLLEAQRIAERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGE P TL +Y P+D ++ +DESH TIPQI GMY GD RK TL +Y Sbjct: 304 GIENYSRHLTGLKPGEAPHTLIDYFPDDFIIMIDESHKTIPQIGGMYAGDRSRKKTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +E E+ + + EQ+IRPTGL+DP VE Sbjct: 364 GFRLPSALDNRPLNFEEFESKVNQMLFVSATPGEYE-ERNELLRAEQVIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVGEVNKEIAKKNKVLITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+R+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T S+Q AI+ET RRR+ Q+E+N+KH I P+++ + + ++I + + Sbjct: 543 NAEGHVIMYADTMTDSMQAAIEETKRRRQVQMEYNEKHGITPKTIHKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++ S+S+K+ +A +K + K+M AA LNFE AA +RD++ K Sbjct: 601 VSSEEMKLEKDPESMSEKELQAAIKDINKKMKKAAAELNFEVAAELRDQLIEFK 654 >gi|294793535|ref|ZP_06758672.1| excinuclease ABC subunit B [Veillonella sp. 3_1_44] gi|294455105|gb|EFG23477.1| excinuclease ABC subunit B [Veillonella sp. 3_1_44] Length = 725 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/687 (53%), Positives = 482/687 (70%), Gaps = 40/687 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L +GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+I+IFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + +N A++ I+ EL +L +L+ RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVT+PQI MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E + I EQIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q AIDET RRR Q +N +HNI P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTNISIDAQQLSLSKKKGK----------AH-----------------------LKSL 767 T + LS KKGK H ++ L Sbjct: 613 DMVT------EGKGLSPKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEEL 666 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794 +QM AA L FE AA++RD++ L+ Sbjct: 667 DRQMKAAAKQLEFESAAKLRDQLGVLR 693 >gi|332362131|gb|EGJ39933.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK49] Length = 662 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEKEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|302341828|ref|YP_003806357.1| excinuclease ABC, B subunit [Desulfarculus baarsii DSM 2075] gi|301638441|gb|ADK83763.1| excinuclease ABC, B subunit [Desulfarculus baarsii DSM 2075] Length = 679 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/658 (54%), Positives = 467/658 (70%), Gaps = 11/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++DY P GDQP AIAQL G+ K Q+LLGVTGSGKTFTMA VI A +V+A Sbjct: 21 FKLESDYQPQGDQPQAIAQLTAGLAQGCKRQVLLGVTGSGKTFTMANVIAASGLTTLVLA 80 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID+MRH Sbjct: 81 PNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINERIDKMRH 140 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D I+V+SVSCIYG+GS E+Y+ M++ L+ GD V ++ +L LV+ Y+R Sbjct: 141 AATFALLTRQDVIIVASVSCIYGLGSPEAYAGMLLYLQRGDQVGREAVLRKLVEMLYERN 200 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG FR GD +EIFP++ E+ A R+ FG+++E IS PL G + + + I+ Sbjct: 201 EFSFHRGVFRARGDVVEIFPAYEEERAVRIEFFGDEVERISFIDPLRGVALEQTDKVVIF 260 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT A+ I+ EL R+ + R +E+QR+ +R +D+EM++ G C Sbjct: 261 PASHYVTTEGVREAAIAAIRAELAERIKYYDDNARFIESQRIRERTLFDIEMMKELGWCH 320 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG+PPPTL +Y P+ LL +DESH+T PQ+ GMY GD RKATL ++ Sbjct: 321 GIENYSRHLTGRQPGQPPPTLLDYFPKKWLLIIDESHITAPQVRGMYNGDRSRKATLVDF 380 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I VSATP +ELEQ QG++VEQ+IRPTGL+DP VE Sbjct: 381 GFRLPSALDNRPLNFDEFNALLDNVIYVSATPADYELEQAQGVVVEQLIRPTGLIDPIVE 440 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+DV E+ L A +G R L+T LTKRMAE+LTEYL E + V+Y+HS++ T+ Sbjct: 441 VRPASGQVDDVMAELRLVAGRGERALVTTLTKRMAEELTEYLTEVGLSVKYLHSDIDTIA 500 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E+++ LR G FD+LVGINLLREGLD+PE LVAILDAD+EGFLRS SLIQT GRAAR Sbjct: 501 RVELLQGLRRGDFDILVGINLLREGLDLPEVSLVAILDADREGFLRSTRSLIQTAGRAAR 560 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI YAD IT SI A++ET+RRR Q ++N++H I P+S+K+ I ++ P + D Sbjct: 561 NVGGKVIFYADQITDSIARAMEETSRRRVAQEQYNQEHGITPESIKKAIGAMLPPEIAAD 620 Query: 741 AAT----TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T D +L A + LR++M AA L FEEAA +RD+IK L+ Sbjct: 621 YPAPPPLTAAVADPGELP-------AIIADLRRRMKEAAKGLRFEEAAELRDQIKALE 671 >gi|298674374|ref|YP_003726124.1| excinuclease ABC subunit B [Methanohalobium evestigatum Z-7303] gi|298287362|gb|ADI73328.1| excinuclease ABC, B subunit [Methanohalobium evestigatum Z-7303] Length = 664 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/662 (55%), Positives = 478/662 (72%), Gaps = 14/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T Y P GDQP+AI+ L G++ K Q LLGVTGSGKTFTMA VIE +Q+P +V+A Sbjct: 4 FKVVTSYEPRGDQPSAISNLTNGLNKGFKHQTLLGVTGSGKTFTMANVIENVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEKESSINE+I+R+R Sbjct: 64 HNKTLAAQLYSEFREFFPDNAVEYFVSYYDYYQPEAYIPTTDTYIEKESSINEEINRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D IVVSSVSCIY IGS + + +M + L G+ V++ L +SLV QY+R Sbjct: 124 SATKSLMERRDVIVVSSVSCIYNIGSPDEWKEMSLFLSPGEEVDKSSLSASLVNMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV----ET 376 DI +GTFR GD+IEI+P+ E+ R+ +FG++IE+IS F PLTG K++N E Sbjct: 184 DIEFTQGTFRSRGDTIEIYPAQ-EEHGIRIELFGDEIEKISYFDPLTG-KVQNTLNEDEY 241 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 I IY H+V P+ ++ AM I++EL+ + E + LEAQRL QR +D+EML Sbjct: 242 IAIYPAKHFVMPQEQIDRAMDSIEKELEEHVSRFEANNQQLEAQRLLQRTNFDMEMLREI 301 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSR+ GR PG+PP +L ++ P+D L+F+DESHVTIPQI GMY GD RK + Sbjct: 302 GYCSGIENYSRHFDGRRPGDPPYSLLDFFPDDYLIFIDESHVTIPQIGGMYNGDKSRKDS 361 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L EYGFRLPS DNRPL+F+E+ I VSATP ++E + + +VEQIIRPTGLVD Sbjct: 362 LVEYGFRLPSAYDNRPLKFDEFENRVNQIIYVSATPANYEFNKSEQ-VVEQIIRPTGLVD 420 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P + +R Q++D+ E+ A++G R L+T LTKRMAEDLT+YL E IRV+YMHS++ Sbjct: 421 PEIIVRPIENQIDDLIGEVREVAEEGYRTLVTTLTKRMAEDLTDYLLEVGIRVKYMHSDI 480 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 TLER EI+R LR G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIG Sbjct: 481 DTLERAEIVRSLRKGDFDVLVGINLLREGLDIPEVELVAILDADKEGFLRSERSLIQTIG 540 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RA+RN N +VILYAD T S++ AIDET RRRE Q++ N+++ I PQ++ + I + + + Sbjct: 541 RASRNANGRVILYADKTTGSMKRAIDETNRRRELQIDFNQRNGIVPQTITKAIQKELVEV 600 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKS----LRKQMHLAADNLNFEEAARIRDEIKR 792 + T+ S + ++L++ K +++ L + MHLAA NL FE+AA +RD+I Sbjct: 601 EYPEPQTSEYS---ETVALAENKSTKDIENLIIDLEEDMHLAAKNLEFEKAAELRDKIND 657 Query: 793 LK 794 L+ Sbjct: 658 LR 659 >gi|319650564|ref|ZP_08004704.1| UvrABC system protein B [Bacillus sp. 2_A_57_CT2] gi|317397745|gb|EFV78443.1| UvrABC system protein B [Bacillus sp. 2_A_57_CT2] Length = 659 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/657 (55%), Positives = 475/657 (72%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI ++++GI+S +K Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 5 FELVSKYSPQGDQPGAIKKIVEGINSGKKHQTLLGATGTGKTFTVSNVIQEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E YS+M++ L+ G +E+ +LL LV QY+R Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYSEMVLSLRTGMEIERNQLLHRLVDIQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIMGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL + +LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRIAVQNIEKELEERLAELRENDKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y PED L+ +DESHVT+PQI GM+ GD RK+ L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKSVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F E+ + VSATPG +ELE +I EQIIRPTGL+DP ++ Sbjct: 365 GFRLPSAMDNRPLTFTEFEKHVKQAVFVSATPGPYELEHTPEMI-EQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI Q+ R+L+T LTK+M+EDLT+YL E I+V+Y+HSEVKTLE Sbjct: 424 VRPIEGQIDDLIGEIQDRIQKNERVLVTTLTKKMSEDLTDYLKEIGIKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRELRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD IT S++ AI ET RRR Q E+NKKH I P ++++ I D I Sbjct: 544 NANGHVIMYADRITDSMEKAISETKRRRSIQEEYNKKHGITPMTIQKDIR---DSIRATH 600 Query: 741 AATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA A+ L+KK+ + + + K+M AA +LNFE AA +RD I LK+ Sbjct: 601 AAEEQEEYQPSAKLGKLNKKEREKLIGDMEKEMKEAAKSLNFERAAELRDLILELKA 657 >gi|303254266|ref|ZP_07340375.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455] gi|302598760|gb|EFL65797.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455] Length = 662 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 NH D F++ + Y PSGDQ AI QL+ I EK Q+L+G TG+GKT+TM++VI + Sbjct: 3 NHITD-NQFKLVSKYQPSGDQLQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N Sbjct: 62 NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ L Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EM Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L YGFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPT Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP VE+R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E +I+V+YM Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMSIKVKYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LI Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++ Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 I + A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657 Query: 793 LKS 795 +K+ Sbjct: 658 VKA 660 >gi|300853513|ref|YP_003778497.1| excinuclease ABC subunit B [Clostridium ljungdahlii DSM 13528] gi|300433628|gb|ADK13395.1| excinuclease ABC, subunit B [Clostridium ljungdahlii DSM 13528] Length = 660 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 477/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI + G+ K Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKIHSKFKPTGDQPKAIDSIADGVLKGNKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF++FFP N+VEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFRDFFPDNSVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+G+ E Y ++ + L+ G + E+L LV+ QY+R Sbjct: 124 SATSALLERKDVIVVASVSCIYGLGNPEEYKKLTLSLRPGMIKNRDEVLKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD ++IFP+ D A RV FG++I++I EF LTG I + I+ Sbjct: 184 DINFVRGTFRVKGDIVDIFPAASTDHAIRVEFFGDEIDKIREFDVLTGDTIGFRKHANIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T R + A++ I+EEL+ RL EL + +LLEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSREKMELAIEKIEEELEHRLKELTSQDKLLEAQRLKQRTNFDIEMMREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + GR G PP TL +Y P+D LLF+DESHVT+PQ+ MY GD RK +L EY Sbjct: 304 GIENYSRIMDGRAKGSPPQTLIDYFPDDFLLFIDESHVTLPQVKAMYAGDRSRKDSLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+E+ + VSATP +ELE + + EQI+RPTGL+DP + Sbjct: 364 GFRLPSAYDNRPLKFQEFEKKINQVVFVSATPADYELEHSEN-VAEQILRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y+ I +G RIL+T LTK+MAEDLT+Y + N++ RY+HS + T++ Sbjct: 423 VKPIKGQIDDLYNSIQKTISRGYRILVTTLTKKMAEDLTDYFKDMNVKARYLHSSIATID 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N SKVI+YAD ITKS+ AI ET RRR+ Q+E+NKK+ I P+++ + I EVI+ ++LE Sbjct: 543 NSESKVIMYADVITKSMDKAISETKRRRKIQIEYNKKNGIVPKTINKAIREVIESTMVLE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N S++ + + +K +++ +QM AA L FEEAA++RD I +LK Sbjct: 603 EKEEYN-SLE-EAVKADNEKIDELIEAHERQMKTAAKELRFEEAAKLRDAILKLK 655 >gi|282854217|ref|ZP_06263554.1| excinuclease ABC, B subunit [Propionibacterium acnes J139] gi|282583670|gb|EFB89050.1| excinuclease ABC, B subunit [Propionibacterium acnes J139] gi|314923202|gb|EFS87033.1| excinuclease ABC subunit B [Propionibacterium acnes HL001PA1] gi|314966970|gb|EFT11069.1| excinuclease ABC subunit B [Propionibacterium acnes HL082PA2] gi|315103242|gb|EFT75218.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA2] gi|327327791|gb|EGE69567.1| excinuclease ABC subunit B [Propionibacterium acnes HL103PA1] Length = 701 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|270292807|ref|ZP_06199018.1| excinuclease ABC, B subunit [Streptococcus sp. M143] gi|270278786|gb|EFA24632.1| excinuclease ABC, B subunit [Streptococcus sp. M143] Length = 662 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K + K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKHERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|312875888|ref|ZP_07735878.1| excinuclease ABC, B subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797369|gb|EFR13708.1| excinuclease ABC, B subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 661 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/663 (56%), Positives = 490/663 (73%), Gaps = 17/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMIKDRDEVIRELIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A R+ FG++IE+I+EF +TG+ I + I+ Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIEKITEFDVVTGEVIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR+PG PP TL +Y P+D ++F+DESHVTIPQ+ MY GD RK TL EY Sbjct: 304 GIENYSRHLTGRSPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL++ IVEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LTEYL + IRVRYMHS++ T+E Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+ Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHRIIPQTVRKGIRQIIE------ 596 Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 AT +++ + ++ +++K++ + ++K L ++M A L FE+AA++RD+I Sbjct: 597 -ATVSVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIF 655 Query: 792 RLK 794 LK Sbjct: 656 ELK 658 >gi|288919861|ref|ZP_06414185.1| excinuclease ABC, B subunit [Frankia sp. EUN1f] gi|288348776|gb|EFC83029.1| excinuclease ABC, B subunit [Frankia sp. EUN1f] Length = 716 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/689 (52%), Positives = 486/689 (70%), Gaps = 30/689 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P+GDQPAAI +L + I + EK +LLG TG+GK+ T A ++E +QRPA+VMA Sbjct: 27 FQVVSEFAPAGDQPAAIDELARRIQAGEKDVVLLGATGTGKSATTAWLVERLQRPALVMA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH Sbjct: 87 PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV+SVSCIYG+G+ + Y +V+L++GD + LL V QY R Sbjct: 147 SATMNLLTRRDVIVVASVSCIYGLGTPQEYIDRMVRLRVGDEFGHERLLRRFVDVQYARN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++E+FP + E++A R+ MFG++IE +S +PLTG+ +R E I ++ Sbjct: 207 DVAFTRGTFRVRGDTVEVFPVY-EELAVRIEMFGDEIERLSYLHPLTGEIVREAEEIFVF 265 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL RL ELE++ +LLEAQRL R +YD+EM+ G C Sbjct: 266 PATHYVAGPERMERAITGIEAELTGRLTELERQSKLLEAQRLRMRTSYDIEMMRQVGFCS 325 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G PP TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 326 GIENYSRHIDGRAAGTPPHTLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDH 385 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR+EE+ T+ +SATPG +EL + G +VEQIIRPTGL+DP + Sbjct: 386 GFRLPSAVDNRPLRWEEFLERIGQTVYLSATPGPYELGRGDG-VVEQIIRPTGLLDPEII 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L A++ RIL+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 445 LKPTKGQIDDLVHEIRLRAERDERILVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++ DLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 505 RVELLTDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AI+ET RRREKQ+ +N + ++PQ +++K+++++D ++ E Sbjct: 565 NVSGQVHMYADKITPSMSHAIEETNRRREKQIAYNTERGLDPQPLRKKVVDILDDMVRET 624 Query: 741 A-------------------------ATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLA 774 A A + A +L+ ++ A L + L QMH A Sbjct: 625 AGGEMIGGGGRAQSRGKAPAPGMKSKAGDTVGRYAAELAGMPREELAQLIRQLDDQMHEA 684 Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 A L FE AAR+RDEI LK +G+D Sbjct: 685 AKELQFELAARLRDEISELKKE--LRGMD 711 >gi|323489396|ref|ZP_08094625.1| excinuclease ABC subunit B [Planococcus donghaensis MPA1U2] gi|323396890|gb|EGA89707.1| excinuclease ABC subunit B [Planococcus donghaensis MPA1U2] Length = 660 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/655 (55%), Positives = 471/655 (71%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q Y P+GDQP AIA+L +GI ++ Q LLG TG+GKT+TM+ VI+ +++P +VMA Sbjct: 5 FNLQAPYEPAGDQPQAIAELTQGIIDGKRCQTLLGATGTGKTYTMSNVIQQVKKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP++DT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQSDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D IV++SVSCIYG+GS + Y +++V L+ G +E+ +LL LV QY+R Sbjct: 125 SATSSLFERDDVIVIASVSCIYGLGSPKEYRELVVSLRKGMEIERNQLLRKLVDVQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ I + + I+ Sbjct: 185 DINFIRGTFRVRGDVVEIFPASRDERCLRVEFFGDEIDRIREVDALTGEIIGERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I+ EL+ RL E+ E +LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREDKMVKAIENIEVELEERLKEMRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED LL VDESHVT+PQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGAQPYTLIDYFPEDFLLVVDESHVTLPQVRGMFNGDQARKKVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F E+ + VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSAMDNRPLTFTEFEEHISQAVFVSATPGPYELEHTPE-MVEQIIRPTGLLDPTIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ DEI +++ R+L+T LTK+M+EDLT YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLMDEIRQRSEKNERVLVTTLTKKMSEDLTAYLKDAGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LR+G +DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEIIRELRMGVYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S+Q A+DETTRRR Q E+N+KH + P ++++KI +VI + Sbjct: 544 NANGRVIMYADRITDSMQKAMDETTRRRTIQAEYNEKHGVTPITIQKKIRDVIRATNAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + IS L K++ + L +M AA L+FE AA +RD + LK+ Sbjct: 604 ESEEYISKAVTGKKLKKEERVKLISLLETEMKEAAKALDFERAAELRDTVLELKA 658 >gi|195978380|ref|YP_002123624.1| excinuclease ABC subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689826|sp|B4U3P4|UVRB_STREM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|195975085|gb|ACG62611.1| UvrB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 663 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/660 (53%), Positives = 477/660 (72%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 +D F++ + Y PSGDQP AI L+ I S EK Q+LLG TG+GKT+TM++VI + +P Sbjct: 5 RDFKAFKLVSKYAPSGDQPQAIEALVDNIESGEKAQILLGATGTGKTYTMSQVISKVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + + + Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDKARKQ 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ IVEQIIRPTGL+ Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTK+MAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN + VI+YAD +T S+Q AIDET RRR Q+ +N++H I PQ++K+ I ++I Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A T + + ++ S++ + +K L+K M AA+ L+FE AA++RD I LK+ Sbjct: 604 SRAVEAKATEAETNYESMTRSER--QEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661 >gi|269926387|ref|YP_003323010.1| excinuclease ABC, B subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790047|gb|ACZ42188.1| excinuclease ABC, B subunit [Thermobaculum terrenum ATCC BAA-798] Length = 658 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/654 (54%), Positives = 478/654 (73%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D P GDQP AI L++G+ + + Q LLG TG+GKTFT+A VIE +QRP +V+A Sbjct: 4 FKIISDLRPVGDQPKAIEALVEGVRAGMRHQTLLGATGTGKTFTVANVIERLQRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++ID++RH Sbjct: 64 HNKTLAAQLYAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDTEINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LLER D I+V+SVSCIYG+GS E YS+ ++ LK GD+V +++ LV+ QY+R Sbjct: 124 AATMALLERRDVIIVASVSCIYGLGSPEEYSKFVISLKRGDTVRLSKVIRRLVEAQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD++EI P++ ++VA R+ FG++I+ I+E PLTG+ + IY Sbjct: 184 DQSLSRGTFRVRGDTLEIQPAY-DEVALRIEFFGDEIDRITEIDPLTGEVLIERTKADIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + L A+K I+EEL+ R ++G+++EA+RL+QR YDLEML G C Sbjct: 243 PRKHFVTSQERLQEAIKAIREELEERYNWFIEQGKIVEAERLKQRTLYDLEMLSEAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L+GR PGEPP TL +Y P+D LL VDESH+T+PQI GMY GD RK L +Y Sbjct: 303 GVENYSRHLSGRKPGEPPITLLDYFPDDFLLIVDESHITLPQIRGMYAGDRSRKEVLVQY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG WE E + IV QIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLTFDEFQSHIVNAIYVSATPGPWEEEHSEQ-IVHQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +E++ +G R+++T L KRMAE+L++YL E I+ RY+H E+ TLE Sbjct: 422 VRPTEGQIDDLLEEVHERVSKGQRVIITTLNKRMAEELSDYLSEMGIKNRYIHHEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQ IGRAAR Sbjct: 482 RVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQMIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V KVI+YADTIT+S+Q AIDET RRR Q+E+N KHNI P S+ +++ ++ + + Sbjct: 542 HVEGKVIMYADTITESMQKAIDETNRRRAIQMEYNLKHNIVPASIVKEVRDITERVKAIA 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D ++LSK + +K L QM AA L FE+AA +RD+I L+ Sbjct: 602 ESKEQYRADG-AVNLSKDEIFRMIKDLESQMKQAAKALEFEKAAILRDQIAELR 654 >gi|227495385|ref|ZP_03925701.1| excision endonuclease subunit B [Actinomyces coleocanis DSM 15436] gi|226830932|gb|EEH63315.1| excision endonuclease subunit B [Actinomyces coleocanis DSM 15436] Length = 700 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/676 (54%), Positives = 482/676 (71%), Gaps = 23/676 (3%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ ++Y PSGDQP AI +L + I++ E+ LLG TG+GK+ T A +IE +QRP ++ Sbjct: 19 TPFEVISEYTPSGDQPKAIRELTERINAGERDITLLGATGTGKSATAAWLIEQVQRPTLI 78 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 MAPNK LAAQL SE +N P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+ Sbjct: 79 MAPNKTLAAQLASELRNLLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERL 138 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSAT SLL R D +VVSSVSCIYG+G+ E Y +V+L+ G VE+ ELL LV QY Sbjct: 139 RHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVNRMVELENGMRVERDELLRQLVSMQYT 198 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ RGTFRV GD+IEI P + E++A R+ MFG++I+ ++ +PLTG+ IR V+ Sbjct: 199 RNDMDFRRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGELIREVDHTF 257 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ SHYV + + A+ I+ EL R + +LLEAQRL R TYDLEML GS Sbjct: 258 LFPASHYVAGKERMQRAISSIQAELDERTEWFTQRNKLLEAQRLRMRTTYDLEMLREIGS 317 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR++ GR G PP TL +Y P+D LL +DESHVT+PQI GM+ GD RK TL Sbjct: 318 CAGIENYSRHIDGRAAGTPPHTLLDYFPDDFLLIIDESHVTVPQIRGMFEGDMARKRTLV 377 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS MDNRPLRF E+ T+ +SATPG++ELE G +VEQIIRPTGLVDP Sbjct: 378 DHGFRLPSAMDNRPLRFAEFQERVGQTVYLSATPGAYELEHSHG-VVEQIIRPTGLVDPK 436 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + ++ + Q++D+ EI + R+L+T LTKRMAE+LT Y ER +RV Y+HS+V T Sbjct: 437 IVVKPTQQQIDDLLGEIQERVSRNERVLVTTLTKRMAEELTTYFSERGVRVEYLHSDVDT 496 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L R+E++R+LRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRA Sbjct: 497 LRRVELLRELRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRA 556 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ +V +YAD IT S+++AI ET RRRE QL +N ++ I+P+ +++KI +V D + Sbjct: 557 ARNVSGEVHMYADKITDSMRVAIAETERRREIQLAYNHENGIDPRPLRKKIQDVTDMLAR 616 Query: 739 EDA------------------ATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNL 778 ED A+T S +++ SK +G+ ++ L QMHLAA++L Sbjct: 617 EDVDTQTLLQGGYRKPQNGKNASTTASSKPERVG-SKAEGELLELIEQLTAQMHLAAEDL 675 Query: 779 NFEEAARIRDEIKRLK 794 FE AA RDE+K LK Sbjct: 676 QFELAAHYRDELKELK 691 >gi|306825137|ref|ZP_07458479.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432573|gb|EFM35547.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 662 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIERLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+ E+ D I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EIRDLIAVTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 606 AVTKEEDKEIDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|322391788|ref|ZP_08065253.1| excision endonuclease subunit UvrB [Streptococcus peroris ATCC 700780] gi|321145268|gb|EFX40664.1| excision endonuclease subunit UvrB [Streptococcus peroris ATCC 700780] Length = 662 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND I+V+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIIVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YDLEML G Sbjct: 250 PATHFVTNDDHMEVAIAKIEAELEEQLALFEKEGKLLEAQRLKQRTEYDLEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEHEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-SVTKAL 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|322385680|ref|ZP_08059324.1| excision endonuclease subunit UvrB [Streptococcus cristatus ATCC 51100] gi|321270418|gb|EFX53334.1| excision endonuclease subunit UvrB [Streptococcus cristatus ATCC 51100] Length = 662 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEKEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|50842290|ref|YP_055517.1| excinuclease ABC subunit B [Propionibacterium acnes KPA171202] gi|289426306|ref|ZP_06428052.1| excinuclease ABC, B subunit [Propionibacterium acnes SK187] gi|81692477|sp|Q6A9K7|UVRB_PROAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|50839892|gb|AAT82559.1| excinuclease ABC subunit B [Propionibacterium acnes KPA171202] gi|289153471|gb|EFD02186.1| excinuclease ABC, B subunit [Propionibacterium acnes SK187] gi|313813162|gb|EFS50876.1| excinuclease ABC subunit B [Propionibacterium acnes HL025PA1] gi|315106997|gb|EFT78973.1| excinuclease ABC subunit B [Propionibacterium acnes HL030PA1] Length = 701 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ R Q++D+ EI +G +L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDGVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGQRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|315093111|gb|EFT65087.1| excinuclease ABC subunit B [Propionibacterium acnes HL060PA1] Length = 701 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIRTRMDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|258653200|ref|YP_003202356.1| excinuclease ABC subunit B [Nakamurella multipartita DSM 44233] gi|258556425|gb|ACV79367.1| excinuclease ABC, B subunit [Nakamurella multipartita DSM 44233] Length = 739 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/687 (52%), Positives = 478/687 (69%), Gaps = 34/687 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AIA+L K + + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSDYQPSGDQPQAIAELRKRLDAGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + FP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN ++R+RH Sbjct: 88 PNKTLAAQLANELRELFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINNDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+G+ +SY + + IG +E+ LL +LV+ QY R Sbjct: 148 SATMSLLSRRDVIVVASVSCIYGLGTPQSYLDRSLPVAIGQQIERDALLRALVEIQYSRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI P++ E++A R+ FG+++E + +PLTG +R V++++I+ Sbjct: 208 DVSFTRGSFRVRGDTVEIIPAY-EELAVRIEFFGDEVERLYYLHPLTGDVVREVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL RL ELEK+G+LLEAQRL R +YD+EM+ G C Sbjct: 267 PATHYVAGPERMAKAIAAIETELAQRLAELEKQGKLLEAQRLRMRTSYDVEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y P+D LL +DESHVT+PQI MY GD RK L ++ Sbjct: 327 GIENYSRHIDGRPGGSAPATLIDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRVLVDH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE+ T+ +SATPG +EL Q QG VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAMDNRPLTWEEFAGRIGQTVYLSATPGPYELGQAQGEFVEQVIRPTGLVDPEVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ R Q++D+ EI + R+L+T LTK+M+EDLT+YL E IRVRY+HSEV TL Sbjct: 447 IKPTRGQIDDLIGEIRARTIRDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 507 RVELLRELRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V +YAD IT S++ AIDET RRREKQ E+N+ H I+P +++KI +++ + E Sbjct: 567 NVNGEVHMYADKITPSMERAIDETNRRREKQQEYNRAHGIDPMPLRKKINDILALVYAEA 626 Query: 741 AATTN----ISIDAQQLSLSKKK-------GKAH----------------------LKSL 767 T + + + + S+ + GKA ++ L Sbjct: 627 DNTVDGGSPVKVGGSGRNSSRGRKAQGEPGGKASKTSGVFAGHNTAGMARSELADLVQQL 686 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794 QM AA +L FE A R+RDEI LK Sbjct: 687 TDQMMAAARDLKFELAGRLRDEISELK 713 >gi|213023392|ref|ZP_03337839.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 648 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/593 (60%), Positives = 446/593 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 NVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 >gi|296330276|ref|ZP_06872757.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676119|ref|YP_003867791.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii str. W23] gi|296152544|gb|EFG93412.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414363|gb|ADM39482.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii str. W23] Length = 661 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/656 (54%), Positives = 476/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI +K Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+ +E+ ELL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPDMEIERNELLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + E I I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDREHIAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L + + G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +E+E +I EQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPLID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQARVERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N +VI+YAD +TKS+++AI+ET RRRE+Q N++H I PQ++ ++I +VI + E Sbjct: 544 NAEGRVIMYADKMTKSMEIAINETKRRREQQERFNEEHGITPQTINKEIRDVIRATVAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D A + ++KK+ + ++ + +M AA L+FE AA +RD + LK+ Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 >gi|138896673|ref|YP_001127126.1| excinuclease ABC subunit B [Geobacillus thermodenitrificans NG80-2] gi|134268186|gb|ABO68381.1| Excinuclease ABC subunit B [Geobacillus thermodenitrificans NG80-2] Length = 659 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/657 (55%), Positives = 474/657 (72%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQP AI +L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVSSYQPQGDQPQAIEKLVDGLKRGVKHQTLLGATGTGKTFTISNVIAKVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNTLLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ RL EL ++G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKLAIANIEKELEERLAELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFDEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R L+T LTK+MAEDLT+YL E +V Y+HSE+KTLE Sbjct: 424 VRPIAGQIDDLISEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGFKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+NKKH I P+++++ I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRTIQEEYNKKHGIVPRTIQKDIRDVIRATY--- 600 Query: 741 AATTNISIDAQ--QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + +A+ +++K++ + ++ L +M AA L+FE AA++RD I LK+ Sbjct: 601 AAEETETYEAKPTAANMTKQEREELIRQLEAEMKEAAKALDFERAAQLRDVIFELKA 657 >gi|331086213|ref|ZP_08335295.1| UvrABC system protein B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406372|gb|EGG85886.1| UvrABC system protein B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 663 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/654 (53%), Positives = 477/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIEQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E+++ L++ QY R Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVIAKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ED A R FG++IE I+E LTG+ + I I+ Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAISEDYAIRAEFFGDEIERITEIDLLTGEIKSELSHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + +++ A K I+EEL+ ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVSKESIDRATKAIEEELEEQVRYFKSEDKLLEAQRIAERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGE P TL +Y P+D ++ +DESH TIPQI GMY GD RK TL +Y Sbjct: 304 GIENYSRHLTGLKPGEAPHTLIDYFPDDFIIMIDESHKTIPQIGGMYAGDRSRKKTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +E E+ + + EQ+IRPTGL+DP VE Sbjct: 364 GFRLPSALDNRPLNFEEFESKVNQMLFVSATPGEYE-ERNELLRAEQVIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVGEVNKEIAKKNKVLITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+R+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T S++ AI+ET RRR+ Q+E+N+KH I P+++ + + ++I + + Sbjct: 543 NAEGHVIMYADTMTDSMKAAIEETKRRRQVQMEYNEKHGITPKTIHKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++ S+S+K+ +A +K + K+M AA LNFE AA +RD++ K Sbjct: 601 VSSEEMKLEKDPESMSEKELQAAIKDINKKMKKAAAELNFEVAAELRDQLIEFK 654 >gi|51595531|ref|YP_069722.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 32953] gi|153950655|ref|YP_001401802.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 31758] gi|170025148|ref|YP_001721653.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis YPIII] gi|186894586|ref|YP_001871698.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis PB1/+] gi|81825889|sp|Q66D62|UVRB_YERPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189038011|sp|A7FKM4|UVRB_YERP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238688574|sp|B1JSR9|UVRB_YERPY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238691437|sp|B2K8T5|UVRB_YERPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|51588813|emb|CAH20427.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 32953] gi|152962150|gb|ABS49611.1| UvrABC system, B protein [Yersinia pseudotuberculosis IP 31758] gi|169751682|gb|ACA69200.1| excinuclease ABC, B subunit [Yersinia pseudotuberculosis YPIII] gi|186697612|gb|ACC88241.1| excinuclease ABC, B subunit [Yersinia pseudotuberculosis PB1/+] Length = 671 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G I+EQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLT+YL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ P + Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSM 604 Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ Q SLS K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664 >gi|222529427|ref|YP_002573309.1| excinuclease ABC subunit B [Caldicellulosiruptor bescii DSM 6725] gi|312622339|ref|YP_004023952.1| excinuclease ABC subunit B [Caldicellulosiruptor kronotskyensis 2002] gi|254764899|sp|B9MS82|UVRB_ANATD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|222456274|gb|ACM60536.1| excinuclease ABC, B subunit [Caldicellulosiruptor bescii DSM 6725] gi|312202806|gb|ADQ46133.1| excinuclease ABC, B subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 661 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/663 (56%), Positives = 488/663 (73%), Gaps = 17/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L+ G + ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRDLIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A R+ FG++IE I+EF +TG+ I + I+ Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG PP TL +Y P D ++F+DESHVTIPQ+ MY GD RK TL EY Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPNDFIMFIDESHVTIPQVRAMYNGDKARKDTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL++ IVEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LTEYL + IRVRYMHS++ T+E Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+ Sbjct: 543 NVDGKVIMYADRITNAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIE------ 596 Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 AT +++ + ++ +++K++ + ++K L ++M A L FE+AA++RD+I Sbjct: 597 -ATVSVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKLAIELEFEKAAKVRDKIF 655 Query: 792 RLK 794 LK Sbjct: 656 ELK 658 >gi|238788761|ref|ZP_04632552.1| UvrABC system protein B [Yersinia frederiksenii ATCC 33641] gi|238723066|gb|EEQ14715.1| UvrABC system protein B [Yersinia frederiksenii ATCC 33641] Length = 706 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 41 FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 100 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR Sbjct: 101 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMRL 160 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 161 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 220 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 221 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 281 PKTHYVTPRERILQAMEEIKVELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 341 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G +V+Q++RPTGL+DP +E Sbjct: 401 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGEVVDQVVRPTGLLDPLIE 460 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 461 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 520 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 521 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 580 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ P + Sbjct: 581 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSM 640 Query: 738 LEDAATTNISI-DAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D SL K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 641 RGKGKGRGGKVADTNNYQSLPPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 699 >gi|322387685|ref|ZP_08061294.1| excision endonuclease subunit UvrB [Streptococcus infantis ATCC 700779] gi|321141552|gb|EFX37048.1| excision endonuclease subunit UvrB [Streptococcus infantis ATCC 700779] Length = 662 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/658 (54%), Positives = 476/658 (72%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND I+V+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIIVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIEAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEHEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLISVTKAVA 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ +I+ SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 609 KEEDKEVDIN------SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|325687627|gb|EGD29648.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK72] Length = 662 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|167760010|ref|ZP_02432137.1| hypothetical protein CLOSCI_02382 [Clostridium scindens ATCC 35704] gi|167662303|gb|EDS06433.1| hypothetical protein CLOSCI_02382 [Clostridium scindens ATCC 35704] Length = 662 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/648 (53%), Positives = 472/648 (72%), Gaps = 3/648 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA +I + +P +++A Sbjct: 7 FKLESPYKPTGDQPQAIEQLVKGFREGNQCQTLLGVTGSGKTFTMANIIAQLNKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH Sbjct: 67 HNKTLAAQLYGEFKEFFPSNSVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y M++ L+ G ++ E++ L++ QY+R Sbjct: 127 SATAALSERRDVIIVASVSCIYGLGSPIDYQNMVISLRPGMEKDRDEVIHKLIEIQYERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI P+ E +A+R+ FG++++ I+E LTG+ + + I+ Sbjct: 187 EMDFKRGTFRVRGDVLEIIPALTEGMAYRIEFFGDEVDRITEVDVLTGEIKNELNHVAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + ++ A++ I+EEL+ ++ + EG+LLEAQR+ +R +D+EM+ TG C Sbjct: 247 PASHYVVSKESMERAIRGIEEELEDQIHYFKSEGKLLEAQRISERTNFDIEMMRETGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD RK+TL EY Sbjct: 307 GIENYSRHLTGLEPGQPPHTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKSTLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E EQ + + EQ+IRPTGL+DP VE Sbjct: 367 GFRLPSAKDNRPLSFEEFESKIDQVMFVSATPGPYE-EQHELLRAEQVIRPTGLLDPEVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + +IL+T LTKRMAEDLT+Y+ E IRVRY+HS++ TLE Sbjct: 426 VRPVEGQIDDLVGEVNKEIAKKNKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 486 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S++LA+DET RRR+ Q+E+N+ H I PQ++++ + ++I + + Sbjct: 546 NAEGHVIMYADTITDSMRLALDETERRRKVQMEYNEAHGITPQTIQKSVRDLI--AVSKK 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + ++ S+S+K+ + K L KQM AA LNFE AA +RD Sbjct: 604 VAAEELRLEKDPESMSEKELEKLTKELTKQMKKAAAELNFEAAAELRD 651 >gi|123443116|ref|YP_001007090.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189038010|sp|A1JSC3|UVRB_YERE8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|122090077|emb|CAL12940.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 670 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELAERRKVLLANNKLIEEQRITQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPSDGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DP 735 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPST 604 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ SL+ K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 605 RGKGKGRGGKVADTNNYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 663 >gi|324990987|gb|EGC22921.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK353] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTDYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI A++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSDGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKEMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|315444476|ref|YP_004077355.1| excinuclease ABC subunit B [Mycobacterium sp. Spyr1] gi|315262779|gb|ADT99520.1| Excinuclease ABC subunit B [Mycobacterium sp. Spyr1] Length = 719 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/690 (52%), Positives = 482/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSEYEPAGDQPAAIKELERRIRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+GD V + LL LV QY R Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDSLLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG++IEE+ +PLTG IR V++++I+ Sbjct: 208 DMSFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTGDIIRKVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGTERMAAAISTIEAELEARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG++EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNFELAQTGGEFVEQVIRPTGLVDPQVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVL+GINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N + I+PQ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMKQAIDETERRRAKQIAYNTERGIDPQPLRKKIADILDQVYREA 626 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + I + S+ + G+A +K L QM Sbjct: 627 DDTEAVEIGGSGRNASRGRRAPGEPGRAVSAGVYEGRDTKNMPRAELADLIKDLTAQMMA 686 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AARIRDEI+ LK +G+D Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714 >gi|325690568|gb|EGD32571.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK115] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMVKKLEGQMQEAAGLLDFELAAQIRDMILEIKT 660 >gi|157149718|ref|YP_001450327.1| excinuclease ABC subunit B [Streptococcus gordonii str. Challis substr. CH1] gi|189037999|sp|A8AX17|UVRB_STRGC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157074512|gb|ABV09195.1| excinuclease ABC, B subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/657 (54%), Positives = 476/657 (72%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L + EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAKFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I L Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKTAL 608 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D T + I+ SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 609 PDKEET-VEIE----SLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|313892790|ref|ZP_07826371.1| excinuclease ABC, B subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313442721|gb|EFR61132.1| excinuclease ABC, B subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 724 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/681 (53%), Positives = 487/681 (71%), Gaps = 28/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L +GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS++++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSELVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+IEIFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A++ I+ EL+ +L +L+ RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKDKMRIAVERIEAELEEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVT+PQ+ MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTMPQVRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E Q + EQIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VQTNVAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD IT S+Q AIDET RRR Q +N +HNI P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRITGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTN---------------ISID------AQQLS------LSKKKGKAHLKSLRKQMHL 773 T+ +D AQ +S ++ ++ ++ L +QM Sbjct: 613 DIVTDGKAFSPKKGKKKSSTTGMDHGHEPYAQDISSPKVADITPEELFNKIEELDRQMKA 672 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE+AA++RD++ L+ Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693 >gi|307704944|ref|ZP_07641835.1| excinuclease ABC, B subunit [Streptococcus mitis SK597] gi|307621558|gb|EFO00604.1| excinuclease ABC, B subunit [Streptococcus mitis SK597] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D ++ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFMIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYETEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR LRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRGLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|260597170|ref|YP_003209741.1| excinuclease ABC subunit B [Cronobacter turicensis z3032] gi|260216347|emb|CBA29364.1| UvrABC system protein B [Cronobacter turicensis z3032] Length = 673 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/664 (55%), Positives = 475/664 (71%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI ++ +G+ Q LLGVTGSGKTFTMA VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ +Y Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GM+RGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P T+ VSATPG++ELE+ I++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGSEIIDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E +VRY+HS++ T+E Sbjct: 425 VRPVGTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILY D IT S+ AI+ET RRREKQ +N++H I PQ + +K+++++ L E+ Sbjct: 545 NVNGKAILYGDKITPSMARAINETERRREKQQAYNEEHGIVPQGLNKKVVDIL--ALGEN 602 Query: 741 AATTNISIDAQQLSL----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A T + ++ + K + + L QM A NL FEEAA+IRD++ Sbjct: 603 IAKTKAKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQIRDKL 662 Query: 791 KRLK 794 +L+ Sbjct: 663 HQLR 666 >gi|125718171|ref|YP_001035304.1| excinuclease ABC subunit B [Streptococcus sanguinis SK36] gi|189038006|sp|A3CNJ9|UVRB_STRSV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|125498088|gb|ABN44754.1| Helicase subunit of the DNA excision repair complex, subunit B, putative [Streptococcus sanguinis SK36] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYKPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|269795319|ref|YP_003314774.1| excinuclease ABC subunit B [Sanguibacter keddieii DSM 10542] gi|269097504|gb|ACZ21940.1| Excinuclease ABC subunit B [Sanguibacter keddieii DSM 10542] Length = 699 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/687 (51%), Positives = 481/687 (70%), Gaps = 25/687 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ ++Y PSGDQP AIA+L + I EK +LLG TG+GK+ T A +IE Sbjct: 4 VTDLQRTVAPFEVISEYTPSGDQPTAIAELSQRIQGGEKDVVLLGATGTGKSATTAWLIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+ +TDT+IEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTFIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN++++R+RHSAT +LL R D IVV+SVSCIYG+G+ + Y +V+L +GD V++ LL Sbjct: 124 INDEVERLRHSATSNLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLDVGDQVDRDTLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTG Sbjct: 184 KFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIEAIQTLHPLTGDV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +RN +I ++ +HYV + A+ I+ EL+ RL +E + +LLEAQRL R TYD+ Sbjct: 243 VRNETSIHLFPATHYVAGPERMEKAIASIEAELEERLATMEAQNKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMMREIGSCSGIENYSRHIDGRGPGTAPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L ++GFRLPS MDNRPLR+EE+ T+ +SATPG +EL G VEQIIR Sbjct: 363 MSRKRNLVDHGFRLPSAMDNRPLRWEEFVDRIGQTVYLSATPGKYELSMSDGF-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ + Q++D+ +EI + A++ R+L+T LTK+MAEDLT+Y ++ +RVR Sbjct: 422 PTGLIDPEVVVKPTKGQIDDLLEEIRVRAEKDERVLVTTLTKKMAEDLTDYFLDKGVRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YADT+T S+ +A++ET RRREKQ+ +N +H I+P +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADTVTPSMAMALEETDRRREKQVAYNLEHGIDPTPLRKKIS 601 Query: 731 EVIDPILLEDAATTNI--------SIDAQQLSLSKKKGKAH---------------LKSL 767 +V D + ED T + + L K+G ++ L Sbjct: 602 DVTDMLAREDIDTRELLEGGYRKPAKGGAPLPGGPKEGATSGNRLAVAAAGDLVGLIQEL 661 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH AA L FE AAR+RDE+ LK Sbjct: 662 DEQMHAAAAELQFELAARLRDEVSGLK 688 >gi|28212086|ref|NP_783030.1| excinuclease ABC subunit B [Clostridium tetani E88] gi|81841130|sp|Q890X8|UVRB_CLOTE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|28204529|gb|AAO36967.1| excinuclease ABC subunit B [Clostridium tetani E88] Length = 661 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/660 (54%), Positives = 470/660 (71%), Gaps = 14/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ + + P GDQP AI + GI +K Q LLGVTGSGKTFTMAK+IE +Q+P +V+A Sbjct: 4 LKVHSKFEPKGDQPKAIRSISDGILKGDKYQTLLGVTGSGKTFTMAKIIEQVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N+VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENSVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+VSSVSCIYG+G+ E Y + + L+ G ++ E+L LV+ QY+R Sbjct: 124 SATSALLERKDVIIVSSVSCIYGLGNPEEYKNLTISLREGMEKDRDEILKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFRV GD ++IFP+ ++A RV FG++IE+I EF LTG+ + + I+ Sbjct: 184 EINFVRGTFRVRGDVLDIFPASSSNIAIRVEFFGDEIEKIREFDSLTGEIVGKRNHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L +K I+EEL++R+ E KE +LLEAQR++QR +D+EM+ G C Sbjct: 244 PASHFATSKERLEVGIKKIEEELEIRVQEFIKEDKLLEAQRIKQRTNFDIEMMRELGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y PED LLFVDESHVT+PQ+ GMY GD RK L Y Sbjct: 304 GIENYSRILDGRAAGTPPQTLLDYFPEDFLLFVDESHVTLPQVRGMYGGDRSRKDNLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + VSATPG EL++ + EQIIRPTGL+DP + Sbjct: 364 GFRLPSAYDNRPLKFNEFQSKLNRVVFVSATPGDHELDKSSN-VAEQIIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y IN + G R+L+T LTK+MAEDLTEY E NI+ RY+HS++ T+E Sbjct: 423 VKPIKGQIDDLYSNINETIKNGFRVLVTTLTKKMAEDLTEYFKEMNIKTRYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQ IGRAAR Sbjct: 483 RMKIIRELRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSDRSLIQIIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ AI ET RRR Q+E+NK++NI PQ++ + I EVI+ Sbjct: 543 NSESKVIMYADNITKSMDRAIKETNRRRVIQMEYNKENNIVPQTIIKDIREVIE------ 596 Query: 741 AATTNISIDAQQLSLSK--KKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEIKRLK 794 AT + +A+ SL + + +L+ L M AA L FE+AA RD I++LK Sbjct: 597 -ATKVVEEEAEYDSLEEAIQANNENLEELISKYEADMRKAAKELEFEKAAHYRDIIQKLK 655 >gi|262282394|ref|ZP_06060162.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA] gi|262261685|gb|EEY80383.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|153814663|ref|ZP_01967331.1| hypothetical protein RUMTOR_00878 [Ruminococcus torques ATCC 27756] gi|317501127|ref|ZP_07959333.1| UvrABC system protein B [Lachnospiraceae bacterium 8_1_57FAA] gi|331090128|ref|ZP_08339017.1| UvrABC system protein B [Lachnospiraceae bacterium 3_1_46FAA] gi|145848157|gb|EDK25075.1| hypothetical protein RUMTOR_00878 [Ruminococcus torques ATCC 27756] gi|316897514|gb|EFV19579.1| UvrABC system protein B [Lachnospiraceae bacterium 8_1_57FAA] gi|330402590|gb|EGG82159.1| UvrABC system protein B [Lachnospiraceae bacterium 3_1_46FAA] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/654 (54%), Positives = 474/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIDQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++R Sbjct: 64 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y M++ L+ G + ++ E+++ L++ QY R Sbjct: 124 SATMALTERRDVIIVASVSCIYGLGSPVDYQNMVISLRPGMTKDRDEVMAKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EI P++ DVA R+ FG+++E I+E LTG+ + + I+ Sbjct: 184 DMDFHRGTFRVRGDVVEIIPAYESDVAIRIEFFGDEVERITEIDILTGEVKDELSHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + + A+ I++EL R+ E + +LLEAQR+ +R +D+EML+ TG C Sbjct: 244 PASHYVVDKENIKRAVNDIEKELDERVKEFKHADKLLEAQRIAERTNFDIEMLKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G +PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD RK+TL +Y Sbjct: 304 GIENYSRHLAGLSPGQAPYTLIDYFPDDFIIMIDESHKTIPQIGGMYHGDQSRKSTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E+ + + VEQ+IRPTGL+DP V Sbjct: 364 GFRLPSAKDNRPLNFEEFESKINQALFVSATPGVYE-EEHELLRVEQVIRPTGLLDPEVV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN Q ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS+V TLE Sbjct: 423 VRPVEGQIDDLIGEINKEISQKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSDVDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+QLAIDET RRRE Q+++N++H I P+++++ + ++I + + Sbjct: 543 NAQGHVIMYADKITESMQLAIDETKRRREIQMKYNEEHGITPKTIQKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ S+S K+ K + L KQM AA LNFE AA +RD++ LK Sbjct: 601 VAAEELKLEKDPESMSVKELKKLIADLTKQMKKAAAELNFESAAELRDKLTELK 654 >gi|332366708|gb|EGJ44449.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1059] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ ELK +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELKEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI A++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVCLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|332160999|ref|YP_004297576.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604871|emb|CBY26369.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp. palearctica Y11] gi|325665229|gb|ADZ41873.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863978|emb|CBX74060.1| UvrABC system protein B [Yersinia enterocolitica W22703] Length = 670 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QR+ QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKIELAERRKVLLANNKLIEEQRITQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPSDGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DP 735 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPST 604 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ SL+ K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 605 RGKGKGRGGKVADTNNYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 663 >gi|56964823|ref|YP_176554.1| excinuclease ABC subunit B [Bacillus clausii KSM-K16] gi|81822037|sp|Q5WDG7|UVRB_BACSK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56911066|dbj|BAD65593.1| excinuclease ABC subunit B UvrB [Bacillus clausii KSM-K16] Length = 660 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 468/655 (71%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P GDQP AI Q++ GI + +K Q LLG TG+GKTFTM+ VI+A+ +P +VMA Sbjct: 5 FQLVSDYSPQGDQPKAIEQIVTGIQNGKKHQTLLGATGTGKTFTMSNVIQAVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKQLFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y +++ ++ G +++ LL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRDLVLSIRTGMEMDRNSLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ ++ RV FG++IE I+E LTG+ + I+ Sbjct: 185 DINFVRGTFRVRGDVVEIFPASRDEQCMRVEFFGDEIERITEVDALTGEIKGERHHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I+ EL+ RL L KE +LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKKAIANIEVELEERLSVLRKEEKLLEAQRLEQRTRYDLEMMAEMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL ++ P+D LL VDESHVT+PQ+ GMY GD RK L + Sbjct: 305 GIENYSRHLTLREAGATPYTLLDFFPKDFLLIVDESHVTLPQVRGMYNGDRARKEILVNH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLKFEEFEEKVGQAVYVSATPGPYELEHTPE-MVEQIIRPTGLLDPVVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +I+ + R+L+T LTK+MAEDLT+YL E I+VRY+HSEVKTLE Sbjct: 424 VRPIEGQIDDLIGQIHDQIAKDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR LRLG FDVL+GINLLREG+DIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 484 RLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S+++AI+ET RRR+ Q +N++H I PQ+++++I EV+ + Sbjct: 544 NANGRVIMYADKMTHSMEVAINETKRRRQIQQAYNEQHGITPQTIQKRIPEVVQATYAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + L KK+ +A ++ + +M AA LNFE AA +RD + LK+ Sbjct: 604 ETGDYKASSTSSKKLGKKERQATIERVEAEMKQAAKELNFERAAELRDVLLELKA 658 >gi|325694670|gb|EGD36577.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK150] Length = 662 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEVQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|238019503|ref|ZP_04599929.1| hypothetical protein VEIDISOL_01372 [Veillonella dispar ATCC 17748] gi|237864202|gb|EEP65492.1| hypothetical protein VEIDISOL_01372 [Veillonella dispar ATCC 17748] Length = 724 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/681 (53%), Positives = 482/681 (70%), Gaps = 28/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS++++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSELVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+IEIFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIVERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A++ I+ EL +L +L+ RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMKVAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVTIPQ+ MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPHTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E Q I EQIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VQTNIAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q AIDET RRR +Q +N +HNI P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAEQEAYNIEHNITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTN---------------ISID------AQQLSLSKKKGKA------HLKSLRKQMHL 773 T+ +D Q +S K ++ L +QM Sbjct: 613 DMVTDGKDFSSKKGKKKSSTTGMDHGHEPYVQDISTPKVADITPEELFNKIEELDRQMKA 672 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE+AA++RD++ L+ Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693 >gi|314981311|gb|EFT25405.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA3] gi|315091730|gb|EFT63706.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA4] Length = 701 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/690 (52%), Positives = 486/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLEFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|22126903|ref|NP_670326.1| excinuclease ABC subunit B [Yersinia pestis KIM 10] gi|45440838|ref|NP_992377.1| excinuclease ABC subunit B [Yersinia pestis biovar Microtus str. 91001] gi|108813005|ref|YP_648772.1| excinuclease ABC subunit B [Yersinia pestis Nepal516] gi|145599810|ref|YP_001163886.1| excinuclease ABC subunit B [Yersinia pestis Pestoides F] gi|149366848|ref|ZP_01888882.1| excinuclease ABC subunit B [Yersinia pestis CA88-4125] gi|162419328|ref|YP_001605949.1| excinuclease ABC subunit B [Yersinia pestis Angola] gi|165924747|ref|ZP_02220579.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938367|ref|ZP_02226925.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str. IP275] gi|166011595|ref|ZP_02232493.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211368|ref|ZP_02237403.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167419919|ref|ZP_02311672.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423960|ref|ZP_02315713.1| UvrABC system, B protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469629|ref|ZP_02334333.1| UvrABC system, B protein [Yersinia pestis FV-1] gi|218928320|ref|YP_002346195.1| excinuclease ABC subunit B [Yersinia pestis CO92] gi|229841095|ref|ZP_04461254.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843199|ref|ZP_04463345.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis biovar Orientalis str. India 195] gi|229894033|ref|ZP_04509219.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis Pestoides A] gi|229903443|ref|ZP_04518556.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis Nepal516] gi|270487220|ref|ZP_06204294.1| excinuclease ABC, B subunit [Yersinia pestis KIM D27] gi|294503158|ref|YP_003567220.1| excinuclease ABC subunit B [Yersinia pestis Z176003] gi|20532284|sp|Q8ZGW7|UVRB_YERPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|123246289|sp|Q1CFQ8|UVRB_YERPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189038012|sp|A4TNQ1|UVRB_YERPP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238687290|sp|A9R3D3|UVRB_YERPG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|21959940|gb|AAM86577.1|AE013904_1 excision nuclease subunit B [Yersinia pestis KIM 10] gi|45435696|gb|AAS61254.1| excinuclease ABC subunit B [Yersinia pestis biovar Microtus str. 91001] gi|108776653|gb|ABG19172.1| Excinuclease ABC subunit B [Yersinia pestis Nepal516] gi|115346931|emb|CAL19820.1| excinuclease ABC subunit B [Yersinia pestis CO92] gi|145211506|gb|ABP40913.1| Excinuclease ABC subunit B [Yersinia pestis Pestoides F] gi|149291222|gb|EDM41297.1| excinuclease ABC subunit B [Yersinia pestis CA88-4125] gi|162352143|gb|ABX86091.1| UvrABC system, B protein [Yersinia pestis Angola] gi|165913745|gb|EDR32364.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923807|gb|EDR40939.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165989543|gb|EDR41844.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207139|gb|EDR51619.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962660|gb|EDR58681.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056809|gb|EDR66572.1| UvrABC system, B protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679213|gb|EEO75316.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis Nepal516] gi|229689546|gb|EEO81607.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis biovar Orientalis str. India 195] gi|229697461|gb|EEO87508.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703918|gb|EEO90931.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis Pestoides A] gi|262361195|gb|ACY57916.1| excinuclease ABC subunit B [Yersinia pestis D106004] gi|262365248|gb|ACY61805.1| excinuclease ABC subunit B [Yersinia pestis D182038] gi|270335724|gb|EFA46501.1| excinuclease ABC, B subunit [Yersinia pestis KIM D27] gi|294353617|gb|ADE63958.1| excinuclease ABC subunit B [Yersinia pestis Z176003] gi|320014295|gb|ADV97866.1| excinulease of nucleotide excision repair, DNA damage recognition component [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 671 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G I+EQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLT+YL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ P + Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSM 604 Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ Q SLS K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664 >gi|239907002|ref|YP_002953743.1| UvrABC system protein B [Desulfovibrio magneticus RS-1] gi|239796868|dbj|BAH75857.1| UvrABC system protein B [Desulfovibrio magneticus RS-1] Length = 685 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/676 (52%), Positives = 466/676 (68%), Gaps = 22/676 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ++++Y P GDQP AI +L + + Q LLG TG+GKTFTMA+V+ + RPA+VMA Sbjct: 3 FQLESEYLPRGDQPQAIDELARNLDQGVPSQTLLGATGTGKTFTMAQVVAKLNRPALVMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FPHNAVEYFVSYYDYYQPEAY+PRTDTYIEK+SSIN+ ID++RH Sbjct: 63 PNKTLAAQLYSEFKGLFPHNAVEYFVSYYDYYQPEAYLPRTDTYIEKDSSINDDIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL R D ++V+SVSCIYG+GS + Y +M++ L +G+ + +++L+ LV+ QY+R Sbjct: 123 AATHSLLTRRDVLIVASVSCIYGLGSRDYYERMVLTLSVGEKIGMEKVLARLVEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD IEI P++ + A R+ F +++E I E PLTG+ + ++ I+ Sbjct: 183 DYDFHRGVFRVRGDVIEIIPAYARERALRLEFFDDELEAIQETDPLTGEVLGTMDKAIIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV+ R LN A+ I+EEL++RL EL LL AQRLE R DLEM+E G C Sbjct: 243 PASHYVSDRANLNRAVSDIREELRLRLTELRGRNDLLAAQRLEMRTMQDLEMIEELGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G+PP TL +Y P+D +LFVDESH+T+PQI GMY GD RK TL +Y Sbjct: 303 GIENYSRHLDGRQAGDPPYTLLDYFPKDFILFVDESHITVPQIGGMYAGDRSRKQTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG WEL + +G++VEQIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLNFEEFLGRIGQAVYVSATPGDWELTRSEGVVVEQIIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E G R+L+T LTKRMAE+L EY + RY+HS++ TLE Sbjct: 423 VRPTKGQMDDLMAECRKRMAAGERVLVTTLTKRMAEELNEYFNSMGVTSRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II+ LR G+F VLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 483 RVAIIKALRQGEFAVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV +VILYAD +T+S+ A+DET RRREKQ N++ + P+SV + + V+D + + Sbjct: 543 NVGGRVILYADNMTRSMSAAMDETARRREKQEASNRETGLTPRSVVKAMDSVLDSLYAKG 602 Query: 740 DAATTNISIDAQQL---------------------SLSKKKGKAHLKSLRKQMHLAADNL 778 DA T + S +SKK + LK + ++M AA L Sbjct: 603 DAKTGSWSASGGGYATAGGGLGAGAAVHEEAEAYGGMSKKAMERKLKQVEREMREAAKAL 662 Query: 779 NFEEAARIRDEIKRLK 794 FE+AA+ RD+ L+ Sbjct: 663 EFEKAAQFRDQAATLR 678 >gi|304439582|ref|ZP_07399487.1| excision endonuclease subunit UvrB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371961|gb|EFM25562.1| excision endonuclease subunit UvrB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 656 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/654 (55%), Positives = 473/654 (72%), Gaps = 5/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI L+KG++ K Q LLGVTGSGKTFTMA VIE +QRP +V+A Sbjct: 3 FKIHSKFKPTGDQPEAIDGLVKGLNKGYKHQTLLGVTGSGKTFTMANVIEKVQRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SEFK FFP NA+EYFVSYYDYYQPEAYVP TDT+IEK+SSIN++ID++RH Sbjct: 63 HNKTLAYQLASEFKEFFPENAIEYFVSYYDYYQPEAYVPGTDTFIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIYG+G Y + + L+ G ++ E++S LV QY R Sbjct: 123 SATMALFERRDVVIVASVSCIYGLGDPIDYEHLAISLRPGMIRDRNEIMSKLVDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD++E+FP+ D + R+ FG++I+ I+E LTG + I Sbjct: 183 DINFIRGTFRVRGDTLEVFPASSSDRSIRIEFFGDEIDRITEIDTLTGNITGYLNHAFIT 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T ++ A++ IK EL RL EL + +LLEAQRLEQR YDLEML+ G C Sbjct: 243 PASHFATSSEKVDRAIETIKIELDERLKELRGQEKLLEAQRLEQRTNYDLEMLQEMGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG P TL +Y P+D LL +DESHVTIPQI GMY GD RK TL +Y Sbjct: 303 GIENYSRHLSGREPGSRPYTLIDYFPKDFLLIIDESHVTIPQIRGMYNGDRSRKQTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF E+ + I VSATPG +E E + VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLRFNEFESMVNQAIYVSATPGPYEKEHQEN-YVEQIIRPTGLLDPKIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN A++G R L+T LTK+MAEDLT+Y E I+V YMHS+V T+E Sbjct: 422 VRPIKGQIDDLVSEINKRAEKGERTLVTTLTKKMAEDLTKYFKELGIKVTYMHSDVDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG +DVL+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT GRAAR Sbjct: 482 RMEIIRDLRLGVYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTSGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YADTITKS+ + I ET RRR+ Q ++N HNI P+++++ I +VI + + Sbjct: 542 NVDGIVIMYADTITKSMDVTITETERRRKIQNQYNIDHNIVPKTIEKGIRDVIATTIASE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T +D + + + +A ++ L+ +M+ A+ LNFE AA IRD+I+ L+ Sbjct: 602 SNET-YKVDDE---FTNDEIEAMIEGLKVRMYKEAEGLNFEAAAEIRDKIEELR 651 >gi|52082051|ref|YP_080842.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580] gi|52787440|ref|YP_093269.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580] gi|319647917|ref|ZP_08002135.1| UvrABC system protein B [Bacillus sp. BT1B_CT2] gi|81825174|sp|Q65ED8|UVRB_BACLD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|52005262|gb|AAU25204.1| excinuclease ABC (subunit B) [Bacillus licheniformis ATCC 14580] gi|52349942|gb|AAU42576.1| UvrB [Bacillus licheniformis ATCC 14580] gi|113927091|emb|CAK18196.1| excinuclease ABC, subunit B [Bacillus licheniformis] gi|113927100|emb|CAK18204.1| excinuclease ABC, subunit B [Bacillus licheniformis] gi|317390258|gb|EFV71067.1| UvrABC system protein B [Bacillus sp. BT1B_CT2] Length = 661 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/656 (56%), Positives = 473/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI QL+KGI+ K Q LLG TG+GKTFTM+ VI+ + +P +V+A Sbjct: 5 FELVSNYQPQGDQPKAIDQLVKGINEGRKHQTLLGATGTGKTFTMSNVIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +M++ L+ +E+ ELL LV QY R Sbjct: 125 SATSALFERKDVIIVASVSCIYGLGSPEEYREMVLSLRTEMEIERNELLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I+EEL+ RL L +EG+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKKAIINIEEELEERLKALREEGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHVTIPQI GMY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVIDESHVTIPQIRGMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEKHIHNIVYVSATPGPYELEHTPE-MVEQIIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQQRIERNERVLVTTLTKKMSEDLTDYLKEIGIKVTYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N +VI+YAD IT S+++AI+ET RRRE+Q +N+KH I P+++ +KI +VI E Sbjct: 544 NAEGRVIMYADKITNSMEIAINETKRRREQQEAYNEKHGITPKTINKKIRDVIRATHAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + + + ++KK+ + + + M AA L+FE AA +RD + LKS Sbjct: 604 DQEEYQVKEEPKLSKMTKKEREKVIAQMESDMKEAAKALDFERAAELRDLLLELKS 659 >gi|317485270|ref|ZP_07944150.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] gi|316923396|gb|EFV44602.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] Length = 678 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/678 (51%), Positives = 471/678 (69%), Gaps = 24/678 (3%) Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 ++ + F+++T+Y P+GDQPAAI QL I + + Q+LLGVTGSGKTFT+A VI + Sbjct: 2 NTTETPLFKLRTEYVPTGDQPAAIEQLASNIEAGVRDQVLLGVTGSGKTFTVANVIAQVN 61 Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RPA+V+APNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+ Sbjct: 62 RPALVLAPNKTLAAQLYNEFRALFPENAVEYFVSYYDYYQPEAYVPASDTYIEKDSAIND 121 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 ID++RH+AT +LL R D I+V+SVSCIYG+GS E Y+++I+ +++G V +++ LV Sbjct: 122 DIDKLRHAATHALLTRRDVIIVASVSCIYGLGSPEYYARLIIPVEVGQRVSMDAIITKLV 181 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY+R D+ RGTFRV GD +E+ P++ + A R+ FG++IE + E PLTG+ + N Sbjct: 182 DVQYQRNDMDFHRGTFRVRGDVLEVIPAYEHERALRLEFFGDEIEAVREIDPLTGEILGN 241 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 + IY SHYV+ R L AM +++EL RL + + +L+EAQRLEQR DLEM+ Sbjct: 242 IGKTVIYPASHYVSDRDNLERAMSDVRDELGERLRLFQSQNKLVEAQRLEQRTQLDLEMM 301 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 + G C IENYSR+L GR G+PP TL +Y P+D +LF DESH++IPQ+ GM++GD R Sbjct: 302 QELGYCTGIENYSRHLDGRKEGDPPATLLDYFPDDFVLFADESHISIPQVGGMFKGDRSR 361 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL ++GFRLPS +DNRPL F E+ + VSATPG WELE+ QGI+ EQIIRPTG Sbjct: 362 KTTLVDFGFRLPSALDNRPLEFHEFLERLNQVVYVSATPGKWELERSQGIVAEQIIRPTG 421 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP VE+R + Q++D+ E ++ R+L+T LTKRMAEDLTEYL + RY+H Sbjct: 422 LLDPEVEVRPVKGQIDDLLGECRARVEKHERVLVTTLTKRMAEDLTEYLNSMGVAARYLH 481 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ T+ER+ II+ LR G+FDVLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQ Sbjct: 482 SDIDTMERMAIIKALRAGEFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSTGSLIQ 541 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T GRAARN KV+LYADT+T S++ A+ ET RRR KQ + N+ H I P ++ + + Sbjct: 542 TFGRAARNAGGKVLLYADTVTASMRAAMGETARRRAKQQDWNETHGITPTTISKPLATPF 601 Query: 734 DPILLEDA-----------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 D + A+ ++ I AQ ++ +LK ++M AA Sbjct: 602 DSLYTSSGEGKGKRGRGKQAKQPAEASASVDITAQNVA-------RYLKQFEREMRDAAR 654 Query: 777 NLNFEEAARIRDEIKRLK 794 +L FE+AA +RD IK+L+ Sbjct: 655 DLEFEKAAALRDRIKQLR 672 >gi|332361037|gb|EGJ38841.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1056] Length = 662 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K+ E+ D I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKK---EIRDLISVTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALQDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|307706695|ref|ZP_07643501.1| excinuclease ABC, B subunit [Streptococcus mitis SK321] gi|307617939|gb|EFN97100.1| excinuclease ABC, B subunit [Streptococcus mitis SK321] Length = 662 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIKQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EK+G+LLE QRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKQGKLLEVQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + II EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETII-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|293606135|ref|ZP_06688500.1| excision endonuclease subunit UvrB [Achromobacter piechaudii ATCC 43553] gi|292815590|gb|EFF74706.1| excision endonuclease subunit UvrB [Achromobacter piechaudii ATCC 43553] Length = 686 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/645 (55%), Positives = 466/645 (72%), Gaps = 7/645 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P+GDQP AI L +GI Q LLGVTGSGKT+TMA VI + RPA+V+A Sbjct: 25 FQLFQPYPPAGDQPTAIEGLTQGIEDGLMFQTLLGVTGSGKTYTMANVIAQLGRPALVLA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+SSINE I++MR Sbjct: 85 PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLLER D I+V +VSCIYGIG+ Y M++ L+ GD + ++E+L+ LV QY R Sbjct: 145 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRSGDQISRREILARLVAMQYTRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+IFP+ ++A R+++F ++IE + F PLTG+ + + +Y Sbjct: 205 DAEFTRGVFRVRGETIDIFPAESAELALRLTLFDDEIESLELFDPLTGRIRQKLPRFTVY 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR T+ A++ IK EL+ R+ +G L+EAQRLEQR +DLEML+ G C+ Sbjct: 265 PGSHYVTPRDTVLRAIETIKVELRDRVKRFVDDGHLVEAQRLEQRTRFDLEMLQELGFCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPPPTL +Y+P D+L+F+DESHVTI Q+S MYRGD RK TL +Y Sbjct: 325 GIENYSRHLSGAAPGEPPPTLIDYLPPDALMFIDESHVTIGQLSAMYRGDRSRKETLVQY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+ EE+ + VSATP ++E E +VEQ++RPTGLVDP VE Sbjct: 385 GFRLPSAMDNRPLKLEEFEARMRQCVFVSATPAAYEKEHADN-VVEQVVRPTGLVDPLVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + ARTQV+D+ +I G R+L+T LTKRMAEDLT++L E ++VRY+HS++ T+E Sbjct: 444 VLPARTQVDDLLGQIKARVSVGERVLVTTLTKRMAEDLTDFLSEHGVKVRYLHSDIDTVE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 504 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N ILYAD +T S+Q A++ET+RRR KQL+ N + I + V++ + E+ID I+ Sbjct: 564 NLNGHAILYADRVTDSMQRAMEETSRRRAKQLQFNIDNGITARGVRKAVRELIDGIV--- 620 Query: 741 AATTNISIDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEE 782 A + +++A + K KA LK L K M A NL FE+ Sbjct: 621 APVQHDALEAAIPAEFLKDEKALARELKRLEKLMMDHARNLEFEQ 665 >gi|296129801|ref|YP_003637051.1| excinuclease ABC, B subunit [Cellulomonas flavigena DSM 20109] gi|296021616|gb|ADG74852.1| excinuclease ABC, B subunit [Cellulomonas flavigena DSM 20109] Length = 701 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/689 (51%), Positives = 488/689 (70%), Gaps = 27/689 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ ++Y PSGDQP AI +L + + EK +LLG TG+GK+ T A +IE Sbjct: 4 VTDLQRTVAPFEVVSEYTPSGDQPTAIEELAARVRAGEKDVVLLGATGTGKSATTAWLIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+ ++DTYIEK+SS Sbjct: 64 ELQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VVS+VSCIYG+G+ + Y +V L +GD V++ +LL Sbjct: 124 INEEVERLRHSATSSLLTRRDVVVVSTVSCIYGLGTPQEYVDRMVTLAVGDQVDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD++EI P + E++A R+ FG++IE I+ +PLTG Sbjct: 184 KFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIEAIATLHPLTGDV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +R+ + + ++ +HYV + A+ I+ EL+ RL +LE++ +LLEAQRL+ R TYD+ Sbjct: 243 VRSEQQMHVFPATHYVAGPERMERAIAGIEAELEERLADLERQNKLLEAQRLQMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI M+ GD Sbjct: 303 EMMRQIGSCSGIENYSRHIDGRAPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMFEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK +L ++GFRLPS +DNRPLR+EE+ T+ +SATPG +EL G+ VEQIIR Sbjct: 363 MSRKRSLVDHGFRLPSAIDNRPLRWEEFVERIGQTVYLSATPGDYELSMADGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ + Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E+++RVR Sbjct: 422 PTGLVDPQVVVKPTKGQIDDLLGEIRDRVERDERVLVTTLTKKMSEDLTDYLLEKDVRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE LVAILDADK+GFLRS S Sbjct: 482 YLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGKS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAAR+V+ +V +YADT+T +++ A+DET RRREKQ+ +N +H I+PQ +++KI Sbjct: 542 LIQTIGRAARHVSGQVHMYADTVTPAMRQALDETDRRREKQIAYNLEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNISIDA-QQLSLSK-------------------KKGKAH-----LK 765 ++ D + EDA T + A +Q S K AH ++ Sbjct: 602 DITDMLAREDADTAELLGGAGRQASRGKAPVPGLGSRPSGGDERTRLAGAAAHDLADLVQ 661 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +QMH AA L FE AAR+RDEI LK Sbjct: 662 QLTEQMHAAAGELQFELAARLRDEISGLK 690 >gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221311467|ref|ZP_03593314.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221315794|ref|ZP_03597599.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320709|ref|ZP_03602003.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi|221324994|ref|ZP_03606288.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str. SMY] gi|3123297|sp|P37954|UVRB_BACSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B; AltName: Full=Protein dinA gi|99032024|pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase Activity Of Uvrb gi|126031163|pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure Of Uvrb Bound To Fluorescein-Adducted Dna gi|2618841|gb|AAC67270.1| excinuclease ABC subunit B [Bacillus subtilis] gi|2636043|emb|CAB15534.1| excinuclease ABC (subunit B) [Bacillus subtilis subsp. subtilis str. 168] Length = 661 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 477/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI +K Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+ +E+ ELL LV QY R Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + + + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L + + G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +E+E +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPLID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N +VI+YAD ITKS+++AI+ET RRRE+Q N++H I P+++ ++I +VI + E Sbjct: 544 NAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D A + ++KK+ + ++ + +M AA L+FE AA +RD + LK+ Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 >gi|134101920|ref|YP_001107581.1| excinuclease ABC subunit B [Saccharopolyspora erythraea NRRL 2338] gi|133914543|emb|CAM04656.1| excinuclease ABC, subunit B [Saccharopolyspora erythraea NRRL 2338] Length = 700 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/688 (52%), Positives = 483/688 (70%), Gaps = 28/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M +DY P+GDQP AI L + I+S E +LLG TG+GK+ T A +IE +QRP +V+ Sbjct: 11 FRMVSDYQPAGDQPQAIDDLERRINSGETDVVLLGATGTGKSATTAWLIERVQRPTLVLE 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE ++R+RH Sbjct: 71 PNKTLAAQFANELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEDVERLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R DC+VVSSVSCIYG+G+ +SY +QL++G ++ LL +LV QY R Sbjct: 131 SATSNLLSRRDCVVVSSVSCIYGLGTPQSYLDRSIQLQVGGETDRDVLLRALVDVQYTRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++E+ P++ E++A R+ MFG++I+ + +PLTG+ +R V+ ++I+ Sbjct: 191 DIAFARGTFRVRGDTVEVIPAY-EELAVRIEMFGDEIDRLYYLHPLTGEVVREVDELRIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL +L +LEK+ +LLEAQRL R YD+EM+ G C Sbjct: 250 PATHYVAGPERMEKAIRSIEAELDEQLAKLEKQNKLLEAQRLRMRTQYDIEMMRQVGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R G P TL +Y P+D LL +DESHVT+PQ+ GMY GD RK TL E+ Sbjct: 310 GIENYSRHVDDRPAGSAPATLLDYFPDDFLLIIDESHVTVPQVGGMYEGDASRKRTLVEH 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 370 GFRLPSALDNRPLTWEEFADRIGQTVYLSATPGPYEMGQAGGEFVEQVIRPTGLVDPEVV 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI A++ R+L+T LTK+MAEDLT+Y E IRVRY+HSEV TL Sbjct: 430 VKPTEGQIDDLVHEIRERAERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSEVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 490 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N++ I+PQ +++KI +++D + E Sbjct: 550 NVSGQVHMYADRITDSMRHAIDETNRRREKQIAYNEEKGIDPQPLRKKIADILDRVYSES 609 Query: 741 AATTNISIDAQQLSLSKKK-------GKAHL------------------KSLRKQMHLAA 775 T +++ ++S+ K G A L + L QM AA Sbjct: 610 EDTEEVAVGGSGRNVSRGKKPSGEAVGSAGLLEDRDIKSMPRAELADLVQQLNDQMMSAA 669 Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803 +L FE AAR+RDEI+ LK +G+D Sbjct: 670 RDLQFELAARLRDEIQDLKKE--LRGMD 695 >gi|328946381|gb|EGG40522.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1087] Length = 662 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEKLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMTYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|225868289|ref|YP_002744237.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. zooepidemicus] gi|259710333|sp|C0MDC6|UVRB_STRS7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|225701565|emb|CAW98790.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. zooepidemicus] Length = 663 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 +D F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P Sbjct: 5 RDFKAFKLVSKYDPSGDQPQAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + + + Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDKARKQ 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ IVEQIIRPTGL+ Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTK+MAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRIERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN + VI+YAD +T S+Q AIDET RRR Q+ +N++H I PQ++K+ I ++I Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A T + + ++ S++ + +K L+K M AA+ L+FE AA++RD I LK+ Sbjct: 604 SRAVEAKATEAETNYESMTRSER--QEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661 >gi|315221703|ref|ZP_07863619.1| excinuclease ABC subunit B [Streptococcus anginosus F0211] gi|315189190|gb|EFU22889.1| excinuclease ABC subunit B [Streptococcus anginosus F0211] Length = 662 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/658 (54%), Positives = 473/658 (71%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI+ + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFMTNDENMEIAIGKIQAELEEQLAFFEKEGKLLEAQRLKQRTDYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ VDESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEREQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N VI+YADTIT S+Q A+DET RRR+ Q+ +N++H I PQ+++++I ++I L Sbjct: 549 NSEGHVIMYADTITDSMQKAMDETARRRQIQMAYNEEHGIVPQTIQKEIRDLISVTKSAL 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +I SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 609 PDKGEVVDIE------SLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|313809797|gb|EFS47518.1| excinuclease ABC subunit B [Propionibacterium acnes HL083PA1] Length = 701 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ R Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + A T + + ++L +SK GK + Sbjct: 602 DITEMLARGGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|307709471|ref|ZP_07645928.1| excinuclease ABC, B subunit [Streptococcus mitis SK564] gi|307619785|gb|EFN98904.1| excinuclease ABC, B subunit [Streptococcus mitis SK564] Length = 662 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/648 (54%), Positives = 471/648 (72%), Gaps = 4/648 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVINDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRD 653 >gi|108807059|ref|YP_650975.1| excinuclease ABC subunit B [Yersinia pestis Antiqua] gi|167400431|ref|ZP_02305944.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|123072880|sp|Q1C942|UVRB_YERPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|108778972|gb|ABG13030.1| Excinuclease ABC subunit B [Yersinia pestis Antiqua] gi|167050380|gb|EDR61788.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 671 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGVPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V +Y Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G I+EQ++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A R+L+T LTKRMAEDLT+YL E +VRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +KI +++ P + Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSM 604 Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ Q SLS K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664 >gi|15675262|ref|NP_269436.1| excinuclease ABC subunit B [Streptococcus pyogenes M1 GAS] gi|71910888|ref|YP_282438.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS5005] gi|209559562|ref|YP_002286034.1| excinuclease ABC subunit B [Streptococcus pyogenes NZ131] gi|306827162|ref|ZP_07460452.1| excision endonuclease subunit UvrB [Streptococcus pyogenes ATCC 10782] gi|20532293|sp|Q99ZA5|UVRB_STRP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226698342|sp|B5XLX7|UVRB_STRPZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|13622435|gb|AAK34157.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes M1 GAS] gi|71853670|gb|AAZ51693.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS5005] gi|209540763|gb|ACI61339.1| Excinuclease ABC (Subunit B), helicase subunit of the DNA excision repair complex [Streptococcus pyogenes NZ131] gi|304430618|gb|EFM33637.1| excision endonuclease subunit UvrB [Streptococcus pyogenes ATCC 10782] Length = 663 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/657 (54%), Positives = 474/657 (72%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RS+ Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRSSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|321313063|ref|YP_004205350.1| excinuclease ABC subunit B [Bacillus subtilis BSn5] gi|291486068|dbj|BAI87143.1| excinuclease ABC subunit B [Bacillus subtilis subsp. natto BEST195] gi|320019337|gb|ADV94323.1| excinuclease ABC subunit B [Bacillus subtilis BSn5] Length = 661 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 477/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI +K Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+ +E+ ELL LV QY R Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + + + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L + + G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +E+E +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPLID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N +VI+YAD ITKS+++AI+ET RRRE+Q N++H I P+++ ++I +VI + E Sbjct: 544 NAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D A + ++KK+ + ++ + +M AA L+FE AA +RD + LK+ Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 >gi|148927424|ref|ZP_01810941.1| excinuclease ABC, B subunit [candidate division TM7 genomosp. GTL1] gi|147887215|gb|EDK72680.1| excinuclease ABC, B subunit [candidate division TM7 genomosp. GTL1] Length = 656 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/655 (54%), Positives = 463/655 (70%), Gaps = 6/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++T Y P+GD P AIAQL+ G+ EK Q LLGVTGSGKTFTMA +I+ Q P +V+A Sbjct: 4 FNLKTTYEPTGDXPTAIAQLVSGLDKGEKTQTLLGVTGSGKTFTMANIIQQRQAPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEFK+FFP N V YFVSY+DYYQPEAY+ +DTYIEK+S INE+IDR+RH Sbjct: 64 HNKTLAAQLFSEFKSFFPENXVHYFVSYFDYYQPEAYIASSDTYIEKDSKINEEIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D I+V+SVSCIYGIGS Y M + +K G+ Q + + L QY R Sbjct: 124 AATAALLTRRDVIIVASVSCIYGIGSPGDYGNMAITVKRGERRAQNKFIRWLTDIQYHRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R FRV GD +++FP+ E A+R+ FG+D++ ++E PLTG+ I + I I+ Sbjct: 184 DIDFSRSAFRVRGDVVDVFPAGGE-TAYRIEFFGDDVDRLTEINPLTGEIINEPDRITIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP+ L A++ I+ ELK RL E+ G+LLEAQRL QR YDLEMLE TG + Sbjct: 243 PGSHYVTPQDKLKVAIERIRSELKDRLAYFEQSGKLLEAQRLGQRTKYDLEMLEETGFVK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLT R PGE P TL +Y P+D LL +DESH+TIPQ+ GMY GD RK L E+ Sbjct: 303 GIENYSRYLTDREPGEQPATLLDYFPDDFLLLIDESHMTIPQVRGMYNGDRARKEILVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ I VSATPG +EL + +Q+IRPTGL+DPP+E Sbjct: 363 GFRLPSALDNRPLTFTEFENHINKVIFVSATPGEYELXRSPE-PAQQVIRPTGLLDPPIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R+L+T LTKRMAEDL+ YL E I+ Y+HS++ TLE Sbjct: 422 VRKTKGQIDDLIAEIRDRTEKRQRVLVTTLTKRMAEDLSNYLLELQIKTAYIHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +I+RDLRLG +DVLVGINLLREGLD+PE LVAI+DADKEGFLRS ++LIQT+GRAAR Sbjct: 482 RSDILRDLRLGIYDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSGSALIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 + N +VI+YADTITKS+Q AIDET RRRE Q +NK+HNI P+ V + I E + I+ Sbjct: 542 HENGQVIMYADTITKSMQYAIDETNRRREIQEAYNKEHNITPRGVDKVIDEGLRAIIPMK 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D +++ K HL + L QM LAA NL FE+AA +RD ++ +K Sbjct: 602 EEEKKPKVDLKKIP---KDEYGHLVRELTAQMELAAANLEFEKAAELRDTVEEIK 653 >gi|291009196|ref|ZP_06567169.1| excinuclease ABC subunit B [Saccharopolyspora erythraea NRRL 2338] Length = 717 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/688 (52%), Positives = 483/688 (70%), Gaps = 28/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M +DY P+GDQP AI L + I+S E +LLG TG+GK+ T A +IE +QRP +V+ Sbjct: 28 FRMVSDYQPAGDQPQAIDDLERRINSGETDVVLLGATGTGKSATTAWLIERVQRPTLVLE 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQFANELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R DC+VVSSVSCIYG+G+ +SY +QL++G ++ LL +LV QY R Sbjct: 148 SATSNLLSRRDCVVVSSVSCIYGLGTPQSYLDRSIQLQVGGETDRDVLLRALVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++E+ P++ E++A R+ MFG++I+ + +PLTG+ +R V+ ++I+ Sbjct: 208 DIAFARGTFRVRGDTVEVIPAY-EELAVRIEMFGDEIDRLYYLHPLTGEVVREVDELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL +L +LEK+ +LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMEKAIRSIEAELDEQLAKLEKQNKLLEAQRLRMRTQYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R G P TL +Y P+D LL +DESHVT+PQ+ GMY GD RK TL E+ Sbjct: 327 GIENYSRHVDDRPAGSAPATLLDYFPDDFLLIIDESHVTVPQVGGMYEGDASRKRTLVEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSALDNRPLTWEEFADRIGQTVYLSATPGPYEMGQAGGEFVEQVIRPTGLVDPEVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI A++ R+L+T LTK+MAEDLT+Y E IRVRY+HSEV TL Sbjct: 447 VKPTEGQIDDLVHEIRERAERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N++ I+PQ +++KI +++D + E Sbjct: 567 NVSGQVHMYADRITDSMRHAIDETNRRREKQIAYNEEKGIDPQPLRKKIADILDRVYSES 626 Query: 741 AATTNISIDAQQLSLSKKK-------GKAHL------------------KSLRKQMHLAA 775 T +++ ++S+ K G A L + L QM AA Sbjct: 627 EDTEEVAVGGSGRNVSRGKKPSGEAVGSAGLLEDRDIKSMPRAELADLVQQLNDQMMSAA 686 Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803 +L FE AAR+RDEI+ LK +G+D Sbjct: 687 RDLQFELAARLRDEIQDLKKE--LRGMD 712 >gi|210608828|ref|ZP_03288024.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787] gi|210152894|gb|EEA83900.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787] Length = 662 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/654 (54%), Positives = 476/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + Q LLG TGSGKTFTMA VI + RP +V+A Sbjct: 4 FELVSEYTPTGDQPQAIDQLVKGFKEGNQCQTLLGATGSGKTFTMANVIAQLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+N+VE F+SYYDYYQPEAYVP +DTYI K+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPNNSVELFMSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E+++ L++ QY R Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVAKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ ED A RV FG+++E I+E LTG+ ++ + I+ Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAVSEDYAIRVEFFGDEVERITEIDVLTGEIKNALKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + L+ A K I+EEL+ R+ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVSKEALDRATKAIEEELEERVRYFKGEDKLLEAQRIAERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PP TL +Y P+D L+ +DESH TIPQI GMY GD RK+TL +Y Sbjct: 304 GIENYSRHLTGLAPGQPPHTLIDYFPDDFLIMIDESHKTIPQIGGMYMGDQSRKSTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E+ + + V+QIIRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLNFEEFESKVNQMLFVSATPGEYE-EKNELLRVDQIIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + +IL+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVGEVNKEIAKKNKILITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T+S++ AI ET RRR+ Q+ +N++H I PQ+VK+ + ++I + + Sbjct: 543 NADGHVIMYADHVTESMEKAIQETERRRKIQMAYNEEHGITPQTVKKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ S+S+K+ + +K + KQM AA LNFE AA +RD++ LK Sbjct: 601 VAAEELRLEKDPESMSEKELEKLIKDVTKQMKKAAAELNFEAAAELRDKLIELK 654 >gi|297198919|ref|ZP_06916316.1| excinuclease ABC, B subunit [Streptomyces sviceus ATCC 29083] gi|197711160|gb|EDY55194.1| excinuclease ABC, B subunit [Streptomyces sviceus ATCC 29083] Length = 711 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/698 (52%), Positives = 484/698 (69%), Gaps = 36/698 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 +++ + + F++ + Y PSGDQPAAIA+L K I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSHIERTVAPFEVVSSYQPSGDQPAAIAELAKRIEAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V L++GD +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + E + ++ SHYV + A+ I++EL RL ELEK+G+LLEAQRL R TYDL Sbjct: 243 ISDDEHLYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC +ENYS + GR PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G +VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGKYELSRGDG-VVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK+ I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNKERGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL---------------------RK 769 +++ I ED T + + K KA + +L R Sbjct: 602 DIVAQIAREDVDTEQLLGSGYRQGKDGKAAKAPVPALGGKAAGTKAARGKAKETVPTDRP 661 Query: 770 QMHLAAD-------------NLNFEEAARIRDEIKRLK 794 LA +L FE AAR+RDE+ +K Sbjct: 662 AAELAGQIEEMTARMRAAAADLQFEIAARLRDEVSEMK 699 >gi|325695926|gb|EGD37817.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK160] Length = 662 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS ++ L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVISLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|238763842|ref|ZP_04624800.1| UvrABC system protein B [Yersinia kristensenii ATCC 33638] gi|238697972|gb|EEP90731.1| UvrABC system protein B [Yersinia kristensenii ATCC 33638] Length = 680 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/662 (55%), Positives = 472/662 (71%), Gaps = 9/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +V+ Sbjct: 14 LFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVL 73 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 74 APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 133 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 134 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLSELQYSR 193 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V + Sbjct: 194 NDQVFQRGTFRVRGEVIDIFPAESDEWAVRVELFDEEVERLSIFDPLTGQLQHEVPRFTV 253 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK EL R L +L+E QR+ QR +DLEM+ G C Sbjct: 254 YPKTHYVTPRERILQAMEDIKVELAERRQVLLANNKLVEEQRITQRTQFDLEMMNELGYC 313 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL E Sbjct: 314 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 373 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ G I+EQ++RPTGL+DP + Sbjct: 374 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLI 433 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ Sbjct: 434 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDIDTV 493 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 494 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 553 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736 RN+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +K+ +++ P Sbjct: 554 RNLNGKAILYGDRITASMEKAIGETQRRRAKQQTYNEERGIIPQGLNKKVGDILQLGQPS 613 Query: 737 LLEDAATTNISI----DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 L + D Q SL+ K ++ L +M+ A NL FE+AA +RD++ + Sbjct: 614 LRGKGKGRGGKVVDTHDYQ--SLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQ 671 Query: 793 LK 794 L+ Sbjct: 672 LR 673 >gi|229164103|ref|ZP_04292039.1| UvrABC system protein B [Bacillus cereus R309803] gi|228619339|gb|EEK76229.1| UvrABC system protein B [Bacillus cereus R309803] Length = 658 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL++RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEVRLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +NK+H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + ++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPTKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|94994564|ref|YP_602662.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750] gi|189038003|sp|Q1J665|UVRB_STRPF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|94548072|gb|ABF38118.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750] Length = 663 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/657 (54%), Positives = 474/657 (72%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RS+ Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRSSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGIFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|331266286|ref|YP_004325916.1| excinuclease ABC subunit B [Streptococcus oralis Uo5] gi|326682958|emb|CBZ00575.1| excinuclease ABC subunit B [Streptococcus oralis Uo5] Length = 662 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FNLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG F V GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGRFSVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIIPQTIKKEIRDLI-AVTKAV 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +D SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660 >gi|145224140|ref|YP_001134818.1| excinuclease ABC subunit B [Mycobacterium gilvum PYR-GCK] gi|145216626|gb|ABP46030.1| Excinuclease ABC subunit B [Mycobacterium gilvum PYR-GCK] Length = 719 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/690 (52%), Positives = 482/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSEYEPAGDQPAAIEELERRIRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+GD V + LL LV QY R Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDSLLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG++IEE+ +PLTG IR V++++I+ Sbjct: 208 DMSFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTGDIIRKVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMAAAISTIEAELEARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG++EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNFELAQTGGEFVEQVIRPTGLVDPQVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVL+GINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N + I+PQ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMKQAIDETERRRAKQIAYNTERGIDPQPLRKKIADILDQVYREA 626 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + I + S+ + G+A +K L QM Sbjct: 627 DDTEAVEIGGSGRNASRGRRAPGEPGRAVSAGVYEGRDTKNMPRAELADLIKDLTAQMMA 686 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AARIRDEI+ LK +G+D Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714 >gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Streptococcus mutans UA159] gi|81844376|sp|Q8CWX7|UVRB_STRMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|24377182|gb|AAN58526.1|AE014922_1 excinuclease ABC (subunit B); helicase subunit of the DNA excision repair complex [Streptococcus mutans UA159] Length = 663 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P Sbjct: 5 KDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ + + +LL+ LV Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPSQEISRDQLLNDLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVLGEVD 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I+ +H++T + A+ I++E+K ++ E EG+L+EAQR+ QR YD+EML Sbjct: 245 HLAIFPATHFMTNDEHMEVAIAKIQKEMKEQVRLFEAEGKLIEAQRIRQRTEYDVEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTSGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+ Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R Q++D+ EIN A +G R +T LTK+MAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPTMGQMDDLLGEINTRADKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN VI+YADT+T+S++ AIDET RRR+ Q+ +N++H I PQ++K+ I ++I Sbjct: 544 GRAARNSQGHVIMYADTVTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ ++D +++K + + +K L+KQM AA+ L+FE AA+IRD + LK+ Sbjct: 604 TKANDSEVAEEAVDYN--AMTKSERQEAIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661 >gi|313833928|gb|EFS71642.1| excinuclease ABC subunit B [Propionibacterium acnes HL056PA1] Length = 701 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++S E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ R Q++D+ EI +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQ +GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQPVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764 ++ + + E A T + + ++L +SK GK + Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AA L FE AAR+RDEI LK Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690 >gi|324992740|gb|EGC24660.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK405] gi|324994614|gb|EGC26527.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK678] gi|327462476|gb|EGF08800.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1] gi|327474331|gb|EGF19737.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK408] gi|327489718|gb|EGF21508.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1058] Length = 662 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTR 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM A L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAVGLLDFELAAQIRDMILEIKA 660 >gi|327470841|gb|EGF16297.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK330] Length = 662 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSRYDPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI A++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q+ +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|238753329|ref|ZP_04614692.1| UvrABC system protein B [Yersinia ruckeri ATCC 29473] gi|238708282|gb|EEQ00637.1| UvrABC system protein B [Yersinia ruckeri ATCC 29473] Length = 672 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/662 (54%), Positives = 470/662 (70%), Gaps = 7/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +++ P+GDQP AI QL +G+ + Q LLGVTGSGKTFT+A VI + RP +++ Sbjct: 4 LFKLHSEFKPAGDQPEAIRQLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMIL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 64 APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 124 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLAELQYAR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTGQ + + + Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQLQQEIARFTV 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK EL R L + +L+E QR+ QR +DLEM+ G C Sbjct: 244 YPKTHYVTPRERILQAMEDIKVELAQRRKVLLENNKLIEEQRIAQRTQFDLEMMNELGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL E Sbjct: 304 SGIENYSRYLSGRGEGEAPPTLFDYLPPDGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ +VEQ++RPTGL+DP + Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSADEVVEQVVRPTGLLDPII 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQ++D+ EI A R+L+T LTKRMAEDLT+YL E RVRY+HS++ T+ Sbjct: 424 EVRPVATQIDDLLSEIRQRAAINERVLVTTLTKRMAEDLTDYLVEHGERVRYLHSDIDTV 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736 RN+N K ILY D IT S++ AI ET RRREKQ HN+ I PQ + +K+ +++ P Sbjct: 544 RNLNGKAILYGDRITASMEKAISETERRREKQQAHNEALGIVPQGLNKKVGDILQLGQPS 603 Query: 737 LLEDA----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 L A A +L+ K + L QM+ A NL FE+AA +RD++ + Sbjct: 604 LRGKARGKHGKAAAESAAAYDALTPKALDRKISELEAQMYTHAQNLEFEQAAELRDQVHK 663 Query: 793 LK 794 L+ Sbjct: 664 LR 665 >gi|327460184|gb|EGF06521.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1057] Length = 662 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S+Q AIDET RRR Q +N++H I PQ++K++I ++I + Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQTAYNEEHGIVPQTIKKEIRDLIS---VTK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + + SL+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|227529561|ref|ZP_03959610.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC 49540] gi|227350520|gb|EEJ40811.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC 49540] Length = 682 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/663 (52%), Positives = 469/663 (70%), Gaps = 13/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L GI EK Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 10 FELVSDYKPTGDQPEAIKELTTGIEKGEKAQILLGATGTGKTFTISNVIAKVNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID +RH Sbjct: 70 HNKTLAGQLYSEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDELRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER+D IVV+SVS I+G+G Y +V L++G +E+ LL LV Q++R Sbjct: 130 SATSSLMERDDVIVVASVSSIFGLGDPSEYHNHVVSLRVGQEIERDRLLRELVNIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ED A R+ FG++I+ I E LTG+ I + E I I+ Sbjct: 190 DIDFQRGRFRVHGDVVEVFPASREDKALRIEFFGDEIDRIREVDALTGEVIGDREHISIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + EG+LLEA+R++QR TYD+EML G C Sbjct: 250 PATHFLTSEEIMDRALPQIENDMKKQVKKFTDEGKLLEAERIQQRTTYDIEMLREMGYCN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+ Q +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLAEFEKHVNQVVYMSATPGPYEMAQTDH-VVQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADT+T S+Q AIDET RRRE Q+ +N+KH I P+++ + I E I Sbjct: 549 NANGSVIMYADTVTDSMQKAIDETKRRREIQIAYNRKHGITPKTIIKPIQETISST---- 604 Query: 741 AATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 T +I +A L++ ++ L +QM AA L+FE+AA +RD I Sbjct: 605 TKTEDIGKEADSTEFTTKDFAKLNRDDQTKMVEELTEQMRTAAKRLDFEQAATLRDTIME 664 Query: 793 LKS 795 LK+ Sbjct: 665 LKA 667 >gi|291520741|emb|CBK79034.1| excinuclease ABC, B subunit [Coprococcus catus GD/7] Length = 663 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/654 (54%), Positives = 466/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI + +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 64 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+VSSVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALSERRDVIIVSSVSCIYGLGSPIDYQEMVISLRPGMLKDRDEVIRKLIDIQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP++ D A RV FG++I+ I+EF LTG +E + I+ Sbjct: 184 DMDFKRGTFRVRGDVVEIFPANATDTAVRVEFFGDEIDRITEFDALTGNVKARLEHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+EELK R+ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVAPEKMEKAISAIEEELKERVEWFKHEDKLLEAQRIAERTKFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PGEPP TL +Y P+D L+ VDESH+TIPQ+ GMY GD RK TL +Y Sbjct: 304 GIENYSRHLSGLKPGEPPHTLLDYFPDDFLMIVDESHITIPQVRGMYAGDQSRKTTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATP +E E + + EQ+IRPTGL+DP + Sbjct: 364 GFRLPSAKDNRPLNFDEFESHISQMLFVSATPNVYEGEH-ELLRAEQVIRPTGLLDPEIS 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + G ++L+T LTKRMAEDLT+Y+ E IRVRY+HS++ TLE Sbjct: 423 VRPVEGQIDDLISEVNKEIEHGHKVLITTLTKRMAEDLTDYMKELGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+R+LRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIVRNLRLNVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+ AI ET RRR Q +N+ H I P+++++ + ++I D Sbjct: 543 NTEGHVIMYADRITDSMDKAITETNRRRAIQQAYNEAHGITPKTIQKAVRDLISISEAAD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N DA+ S+S K+ A ++ L KQMH AA L+FE+AA +RD+I LK Sbjct: 603 KSEDNFVKDAE--SMSYKELNAAIRKLTKQMHSAAAELDFEKAAMLRDKIMELK 654 >gi|331268610|ref|YP_004395102.1| exconuclease ABC subunit B [Clostridium botulinum BKT015925] gi|329125160|gb|AEB75105.1| exconuclease ABC, B subunit [Clostridium botulinum BKT015925] Length = 663 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/654 (54%), Positives = 471/654 (72%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI + KGI +K Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 11 FKIHSVYKPTGDQPKAIKSISKGILEGDKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 71 HNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+G+ E Y ++ V L+ G ++ E++ LV QY+R Sbjct: 131 SATSALLERKDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIIRQLVDIQYERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFR GD ++IFP+ ++ RV FG++I++I EF LTG + + I+ Sbjct: 191 EINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNILNTRKHASIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + +LLE QR++QR +D+EM+ G C Sbjct: 251 PASHFATSKEKLEIAIKKIEEELEERVKELIAQDKLLEVQRVKQRTNFDIEMMREVGYCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GRNPG PP TL +Y P+D LLF+DESHVT+PQI MY GD RK L EY Sbjct: 311 GIENYSRVLDGRNPGTPPKTLMDYFPDDFLLFIDESHVTLPQIKAMYGGDRSRKDNLVEY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F+E+ T+ VSATP +E E I EQIIRPTGL+DP + Sbjct: 371 GFRLPCAYDNRPLKFQEFEGKLNQTVFVSATPSQYEFEHSTN-IAEQIIRPTGLLDPEII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y IN +G R+L+T LTK+M+EDLT+YL E ++ Y+HS + T++ Sbjct: 430 VKPIKGQIDDLYSNINETINRGFRVLVTTLTKKMSEDLTDYLKEMGVKTEYLHSSIDTIK 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+T+LIQTIGRAAR Sbjct: 490 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETALIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YADTITK++ AI ET RRRE Q+++N++H I P +V + I +VI + ED Sbjct: 550 NSESKVIMYADTITKAMDKAISETNRRREIQMQYNEEHGIVPTTVLKDIRDVIQTKVSED 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++SK++ + + K+M A L FE+AA IRDEI++LK Sbjct: 610 KEEYIVN---NKNTMSKEEIEKLINKYEKEMKKVAKELQFEKAAEIRDEIQKLK 660 >gi|225870778|ref|YP_002746725.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. equi 4047] gi|254764909|sp|C0MBD7|UVRB_STRE4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|225700182|emb|CAW94344.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. equi 4047] Length = 663 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 +D F++ + Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P Sbjct: 5 RDFKAFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVVAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ + + + Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDKARKQ 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ IVEQIIRPTGL+ Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R + Q++D+ EINL ++G R +T LTK+MAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN + VI+YAD +T S+Q AIDET RRR Q+ +N++H I PQ++K+ I ++I Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +A T + + ++ S++ + +K L+K M AA+ L+FE AA++RD I LK+ Sbjct: 604 SRAVEAKATEAETNYESMTRSER--QEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661 >gi|312198693|ref|YP_004018754.1| excinuclease ABC, B subunit [Frankia sp. EuI1c] gi|311230029|gb|ADP82884.1| excinuclease ABC, B subunit [Frankia sp. EuI1c] Length = 700 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/689 (52%), Positives = 486/689 (70%), Gaps = 29/689 (4%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 N+ + T F++ +DY PSGDQPAAI +L + I + EK +LLG TG+GK+ T A +IE + Sbjct: 2 NNERSATPFKVVSDYQPSGDQPAAIKELARRIRAGEKDLVLLGATGTGKSATTAWLIEEL 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 QRP +VMAPNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN Sbjct: 62 QRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSIN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 E+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V++ +G+ +++ LL L Sbjct: 122 EEVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQEYIDRMVKISVGEEIDRDLLLRRL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V QY R D+ RGTFRV GD++E+FP + E++A R+ +FG++IE IS +PLTG+ +R Sbjct: 182 VDVQYTRNDLAFDRGTFRVRGDTVEVFPVY-EELAVRIELFGDEIERISYLHPLTGEIVR 240 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V+ + I+ SHYV + A+ I+EEL RL +LE +G+LLEAQRL R TYD+EM Sbjct: 241 EVDQVFIFPASHYVAGPERMERAITGIEEELATRLEQLEGQGKLLEAQRLRMRTTYDIEM 300 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 + G C IENYSR++ GR G P TL +Y P+D L+ +DESH T+PQI GMY GD Sbjct: 301 MRQVGFCSGIENYSRHIDGRAAGTAPHTLLDYFPDDFLMVIDESHNTVPQIGGMYEGDMS 360 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L ++GFRLPS DNRPLR+EE+ T+ +SATPG +EL + G IVEQIIRPT Sbjct: 361 RKRNLVDHGFRLPSATDNRPLRWEEFLERVGQTVYLSATPGPYELGKADG-IVEQIIRPT 419 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP + ++ + Q++D+ EI L A++ R+L+T LTK+M+EDLT+YL E IRVRY+ Sbjct: 420 GLIDPEIVLKPTKGQIDDLIHEIRLRAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYL 479 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSEV TL R+E++ +LR G +DVLVGINLLREGLD+PE LV+ILDADKEGFLRS+ SLI Sbjct: 480 HSEVDTLRRVELLTELRRGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSLI 539 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARNV +V +YAD IT S++ AIDET RRR Q+ +N+KH ++PQ +++K+M++ Sbjct: 540 QTIGRAARNVAGQVHMYADKITPSMRTAIDETNRRRALQVAYNEKHGLDPQPLRKKVMDI 599 Query: 733 IDPILLEDA--------------------------ATTNISIDAQQLSLSKKKGKAHL-K 765 +D ++ E+A + A +L+ + A+L + Sbjct: 600 LDDMVRENADGEMYGGGRAQSRGKAPVPGMKSRGGKQDAVGRYAAELAGMPRHDLANLIR 659 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L QMH AA L FE AAR+RDEI LK Sbjct: 660 QLDDQMHEAAKELQFELAARLRDEIAELK 688 >gi|320538870|ref|ZP_08038546.1| excinulease of nucleotide excision repair, DNA damage recognition component [Serratia symbiotica str. Tucson] gi|320031030|gb|EFW13033.1| excinulease of nucleotide excision repair, DNA damage recognition component [Serratia symbiotica str. Tucson] Length = 671 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/662 (55%), Positives = 466/662 (70%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ D+ P+GDQP AI +L G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHADFKPAGDQPEAIRKLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKGFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLNQGMIIDQRAILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ D+A RV +F +++E +S F PLTGQ + V IY Sbjct: 185 DQAFQRATFRVRGEVIDIFPAESGDLALRVELFDDEVERLSLFDPLTGQIEQVVPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + AMK IK EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKSHYVTPRTRILQAMKEIKAELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ G PPPTLF+Y+P D LL VDESHVTIPQI GM++GD RK TL EY Sbjct: 305 GIENYSRYLSGRSAGAPPPTLFDYLPTDGLLVVDESHVTIPQIGGMFKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P T+ VSATPG +ELE+ G +++Q++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTLYVSATPGKYELEKSGGDLIDQVVRPTGLLDPEVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLT+YL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRVALNERVLVTTLTKRMAEDLTDYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILY D IT S+ AI ET RRR KQ +N ++ I PQ + +KI +++ L + Sbjct: 545 NLNGKAILYGDRITDSMAKAIGETERRRIKQQAYNAENGIVPQGLNKKISDILQ--LGQH 602 Query: 741 AATTNISID--------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + D AQ SL+ + ++ L QM+ A NL FE+A +RDEI Sbjct: 603 PGKRHKGKDKSQASENAAQYQSLTPAALEHKIRELEAQMYSHAQNLEFEQAGALRDEIHH 662 Query: 793 LK 794 L+ Sbjct: 663 LR 664 >gi|290580728|ref|YP_003485120.1| excinuclease ABC subunit B [Streptococcus mutans NN2025] gi|254997627|dbj|BAH88228.1| excinuclease ABC subunit B [Streptococcus mutans NN2025] Length = 663 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/660 (53%), Positives = 477/660 (72%), Gaps = 3/660 (0%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F + + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI+ + +P Sbjct: 5 KDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ + + +LL+ LV Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPSQEISRDQLLNDLVDI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Q++R DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + V+ Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVLGEVD 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I+ +H++T + A+ I++E++ ++ E EG+L+EAQR+ QR YD+EML Sbjct: 245 HLAIFPATHFMTNDEHMEVAIAKIQKEMEEQVRLFEAEGKLIEAQRIRQRTEYDVEMLRE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK Sbjct: 305 MGYTSGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L YGFRLPS +DNRPLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+ Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP VE+R Q++D+ EIN A +G RI +T LTK+MAEDLT+YL E ++V+YMHS+ Sbjct: 424 DPEVEVRPTMGQMDDLLGEINSRADKGERIFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTI Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN VI+YADT+T+S++ AIDET RRR+ Q+ +N++H I PQ++K+ I ++I Sbjct: 544 GRAARNSQGHVIMYADTVTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAI 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D+ ++D +++K + + +K L+KQM AA+ L+FE AA+IRD + LK+ Sbjct: 604 TKANDSEVAEEAVDYN--AMTKSERQEAIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661 >gi|309390141|gb|ADO78021.1| Excinuclease ABC subunit B [Halanaerobium praevalens DSM 2228] Length = 673 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/667 (53%), Positives = 477/667 (71%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP AI +L +GI + + Q LLG TG+GKTFTMAK++E + +P +V+A Sbjct: 6 FKLKAPFEPKGDQPEAIEKLAQGIKNGYQHQTLLGATGTGKTFTMAKLVEEVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++S+N++I+++R Sbjct: 66 HNKTLAAQLTSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASVNDEIEKLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D ++V+SVSCIYG+GS + Y + + LK+G +++K++ SL QY R Sbjct: 126 SATTSLFERRDVLIVASVSCIYGLGSPDDYLNLSLDLKVGKIMDRKKITRSLTFMQYSRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD ++IFP++ D+A RV +FG++I+ I+ +TG+ +E + IY Sbjct: 186 DMDTSRGHFRVKGDVVDIFPAY-RDIAIRVELFGDEIDRITRINTVTGEVQAEIEEMTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VTP + A+K I EL+ L +L E RL+EAQRLEQR YDLEMLE G C Sbjct: 245 PASHFVTPEDKVERAIKTITAELEEHLKDLRAENRLVEAQRLEQRTRYDLEMLEQMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L GR G P L +Y P+D ++ +DESH+TIPQI GM+ GD RK L EY Sbjct: 305 GIENYARHLAGRETGSRPMALLDYFPDDFMVIIDESHMTIPQIGGMFAGDRSRKEKLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + P + VSATPG +E + Q I VEQIIRPTGLVDP ++ Sbjct: 365 GFRLPSALDNRPLNFEEFEQVVPQAVYVSATPGPYERKHSQQI-VEQIIRPTGLVDPEID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR ++Q++D+ +EI R+L+T LTK+M+EDLTEYL E I+VRY+HS++ T+E Sbjct: 424 IRPTKSQIDDLLEEIRQVVASKERVLVTTLTKKMSEDLTEYLAEAGIKVRYLHSDIDTIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLD+PE VAILDADKEGFLRS+ +LIQTIGRAAR Sbjct: 484 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSRVAILDADKEGFLRSQRALIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 NV KVI+YAD IT S+Q AI ET RRR+ Q++HN +NI P+++ + + +V+ P+ + Sbjct: 544 NVEGKVIMYADKITDSMQTAISETERRRKIQIQHNLDNNITPETIIKPVRDVVKPVDMVV 603 Query: 739 -------EDAATTNISID--AQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRD 788 D + +N D +Q +K HL L ++M AADNL FE AA+IRD Sbjct: 604 SEDQSRYYDKSQSNTDPDDHSQNYDQMNRKEIQHLILDLEEEMETAADNLEFEIAAQIRD 663 Query: 789 EIKRLKS 795 EI+ L++ Sbjct: 664 EIEELEA 670 >gi|303231825|ref|ZP_07318539.1| excinuclease ABC, B subunit [Veillonella atypica ACS-049-V-Sch6] gi|302513503|gb|EFL55531.1| excinuclease ABC, B subunit [Veillonella atypica ACS-049-V-Sch6] Length = 726 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/681 (52%), Positives = 484/681 (71%), Gaps = 28/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+IEIFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A++ I+ EL +L +L+ E RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMKIAVERIEAELDEQLAKLKAEDRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVTIPQ+ MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E + + EQIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEME-VETNVAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q A+DET RRR Q +N +H+I P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAMDETDRRRAVQEAYNIEHHITPKSVSKDVKELIELTKVEE 612 Query: 741 AATTNI--------------------------SIDAQQLS-LSKKKGKAHLKSLRKQMHL 773 T+ DA +++ ++ ++ ++ L +QM Sbjct: 613 DMVTDGKGLSPKKGKKKSSAAGMDHGHEPYAQDADATKVAEITAEELYNKIEELDRQMKA 672 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE+AA++RD++ L+ Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693 >gi|254820352|ref|ZP_05225353.1| excinuclease ABC subunit B [Mycobacterium intracellulare ATCC 13950] Length = 725 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/692 (52%), Positives = 478/692 (69%), Gaps = 32/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 32 FEVVSPHDPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 92 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+L++G+ V + LL LV QY R Sbjct: 152 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGNEVPRDGLLRLLVDVQYTRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG IR V++++I+ Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVIRQVDSLRIF 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 271 PATHYVAGPERMAHAISTIEEELAARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R PG PP TL +Y PED L+ +DESHVT+PQI GMY GD RK L EY Sbjct: 331 GIENYSRHIDARGPGSPPATLLDYFPEDFLMVIDESHVTVPQIGGMYEGDMSRKRNLVEY 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 391 GFRLPSACDNRPLTWEEFADRVGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 451 VKPTKGQIDDLIGEIRKRTDADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YADTIT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 571 NVSGEVHMYADTITDSMKEAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 630 Query: 740 ---DAATTNISIDAQQLSLSKKK----GKA---------------------HLKSLRKQM 771 +A+ I + S ++ G+A +K L QM Sbjct: 631 SDTEASVVEIGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTTSMPRAELADLIKDLTAQM 690 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 691 MAAARDLQFELAARFRDEIADLKKE--LRGMD 720 >gi|302868823|ref|YP_003837460.1| excinuclease ABC subunit B [Micromonospora aurantiaca ATCC 27029] gi|315504707|ref|YP_004083594.1| excinuclease abc, b subunit [Micromonospora sp. L5] gi|302571682|gb|ADL47884.1| excinuclease ABC, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315411326|gb|ADU09443.1| excinuclease ABC, B subunit [Micromonospora sp. L5] Length = 701 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/688 (52%), Positives = 480/688 (69%), Gaps = 28/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P+GDQPAAI +L + + ++ +LLG TG+GK+ T A ++E +QRP +V+A Sbjct: 12 FQVVSEFQPAGDQPAAIDELERRVRRGDRNTVLLGATGTGKSATTAWLVERLQRPTLVLA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL EF PHNAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH Sbjct: 72 PNKTLAAQLAKEFGELMPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV++VS IYG+G+ E Y V++K+G +++ +LL LV QY R Sbjct: 132 SATMSLLTRRDVIVVATVSAIYGLGTPEEYLDRAVRVKVGQELDRDQLLRRLVDIQYARN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ +FG++IE++ PLTG +R V+++ I+ Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEIEKLYYLNPLTGDVVREVDSLMIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY + A++ I+ EL RL ELE++G+LLEAQRL R TYD+EM+ G C Sbjct: 251 PATHYAAGPERMERAIRDIEAELGERLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PG PP L +Y P+D L VDESHVTIPQI GMY GD RK L ++ Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQIGGMYEGDASRKRMLIDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRF+E+ + +SATPG WELEQ QG VEQ+IRPTGL+DP V Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGPWELEQAQGEFVEQVIRPTGLIDPEVV 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDL++YL E IRVRY+HSEV TL Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +V +YAD IT S+ AIDET RRR KQ+ HN+ + I P+ +++KI +++D I Sbjct: 551 NVSGQVHMYADKITPSMADAIDETNRRRAKQIAHNEANGIKPEPLRKKIHDILDDIYREA 610 Query: 739 EDAATTNISIDAQQLSLSK--------KKGKAH---------------LKSLRKQMHLAA 775 ED +N+ +QLS K ++G A ++ L QM AA Sbjct: 611 EDTENSNVGGAVRQLSRGKAPVKETRSRRGAAATPSREGMARADLANLIQELNDQMLAAA 670 Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803 L FE AARIRDE+ LK +G+D Sbjct: 671 RELQFELAARIRDEVADLKKE--LRGMD 696 >gi|300214835|gb|ADJ79251.1| UvrABC system protein B [Lactobacillus salivarius CECT 5713] Length = 666 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +GI EK Q+L+G TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + + L++G +E+ +LL+ L+ Q++R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ I + E I I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L TA++ I++EL+ R EL+ EG+LLEAQRL+QR TYD+EML+ G C Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL EE+ I +SATPG +E E+ +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+GKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T S++ AI ET RRR Q ++NK HNI P+++ + I I + Sbjct: 549 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + TNIS +SKK+ + +L +QM AA L+FEEAA +RD + LK+ Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKA 663 >gi|227541521|ref|ZP_03971570.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum ATCC 51866] gi|227182677|gb|EEI63649.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum ATCC 51866] Length = 680 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/661 (53%), Positives = 487/661 (73%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L + I EK +L+G TG+GK+ T A +IE +QRP +VMA Sbjct: 11 FEVISEYEPAGDQPKAIKELTERIQRGEKDIVLMGATGTGKSATAAWLIEQVQRPTLVMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 71 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY +++++G+ +++ L LV QY+R Sbjct: 131 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLKIEVGEEIDRDRFLRLLVDIQYERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FRV GD+++I P++ E+VA RV FG++++++ +PLTG+ IRNV+ ++I+ Sbjct: 191 DYDLKRGAFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDQLYYIHPLTGEIIRNVDVLRIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+ + A++ I+EEL+ R+ E G+LLEAQRL R YDLEM+E G C Sbjct: 250 PATHYIASEGRVEKAIEQIREELEERITSFENRGKLLEAQRLRMRTEYDLEMIEEMGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PPPTL +Y PED L +DESHVT+PQI GMY GD RK L E+ Sbjct: 310 GIENYSRHMDGREAGDPPPTLIDYFPEDFLTIIDESHVTVPQIGGMYEGDASRKRNLVEF 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ + T+ +SATPG +EL G VEQ+IRPTGLVDP + Sbjct: 370 GFRLPSALDNRPLTWEEFEERKGQTVYMSATPGDYELAAAGGEFVEQVIRPTGLVDPKIV 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + A++ R+L+T LTK+MAEDLTEYL E +RVRYMHS+V TL+ Sbjct: 430 VKPTKGQIDDLIHEIRVRAEKKERVLVTTLTKKMAEDLTEYLQENGVRVRYMHSDVDTLQ 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRKLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTKSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD+IT S+Q AIDET RRRE Q+ +NK+H I+PQ +++KI +++D ++ ED Sbjct: 550 NVSGEVHMYADSITDSMQQAIDETERRREMQIAYNKEHGIDPQPLRKKIADILD-LVYED 608 Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A A ++ D ++++ + + +K LR QM AA LNFE AAR+RDEI L Sbjct: 609 AEEGETPSADAVVAKDYDVSTMAQDEVEKLIKDLRAQMGAAARELNFELAARLRDEIVSL 668 Query: 794 K 794 + Sbjct: 669 E 669 >gi|210635514|ref|ZP_03298595.1| hypothetical protein COLSTE_02534 [Collinsella stercoris DSM 13279] gi|210158369|gb|EEA89340.1| hypothetical protein COLSTE_02534 [Collinsella stercoris DSM 13279] Length = 746 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/688 (52%), Positives = 480/688 (69%), Gaps = 36/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AIA L+KG+ ++ Q+LLGVTGSGKTFTMAK IEA+ +P +VMA Sbjct: 25 FEVVSPFQPSGDQPEAIASLVKGVEDGDRYQVLLGVTGSGKTFTMAKTIEALGKPTLVMA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SE K FFPHNAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+++ +RH Sbjct: 85 PNKTLAAQLASELKEFFPHNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEVEMLRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D IVV+SVSCIYGIGS E Y+ + + +E+ E + +L+ QY R Sbjct: 145 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKVPLERDEFIHALIDIQYDRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD ++++P + E R FG+++E I+E +TG+ +R + I ++ Sbjct: 205 DYDLARGTFRVRGDVVDVYPPYAEH-PLRFEFFGDEVELIAEIDEVTGEILREYDAIPVW 263 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT +P + A+K I+EEL++R+ EL+ +LLEAQRLEQR +YDLEMLET G Sbjct: 264 PASHYVTEKPKVTAALKSIEEELEVRVGELKANDKLLEAQRLEQRTSYDLEMLETMGFTT 323 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D L +DESHVT+PQI GM+ GD RK TL E+ Sbjct: 324 GIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKVTLVEH 383 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ P I VSATPG +EL Q VEQIIRPTGL+DP ++ Sbjct: 384 GFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYELRVSQN-NVEQIIRPTGLLDPKID 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ DEIN + R+L+T LTKRMAEDLT++L + IRV YMHS+ T++ Sbjct: 443 VRPVHGQIDDLIDEINARVAKHERVLVTTLTKRMAEDLTDHLLDAGIRVNYMHSDTATMD 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R LR GK DVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 503 RVEILRSLRQGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ AIDET RRR Q++ N++H I P++V++ I + I + E Sbjct: 563 NAEGEVIMYADTVTDSMREAIDETNRRRAIQMQFNEEHGIKPKTVRKAISD-ISSFIAEA 621 Query: 741 AATTN-----------------------------ISID---AQQLS-LSKKKGKAHLKSL 767 T +S+ A++LS L +++ + ++ Sbjct: 622 EETVGKKDRSRGDTLGHGAFFSPAADGDAGDGGAVSMGERLAEELSELPQEELARVIATM 681 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795 M A++ ++FEEAAR+RD + LK+ Sbjct: 682 EDDMRAASEAMDFEEAARLRDAVVSLKA 709 >gi|152977385|ref|YP_001376902.1| excinuclease ABC subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026137|gb|ABS23907.1| excinuclease ABC, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 658 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/655 (55%), Positives = 481/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI QL+KGI + ++ Q+LLG TG+GKTFT++ VI+ +++P +VMA Sbjct: 5 FEIVSEYSPQGDQPKAIEQLVKGIQNGKRHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVDALTGEVLAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL ++G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNEQGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHVT+PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEEKANQIIYVSATPGPYELEHAPE-VVEQIIRPTGLLDPKIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLLGEIQERIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD ITKS+Q+AIDET RRREKQ +NK+H I P+++++++ +VI + Sbjct: 544 NENGHVIMYADHITKSMQIAIDETKRRREKQEAYNKEHGITPKTIQKEVRDVIRATVA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + ++KK+ + + + +M AA L+FE AA +RD I LK+ Sbjct: 602 AEETEVYEATAMKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLILELKA 656 >gi|284047894|ref|YP_003398233.1| excinuclease ABC, B subunit [Acidaminococcus fermentans DSM 20731] gi|283952115|gb|ADB46918.1| excinuclease ABC, B subunit [Acidaminococcus fermentans DSM 20731] Length = 664 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 469/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI L +G+ Q+LLG TG+GKT+T+A+VI+ +Q+P +V+A Sbjct: 3 FEIHAPFAPAGDQPEAIDALARGVEEGMHTQVLLGATGTGKTYTIAQVIQKVQKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+SS+N++ID++RH Sbjct: 63 HNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIPATDTYIEKDSSMNDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVV+SVSCIYG+G + Y ++ L+IG +VE+ +L LVK +Y R Sbjct: 123 SATSALMERRDVIVVASVSCIYGLGGPKDYYDSVLSLRIGQTVERDAILEKLVKIRYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD IE+ P+ + A R+ +FG++++ + E LTGQ + + I+ Sbjct: 183 DLSLERGKFRVRGDVIEVVPASYGEKAIRIELFGDEVDSLEEIDVLTGQVVDKRTHVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A K I+ EL RL L+ E +LLEAQRLEQR YDLEM++ G C Sbjct: 243 PASHYVTSDENLERARKDIRRELNERLKVLKGENKLLEAQRLEQRTNYDLEMMQELGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL Y P+D L +DESHVT+PQ+ MY GD RK L +Y Sbjct: 303 GIENYSRHLTGRKPGEPPFTLVNYFPKDFLTVIDESHVTLPQLRAMYAGDRARKEQLVKY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ R I VSATPGS+E+E +VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSAIDNRPLTFDEFQAQRGQIIYVSATPGSYEMETTDQ-VVEQIIRPTGLLDPKIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI+ Q R+L+T LTK+MAEDLTEYL +RVRY+HS++ T+E Sbjct: 422 VRPIKGQIDDLLGEIHKVTAQKERVLVTTLTKKMAEDLTEYLTTAGVRVRYLHSDIATIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR GKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 482 RAEIIHDLRAGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YADTIT S++ AI ET RRREKQ NK H I P+++++K++++I +E+ Sbjct: 542 NAHGRVIMYADTITGSMERAISETARRREKQEAFNKVHGIVPRTIQKKVVDLIKLTKVEE 601 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T A+ + L ++ ++ + K+M AA L+FE AA RD++ LK Sbjct: 602 DNTAAKGYTAKTVKKLKPRELDKQIRLMEKKMKEAAKQLDFELAAEYRDQLILLKG 657 >gi|51246617|ref|YP_066501.1| excinuclease ABC subunit B [Desulfotalea psychrophila LSv54] gi|50877654|emb|CAG37494.1| probable excinuclease ABC, subunit B [Desulfotalea psychrophila LSv54] Length = 706 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/683 (53%), Positives = 478/683 (69%), Gaps = 20/683 (2%) Query: 127 RSWSINNHSKDI---TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 R W + N I T FQ+ + Y PSGDQP AI +L+ G+ + Q+LLGVTGSGKTF Sbjct: 22 RRWIVLNSIFGIFMDTPFQLVSPYTPSGDQPKAIEELVAGVRRGDCDQVLLGVTGSGKTF 81 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 T+A V+ +QRPA+V+APNK LA QL++EFK FPHNAVEYFVSYYDYYQPEAY+P +D+ Sbjct: 82 TLANVVAELQRPALVIAPNKTLAGQLFAEFKELFPHNAVEYFVSYYDYYQPEAYIPASDS 141 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 YIEK+SSIN+ ID+MRHSATRSLL R D ++V+SVSCIYG+GS + Y M + L+ Sbjct: 142 YIEKDSSINDAIDKMRHSATRSLLTRRDVLIVASVSCIYGLGSPDEYKNMHLLLERDKDY 201 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +++ LV QY+R D RGTFRV GD ++IFP H E+ A R+ FG+ +E+IS Sbjct: 202 AMEKIQRRLVFMQYERNDTSFHRGTFRVRGDVVDIFPVHEEERAIRLEFFGDTLEKISLI 261 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PL G+ + + I+ SH+VT + L A + IK+ELK RL ++E RL+EAQR+E Sbjct: 262 DPLRGKTLEELAEYTIFPGSHFVTSKDRLQVATEEIKKELKERLDYFQREHRLVEAQRIE 321 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 QR +DLEM+ G C IENYSR+LTG+ G PPP L +Y P+D LL +DESH+ I Q+ Sbjct: 322 QRTMFDLEMMTELGYCTGIENYSRHLTGKEAGAPPPNLLDYFPDDFLLLIDESHIGIGQL 381 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 +GMY GD RK TL +YGFRLPS +DNRPLRF+E+ I VSATPG +ELEQ G+ Sbjct: 382 NGMYNGDRSRKETLVKYGFRLPSALDNRPLRFQEFTERIHQAIYVSATPGPYELEQSHGV 441 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 +VEQ+IRPTGL+DP +E+R A +QV+D+ +EI L ++ +L+T LTKRMAEDLTEY Sbjct: 442 VVEQVIRPTGLLDPKIEVRPASSQVDDLLEEIRLRTERDEAVLVTTLTKRMAEDLTEYYE 501 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 + I+VRY+HS+VKTL+R+E+I+ LR G+++VLVGINLLREGLDIPE LVAILDADKEG Sbjct: 502 QLGIKVRYLHSDVKTLQRMELIQSLRKGEYNVLVGINLLREGLDIPEVSLVAILDADKEG 561 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLRS+ SL+QT GRAARNVN VI+YAD IT S+ I ET RRR+ Q +N++H I PQ Sbjct: 562 FLRSERSLVQTCGRAARNVNGTVIMYADRITGSMAYTIAETERRRKIQEAYNREHGIVPQ 621 Query: 724 SVKEKIMEVIDPILLE--------DAATTNISID----AQQLSLSKKKGKAHLKSLRKQM 771 ++ + + + L + D T ++ D A L K+ GK L K+M Sbjct: 622 TIISPVKDTLQRHLRQTGYQADNYDGKTAKMAEDLPVYASMQELEKEIGK-----LEKEM 676 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 AA +L FEEAA +RD+IK L+ Sbjct: 677 QQAAADLAFEEAAALRDQIKALR 699 >gi|217967273|ref|YP_002352779.1| excinuclease ABC, B subunit [Dictyoglomus turgidum DSM 6724] gi|217336372|gb|ACK42165.1| excinuclease ABC, B subunit [Dictyoglomus turgidum DSM 6724] Length = 662 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/655 (54%), Positives = 469/655 (71%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P GDQP AI +L +G+ + Q L+GVTGSGKTFTMA +I +Q+P +V+A Sbjct: 4 FILVSEFKPCGDQPQAIEKLTEGVKRGLRYQTLIGVTGSGKTFTMANIIANVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++IDR+RH Sbjct: 64 PNKTLAAQLYSEFKEFFPYNAVEYFVSYYDYYQPEAYIPQTDTYIEKDADINDRIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL R D IVV+SVSCIYG+GS Y++MI+++K G+ + ++ LL L+K QY+R Sbjct: 124 STTSSLLSRRDVIVVASVSCIYGLGSPMDYAEMILRVKRGEDLPRETLLRKLIKLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +E+FP E A RV +G++IE ISE PL G++I + + IY Sbjct: 184 DYEFTRGKFRVRGDIVEVFPIGGE-TAIRVEYWGDNIERISEIDPLNGKRIIDFNEVFIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+ P + A++ IK EL RL EL +G+ LEA+RLE R YD+E+L G C+ Sbjct: 243 PATHYIAPTEKMERAIESIKRELTERLEELRAQGKFLEAKRLEARTLYDIELLREVGYCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y P+D L+F+DESH+TIPQ+ MY GD RK L EY Sbjct: 303 GIENYSRHFDGRKPGEPPYTLLDYFPDDFLVFIDESHLTIPQLRAMYHGDKSRKDNLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ P I VSATP +EL + +VEQ+IRPTGL+DP +E Sbjct: 363 GFRLPSAYDNRPLTFEEFWERVPQVIFVSATPAEFELSVSEQ-VVEQLIRPTGLLDPEIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + Q++ + EI +G R+L+T LTKR AEDL EYL I V Y+HSE++TLE Sbjct: 422 VHPTEGQIDHLISEIKKVVARGERVLVTTLTKRTAEDLAEYLSNLGINVTYLHSEIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R I+++LRLGKFDVLVGINLLREGLD+PE LVAILDAD+EGFLRS+ SLIQ +GRAAR Sbjct: 482 RTGILQNLRLGKFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSERSLIQVMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KVI+YAD IT+S++ AI ET RRR+ Q+E+NK H I P+S+K+ + EV D +E Sbjct: 542 NVNGKVIMYADVITESMRKAIQETERRRKIQMEYNKAHGIIPKSIKKPVKEVFD--FVEA 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A A LS + + ++ L K+M+ AA L+FE+AA +RD+IK LK+ Sbjct: 600 VAEKKADYRAISKKLSIDEIEEVIRQLEKEMYEAAAELDFEKAAYLRDQIKELKN 654 >gi|227891173|ref|ZP_04008978.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741] gi|227867047|gb|EEJ74468.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741] Length = 671 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +GI EK Q+L+G TG+GKTFT++ VI+ + +P +V+A Sbjct: 15 FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 75 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + + L++G +E+ +LL+ L+ Q++R Sbjct: 135 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ I + E I I+ Sbjct: 195 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L TA++ I++EL+ R EL+ EG+LLEAQRL+QR TYD+EML+ G C Sbjct: 255 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 315 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL EE+ I +SATPG +E E+ +V+QIIRPTGL+DP +E Sbjct: 375 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 434 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+GKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 494 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T S++ AI ET RRR Q ++NK HNI P+++ + I I + Sbjct: 554 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + TNIS +SKK+ + +L +QM AA L+FEEAA +RD + LK+ Sbjct: 614 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKA 668 >gi|323144279|ref|ZP_08078901.1| excinuclease ABC, B subunit [Succinatimonas hippei YIT 12066] gi|322415949|gb|EFY06661.1| excinuclease ABC, B subunit [Succinatimonas hippei YIT 12066] Length = 680 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/665 (53%), Positives = 468/665 (70%), Gaps = 12/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + +GDQ AI L+KGI +K Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 7 FELVSPFKAAGDQVEAIDALVKGIQKGDKAQTLLGVTGSGKTFTMANVIAKLNRPTMILS 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP NAVEYFVSYYDYYQPEAY+ TDT+IEK++ +NE ID+MR Sbjct: 67 HNKTLAAQLYGEMREFFPKNAVEYFVSYYDYYQPEAYIAATDTFIEKDAKVNEHIDQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D ++V SVS IYG+G E+Y +M++ L G+ + Q+++++ L + QY R Sbjct: 127 SATKALMERRDVVIVCSVSAIYGLGEPETYLKMMLHLSRGEFISQRDIVTRLAELQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+IFP+ E A RV +F +++E+I F PLTG + ++ Sbjct: 187 DVAFTRSTFRVRGDVIDIFPAESEGFAIRVELFDDEVEKILRFDPLTGAIEAELPRFTVF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ L A++ IK +LK R +LLE QRL +R YD+EM+ G C Sbjct: 247 PKTHYVTPKEILQRAVEEIKVDLKERCDYFLSNNKLLEEQRLRERTAYDIEMINEIGYCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTGR GEPPP LF+Y+P+D LL +DESHVT+PQI MYRGD RK L + Sbjct: 307 GIENYSRYLTGRKEGEPPPCLFDYLPKDGLLIIDESHVTVPQIGAMYRGDRSRKENLVNF 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ L+P TI VSATP +ELE +VEQ+IRPTGL+DP +E Sbjct: 367 GFRLPSAFDNRPLKFEEFKKLQPQTIYVSATPADYELE-ASSQVVEQLIRPTGLLDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI + A + R+L+T LTK+MAE+LT YL E IRVRY+HS++ T+E Sbjct: 426 VRPVATQVDDLMSEIRIRAAKNERVLVTTLTKKMAEELTSYLEEHGIRVRYLHSDIDTVE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FD LVGINLLREGLD+PE LVAILDADKEGFLRS SLIQT+GRAAR Sbjct: 486 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSSRSLIQTVGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 NV K I YAD IT S+++ IDET RRR+ Q + N++HNI P+ +++KI++V++ L Sbjct: 546 NVKGKAIFYADKITDSMRVTIDETKRRRDIQQKFNEEHNITPKQIEKKIVDVMEVALTQT 605 Query: 739 ------EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 E+ IS D ++ LS K+ A + L +QM A L FEEAA +RDE Sbjct: 606 SVFKAPEEKRERPISFKEWDKRRHKLSAKELSAKIDKLEEQMLKLASELKFEEAASVRDE 665 Query: 790 IKRLK 794 ++ L+ Sbjct: 666 MQALQ 670 >gi|312897551|ref|ZP_07756971.1| excinuclease ABC subunit B [Megasphaera micronuciformis F0359] gi|310621403|gb|EFQ04943.1| excinuclease ABC subunit B [Megasphaera micronuciformis F0359] Length = 720 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/665 (54%), Positives = 471/665 (70%), Gaps = 4/665 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQPAAI L GI S + Q+LLG TG+GKT+TMAK+IE +Q+P +++A Sbjct: 16 FRVESPFEPTGDQPAAIDSLAHGIESGQWAQVLLGATGTGKTYTMAKLIERVQKPTLIIA 75 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N V YFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID++RH Sbjct: 76 HNKTLAAQLCSEFKAFFPDNEVGYFVSYYDYYQPEAYIPTTDTYIEKDSAINDEIDKLRH 135 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G Q E+L LV QY R Sbjct: 136 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQEKSQTEILRKLVDIQYTRN 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGTFRV GD+IE+FP+ + R+ MFG++I+ ++E LTG+ + + I +Y Sbjct: 196 DLDLQRGTFRVHGDTIEVFPAAFDSSVIRIEMFGDEIDRMTEVDVLTGEVLAERKHIAVY 255 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A+ I EELK RL L+ RLLEAQRLEQR YD+EM+E G C Sbjct: 256 PASHYVTTKEKMQRALGTISEELKERLQYLKSRERLLEAQRLEQRTRYDMEMMEEMGYCS 315 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR GE P TL +Y P+D ++ +DESHVTIPQ+ MY GD RK +L EY Sbjct: 316 GIENYSRHLSGRKAGEAPYTLLDYFPDDFMILIDESHVTIPQLRAMYAGDQSRKESLVEY 375 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATPG +E+E Q + +QIIRPTGL+DP VE Sbjct: 376 GFRLPSAKDNRPLNFDEFTERINQIVYVSATPGDYEME-VQTNLAQQIIRPTGLLDPKVE 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+MAEDLTE+L E I VRY+HS++ T+E Sbjct: 435 VRPVTGQMDDLLGEIRKRIEKKERVLVTTLTKKMAEDLTEFLKETGILVRYLHSDIATIE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T+LIQT+GRAAR Sbjct: 495 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTALIQTMGRAAR 554 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YADT+T S+Q A+DET RRR Q +NK+H+I P+SVK+ EV++ I L Sbjct: 555 NEHGTVIMYADTVTGSMQRAMDETERRRAVQEAYNKEHHITPKSVKK---EVVNLIELTK 611 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 + A L+K+ + SL ++M A+ L FE+AA IRD + RL+ Sbjct: 612 VSEEEKGYGAADELLTKEALHKVIHSLTQEMKKASRQLEFEKAAEIRDRLGRLRQELSQM 671 Query: 801 GLDDS 805 DD+ Sbjct: 672 SHDDT 676 >gi|227488124|ref|ZP_03918440.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227091986|gb|EEI27298.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum ATCC 51867] Length = 697 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/661 (53%), Positives = 487/661 (73%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L + I EK +L+G TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVISEYEPAGDQPKAIKELTERIQRGEKDIVLMGATGTGKSATAAWLIEQVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY +++++G+ +++ L LV QY+R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLKIEVGEEIDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FRV GD+++I P++ E+VA RV FG++++++ +PLTG+ IRNV+ ++I+ Sbjct: 208 DYDLKRGAFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDQLYYIHPLTGEIIRNVDVLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+ + A++ I+EEL+ R+ E G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYIASEGRVEKAIEQIREELEERITSFENRGKLLEAQRLRMRTEYDLEMIEEMGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PPPTL +Y PED L +DESHVT+PQI GMY GD RK L E+ Sbjct: 327 GIENYSRHMDGREAGDPPPTLIDYFPEDFLTIIDESHVTVPQIGGMYEGDASRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ + T+ +SATPG +EL G VEQ+IRPTGLVDP + Sbjct: 387 GFRLPSALDNRPLTWEEFEERKGQTVYMSATPGDYELAAAGGEFVEQVIRPTGLVDPKIV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + A++ R+L+T LTK+MAEDLTEYL E +RVRYMHS+V TL+ Sbjct: 447 VKPTKGQIDDLIHEIRVRAEKKERVLVTTLTKKMAEDLTEYLQENGVRVRYMHSDVDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRKLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTKSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD+IT S+Q AIDET RRRE Q+ +NK+H I+PQ +++KI +++D ++ ED Sbjct: 567 NVSGEVHMYADSITDSMQQAIDETERRREMQIAYNKEHGIDPQPLRKKIADILD-LVYED 625 Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A A ++ D ++++ + + +K LR QM AA LNFE AAR+RDEI L Sbjct: 626 AEEGETPSADAVVAKDYDVSTMAQDEVEKLIKDLRAQMGAAARELNFELAARLRDEIVSL 685 Query: 794 K 794 + Sbjct: 686 E 686 >gi|311898894|dbj|BAJ31302.1| putative UvrABC system protein B [Kitasatospora setae KM-6054] Length = 696 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/683 (53%), Positives = 481/683 (70%), Gaps = 21/683 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 I + + + F++ + Y P+GDQPAAIA+L + + + EK +LLG TG+GK+ T A +IE Sbjct: 4 ITSIERSVAPFEVVSPYQPNGDQPAAIAELERRVRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V+LK+G+ V++ LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLKVGEEVDRDALLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD++EIFP + E++A R+ MFG++IE + +PLTG+ Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTVEIFPVY-EELAVRIEMFGDEIEALYTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I +++ ++ SHYV + A+ I+ EL+ L +EK+G+LLEAQRL R TYD+ Sbjct: 243 ISQDDSVYVFPASHYVAGPERMERAIAGIEAELEQSLARMEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C +ENYS + GR PG PP TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGTCSGVENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLVEHGFRLPSAMDNRPLKWEEFQERIGQTVYLSATPGKYELARGDG-QVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ Q++D+ EI + R+L+T LTK+MAEDLT+Y +IRVR Sbjct: 422 PTGLIDPEVIVKPTEGQIDDLVHEIRQRVAKDERVLVTTLTKKMAEDLTDYFLGLDIRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT ++ LAI ET RRR Q +N++H I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMDLAISETNRRRAVQQAYNEEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNISIDA--QQ---------LSLSKKKGK----AHLKSLRKQ----M 771 +++ + ED T + QQ L + +K K A L L +Q M Sbjct: 602 DLLSSMSGEDVDTEELLATGYRQQGKGRAPVPSLGIDRKPAKSLPAAELADLIQQMTERM 661 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA L FE AAR+RDE+K LK Sbjct: 662 HTAAAELQFEAAARLRDEVKELK 684 >gi|139473634|ref|YP_001128350.1| excinuclease ABC subunit B [Streptococcus pyogenes str. Manfredo] gi|189038004|sp|A2RE43|UVRB_STRPG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|134271881|emb|CAM30118.1| UvrABC system protein B (UvrB protein) [Streptococcus pyogenes str. Manfredo] Length = 663 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQIDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|120602573|ref|YP_966973.1| excinuclease ABC subunit B [Desulfovibrio vulgaris DP4] gi|189037964|sp|A1VDN0|UVRB_DESVV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|120562802|gb|ABM28546.1| Excinuclease ABC subunit B [Desulfovibrio vulgaris DP4] Length = 677 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/672 (52%), Positives = 468/672 (69%), Gaps = 20/672 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ T++ P+GDQP AI Q++ + + Q+LLGVTGSGKTFT+A VI A RPA++ Sbjct: 4 TCFRLHTEFEPTGDQPEAIGQIVANLGQGVRDQVLLGVTGSGKTFTVANVIAACNRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++ Sbjct: 64 LAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G L++ LV+ QY+ Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQ 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD +E+ P++ + A R+ FG+DI+ ISE PLTG+ + +V Sbjct: 184 RNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SHYV+ R L AM I++EL RL E + RL+EAQRLEQR DLEM+E G Sbjct: 244 IYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+L GR G+PP L +Y P+D LLFVDESH+T+PQ+ MY+GD RK+TL Sbjct: 304 CNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL F E+ T+ VSATPG WEL++ QG+I EQIIRPTGLVDP Sbjct: 364 DFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPV 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R R QV+D+ E A + R+L+T LTKRMAEDLTE+L + VRY+HS++ T Sbjct: 424 VEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+ II+ LR G+ DVLVGINLLREGLDIPE LV+ILDADKEGFLRS SLIQT GRA Sbjct: 484 MERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN +VILYADT+T S++ A+DET RRRE+Q N+ + I P+++++ + D I Sbjct: 544 ARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS 603 Query: 739 EDA----------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 + A N++ + S + H++ L ++M AA L FE Sbjct: 604 AASEGGKGRGRGRGRQAAPAVENVA----EYGTSPEDMAKHIQKLEREMREAAKELEFER 659 Query: 783 AARIRDEIKRLK 794 AA +RD I+ L+ Sbjct: 660 AATLRDRIRLLR 671 >gi|303229510|ref|ZP_07316298.1| excinuclease ABC, B subunit [Veillonella atypica ACS-134-V-Col7a] gi|302515635|gb|EFL57589.1| excinuclease ABC, B subunit [Veillonella atypica ACS-134-V-Col7a] Length = 726 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/681 (52%), Positives = 484/681 (71%), Gaps = 28/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+IEIFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A++ I+ EL +L +L+ E RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMKIAVERIEAELDEQLAKLKAEDRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVTIPQ+ MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E + + EQIIRPTG++DP +E Sbjct: 374 GFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEME-VETNVAEQIIRPTGILDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q A+DET RRR Q +N +H+I P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAMDETDRRRAVQEAYNIEHHITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTNI--------------------------SIDAQQLS-LSKKKGKAHLKSLRKQMHL 773 T+ DA +++ ++ ++ ++ L +QM Sbjct: 613 DMVTDGKGLSPKKGKKKSSAAGMDHGHEPYAQDADATKVAEITAEELYNKIEELDRQMKA 672 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE+AA++RD++ L+ Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693 >gi|260903783|ref|ZP_05912105.1| excinuclease ABC subunit B [Brevibacterium linens BL2] Length = 710 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/690 (52%), Positives = 480/690 (69%), Gaps = 30/690 (4%) Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188 H D+T F++ ++Y PSGDQP AI ++ + + E+ +LLG TG+GK+ T A + Sbjct: 11 GHRPDVTRTVAPFEVVSEYSPSGDQPTAITEISERLDQGERDIVLLGATGTGKSATTAWL 70 Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 IE +QRP ++MAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+ Sbjct: 71 IEQVQRPTLIMAPNKTLAAQLANEFRQLLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 130 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 SS+N++++R+RHSAT SLL R D +VVS+VSCIYG+G+ E Y +V L+ G+ ++ EL Sbjct: 131 SSVNDEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRMVTLQRGEQCDRDEL 190 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 L V QY R D+ RGTFRV GD++EI P + E++A R+ FG+ IE + +PLTG Sbjct: 191 LKRFVSMQYARNDMAFTRGTFRVRGDTVEIIPQY-EELALRIEFFGDVIESLQTLHPLTG 249 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + +R ETI ++ SHYV + A+ I++EL+ RL E E + +LLEAQRL+ R TY Sbjct: 250 EIVREEETIHVFPASHYVAGENRMGRAVSEIEDELQKRLSEFESQNKLLEAQRLKMRTTY 309 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEM+E+ G IENYSR++ GR G P L +Y PED LL VDESHVT+PQI GMY Sbjct: 310 DLEMMESMGFTSGIENYSRHIDGRPAGSAPNCLLDYFPEDFLLVVDESHVTVPQIGGMYE 369 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK TL E+GFRLPS MDNRPL+F+E+ + +SATPG++EL G V+QI Sbjct: 370 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFRERIGQAVYLSATPGNFELGNANGY-VQQI 428 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 IRPTGLVDP + ++ + Q++D+ DEI R+L+T LTK+MAEDLT+YL E ++R Sbjct: 429 IRPTGLVDPEIVVKPTKGQIDDLLDEIRTRVDAQERVLVTTLTKKMAEDLTDYLLEHDVR 488 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V+Y+HS+V TL R+E++ +LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS Sbjct: 489 VQYLHSDVDTLRRVELLTELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSA 548 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 TSLIQTIGRAARN+N +V +YADTIT+S++ AIDET RRRE Q+ HNK+H I+P + +K Sbjct: 549 TSLIQTIGRAARNINGQVHMYADTITRSMREAIDETDRRREIQVAHNKEHGIDPMPLVKK 608 Query: 729 IMEVIDPILLEDAATT---------------NISIDAQQLSLSKKKGKAH---------L 764 I ++ + + EDA T N ++ +Q + K G + Sbjct: 609 IADITERLQREDADTRELLTEFDYGKGKRGYNSTLTDEQRQAAGKSGSLRPPAADLTELI 668 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +SL QMH AA L FE AAR+RDE+ LK Sbjct: 669 ESLTSQMHTAAAELQFELAARLRDELSDLK 698 >gi|329769751|ref|ZP_08261152.1| UvrABC system protein B [Gemella sanguinis M325] gi|328838113|gb|EGF87731.1| UvrABC system protein B [Gemella sanguinis M325] Length = 665 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/655 (53%), Positives = 467/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ + P GDQ AI +L +GI++ EK Q LLG TG+GKTFT+A +I+ + +P +V+A Sbjct: 10 FDLQSKFEPKGDQVRAINELTEGINNGEKYQTLLGATGTGKTFTIANIIKNVGKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++LS L+ QY R Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKILSKLIDIQYMRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD IEIFP+ + + R+ MFG++I+ I E LTG+ + +E I IY Sbjct: 190 DIEFTRGTFRVRGDVIEIFPASRSENSVRIEMFGDEIDRIREINSLTGEVLSELEHIAIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V A+K I+ EL+ RL E +LLEAQRLEQR YDLEM+E G C Sbjct: 250 PASHFVAGEEKTKEAIKRIRAELEDRLKVFNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R PG P TL +Y P+D LL VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPKDWLLVVDESHVTLPQVRGMYNGDRARKQVLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL ++E+ I VSATPG +ELE I EQIIRPTGL+DP ++ Sbjct: 370 GFRLPTALDNRPLNYQEFENKLNQAIFVSATPGDYELEHSSK-ITEQIIRPTGLLDPVID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV D+ E ++G R+L+T LTK+MAE LT YL E ++V Y+HS++KTLE Sbjct: 429 VRPVSDQVFDITKEAEKIIEKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFD+LVGINLLREGLDIPE LVAILDADKEGFLR +L+QTIGRAAR Sbjct: 489 RTEIIRNLRLGKFDILVGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T+S++ AIDET RRRE Q+ +N++H I PQ++ I ++ D I + Sbjct: 549 NANGRVIMYADNMTRSMKKAIDETNRRREIQMAYNEEHGITPQTI---IKDIRDSISAKK 605 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +++ +++S ++ + HL L ++M AA+ FE AA++RD I LK Sbjct: 606 EVIEDETLELEEVSNITDDNIEEHLAELEQEMFSAAEKFEFERAAKLRDTIAELK 660 >gi|71903721|ref|YP_280524.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180] gi|90111056|sp|Q48SZ1|UVRB_STRPM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71802816|gb|AAX72169.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180] Length = 663 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIIYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|320354361|ref|YP_004195700.1| Excinuclease ABC subunit B [Desulfobulbus propionicus DSM 2032] gi|320122863|gb|ADW18409.1| Excinuclease ABC subunit B [Desulfobulbus propionicus DSM 2032] Length = 678 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/663 (53%), Positives = 470/663 (70%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PSGDQPAAI +L + + + Q+LLGVTGSGKTFTMA+V+ +QRP +VMA Sbjct: 9 FEIVSDFTPSGDQPAAIDRLTANLEAGVRDQILLGVTGSGKTFTMAQVVARVQRPTLVMA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL++EF+ FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+SSIN+ ID++RH Sbjct: 69 PNKTLAAQLFAEFRELFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINDAIDKLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D ++V+SVSCIYG+GS + Y M + L++GD +E+ L Y+R Sbjct: 129 SATRSLLTRRDVLIVASVSCIYGLGSPDEYKNMHLFLRVGDDYPMEEVQRRLAFMLYERN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD I+IFP H E+ A RV FG+ I+ +S PL G + +V + ++ Sbjct: 189 EFSFHRGTFRVRGDVIDIFPVHEEEHAVRVEFFGDTIDSLSIIDPLRGVVVADVAEMTVF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + L +AM+ I++EL++RL EL+ + RL+EAQRLEQR +DLEM+ G C Sbjct: 249 PGSHFVTSQDNLKSAMRSIQDELQLRLSELQADNRLVEAQRLEQRTLFDLEMIAELGYCN 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG+ PG PPP L +Y P+D LL +DESH+ +PQI GM+ GD RK TL Y Sbjct: 309 GIENYSRHLTGKEPGAPPPNLLDYFPDDYLLIIDESHIGVPQIGGMFNGDRSRKQTLVNY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ + VSATPG +EL + IVEQ+IRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLRFDEFEQRIRQVVYVSATPGPYELNKAGEHIVEQLIRPTGLLDPRIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A TQV+D+ +EI + A++ +L+T LTKRMAEDLT+Y E IRVRY+HS++KTLE Sbjct: 429 VRPAATQVDDLLEEIRVRAERNQAVLVTTLTKRMAEDLTQYYEELGIRVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E+IR+LR ++DVL+GINLLREGLDIPE LVA+LDADKEGFLRS+ SL+QT GRAAR Sbjct: 489 RVELIRELRHREYDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLVQTCGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N VILYAD IT S++ IDET RRR Q +N++ I PQ+V +I + + Sbjct: 549 NAEGTVILYADKITPSMRYTIDETNRRRAIQEAYNRERGIVPQTVISEIKDAMAQHLRAA 608 Query: 734 --DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 P +A + + + + S + + L K+M AA L FEEAA RD I+ Sbjct: 609 GWQPADEYEAPGLLTAAEPEVVYHSVDELHREIAELEKKMQEAAKQLAFEEAAGYRDRIR 668 Query: 792 RLK 794 LK Sbjct: 669 ELK 671 >gi|46580016|ref|YP_010824.1| excinuclease ABC subunit B [Desulfovibrio vulgaris str. Hildenborough] gi|81830433|sp|Q72BN0|UVRB_DESVH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|46449432|gb|AAS96083.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311233985|gb|ADP86839.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris RCH1] Length = 677 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/672 (52%), Positives = 468/672 (69%), Gaps = 20/672 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ T++ P+GDQP AI Q++ + + Q+LLGVTGSGKTFT+A VI A RPA++ Sbjct: 4 TCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++ Sbjct: 64 LAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G L++ LV+ QY+ Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQ 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD +E+ P++ + A R+ FG+DI+ ISE PLTG+ + +V Sbjct: 184 RNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SHYV+ R L AM I++EL RL E + RL+EAQRLEQR DLEM+E G Sbjct: 244 IYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+L GR G+PP L +Y P+D LLFVDESH+T+PQ+ MY+GD RK+TL Sbjct: 304 CNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL F E+ T+ VSATPG WEL++ QG+I EQIIRPTGLVDP Sbjct: 364 DFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPV 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R R QV+D+ E A + R+L+T LTKRMAEDLTE+L + VRY+HS++ T Sbjct: 424 VEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+ II+ LR G+ DVLVGINLLREGLDIPE LV+ILDADKEGFLRS SLIQT GRA Sbjct: 484 MERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN +VILYADT+T S++ A+DET RRRE+Q N+ + I P+++++ + D I Sbjct: 544 ARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS 603 Query: 739 EDA----------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 + A N++ + S + H++ L ++M AA L FE Sbjct: 604 AASEGGKGKGRGRGRQAAPAVENVA----EYGTSPEDMAKHIQKLEREMREAAKELEFER 659 Query: 783 AARIRDEIKRLK 794 AA +RD I+ L+ Sbjct: 660 AATLRDRIRLLR 671 >gi|111223999|ref|YP_714793.1| excinuclease ABC subunit B [Frankia alni ACN14a] gi|111151531|emb|CAJ63249.1| ATP-dependent DNA excision repair enzyme UvrABC, UvrB subunit [Frankia alni ACN14a] Length = 725 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/682 (52%), Positives = 480/682 (70%), Gaps = 30/682 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PSGDQPAAI +L + + + + +LLG TG+GK+ T A ++E +QRP +VMA Sbjct: 34 FEVVSDFSPSGDQPAAIDELARRVRAGDTNVVLLGATGTGKSATTAWLVERLQRPTLVMA 93 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH Sbjct: 94 PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 153 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+G+ + Y +V+L++GD +E+ LL V QY R Sbjct: 154 SATMSLLTRRDVIVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDLLLRRFVDVQYTRN 213 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++E+FP + E++A RV MFG++IE ++ +PLTG+ +R VE I ++ Sbjct: 214 DLAFTRGTFRVRGDTVEVFPVY-EELAVRVEMFGDEIERLTYLHPLTGEIVREVEEIFVF 272 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL RL +E++G+LLEAQRL R TYD+EM+ G C Sbjct: 273 PATHYVAGPERMERAIAGIEAELAERLATMERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 332 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y P+D LL +DESHVT+PQI GMY GD RK L E+ Sbjct: 333 GIENYSRHIDGREAGTAPHTLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEH 392 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLR+EE+ T+ +SATPG +EL + G +VEQIIRPTGL+DP V Sbjct: 393 GFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGRADG-VVEQIIRPTGLLDPEVV 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L A++ R+L+T LTK+M+EDLT+YL E IRVRY+HSEV TL Sbjct: 452 LKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++ +LR G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 512 RVELLTELRRGDFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N + ++PQ +++K+++++D ++ E Sbjct: 572 NVSGQVHMYADKITPSMRHAIDETNRRREKQMAYNAERGLDPQPLRKKVVDILDDMVRES 631 Query: 741 AATTNISIDAQQLSLS-------KKKGKAH---------------------LKSLRKQMH 772 A I + S K +G A ++ L QMH Sbjct: 632 AEGELIGGGGRSQSRGKAPVPGMKSRGGAQGTVGRYAAELAGMPSHELAQLIRQLDDQMH 691 Query: 773 LAADNLNFEEAARIRDEIKRLK 794 AA L FE AAR+RDEI LK Sbjct: 692 EAAKELQFELAARLRDEIAELK 713 >gi|313837402|gb|EFS75116.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA2] gi|314927925|gb|EFS91756.1| excinuclease ABC subunit B [Propionibacterium acnes HL044PA1] gi|314971786|gb|EFT15884.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA3] gi|328907048|gb|EGG26814.1| excinuclease ABC, B subunit [Propionibacterium sp. P08] Length = 701 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/689 (51%), Positives = 489/689 (70%), Gaps = 27/689 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + ++ + F + +++ PSGDQP AIA+L K ++ E+ +LLG TG+GKT T+A + E Sbjct: 4 VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNDGEQDVVLLGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS Sbjct: 64 KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y ++ L++G ++ ELL Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R DI RGTFRV GD++EIFP + E+ A RV FG++IE ++ +PLTG+ Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I E + ++ +HYV + A+ I++EL+ RL LE++G+LLEAQRL R TYD+ Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIVSIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G+C IENYSR++ GR PG P L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPL+F+E+ T+ +SATPGS+E+E+ G+ VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTERIGQTVYLSATPGSYEIERAHGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ Q++D+ EI+ +G R+L+T LTK+MAEDLT+YL E IR R Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIHTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ S Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARNVN +VI+YAD +T S+++AI+ET RRR+ Q+ +NK+H I+PQ +++KI Sbjct: 542 LIQTVGRAARNVNGQVIMYADQVTDSMRIAINETNRRRDIQMAYNKEHGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAAT----------------TNISIDAQQLSLSKKKGKAHLK--------- 765 ++ + + E+A T ++ D Q+ + K+ + + Sbjct: 602 DITEMLAREEADTDQLVERFNYGKGHRGYNSMITDEQRAAQGKRLDASKMAEEDLGNLIV 661 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +L +M AA L FE AAR+RDEI LK Sbjct: 662 NLTNEMRSAAGELKFEVAARLRDEIADLK 690 >gi|300771027|ref|ZP_07080904.1| excision endonuclease subunit UvrB [Sphingobacterium spiritivorum ATCC 33861] gi|300762300|gb|EFK59119.1| excision endonuclease subunit UvrB [Sphingobacterium spiritivorum ATCC 33861] Length = 677 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/669 (52%), Positives = 488/669 (72%), Gaps = 14/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+ G++ E Q LLGVTGSGKTFT+A VI+ Q+PA++++ Sbjct: 3 FKLTSEYQPTGDQPQAIKELVAGVNDGETYQTLLGVTGSGKTFTIANVIQETQKPALILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++ ++TYIEK+ +INE+I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLAINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + T SL+ R D +VVSSVSCIYG+G+ E +S+ I + +G ++ + L LV+ Y R Sbjct: 123 ATTSSLMSGRRDIVVVSSVSCIYGMGNPEDFSRSIFRFAVGTTISRNAFLHKLVEILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++++P++L D A RVS FG++I+E+S P++ + I +E + + Sbjct: 183 TTAEFKRGTFRVKGDTVDVYPAYL-DYAIRVSFFGDEIDELSAIDPVSAKTINKMEDLAL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VTP+ ++ I++EL R +LE EG++LEA+RLE+R+ YDLEM+ G C Sbjct: 242 FPANLFVTPKEKFTQSIWAIQDELMQRKAQLEDEGKMLEAKRLEERVNYDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PG P TL +Y P+D LL +DESHVTIPQ+ MY GD RK +L E Sbjct: 302 SGIENYSRFFDGRQPGMRPFTLLDYFPDDYLLVIDESHVTIPQLRAMYGGDRSRKVSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL F E+ L TI VSATPG +EL+Q +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLNFPEFESLTNQTIYVSATPGDYELQQTEGVVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A QV+D ++++ ++G R+L T LTKRMAE+LT+Y+ NI+VRY+HSEVKTL Sbjct: 422 EVRPAINQVDDFLEQVDKTIKEGGRVLATTLTKRMAEELTKYMTRLNIKVRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 482 ERVEILRGLRLGEFDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRSERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733 RN +VI+YAD +T S+Q+ IDET RRREKQ+++N++H+I P++V +E+IME V Sbjct: 542 RNDKGRVIMYADKMTDSMQITIDETNRRREKQMKYNEEHHITPRTVGKTREEIMEQTSVA 601 Query: 734 D------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D I +E T ++ D LS+K K +++ +K+M AA ++F EAA++R Sbjct: 602 DFNGMEPKIYVEPDPTVAVAADPVMQYLSEKDLKKAIETTKKRMEKAAKEMDFLEAAKLR 661 Query: 788 DEIKRLKSS 796 DE+ L+ + Sbjct: 662 DEMFSLEKA 670 >gi|90962150|ref|YP_536066.1| excinuclease ABC subunit B [Lactobacillus salivarius UCC118] gi|90821344|gb|ABD99983.1| Excinuclease ABC subunit B [Lactobacillus salivarius UCC118] Length = 666 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 475/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +GI EK Q+L+G TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + + L++G +E+ +LL+ L+ Q++R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ I + E I I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L TA++ I++EL+ R EL+ EG+LLEAQRL+QR TYD+EML+ G C Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL EE+ I +SATPG +E E+ +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+GKFDVLVGINLL+EG+D+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLKEGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T S++ AI ET RRR Q ++NK HNI P+++ + I I + Sbjct: 549 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + TNIS +SKK+ + +L +QM AA L+FEEAA +RD + LK+ Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKA 663 >gi|29832815|ref|NP_827449.1| excinuclease ABC subunit B [Streptomyces avermitilis MA-4680] gi|81838137|sp|Q829Y6|UVRB_STRAW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|29609936|dbj|BAC73984.1| putative excinuclease ABC subunit B [Streptomyces avermitilis MA-4680] Length = 713 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/700 (51%), Positives = 482/700 (68%), Gaps = 38/700 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERTVAPFEVVSPYQPSGDQPAAIAELDRRIRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V L++GD V++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEVDRDDLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + + ++ SHYV L A I++EL RL ELEK+G+LLEAQRL R TYDL Sbjct: 243 ISDDQHLYVFPASHYVAGPERLERAANDIEKELGERLTELEKQGKLLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC +ENYS + GR PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ + +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQAVYLSATPGKYELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK+ I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNKEKGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR---------------------- 768 +++ I ED T + + + K KA + SL Sbjct: 602 DIVAQIAREDIDTEQLLGSGYRQAKDGKGAKAPVPSLGGKAAAKGAKSAKGKAKETVPTD 661 Query: 769 --------------KQMHLAADNLNFEEAARIRDEIKRLK 794 +M AA +L FE AAR+RDE+ +K Sbjct: 662 RPAAKLAEEIEELTNRMRAAAADLQFEIAARLRDEVSEMK 701 >gi|301301267|ref|ZP_07207422.1| excinuclease ABC, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851143|gb|EFK78872.1| excinuclease ABC, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 666 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +GI EK Q+L+G TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + + L++G +E+ +LL+ L+ Q++R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ I + E I I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L TA++ I++EL+ R EL+ EG+LLEAQRL+QR TYD+EML+ G C Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTAELKSEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL EE+ I +SATPG +E E+ +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+GKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q ++NK HNI P+++ + I I + Sbjct: 549 NAGGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + TNIS +SKK+ + +L +QM AA L FEEAA +RD + LK+ Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLGFEEAATLRDTVMELKA 663 >gi|25989628|gb|AAN28958.1| UvrB [Corynebacterium glutamicum] Length = 698 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/673 (53%), Positives = 479/673 (71%), Gaps = 12/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQPAAI +L + + E+ +L+G TG+GK+ T A +IE QRPA+VMA Sbjct: 28 FVVVSEFEPAGDQPAAIKELDERLDRGERNVVLMGATGTGKSATAAWLIEKQQRPALVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ +SY V L +G+ +++ L LV QY+R Sbjct: 148 SATSSLLSRRDIVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RG FRV GD+++I P++ E++A R+ FG++I+ + +PLTG IR V I+I+ Sbjct: 208 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IK EL++RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVADIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE++ R T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E N VRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLE-NGSVRYLHSDIDTLQ 505 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 506 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 565 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + Sbjct: 566 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 625 Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D A + S DA + S+ K+ + + L QM AA ++ FE A R+RDEI Sbjct: 626 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARDVKFELAGRLRDEIFE 685 Query: 793 LKSSPYFQGLDDS 805 LK +G+ D+ Sbjct: 686 LKKE--LRGIKDA 696 >gi|197302521|ref|ZP_03167576.1| hypothetical protein RUMLAC_01249 [Ruminococcus lactaris ATCC 29176] gi|197298419|gb|EDY32964.1| hypothetical protein RUMLAC_01249 [Ruminococcus lactaris ATCC 29176] Length = 692 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/669 (53%), Positives = 484/669 (72%), Gaps = 8/669 (1%) Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 H+S S H+ F+++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTM Sbjct: 24 HKSSSQGGHA-----FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTM 78 Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 A VI+ +Q+P +V+A NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP +DTYI Sbjct: 79 ANVIQQLQKPTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYI 138 Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 K+S+IN++ID++R SAT +L+ER D I+V+SVSCIYG+G+ Y M++ L+ G ++ Sbjct: 139 AKDSAINDEIDKLRLSATMALMERRDVIIVASVSCIYGLGNPVDYQNMVISLRPGMIKDR 198 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 E+++ L++ QY R D+ RGTFRV GD +EI P++ D A RV FG++I+ ISE Sbjct: 199 DEVMAKLIEIQYDRNDMDFHRGTFRVRGDVLEIIPAYESDTAIRVEFFGDEIDRISEIDI 258 Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 LTG+ ++ I I+ SHYV R + A+ I+EEL+ R+ E ++ +LLEAQR+ +R Sbjct: 259 LTGEVKDELKHIAIFPASHYVVDRENIKRAVADIEEELEERVKEFKRNDKLLEAQRIAER 318 Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 +D+EML+ TG C IENYSR+L+G PG+ P TL +Y P+D ++ +DESH T+PQI G Sbjct: 319 TNFDIEMLKETGFCSGIENYSRHLSGLKPGQAPYTLIDYFPDDFIMMIDESHKTVPQIGG 378 Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MY GD RK TL +YGFRLPS DNRPL FEE+ + VSATPG +E++ + + Sbjct: 379 MYHGDQSRKQTLVDYGFRLPSAKDNRPLNFEEFESKINQVLFVSATPGQYEMDH-ELLRA 437 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQ+IRPTGL+DP VE+R Q++D+ EIN ++ ++L+T LTK+MAEDLT+Y+ E Sbjct: 438 EQVIRPTGLLDPEVEVRPVEGQIDDLLGEINKEIEKKNKVLVTTLTKKMAEDLTDYMREV 497 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 IRV+Y+HS++ TLER EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFL Sbjct: 498 GIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFL 557 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+TSLIQTIGRAARN VI+YADT+T+S+QLAIDET RRRE Q+++NK+H I P+++ Sbjct: 558 RSETSLIQTIGRAARNSEGHVIMYADTMTESMQLAIDETQRRREIQMQYNKEHGITPKTI 617 Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 ++ + ++I + + A + ++ S+S+K+ + ++ L KQM AA LNFE AA Sbjct: 618 QKSVRDLIS--ISKKVAAQELKMEKDPESMSRKELEKLVRDLEKQMKKAAAELNFEVAAE 675 Query: 786 IRDEIKRLK 794 +RD++ LK Sbjct: 676 LRDKLIDLK 684 >gi|21910532|ref|NP_664800.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS315] gi|28895774|ref|NP_802124.1| excinuclease ABC subunit B [Streptococcus pyogenes SSI-1] gi|94988747|ref|YP_596848.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS9429] gi|94992572|ref|YP_600671.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS2096] gi|25453316|sp|Q8K743|UVRB_STRP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189038000|sp|Q1JBD1|UVRB_STRPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189038001|sp|Q1JLB5|UVRB_STRPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|21904732|gb|AAM79603.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes MGAS315] gi|28811023|dbj|BAC63957.1| putative excinuclease ABC subunit B [Streptococcus pyogenes SSI-1] gi|94542255|gb|ABF32304.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS9429] gi|94546080|gb|ABF36127.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS2096] Length = 663 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|283850421|ref|ZP_06367710.1| excinuclease ABC, B subunit [Desulfovibrio sp. FW1012B] gi|283574447|gb|EFC22418.1| excinuclease ABC, B subunit [Desulfovibrio sp. FW1012B] Length = 671 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/664 (52%), Positives = 468/664 (70%), Gaps = 8/664 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ++++Y P GDQP AI L + Q+LLG TG+GKTFTMA+V+ + RPA+V+ Sbjct: 2 LFQLESEYTPQGDQPGAIDALAANLDQGVPSQVLLGATGTGKTFTMAQVVARLNRPALVI 61 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSEFK FP+NAVEYFVSYYDYYQPEAY+PRTDTYIEK++SIN+ ID++R Sbjct: 62 APNKTLAAQLYSEFKGLFPNNAVEYFVSYYDYYQPEAYLPRTDTYIEKDASINDDIDKLR 121 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT SLL R D ++V+SVSCIYG+GS + Y +M++ L +G+ + +L LV+ QY+R Sbjct: 122 HAATHSLLTRKDVLIVASVSCIYGLGSRDYYERMVLTLTVGEKTGMEAVLGRLVEIQYER 181 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RG FRV GD IE+ P++ D A R+ FG+++E I E PLTG+ + +++ + Sbjct: 182 NDYDFHRGVFRVRGDVIELIPAYSRDRALRLEFFGDELESILETDPLTGEVLGSMQKAIV 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHYV+ R LN A+ I+EEL++RL EL LL AQRLE R DLEM+E G C Sbjct: 242 FPASHYVSDRTNLNRAVSDIREELRLRLTELRGANDLLAAQRLEMRTMQDLEMIEELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR GEPP TL +Y PED +LFVDESH+T+PQI GM+ GD RK TL + Sbjct: 302 NGIENYSRHLDGRKAGEPPYTLLDYFPEDFILFVDESHITVPQIGGMFAGDRSRKQTLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL FEE+ + VSATPG WE+ + +G++VEQIIRPTGL+DP V Sbjct: 362 FGFRLPSALDNRPLNFEEFLGRIGQAVYVSATPGDWEVNRSEGVVVEQIIRPTGLLDPLV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + QV+D+ E QG R+L+T LTKRMAE+L EY + RY+HS+++TL Sbjct: 422 EVRPTKGQVDDLMAECRARVAQGERVLVTTLTKRMAEELNEYFNSMGVPSRYLHSDIETL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ II+ LR G+F VLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRA+ Sbjct: 482 ERVAIIKALRQGEFSVLVGINLLREGLDIPEVSLVAILDADKEGFLRSVRSLIQTFGRAS 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV +VILYADT+T+S++ A+DET RRRE+Q N++ + P+++ + + V+D + + Sbjct: 542 RNVRGRVILYADTVTRSMRAAMDETARRRERQEASNRETGMTPRTIVKAMDSVLDSLYGQ 601 Query: 740 DAAT---TNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 A T + ++ +S K + ++ L ++M AA L FE+AA +RD + Sbjct: 602 GAGPAGETGVRTGVREEVTAYGDMSPKALEKKIRMLEREMREAAKALEFEKAAELRDRVA 661 Query: 792 RLKS 795 L++ Sbjct: 662 ALRA 665 >gi|94990640|ref|YP_598740.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270] gi|189038002|sp|Q1JGE8|UVRB_STRPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|94544148|gb|ABF34196.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270] Length = 663 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATASLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|196249375|ref|ZP_03148073.1| excinuclease ABC, B subunit [Geobacillus sp. G11MC16] gi|196211132|gb|EDY05893.1| excinuclease ABC, B subunit [Geobacillus sp. G11MC16] Length = 659 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/657 (55%), Positives = 473/657 (71%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQP AI +L+ G+ K Q LLG TG+GKTFT++ VI + +P +V+A Sbjct: 5 FQLVSSYQPQGDQPQAIEKLVDGLKRGVKHQTLLGATGTGKTFTISNVIAKVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNTLLRRLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIF + ++ RV FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFQASRDEHCIRVEFFGDEIDRIREVDALTGEVLGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ RL EL ++G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKLAIANIEKELEERLAELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELE G +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFDEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R L+T LTK+MAEDLT+YL E +V Y+HSE+KTLE Sbjct: 424 VRPIAGQIDDLISEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGFKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI ET RRR Q E+NKKH I P+++++ I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRTIQEEYNKKHGIVPRTIQKDIRDVIRATY--- 600 Query: 741 AATTNISIDAQ--QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + +A+ +++K++ + ++ L +M AA L+FE AA++RD I LK+ Sbjct: 601 AAEETETYEAKPTAANMTKQEREELIRQLEAEMKEAAKALDFERAAQLRDVIFELKA 657 >gi|256788422|ref|ZP_05526853.1| excinuclease ABC subunit B [Streptomyces lividans TK24] gi|289772313|ref|ZP_06531691.1| excinuclease ABC, B subunit [Streptomyces lividans TK24] gi|289702512|gb|EFD69941.1| excinuclease ABC, B subunit [Streptomyces lividans TK24] Length = 712 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/699 (51%), Positives = 488/699 (69%), Gaps = 37/699 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQP AIA+L + + + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERTVAPFEVVSPYQPSGDQPTAIAELARRVQAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V L++G+ ++ ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEHDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +P+TG+ Sbjct: 184 RFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPVTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + + ++ SHYV L A+ I++EL RL ELEK+G+LLEAQRL R TYD+ Sbjct: 243 ISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC +ENYS + GR+PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGAYELSRSDG-AVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ NK + ++PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSK-KKGKA-------- 762 +++ I ED T + ++ Q+ +K +G+A Sbjct: 602 DIVAQIAREDVDTEQLLGSGYRQTKEGKGAKAPVPALGGQKTGGAKAARGRAKETAVTDR 661 Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +M AA +L FE AAR+RDE+ +K Sbjct: 662 PAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMK 700 >gi|160947208|ref|ZP_02094375.1| hypothetical protein PEPMIC_01141 [Parvimonas micra ATCC 33270] gi|158446342|gb|EDP23337.1| hypothetical protein PEPMIC_01141 [Parvimonas micra ATCC 33270] Length = 657 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/667 (54%), Positives = 474/667 (71%), Gaps = 17/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI ++ I K +L GVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 3 FVLNSKFKPTGDQPEAIEKISDSIKKGNKEIILKGVTGSGKTFTMANIIEKVQKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SEFK FFP+NAVE+FVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 63 HNKTLAYQLASEFKEFFPNNAVEFFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G Y ++V L+ G ++ E++ LV QY R Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMIKDRDEVIRKLVDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GDS+EIFP + + RV FG++I++ISE LTG I E + IY Sbjct: 183 DINFIRGTFRVRGDSLEIFPVSSSENSIRVEFFGDEIDKISEIDALTGNIIGTREHVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + A+ I +EL+ RL+ L +E +L+EAQRLEQR YDLEML+ G C Sbjct: 243 PASHFATSSEKIERAIGTISKELEERLLVLNQENKLVEAQRLEQRTKYDLEMLQEIGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS +L+GR G P TL +Y P+D L+ VDESHVT+PQI MY GD RK L +Y Sbjct: 303 GVENYSAHLSGRERGSRPYTLIDYFPDDFLIIVDESHVTVPQIGAMYEGDRSRKQNLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE----LEQCQGIIVEQIIRPTGLVD 556 GFRLPS +DNRPL+F E+ + + VSATPG +E LE+ VEQIIRPTGL+D Sbjct: 363 GFRLPSALDNRPLKFTEFESMVNQILYVSATPGKYEKSHNLEE-----VEQIIRPTGLLD 417 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +E+R Q++D+ E+N ++G R+L+T LTK+MAE+LT+YL I+ Y+HS++ Sbjct: 418 PLIEVRKTEGQIDDIIGEVNSVIKKGERVLITTLTKKMAENLTDYLKNVGIKTTYLHSDI 477 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 T+ER+EIIRDLR+GKFDVLVGINLLREGLD+PE +V I+DADKEGFLRS+TS+IQTIG Sbjct: 478 DTIERMEIIRDLRVGKFDVLVGINLLREGLDLPEVSMVIIMDADKEGFLRSETSMIQTIG 537 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARNVN +VI+YAD ITKS+ +AI ET RRRE Q ++N +HNI P+SVK+ I E+I Sbjct: 538 RAARNVNGRVIMYADRITKSMDVAIKETNRRREIQNKYNIEHNITPKSVKKDIREIIQAT 597 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A N+ + + + K ++ ++ L+ +M AAD+L+FE AA IRDEIKRLK Sbjct: 598 ---KVAEDNVDYKTEDVEI--KDYESFIEDLKNEMLSAADSLDFERAASIRDEIKRLKE- 651 Query: 797 PYFQGLD 803 GLD Sbjct: 652 --MWGLD 656 >gi|149181818|ref|ZP_01860308.1| excinuclease ABC subunit B [Bacillus sp. SG-1] gi|148850457|gb|EDL64617.1| excinuclease ABC subunit B [Bacillus sp. SG-1] Length = 660 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 471/655 (71%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQPAAI ++ +GI ++ Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 5 FQLHSKYQPRGDQPAAIKEITQGIRDGKRHQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y ++V L++G +E+ +LL LV QY R Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRVGMEIERNQLLRKLVDVQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ R+ FG++I+ I E LTG+ I + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASRDEHCMRIEFFGDEIDRIREVDSLTGEIIGERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ +L + +E +LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRVAIGNIEQELEEQLKVMREENKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPSGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKKVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + VSATPG +E E +I +QIIRPTGL+DP ++ Sbjct: 365 GFRLPSAMDNRPLKFEEFEQKANQLVYVSATPGPYEGEHSPEMI-QQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EIN ++ R+L+T LTK+M+EDL+ YL E I+V+Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLIGEINERVEKNERVLVTTLTKKMSEDLSAYLKEIGIKVQYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+GK+DVL+GINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRMGKYDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +T S+Q A+DET+RRRE Q+E+N+KH I PQ++++ I +I + Sbjct: 544 NANGHVIMYADKLTDSMQKALDETSRRREIQIEYNEKHGITPQTIQKNIPNLIRATHAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + L+K + + + SL +M AA L+FE AA++RD I LK+ Sbjct: 604 DQTEYEGAQKKVTKLTKPEREKLIASLEGEMKEAARALDFERAAQLRDTILELKA 658 >gi|146296990|ref|YP_001180761.1| excinuclease ABC subunit B [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189037952|sp|A4XKY5|UVRB_CALS8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|145410566|gb|ABP67570.1| Excinuclease ABC subunit B [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 661 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/656 (57%), Positives = 483/656 (73%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FKVVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTLSLRPGMIKDRDEVIRELIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A RV FG++IE I+EF LTG+ I + I+ Sbjct: 184 DIDFRRGRFRVRGDVLEIFPASNTDRAIRVEFFGDEIERITEFDVLTGEVIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTSEKLKRAIKSIEEELEQRLQELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG PP TL +Y P+D ++F+DESHVTIPQ+ MY GD RK L EY Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL++ +VEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-VVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LTEYL + IRVRYMHS++ T+E Sbjct: 423 VHPVKGQIDHLIGEIRKRVEKNQRVLITTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD ITK++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+ + Sbjct: 543 NVDGKVIMYADRITKAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATISVA 602 Query: 741 AATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + ++SK++ + ++K L +QM A L FE+AA+IRD+I LK Sbjct: 603 EEEEKYESIEKDIVQNMSKQEIEEYIKELEQQMKRFAIELEFEKAAKIRDKIFELK 658 >gi|256394788|ref|YP_003116352.1| excinuclease ABC subunit B [Catenulispora acidiphila DSM 44928] gi|256361014|gb|ACU74511.1| excinuclease ABC, B subunit [Catenulispora acidiphila DSM 44928] Length = 703 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/687 (52%), Positives = 483/687 (70%), Gaps = 28/687 (4%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 ++ + ++ +DY P+GDQPAAIA+L + I + E+ +LLG TG+GK+ T A +IE +QR Sbjct: 8 TRTVAPIEVVSDYQPAGDQPAAIAELTRRIEAGEQNVVLLGATGTGKSATTAWLIEKLQR 67 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+ Sbjct: 68 PTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEE 127 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 ++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y + VQ+++G+ ++ ++L V Sbjct: 128 VERLRHSTTNSLLTRRDVVVVSTVSCIYGLGTPEEYLKSSVQIRVGEEHDRDKMLRRFVD 187 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D+ RGTFRV GD++EIFP + E+ R+ MFG+++E + +P+TG+ + Sbjct: 188 MQYARNDLAFTRGTFRVRGDTVEIFPVY-EEHPVRIEMFGDEVERLMTLHPVTGEILTVD 246 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 E ++++ +HYV + A+ I+ EL RL ELEK+G+LLEAQRL R TYDLEM+ Sbjct: 247 EELRVFPATHYVAGSDRMERALGGIETELADRLAELEKQGKLLEAQRLRMRTTYDLEMMR 306 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G IENYSR++ GR PG PP TL ++ PED LL +DESHVT+PQI M+ GD RK Sbjct: 307 QVGFTSGIENYSRHIDGREPGSPPSTLIDFFPEDFLLVIDESHVTVPQIGAMHEGDASRK 366 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL----EQCQGIIVEQIIR 550 TL E+GFRLPS +DNRPLR+EE+ T+ +SATPG +EL E+ VEQIIR Sbjct: 367 RTLVEHGFRLPSAIDNRPLRWEEFEERVGQTVYLSATPGPYELGKQGEETSKSPVEQIIR 426 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ E+ A++ R L+T LTK+M+EDLT+YL ER +R R Sbjct: 427 PTGLVDPQVVLKPTHGQIDDLVAEVQARAERNERSLVTTLTKKMSEDLTDYLLERGVRTR 486 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS S Sbjct: 487 YLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRS 546 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YADTIT S++LAIDET RRR+KQ+ +N+ + ++PQ ++++I Sbjct: 547 LIQTIGRAARNVSGEVHMYADTITPSMKLAIDETNRRRDKQIAYNEANGVDPQPLRKRIA 606 Query: 731 EVIDPILLEDAATTN-ISIDAQQLSLSK-------KKGKAH---------------LKSL 767 ++ D + EDA T + +Q S K KG ++ L Sbjct: 607 DITDLLAREDADTAELLGGSGRQQSRGKAPVPGVASKGTMRSLDVAGKPAEELLGLIEDL 666 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH AA L FE AAR RDEI LK Sbjct: 667 SQQMHAAAAELQFELAARFRDEIGELK 693 >gi|91203251|emb|CAJ72890.1| strongly similar to UvrABC system protein B (excinuclease ABC subunit B) [Candidatus Kuenenia stuttgartiensis] Length = 655 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 467/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQP AI +L++ Q LLGVTGSGKTFTMA VI A+ +P +VM Sbjct: 4 FELISPFEPEGDQPEAIRKLVENYRKNVTFQTLLGVTGSGKTFTMANVIAALGKPTLVMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP NAV YFVSYYDYYQPEAY+P+ D YIEKE++IN++IDR+R Sbjct: 64 HNKTLAAQLYSEFKDFFPKNAVGYFVSYYDYYQPEAYIPQRDIYIEKEATINQEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT L+ R D I+V+SVSCIYG+GS Y +M + L GD VE+ +L L+ QY+R Sbjct: 124 AATSVLMSRKDVIIVASVSCIYGLGSPAEYQEMYLHLSKGDEVERDTVLKKLISIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IE+FP++ E+ A+RV +FG+++++IS PLTG ++ ++ + +Y Sbjct: 184 DSHFRRGTFRVRGDVIEVFPAY-EEFAYRVELFGDEVDKISMIDPLTGNTLQKIKEVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + ++ I EL RL +L +LLEAQRLE R YD+EML G C Sbjct: 243 PAKHFVMPEEKIERVVQSITAELNDRLKDLRSRDKLLEAQRLEARTRYDIEMLLEIGYCH 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PGEPP TLF+Y P+D L VDESHV+ PQI+GMY GD RK TL EY Sbjct: 303 GIENYSRHISGRAPGEPPYTLFDYFPKDFFLIVDESHVSTPQIAGMYHGDRARKETLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+EW + VSATPG +EL++ Q IVEQIIRPTGLVDP + Sbjct: 363 GFRLPSALDNRPLRFDEWESRIKQILFVSATPGPYELKKSQNNIVEQIIRPTGLVDPIIY 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ A+TQV D+ EI + R L+T LTKR+AEDL+ YL E I+ Y+HSE+ +E Sbjct: 423 VKPAKTQVNDLITEIKKRTLRKERTLVTTLTKRLAEDLSGYLKEEGIKCMYLHSEINAIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+R+LR+G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGR AR Sbjct: 483 RVTILRELRMGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRTAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN++VILY D ITKS++ AIDET RRR Q +NK+HNI P +++++I + I+ + Sbjct: 543 NVNAEVILYGDEITKSMRRAIDETNRRRAIQSAYNKEHNITPATIQKEIKKGIESYI--- 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ I +A S + + +L L +M AA+ L FE AA +RD+I++LK S Sbjct: 600 -SSHKIVYEAVAESEEEYITQEYLNELEAEMLKAAEELAFERAAELRDKIQQLKKS 654 >gi|166366874|ref|YP_001659147.1| excinuclease ABC subunit B [Microcystis aeruginosa NIES-843] gi|189037983|sp|B0JR86|UVRB_MICAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|166089247|dbj|BAG03955.1| excinuclease ABC subunit B [Microcystis aeruginosa NIES-843] Length = 667 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/667 (54%), Positives = 470/667 (70%), Gaps = 18/667 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ+Q + P+GDQPAAI QL+ + ++ + Q LLG TG+GKTFT+A VIE + RP + Sbjct: 1 MTAFQLQAPFQPTGDQPAAIDQLVDSLQNQHRFQTLLGATGTGKTFTIAAVIEKIGRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID Sbjct: 61 VLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + L +G +Q++LL +LV QY Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAISLTVGQEFDQRQLLRALVSVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FR+ GD +EI P++ ED ++ FG++IE I PLTG+ ++ +E I Sbjct: 181 NRNDLELTRGRFRLKGDILEIVPAY-EDRVIKIDFFGDEIESIRYLDPLTGEVLQKLERI 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A + IK EL RL+ELEK G+LLEAQRL+QR YDLEML+ G Sbjct: 240 SIYPARHFVTPEERLEVACRDIKTELDNRLLELEKAGKLLEAQRLDQRTRYDLEMLQEVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR GEPP L +Y PED LL VDESHV++PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRLAGEPPECLVDYFPEDWLLVVDESHVSVPQIRGMYNGDQSRKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS DNRPL+ EE+ I VSATPG WELEQ + IVEQIIRPTG++DP Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVNQCIFVSATPGDWELEQSENRIVEQIIRPTGVLDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R QV+D+ EI Q R+L+T LTKRMAEDLTEYL ER I+VRY+HSE++ Sbjct: 420 EIFVRPTEGQVDDLLGEIKERVQLNERVLITTLTKRMAEDLTEYLQERGIKVRYLHSEIQ 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +++RIEII+DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGR Sbjct: 480 SIQRIEIIQDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR++ + ILY D +T S+ AI+ET RRR Q E+N+KH I PQ + ++ I Sbjct: 540 AARHIRGQAILYGDNLTDSMINAIEETKRRRAIQQEYNQKHGIIPQPIVKRSSNSI---- 595 Query: 738 LEDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 A +IS +++QQL LS ++ ++ L QM AA NL FE AA+ R Sbjct: 596 ---LAFLDISRRLNSQQLEQVCENIEELSLEQIPELIQQLEAQMKEAAKNLEFESAAKYR 652 Query: 788 DEIKRLK 794 D IK+L+ Sbjct: 653 DRIKQLR 659 >gi|241889975|ref|ZP_04777273.1| excinuclease ABC subunit B [Gemella haemolysans ATCC 10379] gi|241863597|gb|EER67981.1| excinuclease ABC subunit B [Gemella haemolysans ATCC 10379] Length = 666 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/662 (54%), Positives = 466/662 (70%), Gaps = 18/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ Y P GDQ AIA+L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A Sbjct: 10 FDLQSKYDPKGDQINAIAELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + +++ L+ QY R Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKIMEKLISIQYMRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEIFP+ + + R+ MFG++I+ I E PLTG+ + +E I IY Sbjct: 190 DIEFTRGNFRVRGDVIEIFPASRSENSVRIEMFGDEIDRIREINPLTGEVLSELEHIAIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V A+K I+ EL+ RL L E +LLEAQRLEQR YDLEM+E G C Sbjct: 250 PASHFVAGDEKTKEAIKRIRAELEERLKVLNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R PG P TL +Y P+D LL VDESHVT+PQ+ GM+ GD RK L +Y Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPDDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL FEE+ I VSATPG +ELE I EQIIRPTGL+DP ++ Sbjct: 370 GFRLPTALDNRPLNFEEFEKKLNQAIFVSATPGDFELENSTK-ITEQIIRPTGLLDPIID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV D+ E +G R+L+T LTK+MAE LT YL E ++V Y+HS++KTLE Sbjct: 429 IRPVSDQVFDITKEAEKIIAKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFD+L+GINLLREGLDIPE LVAILDADKEGFLR +L+QTIGRAAR Sbjct: 489 RTEIIRNLRLGKFDILIGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGITPQTIIKDIRDSISAKKEVI 608 Query: 734 -DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D +LE TTNI+ D + HL L +QM AA+ FE+AA++RD I Sbjct: 609 NDEEILELEETTNINDDNIE---------EHLAELEQQMFTAAEKFEFEQAAKLRDTIAE 659 Query: 793 LK 794 LK Sbjct: 660 LK 661 >gi|332670360|ref|YP_004453368.1| excinuclease ABC subunit B [Cellulomonas fimi ATCC 484] gi|332339398|gb|AEE45981.1| excinuclease ABC, B subunit [Cellulomonas fimi ATCC 484] Length = 701 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/689 (52%), Positives = 483/689 (70%), Gaps = 27/689 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + FQ+ +++ PSGDQPAAIA+L I++ EK +LLG TG+GK+ T A +IE Sbjct: 4 VTELQRTVAPFQVVSEFTPSGDQPAAIAELASRINAGEKDVVLLGATGTGKSATTAWLIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS Sbjct: 64 QVQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIVQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V L +G +++ +LL Sbjct: 124 INDEVERLRHSATSSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVTLDVGQQIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V+ QY R D+ RGTFRV GD++EI P + E++A R+ FG++IE I+ +PLTG Sbjct: 184 RFVQMQYTRNDLAFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEAIATLHPLTGDV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +R+ + + I+ +HYV + A+ I+ EL+ RL ELE + +LLEAQRL R TYD+ Sbjct: 243 VRSEDQMMIFPATHYVAGPERMERAIAGIELELEDRLAELESQNKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYSR++ GR G P TL ++ PED LL +DESHVT+PQI M+ GD Sbjct: 303 EMMRQIGSCSGIENYSRHIDGRTAGSAPNTLLDFFPEDFLLVIDESHVTVPQIGAMFEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L E+GFRLPS DNRPLR+EE+ T+ +SATPG +EL G+ VEQIIR Sbjct: 363 MSRKRALVEHGFRLPSATDNRPLRWEEFVERIGQTVYLSATPGDYELSMADGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ + Q++D+ EI+ ++ R+L+T LTK+MAEDLT+Y E+ +RVR Sbjct: 422 PTGLVDPEVVVKPTKGQIDDLLGEIHDRVERDERVLVTTLTKKMAEDLTDYFLEKGVRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS S Sbjct: 482 YLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGKS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT ++QLAI+ET+RRREKQ+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMQLAIEETSRRREKQIAYNTERGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNISIDA-QQLSLSK-------KKGKAH-----------------LK 765 ++ D + EDA T + A +Q S K KG ++ Sbjct: 602 DITDLLAREDADTAELLGGAGRQASRGKAPVPGFGSKGAPRDERTRLTGAAAGELAGLIQ 661 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L QMH AA L FE AAR+RDEI LK Sbjct: 662 ELTDQMHAAAGELQFELAARLRDEISGLK 690 >gi|290961294|ref|YP_003492476.1| ABC excision nuclease subunit B [Streptomyces scabiei 87.22] gi|260650820|emb|CBG73937.1| ABC excision nuclease subunit B [Streptomyces scabiei 87.22] Length = 709 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/696 (51%), Positives = 479/696 (68%), Gaps = 34/696 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + ++ + Y PSGDQP AIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERTVAPLEVVSSYQPSGDQPTAIAELARRIGAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V L++G+ ++ ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGEEFDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + + ++ SHYV L A I++EL RL ELEK+G+LLEAQRL R TYDL Sbjct: 243 ISDDQQLYVFPASHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC +ENYS + GR PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-HVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT ++ AIDET RRREKQ+ +NK H I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADRITPAMAKAIDETNRRREKQVAYNKAHGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKA---------------------------- 762 +++ I ED T + + K KA Sbjct: 602 DIVARIAREDVDTEQLLGTGYRQQKDGKAAKAPVPALKGRAAGAARGAAKDAGPTDRPAA 661 Query: 763 ----HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++M AA +L FE AAR+RDE+ +K Sbjct: 662 ELAQQIEEMTQRMRAAAADLQFEIAARLRDEVSEMK 697 >gi|87309481|ref|ZP_01091616.1| excinuclease ABC subunit B [Blastopirellula marina DSM 3645] gi|87287789|gb|EAQ79688.1| excinuclease ABC subunit B [Blastopirellula marina DSM 3645] Length = 687 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/663 (53%), Positives = 475/663 (71%), Gaps = 18/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q + P+GDQPAAI QL++G+ + + Q+LLGVTGSGKT+T+A VI+ +QRPA+V++ Sbjct: 3 FELQAPFAPAGDQPAAIEQLVEGLRAERRHQVLLGVTGSGKTYTVANVIQQLQRPALVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R Sbjct: 63 HNKTLAAQLYSEFKEFFPHNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDRLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 ++T +L+ R D I+V+SVS IYG+GS Y M+V + G +++ E+L LV Y+R Sbjct: 123 ASTSALVSRRDVIIVASVSSIYGLGSPSDYKAMMVSIAKGQMIDRDEVLGRLVGILYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R FRV GD IEI+PS+ E+ A+R+ ++G+++E++S PLTG+ I E + IY Sbjct: 183 DVAFERSKFRVRGDCIEIWPSY-EEFAYRIELWGDEVEQLSIINPLTGEVIAPQEQLYIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + A+ IK EL RL ELE G+LLEAQRL R +D+EM++ G C Sbjct: 242 PAKHFVLPEERVAKAVVDIKHELAARLQELESAGKLLEAQRLNARTRFDIEMMQEVGFCP 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG P TL+++ P+D LLFVDESHVTI QI MY GD RK L E+ Sbjct: 302 GIENYSRPLSGRPPGSAPSTLYDFFPKDFLLFVDESHVTISQIRAMYHGDRSRKMNLVEH 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP +F+EW + + VSATPG +ELE+ G +VEQIIRPTGL+DP VE Sbjct: 362 GFRLPSALDNRPFKFDEWENIVNQAVFVSATPGDYELEKAGGEVVEQIIRPTGLLDPVVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ AR QV+ + ++I R+L+TVLTKR+AEDL YL E+ I +++HSE+ E Sbjct: 422 LQPARGQVQHLLEQIRERVAVKERVLVTVLTKRLAEDLANYLSEQGIACKWLHSELDAFE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++RDLR GKFD LVGINLLREGLD+PE LV ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RVELLRDLREGKFDCLVGINLLREGLDLPEVSLVGILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN+KVILYAD +T S+Q AIDET RRR+ Q E+N+KH I P+S+K+ I I+ D Sbjct: 542 NVNAKVILYADRMTNSMQAAIDETDRRRKIQQEYNEKHGITPESIKKNIRRGIE----ND 597 Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A A + DA+ ++L ++ L+ +M AA+NL FE AA IRD I ++ Sbjct: 598 ADAHRTASAAVGKTDDAEYITLE------YISELQTEMLAAAENLEFERAAGIRDRITKM 651 Query: 794 KSS 796 + S Sbjct: 652 QDS 654 >gi|108799967|ref|YP_640164.1| excinuclease ABC subunit B [Mycobacterium sp. MCS] gi|119869079|ref|YP_939031.1| excinuclease ABC subunit B [Mycobacterium sp. KMS] gi|108770386|gb|ABG09108.1| Excinuclease ABC subunit B [Mycobacterium sp. MCS] gi|119695168|gb|ABL92241.1| Excinuclease ABC subunit B [Mycobacterium sp. KMS] Length = 719 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/690 (52%), Positives = 483/690 (70%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP ++MA Sbjct: 28 FEVVSPYQPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLLMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+LK+GD V + LL LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDALLRLLVDVQYARN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R V++++++ Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEYFGDEVEALYYMHPLTGDVVRRVDSLRVF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I++EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMAQAISSIEKELEDRLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFASRIGQTVYLSATPGPYEMSQSGGEFVEQVIRPTGLVDPQVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIGEIRKRTELDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N++ I+P+ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEERGIDPKPLRKKIADILDQVYREA 626 Query: 740 -DAATTNISIDAQQLSLSKKK----GKA---------------------HLKSLRKQMHL 773 D+ T + + S ++ G+A +K L +QM Sbjct: 627 DDSETVEVGGSGRNASRGRRAQGEPGRAVSAGIVEGRDTANMPRAELADLIKDLTEQMMT 686 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AARIRDEI+ LK +G+D Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714 >gi|319939262|ref|ZP_08013625.1| UvrABC system protein B [Streptococcus anginosus 1_2_62CV] gi|319811658|gb|EFW07934.1| UvrABC system protein B [Streptococcus anginosus 1_2_62CV] Length = 662 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/659 (53%), Positives = 476/659 (72%), Gaps = 12/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI+ + +P +V+A Sbjct: 10 FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDQLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I+ EL+ +L E+EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFMTNDENMEIAIGKIQAELEEQLAFFEREGKLLEAQRLKQRTDYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEREQTDTVI-EQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN A++ R +T LTK+MAEDLT+Y E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQIDDLLGEINARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S+Q A++ET RRR+ Q+ +N++H I PQ+++++I ++I Sbjct: 549 NSEGHVIMYADTITDSMQKAMNETARRRQIQMAYNEEHGIVPQTIQKEIRDLI------- 601 Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T D +++ +L+K++ K +K L QM AA L+FE AA+IRD I +K+ Sbjct: 602 SVTKAALPDKEEVVDIENLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660 >gi|257882916|ref|ZP_05662569.1| excinuclease ABC [Enterococcus faecium 1,231,502] gi|294621568|ref|ZP_06700734.1| excinuclease ABC, B subunit [Enterococcus faecium U0317] gi|257818574|gb|EEV45902.1| excinuclease ABC [Enterococcus faecium 1,231,502] gi|291598873|gb|EFF29924.1| excinuclease ABC, B subunit [Enterococcus faecium U0317] Length = 664 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/656 (53%), Positives = 472/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +IE + +P +++A Sbjct: 10 FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IV++SVSCI+G+GS Y + +V ++ G +++ +L+ LV Q++R Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG+++E I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IKEEL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNDEHMEHAVANIKEELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +E EQ +I +QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S++LA+DET+RRR Q ++N++H I P+++ ++I ++I I E Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T ++ ++K++ L L K+M AA L+FE AA +RD I LK+S Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663 >gi|163752020|ref|ZP_02159229.1| excinuclease ABC subunit B [Shewanella benthica KT99] gi|161328072|gb|EDP99241.1| excinuclease ABC subunit B [Shewanella benthica KT99] Length = 637 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/630 (55%), Positives = 465/630 (73%), Gaps = 6/630 (0%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 LLGVTGSGKTFT+A VI+ + RP I+MAPNK LAAQLY E K FFPHNAVEYFVSYYDYY Sbjct: 4 LLGVTGSGKTFTIANVIKQIGRPTIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYY 63 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVP T+T+IEK++S+N I++MR SAT++LLER D ++++SVS IYG+G +SY + Sbjct: 64 QPEAYVPSTNTFIEKDASVNAHIEQMRLSATKALLERKDVVLIASVSAIYGLGDPKSYLK 123 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 M++ L+ GD + Q+++L L + QY R DI + RGTFRV G+ I+IFP+ + A RV + Sbjct: 124 MLLHLRQGDFMGQRDILLRLSELQYTRNDISLERGTFRVRGEVIDIFPADSDKHAIRVEL 183 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 F ++IE +S F PLTG+ I+ + I +Y SHYVTPR + A + IK+EL R +L Sbjct: 184 FDDEIERLSMFDPLTGRIIKRIARISVYPKSHYVTPREKIVAATEEIKKELIERKQQLLD 243 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 +L+EAQR+ +R+ YDLEM+ G C IENYSRYL+GR G+ PPTL +Y+P+D LL Sbjct: 244 NNKLVEAQRISERVQYDLEMMVELGYCSGIENYSRYLSGRATGKGPPTLLDYLPDDGLLI 303 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 +DESHVT+PQI MY+GD RK L EYGFRLPS +DNRPL+FEE+ L P TI VSATP Sbjct: 304 IDESHVTVPQIGAMYKGDRSRKLNLVEYGFRLPSALDNRPLKFEEFEDLMPQTIFVSATP 363 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 +E+++C G I EQ++RPTGL+DP VE+R TQ++D+ +I + R+L+T LTK Sbjct: 364 SQYEIDKCDGEIAEQVVRPTGLLDPEVEVRPVGTQIDDLLSQIGKRIKVNERVLVTTLTK 423 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RM+EDL+EYL E I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE Sbjct: 424 RMSEDLSEYLDEHGIKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVS 483 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LV ILDADKEGFLRS+ SLIQT+GRAARN+N KVILYAD ITKS+ A+ ET RRR+ Q Sbjct: 484 LVCILDADKEGFLRSERSLIQTMGRAARNINGKVILYADRITKSMAAAMGETDRRRKMQH 543 Query: 713 EHNKKHNINPQSVKEKIMEVI-----DPILLEDAATTNISIDAQQLSLSKKKGKAH-LKS 766 ++N + I P V +KI +V+ D +L D ++ N++ + + + +H + + Sbjct: 544 QYNLDNGITPTGVVKKITDVMDVGERDKGILGDYSSLNVAENRAKYVVQDAASISHQIDA 603 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 L KQMH A NL FE+AA +RD++ +L+ + Sbjct: 604 LEKQMHEHAKNLEFEQAAAVRDQVLKLRDA 633 >gi|294791677|ref|ZP_06756825.1| excinuclease ABC subunit B [Veillonella sp. 6_1_27] gi|294456907|gb|EFG25269.1| excinuclease ABC subunit B [Veillonella sp. 6_1_27] Length = 725 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/685 (53%), Positives = 482/685 (70%), Gaps = 36/685 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L +GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFAPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G + + E+LS LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+I+IFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + +N A++ I+ EL +L +L+ RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVT+PQI MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E + I EQIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q AIDET RRR Q +N +HNI P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTNISIDAQQLSLSKK------KGKAH-------------------------LKSLRK 769 T D + LS K +G H ++ L + Sbjct: 613 DMVT----DGKGLSSKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELDR 668 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QM AA L FE AA++RD++ L+ Sbjct: 669 QMKAAAKQLEFETAAKLRDQLGVLR 693 >gi|302023818|ref|ZP_07249029.1| excinuclease ABC subunit B [Streptococcus suis 05HAS68] Length = 661 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/659 (53%), Positives = 478/659 (72%), Gaps = 12/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEF FP NAVEYFVSY DYYQPEAYVP +DTYIEK+SS N++ID++RH Sbjct: 70 HNKTLAGQLYSEFNALFPQNAVEYFVSYSDYYQPEAYVPSSDTYIEKDSSSNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL+SLV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNSLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + +V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + TA+ I+ EL+ +L E EG+LLEAQRL+QR YD+EML G Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L Y Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+EQ +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLLDPEVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++G R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI------- 601 Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + T ++ D +++ +L+K + KA +K L QM AA+ L+FE AA+IRD + LK+ Sbjct: 602 SVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660 >gi|260439329|ref|ZP_05793145.1| excinuclease ABC subunit B [Butyrivibrio crossotus DSM 2876] gi|292808339|gb|EFF67544.1| excinuclease ABC subunit B [Butyrivibrio crossotus DSM 2876] Length = 661 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/656 (54%), Positives = 466/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +L+KG + ++ Q LLGVTGSGKTFTMA VIE + RP +V+A Sbjct: 4 FILHSEYEPTGDQPEAIKELVKGFEAGDQFQTLLGVTGSGKTFTMANVIEKLNRPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y M+V L+ G ++ +++ L+ QY R Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYKSMVVSLRPGMERDRDDIIRQLIDMQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP+ + +A RV FG++I+ I E LTG+ ++ I+ Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAASDKIAVRVEFFGDEIDRILEIDTLTGEIKSELKHTAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ L A + I+ ELK ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVPKEKLLIAAENIRAELKEQVDYFKSEDKLLEAQRISERTNFDVEMMLETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PG P TL +Y PED L+ VDESH+TIPQI GMY GD RK TL +Y Sbjct: 304 GIENYSRHLEGRAPGTMPCTLMDYFPEDFLIIVDESHITIPQIRGMYFGDRSRKTTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E VEQIIRPTGL+DP + Sbjct: 364 GFRLPSALDNRPLNFEEFESKINQMMFVSATPSVYEAEHELN-RVEQIIRPTGLLDPEIS 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++L+T LTKRMAEDLT YL E +RVRY+HS++ TLE Sbjct: 423 VRPVTGQIDDLLSEVNKETAGKNKVLITTLTKRMAEDLTIYLKENGVRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+R+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD +T S++ AIDET RRR+ Q E+N+ H I P ++K+ + ++I + Sbjct: 543 NADGRVIMYADNMTDSMRKAIDETERRRKIQQEYNEAHGITPTTIKKAVRDLIAISKAAN 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 I D + S+S K+ + +K L K+MH AA +LNFEEAA IRD+I ++ + Sbjct: 603 DKGDKIKKDIE--SMSDKELEKLIKELNKKMHRAAADLNFEEAALIRDQITEIRKT 656 >gi|269956328|ref|YP_003326117.1| excinuclease ABC subunit B [Xylanimonas cellulosilytica DSM 15894] gi|269305009|gb|ACZ30559.1| excinuclease ABC, B subunit [Xylanimonas cellulosilytica DSM 15894] Length = 701 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/696 (51%), Positives = 484/696 (69%), Gaps = 41/696 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ ++Y PSGDQP AIAQL + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VTDLQRTVAPFEVISEYTPSGDQPTAIAQLTERIQAGEKDVVLLGATGTGKSATTAWLIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V+L +GD V++ +LL Sbjct: 124 INDEVERLRHSATSSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLDVGDVVDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V+ QY R D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTG Sbjct: 184 RFVQMQYTRNDVAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIEAIQTLHPLTGDV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +R+ +++ ++ +HYV + A+ I++EL+ RL LEK+ +LLEAQRL R TYD+ Sbjct: 243 VRDEKSVYLFPATHYVAGPERMERAIAGIEKELEERLAVLEKQNKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS ++ GR PG PP TL +Y PED LL +DESHVT+PQI M+ GD Sbjct: 303 EMMRQIGSCSGIENYSLHIDGREPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMFEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L E+GFRLPS MDNRPLR+EE+ T+ +SATPG +E G +VEQIIR Sbjct: 363 MSRKRALVEHGFRLPSAMDNRPLRWEEFVERIGQTVYLSATPGEYETSLSDG-VVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E+ I+V+ Sbjct: 422 PTGLVDPEVIVKPTTGQIDDLLHEIRERVERDERVLVTTLTKKMAEDLTDYFLEKGIKVQ 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS S Sbjct: 482 YLHSDVDTLRRVELLRELRLGQFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSARS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT ++ +A++ETTRRREKQ+ +N H ++P +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMAIALEETTRRREKQIAYNTAHGVDPTPLRKKIA 601 Query: 731 EVIDPILLEDAATTNISIDAQQL------SLSKKKGKAHL-------------------- 764 +V D + ED ID QQL ++++ KA L Sbjct: 602 DVTDMLARED-------IDTQQLLAGGYRKPAERRAKAPLPGSPKEGATTGNRLAGVAAG 654 Query: 765 ------KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L QMH AA L FE AAR+RDEI LK Sbjct: 655 ELAELIQELSDQMHAAAAELQFEVAARLRDEISGLK 690 >gi|32141151|ref|NP_733553.1| excinuclease ABC subunit B [Streptomyces coelicolor A3(2)] gi|81842342|sp|Q8CK11|UVRB_STRCO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|24419016|emb|CAD55287.1| ABC excision nuclease subunit B [Streptomyces coelicolor A3(2)] Length = 712 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/699 (51%), Positives = 487/699 (69%), Gaps = 37/699 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQP AIA+L + + + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERTVAPFEVVSPYQPSGDQPTAIAELARRVQAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V L++G+ ++ ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEHDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +P+TG+ Sbjct: 184 RFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPVTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + ++ SHYV L A+ I++EL RL ELEK+G+LLEAQRL R TYD+ Sbjct: 243 ISEDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC +ENYS + GR+PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGAYELSRSDG-AVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ NK + ++PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSK-KKGKA-------- 762 +++ I ED T + ++ Q+ +K +G+A Sbjct: 602 DIVAQIAREDVDTEQLLGSGYRQTKEGKGAKAPVPALGGQKTGGAKAARGRAKETAVTDR 661 Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +M AA +L FE AAR+RDE+ +K Sbjct: 662 PAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMK 700 >gi|94968809|ref|YP_590857.1| excinuclease ABC subunit B [Candidatus Koribacter versatilis Ellin345] gi|94550859|gb|ABF40783.1| Excinuclease ABC subunit B [Candidatus Koribacter versatilis Ellin345] Length = 662 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/662 (53%), Positives = 474/662 (71%), Gaps = 9/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ + Y P GDQ AI QL GI EK Q+LLGVTGSGKTFTMAK+IE + RPA+++A Sbjct: 3 LKVSSPYKPQGDQARAIEQLTGGIRDGEKHQVLLGVTGSGKTFTMAKIIEQLNRPALILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAY+P D YIEKE+++N+++D++R Sbjct: 63 HNKTLAAQLYHEFKNFFPNNAVEYFVSYYDYYQPEAYIPAGDVYIEKEATVNDELDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATRSL ER D I+V+SVSCIYG+GS E+Y M++ L+ G +++ ++L LV+ Y+R Sbjct: 123 AATRSLFERRDVIIVASVSCIYGLGSPEAYYGMLLFLEKGQRIKRDDILKKLVEILYERT 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RGTFRV GD IEIFP++ ED A+R+ MFG+++E +S+ PL G + + + IY Sbjct: 183 NEDFRRGTFRVRGDVIEIFPTY-EDTAYRIEMFGDEVESLSQIDPLFGTVKQKYQRLPIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV N+A+ I EEL EL+K+GRL+E+QR+ QR +DLEM++ G C Sbjct: 242 PKTHYVMKPERKNSAVTTILEELGWWENELQKQGRLVESQRIHQRTRFDLEMIKEMGYCH 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TGR PGEPPPTL +Y+P + LLF+DESH T+PQ+ GM+ GD RK L EY Sbjct: 302 GIENYSRHFTGRLPGEPPPTLLDYMPREFLLFIDESHQTVPQLHGMWHGDRSRKENLIEY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +EL + G++VEQIIRPTGL+DP VE Sbjct: 362 GFRLPSALDNRPLTFEEFENRVNQAVYVSATPGPYELTKAAGVVVEQIIRPTGLIDPEVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI A++ R+L+T LTKRMAEDL+EY E +R RYMHSE++TLE Sbjct: 422 VRPVKGQIDDLLHEIRKRAEKRERVLVTTLTKRMAEDLSEYYTEVGVRCRYMHSEIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+RDLR G+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GR AR Sbjct: 482 RIKILRDLRKGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTMGRCAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ + ILYAD +T S++ A+DET RRR Q +N +H I P+S I+ +D L Sbjct: 542 NLEGRAILYADRMTDSMKKAMDETYRRRAIQEAYNVEHGITPES----IVRPVDMALAAI 597 Query: 741 AATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + AQ + + K + L + L +M AA FE+AA++RD+IK L++ Sbjct: 598 VGADYVDLTAQPDEIPEFKSQEQLDKFVEKLEGEMREAAKRFEFEKAAKLRDQIKELRTK 657 Query: 797 PY 798 + Sbjct: 658 EF 659 >gi|160934320|ref|ZP_02081707.1| hypothetical protein CLOLEP_03191 [Clostridium leptum DSM 753] gi|156866993|gb|EDO60365.1| hypothetical protein CLOLEP_03191 [Clostridium leptum DSM 753] Length = 658 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/664 (54%), Positives = 476/664 (71%), Gaps = 8/664 (1%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 N+ D F++ + Y P+GDQP AIA+L++GI +K Q LLGVTGSGKTFTMA +I+ + Sbjct: 2 NNQNDKELFKLVSTYKPTGDQPEAIAKLVEGIKRGDKEQTLLGVTGSGKTFTMANIIQQV 61 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 QRP +V+A NK LAAQL SEF+ FFP ++VEYFVSYYDYYQPEAY+ TDTYIEK+S+IN Sbjct: 62 QRPTLVLAHNKTLAAQLCSEFREFFPESSVEYFVSYYDYYQPEAYIATTDTYIEKDSAIN 121 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ID++RHSAT +L ER D I+V+SVSCIY +G+ Y M++ L+ G + ELL L Sbjct: 122 DEIDKLRHSATSALSERRDVIIVASVSCIYSLGNPIDYRTMVISLRPGMQKNRDELLKKL 181 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V+ QY+R DI IR FRV GD +EIFP+ D A RV FG++++ ISEF PLTG+ Sbjct: 182 VELQYERNDINFIRNKFRVRGDVVEIFPAQSNDTAVRVEFFGDEVDRISEFNPLTGEIKA 241 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 +++ I IY SHY+ P+ + A++ I++EL+ RL +EG+LLEAQR+EQR YD+EM Sbjct: 242 DLKHIAIYPASHYIVPKEKMKEAIQEIEQELEERLAYFRREGKLLEAQRIEQRTRYDIEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L+ G C+ IENYSR + GR PG P TL +Y P+D LLFVDESHVT+PQ+ GMY GD Sbjct: 302 LQEIGFCKGIENYSRVMAGREPGSAPFTLLDYFPKDYLLFVDESHVTLPQVRGMYAGDRA 361 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK +L EYGFRLPS DNRPL F+E+ + VSATPG E E+ IVEQ+IRPT Sbjct: 362 RKESLIEYGFRLPSAYDNRPLNFDEFYQRINQAVFVSATPGDLEREKSTQ-IVEQVIRPT 420 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GL+DP + ++ Q++D+ EINL +G R+L+T LTK+MAEDLT YL IRVRYM Sbjct: 421 GLLDPEIIVKPTEGQIDDLISEINLRVAKGNRVLVTTLTKKMAEDLTSYLEGMGIRVRYM 480 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE LV ILDADKEGFLRS SLI Sbjct: 481 HHDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVVILDADKEGFLRSDRSLI 540 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN +VI+YAD +T S++ AI ET RRR+ Q+ +N++H I P+++ +K+ EV Sbjct: 541 QTIGRAARNAEGQVIMYADQVTPSMETAIRETQRRRDIQMRYNQEHGITPKTIVKKVAEV 600 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +D + L+K + + ++ L K+M AA L FE AA +RD IK+ Sbjct: 601 LEISSHKDDKKSG-------KRLTKLERQQLIEQLTKEMKAAAKLLEFEHAAYLRDRIKK 653 Query: 793 LKSS 796 L+S Sbjct: 654 LQSG 657 >gi|227537637|ref|ZP_03967686.1| excision endonuclease subunit B [Sphingobacterium spiritivorum ATCC 33300] gi|227242523|gb|EEI92538.1| excision endonuclease subunit B [Sphingobacterium spiritivorum ATCC 33300] Length = 677 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/669 (51%), Positives = 488/669 (72%), Gaps = 14/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+ G++ E Q LLGVTGSGKTFT+A VI+ Q+PA++++ Sbjct: 3 FKLTSEYQPTGDQPQAIKELVAGVNEGETYQTLLGVTGSGKTFTIANVIQETQKPALILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++ ++TYIEK+ +INE+I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLAINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + T SL+ R D +VVSSVSCIYG+G+ E +S+ I + +G ++ + L LV+ Y R Sbjct: 123 ATTSSLMSGRRDIVVVSSVSCIYGMGNPEDFSRSIFRFAVGTTISRNAFLHKLVEILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++++P++L D A RVS FG++I+E+S P++ + I +E + + Sbjct: 183 TTAEFKRGTFRVKGDTVDVYPAYL-DYAIRVSFFGDEIDELSAIDPVSAKTINKMEDLAL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VTP+ ++ I++EL R +LE EG++LEA+RLE+R+ YDLEM+ G C Sbjct: 242 FPANLFVTPKEKFTQSIWAIQDELMQRKTQLEDEGKMLEAKRLEERVNYDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PG P TL +Y P+D LL +DESHVTIPQ+ MY GD RK +L E Sbjct: 302 SGIENYSRFFDGRQPGMRPFTLLDYFPDDYLLVIDESHVTIPQLRAMYGGDRSRKVSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL F E+ L TI VSATPG +EL+Q +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLNFPEFESLTNQTIYVSATPGDYELQQTEGVVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A QV+D ++++ ++G R+L T LTKRMAE+LT+Y+ NI+VRY+HSEVKTL Sbjct: 422 EVRPAINQVDDFLEQVDKTIKEGGRVLATTLTKRMAEELTKYMTRLNIKVRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 482 ERVEILRGLRLGEFDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRSERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733 RN +VI+YAD +T S+++ IDET RRREKQ+++N++H+I P++V +E+IME V Sbjct: 542 RNDKGRVIMYADKMTDSMRITIDETNRRREKQMKYNEEHHITPRTVGKTREEIMEQTSVA 601 Query: 734 D------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D I +E T ++ D LS+K K +++ +K+M AA ++F EAA++R Sbjct: 602 DFNGMEPKIYVEPDPTVAVAADPVMQYLSEKDLKKAIETTKKRMEKAAKEMDFLEAAKLR 661 Query: 788 DEIKRLKSS 796 DE+ L+ + Sbjct: 662 DEMFSLEKA 670 >gi|332971677|gb|EGK10625.1| excision endonuclease subunit UvrB [Desmospora sp. 8437] Length = 675 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/656 (53%), Positives = 474/656 (72%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI L G+ + +K Q LLG TG+GKTFT+A I +P +V+A Sbjct: 20 FRLVSEFQPRGDQPKAIEMLTDGLLTGKKHQTLLGATGTGKTFTIAHTIARAGKPTLVIA 79 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH Sbjct: 80 PNKTLAAQLCGELKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 139 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS E Y +V L++G ++ +L LV QY+R Sbjct: 140 SATSALFERQDVIVVASVSCIYGLGSPEEYRSQVVSLRVGMEKDRNAVLRDLVDIQYERN 199 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +RGTFRV GD +EIFP+ + A RV FG++I+ I E LTG+ + + E I I+ Sbjct: 200 DMNFVRGTFRVRGDVLEIFPASRSEQAIRVEFFGDEIDRIREIDVLTGEILGDREHIAIF 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A+K I+ EL RL L+ + +LLEAQRLEQR YD+EM+ G C Sbjct: 260 PASHYVTRQEVMRRALKEIEAELDERLAVLKSQDKLLEAQRLEQRTRYDMEMMREVGFCS 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G+ GEPP TL +Y P+D L +DESHVT+PQ+ MY+GD RK L ++ Sbjct: 320 GIENYSRHLVGKKAGEPPYTLLDYFPDDFLTIIDESHVTVPQVGAMYKGDRARKEMLVDH 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ I VSATPG +EL + + EQIIRPTGL+DP + Sbjct: 380 GFRLPSAMDNRPLQFEEFEKRLHQVIYVSATPGPYELGKTPE-LTEQIIRPTGLLDPKIH 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+N ++ R+L+T LTK+MAEDLT+YL E I+V+Y+HS++KT+E Sbjct: 439 VRPIQGQIDDLIGEVNKRVERNERVLVTTLTKKMAEDLTDYLKEAGIKVQYLHSDIKTIE 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 499 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N N +VI+YAD +T+S+Q AI+ET RRR Q+ HN+KH I PQ++++ + EVI+ + E Sbjct: 559 NANGEVIMYADRVTESMQKAIEETERRRSVQIAHNEKHGITPQTIQKAVREVIEATKVAE 618 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ D ++ +S K+ + ++ L K+M AA +L FE AA +RD I LK+ Sbjct: 619 ENEAYQVAPDMEK--MSGKERRQLIEGLEKEMKQAARDLQFERAAELRDMILELKA 672 >gi|111017990|ref|YP_700962.1| excinuclease ABC subunit B [Rhodococcus jostii RHA1] gi|110817520|gb|ABG92804.1| excision nuclease ABC subunit B [Rhodococcus jostii RHA1] Length = 746 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/692 (52%), Positives = 482/692 (69%), Gaps = 33/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQPAAIA L + I++ EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 54 FEVVSDHKPAGDQPAAIADLERRINAGEKDVVLLGATGTGKSATTAWLIEKVQRPTLVMA 113 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+N+VEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 114 PNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 173 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY VQL++G V + LL LV QY R Sbjct: 174 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGVEVPRDALLRLLVDVQYTRN 233 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R V++++I+ Sbjct: 234 DLAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRKVDSVRIF 292 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+K I+ EL+ RL +LE +G+LLEAQRL R YDLEM++ G C Sbjct: 293 PATHYVAGPERMERAVKDIEAELEERLADLEGKGKLLEAQRLRMRTQYDLEMIKQVGFCS 352 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI MY GD RK L E+ Sbjct: 353 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 412 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 413 GFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKYELGQAGGEFVEQVIRPTGLVDPQVV 472 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 473 VKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 532 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 533 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 592 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N+K ++PQ +++KI +++D + E+ Sbjct: 593 NVSGQVHMYADKITDSMQHAIEETERRREKQIAYNEKMGVDPQPLRKKIADILDQV-YEE 651 Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771 A T +D + +G+ +K L QM Sbjct: 652 AEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVYEGRDTKSMPRAELADLVKELTNQM 711 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE A R+RDEI LK +G+D Sbjct: 712 MNAARDLQFELAGRLRDEIADLKKE--LRGMD 741 >gi|152966886|ref|YP_001362670.1| excinuclease ABC subunit B [Kineococcus radiotolerans SRS30216] gi|151361403|gb|ABS04406.1| excinuclease ABC, B subunit [Kineococcus radiotolerans SRS30216] Length = 708 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/685 (51%), Positives = 481/685 (70%), Gaps = 33/685 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AIA+L + +++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 14 FEVVSEFSPSGDQPTAIAELARRVNAGEQDVVLLGATGTGKSATTAWLIEQVQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH Sbjct: 74 PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VSCIYG+G+ + Y + LK+G ++++ ELL V +QY R Sbjct: 134 SATNSLLTRRDVVVVATVSCIYGLGTPQEYVDRMTALKVGMTMDRDELLRKFVGEQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A R+ FG++I+++ PLTG+ +R + + I+ Sbjct: 194 DLAFTRGTFRVRGDTVEIIPVY-EEHAIRIEFFGDEIDKLYTLNPLTGEVLREEQHVYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV L A+ I+ EL+ RL ELE++G+LLEAQRL R TYDLEML GSC Sbjct: 253 PASHYVAGPERLERAVGSIEAELEQRLAELEQQGKLLEAQRLRMRTTYDLEMLRQVGSCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R PG TL +Y PED LL +DESHVT+PQI GMY GD RK TL ++ Sbjct: 313 GIENYSRHFDNRPPGSASNTLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVDF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLR+EE+ T+ +SATPG +EL + +G +VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLRWEEFLERTGQTVYLSATPGKYELSRGKG-VVEQIIRPTGLVDPQVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L + R+L+T LTK+MAEDLT+Y ++ +RVRY+HS++ TL Sbjct: 432 VKPTKGQIDDLLHEIRLRTDKDERVLVTTLTKKMAEDLTDYFLDQGVRVRYLHSDIDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSL+QTIGRAAR Sbjct: 492 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATSLVQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AIDET RRREKQ+ +N++ ++P ++++I ++ D I ED Sbjct: 552 NVSGEVHMYADRITPSMAQAIDETNRRREKQVAYNRERGVDPMPLRKRIADITDLIARED 611 Query: 741 AATTN-ISIDAQQLSLSKKKGKAH------------------------------LKSLRK 769 A T ++ ++ +GKA ++ L Sbjct: 612 ADTAELLAAAQGGGGRAQSRGKAPTPGGGRTRKGAREEAGQSRPGLPQADLAQLIQELTD 671 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QMH AA L FE AAR+RDE+ LK Sbjct: 672 QMHSAAAELQFELAARLRDEVGDLK 696 >gi|147679073|ref|YP_001213288.1| excinuclease ABC subunit B [Pelotomaculum thermopropionicum SI] gi|146275170|dbj|BAF60919.1| helicase subunit of the DNA excision repair complex [Pelotomaculum thermopropionicum SI] Length = 692 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/655 (55%), Positives = 478/655 (72%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ++++Y P GDQP AIA L++G+ K Q+LLG TG+GKT+TMA+VI+A+QRPA+V+A Sbjct: 19 FQLKSEYVPKGDQPKAIAALVEGLQKGYKGQVLLGATGTGKTYTMAQVIQAVQRPALVLA 78 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN++ID++RH Sbjct: 79 PNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDEIDKLRH 138 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y +++ L+ G+ ++ +L LV QY+R Sbjct: 139 SATCALFERRDVIIVASVSCIYGLGDPEEYRTLVLSLRRGECYDRDAVLRKLVSIQYERN 198 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RG FRV GD +EIFP+ + A RV FG+++E + EF LTG+ + + I+ Sbjct: 199 DINFVRGKFRVRGDVLEIFPASATERAIRVEFFGDEVERLREFDVLTGEILGERAHVSIF 258 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T R + A+ I+ EL+ RL EL +G+LLEAQRLEQR +D+EM+ G C Sbjct: 259 PASHYATSRERMERAIASIEAELEERLAELRSKGKLLEAQRLEQRTRFDIEMMREMGFCS 318 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG+PP TL +Y PED ++F+DESHV +PQ+ GMY GD RK L E+ Sbjct: 319 GIENYSRHLTGREPGQPPYTLIDYFPEDFIMFIDESHVAVPQVGGMYEGDRSRKEALVEH 378 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ I VSATPG +EL+ +VEQIIRPTGLVDP + Sbjct: 379 GFRLPSAFDNRPLTFKEFMERINQVIYVSATPGPYELKNS-ARVVEQIIRPTGLVDPEIS 437 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI L ++G R+L+T LTK+MAEDLT+Y E ++VRY+HS++ T+E Sbjct: 438 VRPTRGQIDDLLGEIRLRVKRGERVLVTTLTKKMAEDLTDYFREVGVKVRYLHSDINTIE 497 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQTIGRAAR Sbjct: 498 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 557 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N + KVI+YAD IT S+ AI ET RRR Q+E+N++H I P++V++ + EVI+ E Sbjct: 558 NADGKVIMYADKITDSMSGAIRETERRRRIQMEYNRQHGITPETVRKAVREVIEATRAAE 617 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +S+ + K H+ +L K+M AA L FE AA++RD I L+ Sbjct: 618 PGAVYRAVPRTGGKKMSRAELKKHIAALEKEMREAARQLAFERAAQLRDMIIELR 672 >gi|312127512|ref|YP_003992386.1| excinuclease ABC subunit B [Caldicellulosiruptor hydrothermalis 108] gi|311777531|gb|ADQ07017.1| excinuclease ABC, B subunit [Caldicellulosiruptor hydrothermalis 108] Length = 661 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/663 (56%), Positives = 487/663 (73%), Gaps = 17/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L+ G + ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD +E+FP+ D A R+ FG++IE I+EF +TG+ I + I+ Sbjct: 184 DVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG PP TL +Y P+D ++F+DESHVTIPQ+ MY GD RK L EY Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL++ IVEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LT+YL + IRVRYMHS++ T+E Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+ Sbjct: 543 NVYGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIE------ 596 Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 AT +++ + ++ +++K++ + ++K L ++M A L FE+AA+IRD+I Sbjct: 597 -ATVSVAEEEEKYEVVEKDIVENMTKEEIEEYIKELEQEMKKHAIELEFEKAAKIRDKIF 655 Query: 792 RLK 794 LK Sbjct: 656 ELK 658 >gi|226360119|ref|YP_002777897.1| excinuclease ABC subunit B [Rhodococcus opacus B4] gi|226238604|dbj|BAH48952.1| UvrABC system protein B [Rhodococcus opacus B4] Length = 720 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/692 (52%), Positives = 481/692 (69%), Gaps = 33/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AIA L + I++ EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSDHKPAGDQPTAIADLERRINAGEKDVVLLGATGTGKSATTAWLIEKVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+N+VEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY VQL++G V + LL LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGVEVPRDALLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R V++++I+ Sbjct: 208 DLAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRKVDSVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+K I+ EL+ RL +LE +G+LLEAQRL R YDLEM++ G C Sbjct: 267 PATHYVAGPERMERAVKDIEAELEERLADLENKGKLLEAQRLRMRTQYDLEMIKQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI MY GD RK L E+ Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKYELGQAGGEFVEQVIRPTGLVDPEVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 447 VKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N+K ++PQ +++KI +++D + E+ Sbjct: 567 NVSGQVHMYADKITDSMQHAIEETERRREKQIAYNEKMGVDPQPLRKKIADILDQV-YEE 625 Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771 A T +D + +G+ +K L QM Sbjct: 626 AEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVYEGRDTKSMPRAELADLVKELTDQM 685 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE A R+RDEI LK +G+D Sbjct: 686 MNAARDLQFELAGRLRDEIADLKKE--LRGMD 715 >gi|119944840|ref|YP_942520.1| excinuclease ABC subunit B [Psychromonas ingrahamii 37] gi|189037988|sp|A1STV6|UVRB_PSYIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|119863444|gb|ABM02921.1| Excinuclease ABC subunit B [Psychromonas ingrahamii 37] Length = 670 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/661 (53%), Positives = 468/661 (70%), Gaps = 11/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI QL+ G+ S Q LLGVTGSGKTFT+A I + RP +++A Sbjct: 5 FQLVSQFSPAGDQPQAIEQLINGLKSGLAFQTLLGVTGSGKTFTLANAIAKLNRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +D++IEK+++IN I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSFIEKDAAINAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +Y QM++ L +G+ + +E+L LV QY R Sbjct: 125 SATKALLERKDVVLVASVSAIYGLGDPTAYLQMMLHLTVGEIISSREILQRLVDLQYNRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV G+ I+IFP+ E A R+ +F +++E+IS F PLTGQ I + + +Y Sbjct: 185 ETELSRGTFRVRGEVIDIFPADSEKEALRIELFDDEVEQISVFDPLTGQGIDKLARVTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+ IK EL R E ++ +LLE QR+ QR YD+EM+ G C Sbjct: 245 PKTHYVTPREQILKAVDAIKVELNERKKEFLEQNKLLEEQRISQRTLYDIEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ G+ PPTLF+Y+P+D+LL +DESHVT+PQI MY+GD RK L Y Sbjct: 305 GIENYSRYLSGRSEGQAPPTLFDYLPKDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + P TI VSATP +E+ + QG I+ Q+IRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFAEFEKIAPQTIYVSATPSDYEINKSQGEIIRQVIRPTGLLDPVIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EIN+ R+L+T LTKRMAEDLT+YL+E I+ RY+HS+V T+E Sbjct: 425 VRPVTTQVDDLLSEINIRLPLKERVLVTTLTKRMAEDLTDYLHEHGIKARYLHSDVNTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 485 RVEIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYA IT S+Q AI T RRE Q + N ++ I PQ + +++ +V+ L Sbjct: 545 NLNGKAILYAARITGSMQKAIKVTEDRRELQNKFNIENGIIPQGLSKQVNDVMQ---LGQ 601 Query: 741 AATTNISIDAQQLSLSKKKGKAH-----LKSL---RKQMHLAADNLNFEEAARIRDEIKR 792 ++ +++ K + H LK + KQM A NL FE+AA RDE+ + Sbjct: 602 KNLKKGNLKQGKVAEYKANYQIHSEQDILKQIALSEKQMFACAKNLEFEKAALFRDEVTK 661 Query: 793 L 793 L Sbjct: 662 L 662 >gi|86740331|ref|YP_480731.1| excinuclease ABC subunit B [Frankia sp. CcI3] gi|86567193|gb|ABD11002.1| Excinuclease ABC subunit B [Frankia sp. CcI3] Length = 714 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/682 (52%), Positives = 480/682 (70%), Gaps = 30/682 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ PSGDQPAAI +L + + + E +LLG TG+GK+ T A ++E +QRP +VMA Sbjct: 23 FQVVSDFSPSGDQPAAIDELARRVGAGESDVVLLGATGTGKSATTAWLVERLQRPTLVMA 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH Sbjct: 83 PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ + Y +V+L++GD +E+ LL V QY R Sbjct: 143 SATMNLLTRRDVVVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDLLLRRFVDVQYTRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EIFP + E++A RV MFG++IE ++ +PLTG+ + E I ++ Sbjct: 203 DLAFTRGTFRVRGDTVEIFPVY-EELAVRVEMFGDEIERLTYLHPLTGEVVSEAEEIYVF 261 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL RL +E++GRLLEAQRL R TYD+EM+ G C Sbjct: 262 PATHYVAGPERMERAIAGIEAELAERLATMERQGRLLEAQRLRMRTTYDIEMMRQVGFCS 321 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G PP TL +Y P+D LL +DESH T+PQI GMY GD RK L E+ Sbjct: 322 GIENYSRHIDGREAGSPPHTLLDYFPDDFLLVIDESHNTVPQIGGMYEGDMSRKRNLVEH 381 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLR+EE+ T+ +SATPG +EL + G +VEQIIRPTGL+DP V Sbjct: 382 GFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGRSVG-VVEQIIRPTGLLDPEVV 440 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L A++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 441 LKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 500 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++ +LR G+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 501 RVELLTELRRGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAAR 560 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N + ++PQ +++K+++++D ++ + Sbjct: 561 NVSGQVHMYADAITPSMRRAIDETNRRREKQIAYNTERGLDPQPLRKKVVDILDDMVRQS 620 Query: 741 AATTNI--------SIDAQQLSLSKKKGK---------------AH-----LKSLRKQMH 772 A I A + + G+ +H ++ L QMH Sbjct: 621 ADGELIGGGGRSQSRGKAPVPGMKSRAGREGAVGRYAAELAGLPSHELAQLIRQLDDQMH 680 Query: 773 LAADNLNFEEAARIRDEIKRLK 794 AA L FE AAR+RDEI LK Sbjct: 681 EAAKELQFELAARLRDEIAELK 702 >gi|240168014|ref|ZP_04746673.1| excinuclease ABC subunit B [Mycobacterium kansasii ATCC 12478] Length = 698 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/690 (52%), Positives = 477/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VM Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVME 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQMANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+L++G V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGSEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAISTIEGELAERLAELEAQGKLLEAQRLRMRTNYDVEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFATRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRKRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 546 NVSGEVHMYADKITDSMKEAIDETERRRAKQIAYNQANGIDPQPLRKKIADILDQVYREA 605 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + I + S+ + G+A +K L +QM Sbjct: 606 DDTEAVEIGGSGRNASRGRRAQGAPGRAVSAGVFEGRDTSNMPRAELADLIKDLTEQMMA 665 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 666 AARDLQFELAARFRDEIADLKKE--LRGMD 693 >gi|325105912|ref|YP_004275566.1| excinuclease ABC, B subunit [Pedobacter saltans DSM 12145] gi|324974760|gb|ADY53744.1| excinuclease ABC, B subunit [Pedobacter saltans DSM 12145] Length = 676 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/666 (52%), Positives = 477/666 (71%), Gaps = 13/666 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL++G++S + Q LLGVTGSGKTFT+A VIE Q+P ++++ Sbjct: 3 FNLSSQYKPTGDQPNAIKQLVEGVNSGDHYQTLLGVTGSGKTFTIANVIEQTQKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++P T+TYIEK+ IN++I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPDNAVNYFVSYYDYYQPEAFLPTTNTYIEKDLQINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T +L+ R D IVVSS+SCIYG+G+ E +S + + +G + + L LV+ Y R Sbjct: 123 RTTSALMSGRRDIIVVSSISCIYGMGNPEDFSNSVFRFGVGTRISRNAFLHRLVEILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++I+P++L D A+RVS FG+DIEEI+ P+TG+ I + I I Sbjct: 183 TTAEFKRGTFRVKGDTVDIYPAYL-DFAYRVSFFGDDIEEIAAIDPITGKSIEKTQAITI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VTP+ + + I E+++ R + E EGR LEA+RLE+R YD+EM+ G C Sbjct: 242 FPANLFVTPKEKFISVLHEIGEDMEARKKQFESEGRFLEAKRLEERTNYDMEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG P L +Y P+D L+ +DESHVT+PQI MY GD RK +L E Sbjct: 302 SGIENYSRYFDGRRPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKVSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL F+E+ L P TI VSATPG +EL+Q +G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLNFQEFENLAPQTIYVSATPGDYELQQTEGVFVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ DEI+ +QG RIL+T LTKRMAE+L +Y+ NI+VRY+HSE+KTL Sbjct: 422 EVRPIINQVDDLLDEIDKTIKQGDRILVTTLTKRMAEELAKYMDRLNIKVRYIHSEIKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736 RN +VI+YAD+IT S+++ IDET RRREKQ+++N++H I P++V +E I+E + Sbjct: 542 RNDRGRVIMYADSITDSMRVTIDETNRRREKQIKYNEEHGIIPKTVGKSREAIIEQTSVV 601 Query: 737 LLE--------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + D + I+ D ++K + K + + +K+M A+ NL+F AA++RD Sbjct: 602 DFKGGIQQAYIDNSEPTIAADPVVQYMTKAQLKKSIDNTKKEMLAASKNLDFLLAAKLRD 661 Query: 789 EIKRLK 794 E+ L+ Sbjct: 662 EMYALE 667 >gi|50914390|ref|YP_060362.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394] gi|68053077|sp|Q5XBN4|UVRB_STRP6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|50903464|gb|AAT87179.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394] Length = 663 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/657 (54%), Positives = 472/657 (71%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRLPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I +I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|238060167|ref|ZP_04604876.1| excinuclease ABC, B subunit [Micromonospora sp. ATCC 39149] gi|237881978|gb|EEP70806.1| excinuclease ABC, B subunit [Micromonospora sp. ATCC 39149] Length = 702 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/689 (51%), Positives = 478/689 (69%), Gaps = 29/689 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P+GDQPAAI L + + ++ +LLG TG+GK+ T A ++E +QRP +V+A Sbjct: 12 FQVVSEFQPAGDQPAAIDDLERRVRRGDRNTVLLGATGTGKSATTAWLVERLQRPTLVLA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQL EF PHNAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH Sbjct: 72 PNKTLCAQLAKEFSELLPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VS IYG+G+ E Y V++ IG +++ +LL LV QY R Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVAIGQELDRDQLLRRLVDIQYTRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ +FG+++E++ PLTG +R V+++ I+ Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVEKLYYLNPLTGDVVREVDSLMIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY + A + I+ EL RL ELE++G+LLEAQRL R TYDLEM+ G C Sbjct: 251 PATHYAAGPERMERATRDIEAELAERLAELERQGKLLEAQRLRMRTTYDLEMMRQVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PG PP L +Y P+D L +DESHVTIPQI GMY GD RK L ++ Sbjct: 311 GIENYSMHIDGRQPGSPPHCLLDYFPDDFLTVIDESHVTIPQIGGMYEGDASRKRMLIDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRF+E+ + +SATPG WE+EQ QG VEQ+IRPTGL+DP V Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGGWEMEQAQGEFVEQVIRPTGLIDPEVV 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDL++YL E IRVRY+HSEV TL Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRKGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +V +YAD IT S+ AI+ET RRR KQ+ HN+ H I+P+ +++KI +++D I Sbjct: 551 NVSGQVHMYADKITPSMAEAIEETNRRRAKQVAHNEAHGISPEPLRKKIHDILDDIYREA 610 Query: 739 EDAATTNISIDAQQLSLSK------------------KKGKAH------LKSLRKQMHLA 774 ED T + A+QLS K ++G A ++ L QM A Sbjct: 611 EDTENTRVGGAARQLSRGKAPVKETRSRSRAGATGPSREGMARADLAQLIQELSDQMLAA 670 Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 A L FE AARIRDE+ LK +G+D Sbjct: 671 ARELQFELAARIRDEVADLKKE--LRGMD 697 >gi|294812003|ref|ZP_06770646.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064] gi|326440272|ref|ZP_08215006.1| excinuclease ABC subunit B [Streptomyces clavuligerus ATCC 27064] gi|294324602|gb|EFG06245.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064] Length = 719 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/706 (51%), Positives = 486/706 (68%), Gaps = 44/706 (6%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + + PSGDQP AIA L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERTVAPFEVVSPFQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 RLQRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V L++G+ +++ ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEIDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + +++ ++ SHYV L A+ I+ EL+ RL EL+K+G+LLE+QRL R TYD+ Sbjct: 243 LSEDQSLHVFPASHYVAGPERLEKAVDGIEAELEQRLAELDKQGKLLESQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS + GR PG PP TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMMRQIGSCSGIENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGAYELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI + ++ R+L+T LTK+MAEDLT+Y E IRVR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRVRTERDERVLVTTLTKKMAEDLTDYFLELGIRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNTEKGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNI--SIDAQQLSLSKKKGKAHLKSL--------------------- 767 +++ I E+ T + S + S K GKA + +L Sbjct: 602 DIVATIAREEVDTEELLGSDYRKPKERSGKAGKAPVPALGGKGAAQGRGRAGGKGERAGT 661 Query: 768 -------------------RKQMHLAADNLNFEEAARIRDEIKRLK 794 ++M AA +L FE AAR+RDE+ LK Sbjct: 662 GADTSGRPATELAGIIEEMTERMRAAAADLQFEIAARLRDEVGELK 707 >gi|296184678|ref|ZP_06853089.1| excinuclease ABC subunit B [Clostridium carboxidivorans P7] gi|296050460|gb|EFG89883.1| excinuclease ABC subunit B [Clostridium carboxidivorans P7] Length = 661 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/650 (54%), Positives = 469/650 (72%), Gaps = 6/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI ++K I+ +EK Q LLGVTGSGKTFTMA +IE +++P +V+A Sbjct: 4 FKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D +VV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L LV+ QY+R Sbjct: 124 SATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFRV GD ++IFP+ A R+ FG++I+ I EF LTG+ I + + I+ Sbjct: 184 EINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T R L A+K I+ EL+ R+ EL + +LLEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y PED LLF+DESHVTIPQ+ MY GD RK +L EY Sbjct: 304 GIENYSRILDGRAKGTPPQTLIDYFPEDYLLFIDESHVTIPQVKAMYAGDRSRKESLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATP ++ELE + EQIIRPTGL+DP +E Sbjct: 364 GFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTN-VAEQIIRPTGLLDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDL++Y E +I+ Y+HS + T++ Sbjct: 423 VKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEMDIKANYLHSGIDTIQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738 N SKVI+YAD IT S+ AI ET RRR+ Q+E+N+KHNI P+++K++I EVI+ +L Sbjct: 543 NSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTIKKEIREVIEATKVLE 602 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 E+A ++ + + + + + K+M AA L FE AA +RD Sbjct: 603 ENAQYDSLE---EAMEANNENIDLLISKYEKEMKQAAKELQFELAADLRD 649 >gi|282849045|ref|ZP_06258434.1| excinuclease ABC, B subunit [Veillonella parvula ATCC 17745] gi|282581320|gb|EFB86714.1| excinuclease ABC, B subunit [Veillonella parvula ATCC 17745] Length = 725 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/681 (52%), Positives = 479/681 (70%), Gaps = 28/681 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L +GI E Q+LLG TG+GKTFTMAKVIEA+Q+P +++A Sbjct: 14 FKVEAPFAPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH Sbjct: 74 HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G E YS +++ L++G + + E+L+ LV QY R Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILAKLVDIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+I+IFP+ + A RV +FG++I+ + E LTG+ I + + +Y Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + +N A++ I+ EL +L +L+ RLLEAQRLEQR YD+EM++ G C Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GE P TL +Y P+D L+ VDESHVT+PQI MY GD RK +L EY Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +E+E + I EQIIRPTGL+DP +E Sbjct: 374 GFRLPSTLDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI+ A + R+L+T LTK+MAEDLTE+L E +RVRY+HS++ T+E Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T++IQTIGRAAR Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD +T S+Q AIDET RRR Q +N +HNI P+SV + + E+I+ +E+ Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612 Query: 741 AATTNIS--IDAQQLSLSKKKGKAH-------------------------LKSLRKQMHL 773 T+ + +G H ++ L +QM Sbjct: 613 DMVTDGKGLSSKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELDRQMKA 672 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE AA++RD++ L+ Sbjct: 673 AAKQLEFETAAKLRDQLGVLR 693 >gi|332704019|ref|ZP_08424107.1| UvrABC system protein B [Desulfovibrio africanus str. Walvis Bay] gi|332554168|gb|EGJ51212.1| UvrABC system protein B [Desulfovibrio africanus str. Walvis Bay] Length = 679 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/656 (53%), Positives = 464/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQP AI +L I + Q+LLGVTGSGKTFTMA V+ + RP +VMA Sbjct: 17 FKLVSPFEPMGDQPQAIEKLAWAIENGVSEQVLLGVTGSGKTFTMANVVAKVNRPTLVMA 76 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL++EFK FP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSIN+ ID++RH Sbjct: 77 PNKTLAAQLFNEFKALFPENAVEYFVSYYDYYQPEAYLPHTDTYIEKDSSINDDIDKLRH 136 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D ++V+SVSCIYG+GS E Y++M+V L+ G + + L + LV+ Y+R Sbjct: 137 SATHALLTRRDVLIVASVSCIYGLGSPEYYAKMVVPLERGQQLSMERLAARLVEVHYERN 196 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +EI P++ + A RV FG+++E I E PLTG+ ++ I+ Sbjct: 197 DYDFSRGKFRVRGDVLEIIPAYSRERALRVEFFGDEVEAIYETDPLTGEVFSTIKKTVIF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V+ R + A I++EL RL ++E +LLEAQR+EQR +DLEM+E G C Sbjct: 257 PASHFVSDRDNTSRASSDIRDELGERLRYFQRENKLLEAQRIEQRTMFDLEMIEELGYCN 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GEPP TL +Y PED LLFVDESH+TI QI GM++GD RK TL ++ Sbjct: 317 GIENYSRHLDGRRAGEPPATLLDYFPEDFLLFVDESHITISQIGGMFKGDRSRKQTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG WELE+ +VEQIIRPTGLVDP +E Sbjct: 377 GFRLPSALDNRPLAFEEFLTRVNQCVYVSATPGPWELERSGDAVVEQIIRPTGLVDPILE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++++ E L +G R+L+T LTKRMAEDLTEY+ ++ RY+HS++ TLE Sbjct: 437 VRPVKGQMDNLLAECKLRKTRGERVLVTTLTKRMAEDLTEYMLSMGVQTRYLHSDIDTLE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II+ LR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SL+QT GRAAR Sbjct: 497 RVAIIQALRAGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLVQTFGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KV++YAD IT S++ A+DET RRR +Q +HN++ I P+++ + + V++ + + Sbjct: 557 NVGGKVVMYADKITDSMRAAMDETNRRRTRQEDHNREMGITPRTILKSLENVLEKLYPDS 616 Query: 741 AATT--NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T ++ +A + K+ + +KSL + M AA L FE AA IRD I LK Sbjct: 617 EAETYAKVAEEAAKYGHDPKRIEKEIKSLERDMREAAKELAFERAAEIRDRIFSLK 672 >gi|239828307|ref|YP_002950931.1| excinuclease ABC subunit B [Geobacillus sp. WCH70] gi|239808600|gb|ACS25665.1| excinuclease ABC, B subunit [Geobacillus sp. WCH70] Length = 659 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/657 (56%), Positives = 479/657 (72%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AIA+L++GI K Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 5 FELVSAYKPQGDQPKAIAKLVEGIRKGVKHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY+R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ I E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL ++G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIENIEKELEERLRELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQIRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPE-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIHERIKRNERTLVTTLTKKMAEDLTDYLKEVGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+GK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRMGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI+ET RRR Q +NKKH I PQ+VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAINETKRRRAIQEAYNKKHGIVPQTVKKEIRDVIRATY--- 600 Query: 741 AATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + D + ++KK+ + + L K+M AA L+FE AA++RD I LK+ Sbjct: 601 AAEEKETYDTKPSYGKMAKKEREKLIADLEKEMKEAAKALDFERAAQLRDIIFELKA 657 >gi|254391573|ref|ZP_05006773.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064] gi|197705260|gb|EDY51072.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064] Length = 709 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/696 (52%), Positives = 482/696 (69%), Gaps = 44/696 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AIA L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 4 FEVVSPFQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIERLQRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH Sbjct: 64 PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+G+ + Y +V L++G+ +++ ELL V QY R Sbjct: 124 SATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEIDRDELLRRFVDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ + +++ ++ Sbjct: 184 DVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEILSEDQSLHVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV L A+ I+ EL+ RL EL+K+G+LLE+QRL R TYD+EM+ GSC Sbjct: 243 PASHYVAGPERLEKAVDGIEAELEQRLAELDKQGKLLESQRLRMRTTYDIEMMRQIGSCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + GR PG PP TL +Y PED LL +DESHVT+PQI MY GD RK TL ++ Sbjct: 303 GIENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIRPTGLVDP V Sbjct: 363 GFRLPSALDNRPLKWEEFTERIGQTVYLSATPGAYELSRGDG-FVEQIIRPTGLVDPEVV 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI + ++ R+L+T LTK+MAEDLT+Y E IRVRY+HS+V TL Sbjct: 422 VKPTEGQIDDLVHEIRVRTERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSDVDTLR 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 482 RVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT +++ AIDET RRREKQ+ +N + I+PQ +++KI +++ I E+ Sbjct: 542 NVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNTEKGIDPQPLRKKINDIVATIAREE 601 Query: 741 AATTNI--SIDAQQLSLSKKKGKAHLKSL------------------------------- 767 T + S + S K GKA + +L Sbjct: 602 VDTEELLGSDYRKPKERSGKAGKAPVPALGGKGAAQGRGRAGGKGERAGTGADTSGRPAT 661 Query: 768 ---------RKQMHLAADNLNFEEAARIRDEIKRLK 794 ++M AA +L FE AAR+RDE+ LK Sbjct: 662 ELAGIIEEMTERMRAAAADLQFEIAARLRDEVGELK 697 >gi|19746295|ref|NP_607431.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS8232] gi|23822292|sp|Q8P0J7|UVRB_STRP8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|19748485|gb|AAL97930.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes MGAS8232] Length = 663 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/657 (53%), Positives = 472/657 (71%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y PSGDQP AI L+ I EK Q+LLG TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y+ V L+ G + + LL+ LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTG+ I V+ + ++ Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + ++ I+ EL +L E EG+LLEAQRL QR YD+EML G Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR +E+ + VSATPG +E+ Q II EQIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLRRKEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R +T LTK+MAEDLT+YL E ++V+YMHS++KTLE Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I I Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGFISI----- 603 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T++ I +++ S+S+ + K + +L+KQM AA+ L+FE AA++RD I LK Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660 >gi|163815024|ref|ZP_02206411.1| hypothetical protein COPEUT_01180 [Coprococcus eutactus ATCC 27759] gi|158449707|gb|EDP26702.1| hypothetical protein COPEUT_01180 [Coprococcus eutactus ATCC 27759] Length = 662 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 477/656 (72%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+KG + + LLGVTGSGKTFTMA VI+ + +P +V+A Sbjct: 4 FELVSEYKPTGDQPEAIEKLVKGFQEGNQFETLLGVTGSGKTFTMANVIQQLNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN+ IDRMRH Sbjct: 64 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVASTDTYIAKDSSINDDIDRMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L++R D IVV+SVSCIYGIG + Y ++ ++G ++ +++ L QY R Sbjct: 124 SATAALIDRKDVIVVASVSCIYGIGDPDEYRNQMLSFRVGMIKDRDQVIDELTDIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGTFRV GD +EI P D R+ FG++I+ I+EF PLTG+ R++ ++ Sbjct: 184 DMDLQRGTFRVRGDVLEIIPVSTFDDGIRIEFFGDEIDRITEFDPLTGEGKRDLTYTCLF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + + A+K I+ ELK R+ + + +L+EAQR+E+R +D+EM+ TG C Sbjct: 244 PASHYVVGQEKMEKALKRIEAELKDRVAYFKSKDKLIEAQRIEERTNFDMEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L GR+ GE P TL ++ +D LL +DESH+T+PQ+ MY GD RK L +Y Sbjct: 304 GIENYSGPLAGRSAGETPSTLLDFFGDDFLLIIDESHMTVPQVGAMYSGDRSRKMNLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATPG +E E+ Q ++ EQIIRPTGL+DPPVE Sbjct: 364 GFRLPSALDNRPLNFSEFEQKLDQVMFVSATPGKYE-EEHQMLMAEQIIRPTGLLDPPVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+ +QG ++L+T LTKRMAEDLT Y+ + +I+V+Y+HS++ T+E Sbjct: 423 VRPVEGQIDDLLKEVRKETEQGHKVLVTTLTKRMAEDLTSYMRDNDIKVKYLHSDIDTME 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIVRDLRLGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YADTIT S++ A+DET+RRRE Q ++N++H I P+++++ I ++I I ++ Sbjct: 543 NVDGHVIMYADTITGSMKYALDETSRRREIQQKYNEEHGITPKTIEKSIRDLI-TIEVKK 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + DA+ S++KK+ + + L K+M++AA +LNFE AA IRD++K K++ Sbjct: 602 EELPDEDKDAE--SMTKKELQKVIAKLTKKMNMAAADLNFEVAAEIRDQLKVYKAA 655 >gi|302390209|ref|YP_003826030.1| Excinuclease ABC subunit B [Thermosediminibacter oceani DSM 16646] gi|302200837|gb|ADL08407.1| Excinuclease ABC subunit B [Thermosediminibacter oceani DSM 16646] Length = 671 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/658 (55%), Positives = 474/658 (72%), Gaps = 2/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AIA L +GI K Q LLG TG+GKTFT+A +IE +Q+P +V+A Sbjct: 4 FRVVSEFTPKGDQPKAIAALSEGIRKGYKFQTLLGATGTGKTFTIANLIEKVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SE K FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAGQLCSELKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIY +GS Y ++ L+ G ++ E++ LV+ QY R Sbjct: 124 SATAALFERRDVVIVASVSCIYSLGSPVDYENQVISLRPGMVKDRDEIIRRLVEIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R TFRV GD +EI+P+ + A RV FG+ I+ I+E LTG+ + + I+ Sbjct: 184 EFEFSRNTFRVHGDILEIYPASFTERAIRVEFFGDVIDRITEIDTLTGEVMGERTHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR L A+K IKEEL+ RL EL +G+LLEA RLEQR YD+EML TG C+ Sbjct: 244 PASHYVTPRDKLEAAIKSIKEELEERLAELRAKGKLLEAARLEQRTNYDIEMLRETGYCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL +Y P D L+ +DESHVTIPQ+ M+ GD RK L E+ Sbjct: 304 GIENYSRHLTGRKPGEPPFTLLDYFPRDYLIIIDESHVTIPQLRAMWAGDRSRKEALVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I +SATPG +ELE+ +VEQIIRPTGLVDP VE Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFLSATPGPYELEKSSQ-VVEQIIRPTGLVDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI A++ R+L+T LTK+MAEDL +YL E I+V+Y+HSE+ TLE Sbjct: 423 VRPTKGQIDDLIGEIRKRAEKDQRVLVTTLTKKMAEDLCDYLRESGIKVKYLHSEINTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFD LVG+NLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RLQILRDLRLGKFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADTIT+S+ AI ET RRR Q+E+N+KH I P +VK+ I E+I+ + Sbjct: 543 NAEGRVIMYADTITESMARAISETNRRRMIQMEYNRKHGIVPTTVKKGIREMIEATKAAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 + + +SKK+ KA+L L K+M AA NL FE AA++RD I +K+ + Sbjct: 603 ERADYLP-EKDLARMSKKELKAYLDKLEKEMKQAARNLEFERAAQLRDIIFEIKAQAF 659 >gi|227551701|ref|ZP_03981750.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330] gi|257887163|ref|ZP_05666816.1| excinuclease ABC [Enterococcus faecium 1,141,733] gi|257895700|ref|ZP_05675353.1| excinuclease ABC [Enterococcus faecium Com12] gi|257898270|ref|ZP_05677923.1| excinuclease ABC [Enterococcus faecium Com15] gi|293377690|ref|ZP_06623879.1| excinuclease ABC, B subunit [Enterococcus faecium PC4.1] gi|293571886|ref|ZP_06682902.1| excinuclease ABC, B subunit [Enterococcus faecium E980] gi|227179142|gb|EEI60114.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330] gi|257823217|gb|EEV50149.1| excinuclease ABC [Enterococcus faecium 1,141,733] gi|257832265|gb|EEV58686.1| excinuclease ABC [Enterococcus faecium Com12] gi|257836182|gb|EEV61256.1| excinuclease ABC [Enterococcus faecium Com15] gi|291608140|gb|EFF37446.1| excinuclease ABC, B subunit [Enterococcus faecium E980] gi|292643690|gb|EFF61811.1| excinuclease ABC, B subunit [Enterococcus faecium PC4.1] Length = 664 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +IE + +P +++A Sbjct: 10 FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IV++SVSCI+G+GS Y + +V ++ G +++ +L+ LV Q++R Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG+++E I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK EL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLAVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +E EQ +I +QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEYEQTDTVI-QQIIRPTGLLDPVIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S++LA+DET+RRR Q ++N++H I P+++ ++I ++I I E Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T ++ ++K++ L L K+M AA L+FE AA +RD I LK+S Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663 >gi|331090556|ref|ZP_08339408.1| UvrABC system protein B [Lachnospiraceae bacterium 2_1_46FAA] gi|330403120|gb|EGG82682.1| UvrABC system protein B [Lachnospiraceae bacterium 2_1_46FAA] Length = 668 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 480/655 (73%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA VI+ + RP +++A Sbjct: 10 FELISEYAPTGDQPQAIEQLVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLNRPTLIIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH Sbjct: 70 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E+++ L++ QY R Sbjct: 130 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVAKLIEIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-ETIKI 379 DI RGTFRV GD +EIFP+ E+ A RV FG+++E I+E LTG+ I+NV + I Sbjct: 190 DIDFKRGTFRVRGDVLEIFPAISEEYAIRVEFFGDEVERITEIDVLTGE-IKNVLNHVAI 248 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHYV + + A K I+EEL+ R+ + E +LLEAQR+ +R +D+EM++ TG C Sbjct: 249 FPASHYVVSKENMEKATKAIEEELEERIRYFKGEDKLLEAQRISERTNFDIEMMKETGFC 308 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTG G+PP TL +Y P+D L+ +DESH TIPQI+GMY GD RK+TL + Sbjct: 309 SGIENYSRHLTGLKEGQPPHTLIDYFPDDFLIMIDESHKTIPQIAGMYAGDQSRKSTLVD 368 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRPL FEE+ + VSATPG +E E+ + + +QIIRPTGL+DP V Sbjct: 369 YGFRLPSAKDNRPLNFEEFESKINQILFVSATPGEYE-EKNELLRADQIIRPTGLLDPEV 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TL Sbjct: 428 EVRGVEGQIDDLVGEVNKEIAKKNKVLVTTLTKRMAEDLTDYMRELGIRVKYLHSDIDTL 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 488 ERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN VI+YADT+T S++ AI ET RRR+ Q+ +N++H I PQ+VK+ + ++I + + Sbjct: 548 RNAEGHVIMYADTMTDSMKNAIRETERRRKVQMAYNEEHGITPQTVKKAVRDLIS--ISK 605 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ + ++ S+S+ + + +K + KQM AA LNFE AA++RD++ LK Sbjct: 606 KVASEELQMEKDPESMSRSELEKLIKDMTKQMKKAAAELNFEMAAQVRDKLVELK 660 >gi|69248957|ref|ZP_00604830.1| Excinuclease ABC, B subunit [Enterococcus faecium DO] gi|257878495|ref|ZP_05658148.1| excinuclease ABC [Enterococcus faecium 1,230,933] gi|257884374|ref|ZP_05664027.1| excinuclease ABC [Enterococcus faecium 1,231,501] gi|257889305|ref|ZP_05668958.1| excinuclease ABC [Enterococcus faecium 1,231,410] gi|257894318|ref|ZP_05673971.1| excinuclease ABC [Enterococcus faecium 1,231,408] gi|258615979|ref|ZP_05713749.1| excinuclease ABC subunit B [Enterococcus faecium DO] gi|260560084|ref|ZP_05832262.1| excinuclease ABC [Enterococcus faecium C68] gi|261207428|ref|ZP_05922114.1| excinuclease ABC [Enterococcus faecium TC 6] gi|289566472|ref|ZP_06446897.1| excinuclease ABC, B subunit [Enterococcus faecium D344SRF] gi|293557297|ref|ZP_06675843.1| excinuclease ABC, B subunit [Enterococcus faecium E1039] gi|293560169|ref|ZP_06676671.1| excinuclease ABC, B subunit [Enterococcus faecium E1162] gi|293568102|ref|ZP_06679439.1| excinuclease ABC, B subunit [Enterococcus faecium E1071] gi|294616497|ref|ZP_06696278.1| excinuclease ABC, B subunit [Enterococcus faecium E1636] gi|314939958|ref|ZP_07847158.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a04] gi|314942567|ref|ZP_07849401.1| excinuclease ABC subunit B [Enterococcus faecium TX0133C] gi|314947465|ref|ZP_07850880.1| excinuclease ABC subunit B [Enterococcus faecium TX0082] gi|314952489|ref|ZP_07855490.1| excinuclease ABC subunit B [Enterococcus faecium TX0133A] gi|314992414|ref|ZP_07857840.1| excinuclease ABC subunit B [Enterococcus faecium TX0133B] gi|314996254|ref|ZP_07861313.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a01] gi|68194330|gb|EAN08843.1| Excinuclease ABC, B subunit [Enterococcus faecium DO] gi|257812723|gb|EEV41481.1| excinuclease ABC [Enterococcus faecium 1,230,933] gi|257820212|gb|EEV47360.1| excinuclease ABC [Enterococcus faecium 1,231,501] gi|257825665|gb|EEV52291.1| excinuclease ABC [Enterococcus faecium 1,231,410] gi|257830697|gb|EEV57304.1| excinuclease ABC [Enterococcus faecium 1,231,408] gi|260073919|gb|EEW62243.1| excinuclease ABC [Enterococcus faecium C68] gi|260078319|gb|EEW66024.1| excinuclease ABC [Enterococcus faecium TC 6] gi|289161737|gb|EFD09612.1| excinuclease ABC, B subunit [Enterococcus faecium D344SRF] gi|291589184|gb|EFF20995.1| excinuclease ABC, B subunit [Enterococcus faecium E1071] gi|291590645|gb|EFF22373.1| excinuclease ABC, B subunit [Enterococcus faecium E1636] gi|291600549|gb|EFF30855.1| excinuclease ABC, B subunit [Enterococcus faecium E1039] gi|291605841|gb|EFF35273.1| excinuclease ABC, B subunit [Enterococcus faecium E1162] gi|313589576|gb|EFR68421.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a01] gi|313593049|gb|EFR71894.1| excinuclease ABC subunit B [Enterococcus faecium TX0133B] gi|313595395|gb|EFR74240.1| excinuclease ABC subunit B [Enterococcus faecium TX0133A] gi|313598671|gb|EFR77516.1| excinuclease ABC subunit B [Enterococcus faecium TX0133C] gi|313640792|gb|EFS05372.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a04] gi|313646015|gb|EFS10595.1| excinuclease ABC subunit B [Enterococcus faecium TX0082] Length = 664 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +IE + +P +++A Sbjct: 10 FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IV++SVSCI+G+GS Y + +V ++ G +++ +L+ LV Q++R Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG+++E I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK EL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +E EQ +I +QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S++LA+DET+RRR Q ++N++H I P+++ ++I ++I I E Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T ++ ++K++ L L K+M AA L+FE AA +RD I LK+S Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663 >gi|308071042|ref|YP_003872647.1| UvrABC system protein B (UvrB protein) [Paenibacillus polymyxa E681] gi|305860321|gb|ADM72109.1| UvrABC system protein B (UvrB protein) [Paenibacillus polymyxa E681] Length = 663 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 486/655 (74%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+++ P GDQP AI +L++GI +K Q LLG TG+GKTFT+A+ I + RP +V+A Sbjct: 11 FEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTFTIAQTIAKLNRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH Sbjct: 71 HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS + YS +++ L++G + ++LS LV QY+R Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ + A RV +FG++IE I+E LTG+ I + I I+ Sbjct: 191 DINFVRGTFRVRGDVVEIFPASHGEHAIRVELFGDEIERITEINVLTGELIGERDHIAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A+ I+ EL+ RL EL+++G+LLEAQRLEQR YD+EM++ G C Sbjct: 251 PASHFVTHEDTMKVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDIEMMKEVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L E+ Sbjct: 311 GVENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +E+E+C+ +V+QIIRPTGL+DP +E Sbjct: 371 GFRLPSALDNRPLKFEEFEDKVSQIIYVSATPGPYEMEKCE-TMVQQIIRPTGLLDPIIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ++ Q++D+ EI L ++ R+L+T LTK+M+EDLT+YL E I+VRYMHSE+KTLE Sbjct: 430 VRPSKGQIDDLISEIRLRIEREERVLVTTLTKKMSEDLTDYLKEVGIKVRYMHSEIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLRLG FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+Y D IT S+ A+ ET RRR Q+++N++H I PQ++++KI +VI+ + Sbjct: 550 NSDGRVIMYGDKITDSMDKALKETERRRAIQIQYNEEHGITPQTIRKKIRDVIEATKV-- 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + N + + LSKK+ ++ ++ L +M AA NL FE AA +RD + L++ Sbjct: 608 AESKNDYLPNETGKLSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLELRA 662 >gi|270260806|ref|ZP_06189079.1| UvrABC system protein B [Serratia odorifera 4Rx13] gi|270044290|gb|EFA17381.1| UvrABC system protein B [Serratia odorifera 4Rx13] Length = 670 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/659 (55%), Positives = 468/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +V+A Sbjct: 5 FKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G E Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPELYLKMMLHLTKGMIIDQRSILRRLTELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP+ +++A R+ +F ++E +S F PLTGQ + V+ IY Sbjct: 185 DQAFQRATFRVRGEVIDIFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR + AM+ IK +L R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ GEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL EY Sbjct: 305 GIENYSRYLSGRSEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP VE Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPIVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVTTQVDDLLSEIRKRVAVKERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N+N K ILY D IT S+ AI ET RRR KQ N+++ I P+ + +K+ +++ P Sbjct: 545 NLNGKAILYGDRITDSMARAIGETERRRVKQQAFNEENGIVPKGLNKKVSDILQLGQPGN 604 Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + AQ L+ K ++ L QM+ A NL FE AA +RDEI +L+ Sbjct: 605 RSKGRGKGKAAESAAQYQHLTPKALDQKIRELEAQMYTHAQNLEFELAAGLRDEIHQLR 663 >gi|168210416|ref|ZP_02636041.1| excinuclease ABC, B subunit [Clostridium perfringens B str. ATCC 3626] gi|170711521|gb|EDT23703.1| excinuclease ABC, B subunit [Clostridium perfringens B str. ATCC 3626] Length = 659 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL +++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRIPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + I+ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYETEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|317495353|ref|ZP_07953723.1| excinuclease ABC [Gemella moribillum M424] gi|316914775|gb|EFV36251.1| excinuclease ABC [Gemella moribillum M424] Length = 665 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 462/655 (70%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ Y P GDQ AI +L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A Sbjct: 10 FDLQSSYEPKGDQVNAIRELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++L L+ QY R Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEINRNKILEKLINIQYMRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD IEIFP+ + + R+ MFG++IE I E LTG+ + + I IY Sbjct: 190 DIDFIRGTFRVRGDVIEIFPASRSENSVRIEMFGDEIERIREINSLTGEVLSELNHIAIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V A+K I+ EL+ RL E +LLEAQRLEQR YDLEM+E G C Sbjct: 250 PASHFVAGEEKTKEAIKRIRAELEDRLKVFNLENKLLEAQRLEQRTNYDLEMMEEMGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R PG P TL +Y P+D LL VDESHVT+PQ+ GM+ GD RK L +Y Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPKDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL + E+ I VSATPG +ELE I EQIIRPTGL+DP ++ Sbjct: 370 GFRLPTALDNRPLNYTEFENKLNQAIFVSATPGDYELEHSSK-ITEQIIRPTGLLDPIID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV D+ E ++G R+L+T LTK+MAE LT YL E ++V Y+HS++KTLE Sbjct: 429 IRPVSDQVFDITKEAEKIIEKGERVLITTLTKKMAEALTAYLKENGLKVEYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFD+LVGINLLREGLDIPE LVAILDADKEGFLR +L+QTIGRAAR Sbjct: 489 RTEIIRNLRLGKFDILVGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ I + D I + Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGITPQTI---IKGIRDSISAKK 605 Query: 741 AATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + S++ AQ +++ + HL L ++M AA +FE AA +RD I LK Sbjct: 606 EVLPDESVELAQDTNITDDNIEEHLAELEQEMFAAAGKFDFERAAVLRDTIAELK 660 >gi|325111226|ref|YP_004272294.1| excinuclease ABC subunit B [Planctomyces brasiliensis DSM 5305] gi|324971494|gb|ADY62272.1| Excinuclease ABC subunit B [Planctomyces brasiliensis DSM 5305] Length = 689 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/654 (53%), Positives = 478/654 (73%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P+GDQP AI L +G+ ++ Q+LLGVTGSGKTFTMA VI+ MQRP +V++ Sbjct: 4 FQIASEFQPAGDQPKAIESLSRGLEEGKRNQVLLGVTGSGKTFTMANVIQKMQRPTLVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EF+ FFP+NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R Sbjct: 64 HNKTLAAQLYAEFREFFPNNAVTYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +L+ R D IVV+SVSCIYG+GS + Y M++ L++G+ V++ +LL LV Y+R Sbjct: 124 LATSALVSRRDVIVVASVSCIYGLGSPKDYLDMMIPLQVGEQVDRDDLLLRLVDIHYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD IE++P++ E+ A+R+ ++G++IE +S P++G+ + + I IY Sbjct: 184 DFQRARGKFRVRGDVIELWPAY-EEFAYRIELWGDEIETLSIIDPVSGETHKIHKDIYIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P+ ++ AM I+EEL RL E +G+LLE QRL R YD+E+L+ TG C Sbjct: 243 PAKHFVLPQSRIDAAMVEIEEELNSRLEEFRTQGKLLEMQRLSARTRYDMELLKETGFCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR PG+PP TL+++ P+D L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 303 GIENYSRALSGRKPGQPPYTLYDFFPDDFLMFIDESHVTLPQVRAMYAGDRSRKESLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP MDNRPL FEEWN R + VSATP WEL+Q +G IVEQIIRPTGLVDP + Sbjct: 363 GFRLPMAMDNRPLTFEEWNKRRGQVVFVSATPADWELDQSEGEIVEQIIRPTGLVDPLIH 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I AR QV+ + ++I +G R L+T LTKR++EDLT YL E I+ ++HSE+ +E Sbjct: 423 IVPARRQVQHLIEQIRERTARGERTLVTTLTKRLSEDLTGYLQEEGIKCAWLHSELDAIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R+LR G D LVG+NLLREG+D+PE LVAILDADKEGFLR++TSLIQTIGR+AR Sbjct: 483 RVEILRELREGVHDALVGVNLLREGIDLPEVSLVAILDADKEGFLRNETSLIQTIGRSAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN++VILYADT+T+S++ AI ET RRRE QLE+N+KH I P+++++ I I+ L Sbjct: 543 NVNAEVILYADTMTESMENAIGETNRRRELQLEYNQKHGITPETIRKAIRRGIEEELEAR 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +S + + ++ +L+ L +M AA+NL FE AA +RD+I +LK Sbjct: 603 QIVQQVSGASDETQYVTQE---YLQELEAEMLKAAENLEFERAAELRDQIMKLK 653 >gi|294628749|ref|ZP_06707309.1| excinuclease ABC, B subunit [Streptomyces sp. e14] gi|292832082|gb|EFF90431.1| excinuclease ABC, B subunit [Streptomyces sp. e14] Length = 708 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/695 (52%), Positives = 477/695 (68%), Gaps = 43/695 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 4 FEVVSPYQPSGDQPQAIAELARRIQAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH Sbjct: 64 PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ + Y +V L++GD V++ ELL V QY R Sbjct: 124 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEVDRDELLRRFVDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I + + + ++ Sbjct: 184 DLAFSRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEIISDDQQLYVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL RL ELEK+G+LLEAQRL R TYD+EML G+C Sbjct: 243 PASHYVAGPERMERAVNGIEKELGERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGTCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS + R PG PP TL +Y P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 303 GVENYSMHFDDRAPGTPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIRPTGLVDP V Sbjct: 363 GFRLPSALDNRPLKWEEFQERIGQTVYLSATPGQYELSRSDG-QVEQIIRPTGLVDPEVV 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VRY+HS+V TL Sbjct: 422 VKPTEGQIDDLVHEIRARTEKDERVLVTTLTKKMAEDLTDYFLELGIQVRYLHSDVDTLR 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 482 RIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT +++ AIDET RRREKQ+ +NK H I+PQ +++KI +++ I E+ Sbjct: 542 NVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNKAHGIDPQPLRKKINDIVAQIAREE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQ------------------------------ 770 T + + + K KA + +L Q Sbjct: 602 VDTEQLLGTGYRKTKDGKGAKAPVPALGDQAVKGGKGAKAGKSAKGKAAETVPTDRPAAQ 661 Query: 771 -----------MHLAADNLNFEEAARIRDEIKRLK 794 M AA L FE AAR+RDE+ +K Sbjct: 662 LAEQIEQMTERMRAAAAELQFEVAARLRDEVSEMK 696 >gi|298528342|ref|ZP_07015746.1| excinuclease ABC, B subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511994|gb|EFI35896.1| excinuclease ABC, B subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 664 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/662 (53%), Positives = 473/662 (71%), Gaps = 4/662 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F + ++Y P GDQ AI L++ + Q+LLGVTGSGKTFTMA VI RPA+ Sbjct: 1 MTAFNLVSEYTPQGDQVEAIEHLVQNLDQGLDHQVLLGVTGSGKTFTMANVIARSNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 VMAPNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+SSIN+ ID+ Sbjct: 61 VMAPNKTLAAQLYNEFRLLFPENAVEYFVSYYDYYQPEAYLPRTDTYIEKDSSINDDIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RH+AT +LL R D ++V+SVSCIYG+GS E YS+MI+ L+ G +++ EL++ LV+ QY Sbjct: 121 LRHAATHALLTRRDVLIVASVSCIYGLGSPEYYSKMIIPLEEGQTMDMDELMARLVEVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D RGTFRV GD +EI P++ + A R+ FG+ +E + E PLTG+ ++ Sbjct: 181 ERNDYDFHRGTFRVRGDVLEIIPAYRMEQALRIEFFGDTVESLFETDPLTGEIKSRLKKT 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY SHYV+ + L AM I++EL+ RL +++ L+EAQRLEQR DLEM++ G Sbjct: 241 VIYPGSHYVSDQDNLQRAMNDIRDELRHRLNWFQEQNMLVEAQRLEQRTQLDLEMIQEMG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+L GR G+PP L +Y P+D LLF+DESH+TIPQ+ GMY GD RK TL Sbjct: 301 YCNGIENYSRHLDGRRQGQPPACLLDYFPDDYLLFIDESHITIPQVGGMYNGDLSRKKTL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS +DNRPL F+E+ T+ VSATPG WE+++ QG++ EQIIRPTGLVDP Sbjct: 361 VDFGFRLPSALDNRPLSFDEFQERMGQTVYVSATPGPWEMDKSQGVLAEQIIRPTGLVDP 420 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+R Q++D+ +E + R+L+T LTKRMAEDLT+YL ER +R +Y+HS++ Sbjct: 421 EIEVRPTHGQMDDLLNECLQRQENDQRVLVTTLTKRMAEDLTDYLQERGVRSKYLHSDID 480 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER+ II+ LR G+F VLVGINLLREGLDIPE LV+ILDADKEGFLRS SLIQT GR Sbjct: 481 TLERVAIIQALRAGEFYVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTRSLIQTFGR 540 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+++VI+YAD +T S++ A+DET RRR KQ E N +H I P S+ + + + Sbjct: 541 AARNVDARVIMYADRVTDSMRRAMDETERRRSKQKEFNLEHGIVPASIVKAGPNTLYE-M 599 Query: 738 LEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + A+++S +K + +KSL ++M A +L FEEAAR+RD I+ LK Sbjct: 600 HNQPEPEQMGLAAEEISRYGADPQKLEKEIKSLERKMRKLAQDLEFEEAARVRDRIQDLK 659 Query: 795 SS 796 ++ Sbjct: 660 NA 661 >gi|168216608|ref|ZP_02642233.1| excinuclease ABC, B subunit [Clostridium perfringens NCTC 8239] gi|182381313|gb|EDT78792.1| excinuclease ABC, B subunit [Clostridium perfringens NCTC 8239] Length = 659 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL +++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + ++ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|239931934|ref|ZP_04688887.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672] gi|291440302|ref|ZP_06579692.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672] gi|291343197|gb|EFE70153.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672] Length = 716 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/710 (50%), Positives = 487/710 (68%), Gaps = 55/710 (7%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 +++ + + F++ + Y PSGDQP AIA L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSHIERTVAPFEVVSSYRPSGDQPTAIADLARRIEAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V L++GD +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD++EIFP + E++A R+ MFG++IE +S +P+TG+ Sbjct: 184 RFVDIQYTRNDMAFTRGTFRVRGDTVEIFPVY-EELAVRIEMFGDEIEALSTLHPVTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + + ++ SHYV + A+ I++EL RL ELEK+G+LLEAQRL R TYD+ Sbjct: 243 ISDDQQLYVFPASHYVAGPERMERAVNDIEKELVERLAELEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C +ENYS + GR PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGTCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G +VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-VVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNKANGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQL--SLSKKKGK--------------------------- 761 +++ I ED ID +QL S +K GK Sbjct: 602 DIVAQIARED-------IDTEQLLGSGYRKAGKDGGGTRTPVPALGTKAGKGAKAAKGAK 654 Query: 762 -----------------AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +M AA +L FE AAR+RDE+ +K Sbjct: 655 GKAGETAPTDRPAAELAEQIEELTARMRAAAADLQFEIAARLRDEVSEMK 704 >gi|238749841|ref|ZP_04611345.1| UvrABC system protein B [Yersinia rohdei ATCC 43380] gi|238711770|gb|EEQ03984.1| UvrABC system protein B [Yersinia rohdei ATCC 43380] Length = 694 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/660 (54%), Positives = 470/660 (71%), Gaps = 5/660 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ +++ P+GDQP AI +L +G+ + Q LLGVTGSGKTFT+A VI + RP +++ Sbjct: 28 LFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMIL 87 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 88 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 147 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 148 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 207 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RGTFRV G+ I+IFP+ ++ A RV +F ++E +S F PLTGQ V + Sbjct: 208 NDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTV 267 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + AM+ IK EL R L +L+E QR+ QR +DLEM+ G C Sbjct: 268 YPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLIEEQRITQRTQFDLEMMNELGYC 327 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK TL E Sbjct: 328 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 387 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L P TI VSATPG +ELE+ +V+Q++RPTGL+DP + Sbjct: 388 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLDPLI 447 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R TQV+D+ EI + A R+L+T LTKRMAEDLT+YL E RVRY+HS++ T+ Sbjct: 448 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLGEHGARVRYLHSDIDTV 507 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 508 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 567 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736 RN+N K ILY D IT S++ AI ET RRR KQ +N++ I PQ + +K+ +++ P Sbjct: 568 RNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKVGDILQLGQPS 627 Query: 737 LLEDAATTNISI-DAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + D SLS K ++ L +M+ A NL FE+AA +RD++ +L+ Sbjct: 628 MRGKGKGRGGKVADTNNYQSLSPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 687 >gi|291562531|emb|CBL41347.1| excinuclease ABC, B subunit [butyrate-producing bacterium SS3/4] Length = 663 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/654 (53%), Positives = 470/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI+ + +P +V+A Sbjct: 4 FELVSEYQPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLNKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 64 HNKTLAAQLYSEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND I+V+SVSCIYG+GS Y M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALSERNDVIIVASVSCIYGLGSPIDYKNMVISLRPGMEKDRDEVIHKLIDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RG+FRV GD +E+FP++ A+R+ FG++++ I E LTG+ +E + I+ Sbjct: 184 EMDFKRGSFRVRGDVLEVFPAYSGSEAYRIEFFGDEVDRIMEIEALTGEVKAQLEHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A + I E+K ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVPKEKMMRATENILAEMKEQVTFFKSEDKLLEAQRIAERTNFDVEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+PP TL +Y P+D L+ VDESH+T+PQ+ GMY GD RK TL +Y Sbjct: 304 GIENYSRHLVGSAPGQPPCTLLDYFPDDFLIIVDESHITLPQVRGMYFGDRSRKKTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP ++E + + + EQIIRPTGL+DP + Sbjct: 364 GFRLPSALDNRPLNFEEFETHINQMMFVSATPSTYEADH-ELLRAEQIIRPTGLLDPEIS 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ +IL+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVGEINKEVEKHNKILITTLTKRMAEDLTDYIREAGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD+IT S++ AIDET RRRE Q ++N++H I PQ++K+ + ++I Sbjct: 543 NAEGHVIMYADSITDSMRAAIDETNRRREIQQKYNEEHGITPQTIKKAVRDLIAISKAAS 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ D + S+ ++ + K L K+M AA LNFEEAA++RD +K +K Sbjct: 603 ASEEEFRKDPE--SMDARELEKLAKELTKKMRQAAAELNFEEAAKLRDRMKEVK 654 >gi|299821908|ref|ZP_07053796.1| excision endonuclease subunit UvrB [Listeria grayi DSM 20601] gi|299817573|gb|EFI84809.1| excision endonuclease subunit UvrB [Listeria grayi DSM 20601] Length = 657 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/658 (55%), Positives = 469/658 (71%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+ G++ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPKAIEKLVAGLNKGIKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y M+V L+ G + + +LL LV QY R Sbjct: 125 SATASLFERRDVIIIASVSCIYGLGSPEEYGAMLVSLRTGMEIGRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ RV FG++IE I E LTG+ I + E + I+ Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEIIGDREHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT R L AM IK ELK RL EL +LLEAQRLEQR YDLEM+E G C Sbjct: 245 PASHFVTRRDILEKAMVNIKTELKDRLKELRDNDKLLEAQRLEQRTNYDLEMMEEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D + +DESHVT+PQI MY GD RK L ++ Sbjct: 305 GIENYSRHLALRAPGSTPYTLLDYFPDDFQMVIDESHVTMPQIRAMYNGDQARKQVLIDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE+ +I EQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEKHVNQIMYVSATPGPYELEKNPDVI-EQIIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ DEI + R+L+T LTK+M+EDLT+YL E ++V+Y+HSEVKTLE Sbjct: 424 VRPIPGQIDDLMDEIAERVTKNERVLITTLTKKMSEDLTDYLKEAGVKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DVLVGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGVYDVLVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD T S+ AI+ET RRRE Q+ +N++H I PQ++K+ I I + + Sbjct: 544 NENGKVIMYADRYTDSMTNAINETQRRREIQIAYNEEHGITPQTIKKDIRGAITATVAAE 603 Query: 741 AAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T+IS ++K++ A ++ + ++M AA L+FE AA +RD + +K+ Sbjct: 604 EEEAELTDIS------KMTKEERAAFIEEMEREMKQAAKALDFERAAELRDALLEIKA 655 >gi|328881646|emb|CCA54885.1| Excinuclease ABC subunit B [Streptomyces venezuelae ATCC 10712] Length = 731 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/696 (52%), Positives = 485/696 (69%), Gaps = 34/696 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ ++Y PSGDQPAAIA L + I + EK +LLG TG+GK+ T A +IE Sbjct: 26 VSKIERSVAPFEVVSEYKPSGDQPAAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIE 85 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 86 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 145 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+G+ V++ +LL Sbjct: 146 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEVDRDQLLR 205 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 206 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 264 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + ++ SHYV + A+ I+ EL+ RL EL+K+G+ LE+QRL R TYD+ Sbjct: 265 ISEDRELYVFPASHYVAGPERMERAVNDIERELEGRLAELDKQGKHLESQRLRMRTTYDI 324 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS + GR PG P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 325 EMMRQIGSCSGIENYSMHFDGREPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 384 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 385 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGTYELSRGDG-FVEQIIR 443 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI L ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 444 PTGLVDPEVVVKPTEGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYFLELGIQVR 503 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADK+GFLRS TS Sbjct: 504 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTS 563 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N +H I+PQ +++KI Sbjct: 564 LIQTIGRAARNVSGQVHMYADRITPAMEQAIDETNRRREKQIAYNTEHGIDPQPLRKKIN 623 Query: 731 EVIDPILLEDAATTNI------------SIDAQQLSLS----KKKGKAH----------- 763 +++ I E+ T + A SL+ K KGKA Sbjct: 624 DIVATIAREEIDTEELLGTGYRQGKEGKGTKAPVPSLAAHGVKGKGKAGSTVELGDRPAT 683 Query: 764 -----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA L FE AAR+RDE+ LK Sbjct: 684 ELAAIIEEMTDRMRAAAAELQFEVAARLRDEVGELK 719 >gi|110802378|ref|YP_697624.1| excinuclease ABC subunit B [Clostridium perfringens SM101] gi|169344081|ref|ZP_02865067.1| excinuclease ABC, B subunit [Clostridium perfringens C str. JGS1495] gi|123146341|sp|Q0SW76|UVRB_CLOPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|110682879|gb|ABG86249.1| excinuclease ABC, B subunit [Clostridium perfringens SM101] gi|169297816|gb|EDS79913.1| excinuclease ABC, B subunit [Clostridium perfringens C str. JGS1495] Length = 659 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/663 (53%), Positives = 469/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL ++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSISIIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + I+ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIKGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPIEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|18309285|ref|NP_561219.1| excinuclease ABC subunit B [Clostridium perfringens str. 13] gi|20141966|sp|Q46323|UVRB_CLOPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|18143961|dbj|BAB80009.1| excinuclease ABC subunit B [Clostridium perfringens str. 13] Length = 659 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL +++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + I+ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|110799055|ref|YP_694760.1| excinuclease ABC subunit B [Clostridium perfringens ATCC 13124] gi|168212778|ref|ZP_02638403.1| excinuclease ABC, B subunit [Clostridium perfringens CPE str. F4969] gi|123050084|sp|Q0TUD0|UVRB_CLOP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|110673702|gb|ABG82689.1| excinuclease ABC, B subunit [Clostridium perfringens ATCC 13124] gi|170715774|gb|EDT27956.1| excinuclease ABC, B subunit [Clostridium perfringens CPE str. F4969] Length = 659 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL +++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + ++ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYEDEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|262038457|ref|ZP_06011831.1| excinuclease ABC, B subunit [Leptotrichia goodfellowii F0264] gi|261747552|gb|EEY35017.1| excinuclease ABC, B subunit [Leptotrichia goodfellowii F0264] Length = 662 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/655 (52%), Positives = 484/655 (73%), Gaps = 7/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI ++++ I + Q+LLGVTGSGKTFT+A VIE + RPA++MA Sbjct: 8 FKIHSKFQPTGDQPQAIDKIVENIENGITDQILLGVTGSGKTFTVANVIERINRPALIMA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N++ID++RH Sbjct: 68 PNKTLAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIMQTDTYIEKDSSVNDEIDKLRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D I+V+SVS IYG+GS E+Y + + + + ++ EL+ L+ +Y+R Sbjct: 128 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVSTGFDRNELIKRLISLRYERN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +++ PS+ +D +R FG+D+E I+E LTGQKIR ++ + I Sbjct: 188 DIAFERGKFRVKGDVLDLHPSY-QDTGYRFEFFGDDLESIAEINTLTGQKIREIQRLTIM 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY++ + + IK EL R+ E++ +LLEAQR++QR YDLEM+ G C+ Sbjct: 247 PATHYLSTEDS-EKMFESIKSELHDRINFFERQNKLLEAQRIKQRTEYDLEMIAEIGYCK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYLTG+N GE P TL +Y P+D ++F+DESH+++PQI+GMY+GD RK +L Sbjct: 306 GVENYSRYLTGKNEGEAPDTLIDYFPDDMVVFLDESHISVPQINGMYKGDRARKESLVNN 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ P + +SATP +ELEQ + I+EQ++RPTG+V+P +E Sbjct: 366 GFRLPSAFDNRPLKFEEFFAKVPQVVYISATPSDYELEQSKEEIIEQLVRPTGIVEPDIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEI + + R+L+T LTK+MAE+LT+Y E I+V+YMHS++ TLE Sbjct: 426 IRPTKNQIDDLMDEIKIRTAKKERVLVTTLTKKMAEELTDYYLEFGIKVKYMHSDIDTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR LR G+FDVLVGINLLREGLDIPE LVAIL+ADKEG+LRS+ SLIQT+GRAAR Sbjct: 486 RTEIIRGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTMGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME-VIDPILLE 739 NVN +VILYADT+T S++ AIDE RRRE Q ++N +NINP++++ +I E ++D +++ Sbjct: 546 NVNGQVILYADTVTGSMKEAIDEVNRRREVQEKYNIDNNINPRTIEREIAESIVDYEIIK 605 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + D + + +K+ +K L K++ AA+ LNFEEA ++RD++ LK Sbjct: 606 EDSVDKVKKDYKNQAEIEKE----IKRLNKEIKKAAEELNFEEAIKLRDKMNELK 656 >gi|284031044|ref|YP_003380975.1| excinuclease ABC subunit B [Kribbella flavida DSM 17836] gi|283810337|gb|ADB32176.1| excinuclease ABC, B subunit [Kribbella flavida DSM 17836] Length = 701 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/688 (52%), Positives = 479/688 (69%), Gaps = 26/688 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 +++ + + ++ D+ P+GDQPAAI +L + I++ E+ +LLG TG+GKT T+A + E Sbjct: 4 VSDLQRMVAPLKVVADFEPAGDQPAAIDELERRINAGEQDVVLLGATGTGKTATIAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +++ PNK LAAQ +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS Sbjct: 64 RIQRPMLILQPNKTLAAQFANELRQFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV++VSCIYG+GS + Y ++ +K+GD ++ LL Sbjct: 124 INEEVERLRHSATWSLLTRRDVVVVATVSCIYGLGSADEYLNRMIHVKVGDETDRDGLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY R D+ RGTFRV GD++E+FP + +++A RV FG++IE + +PLTG+ Sbjct: 184 KLVGVQYARNDLAGTRGTFRVRGDTLEVFPVY-QELAVRVEFFGDEIERLMTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + + I A +HYVT + A+ I+ EL RL ELE+ G+LLEAQRL R TYD+ Sbjct: 243 LSEEDELYIGAATHYVTAPERMEHAIASIEAELADRLAELERGGQLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G+C IENYSR+ GR PG P L +Y PED LL +DESHVT+PQI GMY GD Sbjct: 303 EMMRQIGTCSGIENYSRHTDGRAPGTAPHCLLDYFPEDFLLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS MDNRPLR+EE+ T+ +SATPG +E ++ G VEQIIR Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGQYEQDKSDGF-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ + Q++D+ EI L ++ R+L+T LTK+M+EDLT+YL E IR R Sbjct: 422 PTGLIDPEVIVKPTKGQIDDLIHEIRLRVERDERVLVTTLTKKMSEDLTDYLLEMGIRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS S Sbjct: 482 YLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ V +YAD IT S++ AIDET RRR KQ+ +N +H ++PQ +++KI Sbjct: 542 LIQTIGRAARNVSGAVFMYADKITPSMEQAIDETNRRRAKQVAYNLEHGVDPQPLRKKIA 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKK----KGKAH--------------------LKS 766 ++ D + EDA T + + + S K GKA ++ Sbjct: 602 DITDMLAREDADTAELLGNGRTQSRGKAPVPGGGKAKAGEKAKELAGGMPSSDLAELIQQ 661 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 L QMH AA L FE AAR RDEI LK Sbjct: 662 LTDQMHNAAAELQFEVAARYRDEISELK 689 >gi|297559941|ref|YP_003678915.1| excinuclease ABC subunit B [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844389|gb|ADH66409.1| excinuclease ABC, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 699 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/686 (51%), Positives = 478/686 (69%), Gaps = 28/686 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++ P+GDQP AIA++ + + E +LLG TG+GKT T+A +E +QRP +VM Sbjct: 14 FEVISEMTPAGDQPGAIAEISRRVRDGEPHTVLLGATGTGKTATVAWTVEQLQRPTLVMQ 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ +E + P+NAVEYFVSYYDYYQPEAYVP++DT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQFANELRQMLPNNAVEYFVSYYDYYQPEAYVPQSDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+G+ + Y + QL +G V++ +LL LV+ QY R Sbjct: 134 SATNSLLTRRDTIVVASVSCIYGLGTPQEYVDRMAQLAVGMEVDRDDLLRRLVEMQYSRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+IEI P + E++A R+ MFG+++E + +PLTG+ + + I+ Sbjct: 194 DTAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEVERLLTLHPLTGEVLGESREMFIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV A+ I+ EL RL ELE +G+LLEAQRL R T+DLEM+ G+C Sbjct: 253 PASHYVAGEERTERAIATIEAELGERLAELEAQGKLLEAQRLRMRTTHDLEMMRQLGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PG PP TL +Y PED LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHFDGREPGSPPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDAARKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ ++ +SATPG +EL Q G +VEQ+IRPTGLVDP V Sbjct: 373 GFRLPSALDNRPLKWEEFTERIGQSVYLSATPGRYELRQGGGEVVEQVIRPTGLVDPEVL 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI + A++ R+L+T LTK+M+EDLT+Y E IRVRY+HSEV TL Sbjct: 433 VKPTDGQIDDLVHEIRVRAERDERVLVTTLTKKMSEDLTDYFTELGIRVRYLHSEVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 493 RVELLRELRVGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +V +YAD +T S++ AIDET RRR+KQL +N +H I+P ++++I +++D + ED Sbjct: 553 NVAGQVHMYADNVTDSMRAAIDETNRRRDKQLAYNAEHGIDPTPLRKQIADILDTLNRED 612 Query: 741 AATTNI-----------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 T + S D + ++ G ++ L +QMH AA + Sbjct: 613 VDTEELMATGYRSSGGRGGRAPVPALGERSADVSAMPRAELAGL--IEQLSEQMHQAATD 670 Query: 778 LNFEEAARIRDEIKRLKSSPYFQGLD 803 L FE AAR+RDEI LK +G+D Sbjct: 671 LQFELAARLRDEIGELKRE--LRGMD 694 >gi|168207435|ref|ZP_02633440.1| excinuclease ABC, B subunit [Clostridium perfringens E str. JGS1987] gi|170661207|gb|EDT13890.1| excinuclease ABC, B subunit [Clostridium perfringens E str. JGS1987] Length = 659 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL +++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + ++ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPIEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|302871765|ref|YP_003840401.1| excinuclease ABC, B subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574624|gb|ADL42415.1| excinuclease ABC, B subunit [Caldicellulosiruptor obsidiansis OB47] Length = 662 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/664 (56%), Positives = 488/664 (73%), Gaps = 18/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI L +GI EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A Sbjct: 4 FRLVSDFRPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + + L+ G + ++ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD +E+FP+ D A R+ FG++IE I+EF +TG+ I + I+ Sbjct: 184 DVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEIIGRRNHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A+K I+EEL+ RL EL G+L+EAQRLEQR YD+EML+ G C+ Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLNELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG PP TL +Y P+D ++FVDESHVTIPQ+ MY GD RK L EY Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFVDESHVTIPQVRAMYNGDKARKDALVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL++ IVEQIIRPTGLVDP +E Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q++ + EI ++ R+L+T LTK+MAE LT+YL + IRVRYMHS++ T+E Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+K+ I PQ+V++ I ++I+ Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKYGIVPQTVRKGIRQIIE------ 596 Query: 741 AATTNISIDAQQL----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 AT +++ + ++ +++K++ + ++K L ++M A L FE+AA++RD+I Sbjct: 597 -ATVSVAEEEEEKYEVVEKDIIKNMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKI 655 Query: 791 KRLK 794 LK Sbjct: 656 FELK 659 >gi|182418218|ref|ZP_02949518.1| excinuclease ABC, B subunit [Clostridium butyricum 5521] gi|237666176|ref|ZP_04526163.1| excinuclease ABC, B subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378036|gb|EDT75576.1| excinuclease ABC, B subunit [Clostridium butyricum 5521] gi|237658266|gb|EEP55819.1| excinuclease ABC, B subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 657 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/657 (54%), Positives = 472/657 (71%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L+ I++ + Q LLGVTGSGKTFTMA +IE +QRP IV+A Sbjct: 4 FKIHSKFKPTGDQPQAIEKLIDSINNDHRGQTLLGVTGSGKTFTMANIIERLQRPTIVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G E+ E++ LV+ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTLSLRTGMEKERNEIIKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS++I P+ + R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFSRGTFRVRGDSLDIIPASYSNKGIRIEFFGDEIDRIREFDVLTGSIIGDRNHVAIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + T++ A+ I++EL+ RL EL + +LLEAQRL QR YD+EM++ G C Sbjct: 244 PASHFATSKETVDRAIGKIEDELEERLRELNSQDKLLEAQRLRQRTNYDIEMIKEMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR+ G PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRILDGRDSGTPPKTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ + VSATP +EL+ + I EQIIRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKIKQVVFVSATPSQYELDNSEE-IAEQIIRPTGLLDPEIV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+Y EIN ++G R L+T LTKRMAEDLT+YL E ++ YMHSE+ T+E Sbjct: 423 IRPVTGQIDDLYGEINKTTERGFRTLVTTLTKRMAEDLTKYLTELGVKTTYMHSEIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II+DLR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIKDLRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N S+VI+YAD ITKS+ AI ET RRRE Q ++N++H I P ++ + + +VI+ + E Sbjct: 543 NSESRVIMYADNITKSMNKAIKETERRREIQTKYNEEHGITPTTIIKDVRDVIEATKVAE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D A + L+KK+ +K +M LAA NL FE AA +RD IK+L S+ Sbjct: 603 DTAEYKTD---ENKKLTKKQRDKLIKEYTNEMMLAAKNLQFERAAELRDIIKQLTSN 656 >gi|302391081|ref|YP_003826901.1| excinuclease ABC subunit B [Acetohalobium arabaticum DSM 5501] gi|302203158|gb|ADL11836.1| Excinuclease ABC subunit B [Acetohalobium arabaticum DSM 5501] Length = 663 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/660 (55%), Positives = 474/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L G+ + + Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FELISDYTPCGDQPEAIEKLQAGVETGMQHQTLLGVTGSGKTFTMANLIEQVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFPHNAVEYFVSYY+YYQPEAYVP+TDTYIEK++SINE+IDR+R Sbjct: 64 HNKTLAAQLCSEFREFFPHNAVEYFVSYYNYYQPEAYVPQTDTYIEKDASINEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT L ER D I+V+SVSCIYG+GS Y + L+ G E+KE++ L+ QY+R+ Sbjct: 124 AATSDLFEREDVIIVASVSCIYGLGSPTDYLDLTCSLERGAVKERKEIIRELIYIQYERK 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG+FRV GD IEI P++ ED +RV +FG++++ I E +TG+ + + IY Sbjct: 184 DYDLDRGSFRVRGDVIEIHPAY-EDRVYRVELFGDEVDRIREIDSITGEIKEELGGLTIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A+K I+ EL+ RL EL + +LLEAQRLEQR YDLEMLE G CQ Sbjct: 243 PASHFVTKEEKLKRAIKSIRAELEERLKELRSQDKLLEAQRLEQRTRYDLEMLEEVGFCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D LL +DESH TIPQI GMY GD RK L E+ Sbjct: 303 GIENYSRHLADREPGSRPQTLIDYFPDDFLLLIDESHKTIPQIGGMYAGDRSRKEKLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ L + +SATPG +E E Q IVEQIIRPTGLVDP ++ Sbjct: 363 GFRLPSALDNRPLEFEEFESLINQAVYISATPGPYEEEHSQQ-IVEQIIRPTGLVDPKID 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+MAEDLTEYL ++VRY+HS++ T+E Sbjct: 422 VRPTEGQIDDLLAEIRKVVERDERVLITTLTKQMAEDLTEYLGSVGVQVRYLHSDIDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 482 RLEIIRDLRQGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 NVN +VI+Y D +T S+Q AI+ET RRR Q E N+++ I PQ++ + + EV+ P+ + Sbjct: 542 NVNGRVIMYGDKMTDSMQEAIEETNRRRRIQQEFNEENEITPQTIIKPVREVLRPVDMVA 601 Query: 739 EDAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E++ TT S + ++ ++ + + L +M A+DNL FE AA+IRDEI+ L S Sbjct: 602 EESNVEYTTEESDERDPEDMTAEEIEKLIIELEAEMEEASDNLEFELAAQIRDEIEELNS 661 >gi|84496576|ref|ZP_00995430.1| excinuclease ABC subunit B [Janibacter sp. HTCC2649] gi|84383344|gb|EAP99225.1| excinuclease ABC subunit B [Janibacter sp. HTCC2649] Length = 704 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/682 (51%), Positives = 487/682 (71%), Gaps = 30/682 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P+GDQPAAI L + I++ ++ +LLG TG+GK+ T A ++E +QRP +VMA Sbjct: 14 FQVVSDFEPAGDQPAAIKDLTERINAGQQNVVLLGATGTGKSATTAWLVEQVQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDY+QPEAYVP+TDTYIEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQLANEFRELLPNNAVEYFVSYYDYFQPEAYVPQTDTYIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+G+ + Y +VQL++GD +++ +LL V+ QY R Sbjct: 134 SATNSLLTRRDVIVVASVSCIYGLGTPQEYVDKMVQLRVGDELDRDDLLRRFVQMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG+++++I +PLTG+ +R+ + + ++ Sbjct: 194 DLAFTRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEVDKIYTLHPLTGEIVRDEQEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A+ I+ EL +L E +G+LLEAQRL R TYD+EM+ GSC Sbjct: 253 PASHYIAGPERMERAIAGIEHELAEQLKTFESQGKLLEAQRLRMRTTYDIEMMRQVGSCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L GR G P L +Y PED LL +DESHVT+PQI MY GD RK TL ++ Sbjct: 313 GIENYSMHLDGRTAGTAPNCLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ T+ +SATPG++E+ Q G+ VEQIIRPTGL+DP + Sbjct: 373 GFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGNYEMAQADGV-VEQIIRPTGLIDPEIV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EINL A + R+L+T LTK+MAEDLT+YL ++ +RVRY+HS++ TL Sbjct: 432 LKPTKGQIDDLLHEINLRAARNERVLVTTLTKKMAEDLTDYLLDKGVRVRYLHSDIDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 492 RVELLRELRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSARSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T S+Q A+DET+RRREKQ+ +N + ++PQ ++++I ++ D + ED Sbjct: 552 NVSGQVHMYADKVTPSMQEAVDETSRRREKQVAYNLERGVDPQPLRKRIADITDMLERED 611 Query: 741 A---------------------------ATTNISIDAQQLSLSKKKGKAHL-KSLRKQMH 772 A A +++ A +L A+L + L QMH Sbjct: 612 ADTEELLGSGRARSRGKSDGGRGGRGALAADAVTVGAGRLENIAAGDLANLIQELTTQMH 671 Query: 773 LAADNLNFEEAARIRDEIKRLK 794 AA +L+FE AAR+RDE+ LK Sbjct: 672 KAAADLHFELAARLRDEVGDLK 693 >gi|154499910|ref|ZP_02037948.1| hypothetical protein BACCAP_03567 [Bacteroides capillosus ATCC 29799] gi|150271508|gb|EDM98765.1| hypothetical protein BACCAP_03567 [Bacteroides capillosus ATCC 29799] Length = 656 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 470/655 (71%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L G+ + Q LLGVTGSGKTFTMAK IE +QRP +V+A Sbjct: 4 FEVVSEYKPAGDQPQAIEALANGVEMGLQEQTLLGVTGSGKTFTMAKTIEKLQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEK+++ N++IDR+R Sbjct: 64 HNKTLAAQLCAEFKEFFPNNSVEYFVSYYDYYQPEAYIPHTDTFIEKDAATNDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVVSSVSCIYG+G E +++M+V L++G +E+ LL LV+ +Y+R Sbjct: 124 SATCALLERRDVIVVSSVSCIYGLGEPEDFAKMMVSLRVGMEMERDVLLKRLVEIRYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R FRV GD++EI+P++ +D A RV FG++I+ ISE +TG IR + + I+ Sbjct: 184 DIAFERNMFRVRGDTVEIYPAYWKDSAIRVEFFGDEIDRISEVNAVTGTPIRILNHVPIW 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTP+ ++ A+ I +EL+ R+ E+E +L+EAQRL+QR+ YD+EM++ G C Sbjct: 244 PATHYVTPKEKMDAAIGEIYKELEERVAFFERENKLVEAQRLKQRVMYDIEMMQELGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + GR G PP TL +Y P+D L+F+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRVIEGRPAGTPPHTLLDYFPKDFLMFIDESHVTLPQVRAMYNGDHARKTTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F+E+ I VSATPG +E + G +VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPCAYDNRPLKFDEFEQRVNQVIYVSATPGEYERTRS-GQVVEQVIRPTGLLDPRIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+L+T LTKRMAEDLT YL I+VRYMH ++ T+E Sbjct: 423 VRPVEGQIDDLIGEINARTERKERVLVTTLTKRMAEDLTAYLKNAGIKVRYMHHDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RQEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT S++ AIDET RRREKQ NK H I P++V + + +I+ L Sbjct: 543 NADGLVIMYADKITPSMRAAIDETERRREKQDAFNKAHGIVPKTVVKSVRNLIE---LSG 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D Q ++K++ + L K+M A+ L FE AA +RD+I +L+ Sbjct: 600 EVEETKKFDFNQKQMTKQQRLEAIAKLEKEMKEASKMLEFEYAAILRDKIIKLRG 654 >gi|222150759|ref|YP_002559912.1| excinuclease ABC subunit B [Macrococcus caseolyticus JCSC5402] gi|222119881|dbj|BAH17216.1| excinuclease ABC subunit B [Macrococcus caseolyticus JCSC5402] Length = 657 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 472/655 (72%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI ++++GI ++ Q LLG TG+GKTFTM+ VIE + +P ++MA Sbjct: 6 FKIHSDYQPAGDQPDAIEKIVQGIKEGKRYQTLLGATGTGKTFTMSNVIERVGKPTLIMA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 66 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I++SSVSCIYG+G+ E Y ++V +++G +E+ +LL LV QY R Sbjct: 126 SATSALFERDDVIIISSVSCIYGLGNPEEYRDLVVSVRVGMEMERNQLLRKLVDVQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ R+ FG++IE I E LTG+ ++ E I+ Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASRDEQCIRIEFFGDEIERIREINYLTGEVLKEREHFAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L + EG+LLEAQRLEQR YDLEM+ G C Sbjct: 246 PASHFVTREEKMKLAIERIEKELEEQLKKFRDEGKLLEAQRLEQRTNYDLEMMREMGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 306 GIENYSLHLTLRPRGSTPYTLLDYFGDDWLIMMDESHVTVPQVRGMYNGDQARKNVLVDH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFEQKGHQFLYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ++ Q++D+ +EI + ++ R+L+T LTK+M+EDLT YL E I+V Y+HSE+KTLE Sbjct: 425 VRPSQHQIDDLIEEIRVRIEKNERVLITTLTKKMSEDLTIYLKEAGIKVNYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSQRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT+S+Q AIDET+RRR Q +N++H I P ++ +KI +VI L D Sbjct: 545 NEQGRVIMYADKITESMQFAIDETSRRRSIQEAYNEEHGITPTTINKKIRDVISATLETD 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + Q+ L+KK+ ++ L +M AA L+FE A +RD + LK+ Sbjct: 605 EEKKPV----QKKKLTKKERARTIEQLEHEMKEAAKALDFERATELRDALFELKA 655 >gi|260893664|ref|YP_003239761.1| excinuclease ABC, B subunit [Ammonifex degensii KC4] gi|260865805|gb|ACX52911.1| excinuclease ABC, B subunit [Ammonifex degensii KC4] Length = 681 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/666 (53%), Positives = 474/666 (71%), Gaps = 4/666 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F+++ D+ P+GDQP AIA+L++G+ ++Q LLGVTGSGKTFTMA VI + RP + Sbjct: 1 MGLFKLRADFAPAGDQPQAIAKLVEGVRKGYRMQTLLGVTGSGKTFTMANVIAQLNRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+APNK LAAQL SEFK FFP NAVEYF+SYYDYYQPEAY+P+ D YIEK++ INE+ID+ Sbjct: 61 VIAPNKTLAAQLCSEFKEFFPENAVEYFISYYDYYQPEAYLPQADLYIEKDALINEEIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RH+AT ++LER D IVV+SVSCIY +G+ Y +V L+ G+ ++ +L LV+ +Y Sbjct: 121 LRHAATAAVLERRDVIVVASVSCIYSLGNPVDYRDQVVSLRRGECYDRDSILRKLVRIRY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R + RG FRV GD +++FP+ + A RV FG+++E I EF PLTG + + Sbjct: 181 ERTEGDFTRGKFRVRGDVLDVFPASTSERAIRVEFFGDEVERILEFDPLTGDILGERYHV 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 + +HYVT L + I+EEL R+ + +GRLLEAQRLE R YDLEML G Sbjct: 241 SFFPATHYVTAPERLENIIAAIEEELAERVAWFKAQGRLLEAQRLETRTRYDLEMLREVG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYLTGR PGEPP TL +Y P D L+F+DESHVT+PQ+ GMY GD RK +L Sbjct: 301 YCKGIENYSRYLTGRAPGEPPYTLLDYFPPDFLVFIDESHVTVPQLHGMYEGDRSRKESL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS DNRPL+FEE+ I VSATPG +ELE + IVEQI+RPTGLVDP Sbjct: 361 VEYGFRLPSAFDNRPLKFEEFIERVNQVIFVSATPGPYELEHSEQ-IVEQIVRPTGLVDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+ +R + Q++D+ EI +G R+L+T LTKRMAEDL +YL E ++VRY+H+++ Sbjct: 420 PMVVRPTKGQIDDLLGEIRTRVARGERVLVTTLTKRMAEDLADYLREMGVKVRYLHADID 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 LER+ IIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS+ SLIQ GR Sbjct: 480 ALERMAIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQIAGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN VILYAD IT+S++ AI+ET RRR Q+E+N+KH I P++V++ + EVI+ Sbjct: 540 AARNVNGLVILYADRITESMRRAIEETERRRRLQIEYNQKHGIVPRTVEKPVREVIEATK 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 + + + ++L SK K A + +QM AA +L+FE AA++RD L++ Sbjct: 600 VAEEKGV-YEVRPKELPTSKLKSLA--AAYERQMREAAKSLDFELAAQLRDIWLELRAEL 656 Query: 798 YFQGLD 803 +G++ Sbjct: 657 VARGVE 662 >gi|226324390|ref|ZP_03799908.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758] gi|225206838|gb|EEG89192.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758] Length = 691 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/669 (53%), Positives = 479/669 (71%), Gaps = 8/669 (1%) Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 H+S H+ F+++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTM Sbjct: 24 HKSSPQGGHA-----FKLKAPYEPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTM 78 Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 A VI+ +Q+P +V+A NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP +DTYI Sbjct: 79 ANVIQQLQKPTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYI 138 Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 K+S+IN++ID++RHSAT +L ERND I+V+SVSCIYG+GS Y +M++ L+ G ++ Sbjct: 139 AKDSAINDEIDKLRHSATAALSERNDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDR 198 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 E+L LV+ QY R D+ RGTFRV GD +EIFP++ E +A+RV FG++I+ I+E Sbjct: 199 DEVLKKLVEIQYDRNDMDFKRGTFRVRGDVVEIFPAYSEKIAYRVEFFGDEIDRITEIDT 258 Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 LTG+ + + + I+ SHYV + + A++ I+EEL+ ++ + E +LLEAQR+ +R Sbjct: 259 LTGEVLNVIGHVAIFPASHYVVSKENMERAIREIEEELEQQIRYFKGEDKLLEAQRISER 318 Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 +D+EM+ TG C IENYSR+LTG+ GEPP TL +Y P+D L+ +DESH TIPQI Sbjct: 319 TNFDIEMMRETGFCSGIENYSRHLTGQKAGEPPCTLIDYFPDDFLIMIDESHKTIPQIGA 378 Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MY GD RK TL +YGFRLPS DNRPL F E+ + VSATPG +E E + + Sbjct: 379 MYHGDQSRKTTLVDYGFRLPSAKDNRPLSFGEFESKIDQVLFVSATPGEYE-ESHELLRA 437 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQ+IRPTGL+DP VE+R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E Sbjct: 438 EQVIRPTGLLDPEVEVRPIEGQIDDLISEVNKETAKKNKVLITTLTKRMAEDLTDYMREL 497 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 IRV+Y+HS++ TLER EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFL Sbjct: 498 GIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFL 557 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+TSLIQTIGRAARN VI+YAD +T S+++AIDET RRRE Q+++N++H I PQ++ Sbjct: 558 RSETSLIQTIGRAARNAEGHVIMYADNMTDSMRMAIDETMRRREIQMKYNEEHGITPQTI 617 Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 K+ + ++I + + A + ++ S+S + + +K L KQM AA LNFE AA Sbjct: 618 KKSVRDLIS--ISKKVAAEEMKLEKDPESMSAAELEKLIKKLEKQMKKAAAELNFEAAAE 675 Query: 786 IRDEIKRLK 794 +RD++ LK Sbjct: 676 LRDKLIELK 684 >gi|226227359|ref|YP_002761465.1| UvrABC system protein B [Gemmatimonas aurantiaca T-27] gi|259710327|sp|C1A4H0|UVRB_GEMAT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226090550|dbj|BAH38995.1| UvrABC system protein B [Gemmatimonas aurantiaca T-27] Length = 700 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/663 (53%), Positives = 472/663 (71%), Gaps = 8/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI +L G+H +++Q LLGVTGSGKT TMA VI RP +V++ Sbjct: 5 FRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPTLVLS 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K+FFP+NAVEYF+SYYDYYQPEAYVP +DTYIEK++SINE IDR+R Sbjct: 65 HNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDIDRLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SL+ER+D ++VS+VS IYG+G Y + +V L G + + ++L +LV QY R Sbjct: 125 RATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQYLRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E+ A R+ ++G++IE IS+ P+TG+ I +E + IY Sbjct: 185 DVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALERMAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T RPT+ A I++EL RL EL G+LLEAQRLEQR +DLEML G+C Sbjct: 244 PAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEIGTCA 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR GE P L +Y P+D L+ VDESHVT+PQI MY GD RK TL +Y Sbjct: 304 GIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ L P + VSATPG EL+ +G++VEQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLDPVLE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI ++G R+L+T LTKRM+EDLT+YL + +RVRYMHS++ +E Sbjct: 424 VRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDIDAIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R LRLG+FDVLVGINLLREGLD+PE LVAILDAD+EGFLRS SLIQTIGRAAR Sbjct: 484 RMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ ILY D IT S+Q AIDETTRRR Q EHN+ H I P+ V + + EV + D Sbjct: 544 NLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSVDEVRFITRVAD 603 Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A A + ++ S+++ + + L M AA L+FE AAR+RD++ + Sbjct: 604 ARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRDQLFEV 663 Query: 794 KSS 796 +++ Sbjct: 664 RTA 666 >gi|302385224|ref|YP_003821046.1| excinuclease ABC, B subunit [Clostridium saccharolyticum WM1] gi|302195852|gb|ADL03423.1| excinuclease ABC, B subunit [Clostridium saccharolyticum WM1] Length = 661 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/660 (53%), Positives = 472/660 (71%), Gaps = 15/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA VI+ +QRP +++A Sbjct: 3 FILHSEYDPTGDQPQAIDQLVKGFQEGNQFQTLLGVTGSGKTFTMANVIQKLQRPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 123 SATAALSERKDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVHKLIDIQYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP++ A+RV FG+++E I+E LTG+ + + I+ Sbjct: 183 DMDFRRGTFRVRGDVVEIFPAYSGSEAYRVEFFGDEVERITEIDTLTGEIRAELGHVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R + A + I EELK ++ + E +LLEAQR+ +R +D+EM++ TG C Sbjct: 243 PASHYVVSREKMELAAQTILEELKEQVAYFKSEDKLLEAQRISERTNFDVEMMKETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PP TL +Y P+D L+ VDESH+T+PQ+ GM+ GD RK TL + Sbjct: 303 GIENYSRHLTGGRPGDPPYTLIDYFPDDFLIIVDESHITLPQVRGMFAGDRSRKTTLVNF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + VEQIIRPTGL+DP ++ Sbjct: 363 GFRLPSALDNRPLNFEEFESKINQMMFVSATPSVYEAEH-ELLRVEQIIRPTGLLDPEID 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNKEISKKNKVLITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+++AI+ET RRR Q +N++H I P ++K+ + ++I Sbjct: 542 NSEGHVIMYADKVTDSMRVAIEETNRRRAIQQLYNEEHGITPTTIKKSVRDLI------- 594 Query: 741 AATTNISIDAQQ------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + +I+ ++ S+ K+ + K L K+MH AA LNFEEAAR+RD + ++K Sbjct: 595 -AISKAAIEEEKDFKKDPESMDAKELEKLAKELTKKMHQAAAELNFEEAARLRDRMVQIK 653 >gi|182624512|ref|ZP_02952295.1| excinuclease ABC, B subunit [Clostridium perfringens D str. JGS1721] gi|177910320|gb|EDT72701.1| excinuclease ABC, B subunit [Clostridium perfringens D str. JGS1721] Length = 659 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/663 (53%), Positives = 469/663 (70%), Gaps = 16/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI L++ I + + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I PS R+ FG++I+ I EF LTG I + + I Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ TL +++ I++EL+ RL L E ++LEAQRL+QR YD+EM+ G CQ Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK +L E+ Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATPG +EL+ + I+ EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+Y EI Q+G R+L+T LTKRMAEDLT+YL + N++ YMHS++ TLE Sbjct: 423 IRPIHGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIR+LRLG+ DVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ +I ET RRR Q+E+N++HNI P +V + + ++I+ Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T +S + + KK ++ ++M AA NL FE AA +RD IK L Sbjct: 597 --ATKVSEEKENYEDEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654 Query: 794 KSS 796 K + Sbjct: 655 KEN 657 >gi|310644265|ref|YP_003949024.1| excinuclease abc, b subunit [Paenibacillus polymyxa SC2] gi|309249216|gb|ADO58783.1| Excinuclease ABC, B subunit [Paenibacillus polymyxa SC2] Length = 663 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/655 (54%), Positives = 484/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+++ P GDQP AI +L++GI +K Q LLG TG+GKT+T+A+ I + RP +V+A Sbjct: 11 FEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTYTIAQTIAKLNRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH Sbjct: 71 HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS + YS +++ L++G + ++LS LV QY+R Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ + A RV +FG++IE I+E LTG+ I E I I+ Sbjct: 191 DINFVRGTFRVRGDVVEIFPASHGENAIRVELFGDEIERITEINVLTGELIGEREHIAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A+ I+ EL+ RL EL+++G+LLEAQRLEQR YD+EM+ G C Sbjct: 251 PASHFVTHEDTMRVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDIEMMREVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L E+ Sbjct: 311 GVENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +E+E+C +V+QIIRPTGL+DP +E Sbjct: 371 GFRLPSALDNRPLKFEEFEDKVNQIIYVSATPGPYEMEKCD-TMVQQIIRPTGLLDPIIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ++ Q++D+ +EI ++ R+L+T LTK+MAEDLT+YL E I+VRYMHSE+KTLE Sbjct: 430 VRPSKGQIDDLINEIRQRIEREERVLVTTLTKKMAEDLTDYLKEVGIKVRYMHSEIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLRLG FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+Y D IT S+ AI ET RRR Q+++N++H I PQ++++KI +VI+ + Sbjct: 550 NSDGRVIMYGDKITDSMDKAIKETERRRAIQIQYNEEHGITPQTIRKKIRDVIEAT--KT 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + N + + LSKK+ ++ ++ L +M AA NL FE AA +RD + L++ Sbjct: 608 AESKNDYLPNETGKLSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLELRA 662 >gi|295401557|ref|ZP_06811526.1| excinuclease ABC, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109521|ref|YP_003987837.1| excinuclease ABC subunit B [Geobacillus sp. Y4.1MC1] gi|294976469|gb|EFG52078.1| excinuclease ABC, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214622|gb|ADP73226.1| excinuclease ABC, B subunit [Geobacillus sp. Y4.1MC1] Length = 659 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/657 (56%), Positives = 478/657 (72%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AIA+L++GI K Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 5 FELVSAYQPQGDQPQAIAKLVEGIRKGVKHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G +E+ LL LV QY+R Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ I E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL ++G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRLAIENIEKELEERLRELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ I VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPE-VVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R L+T LTK+MAEDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQERVKRNERTLVTTLTKKMAEDLTDYLKEVGIKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADTITKS+++AI+ET RRR Q +N++H I PQ+VK++I +VI Sbjct: 544 NANGHVIMYADTITKSMEIAINETKRRRAIQEAYNREHGIVPQTVKKEIRDVIRATY--- 600 Query: 741 AATTNISIDAQ--QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA + DA+ ++KK+ + + L K+M AA L+FE AA++RD I LK+ Sbjct: 601 AAEEKETYDAKPSYSKMTKKEREQLIADLEKEMKEAAKALDFERAAQLRDIIFELKA 657 >gi|299143668|ref|ZP_07036748.1| excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518153|gb|EFI41892.1| excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 660 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/655 (54%), Positives = 474/655 (72%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L+ GI+ K Q LLGVTGSGKTFTMA VIE +Q+P +V+A Sbjct: 3 FKIHSSYVPTGDQPQAIDGLVDGINKNLKHQTLLGVTGSGKTFTMANVIERVQKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++ID++RH Sbjct: 63 HNKTLAYQLASEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G Y ++V L+ G ++ E++ L++ QY R Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMEKDRNEIMKRLIEIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +RGTFRV GD +EIFPS + + RV FG++I+ ISE LTG+ + + + IY Sbjct: 183 DLNFVRGTFRVRGDILEIFPSWSSENSIRVEFFGDEIDRISEINALTGEVLGYRKHVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + A+ I+EEL R+ EL+ + +LLEAQR+EQR YD+EML G C Sbjct: 243 PASHFATTEQKVKRAIVTIEEELNERVKELKDQEKLLEAQRIEQRTRYDIEMLSEMGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D L +DESH T+PQI MY GD RK TL +Y Sbjct: 303 GIENYSRHLSAREAGSRPYTLIDYFPKDFLTIIDESHATVPQIRAMYNGDRSRKQTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + I VSATPG +E E Q VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLKFEEFESIMNQCIYVSATPGPYEKEHEQN-KVEQIIRPTGLLDPVIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ +EI ++G R+L+T LTK+MAEDLT++ + ++V YMHS+V T+E Sbjct: 422 VRPTKYQIDDLINEIENVKERGERVLITTLTKKMAEDLTDHFKKIGMKVTYMHSDVDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGK+DVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT GRAAR Sbjct: 482 RMEIIRDLRLGKYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTAGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD TKS++ IDET RRR Q ++NK++ I P+SV++ I EVI+ + + Sbjct: 542 NVDGKVIMYADFETKSMKYTIDETNRRRFIQDKYNKENGIIPKSVEKGIREVIEATVAAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + SI+ S K+ A + +L+ +M+ +A+ L+FE AA IRD+I L++ Sbjct: 602 GVESYSSIN----EFSDKEILAMIDALKNEMYKSAEQLDFERAAEIRDKITELRA 652 >gi|302561243|ref|ZP_07313585.1| excinuclease ABC, B subunit [Streptomyces griseoflavus Tu4000] gi|302478861|gb|EFL41954.1| excinuclease ABC, B subunit [Streptomyces griseoflavus Tu4000] Length = 716 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/710 (51%), Positives = 484/710 (68%), Gaps = 55/710 (7%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y P+GDQP AIA L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERSVAPFEVVSPYQPNGDQPTAIADLARRIGAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V L++GD ++ ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEFDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + + I+ SHYV L A+ I++EL RL +LEK+G+LLEAQRL R TYD+ Sbjct: 243 ISDDQQLYIFPASHYVAGPERLERAVNDIEKELGERLTDLEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC +ENYS + GR+PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G +VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-VVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNTANGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLS-----KKKGKA----------------------- 762 +++ I ED ID +QL S KK G Sbjct: 602 DIVAQIARED-------IDTEQLLGSGYRQAKKDGGGTKAPVPSLGGKAAKAAKGAKSAK 654 Query: 763 ------------------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +M AA +L FE AAR+RDE+ +K Sbjct: 655 GRAAETVPTDRPAAELTEQIEELTARMRTAAADLQFEIAARLRDEVSEMK 704 >gi|72161600|ref|YP_289257.1| excinuclease ABC subunit B [Thermobifida fusca YX] gi|90111057|sp|Q47QN5|UVRB_THEFY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71915332|gb|AAZ55234.1| Excinuclease ABC subunit B [Thermobifida fusca YX] Length = 701 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/677 (52%), Positives = 483/677 (71%), Gaps = 24/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD P+GDQPAAI +L + I +LLG TG+GKT T+A +IE +QRP +V+ Sbjct: 14 FEVVTDMVPAGDQPAAIEELARRIQGGAADTVLLGATGTGKTATVAWLIERLQRPTLVIQ 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ +E + PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH Sbjct: 74 PNKTLAAQFANELREMMPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ + Y + +++G +++ ELL LV+ QY R Sbjct: 134 SATTALLTRRDTVVVASVSCIYGLGTPQEYVDRMATVEVGMEIDRDELLRRLVEMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + +++A R+ MFG++IE + +P+TG+ + + + I+ Sbjct: 194 DVAFTRGTFRVRGDTVEIIPVY-DELAVRIEMFGDEIERLMTLHPITGEVLGESDRVYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL+ RL ELE G+LLEAQRL R TYD+EMLE G+C Sbjct: 253 PASHYVAGPERMRKAIAGIQAELEERLAELEAAGKLLEAQRLRMRTTYDVEMLEQMGTCA 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL +Y PED L+ +DESHVT+PQI GMY GD RK TL E+ Sbjct: 313 GVENYSRHFDGRAPGSPPNTLLDYFPEDFLVVIDESHVTVPQIGGMYEGDAARKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL ++E+ T+ +SATPG +ELE+ G +VEQ+IRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLTWDEFRERTGQTLYLSATPGPYELERVGGDVVEQVIRPTGLVDPEVI 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI + A++ R+L+T LTK+MAEDLT+YL + IRVRY+HSE+ TL Sbjct: 433 VKPTEGQIDDLVHEIRIRAERDERVLVTTLTKKMAEDLTDYLTDLGIRVRYLHSEIDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 493 RVELLRELRVGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +V +YADT+T ++ AI+ET RRR KQL +N +H I+P+ +++KI +++D + ED Sbjct: 553 HVSGQVHMYADTVTDAMAAAIEETNRRRAKQLAYNAEHGIDPKPLRKKIADILDSLARED 612 Query: 741 AATTNI-----------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 A T + + Q +L +++ A ++ L +QMH AA + Sbjct: 613 ADTAELLARSRGEKRGTPTPRSGALSGPDRVAEQAKNLPREELAALVEQLTEQMHQAAAD 672 Query: 778 LNFEEAARIRDEIKRLK 794 L FE AAR+RDEIK LK Sbjct: 673 LQFELAARLRDEIKELK 689 >gi|225027283|ref|ZP_03716475.1| hypothetical protein EUBHAL_01539 [Eubacterium hallii DSM 3353] gi|224955385|gb|EEG36594.1| hypothetical protein EUBHAL_01539 [Eubacterium hallii DSM 3353] Length = 664 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/655 (53%), Positives = 474/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI +L+KG + + LLGVTGSGKTFTMA VI + +P +++A Sbjct: 4 FELVSDFAPTGDQPQAIEELVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVVSSVSCIYGIGS Y++M++ L+ G +++ E++ L+ QY R Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKNDYAKMMISLRPGMEIDRDEVVRRLIDIQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FRV GD +E+ P S ED A + FG++I+ I + LTG+ ++ I Sbjct: 184 ELDFKRGSFRVRGDVLEVVPVSSFED-AIHIEFFGDEIDRIMQVDVLTGEIKASLNFAII 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHYV P+ + A+K IKEEL R+ ++ +LLEAQR+ +R +D+EML+ TG C Sbjct: 243 FPASHYVVPQEQIERAVKTIKEELDERVEYFKENDQLLEAQRISERTNFDIEMLKETGFC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTG PG+ P TL ++ +D L+ VDESH+TIPQ+ GMY GD RK TL + Sbjct: 303 SGIENYSRHLTGLEPGKAPYTLIDFFGDDFLMIVDESHITIPQVRGMYAGDRSRKQTLVD 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL F+E+ + VSATP +E E + + EQIIRPTGL+DPP+ Sbjct: 363 FGFRLPSALDNRPLNFDEFEERIDQMLFVSATPNVYEGEH-EMLRAEQIIRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R Q++D+ EIN + ++L+T LTKRMAEDLT Y+ E +IRV+Y+HS++ TL Sbjct: 422 DVRPVEGQIDDLISEINKEVAKKNKVLVTTLTKRMAEDLTAYMKELDIRVKYLHSDIDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI+RDLR+G FDVLVGINLLREGLDIPE L+AILDADKEGFLRS+TSL+QTIGRAA Sbjct: 482 ERIEIVRDLRMGVFDVLVGINLLREGLDIPEVTLIAILDADKEGFLRSETSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN VI+Y DTIT S++ AI ET RRRE Q+ +N++H I P+++++ I +VI E Sbjct: 542 RNAEGHVIMYGDTITDSMRAAITETKRRREIQMAYNEEHGITPKTIQKAIRDVISITNEE 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + S+ S+++K+ + L K+M+ AA LNFEEAA +RDE+K+ K Sbjct: 602 APEKSRGSLKKDMESMNRKELTEMIAKLTKKMNKAAAELNFEEAAELRDELKKYK 656 >gi|294617428|ref|ZP_06697062.1| excinuclease ABC, B subunit [Enterococcus faecium E1679] gi|291596334|gb|EFF27593.1| excinuclease ABC, B subunit [Enterococcus faecium E1679] Length = 664 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +IE + +P +++A Sbjct: 10 FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IV++SVSCI+G+GS Y + +V ++ G +++ +L+ LV Q++R Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV G+ +EIFP+ ++ A RV FG+++E I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGNVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK EL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ DESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +E EQ +I +QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S++LA+DET+RRR Q ++N++H I P+++ ++I ++I I E Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T ++ ++K++ L L K+M AA L+FE AA +RD I LK+S Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663 >gi|320161399|ref|YP_004174623.1| uvrABC system protein B [Anaerolinea thermophila UNI-1] gi|319995252|dbj|BAJ64023.1| uvrABC system protein B [Anaerolinea thermophila UNI-1] Length = 680 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/668 (53%), Positives = 473/668 (70%), Gaps = 24/668 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AI +L++GI + Q+LLG TG+GKTFTMA +I + PA+V+A Sbjct: 3 FKLHAPFQPMGDQPEAIEKLVEGIRQGMRHQVLLGATGTGKTFTMANIIARLNMPALVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP+ D YIEK++ INE+I+R+R Sbjct: 63 HNKTLAAQLYAEFKEFFPENAVEYFVSYYDYYQPEAYVPQRDLYIEKDADINEEIERLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ R D I+V+SVSCIYG+GS E Y + V L++G + LL LV+ QY+R Sbjct: 123 SATTALMTRRDVIIVASVSCIYGLGSPEEYGKKAVTLEVGHIYRRNALLRILVESQYQRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + G FRV G+++E+FP++ E A+R+ FG+++E I EF PLTG+ I I+ Sbjct: 183 DVELRPGVFRVRGETLEVFPAYEERRAYRIQFFGDEVERILEFNPLTGEVYGQPAQISIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT +L A++ I+EEL+ R+ + +G+LLEAQR+EQR YDLEML G C Sbjct: 243 PAKHYVTKEESLEKAIQDIEEELQERIAFFKSQGKLLEAQRIEQRTLYDLEMLREVGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG PP TL +Y+P + LLF+DESH++IPQI GMY GD RK L +Y Sbjct: 303 GIENYSRHLDQRPPGSPPWTLIDYLPSEYLLFIDESHMSIPQIRGMYNGDRSRKQVLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I SATPG +E+ + + +VEQIIRPTGLVDP VE Sbjct: 363 GFRLPSALDNRPLKFDEFEQHMGYVIYTSATPGPYEMARAEQ-VVEQIIRPTGLVDPEVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + + G R+L+T LTKRMAEDL+EYL E I+V Y+HSEV+TLE Sbjct: 422 VRPTTGQIDDLIHEIRMRIEVGERVLVTTLTKRMAEDLSEYLMELGIKVHYLHSEVETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLRLG FDV+VGINLLREGLD+PE LVAILDADKEGFLRS T+LIQTIGRAAR Sbjct: 482 RVGILRDLRLGVFDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI+YAD IT ++++AIDET RRR KQ+ +N+K I P S+++ + ++ Sbjct: 542 NVHGKVIMYADYITDAMRMAIDETNRRRAKQMAYNEKMGIIPVSIQKAVHDI-------- 593 Query: 741 AATTNISIDAQQLS---LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787 T + + Q ++ S + GK+H ++ L KQM AA NL FE AA +R Sbjct: 594 --TQQMGVQPQMVAEKGGSYRTGKSHGLARHELQRMIQELEKQMKEAARNLEFERAAALR 651 Query: 788 DEIKRLKS 795 DE+ LK+ Sbjct: 652 DEMFELKA 659 >gi|205375098|ref|ZP_03227889.1| excinuclease ABC subunit B [Bacillus coahuilensis m4-4] Length = 658 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/663 (53%), Positives = 477/663 (71%), Gaps = 12/663 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F +Q+ Y P GDQPAAI ++++GI ++ Q LLG TG+GKTFTM+ VI+ + +P + Sbjct: 1 MNVFDLQSHYSPQGDQPAAIKEIVQGIQDGKRHQTLLGATGTGKTFTMSNVIKEVNKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 ++A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+ Sbjct: 61 IIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSAT SL ERND I+++SVSCIYG+GS E Y +++V L++G +E+ +LL LV QY Sbjct: 121 LRHSATSSLFERNDVIIIASVSCIYGLGSPEEYKELVVSLRVGMEIERNQLLRRLVDVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R DI RGTFRV GD +EIFP+ ++ R+ FG++I+ I E LTG+ + + Sbjct: 181 ERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEIDRIREVDALTGEIFGERDHV 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I+ SH+VT + A++ I++EL+ +L ++++G+LLEAQRLEQR YDLEM+ G Sbjct: 241 AIFPASHFVTREEKMRVAIENIEKELEEQLEMMKEDGKLLEAQRLEQRTRYDLEMMREMG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+LT R PG P TL +Y P+D LL +DESHVT+PQI GM+ GD RK L Sbjct: 301 FCSGIENYSRHLTLRPPGSTPYTLIDYFPKDFLLIIDESHVTLPQIRGMFNGDQARKQVL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS MDNRPL F E+ + VSATPG +E+E +VEQIIRPTGL+DP Sbjct: 361 VDHGFRLPSAMDNRPLTFNEFEEKSHQLVYVSATPGPYEMEHTPQ-MVEQIIRPTGLLDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +++R Q++D+ EI+ ++ R+L+T LTK+M+EDLT+YL E I+V+Y+HSE+K Sbjct: 420 TIDVRPIEGQIDDLLGEIHERIERNERVLVTTLTKKMSEDLTDYLKEIGIKVQYLHSEIK 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIRDLRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGR Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N VI+Y D +T S++ AI ET RRR Q E+N+KH I PQ++++ + +VI Sbjct: 540 AARNSNGHVIMYGDRMTDSMEKAISETARRRTIQEEYNEKHGITPQTIQKAVRDVIRATQ 599 Query: 738 LEDA-----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D T +++ +SK + + ++ L +M AA L+FE AA +RD I Sbjct: 600 ASDGHEAPDGTKSVT------KMSKPERENLIERLEVEMKDAARALDFERAAELRDTILE 653 Query: 793 LKS 795 LK+ Sbjct: 654 LKA 656 >gi|302550666|ref|ZP_07303008.1| excinuclease ABC, B subunit [Streptomyces viridochromogenes DSM 40736] gi|302468284|gb|EFL31377.1| excinuclease ABC, B subunit [Streptomyces viridochromogenes DSM 40736] Length = 715 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/702 (51%), Positives = 485/702 (69%), Gaps = 40/702 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + ++ + Y P+GDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERTVAPIEVVSPYQPNGDQPAAIAELARRIQAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+G+ +++ ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +P+TG+ Sbjct: 184 RFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPITGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + E + ++ SHYV + A+ I++EL RL ELEK+G+LLEAQRL R TYD+ Sbjct: 243 ISDDEQLYVFPASHYVAGPERMERAVNDIEKELGERLSELEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C +ENYS + GR PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGTCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++E+ + G +VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYLSATPGNYEMSRSDG-VVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AI+ET RRREKQ+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIEETNRRREKQIAYNTEQGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNI-------------SIDAQQLSLSKK--------KGKA------- 762 +++ I ED T + A SL K KGK Sbjct: 602 DIVAQIAREDVDTEQLLGTGYRKGRKDGGGTKAPVPSLGGKAAEAGKSAKGKGRSKETVP 661 Query: 763 ----------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +M AA L FE AAR+RDE+ +K Sbjct: 662 TDRPAAELAEQIEELTTRMRAAAAELQFEIAARLRDEVSEMK 703 >gi|303238155|ref|ZP_07324691.1| excinuclease ABC, B subunit [Acetivibrio cellulolyticus CD2] gi|302594201|gb|EFL63913.1| excinuclease ABC, B subunit [Acetivibrio cellulolyticus CD2] Length = 660 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 483/655 (73%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L +GI+ K Q LLGVTGSGKTFTMA VIE +Q+P +++A Sbjct: 4 FKIASEYKPCGDQPKAIDKLCEGINRGLKGQTLLGVTGSGKTFTMANVIERVQKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAY+ TDTYIEK++SINE+ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYIATTDTYIEKDASINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y+ +++ L+ G ++ E++ LV+ QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRKGMQKDRDEIIRKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RG FR GD +EIFPS+ D RV FG++I+ I+E LTG+ + ++ I+ Sbjct: 184 EIDFKRGKFRARGDVLEIFPSYSSDKVIRVEFFGDEIDRITEINYLTGEILGSMSHAAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T R + AM I++EL+ RL EL+++G+LLEAQRLEQR YDLEML+ G CQ Sbjct: 244 PASHYATTRSKMEKAMVNIEKELEERLKELKEDGKLLEAQRLEQRTRYDLEMLQEVGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG P TL +Y P+D L+ +DESHVT+PQ+ MY GD RK +L +Y Sbjct: 304 GIENYSRHISGREPGSSPYTLIDYFPDDFLMMIDESHVTVPQVGAMYNGDRSRKQSLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + VSATP ++E Q IVEQIIRPTGL+DP + Sbjct: 364 GFRLPSAFDNRPLKFNEFEERINQIVFVSATPAAYERNNSQQ-IVEQIIRPTGLIDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EIN Q+ R+L+T LTK+M+EDLT+YL E + +V+Y+HS++ T+E Sbjct: 423 VKPVKGQIDDLIGEINERIQKNERVLVTTLTKKMSEDLTDYLKELDFKVKYLHSDILTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YADT+T+S++ AI ET RRR+ Q+E+N++H I PQS+K+ + +VI+ + Sbjct: 543 NVEGKVIMYADTVTESMRKAISETNRRRKLQVEYNEEHGIIPQSIKKSVRDVIEATKAAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ S+ ++ +S+ + +A + L K+M AA +L FE AA +RD++ LKS Sbjct: 603 -ESSEYSVRREEEVISQGEAQAIIDRLTKEMKKAAADLQFERAAELRDKLNGLKS 656 >gi|269119848|ref|YP_003308025.1| excinuclease ABC subunit B [Sebaldella termitidis ATCC 33386] gi|268613726|gb|ACZ08094.1| excinuclease ABC, B subunit [Sebaldella termitidis ATCC 33386] Length = 657 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/650 (52%), Positives = 477/650 (73%), Gaps = 5/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI ++++ + + Q+LLGVTGSGKTFT+A VIE + RPA++MA Sbjct: 3 FKIHSDFKPTGDQPEAIEKIVENLENGVSDQILLGVTGSGKTFTVANVIERLNRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAYV TDTYIEK+SSIN++ID++RH Sbjct: 63 PNKTLAAQLYNEYKQFFPDNAVEYFVSYYDYYQPEAYVAVTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D I+V+SVS IYG+GS E+Y + + + + ++ +L+ LV +Y+R Sbjct: 123 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVSVGFDRNDLILRLVDLRYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++++P++ +D +R FG+D+E+ISE LTGQKIR ++ I I Sbjct: 183 DYAFERGKFRVNGDVVDLYPTY-QDTGYRFEFFGDDLEDISEINTLTGQKIRKIQRISIM 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY++ + T + IK EL R+ K+ LLEAQR++QR YDLEM+ G C+ Sbjct: 242 PATHYLSTEDS-ETMFREIKSELDERIEFFNKKNMLLEAQRIKQRTEYDLEMIAEIGFCK 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYLTG+ PGE P TL +Y P+D ++F+DESH+++PQI+GMY+GD RK +L + Sbjct: 301 GIENYSRYLTGKGPGETPDTLIDYFPKDLVVFLDESHISVPQINGMYKGDRARKQSLIDN 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRP+RFEE+ P + +SATPG +E+EQ + ++EQ++RPTG+V+P +E Sbjct: 361 GFRLPSAFDNRPMRFEEFFEKTPQVVYISATPGDYEMEQSKSEVIEQLVRPTGIVEPTIE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ DEI L ++G R+L+T LTK+MAE+LT+Y E ++V+YMHS+++TLE Sbjct: 421 VRPTKNQIDDLMDEIKLRVEKGERVLVTTLTKKMAEELTDYYLEYGLKVKYMHSDIETLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR LR G+FDVLVGINLLREGLDIPE LVAIL+ADKEG+LRS+ SLIQT+GRAAR Sbjct: 481 RIEIIRGLRRGEFDVLVGINLLREGLDIPEVALVAILEADKEGYLRSRRSLIQTMGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVILYAD IT S++ A+DE RRRE Q+E+NK+HNINP+++ KI + I + + Sbjct: 541 NVEGKVILYADRITGSMKEAMDEVERRREIQIEYNKEHNINPKTIVSKISDSIVDYEIGN 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + + +K ++ L K++ A+ LNFE+A RDE+ Sbjct: 601 EEKVDRIKKIYKDKKDIEK---EIRILEKEIRKLAEELNFEKAIAKRDEM 647 >gi|297195034|ref|ZP_06912432.1| excinuclease ABC subunit B [Streptomyces pristinaespiralis ATCC 25486] gi|297152598|gb|EFH31870.1| excinuclease ABC subunit B [Streptomyces pristinaespiralis ATCC 25486] Length = 704 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/691 (51%), Positives = 485/691 (70%), Gaps = 29/691 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + + PSGDQP AIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERTVAPFEVVSHFQPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +VQLK+GD +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDLAFQRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + +++ ++ SHYV + A+ I+ EL+ RL EL+K+G+LLE+QRL R TYD+ Sbjct: 243 LSEDQSLYVFPASHYVAGPERMEKAVNGIEAELEQRLAELDKQGKLLESQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS + R PG PP TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMMRQIGSCSGIENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFKERIGQTVYLSATPGTYELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLIDPQVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AI+ET RRREKQ+ +N ++ I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIEETNRRREKQIAYNTENGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAH--------------------------- 763 +++ I E+ T + + + ++K GK Sbjct: 602 DIVATIAREEIDTEELLGTGYRQAKAEKPGKGAKAPVPSLGAGRKGEILSDRPAAELAGI 661 Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA L FE AAR+RDE+ LK Sbjct: 662 IEEMTDRMRAAAAELQFEVAARLRDEVGELK 692 >gi|25028055|ref|NP_738109.1| excinuclease ABC subunit B [Corynebacterium efficiens YS-314] gi|259505606|ref|ZP_05748508.1| excinuclease ABC, B subunit [Corynebacterium efficiens YS-314] gi|23493339|dbj|BAC18309.1| putative xcinuclease ABC subunit B [Corynebacterium efficiens YS-314] gi|259166799|gb|EEW51353.1| excinuclease ABC, B subunit [Corynebacterium efficiens YS-314] Length = 701 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/672 (53%), Positives = 475/672 (70%), Gaps = 28/672 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAIA+L K + + E+ +LLG TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISEFQPAGDQPAAIAELDKRLTNGERDVVLLGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ +SY + LK+GD V++ L LV QY R Sbjct: 148 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSIVLKVGDEVDRDRFLRLLVDIQYDRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD+++I P++ E++A RV FG++I+ + +PLTG +RNV+ + I+ Sbjct: 208 DIAFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDEIDSLYYIHPLTGDVVRNVKEVHIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IK EL+ RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVADIKAELEDRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ R T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSALDNRPLTWEEFDARRGQTVFMSATPGKFEIAAAGGEFVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIHEIRGRTEKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK++ I+PQ +++KI +++D Sbjct: 567 NVSGEVIMYADKITDSMQYAIEETDRRREKQIAYNKEYGIDPQPLRKKIADILDQVYENQ 626 Query: 735 ------PILLEDAA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 P L DAA T+ + +D Q + L QM AA L FE Sbjct: 627 ESGVGAPGLTGDAAVVEKPDTSGMQVDQLQ---------KLIDDLSAQMAAAARELKFEL 677 Query: 783 AARIRDEIKRLK 794 A R+RDE+ LK Sbjct: 678 AGRLRDEVFELK 689 >gi|51891289|ref|YP_073980.1| excinuclease ABC subunit B [Symbiobacterium thermophilum IAM 14863] gi|81826261|sp|Q67T57|UVRB_SYMTH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|51854978|dbj|BAD39136.1| excinuclease ABC subunit B [Symbiobacterium thermophilum IAM 14863] Length = 659 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/656 (56%), Positives = 476/656 (72%), Gaps = 8/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI +L +G+ + Q+LLG TG+GKTFT+AKVIE +Q+P +V+A Sbjct: 4 FKVVAPFEPTGDQPQAIERLSEGVRRGAREQILLGATGTGKTFTIAKVIEQVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQL SEF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH Sbjct: 64 HNKILAAQLCSEFQQFFPENAVEYFVSYYDYYQPEAYIPTTDTYIEKDALINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y + V L++G+ V++ +L LV QY+R Sbjct: 124 SATMALFERRDVIIVASVSCIYGLGSPEDYRDLAVSLRVGNQVDRDYILRRLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D +R FRV GD +EIFP+ D A R +G++IE ISEF PLTG+ + + IY Sbjct: 184 DHNFVRNKFRVRGDVVEIFPAGATDRAIRCEWWGDEIERISEFDPLTGEITGTMTHVAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV A++ I+EEL+ RL EL +G+LLEAQRLEQR DLEM+ G C Sbjct: 244 PASHYVVADEKREQALRSIEEELEERLKELRAQGKLLEAQRLEQRTRNDLEMIREIGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL ++ P+D LL +DESHVTIPQ++ MY GD RK TL EY Sbjct: 304 GIENYSRHLTGRKPGEPPYTLLDFFPDDWLLVIDESHVTIPQVAAMYNGDRSRKETLIEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+F E+ I VSATPG +ELE+ ++VEQI+RPTGL+DP V Sbjct: 364 GFRLPSAADNRPLKFAEFEERINQVIYVSATPGPYELERVPPSLVVEQIVRPTGLLDPEV 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+Y EI ++ R+L+T LTKRMAEDLTEYL E ++VRYMHS+V+T+ Sbjct: 424 EVRPTKGQIDDLYAEIRARVKKNQRVLVTTLTKRMAEDLTEYLKELGVKVRYMHSDVETI 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 484 ERMQIVRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-L 738 RN KVI+YAD IT+S+Q AI+ET RRR Q +N+KH I P+++ + + +VI + + Sbjct: 544 RNAEGKVIMYADRITQSMQKAINETNRRRAIQEAYNRKHGIVPKTIVKPVRDVIQAVKPV 603 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +A NI +D + K K LRK+M AA +L+FE AA IRD I L+ Sbjct: 604 AEAGPANI-LDTPPHEIPKVVAK-----LRKEMMQAAKDLDFERAAEIRDIIFELE 653 >gi|311070019|ref|YP_003974942.1| excinuclease ABC subunit B [Bacillus atrophaeus 1942] gi|310870536|gb|ADP34011.1| excinuclease ABC subunit B [Bacillus atrophaeus 1942] Length = 661 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/656 (53%), Positives = 474/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI +K Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y +M++ L+ +E+ +LL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVLSLRTEMEIERNQLLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + + + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ +L + ++G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTRAEKMEKAILNIEKELEEQLKVMHEKGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +E+E +I EQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQARTERNERVLITTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N +VI+YAD +TKS+++AI+ET RRRE+Q N++H I PQ++ ++I +VI + E Sbjct: 544 NAEGRVIMYADKMTKSMEIAINETKRRREQQERFNEEHGITPQTINKEIRDVIRATVAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + ++KK+ + ++ + +M AA L+FE AA +RD + LK+ Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMELEMKEAAKALDFERAAELRDLLLELKA 659 >gi|227510643|ref|ZP_03940692.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227524803|ref|ZP_03954852.1| excision endonuclease subunit UvrB [Lactobacillus hilgardii ATCC 8290] gi|227088018|gb|EEI23330.1| excision endonuclease subunit UvrB [Lactobacillus hilgardii ATCC 8290] gi|227190295|gb|EEI70362.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 667 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/668 (52%), Positives = 474/668 (70%), Gaps = 13/668 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 NNH F + + Y P+GDQP AI +L+ G+ +K Q+LLG TG+GKTFT++ VI Sbjct: 6 NNHK-----FDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQ 60 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V++ NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSI Sbjct: 61 VNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI 120 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N++ID++RHSAT SLLERND IVV+SVS I+G+G Y +V L++G ++E+ LL Sbjct: 121 NDEIDQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQ 180 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV QY R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ I Sbjct: 181 LVDIQYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVI 240 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + E I I+ +H++T + A+ I++E+ ++ + EKEG+LLEAQRL+QR TYD+E Sbjct: 241 GDREHIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIE 300 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 M+ G IENYSR++ R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD Sbjct: 301 MMREMGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDK 360 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L +YGFRLPS +DNRPLR E+ I +SATPG +E++Q + +V+QIIRP Sbjct: 361 ARKEQLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKD-VVQQIIRP 419 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP +++R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+V+Y Sbjct: 420 TGLLDPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKY 479 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS++KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SL Sbjct: 480 LHSDIKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSL 539 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRA+RN + VI+YAD++T S++ AIDET RRR Q+++NK+H I P+++ I Sbjct: 540 IQTIGRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTI---IKP 596 Query: 732 VIDPILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 V D I + DA + +++ +S K K L L +M AA L+FE+AA +R Sbjct: 597 VRDAISITKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLR 656 Query: 788 DEIKRLKS 795 D I LK+ Sbjct: 657 DTIMELKA 664 >gi|164686652|ref|ZP_02210680.1| hypothetical protein CLOBAR_00247 [Clostridium bartlettii DSM 16795] gi|164604042|gb|EDQ97507.1| hypothetical protein CLOBAR_00247 [Clostridium bartlettii DSM 16795] Length = 670 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/659 (53%), Positives = 479/659 (72%), Gaps = 7/659 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D+ F++++D+ P+GDQP AI +++ I+ EK LLGVTGSGKTFTMA +I+ +++P Sbjct: 13 DVMDFKIKSDFKPTGDQPEAIREIVNAINHDEKFSTLLGVTGSGKTFTMANIIQEVKKPT 72 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID Sbjct: 73 LILAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 132 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++RHSAT S+LER D I+VSSVSCIYGIG + Y +++ L+ G V++ +++ L++ Q Sbjct: 133 KLRHSATASILEREDTIIVSSVSCIYGIGDPKDYKDLMLSLREGMQVDRDDVIKKLIEIQ 192 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R DI +RGTFRV GD +EIFP ++ A RV FG++I+ I+E +TG+ + + Sbjct: 193 YERNDINFVRGTFRVRGDVVEIFPVSNDERAIRVEFFGDEIDRITEIDYVTGKIVGTRKY 252 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 I+ SHYVT + A+ I++EL + E + +LLEAQR+EQR YD+EML Sbjct: 253 TAIFPASHYVTTPERIEQAIDAIEKELAQVIQEFKDNDQLLEAQRIEQRTKYDIEMLREV 312 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G CQ IENYSR++TGR PGE P TL + P+D LL +DESHVTIPQ+ GMY GD RK + Sbjct: 313 GFCQGIENYSRHITGRKPGEKPYTLMNFFPDDFLLIIDESHVTIPQVRGMYAGDRSRKKS 372 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L + GFRLPS DNRPL FEE+ + VSATPG +E+E + +QIIRPTGL+D Sbjct: 373 LIDNGFRLPSAYDNRPLNFEEFEENINQVLFVSATPGPYEIEHST-TVAQQIIRPTGLLD 431 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +E+R Q++D+ EIN ++ R+L+T LTK+M+EDLT YL E I+V+Y+HS++ Sbjct: 432 PIIEVRPIVNQIDDLVGEINKVVERNERVLVTTLTKKMSEDLTNYLKEVGIKVKYLHSDI 491 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 TLER EIIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS+TSLIQT+G Sbjct: 492 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTVG 551 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN +VI+YAD IT+S+ I+ET RRR+ Q ++N++H I P+++K+ I + I+ + Sbjct: 552 RAARNAEGRVIMYADKITRSMAATIEETARRRQIQSQYNEEHGIIPRTIKKDIRDNIETL 611 Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L E+ IS + +K + K +++ L+ +M AA NL FE AA++RD+IK L+ Sbjct: 612 KLAEEEEIYGIS-----ETDNKDEIKENIEKLQAEMMEAATNLQFERAAQLRDKIKELE 665 >gi|150391818|ref|YP_001321867.1| excinuclease ABC subunit B [Alkaliphilus metalliredigens QYMF] gi|149951680|gb|ABR50208.1| excinuclease ABC, B subunit [Alkaliphilus metalliredigens QYMF] Length = 664 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/659 (54%), Positives = 481/659 (72%), Gaps = 3/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+DY P+GDQP AI L +GI + Q+LLGVTGSGKTFTMA +I+ +Q+P +++A Sbjct: 4 FEIQSDYQPTGDQPKAIEALSQGIKEGLRDQVLLGVTGSGKTFTMANIIQDVQKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVQSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G Y +++V L+ G + ++ ++L LV QY R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGDPAEYKKLVVSLRTGMTKDRDQVLRQLVDIQYLRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD +EIFP+ + A RV FG++I+ I+E LTG+ + I I+ Sbjct: 184 DINFIRGTFRVRGDIVEIFPASSSENAIRVEFFGDEIDRITEINSLTGEIVGLRNHISIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + A++ I++EL ++ ++E +L+EAQR++QR YD+EML G CQ Sbjct: 244 PASHYATSADKIENAIESIEQELIEQVAFFKQEEKLIEAQRIQQRTMYDIEMLREVGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR LTGR G P TL +Y P+D L+ VDESH TIPQ+ GMY GD RK +L + Sbjct: 304 GIENYSRQLTGRKAGSRPFTLIDYFPDDYLIIVDESHATIPQVGGMYAGDRSRKESLINH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ L + VSATPG +ELE+ Q I EQIIRPTGL+DP VE Sbjct: 364 GFRLPSALDNRPLNFKEFEKLVNQILYVSATPGPYELERNQR-IEEQIIRPTGLLDPVVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ EI+ ++ R+L+T LTK+M+EDLT YL E +I+VRY+HS++ T+E Sbjct: 423 VRPIEGQIDNLVGEIHKRIEKKQRVLVTTLTKKMSEDLTNYLKEIDIKVRYLHSDILTME 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS T+LIQT GRAAR Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTTGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VI+YA+ ITKS+Q AIDET RRR Q+E+N KH I P+++ +K+ VI+ + + Sbjct: 543 NVEGRVIMYANRITKSMQKAIDETERRRLIQIEYNDKHQITPKTIVKKVRNVIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799 ++ + +L+ ++ + ++ L+ +M AAD L FE AA +RD++K+LK YF Sbjct: 603 EK-EKYGLNKEIEALTPEEVEELIQRLQIEMMQAADELQFERAAELRDQVKKLKKV-YF 659 >gi|227513658|ref|ZP_03943707.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC 11577] gi|227083174|gb|EEI18486.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC 11577] Length = 667 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/668 (52%), Positives = 474/668 (70%), Gaps = 13/668 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 NNH F + + Y P+GDQP AI +L+ G+ +K Q+LLG TG+GKTFT++ VI Sbjct: 6 NNHK-----FDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQ 60 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V++ NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSI Sbjct: 61 VNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI 120 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N++ID++RHSAT SLLERND IVV+SVS I+G+G Y +V L++G ++E+ LL Sbjct: 121 NDEIDQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQ 180 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV QY R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ I Sbjct: 181 LVDIQYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVI 240 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + E I I+ +H++T + A+ I++E+ ++ + EKEG+LLEAQRL+QR TYD+E Sbjct: 241 GDREHIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIE 300 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 M+ G IENYSR++ R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD Sbjct: 301 MMREMGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDK 360 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L +YGFRLPS +DNRPLR E+ I +SATPG +E++Q + +V+QIIRP Sbjct: 361 DRKEQLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKD-VVQQIIRP 419 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP +++R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+V+Y Sbjct: 420 TGLLDPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKY 479 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS++KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SL Sbjct: 480 LHSDIKTLERAQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSL 539 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRA+RN + VI+YAD++T S++ AIDET RRR Q+++NK+H I P+++ I Sbjct: 540 IQTIGRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTI---IKP 596 Query: 732 VIDPILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 V D I + DA + +++ +S K K L L +M AA L+FE+AA +R Sbjct: 597 VRDAISITKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLR 656 Query: 788 DEIKRLKS 795 D I LK+ Sbjct: 657 DTIMELKA 664 >gi|194468167|ref|ZP_03074153.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23] gi|194453020|gb|EDX41918.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23] Length = 671 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/662 (52%), Positives = 470/662 (70%), Gaps = 11/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL KGI EK Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 10 FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G +E+ LL+ LV Q+ R Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ I + + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+EQ + +QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VTQQIIRPTGLLDPTVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N N VI+YADT+T S+Q A+DET RRR Q+++N++H+I P ++ + I E I Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 D I +++A D L K+ L L +QM AA L+FE+AA +RD I L Sbjct: 609 DEIEADNSAEFT---DKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMEL 665 Query: 794 KS 795 K+ Sbjct: 666 KT 667 >gi|300858355|ref|YP_003783338.1| UvrABC system protein B [Corynebacterium pseudotuberculosis FRC41] gi|300685809|gb|ADK28731.1| UvrABC system protein B [Corynebacterium pseudotuberculosis FRC41] gi|302330624|gb|ADL20818.1| excinuclease ABC subunit B [Corynebacterium pseudotuberculosis 1002] Length = 699 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/662 (54%), Positives = 472/662 (71%), Gaps = 9/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQPAAI +L + E+ +LLG TG+GK+ T A +IE QRP +VMA Sbjct: 28 FHVVSEYKPAGDQPAAIEELDARLDRGERDVVLLGATGTGKSATAAWLIEQQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D +VVSSVSCIYG+G+ +SY V LK+G+ VE+ L LV QY R Sbjct: 148 RATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVMLKVGEEVERDRFLRLLVDIQYDRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RGTFRV GD+++I P++ E+VA RV FG++I+ + +PLTG IR VE ++I+ Sbjct: 208 DIGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEIDALYYIHPLTGDVIRRVEEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGLERMAKAIEGIKEELADRLTDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G P TL +Y P D L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHLDGREAGSAPATLLDYFPADFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR+EE+ T+ +SATPG +EL G VEQ+IRPTGL+DP ++ Sbjct: 387 GFRLPSALDNRPLRWEEFEQRVGQTVYMSATPGDYELAAAGGEYVEQVIRPTGLLDPKID 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI Q+ R+L+T LTK+MAEDLT+YL E N+RVRY+HS++ TL+ Sbjct: 447 VRPTKGQIDDLIHEIRQRTQKQERVLVTTLTKKMAEDLTDYLLENNVRVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 NV+ +VI+YAD +T S+Q AIDET RRREKQ+ +N +H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADRVTDSMQYAIDETERRREKQIAYNTEHGIDPQPLRKKIADILDQVQEAR 626 Query: 739 EDAATTNISIDA-----QQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + A+ S DA + LS + K + + L QM AA L FE A R+RDEI Sbjct: 627 GETASQEASADAAIAEKRDLSAMPADKLEVLISELTAQMGEAARELKFELAGRLRDEIVD 686 Query: 793 LK 794 LK Sbjct: 687 LK 688 >gi|283782003|ref|YP_003372758.1| excinuclease ABC, B subunit [Pirellula staleyi DSM 6068] gi|283440456|gb|ADB18898.1| excinuclease ABC, B subunit [Pirellula staleyi DSM 6068] Length = 691 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/658 (52%), Positives = 479/658 (72%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P+GDQP AI +L++GI + ++ Q+LLGVTGSGKTFTMA VI+ +Q+P +V++ Sbjct: 3 FQLESQFQPAGDQPQAIEKLVQGIRANKRSQVLLGVTGSGKTFTMANVIQQVQKPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R Sbjct: 63 HNKTLAAQLYSEFKEFFPRNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINQEIDRLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 ++T SL+ R D I+++SVSCIYG+GS + Y M+V L++G ++++ E+LS LV QY R Sbjct: 123 ASTSSLVSRQDVIIIASVSCIYGLGSPKDYKAMMVPLRVGQAIDRDEVLSRLVDIQYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EI+PS+ E+ A+R+ ++G+DIE++S P++G+ + + + IY Sbjct: 183 DIAFERGKFRVRGDCVEIWPSY-EEYAFRIELWGDDIEKLSFINPISGETLATQDQLFIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + A++ IK+EL RL EL + G+LLEAQRL R +D+EML+ G C Sbjct: 242 PAKHFVLPEERIAGAIETIKQELDERLNELREHGKLLEAQRLSARTRFDIEMLQEVGHCP 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR PG P TL+++ PED LL +DESHVTIPQ+ MY GD RK TL E+ Sbjct: 302 GIENYSRPLAGRPPGSTPDTLYDFFPEDYLLIIDESHVTIPQVRAMYNGDRARKITLVEH 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEEW + VSATP +EL Q QG +VEQIIRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPMKFEEWEQKIKQVVYVSATPNDYELLQSQGEVVEQIIRPTGLLDPVIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + SAR QV+ + ++I A G R+L+T LTKR+AEDL+ YL ++ + +++HSE+ E Sbjct: 422 VVSARGQVQHLLEQIRERAAVGERVLVTALTKRLAEDLSAYLVQQKVACKWLHSELDAFE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++RDLR GKF+ L+G+NLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RVELLRDLRQGKFEALIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 NVN+KVILYAD IT+S++LA++ET+RRR Q +N +H I P++VK+ I I+ + Sbjct: 542 NVNAKVILYADKITESMRLAMEETSRRRAIQEAYNLEHGITPETVKKHIRAGIESAMAAH 601 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 DA +D +++ + L +M AA+ L FE A +RD I +L+ + Sbjct: 602 RDANAAVGRVDEEEVITEELL-----SELEAEMLEAAEKLEFERAGALRDRITQLRDA 654 >gi|297626691|ref|YP_003688454.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922456|emb|CBL57029.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 694 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/682 (51%), Positives = 476/682 (69%), Gaps = 20/682 (2%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ ++ + F++ D+ PSGDQP AI +L + I + E+ +L+G TG+GKT T+A + E Sbjct: 4 VDTITRTVAPFKVHADFEPSGDQPQAIEELARRIEAGEQDVVLMGATGTGKTATVAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS Sbjct: 64 RLQRPMLVMQPNKTLAAQYATELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+R+SAT SLL R D IVV++VS IYG+G+ + Y ++ LK+G ++ LL Sbjct: 124 LNEEVERLRYSATNSLLTRRDVIVVATVSAIYGLGTPQEYVDQMINLKVGQEWDRSNLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV+ QY R D+ RGTFRV GD++EIFP + E+ A RV FG++IE ++ PLTG+ Sbjct: 184 RLVEVQYVRNDMAATRGTFRVRGDTLEIFPMY-EEFAIRVEFFGDEIEALTTLNPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + + ++ SHY + A+ I+ EL RL ELEK+ +LLEAQRL R YD+ Sbjct: 243 VSEDKQVYVFPASHYTAGPERMARAITDIEAELADRLAELEKDNKLLEAQRLRMRTNYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G+C IENYSR++ GR G PP L +Y PED +L +DESHVT+PQI GMY GD Sbjct: 303 EMMRQIGTCSGIENYSRHIDGRPAGSPPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS MDNRPLRFEE+ T+ SATPG +EL + G+ VEQIIR Sbjct: 363 MSRKRTLVDHGFRLPSAMDNRPLRFEEFTERIGQTVYSSATPGPYELARGNGV-VEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI A++ R+L+T LTK+MAEDLT+YL E +R R Sbjct: 422 PTGLVDPEVIVKPTHGQIDDLMGEIKARAKKDERVLVTTLTKKMAEDLTDYLMEHGVRTR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL+R+E++R+LR+G++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS S Sbjct: 482 YLHSEVDTLKRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDRS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T S+ AIDET RRR+ Q+++NK H ++PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADQMTPSMTKAIDETNRRRQIQVDYNKAHGVDPQPLRKKIA 601 Query: 731 EVIDPILLEDAATTNISID-------AQQLSLSKKKGK-----------AHLKSLRKQMH 772 ++ D ++ EDA T + D A L + K K ++ L QMH Sbjct: 602 DITDMLVREDADTDKLLADTRGSGHEASALPTTSDKHKRGENLPATELAGLIQELTAQMH 661 Query: 773 LAADNLNFEEAARIRDEIKRLK 794 AA L FE AAR+RDEI LK Sbjct: 662 SAAGELQFELAARLRDEIADLK 683 >gi|254520577|ref|ZP_05132633.1| excinuclease ABC subunit B [Clostridium sp. 7_2_43FAA] gi|226914326|gb|EEH99527.1| excinuclease ABC subunit B [Clostridium sp. 7_2_43FAA] Length = 656 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 469/655 (71%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP AI L+ I +K Q LLGVTGSGKT+TMA +IE +Q+P I++A Sbjct: 4 FKIESKFKPTGDQPQAIESLVNSIERGDKGQTLLGVTGSGKTYTMANIIERVQKPTIILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPNNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G E+ E++ L++ QY+R Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRTGMEKERDEIIRKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG+FRV GDS++I P+ + RV FG++IE I EF LTG + + I Sbjct: 184 DIDFARGSFRVRGDSLDIIPASSSNKGIRVEFFGDEIERIREFDVLTGNILGERNHVSIS 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T L A+K I++EL+ RL EL + +LLEAQRL QR YD+EM+ G C Sbjct: 244 PASHFATSPEVLEKAIKSIEDELEDRLRELNSQEKLLEAQRLRQRTNYDIEMIREMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR+PG PP TL +Y P+D L+F+DESHVT+PQ MY GD RK TL EY Sbjct: 304 GIENYSRILDGRDPGTPPQTLLDYFPDDYLMFIDESHVTLPQCRAMYAGDRSRKDTLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+F E+ + VSATP +E++ I EQ+IRPTGL+DP +E Sbjct: 364 GFRLPCAYDNRPLKFPEFEEKMNQVVFVSATPSQYEIDHSTN-IAEQVIRPTGLIDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EI ++G R L+T LTKRMAEDLT+YL + I+ YMHS+++T+E Sbjct: 423 IRPVQGQIDDLYAEIKKTTEKGFRTLITTLTKRMAEDLTKYLKDLGIKTTYMHSDIETIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRDLRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ AI ET RRRE Q+++N++H I PQ++ +++ EVI+ + + Sbjct: 543 NSESKVIMYADNITKSMNKAIKETERRREIQIKYNEEHGITPQTIIKEVREVIEATKVSE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A+++S KK + ++M AA NL FE AA +RD I LKS Sbjct: 603 EKVEYKVEGAKKVSEKDKKKLIKKYT--EEMMEAAKNLQFERAAELRDIINDLKS 655 >gi|308175247|ref|YP_003921952.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens DSM 7] gi|307608111|emb|CBI44482.1| excinuclease ABC (subunit B) [Bacillus amyloliquefaciens DSM 7] gi|328555219|gb|AEB25711.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens TA208] gi|328913580|gb|AEB65176.1| excinuclease ABC (subunit B) [Bacillus amyloliquefaciens LL3] Length = 661 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/656 (54%), Positives = 470/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI K Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+ +E+ ELL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + + + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ RL + + G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +E+E +I EQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPLID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N +VI+YAD IT S+++AI+ET RRRE+Q N+ H I PQ++ ++I +VI E Sbjct: 544 NAEGRVIMYADKITHSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + ++KK+ + ++ + +M AA L+FE AA +RD + LK+ Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKA 659 >gi|302206072|gb|ADL10414.1| Excinuclease ABC subunit B [Corynebacterium pseudotuberculosis C231] gi|308276310|gb|ADO26209.1| excinuclease ABC subunit B [Corynebacterium pseudotuberculosis I19] Length = 699 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/662 (54%), Positives = 472/662 (71%), Gaps = 9/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQPAAI +L + E+ +LLG TG+GK+ T A +IE QRP +VMA Sbjct: 28 FHVVSEYKPAGDQPAAIEELDARLDRGERDVVLLGATGTGKSATAAWLIEQQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D +VVSSVSCIYG+G+ +SY V LK+G+ VE+ L LV QY R Sbjct: 148 RATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVMLKVGEEVERDRFLRLLVDIQYDRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RGTFRV GD+++I P++ E+VA RV FG++I+ + +PLTG IR VE ++I+ Sbjct: 208 DIGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEIDALYYIHPLTGDVIRRVEEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGLERMAKAIEGIKEELADRLTDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G P TL +Y P D L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHLDGREAGSAPATLLDYFPADFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR+EE+ T+ +SATPG +EL G VEQ+IRPTGL+DP ++ Sbjct: 387 GFRLPSALDNRPLRWEEFEQRVGQTVYMSATPGDYELAAAGGEYVEQVIRPTGLLDPKID 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI Q+ R+L+T LTK+MAEDLT+YL E N+RVRY+HS++ TL+ Sbjct: 447 VRPTKGQIDDLIHEIRQRTQKQERVLVTTLTKKMAEDLTDYLLENNVRVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 NV+ +VI+YAD +T S+Q AIDET RRREKQ+ +N +H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADRVTDSMQYAIDETERRREKQIAYNTEHGIDPQPLRKKIADILDQVQEAR 626 Query: 739 EDAATTNISIDA-----QQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + A+ S DA + LS + K + + L QM AA L FE A R+RDEI Sbjct: 627 GETASQEASADAAIAEKRDLSAMPADKLEVLISELTAQMGEAARELKFELAGRLRDEIVD 686 Query: 793 LK 794 LK Sbjct: 687 LK 688 >gi|288870822|ref|ZP_06115431.2| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479] gi|288865783|gb|EFC98081.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479] Length = 683 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/682 (52%), Positives = 476/682 (69%), Gaps = 12/682 (1%) Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182 W+P + K F++ ++Y P+GDQP AI L+KG + Q LLGVTGSGKT Sbjct: 14 WSPRKE-------KAKMEFKLHSEYQPTGDQPQAIEALVKGFQEGNQFQTLLGVTGSGKT 66 Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 FTMA VI+ +Q+P +++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYVP TD Sbjct: 67 FTMANVIQRIQKPTLIIAHNKTLAAQLYSEFKEYFPENAVEYFVSYYDYYQPEAYVPSTD 126 Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 TYIEK+S+IN++ID++RHSAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G Sbjct: 127 TYIEKDSAINDEIDKLRHSATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGME 186 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 ++ E++ L+ QY R D+ RG+FRV GD +EI+P++ A+RV FG+++E I+E Sbjct: 187 KDRDEVIHKLIDIQYTRNDMDFKRGSFRVRGDVLEIYPAYSGGDAYRVEFFGDEVERITE 246 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 LTG+ + I I+ SHYV + + A + I ELK ++ + E +LLEAQR+ Sbjct: 247 IDSLTGEGKAELGHIAIFPASHYVVSKEKMELATQTILAELKEQVAYFKSEDKLLEAQRI 306 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 +R +D+EM+ TG C IENYSR+LTG PGEPP TL +Y P+D L+ VDESH+T+PQ Sbjct: 307 SERTNFDVEMMRETGFCSGIENYSRHLTGSLPGEPPCTLIDYFPDDFLIIVDESHITLPQ 366 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 + GM+ GD RK TL YGFRLPS +DNRPL FEE+ + VSATP +E + Sbjct: 367 VRGMFAGDRSRKTTLVNYGFRLPSALDNRPLNFEEFESKIDQMMFVSATPSVYEANH-EM 425 Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 + VEQIIRPTGL+DP +E+R Q++D+ E+N +IL+T LTKRMAEDLT+Y+ Sbjct: 426 LRVEQIIRPTGLLDPEIEVRPVEGQIDDLVSEVNKEVANKHKILITTLTKRMAEDLTDYM 485 Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 E IRV+Y+HS++ TLER EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKE Sbjct: 486 REIGIRVKYLHSDIDTLERSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKE 545 Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722 GFLRS+TSLIQT+GRAARN VI+YAD+IT S+++AI+ET RRR Q ++N++H I P Sbjct: 546 GFLRSETSLIQTVGRAARNSEGHVIMYADSITDSMRVAIEETNRRRAIQQQYNEEHGITP 605 Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 ++K+ + ++I + + A S + S+ K+ + K L K+MH AA LNFEE Sbjct: 606 TTIKKSVRDLI--AISKAAIEDKKSFEKDPESMDAKELEKLAKELTKKMHQAAAELNFEE 663 Query: 783 AARIRDEIKRLKSSPYFQGLDD 804 AAR+RD + +K Q LD+ Sbjct: 664 AARLRDRMVEVKK--MLQELDE 683 >gi|256829853|ref|YP_003158581.1| excinuclease ABC subunit B [Desulfomicrobium baculatum DSM 4028] gi|256579029|gb|ACU90165.1| excinuclease ABC, B subunit [Desulfomicrobium baculatum DSM 4028] Length = 670 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/668 (52%), Positives = 466/668 (69%), Gaps = 3/668 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ FQ++++Y P GDQPAAI L GI + Q+LLGVTGSGKTFTM VI + RPA+ Sbjct: 1 MSLFQLESEYVPRGDQPAAIDALCSGIRQGVRDQVLLGVTGSGKTFTMGHVIARLDRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 +MAPNK LAAQLY+EFK FP NAVEYFVSYYDYYQPEAY+P +DTYIEK+S+IN+ ID+ Sbjct: 61 IMAPNKTLAAQLYNEFKGLFPRNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSAINDDIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RH+AT +LL R D I+++SVSCIYG+GS E Y++M++ ++ G V + ++ LV QY Sbjct: 121 LRHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKMVIPVECGQHVAMETVIGRLVDVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D + RGTFRV GD +EI P++ + A R+ FG++I+ I E PLTG+ + V+ Sbjct: 181 ERNDYDLHRGTFRVRGDVLEIIPAYEHEQALRLEFFGDEIDGIYETDPLTGEILSRVQKT 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY SHYV+ R L AM I++EL++RL + L+EAQRLEQ+ DLEM+E G Sbjct: 241 VIYPASHYVSDRDNLVRAMADIRDELRLRLQYFQDNNMLVEAQRLEQKTQLDLEMIEELG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYS +L GR G+PP TL +Y P+D LLF+DESH+++ Q+ M++GD RK TL Sbjct: 301 YCNGIENYSLHLDGRRTGQPPSTLIDYFPKDFLLFMDESHISVSQVGAMFKGDRSRKQTL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL FEE+ TT+ VSATP WELE+ QG++VEQIIRPTGLVDP Sbjct: 361 VDYGFRLPSALDNRPLNFEEFLERIGTTVFVSATPAPWELERAQGVVVEQIIRPTGLVDP 420 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+ Q++ + + R+++T LTKRMAEDLTE+L R +R RY+HS++ Sbjct: 421 QIEVVPTAGQMDHLMAQCLARIAVDERVMVTTLTKRMAEDLTEFLQARGVRARYLHSDID 480 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER+ II+ LR G+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS SLIQT GR Sbjct: 481 TLERVAIIQALRAGEFDVLVGINLLREGLDIPEVSLVAMLDADKEGFLRSTRSLIQTFGR 540 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV KV+LYADT+T+S+ A+ ET RRRE+Q +N++H I PQS+++ + + Sbjct: 541 AARNVKGKVLLYADTVTRSMAEAMGETQRRRERQTLYNEEHGITPQSIRKTSENTLYDLH 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 E + + + L ++M AA+ L FEEAARIRD IK L+ Sbjct: 601 REIKEQERAAERTADYDPGPENAAKEVARLSREMRKAAEMLEFEEAARIRDRIKTLEKR- 659 Query: 798 YFQGLDDS 805 GLD S Sbjct: 660 --YGLDGS 665 >gi|21324137|dbj|BAB98762.1| Helicase subunit of the DNA excision repair complex [Corynebacterium glutamicum ATCC 13032] Length = 699 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/673 (53%), Positives = 479/673 (71%), Gaps = 11/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQPAAI +L + + E+ +L+G TG+GK+ T A +IE QRPA+VMA Sbjct: 28 FVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMGATGTGKSATAAWLIEKQQRPALVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ +SY V L +G+ +++ L LV QY+R Sbjct: 148 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RG FRV GD+++I P++ E++A R+ FG++I+ + +PLTG IR V I+I+ Sbjct: 208 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IK EL++RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVADIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE++ R T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 626 Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D A + S DA + S+ K+ + + L QM AA L FE A R+RDEI Sbjct: 627 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARELKFELAGRLRDEIFE 686 Query: 793 LKSSPYFQGLDDS 805 LK +G+ D+ Sbjct: 687 LKKE--LRGIKDA 697 >gi|259047451|ref|ZP_05737852.1| excinuclease ABC subunit B [Granulicatella adiacens ATCC 49175] gi|259035642|gb|EEW36897.1| excinuclease ABC subunit B [Granulicatella adiacens ATCC 49175] Length = 660 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/658 (54%), Positives = 470/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P GDQP AI +L++G++ K Q LLG TG+GKTFT+A VI+ + +P +V+A Sbjct: 4 FKLVAPYTPQGDQPQAIQELVEGLNKGVKEQTLLGATGTGKTFTIANVIKEVNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEKESS+N++ID++RH Sbjct: 64 HNKTLAGQLYGELKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKESSVNDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVS +YG+ + E Y ++ L+ G +E+ ELL LV+ Q++R Sbjct: 124 SATSALLERRDVIVVASVSSMYGLVNPEDYRDHVLSLREGMEIERDELLRRLVEMQFERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EIF + + A+R+ FG++IE I E LTG+ VE + I+ Sbjct: 184 DYDFRRGTFRVRGDVVEIFLAGHDATAFRIEFFGDEIEAIKEVDVLTGEIKATVEHVPIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V ++ A+ IKEEL +RL EL LLEAQRLEQR YD+EML G C Sbjct: 244 PATHFVANEDQISKAVSTIKEELALRLKELRDNNELLEAQRLEQRTNYDIEMLLEMGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG+PP TL ++ PED+L VDESH+T+ QI GMY GD RK L +Y Sbjct: 304 GIENYSRHMDGRKPGQPPYTLLDFFPEDALFVVDESHITMSQIRGMYNGDRARKEQLIKY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ P I +SATPG +EL + EQIIRPTGL+DPPVE Sbjct: 364 GFRLPSALDNRPLRFEEFEAKVPQIIYISATPGPYELAHTPK-VTEQIIRPTGLLDPPVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EINL ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HS++KTLE Sbjct: 423 VRPIKGQIDDLISEINLRVERNERVFITTLTKKMSEDLTDYLEEVGIKVKYLHSDIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ +L+QTIGRAAR Sbjct: 483 RTEIIRNLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERALVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N N +VI+YAD IT S+Q AIDET RRR Q +NK+H I P+++ + I ++I + Sbjct: 543 NANGRVIMYADKITDSMQRAIDETNRRRSVQEAYNKEHGIVPKTIVKNIRDLIAITHEVE 602 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 EDA +T + D +++S +++ L L M AA L+FE+AA +RD I L++ Sbjct: 603 KEDAPST--AKDFKKMSQEQRREAIELLEL--DMRAAAKALDFEKAADLRDVILELRA 656 >gi|310657817|ref|YP_003935538.1| excinulease of nucleotide excision repair [Clostridium sticklandii DSM 519] gi|308824595|emb|CBH20633.1| excinulease of nucleotide excision repair, DNA damage recognition component [Clostridium sticklandii] Length = 654 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/658 (53%), Positives = 478/658 (72%), Gaps = 11/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +++ I S K Q LLGVTGSGKTFTMA +IE Q+P +V+A Sbjct: 3 FKIVSDYKPMGDQPQAIDTMVRSIESGAKHQTLLGVTGSGKTFTMANIIERTQKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK+SSIN++ID++RH Sbjct: 63 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVAHSDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++LER D I+V+SVSCIYG+G Y +M+V L+ G + ++ +++ LV+ QY+R Sbjct: 123 SATAAVLERRDVIIVASVSCIYGLGDPSDYEEMMVSLRPGQNKDRDDVIKELVEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD IEI P + ++ R+ FG++IE ISE +TG+ + + I+ Sbjct: 183 DINFVRGTFRVRGDIIEILPINTDERGIRIEFFGDEIERISEIDYITGEIVGVRNHVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + L A++ I+ EL+ R+ ++ LEAQR+EQR YDLEML+ G+C+ Sbjct: 243 PASHYVTSKEKLAKAIEKIEVELEERIEYFKERDMFLEAQRIEQRTKYDLEMLKEIGTCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR+ GE P TL ++ P+D L+ +DESHV +PQ+ MY GD RK TL +Y Sbjct: 303 GIENYSRHLSGRDEGERPFTLMDFFPDDFLIIIDESHVMLPQLHAMYAGDRSRKGTLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ + + VSATP +E+E EQ+IRPTGLVDP +E Sbjct: 363 GFRLPSAFDNRPLRFEEFEQVANQILYVSATPSKYEMEHSVA-FGEQVIRPTGLVDPEIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EIN ++ R+L+T LTK+M+E+LT+YL E +++VRY+HS+++TLE Sbjct: 422 IRPIKGQIDDLLFEINERVKKKERVLITTLTKKMSENLTQYLKEASVKVRYLHSDIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 482 RIEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD +T S+Q AI ET RRRE Q+ +NK++NI P ++ ++I VI Sbjct: 542 NSNGKVIMYADNMTGSMQRAITETYRRREIQINYNKENNITPTTIFKEIRGVI------- 594 Query: 741 AATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AAT+ + + ++ +++ K + L +M AA+ L FE+AA +RD I+ L+S Sbjct: 595 AATSAAEGEGNYSVRETIDRERVKDEIIKLSTEMVEAAEALEFEKAASLRDRIRELES 652 >gi|325264764|ref|ZP_08131493.1| excinuclease ABC subunit B [Clostridium sp. D5] gi|324030056|gb|EGB91342.1| excinuclease ABC subunit B [Clostridium sp. D5] Length = 662 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/664 (52%), Positives = 479/664 (72%), Gaps = 5/664 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIA L++G + + LLGVTGSGKTFTMA VI+A+ +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIADLVQGFKEGNQFETLLGVTGSGKTFTMANVIQALNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++R Sbjct: 64 HNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y M++ L+ G + ++ E+++ L++ QY R Sbjct: 124 SATMALAERRDVIIVASVSCIYGLGSPMDYQNMVISLRPGMTRDRDEVMAKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +E+ P++ ED A R+ FG+++E I+E LTG+ ++ I I+ Sbjct: 184 EMDFHRGTFRVRGDVLEVIPAYSEDTAIRIEWFGDEVERITEIDILTGEIKDELKHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + + A+ I++EL+ R+ E +++ +LLEAQR+ +R +D+EML+ TG C Sbjct: 244 PASHYVVDKENIARAVTAIEKELEERVKEFKRQDKLLEAQRIAERTNFDIEMLKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+PP TL +Y P+D ++ +DESH TIPQI GMY GD RK+TL ++ Sbjct: 304 GIENYSRHLAGLAPGQPPYTLIDYFPDDFIIMIDESHKTIPQIGGMYSGDQSRKSTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATP +E E+ + + EQ+IRPTGL+DP V Sbjct: 364 GFRLPSAKDNRPLNFQEFESKINQVMFVSATPNVYE-EEHELLRTEQVIRPTGLLDPEVT 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS V TLE Sbjct: 423 VRPVEGQIDDLIGEVNKEIAKKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSGVDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSATSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S++ A++ET RRRE Q+++N++H I PQ++++ + ++I + + Sbjct: 543 NAEGHVIMYADTITDSMRTAMEETQRRREIQMQYNEEHGITPQTIQKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 A + ++ S+S+K+ + + L KQM AA LNFE AA +RD++ LK Sbjct: 601 VAAEEMRMEKDPESMSRKELEKLISDLSKQMKKAAAELNFESAAELRDKLVELKK--VLN 658 Query: 801 GLDD 804 GLDD Sbjct: 659 GLDD 662 >gi|255324628|ref|ZP_05365745.1| excinuclease ABC subunit B [Corynebacterium tuberculostearicum SK141] gi|255298534|gb|EET77834.1| excinuclease ABC subunit B [Corynebacterium tuberculostearicum SK141] Length = 697 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/661 (53%), Positives = 473/661 (71%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQPAAIA+L + ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FQVVSEYEPAGDQPAAIAELDERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V + + + +++ L LV QY+R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIISVDEELDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFR GD+++I P++ E+ A R+ FG+DI+ + +P+TG I V+ ++I+ Sbjct: 208 DVGFTRGTFRAKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEEVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVAAIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ +SATPG +EL G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTFDEFEQRVGQTVYMSATPGDFELTSSDGEYVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ ++Q++D+ DE+ Q R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+ Sbjct: 447 VKPTKSQIDDLIDEVRTRISQQERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + ED Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLRKKIADILDQV-YED 625 Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + D + S++ + +A + L QM AA L FE A R+RDEI L Sbjct: 626 GGDEESNSDPSAVVEKRDISSMATDEVQALIDDLSAQMGAAARELKFELAGRLRDEIADL 685 Query: 794 K 794 K Sbjct: 686 K 686 >gi|317055166|ref|YP_004103633.1| excinuclease ABC subunit B [Ruminococcus albus 7] gi|315447435|gb|ADU20999.1| excinuclease ABC, B subunit [Ruminococcus albus 7] Length = 656 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/655 (54%), Positives = 466/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY SGDQP A+ L+KG+ S K Q LLGVTGSGKTFTMA VIE + RP +V+A Sbjct: 4 FQLVSDYKLSGDQPEAVDALVKGVESGMKEQTLLGVTGSGKTFTMANVIERLNRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYVP TD YIEK+SSIN++ID++RH Sbjct: 64 HNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDVYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++ ER D I+V+SVSCIY +G Y M+V ++ G + EL++ LVK QY+R Sbjct: 124 SATTAITERRDVIIVASVSCIYSLGDPSEYKSMVVSIRKGAEKSRDELIAELVKIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +R FRV GD +EIFP+ D A RV FG++I+ I E LTG+ + + ++ Sbjct: 184 DINFVRNKFRVRGDVVEIFPADSTDKALRVEFFGDEIDRICEVNVLTGEVLSTLNHAAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ R + A+ IKEEL R+ E G L+EAQR++QR YD+EMLE G C Sbjct: 244 PASHYIVGREKMLDAIDEIKEELAERVKCFEDRGMLIEAQRIQQRTNYDMEMLEEIGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L R+ G P TLF+++P+D LL VDESHV++PQ+ GM+ GD RK TL +Y Sbjct: 304 GIENYSRVLARRSKGAVPFTLFDFMPDDFLLMVDESHVSLPQVRGMFAGDRARKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I VSATPG E E+ Q IVEQ+IRPTGL+DP + Sbjct: 364 GFRLPSALDNRPLQFDEFYERINQAIFVSATPGPIEKEKSQQ-IVEQVIRPTGLLDPLIS 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q+ED+ EIN ++G R+L+T LTK+MAEDLT YL +++VRYMH ++ T+E Sbjct: 423 VRPTDGQIEDLLGEINKRVEKGQRVLVTTLTKKMAEDLTAYLKGFDVKVRYMHHDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS++SLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD++T+S++ AI ET RRR Q ++N++H I P+++ + I +VI+ E+ Sbjct: 543 NSEGMVIMYADSVTRSMESAIRETERRRAIQEKYNEEHGIVPKTIVKDIRDVIEISTKEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + Q + LSK + + + L ++M AA L FE AA +RD I LK Sbjct: 603 AEYSA----RQAVKLSKAEQQKLIDKLTREMKEAAKLLEFEHAAFLRDRIAELKG 653 >gi|297583389|ref|YP_003699169.1| excinuclease ABC subunit B [Bacillus selenitireducens MLS10] gi|297141846|gb|ADH98603.1| excinuclease ABC, B subunit [Bacillus selenitireducens MLS10] Length = 665 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/656 (53%), Positives = 472/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ Y P+GDQP AI +L++GI ++ Q LLG TG+GKTFT++ V++ + RP +V+A Sbjct: 9 FQLESKYSPAGDQPKAIEELVRGIEEKKTFQTLLGATGTGKTFTVSNVVKEINRPTLVIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+N VEYFVSYYDYYQPEAY+P++DTYIEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPNNRVEYFVSYYDYYQPEAYIPQSDTYIEKDASINDEIDKLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND ++V+SVSCIYG+GS E Y ++V L+ G ++ +LL LV QY+R Sbjct: 129 SATSALFERNDVLIVASVSCIYGLGSPEEYRDLVVSLRTGMERDRNQLLRQLVDVQYERN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I+E LTG+ + + + I+ Sbjct: 189 DINFTRGTFRVRGDVVEIFPASRDEHCLRVEFFGDEIDRITEVDALTGEILGERDHVAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A+ I+ EL+ RL EL +LLEAQRLEQR YD+EM+ G C Sbjct: 249 PASHFVTREEKLKRAIVNIEAELEERLKELHANDKLLEAQRLEQRTRYDIEMMHEMGYCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D L+ VDESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSRHLTFREPGATPYTLLDYFPDDFLIVVDESHVTLPQVRGMYNGDQARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ + +SATPG +ELE+ + EQIIRPTGL+DP V+ Sbjct: 369 GFRLPSAKDNRPLKFEEFEDHIHQALFISATPGPYELEKNPE-MTEQIIRPTGLLDPTVD 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +EI L A++ R+L+T LTK+M+EDLT+YL E IRV+Y+HS++KTLE Sbjct: 428 VRPIEGQIDDLLEEIRLRAERDERVLVTTLTKKMSEDLTDYLKEVGIRVQYLHSDIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+IIRDLR G FDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQT+GRAAR Sbjct: 488 RIQIIRDLRRGDFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTMGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N N VI+YAD IT+S+ +AI ET RRR Q +N++H I P ++ + I E+I + Sbjct: 548 NSNGHVIMYADKITRSMDVAISETKRRRSIQEAYNEEHGITPMTIVKAIPELIQATRAAD 607 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A Q LSKK+ + ++ + K+M AA L+FE AA +RD + LK+ Sbjct: 608 EEEAFEAFTKAPQEKLSKKEREKVIERMEKEMKEAAKELDFERAAELRDIVLELKA 663 >gi|81428136|ref|YP_395135.1| excinuclease ABC subunit B [Lactobacillus sakei subsp. sakei 23K] gi|90111040|sp|Q38YA4|UVRB_LACSS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|78609777|emb|CAI54823.1| Excinuclease ABC, subunit B [Lactobacillus sakei subsp. sakei 23K] Length = 667 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/661 (54%), Positives = 470/661 (71%), Gaps = 8/661 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F + Y P+GDQPAAI L K + K Q+L+G TG+GKTFTM+ VI+ + +P ++ Sbjct: 8 NLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLI 67 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 ++ NK LA QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++ Sbjct: 68 ISHNKTLAGQLYAEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKL 127 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSAT SLLERND IVV+SVSCI+G+G Y ++ L+ G VE+ +LL LV Q++ Sbjct: 128 RHSATSSLLERNDVIVVASVSCIFGLGDPREYQNHVLSLRPGMEVERNDLLRQLVDIQFE 187 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI RG FRV GD +EIFP+ +D A RV FG++I+ I E LTG+ I + Sbjct: 188 RNDIDFQRGRFRVRGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVIGERSHVA 247 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ +H++T + A++ IK EL RL L+ EG+LLEAQRLEQR YDLEM++ G Sbjct: 248 IFPATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGY 307 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR++ R GEPP TL ++ P+DS++ +DESHVT+PQI GMY GD RK L Sbjct: 308 CSGIENYSRHMEDRQAGEPPYTLLDFFPKDSIMMIDESHVTMPQIRGMYNGDRARKQMLI 367 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS +DNRPL E+ + VSATPG +E EQ I V+QIIRPTGL+DP Sbjct: 368 DYGFRLPSALDNRPLTLPEFEEHVNEIMYVSATPGPYEAEQTD-IQVDQIIRPTGLLDPN 426 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL E I+VRY+HS++KT Sbjct: 427 IEVRPIMGQIDDLVGEINDRIEKNERVFITTLTKKMSEDLTDYLKELGIKVRYLHSDIKT 486 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 487 LERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRA 546 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 +RN + +V+LYAD IT S++ AIDET RRR Q ++N HNI P+++ + I + I + Sbjct: 547 SRNEHGQVLLYADKITDSMRHAIDETKRRRTIQEDYNTAHNITPKTIIKPIRDAISMVQS 606 Query: 739 ----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+ TN ID + ++SK + ++ L +QM LAA L+FE+AA +RD I LK Sbjct: 607 VEHPEEIKMTN-EIDLE--NMSKAEKLEMVERLSEQMRLAAKKLDFEQAATLRDTILELK 663 Query: 795 S 795 S Sbjct: 664 S 664 >gi|169824598|ref|YP_001692209.1| UvrABC system protein B [Finegoldia magna ATCC 29328] gi|303235209|ref|ZP_07321828.1| excinuclease ABC, B subunit [Finegoldia magna BVS033A4] gi|167831403|dbj|BAG08319.1| UvrABC system protein B [Finegoldia magna ATCC 29328] gi|302493696|gb|EFL53483.1| excinuclease ABC, B subunit [Finegoldia magna BVS033A4] Length = 656 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/657 (52%), Positives = 475/657 (72%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L G+ + + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH Sbjct: 63 HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+VSSVSCIYG+G Y +++ L+ G ++ E++ L+ QY R Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS++IFP+ + + R+ FG++I+ I+E LTG+ + + IY Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + + A+ I+EEL+ RL + +LLEAQRLEQR YD+EML+ G C Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRLKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R PG P TL +Y P+D + +DESHVT+PQI GMY GD RK +L +Y Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + I VSATPG +E + +VEQ+IRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLKFSEFESMMNQVIYVSATPGKYEKAKTNE-VVEQVIRPTGLLDPKIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GK+DVLVGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+Y DTIT+S+ +AI ET RRRE Q E+NK+HNI P ++ + + + I + Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQEEYNKEHNITPTTINKSVRKRIQNTFV-- 599 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A N + DA +++ SK + + +++L +M AA+ L+FE AA +RD+I+ LK++ Sbjct: 600 -AEENENYDANKVTEFSKDEIEVIIENLNTEMLKAAEELDFERAATLRDQIRNLKNT 655 >gi|154687631|ref|YP_001422792.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens FZB42] gi|189037951|sp|A7Z985|UVRB_BACA2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|52673266|emb|CAH56506.1| UvrABC system protein B [Bacillus amyloliquefaciens FZB42] gi|154353482|gb|ABS75561.1| UvrB [Bacillus amyloliquefaciens FZB42] Length = 661 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 470/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI K Q L+G TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLMGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+ +E+ ELL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + + + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ RL + + G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + VSATPG +E+E +I EQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPLID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N +VI+YAD IT S+++AI+ET RRRE+Q N+ H I PQ++ ++I +VI E Sbjct: 544 NAEGRVIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + ++KK+ + ++ + +M AA L+FE AA +RD + LK+ Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKA 659 >gi|227545102|ref|ZP_03975151.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A] gi|300909227|ref|ZP_07126688.1| excision endonuclease subunit UvrB [Lactobacillus reuteri SD2112] gi|227184922|gb|EEI64993.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A] gi|300893092|gb|EFK86451.1| excision endonuclease subunit UvrB [Lactobacillus reuteri SD2112] Length = 690 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/659 (52%), Positives = 469/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL KGI EK Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 29 FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 89 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G +E+ LL+ LV Q+ R Sbjct: 149 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I E LTG+ I + + + I+ Sbjct: 209 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEVIGDRDHVSIF 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + EG+LLEA+R++QR TYD+EM+ G Sbjct: 269 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 329 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+EQ + +QIIRPTGL+DP VE Sbjct: 389 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 447 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL + +RV+Y+HS++KTLE Sbjct: 448 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLRVKYLHSDIKTLE 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 508 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 567 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 N N VI+YADT+T S+Q A+DET RRR Q+++N++H+I P ++ + I E I Sbjct: 568 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 627 Query: 739 EDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++A N + D L K+ L L +QM AA L+FE+AA +RD I LK+ Sbjct: 628 DEAEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKT 686 >gi|329928741|ref|ZP_08282590.1| excinuclease ABC, B subunit [Paenibacillus sp. HGF5] gi|328937522|gb|EGG33940.1| excinuclease ABC, B subunit [Paenibacillus sp. HGF5] Length = 663 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 472/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+++ P GDQP AI L++G+ +K Q LLG TG+GKTFT+A+ I + RP +V+A Sbjct: 11 FEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIAKVNRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH Sbjct: 71 HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS Y +M++ L++G + E+LS LV QY+R Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILSRLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ + A RV +FG++IE I+E LTG+ + E I I+ Sbjct: 191 DINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGEREHIAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A+ I+ EL+ RL L EG+LLEAQRLEQR YD+EM++ G C Sbjct: 251 PASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R PG P TL +Y P+D L +DESHVT+PQI MY GD RK L ++ Sbjct: 311 GIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTVLVDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +E+E C +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCD-TMVEQIIRPTGLLDPIID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ + R+L+T LTK+MAEDLT+YL E I+VRYMHS++KTLE Sbjct: 430 VRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLG F VLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+Y D IT S+ AI ET RRR Q+ +N++H I PQ++++K+ +VI+ + + Sbjct: 550 NSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRDVIEATKVAE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + Q+ +SKK+ + ++ L +M AA NL FE AA +RD + L++ Sbjct: 610 GKADYLVGEGQK--MSKKERQKLIQRLEAEMKEAAKNLQFERAAELRDALLELQA 662 >gi|158313885|ref|YP_001506393.1| excinuclease ABC subunit B [Frankia sp. EAN1pec] gi|158109290|gb|ABW11487.1| excinuclease ABC, B subunit [Frankia sp. EAN1pec] Length = 731 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/689 (51%), Positives = 484/689 (70%), Gaps = 30/689 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PSGDQPAAI +L + + + EK +LLG TG+GK+ T A ++E +QRP +VMA Sbjct: 42 FEVVSDFAPSGDQPAAIEELARRVRAGEKDVVLLGATGTGKSATTAWLVEHLQRPTLVMA 101 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH Sbjct: 102 PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 161 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ + Y +V+L++GD +E+ LL V QY R Sbjct: 162 SATMNLLTRRDVVVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDRLLRRFVDVQYARN 221 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++E+FP + E++A R+ MFG++IE ++ +PLTG+ +R + + ++ Sbjct: 222 DLAFTRGTFRVRGDTVEVFPVY-EELAVRIEMFGDEIERLTYLHPLTGEIVRESQEVFVF 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL RL ELE +G+LLEAQRL R TYD+EM+ G C Sbjct: 281 PATHYVAGPERMERAIAGIEAELTDRLAELENQGKLLEAQRLRMRTTYDIEMMRQVGFCS 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y P+D LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 341 GIENYSRHIDGRAAGTAPHTLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDH 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR+EE+ T+ +SATPG +EL + G +VEQIIRPTGL+DP + Sbjct: 401 GFRLPSAIDNRPLRWEEFLERIGQTVYLSATPGPYELGRGDG-VVEQIIRPTGLLDPEIV 459 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + A++ RIL+T LTK+M+EDLT+YL E IRVRY+HSEV TL Sbjct: 460 LKPTKGQIDDLVHEIRIRAERDERILVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 519 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++ +LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 520 RVELLTELRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTIGRAAR 579 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AI+ET RRREKQ+ +N + ++PQ +++K++++++ ++ E Sbjct: 580 NVSGQVHMYADKITPSMSKAIEETNRRREKQIAYNTERGLDPQPLRKKVVDILEDMVRES 639 Query: 741 AATTNISIDAQQLSLSKK-----KGKAH---------------------LKSLRKQMHLA 774 A I + S K K KA ++ L QMH A Sbjct: 640 AGEEMIGGGGRAQSRGKAPVPGMKSKAGDSVGRYAAELAGMPRHELAQLIRQLDDQMHEA 699 Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 A L FE AAR+RDE+ LK +G+D Sbjct: 700 AKELQFELAARLRDEVNELKKE--LRGMD 726 >gi|227500159|ref|ZP_03930228.1| excision endonuclease subunit B [Anaerococcus tetradius ATCC 35098] gi|227217681|gb|EEI82985.1| excision endonuclease subunit B [Anaerococcus tetradius ATCC 35098] Length = 656 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/662 (54%), Positives = 472/662 (71%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q++Y P GDQP AI +L KGI + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FNLQSNYKPRGDQPIAIDKLTKGIEDGKHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID+MRH Sbjct: 63 HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++V L+ + ++++ L+ QY R Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPSQEISPEDVMRKLIDVQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR GD ++IFP+ + A R+ FG++I+EISEF LTG+ + IY Sbjct: 183 DVDFSRGTFRRRGDILDIFPAGFDQKAIRIEFFGDEIDEISEFDALTGKVTAKISHAYIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ I+EEL+ RL EL +E +LLEAQRLEQR YD+EML G C Sbjct: 243 PASHYATSSEKTEKAIVSIEEELEERLFELNRENKLLEAQRLEQRTKYDIEMLREIGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y PED +L VDESHV+IPQ+ GMY GD RK L +Y Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFILMVDESHVSIPQVGGMYEGDRSRKQNLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L I VSATPG +ELE+ G +V+QIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLKFFEFEDLIKQAIYVSATPGPYELEKTHGQMVDQIIRPTGLLDPLIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ +E++ ++ R+L+T LTK+MAEDLT YL E I+VRY+HS++KT+E Sbjct: 423 VRPTKNQIDDLIEEVHKTIEKKERVLVTTLTKKMAEDLTTYLTENGIKVRYLHSDIKTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVLVGINLLREGLDIPE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADTITKS++ AIDET RRR+ Q + NK H I P ++K+ I E+I Sbjct: 543 NSEGRVIMYADTITKSMKKAIDETERRRKIQEDFNKVHGIVPTTIKKNIAEII------- 595 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T + + SK + L ++ +M+ AA+ L+FE AA +RD+IK +K + F Sbjct: 596 -QITKKKEEEEIEEFSKDDIETILINMESEMYKAAEELDFERAAALRDQIKAMKDN--FT 652 Query: 801 GL 802 G+ Sbjct: 653 GV 654 >gi|311740505|ref|ZP_07714332.1| excision endonuclease subunit UvrB [Corynebacterium pseudogenitalium ATCC 33035] gi|311304025|gb|EFQ80101.1| excision endonuclease subunit UvrB [Corynebacterium pseudogenitalium ATCC 33035] Length = 697 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/661 (53%), Positives = 472/661 (71%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQPAAIA+L + ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FQVVSEYEPAGDQPAAIAELNERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V + + + +++ L LV QY+R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIISVDEELDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFR GD+++I P++ E+ A R+ FG+DI+ + +P+TG I V+ ++I+ Sbjct: 208 DVGFTRGTFRAKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEEVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVAAIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ +SATPG +EL G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTFDEFEQRVGQTVYMSATPGDFELTSSDGEYVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DE+ Q R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIDEVRTRISQQERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + ED Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLRKKIADILDQV-YED 625 Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + D + S++ + +A + L QM AA L FE A R+RDEI L Sbjct: 626 GGEEEANSDPSAVVEKRDISSMATDEVQALIDDLSAQMGAAARELKFELAGRLRDEIADL 685 Query: 794 K 794 K Sbjct: 686 K 686 >gi|38233744|ref|NP_939511.1| excinuclease ABC subunit B [Corynebacterium diphtheriae NCTC 13129] gi|81829915|sp|Q6NHI3|UVRB_CORDI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|38200005|emb|CAE49674.1| excinuclease ABC subunit B [Corynebacterium diphtheriae] Length = 681 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/660 (54%), Positives = 471/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAI +L + E+ +LLG TG+GK+ T A +IE QRP +VMA Sbjct: 11 FEVISEYEPAGDQPAAIEELDARLSRGERDVVLLGATGTGKSATAAWLIEQQQRPTLVMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 71 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D +VVSSVSCIYG+G+ +SY V L++ + VE+ L LV QY R Sbjct: 131 RATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLRVDEEVERDRFLRLLVDIQYDRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFRV GD+++I P++ E+VA RV FG+DI+ + +PLTG IR V+ ++I+ Sbjct: 191 DVGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDDIDALYYIHPLTGDVIRQVDEVRIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IK EL+ RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 250 PATHYVAGPERMAKAVEDIKAELRDRLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 310 GIENYSRHLDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ T+ +SATPG +EL G VEQ+IRPTGLVDP ++ Sbjct: 370 GFRLPSALDNRPLKWEEFEQRVGQTVYMSATPGDYELAASGGEYVEQVIRPTGLVDPEID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL+ Sbjct: 430 VRPTRGQIDDLIHEIKQRTTKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD IT S+Q AIDET RRREKQ+ +NK+H I+PQ +++KI ++++ + Sbjct: 550 NVSGTVIMYADKITDSMQYAIDETERRREKQIAYNKEHGIDPQPLRKKIADILEQVQESK 609 Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKS----LRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +T S DA +S + A L+S L QM AA L FE A R+RDEI LK Sbjct: 610 AESTAPSSDAVVVSKTNTSSMPVAELRSLIDDLTTQMGTAARELKFELAGRLRDEIAELK 669 >gi|260589087|ref|ZP_05855000.1| excinuclease ABC subunit B [Blautia hansenii DSM 20583] gi|260540507|gb|EEX21076.1| excinuclease ABC subunit B [Blautia hansenii DSM 20583] Length = 667 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/656 (54%), Positives = 472/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A Sbjct: 9 FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+N++ID++R Sbjct: 69 HNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNDEIDKLRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+VSSVSCIYGIGS + Y MI+ L+ G ++ E++ L+ QY R Sbjct: 129 SATSSLSERKDVIIVSSVSCIYGIGSPDDYQNMIISLRPGMEKDRDEVIRELIDIQYDRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EIFP+ + A RV FG++I+ I+E LTG+ + I I+ Sbjct: 189 EMDFHRGTFRVRGDVLEIFPADYSETAVRVEFFGDEIDRITEVDILTGEIKSALNHIAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P + A I+EELK R+ + E +LLEAQR+ +R +D+EML+ TG C Sbjct: 249 PASHYVVPIEKIRKAAVAIEEELKERVDYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L+G PG+PP TL +Y +D L+ +DESH TIPQI GMY GD RK TL +Y Sbjct: 309 GVENYSRHLSGLKPGQPPYTLIDYFGDDFLIIIDESHKTIPQIRGMYAGDQSRKQTLVDY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E + + EQIIRPTGL+DP VE Sbjct: 369 GFRLPSAKDNRPLNFEEFEDKIDQILFVSATPGEYE-ENHELLRAEQIIRPTGLLDPEVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++ +IL+T LTKRMAEDLTEY+ E IRVRY+HS++ TLE Sbjct: 428 VRPVEGQIDDLISEVNKEIKKKNKILITTLTKRMAEDLTEYMKELGIRVRYLHSDIDTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S+++AIDET RRR Q ++N++H I P+++K+ + ++I + + Sbjct: 548 NADGRVIMYADVITDSMRIAIDETMRRRALQQKYNEEHGITPKTIKKAVRDLIS--ISKA 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T ++ S+S+K+ + +K ++KQM AA +LNFE AA +RD++ LK S Sbjct: 606 VAETEEKLEKDPESMSRKELENLIKKVQKQMQAAAADLNFEMAASLRDKMLELKKS 661 >gi|159029997|emb|CAO90377.1| uvrB [Microcystis aeruginosa PCC 7806] Length = 667 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/667 (54%), Positives = 470/667 (70%), Gaps = 18/667 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ+Q + P+GDQPAAI +L+ + ++ + Q LLG TG+GKTFT+A VIE + RP + Sbjct: 1 MTAFQLQAPFQPTGDQPAAIDKLVDSLQNQHRFQTLLGATGTGKTFTIAAVIEKIGRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID Sbjct: 61 VLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + L +G +Q++LL +LV QY Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAISLTVGQEFDQRQLLRALVSVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FR+ GD +EI P++ ED ++ FG++IE I PLTG+ ++ +E I Sbjct: 181 NRNDLELTRGRFRLKGDILEIVPAY-EDRVIKIDFFGDEIESIRYLDPLTGEVLQKLERI 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A + IK EL RL+ELEK G+LLEAQRL+QR YDLEML+ G Sbjct: 240 SIYPARHFVTPEERLEVACRDIKTELDNRLLELEKAGKLLEAQRLDQRTRYDLEMLQEVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR GEPP L +Y P++ LL VDESHV++PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRLAGEPPECLVDYFPQNWLLVVDESHVSVPQIRGMYNGDQSRKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS DNRPL+ EE+ I VSATPG WELEQ + IVEQIIRPTG++DP Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVNQCIFVSATPGDWELEQSENHIVEQIIRPTGVLDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R QV+D+ EI + R+L+T LTKRMAEDLTEYL ER I+VRY+HSE++ Sbjct: 420 EIFVRPTEGQVDDLLGEIKERVRLNERVLITTLTKRMAEDLTEYLQERGIKVRYLHSEIQ 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +++RIEII+DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGR Sbjct: 480 SIQRIEIIQDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR++ + ILY D +T S+ AI+ET RRR Q E+N+KH I PQ + ++ I Sbjct: 540 AARHIRGQAILYGDNLTDSMINAIEETKRRRAIQEEYNQKHGIIPQPIVKRSSNSI---- 595 Query: 738 LEDAATTNIS--IDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 A +IS +++QQL LS ++ ++ L QM AA NL FE AA+ R Sbjct: 596 ---LAFLDISRRLNSQQLDQVCENIEELSLEQIPELIQQLEAQMKEAAKNLEFEAAAKYR 652 Query: 788 DEIKRLK 794 D IK+L+ Sbjct: 653 DRIKQLR 659 >gi|32475348|ref|NP_868342.1| excinuclease ABC subunit B [Rhodopirellula baltica SH 1] gi|81835216|sp|Q7UFR2|UVRB_RHOBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|32445889|emb|CAD78620.1| excinuclease ABC subunit B [Rhodopirellula baltica SH 1] gi|327537770|gb|EGF24475.1| UvrABC system protein B [Rhodopirellula baltica WH47] Length = 708 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/654 (53%), Positives = 470/654 (71%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + PSGDQPAAIA+L++GI S + Q LLG TG+GKT+TMA VI ++QRPA++++ Sbjct: 11 FDLHQPFPPSGDQPAAIAKLIEGIQSGKTAQTLLGATGTGKTYTMANVIASVQRPALILS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE+IDR+R Sbjct: 71 HNKTLAAQLYGEFKEFFPNNAVHYFVSYYDYYQPEAYIPQRDVYIEKDSSINEEIDRLRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T SL+ R D ++V+SVS IYG+GS + Y Q++V L G+ + LL V QY+R Sbjct: 131 ATTSSLVSRRDVVIVASVSSIYGLGSPDDYRQLVVDLHQGEQTRRDHLLLKFVDLQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GDSIE++PS+ E+ A+R+ M+G++IE+IS P +G+ I+ VE + IY Sbjct: 191 DIQFERGKFRVRGDSIELWPSY-EEFAYRIEMWGDEIEKISLIKPTSGETIKTVEHLYIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + A++ ++EEL +L + +G+LLEAQRL R +DLEML G C Sbjct: 250 PCKHFVMPEDRIQRAIRLLREELTQQLEIFQSQGKLLEAQRLSARTKFDLEMLAEVGHCP 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+G+ PG P TL+++ P+D + FVDESHVT+PQ+ MY GD RK TL E+ Sbjct: 310 GIENYSRPLSGKEPGATPDTLYDFFPKDFITFVDESHVTVPQVRAMYAGDRSRKITLVEH 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPL+F+EW VSATP +ELE+ G +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPCALDNRPLKFDEWEERTGQICFVSATPSDYELERTGGEVVEQIIRPTGLLDPEVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I SAR QV + +++ + A++ R+L+T LTKR+AEDL Y E+ ++ R++HSE+ E Sbjct: 430 IVSARGQVTHLLEQVRIRAERDERVLVTALTKRLAEDLATYFQEQGVKCRWLHSELNAFE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++++++LR G+FD LVG+NLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 490 RVDLLQELRAGQFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N NS+VILYAD +T S+Q+AIDET RRR Q+E+N KH I P++V++ I + ID E Sbjct: 550 NANSRVILYADKVTDSMQMAIDETERRRVIQMEYNAKHGIVPKTVRKSIRKGID---TEA 606 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + AQ + ++ L ++M AA++L FE AAR+RD + +LK Sbjct: 607 ANHKESTRKAQDSGEAIYITIEYVDKLEQEMLAAAEDLEFERAARLRDRVLQLK 660 >gi|153956169|ref|YP_001396934.1| excinuclease ABC subunit B [Clostridium kluyveri DSM 555] gi|219856494|ref|YP_002473616.1| hypothetical protein CKR_3151 [Clostridium kluyveri NBRC 12016] gi|146349027|gb|EDK35563.1| UvrB [Clostridium kluyveri DSM 555] gi|219570218|dbj|BAH08202.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 664 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/649 (53%), Positives = 467/649 (71%), Gaps = 4/649 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI + I +K Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKVHSQFSPTGDQPQAIESISSRIFKGDKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPENCVEYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+G+ E Y ++ + L+ G + E+L LV+ QY+R Sbjct: 124 SATSALLERRDVIVVASVSCIYGLGNPEEYKKLTLSLRQGMIKNRDEVLKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD+++IFP+ + RV FG++I++I EF LTG + + + I+ Sbjct: 184 DLNFIRGTFRVKGDTVDIFPASSAERGIRVEFFGDEIDKIREFDVLTGSTLGIRKHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T R L ++ I+ EL+ L +L E +LLEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSREKLEISIGKIEAELEETLKKLIAEDKLLEAQRLKQRTNFDIEMMREIGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR+ G PP TL +Y P+D LLF+DESHVT+PQ+ MY GD RK +L EY Sbjct: 304 GIENYSRILDGRSKGSPPQTLIDYFPKDFLLFIDESHVTLPQVKAMYAGDRSRKESLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+E+ + VSATP +EL + I EQI+RPTGL+DP + Sbjct: 364 GFRLPSAFDNRPLKFQEFEKKLNQVVFVSATPAEYELNNSEN-IAEQILRPTGLLDPEIL 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y+ I +G R+L+T LTK+MAEDLTEY + +++ RY+HS + T++ Sbjct: 423 VKPIKGQIDDLYNNIQETIHRGYRVLVTTLTKKMAEDLTEYFKDMDVKTRYLHSSITTID 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLR G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSEKSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N SKVI+YADTIT S+ AI ET RRR+ Q+E+NKK+ I P+++ + I E+I+ ++LE Sbjct: 543 NSESKVIMYADTITNSMDKAISETKRRRQIQIEYNKKNGIKPRTINKAIREIIESTMILE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + T N +A + KK + +K KQM AA L FEEAA++RD Sbjct: 603 EEETYNTLEEA--VKADHKKVEELIKEYEKQMAAAAKELRFEEAAKLRD 649 >gi|19552585|ref|NP_600587.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032] gi|62390254|ref|YP_225656.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032] gi|41325591|emb|CAF21380.1| EXCINUCLEASE ABC SUBUNIT B [Corynebacterium glutamicum ATCC 13032] Length = 720 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/673 (53%), Positives = 479/673 (71%), Gaps = 11/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQPAAI +L + + E+ +L+G TG+GK+ T A +IE QRPA+VMA Sbjct: 49 FVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMGATGTGKSATAAWLIEKQQRPALVMA 108 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 109 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 168 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ +SY V L +G+ +++ L LV QY+R Sbjct: 169 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 228 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RG FRV GD+++I P++ E++A R+ FG++I+ + +PLTG IR V I+I+ Sbjct: 229 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 287 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IK EL++RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 288 PATHYVAGPERMEKAVADIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 347 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 348 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 407 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE++ R T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 408 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 467 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL+ Sbjct: 468 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 527 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 528 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 587 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + Sbjct: 588 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 647 Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D A + S DA + S+ K+ + + L QM AA L FE A R+RDEI Sbjct: 648 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARELKFELAGRLRDEIFE 707 Query: 793 LKSSPYFQGLDDS 805 LK +G+ D+ Sbjct: 708 LKKE--LRGIKDA 718 >gi|227833193|ref|YP_002834900.1| excinuclease ABC, subunit B [Corynebacterium aurimucosum ATCC 700975] gi|262184179|ref|ZP_06043600.1| excinuclease ABC subunit B [Corynebacterium aurimucosum ATCC 700975] gi|227454209|gb|ACP32962.1| excinuclease ABC, subunit B [Corynebacterium aurimucosum ATCC 700975] Length = 697 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/660 (53%), Positives = 475/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P+GDQPAAIA+L + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FRVESEFQPAGDQPAAIAELDERLSRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V L+ G+ +++ L LV QY+R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLEEGEEIDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFRV GD+++I P++ E+ A R+ FG+D++E+ +PLTG + V+ ++I+ Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDVDELYYIHPLTGDVLERVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IKEEL RL ELE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMARAIEDIKEELAERLAELENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMARKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDFEMTASGGEFVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DE+ + R+L+T LTKRMAEDLT+YL E I+VRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIDEVRARTAKQERVLVTTLTKRMAEDLTDYLLEHGIKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLRKKIADILDQVYENA 626 Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +DA T I S++ + +A + L QM AA L FE A R+RDEI LK Sbjct: 627 DEQGQDADPTAIVDKPDVSSMAADEVQALIDDLTTQMREAARELKFELAGRLRDEIADLK 686 >gi|261409601|ref|YP_003245842.1| excinuclease ABC subunit B [Paenibacillus sp. Y412MC10] gi|261286064|gb|ACX68035.1| excinuclease ABC, B subunit [Paenibacillus sp. Y412MC10] Length = 663 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/654 (54%), Positives = 471/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+++ P GDQP AI L++G+ +K Q LLG TG+GKTFT+A+ I + RP +V+A Sbjct: 11 FEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIAKVNRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH Sbjct: 71 HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS Y +M++ L++G + E+LS LV QY+R Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILSRLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ + A RV +FG++IE I+E LTG+ + E I I+ Sbjct: 191 DINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGEREHIAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A+ I+ EL+ RL L EG+LLEAQRLEQR YD+EM++ G C Sbjct: 251 PASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R PG P TL +Y P+D L +DESHVT+PQI MY GD RK L ++ Sbjct: 311 GIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTVLVDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +E+E C +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCD-TMVEQIIRPTGLLDPIID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ + R+L+T LTK+MAEDLT+YL E I+VRYMHS++KTLE Sbjct: 430 VRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLG F VLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+Y D IT S+ AI ET RRR Q+ +N++H I PQ++++K+ +VI+ + + Sbjct: 550 NSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRDVIEATKVAE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + Q+ +SKK+ + ++ L +M AA NL FE AA +RD + L+ Sbjct: 610 GKADYLVGEGQK--MSKKERQKLIQRLEAEMKEAAKNLQFERAAELRDALLELQ 661 >gi|317121057|ref|YP_004101060.1| excinuclease ABC subunit B [Thermaerobacter marianensis DSM 12885] gi|315591037|gb|ADU50333.1| Excinuclease ABC subunit B [Thermaerobacter marianensis DSM 12885] Length = 693 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/656 (55%), Positives = 478/656 (72%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AIA++ + +V LLG TG+GKT TMA VIE +Q P +V+A Sbjct: 4 FKVVSEFEPRGDQPKAIAEITRAFREGARVVTLLGATGTGKTATMAWVIEQLQLPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL +EFK FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH Sbjct: 64 HNKTLAGQLAAEFKQFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDALINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D IVV+SVSCIYG+G+ E Y +++ L++G+ + ++++L LV QY R Sbjct: 124 SATSSLFERKDVIVVASVSCIYGLGAPEDYRDLVLSLRVGNEMPREQILRKLVDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD IEIFP+ + + A RV +FG++I+ ++E LTG+ + + + IY Sbjct: 184 DVDFQRGTFRVRGDVIEIFPASMAERAIRVELFGDEIDRLTEIDALTGEVLAYRDHVAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A++ I+ EL+ RL EL + +LLEAQRLEQR YDLEML G C Sbjct: 244 PASHYVTHEWKLKRAIESIERELEERLAELRAQDKLLEAQRLEQRTRYDLEMLREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PGEPP TL +Y P L +DESHVTIPQ+ MY G+ RK +L +Y Sbjct: 304 GIENYSRHLTGRAPGEPPYTLLDYFPRPFLCIIDESHVTIPQLRAMYEGEMSRKDSLIDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+E+ + VSATPG +E E +IVEQI+RPTGL+DP +E Sbjct: 364 GFRLPSARDNRPLKFDEFWEKVGQVLFVSATPGPFERE-VSDVIVEQIVRPTGLLDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q+ED+ EI ++G R+L+T LTKRMAEDLT+YL E I+VRY+HSE+ TLE Sbjct: 423 VRPTRGQIEDLLGEIRQRVERGHRVLVTTLTKRMAEDLTDYLREMGIKVRYLHSEIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEG+LRS T+LIQTIGRAAR Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSATALIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KVI+YADTIT S++ AI+ET RRR+ Q ++N++H I PQ+V++ + +VI+ + Sbjct: 543 NVEGKVIMYADTITDSMRQAIEETYRRRKIQEDYNRRHGITPQTVRKAVRDVIEATHAAE 602 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ ++LS L + + +K LRK+M AA +L FE AA +RD I L++ Sbjct: 603 RPPEYLA--GKRLSELPRHQIPDLVKRLRKEMEQAARDLEFERAALLRDMILELEA 656 >gi|256750636|ref|ZP_05491522.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750476|gb|EEU63494.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 623 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/625 (56%), Positives = 459/625 (73%), Gaps = 15/625 (2%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 +TGSGKTFTMA +I+ + RP +V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPE Sbjct: 1 MTGSGKTFTMANIIQKLNRPTLVIAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPE 60 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 AY+P+TDTYIEK++SINE+ID++RHSAT +L ER D I+V+SVSCIYG+G Y +++ Sbjct: 61 AYIPQTDTYIEKDASINEEIDKLRHSATAALFERRDVIIVASVSCIYGLGDPVDYENLML 120 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 L+ G ++ E++ LV QY+R D+ RG FRV GD IEIFP+ + A RV +FG+ Sbjct: 121 SLRPGMIKDRDEIIKKLVDIQYERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGD 180 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ I+E LTG+ + + + I+ SHY T + L A+K I+EEL+ R EL+ G+ Sbjct: 181 EIDRIAEIDVLTGEVLGLRKHVAIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGK 240 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 ++EA+RL QR YDLEML+ G CQ IENYSR+++GR PG PP TL +Y P+D L+F+DE Sbjct: 241 IVEAERLRQRTNYDLEMLQEMGYCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDE 300 Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 SHVTIPQI GMY GD RK L EYGFRLPS DNRPL FEE+ I VSATPG + Sbjct: 301 SHVTIPQIRGMYNGDRSRKEALVEYGFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPY 360 Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 ELE + +VEQ+IRPTGL+DP V ++ + QV+D+ EI +G R+L+T LTK+MA Sbjct: 361 ELEHSEQ-VVEQLIRPTGLIDPEVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMA 419 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDLT+YL + I+V+Y+HS+++T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE LVA Sbjct: 420 EDLTDYLKDMGIKVKYLHSDIETIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVA 479 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDADKEGFLRS+TSLIQTIGRAARN +VI+YADT+T S++ AIDET RRR+ Q+E+N Sbjct: 480 ILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYN 539 Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG------KAHLKSLRK 769 KKH I P++V + + +VI+ T+++ + Q+ K K K+ ++ L K Sbjct: 540 KKHGITPKTVIKGVRDVIE--------ATHVAEEEQKYRRKKVKTYDPEIIKSTIEQLEK 591 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 +M AA L FE+AA++RD I LK Sbjct: 592 EMKEAAIELQFEKAAKLRDVIFELK 616 >gi|327441317|dbj|BAK17682.1| helicase subunit of the DNA excision repair complex [Solibacillus silvestris StLB046] Length = 660 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 472/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y P+GDQP AI QL++G+ ++ Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FTIKSAYQPAGDQPEAIKQLIQGVKEGKRHQTLLGATGTGKTFTISNVIKEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDY+QPEAYVP+TDTYIEK+SSINE+ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYFQPEAYVPQTDTYIEKDSSINEEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+G+ E Y +M+V ++ G +E+ +LL LV QY+R Sbjct: 125 SATTALFERKDVIIIASVSCIYGLGNPEEYREMVVSIRTGMEIERNQLLRKLVDIQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ R+ FG++++ I E LTG+ + + + + I+ Sbjct: 185 DINFTRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEVDRIREVDALTGEILGDRQHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL L E RLLEAQRLEQR YDLEM++ G C Sbjct: 245 PASHFVTREEKMKIAIENIEKELEERLTTLRSEDRLLEAQRLEQRTNYDLEMMKEMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED LL VDESHVT+PQ+ GMY GD RK L E+ Sbjct: 305 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSALDNRPLMFDEFQSKVSQAIYVSATPGPYELEHTPE-MVEQIIRPTGLLDPTID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ DEI+ ++ R L+T LTK+M+EDL+ YL E ++V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLIDEIHERIRRNERTLVTTLTKKMSEDLSSYLKEMGLKVEYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LR G +DVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YA+ +T S+ AI ET RRRE Q+ +N++H I P+++ +KI ++I + Sbjct: 544 NSNGHVIMYANNMTDSMTKAISETKRRRETQMAYNEEHGITPKTIIKKIPDIIRATQAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T I+ L+KK+ + + +L+ +M AA L+FE AA +RD I LK+ Sbjct: 604 QEETYITKVTGGKKLTKKELEKLVATLQVEMKEAAKALDFERAAELRDMIFELKA 658 >gi|304386222|ref|ZP_07368555.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM 20284] gi|304327579|gb|EFL94806.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM 20284] Length = 673 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/656 (53%), Positives = 463/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ GI EK Q+LLG TG+GKTFT++ VI+ + +P ++++ Sbjct: 16 FELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILS 75 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID +RH Sbjct: 76 HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELRH 135 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + L++G +++ +LL LV QY+R Sbjct: 136 SATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRELVDIQYERN 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ E + RV FG++I+ + E LTG+ I + + I I+ Sbjct: 196 DIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEIIGDRDHITIF 255 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A++ I+ ELK RL ELE +G+LLEAQRL+QR TYD+EML G Sbjct: 256 PATHFMTNEDRMEHAIEGIEAELKDRLAELEGQGKLLEAQRLKQRTTYDIEMLREMGYTN 315 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 316 GIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQLIDY 375 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + +SATPG +E + +V+QIIRPTGL+DP +E Sbjct: 376 GFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETARTDH-VVQQIIRPTGLLDPTIE 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+YL + I+V Y+HS+VKTLE Sbjct: 435 VRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDVKTLE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRDLRLGK+DVLVGINLLREG+D+PE LVAILDADKEGFLR+ S+IQ GRAAR Sbjct: 495 RTRIIRDLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAGRAAR 554 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 N + VI+YAD +T+S++ IDET RRR Q +NK+H I P ++K+ I +I E Sbjct: 555 NEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSLISATTETE 614 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + +D + +K K ++SL QM AA L+FE AA +RD + LK+ Sbjct: 615 DTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVLELKA 670 >gi|156743469|ref|YP_001433598.1| excinuclease ABC subunit B [Roseiflexus castenholzii DSM 13941] gi|156234797|gb|ABU59580.1| excinuclease ABC, B subunit [Roseiflexus castenholzii DSM 13941] Length = 670 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 470/658 (71%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AIAQL++GI + K Q LLG TG+GKT TMA V ++RPA+VMA Sbjct: 3 FRIEAPFQPAGDQPKAIAQLVEGIRAGYKHQTLLGATGTGKTLTMAHVFSQLERPALVMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L +QLY+EF+ P AVE F+SYYD Y PEAYVP D YIEKE+ INE+IDR+RH Sbjct: 63 HNKTLVSQLYAEFRELLPDAAVEMFISYYDMYTPEAYVPSKDLYIEKEAEINEEIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++L R D ++V+SVS IYG+GS Y Q+++ +++G+ + +LL L+ Q++R Sbjct: 123 AATQALFTRRDVLIVASVSAIYGLGSPHEYGQVVIPIRVGEVRNRDKLLRQLLDLQFERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+++IFP++ +++A RV +G+D+E I+EF PLTG+ + + IY Sbjct: 183 DMDFHRGTFRVRGDTLDIFPAN-QEIALRVEFWGDDVERITEFDPLTGEVLIERTAVNIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T TL A+ I+ EL +RL ELE++G+LLEA RL+QR YDLEML G C Sbjct: 242 PAKHFITTAETLKLAITDIQAELAVRLAELEQQGKLLEAARLKQRTNYDLEMLSEVGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG+ P TL +Y P+D +LF+DESH+T+PQI GMY GD RK TL +Y Sbjct: 302 GIENYSRHLDRRAPGQTPWTLLDYFPDDFILFIDESHITLPQIRGMYAGDRSRKETLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ I VSATPG +E E Q I VEQIIRPTGL+DP VE Sbjct: 362 GFRLPSALDNRPLRFDEFERHIHQVIYVSATPGPYEYEHSQQI-VEQIIRPTGLLDPTVE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI Q+G R L+T LTKRMAEDL +YL E IR Y+HS+++TLE Sbjct: 421 VRPTRGQIDDLVGEIKRRVQKGQRALVTTLTKRMAEDLADYLKEMGIRTSYLHSDIETLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS +SLIQ IGRAAR Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSGSSLIQIIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 ++ VI+YADTIT S++ AIDET RRR Q +N++HNI P + + + ++ D + + Sbjct: 541 HIEGAVIMYADTITPSMKFAIDETNRRRAIQEAYNREHNITPVGISKAVRDLTDRVRKVA 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E+ ++ ++L + K + +K L KQM AA L FE+AA +RD+I L+ + Sbjct: 601 EERGVYQAAVPGEELPIPKDEIVKLIKELEKQMKQAAKELAFEKAAALRDQIIELRRT 658 >gi|239624093|ref|ZP_04667124.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522124|gb|EEQ61990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 660 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/656 (53%), Positives = 469/656 (71%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L+KG + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEYQPTGDQPQAIEALVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 123 SATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIRDRDEIIHKLIDIQYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+FP++ + A+R+ FG++++ I+E LTG+ + I I+ Sbjct: 183 DMDFKRGTFRVRGDVLEVFPAYSDSAAYRIEFFGDEVDRITEIDTLTGEIKAQLGHIAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A + I ELK ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVVPKEKMMEATENILAELKEQVAFFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD RK+TL +Y Sbjct: 303 GIENYSRHLTGGLPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKSTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E E + + VEQIIRPTGL+DP V Sbjct: 363 GFRLPSALDNRPLNFSEFEDKINQMMFVSATPSVYEREH-ELMRVEQIIRPTGLLDPEVT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N +IL+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLISEVNKEVANHHKILITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+++AI ET RRR+ Q +N++H I P ++K+ + ++I + + Sbjct: 542 NSEGHVIMYADNMTDSMRVAIGETNRRRQIQQAYNEEHGITPTTIKKAVRDLI--AISKA 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793 A + S+ +K+ +K L K+M AA LNFEEAAR+RD EIK++ Sbjct: 600 VADNDEKFKKDPESMDEKELNKLVKELEKKMRQAAVELNFEEAARLRDRMIEIKKI 655 >gi|256848093|ref|ZP_05553537.1| excinuclease ABC, B subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715153|gb|EEU30130.1| excinuclease ABC, B subunit [Lactobacillus coleohominis 101-4-CHN] Length = 679 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/659 (52%), Positives = 470/659 (71%), Gaps = 4/659 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY P+GDQP AIAQL KGI +K Q+LLG TG+GKTFT++ VI + +P +++ Sbjct: 9 MFDLVSDYQPTGDQPEAIAQLTKGIKDGDKAQILLGATGTGKTFTISNVIANVNKPTLIL 68 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R Sbjct: 69 SHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLR 128 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSAT SLLERND IVV+SVS I+G+GS Y ++ L++G + + LL LV Q+ R Sbjct: 129 HSATSSLLERNDVIVVASVSSIFGLGSPAEYQNHVISLRVGQEISRDRLLRELVNIQFDR 188 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI RG FRV GD +EIFP+ E+ A RV FG++I+ I E LTG+ + + E + I Sbjct: 189 NDIDFQRGRFRVRGDVVEIFPASREEKALRVEFFGDEIDRIREVDALTGEVLGDREHVSI 248 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +H++T T+ A+ I+ ++K ++ + KEG+LLEA+R++QR TYD+EM+ G Sbjct: 249 FPATHFLTTEETMKVALPEIEADMKKQVEQFTKEGKLLEAERIQQRTTYDIEMMREMGYT 308 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L + Sbjct: 309 NGIENYSRYMDRRKPGEPPFTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKKQLID 368 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL+ +E+ I +SATPG +E Q +V+QIIRPTGL+DP + Sbjct: 369 YGFRLPSALDNRPLKLDEFEQHVNQVIYMSATPGPYEQAQTDH-VVQQIIRPTGLLDPTI 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN ++ R+L+T LTK+M+EDL++YL + ++V+Y+HS++KTL Sbjct: 428 EVRPVMGQIDDLVGEINKRIEKHERVLITTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTL 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +IIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 488 ERTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + VI+YADTIT S++ AIDET RRR Q ++N++H I P+++ + I E I + Sbjct: 548 RNEHGAVIMYADTITDSMKAAIDETKRRRTIQEKYNQEHGITPKTIIKPIQEAISAVKPA 607 Query: 740 DAATTNISID--AQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + S + AQ + LS K+ + L L +QM AA L+FE+AA +RD + L + Sbjct: 608 EDQDDQQSAEFTAQDFAKLSAKEQQQMLDELTEQMRSAAKRLDFEQAATLRDTVMELSA 666 >gi|133930529|gb|ABO43835.1| excinuclease ABC, B subunit [Lactobacillus reuteri] Length = 671 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/659 (52%), Positives = 468/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL KGI EK Q+LLG TG+GKTFT++ VI + +P +++ Sbjct: 10 FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTWILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G +E+ LL+ LV Q+ R Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I E LTG+ I + + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+EQ + +QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL + +RV+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLRVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 N N VI+YADT+T S+Q A+DET RRR Q+++N++H+I P ++ + I E I Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608 Query: 739 EDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++A N + D L K+ L L +QM AA L+FE+AA +RD I LK+ Sbjct: 609 DEAEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKT 667 >gi|229020376|ref|ZP_04177132.1| UvrABC system protein B [Bacillus cereus AH1273] gi|229026605|ref|ZP_04182948.1| UvrABC system protein B [Bacillus cereus AH1272] gi|228734690|gb|EEL85341.1| UvrABC system protein B [Bacillus cereus AH1272] gi|228740911|gb|EEL91153.1| UvrABC system protein B [Bacillus cereus AH1273] Length = 658 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ G+I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQAPGVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|296451821|ref|ZP_06893540.1| excision endonuclease subunit UvrB [Clostridium difficile NAP08] gi|296879783|ref|ZP_06903757.1| excision endonuclease subunit UvrB [Clostridium difficile NAP07] gi|296259300|gb|EFH06176.1| excision endonuclease subunit UvrB [Clostridium difficile NAP08] gi|296429254|gb|EFH15127.1| excision endonuclease subunit UvrB [Clostridium difficile NAP07] Length = 668 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/659 (52%), Positives = 482/659 (73%), Gaps = 7/659 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D F++++D+ P+GDQP AI ++ I+ EK LLGVTGSGKTFTMA +I+ +++P Sbjct: 11 DTMDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPT 70 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 ++MA NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID Sbjct: 71 LIMAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 130 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++RHSAT S+LER D I++SSVSCIYG+G + Y ++++ ++ G ++ +++ L++ Q Sbjct: 131 KLRHSATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQ 190 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R DI RGTFRV GD +EIFP+ ++ A R+ FG++++ I+E +TG+ + Sbjct: 191 YERNDINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNH 250 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + I+ SHYVT + A+ I++EL+ ++ ++ RLLEAQR+EQR YD+EML+ Sbjct: 251 VVIFPASHYVTTPERIEKAIIEIEDELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEI 310 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G CQ IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD RK + Sbjct: 311 GFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTS 370 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L E GFRLPS +DNRPL F+E+ + VSATPG +E++ + I EQIIRPTGL+D Sbjct: 371 LIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLD 429 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P VE+R Q++D+ EI ++ R+L+T LTK+M+EDLT YL E I+V+Y+HS++ Sbjct: 430 PIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDI 489 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 TLER EIIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS+T+LIQTIG Sbjct: 490 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIG 549 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN N +VI+YAD IT S+Q AIDET RRR+ Q +N++HNI P+++++ I + I+ Sbjct: 550 RAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNITPKTIQKNIRDSIEAT 609 Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + E+ IS D K + +A++ L+ +M AA NL FE AA +RD++K+L+ Sbjct: 610 KVAEEEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 663 >gi|184154829|ref|YP_001843169.1| excinuclease ABC subunit B [Lactobacillus fermentum IFO 3956] gi|183226173|dbj|BAG26689.1| excinuclease ABC subunit B [Lactobacillus fermentum IFO 3956] Length = 671 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 469/658 (71%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AIA L KG+ + Q+LLG TG+GKTFT++ VI+ + RP ++++ Sbjct: 10 FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ERND IVV+SVS I+G+GS Y +V L++G + + LL LV+ Q+ R Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ E+ A RV FG++I+ I E LTG+ I + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + KEG+LLEAQRL+QR TYD+EM+ G Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +E+ I +SATPG +E Q +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+L+T LTK+M+EDL++YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 N N VI+YADT+T S++ AIDET RRR Q +NK+H I P+++ + I E I + + Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIVKPIQEAITAVKPVE 608 Query: 739 EDAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A ++ + K+ +A + L +QM AA L+FE+AA +RD + L S Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQIIAELTEQMKAAAKRLDFEQAATLRDTVMELTS 666 >gi|227514395|ref|ZP_03944444.1| excision endonuclease subunit UvrB [Lactobacillus fermentum ATCC 14931] gi|227087261|gb|EEI22573.1| excision endonuclease subunit UvrB [Lactobacillus fermentum ATCC 14931] Length = 671 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 469/658 (71%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AIA L KG+ + Q+LLG TG+GKTFT++ VI+ + RP ++++ Sbjct: 10 FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ERND IVV+SVS I+G+GS Y +V L++G + + LL LV+ Q+ R Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ E+ A RV FG++I+ I E LTG+ I + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + KEG+LLEAQRL+QR TYD+EM+ G Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +E+ I +SATPG +E Q +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+L+T LTK+M+EDL++YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 N N VI+YADT+T S++ AIDET RRR Q +NK+H I P+++ + I E I + + Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIVKPIQEAIKAVKPVE 608 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A ++ + K+ +A + L +QM AA L+FE+AA +RD + L S Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMELTS 666 >gi|148543619|ref|YP_001270989.1| excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016] gi|227363418|ref|ZP_03847542.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM2-3] gi|325681973|ref|ZP_08161491.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM4-1A] gi|148530653|gb|ABQ82652.1| Excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016] gi|227071518|gb|EEI09817.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM2-3] gi|324978617|gb|EGC15566.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM4-1A] Length = 690 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/662 (52%), Positives = 469/662 (70%), Gaps = 11/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL KGI EK Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 29 FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 89 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G +E+ LL+ LV Q+ R Sbjct: 149 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ I + + + I+ Sbjct: 209 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + EG+LLEA+R++QR TYD+EM+ G Sbjct: 269 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 329 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+EQ + +QIIRPTGL+DP VE Sbjct: 389 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 447 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL + ++V+Y+HS++KTLE Sbjct: 448 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 508 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 567 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N N VI+YADT+T S+Q A+DET RRR Q+++N++H+I P ++ + I E I Sbjct: 568 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 627 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 D +++A D L K+ L L +QM AA L+FE+AA +RD I L Sbjct: 628 DETEADNSAEFT---DKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMEL 684 Query: 794 KS 795 K+ Sbjct: 685 KT 686 >gi|184153027|ref|YP_001841368.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112] gi|183224371|dbj|BAG24888.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112] Length = 671 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/662 (52%), Positives = 469/662 (70%), Gaps = 11/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL KGI EK Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 10 FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G +E+ LL+ LV Q+ R Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ I + + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+EQ + +QIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N N VI+YADT+T S+Q A+DET RRR Q+++N++H+I P ++ + I E I Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 D +++A D L K+ L L +QM AA L+FE+AA +RD I L Sbjct: 609 DETEADNSAEFT---DKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMEL 665 Query: 794 KS 795 K+ Sbjct: 666 KT 667 >gi|253681688|ref|ZP_04862485.1| excinuclease ABC subunit B [Clostridium botulinum D str. 1873] gi|253561400|gb|EES90852.1| excinuclease ABC subunit B [Clostridium botulinum D str. 1873] Length = 656 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/654 (54%), Positives = 472/654 (72%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI + KGI EK Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKIHSVYKPTGDQPKAIKSISKGILKGEKFQTLLGVTGSGKTFTMANIIEQVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLTSEFREFFPKNCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+G+ E Y ++ V L+ G ++ E++ LV QY+R Sbjct: 124 SATSALLERKDVIVVASVSCIYGLGNPEEYKKLTVSLREGMQKDRDEIMRQLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFR GD ++IFP+ +V RV FG++I++I EF LTG + + I+ Sbjct: 184 EINFVRGTFRAKGDVLDIFPAAATNVGIRVEFFGDEIDKIREFDVLTGNILNTRKHALIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL E +LLEAQR++QR +D+EM+ G C Sbjct: 244 PASHFATSKEKLEIAIKKIEEELEERVRELTAEDKLLEAQRVKQRTNFDIEMMREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y PED LLF+DESHVT+PQI MY GD RK L +Y Sbjct: 304 GIENYSRILDGRRAGTPPKTLIDYFPEDFLLFIDESHVTLPQIKAMYGGDKSRKDNLVQY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ TI VSATP +E + I EQIIRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFEEFEGKLNQTIFVSATPSQYEFQHSTN-IAEQIIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y IN +G R+L+T LTK+M+EDLTEYL + ++ Y+HS + T++ Sbjct: 423 VKPIKGQIDDLYANINETISKGFRVLVTTLTKKMSEDLTEYLKDMGVKTEYLHSSIDTIK 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YADTITK++ AI ET RRR+ Q+++N+++ I P+++ + I +VI + ED Sbjct: 543 NSESKVIMYADTITKAMDKAISETNRRRKIQMQYNEEYGIVPRTILKDIRDVIQTKVSED 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++SK++ + + K+M AA L FE+AA IRD+I++LK Sbjct: 603 KEEYIVN---NKDTMSKEQIEKLINKYEKEMKKAAKELQFEKAAEIRDKIQKLK 653 >gi|270290697|ref|ZP_06196921.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4] gi|270280757|gb|EFA26591.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4] Length = 667 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ GI EK Q+LLG TG+GKTFT++ VI+ + +P ++++ Sbjct: 10 FELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID +RH Sbjct: 70 HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + L++G +++ +LL LV QY+R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRELVDIQYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ E + RV FG++I+ + E LTG+ I + + I I+ Sbjct: 190 DIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEIIGDRDHITIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A++ I+ ELK RL+ELE +G+LLEAQRL+QR TYD+EML G Sbjct: 250 PATHFMTNEDRMEHAIEGIEAELKDRLVELEGQGKLLEAQRLKQRTTYDIEMLREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + +SATPG +E + +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETARTDH-VVQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+YL + I+V Y+HS+VKTLE Sbjct: 429 VRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDVKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIR+LRLGK+DVLVGINLLREG+D+PE LVAILDADKEGFLR+ S+IQ GRAAR Sbjct: 489 RTRIIRNLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 N + VI+YAD +T+S++ IDET RRR Q +NK+H I P ++K+ I +I E Sbjct: 549 NEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSLISATTETE 608 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + +D + +K K ++SL QM AA L+FE AA +RD + LK+ Sbjct: 609 DTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVLELKA 664 >gi|229816345|ref|ZP_04446652.1| hypothetical protein COLINT_03395 [Collinsella intestinalis DSM 13280] gi|229808101|gb|EEP43896.1| hypothetical protein COLINT_03395 [Collinsella intestinalis DSM 13280] Length = 749 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/686 (52%), Positives = 474/686 (69%), Gaps = 33/686 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AIA L++G+ ++ Q+LLGVTGSGKTFTMAK IEA+ +P +VMA Sbjct: 29 FEVVSPFEPSGDQPQAIASLVQGVRDGDRYQVLLGVTGSGKTFTMAKTIEALGKPTLVMA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SE K FFP+NAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+++ +RH Sbjct: 89 PNKTLAAQLASELKEFFPNNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEVEMLRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D IVV+SVSCIYGIGS E Y+ + + + +E+ E + SL+ QY R Sbjct: 149 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKEPLERDEFIHSLIDIQYDRN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD ++++P + E R FG+++E I+E +TG+ +R + I ++ Sbjct: 209 DYDLARGTFRVRGDVVDVYPPYAEH-PLRFEFFGDEVELIAEIDEVTGEIMREFDAIPVW 267 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT +P + A+K I+EEL+ R+ EL+ +LLEAQRLEQR +YDLEMLET G Sbjct: 268 PASHYVTEKPKVTAALKSIEEELEARVAELKANDKLLEAQRLEQRTSYDLEMLETMGFTT 327 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D L +DESHVT+PQI GM+ GD RK TL E+ Sbjct: 328 GIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKVTLVEH 387 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR++E+ P I VSATPG +EL Q VEQIIRPTGL+DP ++ Sbjct: 388 GFRLPSALDNRPLRYDEFEARIPQFIYVSATPGDYELRVSQN-NVEQIIRPTGLLDPKID 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ DEI + R+L+T LTKRMAEDLT++L + IRV YMHS+ T++ Sbjct: 447 VRPVRGQIDDLIDEIRERVARHERVLVTTLTKRMAEDLTDHLLDAGIRVNYMHSDTATMD 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R LR GK DVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 507 RVEILRSLRQGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N +V++YAD+IT S++ AIDET RRR Q +N++H I PQ+V+ I ++ I Sbjct: 567 NAEGEVVMYADSITDSMREAIDETNRRRAIQTAYNEEHGIKPQTVRRSINDISSFIAEAE 626 Query: 738 --------------------------LEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRK 769 ED A + I L ++ ++++ Sbjct: 627 ENVGKKDRSRGDTLGHGAFFSPAGTEGEDDACEGVGERIARDFADLPTEELVRVIETMED 686 Query: 770 QMHLAADNLNFEEAARIRDEIKRLKS 795 M A++ ++FEEAAR+RD + +LK+ Sbjct: 687 DMRAASEAMDFEEAARLRDIVVQLKA 712 >gi|312139895|ref|YP_004007231.1| excinuclease ABC subunit b uvrb [Rhodococcus equi 103S] gi|311889234|emb|CBH48548.1| excinuclease ABC subunit B UvrB [Rhodococcus equi 103S] Length = 764 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/690 (51%), Positives = 481/690 (69%), Gaps = 31/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI +L + + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 74 FQVVSEYEPAGDQPQAIDELERRLREGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 133 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 134 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 193 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY +QL++G V++ LL LV QY R Sbjct: 194 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLEVGVEVDRDALLRLLVDVQYNRN 253 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R V+T++I+ Sbjct: 254 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVDTVRIF 312 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL+ RL +LE G+LLEAQRL R YDLEM++ G C Sbjct: 313 PATHYVAGPERMERAVQDIEAELEERLADLENRGKLLEAQRLRMRTQYDLEMIKQVGFCS 372 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI MY GD RK L E+ Sbjct: 373 GIENYSRHIDGRPAGSAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 432 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG++EL Q G VEQ+IRPTGLVDP V Sbjct: 433 GFRLPSATDNRPLTWEEFAGRIGQTVYLSATPGAYELGQAGGEFVEQVIRPTGLVDPEVV 492 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI +++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 493 VKPTKGQIDDLVHEIRERSERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 552 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 553 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 612 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N + ++PQ +++KI +++D + E+ Sbjct: 613 NVSGQVHMYADKITDSMQRAIEETERRREKQIAYNLEKGVDPQPLRKKIADILDQV-YEE 671 Query: 741 AATTNISIDAQQLSLSKKK---GKAH------------------------LKSLRKQMHL 773 A T + + + S+ + G+A +K L QM Sbjct: 672 AEDTEVGVGGSGRNASRGRRAQGEAGRAVSAGIYEGRDVKSMPRAELADLVKELTDQMMN 731 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE A R+RDEI LK +G+D Sbjct: 732 AARDLQFELAGRLRDEIADLKKE--LRGMD 759 >gi|291542540|emb|CBL15650.1| Excinuclease ABC subunit B [Ruminococcus bromii L2-63] Length = 652 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/655 (53%), Positives = 461/655 (70%), Gaps = 7/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP I +L+ I++ + Q LLGVTGSGKTFTMA VI+ +QRP +V+A Sbjct: 3 FKLHSKYQPTGDQPQTIEKLVNSINAGNREQTLLGVTGSGKTFTMANVIQKVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYV +TDTYIEK+SSIN++ID++RH Sbjct: 63 HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYVAQTDTYIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +G Y M++ L+ G + EL+ LV+ QY+R Sbjct: 123 SATLALSERRDVIIVASVSCIYSLGDPIDYRNMVISLRPGMEKSRDELVKKLVELQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R FRV GD +EIFP+ D RV FG++I+ ISE PLTG+ ++ IY Sbjct: 183 DVSFTRNKFRVRGDVVEIFPAASNDSIIRVEFFGDEIDRISEINPLTGELKAVLKHAAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A+ I EL+ RL + G+LLEAQRLEQR YD+EML+ G C Sbjct: 243 PASHYIVSGDKMKKALAEIDRELEERLAYFRENGKLLEAQRLEQRTRYDMEMLQEIGFCT 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR ++GR PG P TL Y P+D LLFVDESHVT+PQ+ GM+ GD+ RK +L +Y Sbjct: 303 GIENYSRIMSGRAPGSSPYTLLSYFPDDFLLFVDESHVTLPQVRGMFAGDYARKKSLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +ELE+ ++ EQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFDEFYSKINQAVYVSATPGDFELEKS-AVVAEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ + R L+T LTK+MAEDLT YL + IRVRYMH ++ T+E Sbjct: 422 VRPTEGQLDDLVSEINIRTAKNQRTLVTTLTKKMAEDLTAYLEKLGIRVRYMHHDIDTVE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG+FDVLVGINLLREGLDIPE LVA+LDADKEGFLRS SLIQ GRAAR Sbjct: 482 RMEIVRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSTRSLIQIAGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD++T S+++AI ET RRRE Q ++N +H I P+++ +K+ ++++ +D Sbjct: 542 NSEGTVIMYADSVTPSMKVAITETQRRREIQNKYNVEHGIVPKTIVKKVSDILEISTHDD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + N LSK + + ++ L K+M AA L FE AA +RD+IK+L+ Sbjct: 602 SEFKNTK------KLSKAQKQQLIEKLTKEMKAAAKLLEFEHAAYLRDKIKKLRG 650 >gi|149177973|ref|ZP_01856570.1| excinuclease ABC subunit B [Planctomyces maris DSM 8797] gi|148843166|gb|EDL57532.1| excinuclease ABC subunit B [Planctomyces maris DSM 8797] Length = 681 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/666 (52%), Positives = 470/666 (70%), Gaps = 20/666 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ FQ+++++ PSGDQPAAIA L+ GI + + Q+LLGVTGSGKTFTMA VI + RPA+ Sbjct: 1 MSVFQLKSEFQPSGDQPAAIAGLVNGIKAGKSDQVLLGVTGSGKTFTMANVIAELGRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR Sbjct: 61 VLSHNKTLAAQLYSEFKEFFPENAVSYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDR 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R AT +L+ R D IVV+SVSCIYG+GS + Y +M++ L++G+ +++ E+L L+ QY Sbjct: 121 LRLLATSALVSRRDVIVVASVSCIYGLGSPKDYLEMMIPLRVGEEIDRDEMLRKLIDIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R ++ + R FRV GD +E +P++ E+ A+R+ +G++IE ++ PLTG+ +R V+ Sbjct: 181 DRNNVELARAKFRVRGDVVECWPAY-EEFAFRIEFWGDEIENLAIIDPLTGEVLRTVKEA 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+V P+ + +A++ I+ EL R+ L+ EG+LLE+QRL R YD+E+LE G Sbjct: 240 YIYPAKHFVLPQERIESAIQEIQTELDERIQVLQSEGKLLESQRLSARTRYDMELLEEVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR L GR PG PP TL ++ PED LLFVDESHVT Q+ MY GD RK L Sbjct: 300 FCPGIENYSRALAGRKPGSPPDTLLDFFPEDYLLFVDESHVTCSQVRAMYAGDRSRKTNL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLP +DNRPL F+EWN R T+ VSATPG WELE+ +G +VEQ+IRPTGL+DP Sbjct: 360 VDHGFRLPMALDNRPLTFDEWNARRKQTVFVSATPGDWELERVEGEVVEQVIRPTGLIDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + I AR QV + +EI R+L+T LTKR+AEDL Y E IR +MHSE+ Sbjct: 420 VIRIEPARGQVPHLKEEILKRVAVNERVLVTTLTKRLAEDLASYFQEEGIRCAWMHSELD 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ER+EI+R LR K+DV++GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGR Sbjct: 480 AFERVEILRGLREQKYDVVIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 +AR+VN++VILYAD +T S+Q A+DET RRR Q E+N++H I P+S+K+ I I+ Sbjct: 540 SARHVNAEVILYADRVTPSMQNAMDETERRRAIQKEYNREHGITPESIKKAIKRGIEE-- 597 Query: 738 LEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 I+A+Q S+ + L L ++M AA+ L FE AA +RD Sbjct: 598 ---------EIEARQFVRESVGFKDESEYITQEFLGELEQEMLAAAEKLEFERAALLRDR 648 Query: 790 IKRLKS 795 I LK+ Sbjct: 649 IDDLKN 654 >gi|260663142|ref|ZP_05864034.1| excinuclease ABC, B subunit [Lactobacillus fermentum 28-3-CHN] gi|260552334|gb|EEX25385.1| excinuclease ABC, B subunit [Lactobacillus fermentum 28-3-CHN] Length = 671 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 469/658 (71%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AIA L KG+ + Q+LLG TG+GKTFT++ VI+ + RP ++++ Sbjct: 10 FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ERND IVV+SVS I+G+GS Y +V L++G + + LL LV+ Q+ R Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ E+ A RV FG++I+ I E LTG+ I + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + KEG+LLEAQRL+QR TYD+EM+ G Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +E+ I +SATPG +E Q +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+L+T LTK+M+EDL++YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 N N VI+YADT+T S++ AIDET RRR Q +NK+H I P+++ + I E I + + Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIIKPIQEAIKAVKPVE 608 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ A ++ + K+ +A + L +QM AA L+FE+AA +RD + L S Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMELTS 666 >gi|15678470|ref|NP_275585.1| excinuclease ABC subunit B [Methanothermobacter thermautotrophicus str. Delta H] gi|3122998|sp|O26542|UVRB_METTH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|2621508|gb|AAB84948.1| excinuclease ABC subunit B [Methanothermobacter thermautotrophicus str. Delta H] Length = 646 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/656 (54%), Positives = 467/656 (71%), Gaps = 13/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI L+ GI + + Q LLGVTGSGKTFT+A VI +Q+P +V++ Sbjct: 4 FKLVSDYRPLGDQPKAIRSLVNGIKAGMREQTLLGVTGSGKTFTVANVIAEVQKPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP NAVEYFVSYYD+YQPEAY+P+TDTYI+KE+SIN++IDRMRH Sbjct: 64 HNKTLAAQLYEEFREFFPENAVEYFVSYYDFYQPEAYIPQTDTYIDKEASINDEIDRMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLL R+D IVVSSVSCIYGIG+ Y + + L++G ++E+L L+ QY+R Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGIGAPTDYGEFTLHLEVGSGPGREEVLEGLINMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD++EI P H R+ FG++I+ IS + +TG++I+ ++ + I+ Sbjct: 184 DVEFDRGQFRVRGDTVEINPIH-GTPPIRIEFFGDEIDSISTVHRVTGRRIQKLDRVTIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P L A++ I+ EL+ RL EL + +LLEAQRLEQR +D+EML G CQ Sbjct: 243 PAKHFVIPEDRLQRAIESIEAELEERLTELRSQNKLLEAQRLEQRTRFDMEMLREMGYCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+GR GE P TL +Y PED L +DESHVT+PQI GMY GD RK TL EY Sbjct: 303 GIENYSMHLSGRKWGEKPNTLLDYFPEDFLTVIDESHVTVPQIRGMYNGDRARKDTLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ I VSATPG +EL + Q IVEQIIRPTGLVDP V Sbjct: 363 GFRLPSARENRPLRFDEFQESVNQVIYVSATPGRYELSRSQN-IVEQIIRPTGLVDPEVR 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+D+ EI ++G R+L+T LTKRMAEDLT+Y ++VRY+HSE+ TLE Sbjct: 422 IRPVKGQVDDLLSEIRRRVERGERVLVTTLTKRMAEDLTDYYSRVGVKVRYLHSEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR G+FD LVG+NLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RVEIIDDLRRGEFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V++YA T S+ A++ T RRR+ Q+E+N++H I P+S + + E E+ Sbjct: 542 NVNGEVLIYAGRFTDSVMAAVETTNRRRKLQMEYNRRHGIKPRSTRRTLRE-------EE 594 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 N+ +D + + + +K L +M AA NL FE AARIRD I LKS+ Sbjct: 595 GPLRNLKVD----EIPDHELELIIKDLEAEMRDAARNLEFERAARIRDRIMSLKSN 646 >gi|227548123|ref|ZP_03978172.1| excision endonuclease subunit B [Corynebacterium lipophiloflavum DSM 44291] gi|227079785|gb|EEI17748.1| excision endonuclease subunit B [Corynebacterium lipophiloflavum DSM 44291] Length = 697 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/660 (52%), Positives = 469/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI +L + ++ EK +LLG TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISEYQPSGDQPGAIKELNERLNRGEKDVVLLGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT LL R D +VV+SVSCIYG+G+ +SY + L++G+ VE+ L LV QY+R Sbjct: 148 SATSVLLSRRDVVVVASVSCIYGLGTPQSYLDRSIVLRVGEEVERDRFLRLLVDVQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I P++ E+VA RV FG++++E+ +PLTG+ + E ++I+ Sbjct: 208 DIDFKRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDELYYIHPLTGEVLSREEEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IK EL RL +LE G+LLEAQRL R YDLEM++ G C Sbjct: 267 PATHYVATDDRMEKAIEAIKLELADRLEDLENRGKLLEAQRLRMRTEYDLEMIQQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHMDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + +SATPG +ELE G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLKFDEFEARMGQVVYMSATPGDYELEATGGEFVEQVIRPTGLVDPQVH 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ +EI + R+L+T LTKRMAEDLT+YL + I+VRY+HS++ TL+ Sbjct: 447 VRPTKGQIDDLIEEIRQRVSRDERVLVTTLTKRMAEDLTDYLLDNGIKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 NV+ VI+YAD +T S++ AI+ET RRREKQL +N +H I+PQ +++KI +++D + Sbjct: 567 NVSGAVIMYADKVTDSMRDAIEETERRREKQLAYNVEHGIDPQPLRKKIADILDQVYDNA 626 Query: 738 -LEDAATTNISI--DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+ A ++ S+S K + + L QM AA L FE A R+RDEI L+ Sbjct: 627 DGEETAGGEAAVVEKPDVASMSSKDVQKLIDDLTAQMGAAARELKFELAGRLRDEIAELR 686 >gi|294784643|ref|ZP_06749932.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_27] gi|294487859|gb|EFG35218.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_27] Length = 663 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/659 (52%), Positives = 482/659 (73%), Gaps = 16/659 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ +DY P+GDQPAAI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRPA++ Sbjct: 4 NLFKIHSDYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ L+ +Y Sbjct: 124 RNAATTALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKKLIALRYD 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R DI RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + +K IK++LK+ + + E + +LLEAQRL+QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD RK +L Sbjct: 303 YCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595 Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790 ED + I+ ++ +KK + KA ++ L K++ + L+FE+A +RDE+ Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653 >gi|253583761|ref|ZP_04860959.1| excision endonuclease subunit UvrB [Fusobacterium varium ATCC 27725] gi|251834333|gb|EES62896.1| excision endonuclease subunit UvrB [Fusobacterium varium ATCC 27725] Length = 660 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/657 (53%), Positives = 482/657 (73%), Gaps = 5/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + Y P+GDQP AI ++ I++ K Q+LLGVTGSGKTFT+A +IE QRPA+++ Sbjct: 1 MFKIHSKYSPTGDQPEAIKKITDNINNGVKDQVLLGVTGSGKTFTVANIIEKTQRPALIL 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SSIN++I+++R Sbjct: 61 APNKTLAAQLYSEYKSFFPDNAVEYFVSYYDYYQPEAYIVTTDTYIEKDSSINDEIEKLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT +L+ R D I+V+SVS IYG+GS E+Y +M + + +++KEL+ L+ +Y+R Sbjct: 121 HAATAALMNRRDVIIVASVSAIYGLGSAETYRKMTIPIDRQTGIDRKELIERLISIRYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378 DI RG FR+ GD I+I+PS++E +R+ +G+D+EEISE LTGQKIR N+E I Sbjct: 181 NDIAFERGKFRIKGDVIDIYPSYME-TGYRLEYWGDDLEEISEINTLTGQKIRKNLERIV 239 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y + Y+T + I+++LK+ + EK G+LLEAQRL+QR YD+EM+ G Sbjct: 240 LYPATQYLTADGDNERILAEIQKDLKIEVEAFEKRGKLLEAQRLKQRTEYDMEMIREIGY 299 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSRYL+G+ GE P TL EY P+D L+F+DESH++IPQI GMY GD RK L Sbjct: 300 CKGIENYSRYLSGKKEGETPDTLLEYFPKDFLIFIDESHISIPQIRGMYNGDRARKTALV 359 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRL + +DNRPL+FEE+ + ++ VSATPG +E+E G I EQ+IRPTG++DP Sbjct: 360 ENGFRLKAALDNRPLKFEEFRKIADQSVFVSATPGDFEIEVSHGHIAEQLIRPTGILDPV 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+RS + QV+D+ +EI + A + R+L+T LTK+MAE+LTEY +RV+YMHS++ T Sbjct: 420 IEVRSTKNQVDDLLEEIRIRADRKERVLVTTLTKKMAEELTEYYLGFGVRVKYMHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LERI+II+ LR G+FD LVGINLLREGLDIPE LVAIL+ADKEGFLRS+ SL+QTIGRA Sbjct: 480 LERIDIIKGLRKGEFDALVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ +VILY D +T S++ AIDET RRR+ Q E+N +NI+P+++ ++I E D I L Sbjct: 540 ARNIEGRVILYGDIMTDSMKQAIDETNRRRKIQNEYNVYNNIDPKTIVKEISE--DLINL 597 Query: 739 EDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N + D A++ S+K + + L+KQ+ + L+FE A RDE+ +LK Sbjct: 598 DYGLDINETEDKAKKTFTSRKDIEKEIIKLQKQIAKLSKELDFENAIIKRDEMTKLK 654 >gi|331701687|ref|YP_004398646.1| UvrABC system protein B [Lactobacillus buchneri NRRL B-30929] gi|329129030|gb|AEB73583.1| UvrABC system protein B [Lactobacillus buchneri NRRL B-30929] Length = 668 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/656 (52%), Positives = 466/656 (71%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI +L+ GI+ +K Q+L G TG+GKTFT++ VI + +P +V++ Sbjct: 10 FDLVSKYKPTGDQPDAIKKLVAGINEGKKAQILKGATGTGKTFTISNVIAQVNKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y +V L++G ++E+ L LV QY R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPSEYRNHVVSLRVGQTIERDHFLRQLVDIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I E LTG+ I + + I I+ Sbjct: 190 DIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVIGDRDHIAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T +N A+ IK+E+ ++ + EKEG+LLEAQRL+QR TYD+EM+ G Sbjct: 250 PATHFLTSDDVMNVALPEIKDEMDKQVAKFEKEGKLLEAQRLKQRTTYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD RK L Y Sbjct: 310 GIENYSRFMDRRKPGQPPFTLLDFFPDDFLLVVDESHQTMPQIRGMYNGDQARKQQLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL E+ + +SATPG +EL+Q + +V Q+IRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLTLSEFEQHVHQVVYMSATPGPYELDQTKD-VVNQVIRPTGLLDPTID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SLIQTIGRA+R Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRASR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 N + VI+YADT+T S++ AIDET RR Q+ +NKKH I P ++ + I +I + Sbjct: 549 NEHGAVIMYADTVTDSMKAAIDETAHRRAIQIAYNKKHGITPTTIVKPIRNLISITKGSD 608 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 DA + +++ +SKK K L L ++M AA L+FE+AA +RD I LK Sbjct: 609 DAGEKDDFVESDFEQMSKKDQKDMLARLTEEMRDAAKKLDFEQAATLRDTIIELKG 664 >gi|289679886|ref|ZP_06500776.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae FF5] Length = 558 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/556 (60%), Positives = 428/556 (76%), Gaps = 1/556 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLTG+ IR + Y Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR +DLEM+ G C Sbjct: 244 PKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY+GD RK TL EY Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ++RPTGLVDP +E Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + +RVRY+HS++ T+E Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKS 696 N+N + ILYAD IT S Sbjct: 543 NLNGRAILYADRITGS 558 >gi|116625433|ref|YP_827589.1| excinuclease ABC subunit B [Candidatus Solibacter usitatus Ellin6076] gi|116228595|gb|ABJ87304.1| Excinuclease ABC subunit B [Candidatus Solibacter usitatus Ellin6076] Length = 659 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 471/655 (71%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P GDQ AIA+L +G+ E+ Q+LLGVTGSGKTFTMAKVIEA+ RPA+V+A Sbjct: 3 FRLAVTYEPRGDQVNAIAELTRGLREGEQHQVLLGVTGSGKTFTMAKVIEAVNRPALVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P +D YIEK++++N+++D++R Sbjct: 63 HNKTLAAQLYHEFKTFFPENAVEYFVSYYDYYQPEAYIPASDVYIEKDATVNDELDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT+SL ER DC++VSSVSCIYG+GS E+Y M++ L+ G + + ++++ LV+ Y R Sbjct: 123 AATKSLFERRDCVIVSSVSCIYGLGSPEAYYGMLLMLEKGQKISRNQIVTRLVEILYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IE++P++ +D A+R+ ++G++IE +S+ PL GQ + + + IY Sbjct: 183 DADFRRGTFRVRGDVIEVYPTY-DDDAYRIELWGDEIENLSQIDPLLGQVKQTYQRLPIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV T AM+ I+ EL+ EL +G+ +EAQRL QR +DLEM++ G C Sbjct: 242 PKTHYVMSAETKEDAMQSIRNELEWWHKELVNQGKAIEAQRLFQRTMFDLEMMKEIGYCH 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +GR PGE PPTL +Y+P D+++F+DESH T+PQ+ GMY GD RK L + Sbjct: 302 GIENYSRHFSGRLPGEAPPTLLDYLPNDAVMFLDESHQTVPQLHGMYHGDRSRKEVLVAH 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFR+PS +DNRPL FEE+ + VSATPG +EL + G++VEQIIRPTGL+DP VE Sbjct: 362 GFRMPSALDNRPLTFEEFEHRVNQLVYVSATPGPYELTKSSGVVVEQIIRPTGLLDPTVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+D+ +I + RIL+T LTKRMAEDL+EY E +R RY+HSEV TL+ Sbjct: 422 IRPVKGQVDDLLGQIRARVENNQRILVTTLTKRMAEDLSEYYSEVGVRCRYLHSEVTTLD 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+RDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS +LIQTIGRAAR Sbjct: 482 RIKILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSWGALIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V ILYAD +T S++ A+ ET RRR+ Q+E+N++++I PQS+ + I + + D Sbjct: 542 HVEGHAILYADVMTDSMRKALAETARRRQTQIEYNEENHITPQSIIKAIDMSLVAVAEGD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + D + L+ + + L ++M AA FE AA++RD +K LK+ Sbjct: 602 YVTVPLEDDPEVEDLTPDQRLRFIGELEERMREAARKFEFERAAQLRDRVKALKA 656 >gi|325679137|ref|ZP_08158731.1| excinuclease ABC, B subunit [Ruminococcus albus 8] gi|324109261|gb|EGC03483.1| excinuclease ABC, B subunit [Ruminococcus albus 8] Length = 656 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 467/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY SGDQP A+ L+KGI S + Q L+GVTGSGKTFTMA VIE + RP +V+A Sbjct: 4 FQLVSDYKLSGDQPQAVDALVKGIQSGMREQTLMGVTGSGKTFTMANVIERLNRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYVP TD YIEK+SSIN++ID++RH Sbjct: 64 HNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDVYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++ ER D I+V+SVSCIY +G Y M+V ++ G + EL++ LV QY+R Sbjct: 124 SATSAITERRDVIIVASVSCIYSLGDPSEYKSMVVSIRKGAEKSRDELIAQLVGIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +R FRV GD +EIFP++ D A RV FG++I+ I+E LTG+++ + ++ Sbjct: 184 DINFVRNKFRVRGDIVEIFPANSTDTALRVEFFGDEIDRITEVNVLTGERLSELTHAAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ R + A+ IKEEL R+ E +G L+EAQR++QR YD+EMLE G C Sbjct: 244 PASHYIVGREKMLDAIGEIKEELAERVKYFEDKGMLIEAQRIQQRTNYDMEMLEEIGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L R G P TL +++P+D LL VDESHV++PQ+ GMY GD RK TL Y Sbjct: 304 GIENYSRVLARRPKGAVPFTLLDFMPDDFLLMVDESHVSLPQVRGMYAGDRARKETLVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I VSATPG E E+ IVEQ+IRPTGL+DP + Sbjct: 364 GFRLPSALDNRPLQFDEFYSHINQAIFVSATPGPIEKEKS-AQIVEQVIRPTGLLDPLIS 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ EIN ++ R+L+T LTK+MAEDLT YL +++VRYMH ++ ++E Sbjct: 423 VRPSDGQIEDLLSEINQRVEKNQRVLVTTLTKKMAEDLTAYLKGFDVKVRYMHHDIDSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+++LIQTIGRAAR Sbjct: 483 RMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESALIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD++T+S++ AI ET RRR Q+++N++H I P+++ + I +VI+ E+ Sbjct: 543 NAEGTVIMYADSVTRSMENAIRETERRRAIQMQYNEEHGITPKTIVKDIRDVIEISTKEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + Q LSK + + ++ L K+M AA L FE AA +RD+I LK Sbjct: 603 AEYSA----RQATKLSKAEQQRLIEKLTKEMKEAAKLLEFEHAAFLRDKIAELKG 653 >gi|291518275|emb|CBK73496.1| excinuclease ABC, B subunit [Butyrivibrio fibrisolvens 16/4] Length = 665 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/655 (52%), Positives = 469/655 (71%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L++G ++Q LLGVTGSGKTFTMA VIE + +P +++A Sbjct: 9 FKLHSEYKPTGDQPQAIEDLVRGFKEGNQMQTLLGVTGSGKTFTMANVIEKLNKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYI K+SSIN++ID++R Sbjct: 69 HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIAKDSSINDEIDKLRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+VSSVSCIYGIG + + M+V L+ GD ++ +++ L+ QY R Sbjct: 129 SATASLSERRDVIIVSSVSCIYGIGEPDDFQNMMVSLRPGDFKDRDDVIHELINIQYMRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+ P+++ D R+ FG++I+ I E +TGQ R +E + I+ Sbjct: 189 DMDFDRGTFRVRGDVLEVIPANVSDYGIRIEFFGDEIDRICETDIMTGQVKRELEHVAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ +N+A I+ EL+ R+ + E +L+EAQR+ +R +D+EML TG C Sbjct: 249 PASHYVIPQDKINSACASIEAELEERVKFFKSEDKLIEAQRIAERTNFDIEMLRETGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++T + PGEPP L +Y +D L+ +DESH+T+PQI GM+ GD RK TL EY Sbjct: 309 GIENYSRHMTNQQPGEPPKCLIDYFDDDFLIIIDESHITLPQIRGMFAGDQARKRTLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATPG +E E+ + + EQ+IRPTGL+DP VE Sbjct: 369 GFRLPSALDNRPLNFGEFESKIDQIMFVSATPGDYE-EEHEMLRTEQVIRPTGLLDPEVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+++EI + ++++T LTKRMAEDLT+YL E +RV+YMHS++ T+E Sbjct: 428 VRPVEGQIDDLFNEIKKETAKKNKVMITTLTKRMAEDLTDYLAELGVRVKYMHSDIDTME 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 488 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADT+T+S++ AI ET RRRE Q+ +N+ H I P+++++ + E+I + +D Sbjct: 548 NSEGHVIMYADTMTESMEKAISETERRREIQMAYNEAHGITPKTIQKSVRELIS--ISKD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + ++K++ + ++ ++K+M AA LNFE AA RD++ LK+ Sbjct: 606 IAKKEMQFKKDPEEMNKQELEKLIEDIQKKMKKAASELNFEAAAEYRDKMVELKN 660 >gi|239978861|ref|ZP_04701385.1| excinuclease ABC subunit B [Streptomyces albus J1074] gi|291450744|ref|ZP_06590134.1| excinuclease ABC subunit B [Streptomyces albus J1074] gi|291353693|gb|EFE80595.1| excinuclease ABC subunit B [Streptomyces albus J1074] Length = 715 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/702 (50%), Positives = 482/702 (68%), Gaps = 40/702 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQPAAIA L + + + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERTVAPFEVVSPYQPSGDQPAAIADLDRRVRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+G+ +++ LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDALLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V+ QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE ++ +PLTG+ Sbjct: 184 RFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIETLTTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + + + ++ SHYV + A+ I++EL RL LEK+G+LLEAQRL R TYD+ Sbjct: 243 ISDEQQLYVFPASHYVAGPERMERAVNDIEQELGERLTVLEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML GSC IENYS + GR PG PP TL +Y PED LL +DESHVT+PQI M+ GD Sbjct: 303 EMLRQIGSCSGIENYSMHFDGREPGTPPHTLLDYFPEDFLLVIDESHVTVPQIGAMHEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGNYELSRSDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N ++ I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADRITPAMEKAIDETNRRREKQIAYNTENGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTN-ISIDAQQLSLSKKKG----------------------------- 760 +++ I ED T + +Q K K Sbjct: 602 DIVATIAREDVDTEALLGTGYRQTKDGKAKAPVPDLGGGYDAPKAAKGGKKAAKKAAGTP 661 Query: 761 --------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ +K Sbjct: 662 TDRPAAELAGQIEEMTNRMRAAAADLQFEVAARLRDEVGEMK 703 >gi|283458177|ref|YP_003362794.1| helicase subunit of the DNA excision repair complex [Rothia mucilaginosa DY-18] gi|283134209|dbj|BAI64974.1| helicase subunit of the DNA excision repair complex [Rothia mucilaginosa DY-18] Length = 722 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/699 (50%), Positives = 480/699 (68%), Gaps = 47/699 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA+L + + + EK +L+G TG+GK+ T A +IEA+QRP +V+ Sbjct: 14 FEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAWLIEAVQRPTLVLV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VSCIYG+G+ E Y +V L+ G+ V++ ELL V QY R Sbjct: 134 SATNSLLTRRDVVVVATVSCIYGLGTPEEYVAQMVTLRRGEEVDRDELLRQFVAMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A R+ FG++IE I +PLTG+ IR E + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EENAIRIEFFGDEIEAIYTLHPLTGEVIREEEEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A+ I++EL+ RL LE +G+LLEAQRL R TYDLEM+E G C Sbjct: 253 PASHYIAGAERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P L +Y P+D LL +DESHVT+PQ+ MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ TI +SATPG +EL Q G VEQIIRPTGL+DP + Sbjct: 373 GFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLIDPEIV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +EI + ++ R+L+T LTKRMAEDLTEYL + ++V+Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKVQYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+++AIDET RRRE Q +N++H I+PQ +++KI ++ D + E+ Sbjct: 552 NVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNREHGIDPQPLRKKIADITDVLAREE 611 Query: 741 AATTNI-------SIDAQQLSLSKKKGKAH------------------------------ 763 T + A+ +S K G A Sbjct: 612 EDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAEARVRADGLAAA 671 Query: 764 --------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +QM +AA+NL FE AAR+RDE+ LK Sbjct: 672 PAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLK 710 >gi|260497929|ref|ZP_05816047.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_33] gi|260196544|gb|EEW94073.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_33] Length = 663 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/659 (53%), Positives = 480/659 (72%), Gaps = 16/659 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ ++Y P+GDQP AI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP+++ Sbjct: 4 NLFKIHSEYRPTGDQPTAINSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ LV +Y Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGISRKELIKRLVDLRYN 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + +K IK++LK+ + + E E +LLEAQRL+QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKLLEAQRLKQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL G+NPGE P TLFEY P+D LLF+DESH+T+PQI GMY GD RK +L Sbjct: 303 YCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFIDESHITVPQIRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +ELE I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFELEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595 Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790 ED + I+ ++ SKK + KA ++ L K++ + L+FE+A +RDE+ Sbjct: 596 -EDLINLDYGIEEKKFENSKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653 >gi|145295505|ref|YP_001138326.1| excinuclease ABC subunit B [Corynebacterium glutamicum R] gi|140845425|dbj|BAF54424.1| hypothetical protein [Corynebacterium glutamicum R] Length = 720 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/673 (53%), Positives = 478/673 (71%), Gaps = 11/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQPAAI +L + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 49 FVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 108 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 109 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 168 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ +SY V L +G+ +++ L LV QY+R Sbjct: 169 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 228 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RG FRV GD+++I P++ E++A R+ FG++I+ + +PLTG IR V I+I+ Sbjct: 229 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 287 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IK EL++RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 288 PATHYVAGPERMEKAVTDIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 347 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 348 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 407 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE++ R T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 408 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 467 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL+ Sbjct: 468 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 527 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 528 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 587 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D + Sbjct: 588 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 647 Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D A + S DA + S+ K+ + + L QM AA L FE A R+RDEI Sbjct: 648 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARELKFELAGRLRDEIFE 707 Query: 793 LKSSPYFQGLDDS 805 LK +G+ D+ Sbjct: 708 LKKE--LRGIKDA 718 >gi|333027919|ref|ZP_08455983.1| putative excinuclease ABC subunit B [Streptomyces sp. Tu6071] gi|332747771|gb|EGJ78212.1| putative excinuclease ABC subunit B [Streptomyces sp. Tu6071] Length = 720 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/699 (50%), Positives = 481/699 (68%), Gaps = 42/699 (6%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 + + F++ + Y PSGDQP AIA+L K + EK +LLG TG+GK+ T A +IE +QRP Sbjct: 12 RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 71 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++ Sbjct: 72 TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 131 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+GD +++ ELL V Sbjct: 132 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDELLRRFVDI 191 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I + + Sbjct: 192 QYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 250 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ SHY+ + A+K I++EL++RL ELEK+G+LLEAQRL R TYD+EML Sbjct: 251 QVYVFPASHYIAGPERMERAIKGIEKELEVRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 310 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G+C +ENYS + R PG PP TL +Y PED LL +DESHVT+PQI MY GD RK Sbjct: 311 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 370 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL ++GFRLPS +DNRPL++EE+ + +SATPG++EL + G VEQIIRPTGLV Sbjct: 371 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 429 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I VRY+HS+ Sbjct: 430 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 489 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTI Sbjct: 490 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 549 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N + I+PQ +++KI +++ Sbjct: 550 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 609 Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762 I E+ T ++ + + K GKA Sbjct: 610 IAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKAATAPTDQ 669 Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ +K Sbjct: 670 PGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 708 >gi|325674226|ref|ZP_08153915.1| excision endonuclease subunit UvrB [Rhodococcus equi ATCC 33707] gi|325554906|gb|EGD24579.1| excision endonuclease subunit UvrB [Rhodococcus equi ATCC 33707] Length = 718 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/690 (51%), Positives = 481/690 (69%), Gaps = 31/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI +L + + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FQVVSEYEPAGDQPQAIDELERRLREGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY +QL++G V++ LL LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLEVGVEVDRDALLRLLVDVQYNRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R V+T++I+ Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVDTVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL+ RL +LE G+LLEAQRL R YDLEM++ G C Sbjct: 267 PATHYVAGPERMERAVQDIEAELEERLADLENRGKLLEAQRLRMRTQYDLEMIKQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI MY GD RK L E+ Sbjct: 327 GIENYSRHIDGRPAGSAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG++EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSATDNRPLTWEEFAGRIGQTVYLSATPGAYELGQAGGEFVEQVIRPTGLVDPEVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI +++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 447 VKPTKGQIDDLVHEIRERSERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N + ++PQ +++KI +++D + E+ Sbjct: 567 NVSGQVHMYADKITDSMQRAIEETERRREKQIAYNLEKGVDPQPLRKKIADILDQV-YEE 625 Query: 741 AATTNISIDAQQLSLSKKK---GKAH------------------------LKSLRKQMHL 773 A T + + + S+ + G+A +K L QM Sbjct: 626 AEDTEVGVGGSGRNASRGRRAQGEAGRAVSAGIYEGRDVKSMPRAELADLVKELTDQMMN 685 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE A R+RDEI LK +G+D Sbjct: 686 AARDLQFELAGRLRDEIADLKKE--LRGMD 713 >gi|257869223|ref|ZP_05648876.1| excinuclease ABC [Enterococcus gallinarum EG2] gi|257803387|gb|EEV32209.1| excinuclease ABC [Enterococcus gallinarum EG2] Length = 665 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/658 (53%), Positives = 473/658 (71%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +I+ + +P +++A Sbjct: 12 FELLSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTVSNLIKEVNKPTLIIA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 72 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+GS Y++ +V L++G + +LL ++ Q++R Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYAKQVVSLRVGMEKPRDQLLKEMIDIQFERN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I E LTG+ + E + I+ Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEILGETEHVSIF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I++EL+ RL L E +LLEAQRLEQR YD+EML G Sbjct: 252 PATHFVTNEDHMEHAIASIQKELEDRLAVLRSENKLLEAQRLEQRTNYDIEMLREMGYTS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESHVT+PQI GMY GD RK L +Y Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQIRGMYNGDRARKQMLVDY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E EQ +I +QIIRPTGL+DP VE Sbjct: 372 GFRLPSALDNRPLRLEEFEEHVNQIVYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVVE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+Y E I+V+Y+HS+VKTLE Sbjct: 431 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDVKTLE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREG+D+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV--IDPILL 738 N + KVI+YAD +T S+Q AIDET+RRR Q +NK+H+I P+++ ++I ++ I + Sbjct: 551 NSDGKVIMYADKMTDSMQRAIDETSRRRSIQEAYNKEHDIEPKTIIKEIRDLIAITKVAE 610 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E T S + +++++ L L K+M AA L+FE AA +RD I LK++ Sbjct: 611 ESGDYTTTSYE----DMTREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664 >gi|315650759|ref|ZP_07903811.1| excision endonuclease subunit UvrB [Eubacterium saburreum DSM 3986] gi|315486966|gb|EFU77296.1| excision endonuclease subunit UvrB [Eubacterium saburreum DSM 3986] Length = 655 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/656 (53%), Positives = 460/656 (70%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+ G + Q LLG TGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEFLPTGDQPQAIEALVNGFKEGNQFQTLLGATGSGKTFTMANVIQKLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 63 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS Y +M+V L+ G ++ +++ L+ QY R Sbjct: 123 SATASLSERKDVIIVASVSCIYGLGSPIDYQEMVVSLRPGMERDRDDVIRKLIDMQYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+FP+ A R FG+++++I E LTG I + I+ Sbjct: 183 DMDFHRGTFRVRGDVLEVFPAASTSTALRFEFFGDEVDKILEIDTLTGNIIAELAHAVIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + TA + I +E + R+ + E +L+EAQR+++R +D+EM+ TG C Sbjct: 243 PASHYVVAPEKMKTATENILKECEERVSFFKSEDKLIEAQRIDERTHFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y +D L+ VDESH+TIPQ+ GMY GD RK TL Y Sbjct: 303 GIENYSRHLTGSAPGEPPYTLIDYFKDDFLIIVDESHITIPQVRGMYAGDRSRKMTLVNY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E E + EQIIRPTGL+DPP+ Sbjct: 363 GFRLPSALDNRPLEFSEFESKIDQMLFVSATPSVYEKEH-EMFRTEQIIRPTGLLDPPIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++ +IL+T LTKRMAEDLTEY+ E IRVRY+HS++ TLE Sbjct: 422 VRPVEGQIDDLIGEVNKEIEKKNKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL KFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAEIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T S++ AIDET RRR Q +NK+H I P ++K+ + D I + Sbjct: 542 NADGHVIMYADNMTDSMKAAIDETYRRRGIQEAYNKEHGITPTTIKKAVR---DLIAISK 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 AA + +ID S+ K + +K L K+M AA L+FE AA +RD++ L++S Sbjct: 599 AADSVSTIDKDVESMDKAEINKLIKELEKKMFKAAAELDFENAALLRDKVSELRAS 654 >gi|300933415|ref|ZP_07148671.1| excinuclease ABC subunit B [Corynebacterium resistens DSM 45100] Length = 707 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/670 (52%), Positives = 481/670 (71%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L + + E+ +L+G TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVISEYQPAGDQPHAIEELAQRLDRGERDVVLMGATGTGKSATAAWLIEKVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V LK+G+ V++ + L LV QY+R Sbjct: 148 SATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVGEEVDRDQFLRLLVDIQYQRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+++I P++ E++A RV FG++I+ + +PLTG IR V+ ++I+ Sbjct: 208 DMSFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDEIDSLFYIHPLTGDVIREVDELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IKEEL+ RL ELE G+LLEAQRL R YDLEM++ G Sbjct: 267 PATHYVAGPERMEKAIAAIKEELEQRLAELENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ + + +SATPG +E+ G VEQ+IRPTGLVDP VE Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAGGEFVEQVIRPTGLVDPKVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ ++I ++ R+L+T LTKRMAEDLT+YL E ++VRYMHS++ TL+ Sbjct: 447 VRPTKGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ +VI+YAD IT+S+Q AIDET RRR KQ+ +NK+H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKITESMQYAIDETERRRAKQIAYNKEHGIDPQPLRKKIADILDQVAELE 626 Query: 737 -----------LLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 L DAA + ID +Q +++ + + + L +QM AA L FE A Sbjct: 627 GKEAAEDVAASLSSDAAVASPGIDQKQAGEMARPQLEKLISDLTEQMKAAARELKFELAG 686 Query: 785 RIRDEIKRLK 794 R+RDEI+ LK Sbjct: 687 RLRDEIQDLK 696 >gi|331082518|ref|ZP_08331643.1| UvrABC system protein B [Lachnospiraceae bacterium 6_1_63FAA] gi|330400496|gb|EGG80126.1| UvrABC system protein B [Lachnospiraceae bacterium 6_1_63FAA] Length = 662 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 472/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A Sbjct: 4 FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+N++ID++R Sbjct: 64 HNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+VSSVSCIYGIGS + Y MI+ L+ G ++ E++ L+ QY R Sbjct: 124 SATSSLSERKDVIIVSSVSCIYGIGSPDDYQNMIISLRPGMEKDRDEVVRELIDIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EIFP+ + A RV FG++I+ I+E LTG+ + I I+ Sbjct: 184 EMDFHRGTFRVRGDVLEIFPADYSETAVRVEFFGDEIDRITEVDILTGEIKSALNHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P + A I+EELK R+ + E +LLEAQR+ +R +D+EML+ TG C Sbjct: 244 PASHYVVPIEKIRKAAVAIEEELKERVDYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L+G PG+PP TL +Y +D L+ +DESH TIPQI GMY GD RK TL +Y Sbjct: 304 GVENYSRHLSGLKPGQPPYTLIDYFGDDFLIIIDESHKTIPQIRGMYAGDQSRKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E + + +QIIRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLNFEEFEDKIDQILFVSATPGEYE-ENHELLRADQIIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++ +IL+T LTKRMAEDLTEY+ E IRVRY+HS++ TLE Sbjct: 423 VRPVEGQIDDLISEVNKEIKKKNKILITTLTKRMAEDLTEYMKELGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S+++AIDET RRR Q ++N++H I P+++K+ + ++I + + Sbjct: 543 NADGRVIMYADVITDSMRIAIDETMRRRALQQKYNEEHGITPKTIKKAVRDLIS--ISKA 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T ++ S+S+K+ + +K ++KQM AA +LNFE AA +RD++ LK + Sbjct: 601 VAETEEKLEKDPESMSRKELENLIKKVQKQMQAAAADLNFEMAASLRDKMLELKKN 656 >gi|166030536|ref|ZP_02233365.1| hypothetical protein DORFOR_00197 [Dorea formicigenerans ATCC 27755] gi|166029698|gb|EDR48455.1| hypothetical protein DORFOR_00197 [Dorea formicigenerans ATCC 27755] Length = 659 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/654 (53%), Positives = 466/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QL++G + Q LLGVTGSGKTFTMA VI + RP +++A Sbjct: 4 FNLVSEYSPTGDQPQAIEQLVQGFKEGNQCQTLLGVTGSGKTFTMANVIAQLNRPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NE+ID++R Sbjct: 64 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNEEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVV+SVSCIYG+G E++ QM+V L+ G ++ E+L L+ QY R Sbjct: 124 SATAALIERRDVIVVASVSCIYGLGEPENFEQMMVSLRPGMEKDRDEVLRQLIDIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IE+ P+ D A RV FG++I+ ISE LTG+ + I I+ Sbjct: 184 DMDFKRGTFRVRGDTIEVVPADRGDTAIRVEFFGDEIDRISEIDMLTGEIKNTLNHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A+K I+ EL+ ++ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVPKERMEKAIKNIEIELEEQVKYFKGEDKLLEAQRIAERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD RK TL +Y Sbjct: 304 GIENYSRHLAGLAPGQPPNTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKRTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +E E+ + + +Q+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLSFEEFESKIDQVLFVSATPGQYE-EEHELLRAQQVIRPTGLLDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+ +IL+T LTKRMAEDLT+Y+ E IRVRY+HS++ TLE Sbjct: 423 VRPVEGQIDDLIGEVKKEIAGKHKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI+ET RRR+ Q+ +N++H I P ++++ + ++I + + Sbjct: 543 NAEGHVIMYADNMTDSMKNAIEETKRRRKIQMAYNEEHGITPTTIQKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T + +D S+S+K+ + + KQM AA LNFE AA +RD++ LK Sbjct: 601 VAATELQMDKDPESMSEKELLKLIADVTKQMKKAAAELNFEAAAELRDKLIELK 654 >gi|295839531|ref|ZP_06826464.1| excinuclease ABC subunit B [Streptomyces sp. SPB74] gi|197696890|gb|EDY43823.1| excinuclease ABC subunit B [Streptomyces sp. SPB74] Length = 718 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/700 (50%), Positives = 478/700 (68%), Gaps = 43/700 (6%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 + + F++ + Y PSGDQP AIA+L K + EK +LLG TG+GK+ T A +IE +QRP Sbjct: 9 RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 68 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++ Sbjct: 69 TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 128 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+GD V++ ELL V Sbjct: 129 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVSLKVGDEVDRDELLRRFVDI 188 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I + + Sbjct: 189 QYARNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 247 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ SHY+ + A+ I+ EL+ RL ELEK+G+LLEAQRL R TYD+EML Sbjct: 248 QVYVFPASHYIAGPERMERAVSGIEAELEQRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 307 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G+C +ENYS + R PG PP TL +Y PED LL +DESHVT+PQI MY GD RK Sbjct: 308 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 367 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL ++GFRLPS +DNRPL++EE+ + +SATPG++EL + G VEQIIRPTGLV Sbjct: 368 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 426 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I VRY+HS+ Sbjct: 427 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 486 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTI Sbjct: 487 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 546 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N + I+PQ +++KI +++ Sbjct: 547 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 606 Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762 I E+ T ++ + + K GKA Sbjct: 607 IAREEVDTESLLGTGYRQAAEGKGAKTPVPALGGKATAEAGKAAKGAKSAKGKAASTPTD 666 Query: 763 --------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ +K Sbjct: 667 RPGAELAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 706 >gi|15893793|ref|NP_347142.1| excinuclease ABC subunit B [Clostridium acetobutylicum ATCC 824] gi|20532291|sp|Q97LQ2|UVRB_CLOAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|15023364|gb|AAK78482.1|AE007565_1 Excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) [Clostridium acetobutylicum ATCC 824] gi|325507916|gb|ADZ19552.1| excinuclease ABC subunit B [Clostridium acetobutylicum EA 2018] Length = 666 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/654 (53%), Positives = 474/654 (72%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA ++ GI + K Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKINSAFKPTGDQPQAIASIVNGIKNNNKWQTLLGVTGSGKTFTMANIIEKVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF++FFP ++VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFRDFFPDSSVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L LV+ QY+R Sbjct: 124 SATSALFERRDVIVVASVSCIYGLGNPEEYKKLSISLRTGMNKDRDEILEKLVEMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTF+V GD+I+IFP+ A RV +FG++I++I EF LTG I+ ++ I+ Sbjct: 184 EINFVRGTFKVKGDTIDIFPAGSTSSAIRVELFGDEIDKIKEFDVLTGNTIKTLKHTVIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + A+K I+ EL+ RL EL E +LLEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSSDKIEEAIKQIEIELEERLRELNSEDKLLEAQRLKQRTNFDIEMMREVGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + GR GEPP TL +Y P+D L+F+DESHVT+PQ+ MY GD RK +L +Y Sbjct: 304 GIENYSRIMDGRQKGEPPKTLIDYFPDDFLMFIDESHVTLPQVKAMYGGDRSRKNSLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+E+ + VSATP ++EL+ + I EQ+IRPTGL+DP +E Sbjct: 364 GFRLPSAYDNRPLKFDEFEEKINQIVFVSATPSNYELDHSEN-IAEQVIRPTGLLDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+Y EI Q G RIL+T LTK+MAEDLT+YL + I+ YMHS++ TLE Sbjct: 423 VRPTKGQIDDLYSEIKNTIQNGFRILVTTLTKKMAEDLTDYLKDLGIKTTYMHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II+D+R G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RMKIIKDVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N S+VI+Y D IT ++ AI ET RRR+ Q+E+N+K+ I P ++K+ + +VI + + Sbjct: 543 NSESRVIMYGDKITDAMGKAISETKRRRKIQIEYNEKNGIKPTTIKKAVRDVIGISEVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T S+D + + K +K K+M AA L FE+AA RD++ LK Sbjct: 603 GKTEYKSMD-EAVKADNKNIDKLIKEFEKEMKEAAKELQFEKAAYFRDKVNELK 655 >gi|295105229|emb|CBL02773.1| Excinuclease ABC subunit B [Faecalibacterium prausnitzii SL3/3] Length = 685 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/654 (53%), Positives = 464/654 (70%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL++G+ ++ Q LLGVTGSGKTFTMA VI RP +V+A Sbjct: 6 FELVSNYAPTGDQPQAIAQLVEGVQRGDRCQTLLGVTGSGKTFTMANVIAQCNRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH Sbjct: 66 HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +G Y M++ L+ G +E+ EL LV QY+R Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCKKLVTLQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +R FRV GD+++I+ +++ ++A RV FG++I+ I+EF PLTG K V+ + I+ Sbjct: 186 DVNFVRNKFRVHGDTVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGSKQNVVKHVAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ A++ I+ E ++ + EG+L+EAQR+ QR YD+EML G C+ Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDIEMLNEVGICK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR PG P TL +Y PED LLFVDESHVT+PQ+ MY GD+ RK TL EY Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE I VSATPG +E + +Q+IRPTGL+DP + Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGEYERRNSSQ-VAQQVIRPTGLLDPVIS 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV D+ EIN Q+ R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E Sbjct: 425 VRPVEGQVVDLLGEINARIQRQERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLRLG DV+VGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q+ +N++H I P+++ + + D I + D Sbjct: 545 NAEGMVIMYADVVTDSMECAITETERRRAIQMAYNEEHGIVPKTI---VKAIADSIEISD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A N + ++ + K + +A ++ L ++M AA L FE AA +RD+I RL+ Sbjct: 602 KA-ENAKRNTRR--MGKMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652 >gi|310778323|ref|YP_003966656.1| excinuclease ABC, B subunit [Ilyobacter polytropus DSM 2926] gi|309747646|gb|ADO82308.1| excinuclease ABC, B subunit [Ilyobacter polytropus DSM 2926] Length = 661 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/658 (52%), Positives = 488/658 (74%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI ++ + I K Q+LLGVTGSGKTFT+A +I+ RPAI+MA Sbjct: 2 FKLHSNYKPTGDQPEAIKKISENIKENVKDQVLLGVTGSGKTFTVANIIKDTGRPAIIMA 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++R+ Sbjct: 62 PNKTLAAQLYSEYKSFFPENAVEYFVSYYDYYQPEAYIPSTDTFIEKDSSINDEIDKLRN 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ R D I+V+SVS IYG+GS E+Y +M + + + +E+K+ L LV +Y+R Sbjct: 122 AATAALINRRDVIIVASVSAIYGLGSPETYKKMTIPIDLKTGIERKKFLEKLVSLRYERN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKI 379 DI RG FR+ GD ++I+PS++E +R+ +G+D+E ISE LTG+K+R+ +E I I Sbjct: 182 DIAFERGKFRIKGDVVDIYPSYME-TGYRLEFWGDDLESISEINTLTGKKVRSGLERISI 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 +HYVT + ++ IKE+LK+++ + E EG+LLEAQR++QR YDLEM+ G C Sbjct: 241 MPATHYVTEENEIERIIEDIKEDLKIQIKKFESEGKLLEAQRIKQRTEYDLEMIREVGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + IENYSRYL G+ PGE P TL EY P+D L+F+DESH+ +PQI GMY+GD RK TL Sbjct: 301 KGIENYSRYLAGKEPGESPHTLLEYFPKDFLIFIDESHIAVPQIRGMYKGDRSRKETLVA 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPLRFEE+ + T+ VSATPG +E++ +G + EQ++RPTG+++P + Sbjct: 361 NGFRLPSALDNRPLRFEEFREIANQTVFVSATPGDYEMDVSKGQVAEQLVRPTGILEPLI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R QV+D+ +E+ + +++ R+L+T LTK+MAE+LTEY ++ +YMHS++ TL Sbjct: 421 DVRPTANQVDDLLEEVRIRSEKKQRVLVTTLTKKMAEELTEYYIGFGVKAKYMHSDIDTL 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEIIR LR G+FDVLVGINLLREGLDIPE LVA+L+ADKEGFLRS+ SLIQT+GRAA Sbjct: 481 ERIEIIRGLRRGEFDVLVGINLLREGLDIPEVSLVAVLEADKEGFLRSRRSLIQTMGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ KVILY D +T S++ AI+ET RRR+ Q E+NK +NI+P++V I E+ + +L Sbjct: 541 RNIEGKVILYGDVMTGSMKEAIEETKRRRKVQKEYNKTYNIDPKTV---IREISEEVLNF 597 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D S + +++ SKK + + L+K++ + ++ L+FE+A RDE+ +L+ Sbjct: 598 DYGVDIDSYEKEKVKRVFTSKKDIEKEIGKLKKEIKILSEELDFEKAIIKRDEMIKLQ 655 >gi|227501808|ref|ZP_03931857.1| excision endonuclease subunit B [Corynebacterium accolens ATCC 49725] gi|227077833|gb|EEI15796.1| excision endonuclease subunit B [Corynebacterium accolens ATCC 49725] Length = 697 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/660 (53%), Positives = 475/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQPAAI +L + ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FQVVSDYEPAGDQPAAIKELDERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT LL R D +VVSSVSCIYG+G+ +SY V + + + +++ L LV QY+R Sbjct: 148 SATSGLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIIAVDEELDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFRV GD+++I P++ E+ A R+ FG+DI+ + +P+TG I V+ ++I+ Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEQVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVADIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GMY GD RK L E+ Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMYEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDFEMTSSGGEFVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DE+ R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIDEVRGRIASKERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRQGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 NV+ +VI+YAD IT S+Q AIDET RRREKQ+ +NK+H ++PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKITDSMQEAIDETERRREKQIAYNKEHGVDPQPLRKKIADILDQVYENN 626 Query: 738 LEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+AA ++ S ++L S++ + +A + L+ QM AA L FE A R+RDEI LK Sbjct: 627 GEEAAESDPSAVVEKLDVSSMATDEVEALINDLQAQMGAAARELKFELAGRLRDEIADLK 686 >gi|300173722|ref|YP_003772888.1| excinuclease ABC subunit B [Leuconostoc gasicomitatum LMG 18811] gi|299888101|emb|CBL92069.1| excinuclease ABC, B subunit [Leuconostoc gasicomitatum LMG 18811] Length = 668 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/660 (51%), Positives = 479/660 (72%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI+QL+KGI++ K Q+LLG TG+GKTFT++ V++ +++P +V++ Sbjct: 10 FEVVSQYQPTGDQPQAISQLVKGINAGVKEQILLGATGTGKTFTISNVVKTVRKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+ Sbjct: 70 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVS I+G+G Y + ++ L++G+ + +L+ L+ Q+ R Sbjct: 130 SATSSLLSRKDVIVVASVSSIFGLGDPHQYEEHVINLRVGNEYGRDQLMRDLIDVQFTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ +++A RV FG++I+ I + LTG+ + + + IY Sbjct: 190 DIDFHRGTFRVRGDVMEIFPASEDELALRVEFFGDEIDRIRDINSLTGETLAERDFVSIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T ++TA+ IK+E+ ++ E EG+L+EAQR++QR YDL MLE G Sbjct: 250 PAKHFMTDDDQMSTALAGIKQEMTEQVSRFETEGKLIEAQRIKQRTEYDLAMLEEMGFVG 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GRNPGEPP TL ++ P+D L+ DESHVT+PQI GMY GD RK TL Y Sbjct: 310 GIENYSRWMDGRNPGEPPFTLLDFFPDDFLIVADESHVTMPQIRGMYNGDRARKETLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +ELE+ + +QIIRPTGL+DP + Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYELERVTDNHVAQQIIRPTGLLDPEI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN +++ R+ +T LTKRMAEDLT+YL I+V Y+HS++KTL Sbjct: 430 EVRPVMGQIDDLVGEINARSEKNERVFITTLTKRMAEDLTDYLKNVGIKVAYLHSDIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EI+RDLRLGK+DVL+GINLLREG+D+PE LVAILDADKEGFLR+ SLIQTIGRAA Sbjct: 490 ERTEILRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILL 738 RN N VI+YAD +T+S+Q AIDET RRRE Q+++N ++ I P ++K++I ++I + Sbjct: 550 RNANGHVIMYADKVTRSMQEAIDETARRREVQMQYNAENGITPTTIKKEIRDLISVRSVS 609 Query: 739 EDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D TT ID Q++ L + + K + ++ QM AA +L+FEEAA++RD + LK+ Sbjct: 610 TDGKTT---IDLTQVAFKDLPQDEQKNIIANMEGQMKAAAKSLDFEEAAQLRDSVMTLKA 666 >gi|255657365|ref|ZP_05402774.1| excinuclease ABC subunit B [Clostridium difficile QCD-23m63] Length = 656 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/655 (53%), Positives = 481/655 (73%), Gaps = 7/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++D+ P+GDQP AI ++ I+ EK LLGVTGSGKTFTMA +I+ +++P ++MA Sbjct: 3 FKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D I++SSVSCIYG+G + Y ++++ ++ G ++ +++ L++ QY+R Sbjct: 123 SATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A R+ FG++++ I+E +TG+ + + I+ Sbjct: 183 DINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNHVVIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A+ I++EL+ ++ ++ RLLEAQR+EQR YD+EML+ G CQ Sbjct: 243 PASHYVTTPERIEKAIIEIEDELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEIGFCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD RK +L E Sbjct: 303 GIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTSLIEN 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +E++ + I EQIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLDPIVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT YL E I+V+Y+HS++ TLE Sbjct: 422 VRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDIVTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS+T+LIQTIGRAAR Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N N +VI+YAD IT S+Q AIDET RRR+ Q +N++HNI P+++++ I + I+ + E Sbjct: 542 NENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNITPKTIQKNIRDSIEATKVAE 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + IS D K + +A++ L+ +M AA NL FE AA +RD++K+L+ Sbjct: 602 EEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 651 >gi|289435750|ref|YP_003465622.1| excinuclease ABC, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171994|emb|CBH28540.1| excinuclease ABC, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313636365|gb|EFS02146.1| excinuclease ABC subunit B [Listeria seeligeri FSL S4-171] Length = 658 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/656 (54%), Positives = 470/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPRAIEQLVSGLRKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 125 SATASLFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ RV FG++IE I E LTG+ I E + I+ Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRVEFFGDEIERIREVDALTGEIIGEREHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ IK EL+ RL L + +LLEAQRLEQR YDLEM+E G C Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEERLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLE Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P ++K++I +I Sbjct: 544 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPMTIKKEIRGIIAAT---S 600 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA +I LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 601 AADEREAIKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656 >gi|255327552|ref|ZP_05368619.1| excinuclease ABC subunit B [Rothia mucilaginosa ATCC 25296] gi|255295446|gb|EET74796.1| excinuclease ABC subunit B [Rothia mucilaginosa ATCC 25296] Length = 722 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/699 (50%), Positives = 480/699 (68%), Gaps = 47/699 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA+L + + + EK +L+G TG+GK+ T A +IEA+QRP +V+ Sbjct: 14 FEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAWLIEAVQRPTLVLV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VSCIYG+G+ E Y + +V L+ G+ +++ ELL V QY R Sbjct: 134 SATNSLLTRRDVVVVATVSCIYGLGTPEEYIEQMVTLRRGEEIDRDELLRQFVAMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A RV FG++IE I +PLTG+ IR E + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EENAIRVEFFGDEIEAIYTLHPLTGEVIREEEEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL LE +G+LLEAQRL R TYDLEM+E G C Sbjct: 253 PASHYVAGPERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P L +Y P+D LL +DESHVT+PQ+ MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ TI +SATPG +EL Q G VEQIIRPTGL+DP + Sbjct: 373 GFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLIDPEIV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +EI + ++ R+L+T LTKRMAEDLTEYL + ++V+Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKVQYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+++AIDET RRRE Q +N+ H I+PQ +++KI ++ D + E+ Sbjct: 552 NVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNRAHGIDPQPLRKKIADITDVLAREE 611 Query: 741 AATTNI-------SIDAQQLSLSKKKGKAH------------------------------ 763 T + A+ +S K G A Sbjct: 612 EDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAEARVRADGLAAA 671 Query: 764 --------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +QM +AA+NL FE AAR+RDE+ LK Sbjct: 672 PAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLK 710 >gi|160943190|ref|ZP_02090426.1| hypothetical protein FAEPRAM212_00676 [Faecalibacterium prausnitzii M21/2] gi|158445429|gb|EDP22432.1| hypothetical protein FAEPRAM212_00676 [Faecalibacterium prausnitzii M21/2] Length = 685 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/654 (53%), Positives = 464/654 (70%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL++G+ ++ Q LLGVTGSGKTFTMA VI RP +V+A Sbjct: 6 FELVSNYAPTGDQPQAIAQLVEGVQRGDRCQTLLGVTGSGKTFTMANVIAQCNRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH Sbjct: 66 HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +G Y M++ L+ G +E+ EL LV QY+R Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCKKLVTLQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +R FRV GD+++I+ +++ ++A RV FG++I+ I+EF PLTG K V+ + I+ Sbjct: 186 DVNFVRNKFRVHGDTVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGSKQNVVKHVAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ A++ I+ E ++ + EG+L+EAQR+ QR YD+EML G C+ Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDIEMLNEVGICK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR PG P TL +Y PED LLFVDESHVT+PQ+ MY GD+ RK TL EY Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE I VSATPG +E + +Q+IRPTGL+DP + Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGEYERRNSSQ-VAQQVIRPTGLLDPVIS 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV D+ EIN Q+ R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E Sbjct: 425 VRPVEGQVVDLLGEINARIQRQERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLRLG DV+VGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q+ +N++H I P+++ + + D I + D Sbjct: 545 NAEGMVIMYADVVTDSMERAITETERRRAIQMAYNEEHGIVPKTI---VKAIADSIEISD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A N + ++ + K + +A ++ L ++M AA L FE AA +RD+I RL+ Sbjct: 602 KA-ENAKRNTRR--MGKMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652 >gi|223937920|ref|ZP_03629819.1| excinuclease ABC, B subunit [bacterium Ellin514] gi|223893321|gb|EEF59783.1| excinuclease ABC, B subunit [bacterium Ellin514] Length = 682 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/661 (53%), Positives = 465/661 (70%), Gaps = 15/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L +G+ S K Q LLGVTGSGKTFT+A VI+ + +P +V++ Sbjct: 2 FDLVSSYPPAGDQPQAIAKLTEGLLSGAKHQTLLGVTGSGKTFTVANVIKNINKPTLVIS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK+FFP+NAVEYFVSY+DYYQPEAY+PRTDT++EK+SS+NE+I+RMR Sbjct: 62 HNKTLAAQLYAEFKSFFPNNAVEYFVSYFDYYQPEAYIPRTDTFVEKDSSVNEEIERMRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SL R D +VV+SVSCIYGIGS E Y +I+ + +G + +++ L+ LV QY R Sbjct: 122 STMSSLFSRQDVVVVASVSCIYGIGSKEDYEALIIPICVGQQITREQFLNRLVDLQYTRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD++E+ P+ ED R+ FG +IE I+ F PLTG K+ + T +Y Sbjct: 182 DIEFTRGQFRVRGDTVELCPAGRED-GLRIEFFGEEIERITRFEPLTGHKLETLNTAVVY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VT + A+ I+EEL R+ EK G+LLEAQR++QR YDLEM+E G C Sbjct: 241 PAKQFVTTADKMKPAILSIREELGDRIAWFEKHGKLLEAQRIKQRTEYDLEMMEEMGFCS 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R++ GR PG P TLF++ P+D LL +DESH TIPQI GMY GD RK L EY Sbjct: 301 GIENYTRHINGRAPGSRPTTLFDFFPKDHLLVIDESHATIPQIGGMYAGDRSRKTVLVEY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ ++ T+ VSATP E+E QG + EQIIRPTGLVDP + Sbjct: 361 GFRLPSALDNRPLNFDEFQHMQGPTLYVSATPSPREIEWSQGRVAEQIIRPTGLVDPTIT 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +E RIL+T LTKR AE+LT+YL I VRY+HSE+ +E Sbjct: 421 VKPLQGQIDDLIEEARKRVDSKERILVTTLTKRTAEELTDYLRNIGINVRYLHSEIDAIE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R LR G+FDVLVGINLLREGLD+PE LVAILDADKEG+LRS TSLIQT GRAAR Sbjct: 481 RVEILRGLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSVTSLIQTAGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++N +VILYAD +T+SIQ + + RRE+QL +NK+HNI P+SV + E+ Sbjct: 541 HLNGEVILYADVMTQSIQKFLAVSKFRRERQLAYNKEHNITPKSVSRAV---------EE 591 Query: 741 AATTNISIDAQQLSLSKKKG-----KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +TN Q S+ K+ G +K L ++M AA+NL FE+AA +RD+I+ LK Sbjct: 592 SLSTNKEFKDQANSMLKESGVDFDVTETIKELEEEMLAAANNLEFEKAALMRDQIRELKR 651 Query: 796 S 796 S Sbjct: 652 S 652 >gi|229014325|ref|ZP_04171444.1| UvrABC system protein B [Bacillus mycoides DSM 2048] gi|229063814|ref|ZP_04200118.1| UvrABC system protein B [Bacillus cereus AH603] gi|229135970|ref|ZP_04264731.1| UvrABC system protein B [Bacillus cereus BDRD-ST196] gi|229169869|ref|ZP_04297565.1| UvrABC system protein B [Bacillus cereus AH621] gi|228613583|gb|EEK70712.1| UvrABC system protein B [Bacillus cereus AH621] gi|228647512|gb|EEL03586.1| UvrABC system protein B [Bacillus cereus BDRD-ST196] gi|228716451|gb|EEL68155.1| UvrABC system protein B [Bacillus cereus AH603] gi|228746925|gb|EEL96809.1| UvrABC system protein B [Bacillus mycoides DSM 2048] Length = 658 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 476/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPKAI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI+ + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N+KH I P+++++ + +VI Sbjct: 544 NANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATTA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T I ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 602 AEDTEIYEATPAKKMTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|258645489|ref|ZP_05732958.1| excinuclease ABC subunit B [Dialister invisus DSM 15470] gi|260402842|gb|EEW96389.1| excinuclease ABC subunit B [Dialister invisus DSM 15470] Length = 702 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/657 (52%), Positives = 468/657 (71%), Gaps = 1/657 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F++ + P GDQP A+ L G+ Q+LLG TG+GKTFTMAKVIE MQRP + Sbjct: 14 MTPFRLAAPFQPMGDQPEAVKSLTDGLRDGHWAQVLLGATGTGKTFTMAKVIEEMQRPTL 73 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 +++PNK LAAQ SEFK+FFP NAV YFVSYYDY+QPE+Y+P+TDTYIEK+SS NE+IDR Sbjct: 74 IISPNKTLAAQTASEFKDFFPDNAVYYFVSYYDYFQPESYIPQTDTYIEKDSSRNEEIDR 133 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSAT +L ER D I+V+SVSCIYG+G E YS + + L+ G+ + + ++L LV QY Sbjct: 134 LRHSATMALFERRDVIIVASVSCIYGLGDPEDYSTLGLSLRPGEEITRDQILLRLVDMQY 193 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ R TFRV GD+I++FP+ + A R+ MFG++IE + EF LTG + + I Sbjct: 194 LRNDLNFTRDTFRVRGDTIDVFPASSNNTAVRIEMFGDEIESLYEFDVLTGATVAERDHI 253 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I+ SHYVT L A+ IK EL+ RL EL ++ R+LEAQRL QR YDLEM++ G Sbjct: 254 GIFPASHYVTTSGKLKNAIAKIKVELEERLKELREQDRILEAQRLMQRTNYDLEMMQEVG 313 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+++ R PG+PP TL +Y P+D ++ +DESH+T+PQ+ MY GD RK TL Sbjct: 314 YCSGIENYSRHMSDRRPGDPPYTLLDYFPDDYMIMIDESHITVPQLHAMYNGDQSRKHTL 373 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL FEE+ I VSATPG +E+ Q + EQIIRPTGL+DP Sbjct: 374 VDYGFRLPSALDNRPLTFEEFTDRINQIIYVSATPGRYEM-SVQTNMAEQIIRPTGLLDP 432 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE+R Q++D+ EI+ R+L+T LTK+MAEDLT++L E ++VRY+HS+V Sbjct: 433 SVEVRPIEGQMDDLLGEIHKREAVNERVLITTLTKKMAEDLTDFLNEAGVKVRYLHSDVA 492 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ER EIIRDLR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLR++TS+IQ IGR Sbjct: 493 TIERAEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRNETSMIQVIGR 552 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN + VI+YAD +TKS++ AI+ET RRR+ Q +N KH+I P+++++K+ ++I+ Sbjct: 553 AARNAHGHVIMYADRMTKSMKYAIEETNRRRKIQEAYNTKHHIVPKTIRKKVKDLIELTK 612 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ T S D +LS ++ +K+ + M AA + FEEAA RD + L+ Sbjct: 613 ISESTETYGSGDQSVENLSDEELYNRMKNSERNMKRAAKAMEFEEAALWRDRLAGLR 669 >gi|168705485|ref|ZP_02737762.1| excinuclease ABC subunit B [Gemmata obscuriglobus UQM 2246] Length = 694 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/665 (52%), Positives = 477/665 (71%), Gaps = 22/665 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AI QL +G + +KVQ+LLG TG+GKTFT + VI +P +V+A Sbjct: 5 FQITSDYAPAGDQPKAIEQLTQGFANGKKVQVLLGATGTGKTFTASNVIARANKPTLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FF +NAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE IDR+R Sbjct: 65 HNKTLAAQLYKEFKGFFKNNAVHYFVSYYDYYQPEAYIPQRDIYIEKDSSINENIDRLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ R D I+V+SVSCIYG+GS Y +M+V ++ G+++++ +L L+ QYKR Sbjct: 125 AATSALVSREDVIIVASVSCIYGLGSPSDYKRMMVYVRKGETLDRDNMLLRLIDIQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGT RV GD+I+++P+ E+ A+R+ +FG+D+E +S +P++G+ IR ++ + IY Sbjct: 185 DVAFERGTVRVRGDTIDVWPAS-EEFAYRIELFGDDVETLSVIHPVSGETIRPLDDLYIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP + A+K I+EEL RL + + EG+LLE +RL+ R YDL+ML G C Sbjct: 244 PAKHFVTPEERVQAAIKGIEEELNQRLEQFKTEGKLLEMERLKARCRYDLDMLREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+ +GR PGE P TL ++ PED LL VDESHVT+PQ+ GMY GD RK TL + Sbjct: 304 GIENYARWFSGRAPGEAPYTLIDFFPEDFLLVVDESHVTLPQVRGMYFGDRSRKETLVAH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + +SATPG +ELE+ G +VEQ+IRPTGLVDP + Sbjct: 364 GFRLPSALDNRPLKFDEFEKRMTQCLCLSATPGPYELEKVGGEVVEQVIRPTGLVDPVIH 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ AR QV+D+ E+ A +G R L+TVLTKRMAEDLT Y + +R +++HSE+ +E Sbjct: 424 VKPARGQVKDLEAEVRTRAAKGERALVTVLTKRMAEDLTTYFRDAGMRCKWLHSELDAIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+++R+LR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SLIQT+GRAAR Sbjct: 484 RIQVLRELREGQFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN++VILYAD +T S+ A++ET RRRE QL +N +H I PQ+VK I I ED Sbjct: 544 NVNAEVILYADVVTDSMSRAMNETNRRREIQLAYNAEHGITPQTVKTAIKNEI-----ED 598 Query: 741 AATTNISIDAQQLSLSKKKGKA----------HLKSLRKQMHLAADNLNFEEAARIRDEI 790 I+A Q++ + G + +++SL ++M AA L+FE A +RD+I Sbjct: 599 ------EIEAHQMAQAAATGSSAAAEDYVTVEYVQSLYEEMLEAAKTLDFERAQALRDQI 652 Query: 791 KRLKS 795 RL++ Sbjct: 653 VRLET 657 >gi|33862344|ref|NP_893904.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9313] gi|81834846|sp|Q7TV80|UVRB_PROMM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33640457|emb|CAE20246.1| excinuclease ABC, subunit B [Prochlorococcus marinus str. MIT 9313] Length = 679 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/670 (53%), Positives = 470/670 (70%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + ++ Y P GDQP AIA+L++G++ ++ Q LLG TG+GKTFT+A +I RPA+V+A Sbjct: 4 YHLKAPYSPKGDQPTAIARLVEGVNQGQRYQTLLGATGTGKTFTIANLIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ FFP N+VEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH Sbjct: 64 HNKTLAAQLCNEFREFFPDNSVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ERND IVV+S+SCIYG+G Y + V+ K+G+++ + L LV+ QY R Sbjct: 124 SATRSLFERNDVIVVASISCIYGLGIPSEYLKAAVKFKVGETLNIRSALRELVENQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++E I IY Sbjct: 184 DIDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYLDPTTGEILQSLEAINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ LN A++ I++EL+ RL L ++G+LLEAQRLEQR TYDLEML G C Sbjct: 243 PAKHFVTPKERLNVAVQAIRDELRGRLQFLNEQGKLLEAQRLEQRTTYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR+ G PP L +Y PED LL VDESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLAGRSAGTPPECLIDYFPEDWLLVVDESHVTCSQLKAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ VSATPG WEL+Q G + EQ+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKSEEFWSKARQTVFVSATPGDWELKQSDGHLAEQVIRPTGVLDPLVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI + A++ R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E Sbjct: 423 VRPTQGQVDDLLAEIRIRAEKQERVLITTLTKRMAEDLTDYLAENDVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LV ILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V+ +LYAD +T S+ AI ET RRRE Q +N+ + I P+ ++ I L Sbjct: 543 HVDGMALLYADNLTDSMSRAISETERRREIQKAYNELNGIVPRPAGKRASNSILSFLELS 602 Query: 738 ------LEDAATTNI---SIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 +DA I ++DA Q L+ + L +M AA NLNFEEAA Sbjct: 603 RRLQTDGKDADLVQITGRAVDALDSDQDAGLALDALPELIDQLETKMKEAAKNLNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+ + Sbjct: 663 SLRDRIKKFR 672 >gi|326382689|ref|ZP_08204380.1| excinuclease ABC subunit B [Gordonia neofelifaecis NRRL B-59395] gi|326198808|gb|EGD55991.1| excinuclease ABC subunit B [Gordonia neofelifaecis NRRL B-59395] Length = 717 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/688 (50%), Positives = 481/688 (69%), Gaps = 28/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIA L + +++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSEYEPAGDQPTAIADLERRLNTGERDIVLLGATGTGKSATTAWLIEKVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL R D +VV+SVSCIYG+G+ +SY V+L +G ++++ LL LV QY R Sbjct: 148 AATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELSVGQTIDRDALLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD++EI PS+ E++A R+ FG++++ + +PLTG +R V++++I+ Sbjct: 208 DVSFTRGGFRVRGDTVEIIPSY-EELAVRIEFFGDEVDSLYYLHPLTGDVVRKVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + AM+ I++EL+ RL +LE +G+LLEAQRL R TYDLEM+ G C Sbjct: 267 PATHYVAGPERMAVAMESIEKELEERLADLEAKGKLLEAQRLRMRTTYDLEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y P+D LL +DESHVT+PQI MY GD RK L EY Sbjct: 327 GIENYSRHIDGRGPGTAPATLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL ++E+ T+ +SATPG++EL Q G VEQ+IRPTGL+DP + Sbjct: 387 GFRLPSAVDNRPLTWDEFVDRVGQTVYLSATPGAYELGQSGGEFVEQVIRPTGLLDPQIV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ RIL+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLVHEIRERTERDERILVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AI+ET RRR KQ+ +N++ ++PQ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMANAIEETDRRRAKQIAYNEEKGVDPQPLRKKIADILDQVYAEA 626 Query: 741 AATTNISIDAQQLSLSKK-KGKAH------------------------LKSLRKQMHLAA 775 + I + S ++ +G+ ++ L QM AA Sbjct: 627 DDSVEIGGSGRNASRGRRAQGEVSKVASSGVIENRDTSGMPRAELADLVQQLTDQMMNAA 686 Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803 +L FE AAR+RDEI LK +G+D Sbjct: 687 RDLQFELAARLRDEIADLKKE--LRGMD 712 >gi|229175835|ref|ZP_04303333.1| UvrABC system protein B [Bacillus cereus MM3] gi|228607568|gb|EEK64892.1| UvrABC system protein B [Bacillus cereus MM3] Length = 658 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLIDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEGKTNQVIYVSATPGPYELEQAPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +NK+H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T ++ A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEAVPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|294501793|ref|YP_003565493.1| excinuclease ABC subunit B [Bacillus megaterium QM B1551] gi|295707143|ref|YP_003600218.1| excinuclease ABC subunit B [Bacillus megaterium DSM 319] gi|28971417|emb|CAD70605.1| excinuclease ABC, subunit B [Bacillus megaterium] gi|294351730|gb|ADE72059.1| excinuclease ABC, B subunit [Bacillus megaterium QM B1551] gi|294804802|gb|ADF41868.1| excinuclease ABC, B subunit [Bacillus megaterium DSM 319] Length = 659 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/657 (55%), Positives = 478/657 (72%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +++KGI ++ Q+LLG TG+GKTFTM+ VI+ + +P ++MA Sbjct: 5 FELVSPYQPQGDQPKAIEKIVKGIKEGKQHQVLLGATGTGKTFTMSNVIKEINKPTLIMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y +M+V L++G E+ +LL +LV QY+R Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYKEMVVSLRVGMEKERNQLLRTLVDVQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP ++ RV FG++I+ I E LTG+ I + E + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPVSRDEHCIRVEFFGDEIDRIREVDALTGEIIGDREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L +L++ G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMRVAIQNIEKELEEQLEKLKEAGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL ++ PED LL VDESHVTIPQ+ GMY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDFFPEDFLLVVDESHVTIPQVRGMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATPG +ELE+ +I EQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFDEFEQHINQIVHVSATPGPYELEKAPDVI-EQIIRPTGLLDPNIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R+L+T LTK+M+EDLT YL E I+V+Y+HSEVKTLE Sbjct: 424 VRPIEGQIDDLIGEIHDRIKRNERVLVTTLTKKMSEDLTNYLKEIGIKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRELRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N N VI+YAD IT S+ +AI+ET RRR Q +N++H I P ++++++ I ++ E Sbjct: 544 NANGHVIMYADRITNSMDIAINETKRRRSIQEAYNEEHGITPTTIQKEVRGSIRATVVAE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D T +A KK KA L + + ++M AA LNFE AA +RD I LK+ Sbjct: 604 DTETYE---EAPAFDKLNKKEKAKLVEEMEQEMKEAAKALNFERAAELRDLILELKA 657 >gi|282862026|ref|ZP_06271089.1| excinuclease ABC, B subunit [Streptomyces sp. ACTE] gi|282563051|gb|EFB68590.1| excinuclease ABC, B subunit [Streptomyces sp. ACTE] Length = 712 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/699 (50%), Positives = 487/699 (69%), Gaps = 37/699 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERSVAPFEVVSPYQPSGDQPAAIAELDRRIRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +VQLK+GD +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V+ QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I ++ ++ SHYV + A+ I+ EL+ RL ELEK+G++LEAQRL R TYD+ Sbjct: 243 ISEDSSLHVFPASHYVAGPERMEKAIGGIERELEQRLAELEKQGKMLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C +ENYS + R+PG P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGTCSGVENYSMHFDDRSPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +E+ + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFLKRIDQTVYLSATPGKYEMSRGDG-YVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADK+GFLRS TS Sbjct: 482 YLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T ++ AIDET RRREKQ+ +N + ++PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADQVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNI----------------SIDAQQL----SLSKKKGKAH------- 763 +++ I E+ T + ++ + + + +++K K Sbjct: 602 DIVASIAREEVDTEQLLGTGYRQTKGAKTPVPTLGGKTVPGGGATAREKAKGEPVVATDR 661 Query: 764 --------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ LK Sbjct: 662 PAAELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELK 700 >gi|221633527|ref|YP_002522752.1| excinuclease ABC subunit B [Thermomicrobium roseum DSM 5159] gi|221157243|gb|ACM06370.1| excinuclease ABC, B subunit [Thermomicrobium roseum DSM 5159] Length = 668 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/660 (54%), Positives = 476/660 (72%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TD+ P+GDQP AI QL++G+ + Q LLG TG+GKTFTMA VI QRP +V+A Sbjct: 4 FELVTDFQPTGDQPQAIEQLVEGLQRGYRHQTLLGATGTGKTFTMACVIARWQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEKE+ IN++IDR+R Sbjct: 64 PNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYIPQTDTYIEKETEINDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR++ R D I+V+SVSCIYGIGS E + + I+ L+ G V + ++L LV QY R Sbjct: 124 AATRAVRTRRDVIIVASVSCIYGIGSPEEWDKSILALRRGQVVRRDKILRHLVDLQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++RGTFR GD IE+FP++ E+ A R+ ++G+++E I EF PLTG+ + E ++I+ Sbjct: 184 DMTLVRGTFRARGDLIEVFPAY-EEFAVRIELWGDEVERIVEFDPLTGEILATREVMEIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT L A++ I+ EL+ RL EL +G+LLEAQRLEQR YD+EML G C Sbjct: 243 PAKHWVTSGERLEAAIRSIEAELEERLAELRAQGKLLEAQRLEQRTRYDIEMLREVGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPP TL +Y P+D L+F+DESH+ IPQ+ GMY GD RK L EY Sbjct: 303 GIENYSRHLSGRKPGEPPWTLLDYFPDDYLMFIDESHLAIPQVRGMYHGDRSRKEILVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG WE E Q IVEQ+IRPTG++DP + Sbjct: 363 GFRLPSARDNRPLTFEEFLERINQVIYVSATPGPWEREVSQQ-IVEQVIRPTGILDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI +G R L+T LTK+MAEDL +YL E IR Y+HSE+ T+E Sbjct: 422 VRPTKGQIDDLLHEIRQRVARGERALVTTLTKKMAEDLADYLKEIGIRTHYLHSEIDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+++LIQ IGRAAR Sbjct: 482 RVEILRDLRLGIYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSESALIQMIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 +VN VI+YADTIT S+Q AI+ET RRR+ Q+ +N++H I P+S+ +++ ++ D I Sbjct: 542 HVNGHVIMYADTITSSMQKAIEETYRRRQIQMAYNQEHGIEPRSIVKQVRDLTDRIRQAA 601 Query: 739 EDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+ A ++ L+ + ++ L +QM AA L FE+AA +RD+I L+ Sbjct: 602 EERAPYEVAAPVPHAGAIGELAPDELARLIRDLERQMKEAAKQLEFEKAALLRDQIFELR 661 >gi|294668260|ref|ZP_06733365.1| hypothetical protein NEIELOOT_00171 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309779|gb|EFE51022.1| hypothetical protein NEIELOOT_00171 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 615 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/588 (57%), Positives = 443/588 (75%), Gaps = 1/588 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 11 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 71 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G + V ++ Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ +E R +E QR+EQR +DLEML G C+ Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P TI VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR TQV+D+ EIN Q+G R+L+T LTKRMAE LT+Y E I+VRY+HS++ T+E Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 NVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K K Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKNK 597 >gi|49481649|ref|YP_039154.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81828140|sp|Q6HBC2|UVRB_BACHK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|49333205|gb|AAT63851.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 658 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|291549964|emb|CBL26226.1| excinuclease ABC, B subunit [Ruminococcus torques L2-14] Length = 661 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/654 (53%), Positives = 473/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y+P+GDQP AI +L++G + Q LLGVTGSGKTFTMA VI+ M +P +++A Sbjct: 4 FELVSQYNPTGDQPQAIKELVEGFKEGNQCQTLLGVTGSGKTFTMANVIQQMNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++R Sbjct: 64 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D I+V+SVSCIYG+G+ Y M+V L+ G ++ E+++ L++ QY R Sbjct: 124 SATMSLMERRDVIIVASVSCIYGLGNPVDYQNMVVSLRPGMIKDRDEVMAKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EI P++ D A RV FG++I+ ISE LTG+ ++ + I+ Sbjct: 184 DMDFHRGTFRVRGDVLEIIPAYESDTAIRVEFFGDEIDRISEIDILTGEVKDELKHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV R + A+ I+EEL+ R+ E ++ +LLEAQR+ +R +D+EML+ TG C Sbjct: 244 PASHYVVDRENIKRAVADIEEELEERVKEFKRNDKLLEAQRIAERTNFDIEMLKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD RK TL +Y Sbjct: 304 GIENYSRHLAGLRPGQAPYTLIDYFPDDFIMMIDESHKTIPQIGGMYHGDQSRKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATPG +E + + + EQ+IRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLNFDEFESKINQVMFVSATPGEYE-KNHELLRAEQVIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLIGEVNKEISKKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S+QLAIDET RRRE Q+ +N++H I P+++++ + ++I + + Sbjct: 543 NAEGHVIMYADKITESMQLAIDETQRRREIQMRYNEEHGITPKTIQKSVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ S+S+K+ + + L KQM AA LNFE AA +RD++ LK Sbjct: 601 VAAEEMRLEKDPESMSQKELEKLIADLTKQMKKAAAELNFEAAAELRDKLVELK 654 >gi|318056345|ref|ZP_07975068.1| excinuclease ABC subunit B [Streptomyces sp. SA3_actG] gi|318075155|ref|ZP_07982487.1| excinuclease ABC subunit B [Streptomyces sp. SA3_actF] Length = 717 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/699 (50%), Positives = 480/699 (68%), Gaps = 42/699 (6%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 + + F++ + Y PSGDQP AIA+L K + EK +LLG TG+GK+ T A +IE +QRP Sbjct: 9 RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 68 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++ Sbjct: 69 TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 128 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+GD +++ ELL V Sbjct: 129 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDELLRRFVDI 188 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I + + Sbjct: 189 QYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 247 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ SHY+ + A+ I++EL++RL ELEK+G+LLEAQRL R TYD+EML Sbjct: 248 QVYVFPASHYIAGPERMERAINGIEKELEVRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 307 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G+C +ENYS + R PG PP TL +Y PED LL +DESHVT+PQI MY GD RK Sbjct: 308 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 367 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL ++GFRLPS +DNRPL++EE+ + +SATPG++EL + G VEQIIRPTGLV Sbjct: 368 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 426 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I VRY+HS+ Sbjct: 427 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 486 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTI Sbjct: 487 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 546 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N + I+PQ +++KI +++ Sbjct: 547 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 606 Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762 I E+ T ++ + + K GKA Sbjct: 607 IAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKAATAPTDQ 666 Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ +K Sbjct: 667 PGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 705 >gi|229087642|ref|ZP_04219771.1| UvrABC system protein B [Bacillus cereus Rock3-44] gi|228695683|gb|EEL48539.1| UvrABC system protein B [Bacillus cereus Rock3-44] Length = 658 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 477/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA Sbjct: 5 FEIVSEYSPQGDQPRAIKQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ +++ R+ FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASIDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHVT+PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPEDFLIVMDESHVTVPQVRAMYNGDKARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELEHAPE-VVEQIIRPTGLLDPQID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD ITKS+ +A++ET RRREKQ +N++H I P+++++++ +VI Sbjct: 544 NENGHVIMYADRITKSMGIAMEETKRRREKQEAYNEEHGITPKTIQKEVRDVIRATTA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + A ++KK+ + + + +M AA L+FE AA +RD + L++ Sbjct: 602 AEETEVYDAAPAKKMTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELQA 656 >gi|167771427|ref|ZP_02443480.1| hypothetical protein ANACOL_02793 [Anaerotruncus colihominis DSM 17241] gi|167666067|gb|EDS10197.1| hypothetical protein ANACOL_02793 [Anaerotruncus colihominis DSM 17241] Length = 663 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/656 (53%), Positives = 470/656 (71%), Gaps = 7/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI L +GI + Q LLGVTGSGKTFTMA +IE + RP +++A Sbjct: 4 FKLVSPFKPTGDQPEAIEALTRGILAGAHEQTLLGVTGSGKTFTMANIIERVNRPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+S+IN++I+++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENAVEYFVSYYDYYQPEAYIAHTDTYIEKDSAINDEIEKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +G Y M+V L+ G ++ EL+ LV+ QY+R Sbjct: 124 SATAALGERRDVIIVASVSCIYTLGDPIDYKNMVVSLRTGMQKDRDELIKKLVELQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKI 379 DI +R FRV GD +EIFP + D A RV FG++I+ I+E +TG+ ++NV T I Sbjct: 184 DINFVRNKFRVRGDVVEIFPVYSGDTAVRVEFFGDEIDRITEINTVTGE-VKNVVTHAAI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y SHY+ P + A++ I+ E R+ ++ G+L+EAQR+ +R YD+EM++ G C Sbjct: 243 YPASHYIVPPEKMRVAIEEIRREADERVAYFKENGKLIEAQRIAERTNYDIEMMQEIGFC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + IENYSR ++GR PG P TL +Y PED +LFVDESHVT+PQ+ GMY GD RK +L + Sbjct: 303 KGIENYSRVISGRAPGSTPYTLLDYFPEDFVLFVDESHVTLPQVRGMYGGDRSRKISLID 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ + VSATPG++E E+ IVEQ+IRPTGL DP + Sbjct: 363 YGFRLPSALDNRPLNFDEFYAKLNQIVFVSATPGAFEREKSTQ-IVEQVIRPTGLCDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN A G R+L+T LTK+MAEDLT Y+ +R+RYMH ++ T+ Sbjct: 422 EVRPVEGQIDDLLSEINQRAAAGERVLITTLTKKMAEDLTTYMENMGVRIRYMHHDIDTI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FD LVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAA Sbjct: 482 ERMEIIRDLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN KVI+YAD++T+S++ AI ET RRRE QL +N++H I PQ++K+ + ++++ + Sbjct: 542 RNAQGKVIMYADSVTESMERAISETYRRREIQLAYNQEHGIVPQTIKKDVRDILEISARD 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D T + LS K+ +A + L +M AA L FE AA +RD+I++LK+ Sbjct: 602 DRDTRK----KRGKKLSHKEREALIAKLTLEMKNAAKILEFEHAAYLRDKIQKLKA 653 >gi|297588591|ref|ZP_06947234.1| excision endonuclease subunit UvrB [Finegoldia magna ATCC 53516] gi|297573964|gb|EFH92685.1| excision endonuclease subunit UvrB [Finegoldia magna ATCC 53516] Length = 656 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/657 (52%), Positives = 473/657 (71%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L G+ + + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH Sbjct: 63 HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+VSSVSCIYG+G Y +++ L+ G ++ E++ L+ QY R Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS++IFP+ + + R+ FG++I+ I+E LTG+ + + IY Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + + A+ I+EEL+ R + +LLEAQRLEQR YD+EML+ G C Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRSKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R PG P TL +Y P+D + +DESHVT+PQI GMY GD RK +L +Y Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF E+ + I VSATPG +E + +VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLRFNEFESMMNQVIYVSATPGKYEKAKTNE-VVEQIIRPTGLLDPKIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GK+DVLVGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+Y DTIT+S+ +AI ET RRRE Q E+N++HNI P ++ + + + I + Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQKEYNEEHNIIPTTINKSVRKRIQNTFV-- 599 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A N S D +++ SK + + +++L +M AA+ L+FE AA +RD+I+ LK++ Sbjct: 600 -AEENESYDVNKVTEFSKDEIEVIIENLNTEMLKAAEELDFERAATLRDQIRNLKNT 655 >gi|228936450|ref|ZP_04099248.1| UvrABC system protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823282|gb|EEM69116.1| UvrABC system protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 658 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|308177709|ref|YP_003917115.1| excinuclease ABC subunit B [Arthrobacter arilaitensis Re117] gi|307745172|emb|CBT76144.1| excinuclease ABC subunit B [Arthrobacter arilaitensis Re117] Length = 695 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/673 (51%), Positives = 476/673 (70%), Gaps = 22/673 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L + I++ EK +LLG TG+GK+ T A ++E +QRP +V+ Sbjct: 14 FEVISEYEPAGDQPQAIKALTERINAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLVLV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELMPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV++VSCIYG+G+ E Y +V ++ G+ + + +L V QY R Sbjct: 134 SATNSLLTRRDTIVVATVSCIYGLGTPEEYVAGMVTVRAGEELNRDAMLRQFVAMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A R+ FG+++E I +P+TG+ IR + I+ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EEQAVRIEFFGDEVEAIHTLHPVTGEVIREETEMYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV ++ A+K I++EL +RL ELE + +L+EAQRL R TYDLEM+E G C Sbjct: 253 PASHYVAGAERMHKAIKRIEDELAVRLKELESQNKLVEAQRLRMRTTYDLEMMEQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P L +Y P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGREAGSAPHCLIDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL + G VEQIIRPTGL+DP + Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKSDGF-VEQIIRPTGLIDPEII 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DEI + R+L+T LTKRMAEDLT+YL E +RV+Y+HS+V T+ Sbjct: 432 VKPTKGQIDDLLDEIRTRVDRDERVLVTTLTKRMAEDLTDYLTEHQVRVQYLHSDVDTIR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G +DVLVGINLLREGLD+PE LVAILDADK+GFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGSYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSATSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD IT ++ AI+ET RRRE Q HNK+H I+P +++KI ++ D + ED Sbjct: 552 NVSGQVIMYADKITDAMGQAIEETNRRREIQEAHNKEHGIDPMPLRKKIADITDQLARED 611 Query: 741 AATTNISIDAQQLSLSKKKGKA-------------------HLKSLRKQMHLAADNLNFE 781 A T + ++ +L+ + K+ KA ++ + +QMH AA L FE Sbjct: 612 ADTQEL-LNNNRLAKNAKRTKASSTVRKDGLAAAPAEDLLTQIEEMTEQMHAAAAELQFE 670 Query: 782 EAARIRDEIKRLK 794 AARIRDE+ LK Sbjct: 671 LAARIRDEVSELK 683 >gi|329121131|ref|ZP_08249762.1| excision endonuclease subunit UvrB [Dialister micraerophilus DSM 19965] gi|327471293|gb|EGF16747.1| excision endonuclease subunit UvrB [Dialister micraerophilus DSM 19965] Length = 707 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/654 (52%), Positives = 471/654 (72%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP A+A L+KG++ Q+LLG TG+GKTF+MAKVIE++QRP ++++ Sbjct: 23 FKLEAPFGPKGDQPKAVASLVKGLNEGHWAQVLLGATGTGKTFSMAKVIESVQRPTLIIS 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ SEFK+FFP+NAV YFVSYYDY+QPE+Y+P+TDTYI K+SS NE+IDR+RH Sbjct: 83 PNKTLAAQTASEFKDFFPNNAVYYFVSYYDYFQPESYIPQTDTYIAKDSSRNEEIDRLRH 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E YS M + L+ G+ V + E++ LV QY R Sbjct: 143 SATMALFERRDVIIVASVSCIYGLGDPEDYSTMGLSLRPGEEVSRDEIIEKLVNMQYLRN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD++++FP+ + R+ MFG++I+ ++EF ++G+ + I I+ Sbjct: 203 DLNFTRDTFRVRGDTLDVFPASSNNTGVRIEMFGDEIDRLTEFDIVSGETVSERNHIGIF 262 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A++ I EEL RL L ++ RLLEAQRLEQR YDLEM++ G C Sbjct: 263 PASHYVTTSDKMKRAVQTIGEELAERLKILREQDRLLEAQRLEQRTNYDLEMMQEIGYCS 322 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GEPP +L +Y P+D L+ +DESHVT+PQ+ MY GD RK TL +Y Sbjct: 323 GIENYSRHMSQRKAGEPPYSLLDYFPDDFLIMIDESHVTVPQLRAMYNGDRSRKITLVDY 382 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +E+ Q + EQIIRPTGL+DP VE Sbjct: 383 GFRLPSALDNRPLTFDEFTERINQVIYVSATPGPYEM-GVQTNLAEQIIRPTGLLDPSVE 441 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++DV EI R+L+T LTK+MAEDLT+YL + +I+VRY+HS++ T+E Sbjct: 442 VRPIEGQIDDVISEIRKRKDCNERVLITTLTKKMAEDLTDYLMDADIKVRYLHSDIATIE 501 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+TS+IQ IGRAAR Sbjct: 502 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVIILDADKEGFLRSETSMIQVIGRAAR 561 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD+IT S++ AI+ET RRRE Q ++N +HNI P ++++++ ++I+ LE+ Sbjct: 562 NARGHVIMYADSITDSMKYAIEETERRREIQKKYNIEHNIIPHTIQKRVKDLINLTKLEE 621 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +++ + +LS + +K + K M AA+ + FEEAA RD++ LK Sbjct: 622 KSVA-YELNSDKRNLSDEDLFKQMKRVEKDMKKAAELMEFEEAALWRDKLSELK 674 >gi|315649791|ref|ZP_07902874.1| excinuclease ABC, B subunit [Paenibacillus vortex V453] gi|315274765|gb|EFU38146.1| excinuclease ABC, B subunit [Paenibacillus vortex V453] Length = 663 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/655 (53%), Positives = 476/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P GDQP AI L++G+H +K Q LLG TG+GKTFT+A+ I + RP +V+A Sbjct: 11 FEIESEFQPQGDQPTAIDALVEGLHQGKKHQTLLGATGTGKTFTIAQTIAKVNRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH Sbjct: 71 HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS Y ++++ L++G + ++LS LV QY+R Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPHEYGELLLSLRVGMEKPRNQILSRLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD IEIFP+ + A RV +FG++IE I+E LTG+ + + + I+ Sbjct: 191 DINFVRGTFRVRGDVIEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGERDHVAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A+ I+ EL+ RL L EG+LLEAQRLEQR YD+EM++ G C Sbjct: 251 PASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R G P TL +Y P+D L +DESHVT+PQI MY GD RK L ++ Sbjct: 311 GIENYSGPLTFREAGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTVLVDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +E+E C+ +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCE-TMVEQIIRPTGLLDPIID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R+L+T LTK+M+EDLT+YL E I+VRYMHS++KTLE Sbjct: 430 VRPTEGQIDDLISEIHDRVERDERVLVTTLTKKMSEDLTDYLKEIGIKVRYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLG F VLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+Y + IT S+ AI ET RRR Q+ +N++H I PQ++++KI +VI+ + + Sbjct: 550 NSEGKVIMYGNKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKIRDVIEATKVAE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + + Q+ +SKK+ + ++ L+ +M AA NL FE AA +RD + L++ Sbjct: 610 GKTDYLVGEGQK--MSKKERQNLIQRLQSEMKEAAKNLQFERAAELRDALLELQA 662 >gi|302518411|ref|ZP_07270753.1| excinuclease ABC, B subunit [Streptomyces sp. SPB78] gi|302427306|gb|EFK99121.1| excinuclease ABC, B subunit [Streptomyces sp. SPB78] Length = 717 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/699 (50%), Positives = 480/699 (68%), Gaps = 42/699 (6%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 + + F++ + Y PSGDQP AIA+L K + EK +LLG TG+GK+ T A +IE +QRP Sbjct: 9 RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 68 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++ Sbjct: 69 TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 128 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+GD +++ ELL V Sbjct: 129 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDELLRRFVDI 188 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I + + Sbjct: 189 QYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 247 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ SHY+ + A+ I++EL++RL ELEK+G+LLEAQRL R TYD+EML Sbjct: 248 QVYVFPASHYIAGPERMERAINGIEKELEVRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 307 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G+C +ENYS + R PG PP TL +Y PED LL +DESHVT+PQI MY GD RK Sbjct: 308 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 367 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL ++GFRLPS +DNRPL++EE+ + +SATPG++EL + G VEQIIRPTGLV Sbjct: 368 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 426 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I VRY+HS+ Sbjct: 427 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 486 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTI Sbjct: 487 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 546 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N + I+PQ +++KI +++ Sbjct: 547 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 606 Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762 I E+ T ++ + + K GKA Sbjct: 607 IAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKAATVPTDQ 666 Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ +K Sbjct: 667 PGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 705 >gi|163942851|ref|YP_001647735.1| excinuclease ABC subunit B [Bacillus weihenstephanensis KBAB4] gi|163865048|gb|ABY46107.1| excinuclease ABC, B subunit [Bacillus weihenstephanensis KBAB4] Length = 658 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 476/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPKAI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI+ + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N+KH I P+++++ + +VI Sbjct: 544 NANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATTA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T I ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 602 AEDTEIYEVTPAKKMTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|196039563|ref|ZP_03106868.1| excinuclease ABC, B subunit [Bacillus cereus NVH0597-99] gi|229094262|ref|ZP_04225338.1| UvrABC system protein B [Bacillus cereus Rock3-42] gi|196029723|gb|EDX68325.1| excinuclease ABC, B subunit [Bacillus cereus NVH0597-99] gi|228689115|gb|EEL42938.1| UvrABC system protein B [Bacillus cereus Rock3-42] Length = 658 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|300361294|ref|ZP_07057471.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03] gi|300353913|gb|EFJ69784.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03] Length = 671 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G + EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFENGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V + G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I L+ Sbjct: 609 EKENKESFDDLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663 >gi|229199283|ref|ZP_04325951.1| UvrABC system protein B [Bacillus cereus m1293] gi|228584208|gb|EEK42358.1| UvrABC system protein B [Bacillus cereus m1293] Length = 658 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|313622414|gb|EFR92875.1| excinuclease ABC subunit B [Listeria innocua FSL J1-023] Length = 663 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 472/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 10 FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 130 SATAALFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ IK EL+ RL L E +LLEAQRLEQR YDLEM+E G C Sbjct: 250 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDLEMMEEMGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++ Sbjct: 310 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQIVIDESHVTMPQIRGMFNGDQARKQMLVDH 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLE Sbjct: 429 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 489 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I +I Sbjct: 549 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAAT---S 605 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA ++ LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 606 AADEREAVKQHDLSKMSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 661 >gi|256846273|ref|ZP_05551730.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_36A2] gi|256718042|gb|EEU31598.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_36A2] Length = 663 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/659 (52%), Positives = 482/659 (73%), Gaps = 16/659 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ +DY P+GDQPAAI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP+++ Sbjct: 4 NLFKIHSDYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ L+ +Y Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + +K IK++LK+ + + E + +LLEAQRL+QR YDLEM+ G Sbjct: 243 VIYPATQYLTADNDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD RK +L Sbjct: 303 YCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595 Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790 ED + I+ ++ +KK + KA ++ L K++ + L+FE+A +RDE+ Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653 >gi|168334395|ref|ZP_02692574.1| excinuclease ABC, B subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 659 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/654 (53%), Positives = 463/654 (70%), Gaps = 4/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ GDQ AAI+ L + I S + Q LLGVTGSGKTFTMA +IE Q+P +++A Sbjct: 4 FRLHSDFAAMGDQTAAISVLSESIESGNRYQTLLGVTGSGKTFTMANIIEQTQKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV ++DT+IEK+SS+NE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAQSDTFIEKDSSVNEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G Y ++ ++ G ++ +LL LV QY R Sbjct: 124 SATASLAERRDVIIVASVSCIYGLGDPLDYEDQVLSIRTGMDFDRDDLLRKLVHIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +E+ P+ + + A RV FG++IE+ISE LTG+ + + I+ Sbjct: 184 DDDFSRGTFRVRGDVVEVIPAGMSESAIRVEFFGDEIEKISEIDSLTGKVLGIRNHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY L+ A+K I+ EL +L+EL+K+ +LLE QRL QR +D+EML G C Sbjct: 244 PGSHYTVSPDKLSAAIKRIESELNTQLLELKKQDKLLEMQRLTQRTNFDIEMLREMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+GR+ G P TL +Y P+D L+ VDESH+T+PQI GM GD RK+TL +Y Sbjct: 304 GIENYSLHLSGRDYGSTPFTLLDYFPDDYLIIVDESHITLPQIRGMSNGDRARKSTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATP +ELE + I EQ+IRPTGL+DP +E Sbjct: 364 GFRLPSAIDNRPLNFDEFEQKINQILYVSATPSQYELEHSEA-IGEQLIRPTGLLDPAIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ Q++D+ +I+ ++L+T LTKRM+EDLT YL E I+V+Y+HS+++TLE Sbjct: 423 IKXXTGQIDDLLTQIHSTVAAAGKVLVTTLTKRMSEDLTAYLQEVGIKVKYLHSDIETLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RIEIVRDLRMGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSATSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADTIT+S+++AIDET RRR+ Q E+N+ H I PQ++K+ + E+I E Sbjct: 543 NSQGRVIMYADTITRSMKIAIDETNRRRKIQQEYNEAHGITPQTIKKAVRELIAATKSEK 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ATT I+ S+S + + + K M AA L FE+AA +RD + LK Sbjct: 603 TATT---INKSPESMSAVELERAITKTEKSMKKAAQELEFEKAATLRDALIELK 653 >gi|47567376|ref|ZP_00238089.1| excinuclease ABC, B subunit [Bacillus cereus G9241] gi|47568446|ref|ZP_00239146.1| excinuclease ABC, B subunit [Bacillus cereus G9241] gi|47569268|ref|ZP_00239953.1| excinuclease ABC, B subunit [Bacillus cereus G9241] gi|118480209|ref|YP_897360.1| excinuclease ABC subunit B [Bacillus thuringiensis str. Al Hakam] gi|228988390|ref|ZP_04148482.1| UvrABC system protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158730|ref|ZP_04286788.1| UvrABC system protein B [Bacillus cereus ATCC 4342] gi|47554039|gb|EAL12405.1| excinuclease ABC, B subunit [Bacillus cereus G9241] gi|47554837|gb|EAL13188.1| excinuclease ABC, B subunit [Bacillus cereus G9241] gi|47555997|gb|EAL14335.1| excinuclease ABC, B subunit [Bacillus cereus G9241] gi|118419434|gb|ABK87853.1| Excinuclease ABC subunit B [Bacillus thuringiensis str. Al Hakam] gi|228624714|gb|EEK81483.1| UvrABC system protein B [Bacillus cereus ATCC 4342] gi|228771371|gb|EEM19845.1| UvrABC system protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 658 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +NK+H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|23099943|ref|NP_693409.1| excinuclease ABC subunit B [Oceanobacillus iheyensis HTE831] gi|81846020|sp|Q8ENJ5|UVRB_OCEIH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|22778174|dbj|BAC14444.1| excinuclease ABC subunit B [Oceanobacillus iheyensis HTE831] Length = 660 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/655 (53%), Positives = 477/655 (72%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI ++ K + + ++ Q LLG TG+GKTFTM+ V++ + RP +V+A Sbjct: 5 FELVSAYDPAGDQPNAINEITKKVLAGQRHQTLLGATGTGKTFTMSNVVKEINRPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIYG+G+ E Y ++ L++G ++ +LL LV+ QY R Sbjct: 125 SATSALFERQDVLIVASVSCIYGLGNPEEYKSQVLSLRMGMEKDRDQLLRDLVEVQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS+EI P+ E+ RV FG++I+ I E LTG+ I + E + I+ Sbjct: 185 DINFQRGTFRVRGDSVEIIPASHEEYCIRVEFFGDEIDRIREVDALTGEIIGDREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L E+ G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKIAIQNIEKELEEQLKEMRDNGKLLEAQRLEQRTNYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL ++ PED L+ +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLTLRGPGAVPYTLLDFFPEDFLVIIDESHVTLPQIRGMFNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRF+E+ + VSATPG +ELE + EQIIRPTGL+DP VE Sbjct: 365 GFRLPSAMDNRPLRFQEFEDKTKQLVYVSATPGPYELEHSPE-MTEQIIRPTGLLDPKVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ +EI + ++ R+L+T LTK+M+EDLT+YL E ++V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDNLIEEIRIRMEKNERVLITTLTKKMSEDLTDYLKEIGMKVAYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE+IRDLR+GKFDVLVGINLLREGLDIPE LV+ILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEVIRDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD +T S++ AIDET RRR Q E+N++H I P+++++++ +VI + Sbjct: 544 NENGKVIMYADKMTDSMKKAIDETNRRRTIQTEYNEQHGITPKTIRKEVRDVIKATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + Q ++KK+ + ++ + +M AA +L+FE+AA +RD I LK+ Sbjct: 604 ETESYEPKTKQINKMTKKEREKVIEQMENEMKQAAKDLDFEKAAELRDVILELKA 658 >gi|256832479|ref|YP_003161206.1| excinuclease ABC, B subunit [Jonesia denitrificans DSM 20603] gi|256686010|gb|ACV08903.1| excinuclease ABC, B subunit [Jonesia denitrificans DSM 20603] Length = 702 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/674 (52%), Positives = 475/674 (70%), Gaps = 29/674 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ PSGDQP+AIA+L + I EK +LLG TG+GK+ T A +IE +QRP ++MA Sbjct: 27 FDVVSEFSPSGDQPSAIAELTRRIQGGEKDVVLLGATGTGKSATSAWLIEQLQRPTLIMA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH Sbjct: 87 PNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ + Y +VQ+ +GD +++ LL V QY R Sbjct: 147 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQIDVGDEIDRDGLLRHFVSMQYTRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG+DIE I +PLTG+ + V+ I I+ Sbjct: 207 DVAFTRGTFRVRGDTVEIIPVY-EELAIRLEFFGDDIEAIYTLHPLTGEVVSQVQRIHIF 265 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL+ RL EL ++ +LLEAQRL R TYD+EM+ GSC Sbjct: 266 PASHYVAGPERMERAIASIEAELEERLAELNRDNKLLEAQRLSMRTTYDIEMMRQVGSCS 325 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y P+D LL +DESHVT+PQI MY GD RK +L E+ Sbjct: 326 GIENYSRHIDGRAPGSAPHTLLDYFPDDFLLIIDESHVTVPQIGAMYEGDASRKRSLVEH 385 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE+ T+ +SATPG +EL G VEQIIRPTGLVDP + Sbjct: 386 GFRLPSAMDNRPLTWEEFTERIGQTVYLSATPGDYELALSNG-TVEQIIRPTGLVDPKIT 444 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DEIN + RIL+T LTK+M+EDLT+YL ++ + VRY+HS++ TL+ Sbjct: 445 VKPTKGQIDDLLDEINERTAKNERILVTTLTKKMSEDLTDYLLDKGVAVRYLHSDIDTLK 504 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADK+GFLRS SLIQTIGRAAR Sbjct: 505 RVELLRGLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSPRSLIQTIGRAAR 564 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD+IT ++ AI+ET RRREKQ+ +N +H ++PQ +++KI +V D + ED Sbjct: 565 NVSGEVHMYADSITPAMAQAIEETERRREKQIAYNTEHGVDPQPLRKKIADVTDMLARED 624 Query: 741 AATTNISIDAQQL------------------SLSKKKG--KAHLKSLRKQMHLAADNLNF 780 ID Q+L + G A + L +QMH AA L F Sbjct: 625 -------IDTQELLAGGYRQTTTPTPAHTPSGVPSATGDLSALITQLTEQMHQAAAELQF 677 Query: 781 EEAARIRDEIKRLK 794 E AAR+RDE+ LK Sbjct: 678 ELAARLRDELSDLK 691 >gi|296140129|ref|YP_003647372.1| excinuclease ABC subunit B [Tsukamurella paurometabola DSM 20162] gi|296028263|gb|ADG79033.1| excinuclease ABC, B subunit [Tsukamurella paurometabola DSM 20162] Length = 720 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/692 (51%), Positives = 478/692 (69%), Gaps = 33/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI QL +++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FQVVSEYEPAGDQPQAIEQLAGRLNAGERDVVLLGATGTGKSATTAWLIEKVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRAMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY VQL++G V++ LL LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGMEVDRDALLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R VE ++I+ Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVENLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL+ RL E E++G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMARAIEGIESELEERLAEFERQGKLLEAQRLRMRTQYDVEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI M+ GD RK L ++ Sbjct: 327 GIENYSRHIDGRAAGSAPATLLDYFPEDFLLVIDESHVTVPQIGAMFEGDTSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFTERVGQTVYLSATPGQYELGQSGGEFVEQVIRPTGLVDPQVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 447 IKPTKGQIDDLMHEIRERTEKDERVLVTTLTKKMAEDLTDYLLEAGIRVRYLHSDIDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N + ++PQ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMRNAIDETDRRREKQIAYNTEMGVDPQPLRKKIADILDQVYTE- 625 Query: 741 AATTNISIDAQQLSLSK-KKGKAHLKS----------------------------LRKQM 771 A T +I + ++ ++ + L+S L QM Sbjct: 626 ADDTEAAIGGPGRNATRGRRAQGELRSASSVSAGMYEGEDVKSMPRAELADLISELTDQM 685 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA L FE A RIRDEI LK +G+D Sbjct: 686 MNAARELQFELAGRIRDEIADLKKE--LRGMD 715 >gi|218906339|ref|YP_002454173.1| excinuclease ABC, B subunit [Bacillus cereus AH820] gi|228917770|ref|ZP_04081310.1| UvrABC system protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301056626|ref|YP_003794837.1| excinuclease ABC subunit B [Bacillus anthracis CI] gi|218537443|gb|ACK89841.1| excinuclease ABC, B subunit [Bacillus cereus AH820] gi|228841875|gb|EEM86982.1| UvrABC system protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378795|gb|ADK07699.1| excinuclease ABC subunit B [Bacillus cereus biovar anthracis str. CI] Length = 658 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|15827723|ref|NP_301986.1| excinuclease ABC subunit B [Mycobacterium leprae TN] gi|221230200|ref|YP_002503616.1| excinuclease ABC subunit B [Mycobacterium leprae Br4923] gi|13431967|sp|P57991|UVRB_MYCLE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|13093274|emb|CAC31768.1| excinuclease ABC subunit B [Mycobacterium leprae] gi|219933307|emb|CAR71482.1| excinuclease ABC subunit B [Mycobacterium leprae Br4923] Length = 698 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/690 (52%), Positives = 475/690 (68%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVISPHEPAGDQPAAIDELQRRILAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELRGMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+L + + V + LL LV QY R Sbjct: 127 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELAVSNEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL E E++G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAQAISAIEEELAERLAEFERQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRKRANADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT S+ AIDET RRR KQ+ +N + I+PQ +++KI +++D + E Sbjct: 546 NVSGEVHMYADTITDSMTEAIDETERRRAKQIAYNNANGIDPQPLRKKIADILDQVYREA 605 Query: 741 AATTNISIDAQQLSLSKKK-----------------------GKAHL----KSLRKQMHL 773 T + + ++S+ + +A L K L QM Sbjct: 606 DDTDTVQVGGSGRNVSRGRRAQSEPVRSVSVGVFEGRDTAGMPRAELADLIKDLTAQMMA 665 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 666 AASDLQFELAARFRDEIADLKKE--LRGMD 693 >gi|30023201|ref|NP_834832.1| excinuclease ABC subunit B [Bacillus cereus ATCC 14579] gi|229130411|ref|ZP_04259369.1| UvrABC system protein B [Bacillus cereus BDRD-Cer4] gi|81837237|sp|Q815I3|UVRB_BACCR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|29898761|gb|AAP12033.1| Excinuclease ABC subunit B [Bacillus cereus ATCC 14579] gi|228653110|gb|EEL08990.1| UvrABC system protein B [Bacillus cereus BDRD-Cer4] Length = 658 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL + G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNENGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVTYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EIETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|227496065|ref|ZP_03926374.1| excision endonuclease subunit UvrB [Actinomyces urogenitalis DSM 15434] gi|226834393|gb|EEH66776.1| excision endonuclease subunit UvrB [Actinomyces urogenitalis DSM 15434] Length = 698 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/677 (52%), Positives = 482/677 (71%), Gaps = 25/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQPAAIA+L + +++ EK +LLG TG+GK+ T A ++E +QRP +++ Sbjct: 14 FEVISPYTPSGDQPAAIAELTERLNAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQMAAEFRELLPGNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y + L +G+ +++ ELL V QY R Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLAVGERIDRDELLRRFVGMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++IE ++ +P+TG I V+ + ++ Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIESLATLHPVTGDVISTVDQVFVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV L A+K I++EL RL LE++G+LLEAQRL R TYDLEML G+C Sbjct: 253 PASHYVAGPERLTRAIKGIEDELADRLAVLERDGKLLEAQRLRMRTTYDLEMLGQIGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS ++ GR+PG PP TL +Y PED LL +DESHVT+PQI M+ GD RK TL ++ Sbjct: 313 GVENYSMHIDGRSPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ T+ +SATPG +E+++ G+ VEQIIRPTGLVDP + Sbjct: 373 GFRLPSALDNRPLTFAEFEERIGQTVYLSATPGDYEMKRSDGV-VEQIIRPTGLVDPKIV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +E+ + R+L+T LTKRMAEDLT YL +R ++V Y+HS+V TL Sbjct: 432 VKPTQGQIDDLLEEVRARTDKDERVLVTTLTKRMAEDLTTYLADRGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRLGQFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T +++ AIDET RRR KQ+ +N H I+PQ +++KI +V D + ED Sbjct: 552 NVSGEVHMYADKVTPAMREAIDETERRRAKQMAYNDAHGIDPQPLRKKIADVTDMLARED 611 Query: 741 AATTNISI-------DAQQLSLSKKKGKAHLK----------------SLRKQMHLAADN 777 T + D Q + KK +A ++ L QMH AA++ Sbjct: 612 VDTEELLAGGYRGHEDRQVATRRKKAAEATVREKLAGAAEADLVELINELTGQMHAAAED 671 Query: 778 LNFEEAARIRDEIKRLK 794 L+FE AAR+RDEI+ LK Sbjct: 672 LHFELAARLRDEIQDLK 688 >gi|331003461|ref|ZP_08326960.1| UvrABC system protein B [Lachnospiraceae oral taxon 107 str. F0167] gi|330412507|gb|EGG91896.1| UvrABC system protein B [Lachnospiraceae oral taxon 107 str. F0167] Length = 655 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/656 (53%), Positives = 460/656 (70%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+ G + Q LLG TGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEFSPTGDQPQAIEALVNGFKEGNQFQTLLGATGSGKTFTMANVIQRLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 63 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS Y +M+V L+ G ++ +++ L+ QY R Sbjct: 123 SATASLSERKDVIIVASVSCIYGLGSPIDYQEMVVSLRPGMERDRDDVIRKLIDMQYDRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+FP+ A R FG+++E+I E LTG + + I+ Sbjct: 183 DMDFHRGTFRVRGDVLEVFPAASTSTALRFEFFGDEVEKILEIDTLTGNILAELAHAVIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A ++I EE R+ + E +L+EAQR+++R +D+EM+ TG C Sbjct: 243 PASHYVVAPEKMKIATEHILEECDERVKFFKSEDKLIEAQRIDERTHFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y +D L+ VDESH+TIPQ+ GMY GD RK TL Y Sbjct: 303 GIENYSRHLTGSAPGEPPYTLIDYFKDDFLIIVDESHITIPQVRGMYAGDRSRKTTLVNY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E + + + EQIIRPTGL+DPP+ Sbjct: 363 GFRLPSALDNRPLEFSEFESKIDQMLFVSATPSVYENDH-EMLRTEQIIRPTGLLDPPIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++ +IL+T LTKRMAEDLTEY+ E IRVRY+HS++ TLE Sbjct: 422 VRPVEGQIDDLISEVNKEIEKKNKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL KFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAEIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T S++ AIDET RRR Q +N++H I P ++K+ + D I + Sbjct: 542 NADGHVIMYADNMTDSMKAAIDETYRRRGIQEAYNREHGITPTTIKKAVR---DLIAISK 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 AA + +ID S+ K + +K L K+M AA L+FE AA +RD+I L+++ Sbjct: 599 AAESVSTIDKDVESMDKAEINKLIKELEKKMFRAAAELDFENAALLRDKISELRAN 654 >gi|260684917|ref|YP_003216202.1| excinuclease ABC subunit B [Clostridium difficile CD196] gi|260688575|ref|YP_003219709.1| excinuclease ABC subunit B [Clostridium difficile R20291] gi|260211080|emb|CBA66456.1| excinuclease ABC subunit B [Clostridium difficile CD196] gi|260214592|emb|CBE07162.1| excinuclease ABC subunit B [Clostridium difficile R20291] Length = 664 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/659 (52%), Positives = 481/659 (72%), Gaps = 7/659 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D F++++D+ P+GDQP AI ++ I+ EK LLGVTGSGKTFTMA +I+ +++P Sbjct: 7 DTMDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPT 66 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 ++MA NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID Sbjct: 67 LIMAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 126 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++RHSAT S+LER D I++SSVSCIYG+G + Y ++++ ++ G ++ +++ L++ Q Sbjct: 127 KLRHSATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQ 186 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R DI RGTFRV GD +EIFP+ ++ A R+ FG++++ I+E +TG+ + Sbjct: 187 YERNDINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNH 246 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + I+ SHYVT + A+ I+ EL+ ++ ++ RLLEAQR+EQR YD+EML+ Sbjct: 247 VVIFPASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEI 306 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G CQ IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD RK + Sbjct: 307 GFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTS 366 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L E GFRLPS +DNRPL F+E+ + VSATPG +E++ + I EQIIRPTGL+D Sbjct: 367 LIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLD 425 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P VE+R Q++D+ EI ++ R+L+T LTK+M+EDLT YL E I+V+Y+HS++ Sbjct: 426 PIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDI 485 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 TLER EIIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS+T+LIQTIG Sbjct: 486 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIG 545 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN N +VI+YAD IT S+Q AIDET RRR+ Q +N++HNI P+++++ I + I+ Sbjct: 546 RAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKNIRDSIEAT 605 Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + E+ IS D K + +A++ L+ +M AA NL FE AA +RD++K+L+ Sbjct: 606 KVAEEEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 659 >gi|330469191|ref|YP_004406934.1| excinuclease ABC subunit B [Verrucosispora maris AB-18-032] gi|328812162|gb|AEB46334.1| excinuclease ABC subunit B [Verrucosispora maris AB-18-032] Length = 702 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/689 (51%), Positives = 474/689 (68%), Gaps = 29/689 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAI +L + + ++ +LLG TG+GK+ T A +IE MQRP +V+A Sbjct: 12 FKVISEFQPAGDQPAAIDELERRVRRGDRHTVLLGATGTGKSATTAWLIERMQRPTLVLA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQL EF P NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS+NE+++R+RH Sbjct: 72 PNKTLCAQLAKEFSELLPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSVNEEVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VS IYG+G+ E Y V++ +G +++ +LL LV QY R Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVAVGQELDRDQLLRRLVDIQYTRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ +FG+++E++ PLTG +R V+ + I+ Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVEKLYYLNPLTGDVVREVDHLLIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY + A++ I+ EL RL ELE++G+LLEAQRL R TYD+EM+ G C Sbjct: 251 PATHYAAGPQRMERAIRDIETELAERLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PG PP L +Y P+D L +DESHVTIPQI GMY GD RK L ++ Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVIDESHVTIPQIGGMYEGDASRKRMLIDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRF+E+ + +SATPG WELE QG VEQ+IRPTGLVDP V Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGPWELEHAQGEFVEQVIRPTGLVDPEVV 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ + Q++D+ EI L ++ R+L+T LTK+MAEDL++YL E IRVRY+HSEV TL Sbjct: 431 IKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRRGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 NV+ +V +YAD IT S+ AIDET RRR KQ+ HN+ H I+P+ +++KI +++D I Sbjct: 551 NVSGQVHMYADKITPSMADAIDETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610 Query: 739 EDAATTNISIDAQQLSLSK------------------KKGKAH------LKSLRKQMHLA 774 ED T +QLS K ++G A ++ L QM A Sbjct: 611 EDIEATRAGGAVRQLSRGKAPVKETRSRARAGAATPAREGMARAELAQLIQDLSDQMLAA 670 Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 A L FE AARIRDE+ LK +G+D Sbjct: 671 ARELQFELAARIRDEVSELKKE--LRGMD 697 >gi|228948883|ref|ZP_04111158.1| UvrABC system protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810845|gb|EEM57191.1| UvrABC system protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 658 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRRAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|116492251|ref|YP_803986.1| excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745] gi|116102401|gb|ABJ67544.1| Excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745] Length = 667 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 462/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L+ GI S EK Q+LLG TG+GKTFT++ VI+ + +P ++++ Sbjct: 10 FELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQKVNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID +RH Sbjct: 70 HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y + L++G +++ +LL LV QY R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPREYQDQALTLRVGQEIDRNKLLRELVDIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + + RV FG++I+ + E LTG+ I + + I I+ Sbjct: 190 DIDFQRGRFRVHGDVVEIFPAANDAHSIRVEFFGDEIDRMREMDALTGEIIGDRDHITIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I+ ELK RL EL+ EG+LLEAQRL QR TYD+EML+ G Sbjct: 250 PATHFMTNEDRMEHAIKNIEAELKDRLEELDGEGKLLEAQRLRQRTTYDIEMLKEMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D LL VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + +SATPG +E E+ +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHINQVVYMSATPGDYENERTNN-VVQQIIRPTGLLDPIIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+YL + I+V Y+HS++KTLE Sbjct: 429 VRPIMGQMDDLLGEINQRIEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRDLR+GK+DVLVGINLLREG+D+PE LVAILDADKEGFLR+ S+IQ GRAAR Sbjct: 489 RTRIIRDLRVGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 N N VI+YAD +TKS+Q IDET RRR Q +N++H I P ++K+ I +I E Sbjct: 549 NENGHVIMYADHMTKSMQETIDETARRRTIQEAYNREHGITPHTIKKDIRSLISSTSDTE 608 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + +D + K K + +L QM AA L+FE+AA +RD + LK+ Sbjct: 609 DKGKKDDFLDVDFADMDSKDQKEMIANLEDQMRAAAKKLDFEKAANLRDTVLELKA 664 >gi|116333297|ref|YP_794824.1| excinuclease ABC subunit B [Lactobacillus brevis ATCC 367] gi|122270015|sp|Q03SM9|UVRB_LACBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116098644|gb|ABJ63793.1| Excinuclease ABC subunit B [Lactobacillus brevis ATCC 367] Length = 668 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/656 (53%), Positives = 463/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL GI + EK Q+LLG TG+GKTFT++ VI+ + +P +V++ Sbjct: 10 FDLVSKYQPTGDQPEAINQLTHGIEAGEKAQILLGATGTGKTFTISNVIKNVNKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y +V L++G +E+ LL LV Q++R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPTEYKNHVVSLRVGQEIERDALLRKLVNIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +EIFP+ ++ A RV FG++I+ I E LTG+ + + E + I+ Sbjct: 190 DYDFQRGRFRVHGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEIVGDREHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A I+ ELK RL ELE +G+LLEAQRL+QR TYDLEM+ G Sbjct: 250 PATHFMTNDDIMAQATAGIEGELKERLAELENDGKLLEAQRLKQRTTYDLEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRWMDGRQAGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDRARKQQLVDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E I +SATPG +E EQ +V+QIIRPTGL+DP ++ Sbjct: 370 GFRLPSALDNRPLKLNEVEQHINQVIYMSATPGPYEAEQTDH-VVQQIIRPTGLLDPTID 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R +T LTK+MAEDLT+YL + I+V Y+HS++KTLE Sbjct: 429 VRPIMGQMDDLVGEINQRIEKNERTFVTTLTKKMAEDLTDYLKDLGIKVAYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLRLGK+DVLVGINLLREG+DIPE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTEIMRDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD++T S+Q A+DET RRR+ Q+ +NK+H I P ++ + I ++I D Sbjct: 549 NSHGSVIMYADSVTDSMQAAMDETARRRQIQIAYNKEHGITPTTIIKPIRDLIAVSKKND 608 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A A ++K+ + + L +M AA L+FE+AA +RD I +K+ Sbjct: 609 NAGEKDDFVASDFEDMTKEDQEKLIARLEDEMRAAAKKLDFEQAASLRDTIMDMKT 664 >gi|326798149|ref|YP_004315968.1| UvrABC system protein B [Sphingobacterium sp. 21] gi|326548913|gb|ADZ77298.1| UvrABC system protein B [Sphingobacterium sp. 21] Length = 675 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/674 (50%), Positives = 487/674 (72%), Gaps = 24/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QL++G+ + E Q LLGVTGSGKTFT+A VI QRP ++++ Sbjct: 3 FTISSEYVPTGDQPEAIRQLVEGVEAGEHYQTLLGVTGSGKTFTIANVIAQTQRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAV YFVSYYDYYQPEAY+ ++TYIEK+ IN++I+++R Sbjct: 63 HNKTLAAQLYGEMKQFFPENAVNYFVSYYDYYQPEAYIAHSNTYIEKDLQINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T +L+ R D +VVSS+SCIYG+G+ E +S+ + + +G ++ + L LV+ Y R Sbjct: 123 RTTSALMSGRRDIVVVSSISCIYGMGNPEDFSRSVFRFGVGTTISRNAFLHRLVEILYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD++++FP++++D A+R++ FG++IEE+S P++G+ + +ET+ + Sbjct: 183 TTADFKRGTFRVKGDTVDVFPAYMDD-AYRITFFGDEIEELSVIDPVSGKTLDKMETLAL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VTP+ ++ I++EL R +L K+GR+LEA+RLE+R+ YDLEM+ G C Sbjct: 242 FPANLFVTPKEKFTQSLWAIQDELVQRKEQLVKDGRMLEAKRLEERVNYDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PG P L +Y P+D L+ +DESHVT+PQI MY GD RK +L E Sbjct: 302 SGIENYSRFFDGRQPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKISLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL F+E+ + P TI VSATPG +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLNFQEFESMAPQTIYVSATPGDYELQKTEGVVVEQVIRPTGLLDPTI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR QV+D+ DE++ ++G R+L+T LTKRM+E+LT+Y+ I+VRY+HSE+KTL Sbjct: 422 EIRPVVNQVDDLLDEVDKVTKEGGRVLVTTLTKRMSEELTKYMSRLGIKVRYIHSEIKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 482 ERVEILRGLRLGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRSQTSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME----- 731 RN +VI+YAD+IT S++ IDET RRREKQ+++N++H I P++V +E IME Sbjct: 542 RNDRGRVIMYADSITDSMRATIDETNRRREKQIKYNEEHGIVPRTVGKSREAIMEQTSVA 601 Query: 732 ---------VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 +DP D A++ ++ D +SK + + + + ++ M AA +++F + Sbjct: 602 DFKGGAAKAYVDP----DPASS-VAADPVVQYMSKAQLQKAIDTAKRDMERAAKDMDFLQ 656 Query: 783 AARIRDEIKRLKSS 796 AA++RDE+ L+ + Sbjct: 657 AAKLRDEMFALEKT 670 >gi|242279306|ref|YP_002991435.1| excinuclease ABC subunit B [Desulfovibrio salexigens DSM 2638] gi|242122200|gb|ACS79896.1| excinuclease ABC, B subunit [Desulfovibrio salexigens DSM 2638] Length = 668 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/657 (52%), Positives = 462/657 (70%), Gaps = 3/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY GDQP A+ QL++ I + Q+LLG TG+GKTF MA VI+ + RP +VMA Sbjct: 5 FELVSDYTLKGDQPEAVKQLVENIKHGVQDQILLGATGTGKTFAMANVIKELNRPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL++EFK FP+NAVEYFVSYYDYYQPEAY+P +DTYIEK+SSIN+ ID++RH Sbjct: 65 PNKTLAAQLFNEFKALFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINDDIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D ++V+SVSCIYG+GS E Y++MI+ ++ G + ++L+ LV+ QY+R Sbjct: 125 SATHALLTRRDVLIVASVSCIYGLGSPEFYAKMIIPVEEGQELSMEKLMDKLVEVQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD IEI P++ + A R+ FG++I+ I E PLTG+ IY Sbjct: 185 DYDFHRGTFRVRGDVIEIIPAYAREQALRIEFFGDEIDSILETDPLTGEVTGRRRKTVIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V+ + L A + I+ EL L +KE +L+EAQR+EQR YDLEM+E G C Sbjct: 245 PASHFVSDQDNLERAREDIRNELAETLTLYKKENKLIEAQRIEQRTMYDLEMIEEIGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GE P TL Y P+D LLF+DESH+ +PQ+ MY GD RK TL + Sbjct: 305 GIENYSRHLDGRKEGEAPATLIHYFPDDFLLFMDESHIAVPQVGAMYNGDRSRKTTLVNF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ VSATPG WE+E+ QG++VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLCFDEFLDKIGQTVYVSATPGPWEMERAQGLVVEQIIRPTGLLDPEIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E ++G R+L+T LTKRMAEDLTEY + + +Y+HS++ T+E Sbjct: 425 VRPVKGQMDDLLAECKEREKRGERVLITTLTKRMAEDLTEYFNQMGVEAKYLHSDIDTME 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II+ LR G+F LVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRAAR Sbjct: 485 RMAIIQSLRAGEFVALVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VILYAD +TKS++ AIDET RRR KQ+E+N+ H I PQ++ + + ++ + ++ Sbjct: 545 NAEGRVILYADNVTKSMRTAIDETYRRRAKQMEYNEAHGIVPQTIAKSLDNMLGTLYSDN 604 Query: 741 AATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + I D + L K + ++ L K M A L FE+AA +RD I+ L+ Sbjct: 605 WSGSEVKIAAEDVAEYGLDPAKMEKEVRKLEKDMRKYAAELEFEKAAELRDRIQVLR 661 >gi|237743581|ref|ZP_04574062.1| excinuclease ABC subunit B [Fusobacterium sp. 7_1] gi|229433360|gb|EEO43572.1| excinuclease ABC subunit B [Fusobacterium sp. 7_1] Length = 663 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/659 (52%), Positives = 480/659 (72%), Gaps = 16/659 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ ++Y P+GDQP AI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP+++ Sbjct: 4 NLFKIHSEYRPTGDQPTAINSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ LV +Y Sbjct: 124 RNAATAALIYRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELIKRLVDLRYN 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + +K IK++LK+ + + E E +LLEAQRL+QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKLLEAQRLKQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL G+NPGE P TLFEY P+D LLF+DESH+T+PQI GMY GD RK +L Sbjct: 303 YCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFIDESHITVPQIRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +ELE I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFELEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIMETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595 Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790 ED + I+ ++ +KK + KA ++ L K++ + L+FE+A +RDE+ Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIILRDEM 653 >gi|329940834|ref|ZP_08290114.1| excinuclease ABC subunit B [Streptomyces griseoaurantiacus M045] gi|329300128|gb|EGG44026.1| excinuclease ABC subunit B [Streptomyces griseoaurantiacus M045] Length = 728 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/707 (50%), Positives = 486/707 (68%), Gaps = 45/707 (6%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQP AIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 12 VSTIERTVAPFEVVSPYRPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIE 71 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 72 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 131 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V L++GD +++ +LL Sbjct: 132 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQLLR 191 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 192 RFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 250 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + E + ++ SHY+ + A+ I++EL+ RL EL+++G+LLE+QRL R TYD+ Sbjct: 251 ISDDEQLYVFPASHYIAGPERMERAINGIEKELEERLAELDRQGKLLESQRLRMRTTYDI 310 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C +ENYS + R PG P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 311 EMLRQIGTCSGVENYSMHFDDRGPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 370 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG++EL + G VEQIIR Sbjct: 371 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGTYELSRGDG-HVEQIIR 429 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 430 PTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFVELGIQVR 489 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 490 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 549 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N H I+PQ +++KI Sbjct: 550 LIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRREKQIAYNTAHGIDPQPLRKKIN 609 Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSKK----KGKA----- 762 +++ I ED T + ++ Q+ + KG+A Sbjct: 610 DIVAQIAREDVDTEQLLGTGYRKGKDGKGARTPVPALANHQVPGGPEAPAGKGRAAKGKS 669 Query: 763 ---------------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ +K Sbjct: 670 AETVPTDRPAAALAEQIEEMTTRMRAAAADLQFEIAARLRDEVSEMK 716 >gi|313891867|ref|ZP_07825472.1| excinuclease ABC, B subunit [Dialister microaerophilus UPII 345-E] gi|313119861|gb|EFR43048.1| excinuclease ABC, B subunit [Dialister microaerophilus UPII 345-E] Length = 700 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/654 (52%), Positives = 471/654 (72%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP A+A L+KG++ Q+LLG TG+GKTF+MAKVIE++QRP ++++ Sbjct: 16 FKLEAPFGPKGDQPKAVASLVKGLNEGHWAQVLLGATGTGKTFSMAKVIESVQRPTLIIS 75 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ SEFK+FFP+NAV YFVSYYDY+QPE+Y+P+TDTYI K+SS NE+IDR+RH Sbjct: 76 PNKTLAAQTASEFKDFFPNNAVYYFVSYYDYFQPESYIPQTDTYIAKDSSRNEEIDRLRH 135 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E YS M + L+ G+ + + E++ LV QY R Sbjct: 136 SATMALFERRDVIIVASVSCIYGLGDPEDYSTMGLSLRPGEEISRDEIIEKLVNMQYLRN 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ R TFRV GD++++FP+ + R+ MFG++I+ ++EF ++G+ + I I+ Sbjct: 196 DLNFTRDTFRVRGDTLDVFPASSNNTGVRIEMFGDEIDRLTEFDIVSGETVSERNHIGIF 255 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A++ I+EEL RL L ++ RLLEAQRLEQR YDLEM++ G C Sbjct: 256 PASHYVTTSDKMKRAVQTIEEELAERLKILREQDRLLEAQRLEQRTNYDLEMMQEIGYCS 315 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R GEPP +L +Y P+D L+ +DESHVT+PQ+ MY GD RK TL +Y Sbjct: 316 GIENYSRHMSQRKAGEPPYSLLDYFPDDFLIMIDESHVTVPQLRAMYNGDRSRKTTLVDY 375 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +E+ Q + EQIIRPTGL+DP VE Sbjct: 376 GFRLPSALDNRPLTFDEFTERINQVIYVSATPGPYEM-GVQTNLAEQIIRPTGLLDPSVE 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++DV EI R+L+T LTK+MAEDLT+YL + +I+VRY+HS++ T+E Sbjct: 435 VRPIEGQIDDVISEIRKRKDCNERVLITTLTKKMAEDLTDYLMDADIKVRYLHSDIATIE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR G FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+TS+IQ IGRAAR Sbjct: 495 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVIILDADKEGFLRSETSMIQVIGRAAR 554 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S++ AI+ET RRRE Q ++N +HNI P ++++++ ++I+ LE+ Sbjct: 555 NARGHVIMYADRITDSMKYAIEETERRREIQKKYNIEHNIIPHTIQKRVKDLINLTKLEE 614 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +++ + +LS + +K + K M AA+ + FEEAA RD++ LK Sbjct: 615 KSVA-YELNSDKRNLSDEDLFKQMKRVEKDMKKAAELMEFEEAALWRDKLSELK 667 >gi|170016742|ref|YP_001727661.1| excinuclease ABC, B subunit [Leuconostoc citreum KM20] gi|169803599|gb|ACA82217.1| excinuclease ABC, B subunit [Leuconostoc citreum KM20] Length = 668 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/660 (51%), Positives = 473/660 (71%), Gaps = 6/660 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI+QL+ GI++ K Q+LLG TG+GKTFT++ VI+ +++P +V++ Sbjct: 10 FEVVSKYQPTGDQPRAISQLVSGINAGVKEQILLGATGTGKTFTISNVIKTVKKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+ Sbjct: 70 HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVS I+G+G Y + ++ L++G+ + +L+ L+ Q+ R Sbjct: 130 SATSSLLSRRDVIVVASVSSIFGLGDPHQYQEHVINLRVGNEYGRDQLMRDLIGVQFTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG+FRV GD +EIFP+ ++VA R+ FG++I+ I E LTG+ + + IY Sbjct: 190 DIDFHRGSFRVRGDIVEIFPASEDEVALRIEFFGDEIDRIREINALTGETASERDFVSIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T + A+ I++E+ ++ + E+EG+LLEAQR++QR YDL MLE G Sbjct: 250 PAKHFMTDDNQMQRALNGIRQEMAAQVTKFEQEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ PED L+ VDESHVT+PQ+ GM+ GD RK TL Y Sbjct: 310 GIENYSRWMDGRQAGEPPFTLLDFFPEDFLIIVDESHVTMPQVRGMFNGDRARKETLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +ELE+ + I +QIIRPTGL+DP V Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYELERVTKDHIAQQIIRPTGLLDPEV 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN + R+ +T LTKRMAEDLT+YL I+V Y+H+++KTL Sbjct: 430 EVRPVMGQIDDLVGEINKRTDKNERVFITTLTKRMAEDLTDYLKNVGIKVAYLHADIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLGK+DVL+GINLLREG+D+PE LVAILDADKEGFLR+ SLIQTIGRAA Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD++TKS+Q A+DET RRRE Q+++N H+I P ++K+ I E I Sbjct: 550 RNANGHVIMYADSVTKSMQEAMDETARRREIQMQYNTVHDIVPTTIKKDIRERISVRTET 609 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D +ID Q++ L + + +A +K++ QM AA LNFEEAA++RD + LK+S Sbjct: 610 DGGAE--TIDLTQVAFRDLPQDEQQAIIKNMESQMKSAAKALNFEEAAQLRDSVMSLKAS 667 >gi|170078851|ref|YP_001735489.1| excinuclease ABC subunit B [Synechococcus sp. PCC 7002] gi|169886520|gb|ACB00234.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7002] Length = 673 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/666 (52%), Positives = 471/666 (70%), Gaps = 18/666 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ + P+GDQP AIA+L++ + S+ K Q LLG TG+GKTFTMA VI MQ+P +V Sbjct: 7 VLFRLHAPFEPTGDQPQAIAKLVQSLASQAKYQTLLGATGTGKTFTMAAVIAQMQKPTLV 66 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID + Sbjct: 67 LAHNKTLAAQLCNELRQFFPYNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDML 126 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSATRSL ER D IVV+S+SCIYG+G Y + + LK+G+ ++Q+ +L LV QY Sbjct: 127 RHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAISLKVGEELDQRAVLRQLVTVQYN 186 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ +++++ + Sbjct: 187 RNDTDLSRGNFRVKGDILEIVPAY-EDRVIRVEFFGDEIDAIRLLDPVTGEILQSLDQVN 245 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY H+VTP+ L A + IK EL +L LE E +LLEAQRL+QR +YDLE+L+ G Sbjct: 246 IYPARHFVTPQEQLAIACEQIKAELDSQLTVLEAENKLLEAQRLKQRTSYDLELLQEVGY 305 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C +ENYSR+L GR G PP L +Y PED LL VDESHVT+PQI GMY GD RK L Sbjct: 306 CNGVENYSRFLAGREAGSPPECLIDYFPEDWLLVVDESHVTVPQIRGMYNGDQARKKVLI 365 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS DNRPL+ EE+ + VSATPG+WE+EQ + ++EQ+IRPTG+VDP Sbjct: 366 DHGFRLPSAADNRPLKSEEFWQKVNQCVFVSATPGNWEIEQSEARVIEQVIRPTGVVDPE 425 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +++R QV+D+ EI + R+L+T LTKRMAEDLT+Y ++ + V+Y+HSE+K+ Sbjct: 426 IDVRPTDGQVDDLLGEIRQREKLKERVLITTLTKRMAEDLTDYFSDQGVAVQYLHSEIKS 485 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ERIEI++ LR G+FDVL+G+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGRA Sbjct: 486 IERIEILQALRKGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRA 545 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 AR+V + ILYAD +T S+ AI ET RRR Q+ +NKKHNI PQ +K++ I L Sbjct: 546 ARHVRGQAILYADNLTDSMAKAIAETERRRVIQIAYNKKHNITPQPIKKRDENAILSFL- 604 Query: 739 EDAATTNIS--IDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 +IS ++ QQL + +K +K L +QM AA NL FE+AA +RD Sbjct: 605 ------DISRRLNTQQLQQVVEHMEEVPLEKIPDVIKQLEEQMKEAAKNLEFEQAALLRD 658 Query: 789 EIKRLK 794 +IK+L+ Sbjct: 659 QIKKLR 664 >gi|126701035|ref|YP_001089932.1| excinuclease ABC subunit B [Clostridium difficile 630] gi|254977034|ref|ZP_05273506.1| excinuclease ABC subunit B [Clostridium difficile QCD-66c26] gi|255094361|ref|ZP_05323839.1| excinuclease ABC subunit B [Clostridium difficile CIP 107932] gi|255102615|ref|ZP_05331592.1| excinuclease ABC subunit B [Clostridium difficile QCD-63q42] gi|255308441|ref|ZP_05352612.1| excinuclease ABC subunit B [Clostridium difficile ATCC 43255] gi|255316114|ref|ZP_05357697.1| excinuclease ABC subunit B [Clostridium difficile QCD-76w55] gi|255518775|ref|ZP_05386451.1| excinuclease ABC subunit B [Clostridium difficile QCD-97b34] gi|255651953|ref|ZP_05398855.1| excinuclease ABC subunit B [Clostridium difficile QCD-37x79] gi|306521702|ref|ZP_07408049.1| excinuclease ABC subunit B [Clostridium difficile QCD-32g58] gi|115252472|emb|CAJ70315.1| Excinuclease ABC subunit B [Clostridium difficile] Length = 656 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/655 (53%), Positives = 480/655 (73%), Gaps = 7/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++D+ P+GDQP AI ++ I+ EK LLGVTGSGKTFTMA +I+ +++P ++MA Sbjct: 3 FKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D I++SSVSCIYG+G + Y ++++ ++ G ++ +++ L++ QY+R Sbjct: 123 SATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A R+ FG++++ I+E +TG+ + + I+ Sbjct: 183 DINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNHVVIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A+ I+ EL+ ++ ++ RLLEAQR+EQR YD+EML+ G CQ Sbjct: 243 PASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEIGFCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD RK +L E Sbjct: 303 GIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTSLIEN 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +E++ + I EQIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLDPIVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT YL E I+V+Y+HS++ TLE Sbjct: 422 VRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDIVTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS+T+LIQTIGRAAR Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N N +VI+YAD IT S+Q AIDET RRR+ Q +N++HNI P+++++ I + I+ + E Sbjct: 542 NENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKNIRDSIEATKVAE 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + IS D K + +A++ L+ +M AA NL FE AA +RD++K+L+ Sbjct: 602 EEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 651 >gi|118587561|ref|ZP_01544985.1| excinuclease ABC, B subunit [Oenococcus oeni ATCC BAA-1163] gi|118432012|gb|EAV38754.1| excinuclease ABC, B subunit [Oenococcus oeni ATCC BAA-1163] Length = 673 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/665 (52%), Positives = 472/665 (70%), Gaps = 17/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL++G++ K Q+LLG TG+GKTFT++ VI ++ +P ++++ Sbjct: 11 FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+ Sbjct: 71 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL RND IVV+SVS I+G+G Y ++ L+ GD + L+ L+ QY R Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ + + I I+ Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T L +A I++E++ + + E++G+LLEAQRL+QR YD+EML G Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+DSLL VDESHVT+PQ+ GMY GD RK TL +Y Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDSLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +EL + I EQIIRPTGL+DP + Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R R Q++D+ EIN A + R+ +T LTKRM+EDLT YL E ++V+Y+HS++KTL Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIR+LRLGKFD LVGINLLREGLD+PE LVAILDADK+GFLR++ SLIQTIGRAA Sbjct: 491 ERTEIIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD +T+++Q AIDET RRR Q+++N++HNI P ++K++I I Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSI------ 604 Query: 740 DAATTNI-SIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A + + S D +L L+K K K + +L +QM AA ++FEEAA++RD I Sbjct: 605 -AISHEVQSADESKLDLTKVAFADMPIKDQKEMVGNLTEQMKSAAKRMDFEEAAQLRDSI 663 Query: 791 KRLKS 795 LK+ Sbjct: 664 LELKT 668 >gi|260584667|ref|ZP_05852413.1| excinuclease ABC subunit B [Granulicatella elegans ATCC 700633] gi|260157690|gb|EEW92760.1| excinuclease ABC subunit B [Granulicatella elegans ATCC 700633] Length = 658 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/656 (53%), Positives = 472/656 (71%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+ GI + Q LLG TG+GKTFT+A VI+ + +P +V+A Sbjct: 4 FELHSPYQPQGDQPQAIKELVSGILEGKHEQTLLGATGTGKTFTIANVIKEVNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEKESS+N++ID++RH Sbjct: 64 HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKESSVNDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+ + E+Y + ++ L+ G VE+ +LL+ LV+ Q++R Sbjct: 124 SATSALLERRDVIVVASVSCIYGLVNPENYREHVLSLREGMEVERNQLLTRLVEMQFERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG+FRV GD ++IFP + A RV FG++IE + E LTG+ VE + I+ Sbjct: 184 DIDFRRGSFRVRGDIVDIFPPGHDSSAIRVEFFGDEIEALKEIDVLTGEVKATVEHVPIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V+ ++ A+ IK ELK RL EL + +LLEAQRLEQR YD+EML G C Sbjct: 244 PAAHFVSNEDEISRAVSTIKAELKERLEELRENNQLLEAQRLEQRTNYDIEMLLEMGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ PED+L VDESH+T+ QI M+ GD RK L +Y Sbjct: 304 GIENYSRHMDGRKPGEAPYTLLDFFPEDALYVVDESHITMSQIRAMFNGDRARKEQLIQY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ P I VSATPG +E+ + EQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLRFEEFEERIPQMIYVSATPGPYEMAHTP-TVTEQIIRPTGLLDPLIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R+ +T LTK+M+EDLT+YL E IRV+Y+HS++KTLE Sbjct: 423 VRPINGQIDDLIREIHDRIEKNERVFITTLTKKMSEDLTDYLKEVGIRVKYLHSDIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 483 RTEIIRNLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N N +VI+YAD IT S++ AIDET RRR Q +NK+H I P+++ + I ++I +E Sbjct: 543 NANGRVIMYADKITDSMKYAIDETNRRRSIQEAYNKEHGITPKTIHKNIRDLIAITHAVE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 TT D +Q+++ +++ + L +M AA +LNFE+AA++RD I L++ Sbjct: 603 KEETT--QTDFKQMTVQQRREAIEVMEL--EMRAAAKDLNFEKAAQLRDMILELRA 654 >gi|239940423|ref|ZP_04692360.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998] gi|239986904|ref|ZP_04707568.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 11379] gi|291443854|ref|ZP_06583244.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998] gi|291346801|gb|EFE73705.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998] Length = 713 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/697 (51%), Positives = 480/697 (68%), Gaps = 52/697 (7%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 14 FEVVSPYQPSGDQPTAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH Sbjct: 74 PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ + Y +VQLK+G+ +++ +LL V+ QY R Sbjct: 134 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I T+ ++ Sbjct: 194 DLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIENLSTLHPLTGEIISEDPTVHVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL ELEK+G++LEAQRL R TYD+EML G+C Sbjct: 253 PASHYVAGPERMERAVTGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS + R PG P TL +Y P+D LL +DESHVT+PQI MY GD RK TL ++ Sbjct: 313 GVENYSMHFDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ T+ +SATPG +EL + G VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLKWEEFLKRIDQTVYLSATPGKYELSRGDG-FVEQIIRPTGLVDPEVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VRY+HS+V TL Sbjct: 432 VKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMAEDLTDYFLELGIQVRYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADK+GFLRS TSLIQTIGRAAR Sbjct: 492 RIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T +++ AIDET RRREKQ+ +N + I+PQ +++KI +++ I E+ Sbjct: 552 NVSGQVHMYADKVTPAMEQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREE 611 Query: 741 AATTNISIDAQQ-LSLSKKKGK-------------------------------------- 761 ID +Q L ++GK Sbjct: 612 -------IDTEQLLGTGYRQGKETKAPVPALGGKAARGGAKGAAKGKAAKSGAVTGDRPA 664 Query: 762 ----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA +L FE AAR+RDE+ LK Sbjct: 665 TELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELK 701 >gi|237741137|ref|ZP_04571618.1| excinuclease ABC subunit B [Fusobacterium sp. 4_1_13] gi|229430669|gb|EEO40881.1| excinuclease ABC subunit B [Fusobacterium sp. 4_1_13] Length = 663 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/659 (52%), Positives = 481/659 (72%), Gaps = 16/659 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ + Y P+GDQPAAI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRPA++ Sbjct: 4 NLFKIHSYYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ L+ +Y Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKKTGISRKELMKKLIALRYD 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R DI RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + +K IK++LK+ + + E + +LLEAQRL+QR YDLEM+ G Sbjct: 243 VIYPATQYLTADNDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD RK +L Sbjct: 303 YCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595 Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790 ED + I+ ++ +KK + KA ++ L K++ + L+FE+A +RDE+ Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653 >gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533] gi|81832263|sp|Q74K90|UVRB_LACJO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|41583074|gb|AAS08684.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533] Length = 671 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V L G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+N ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI E Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSE 608 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D D L+KK+ + +K+L QM AA L+FEEAA +RD I LK Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663 >gi|16804527|ref|NP_466012.1| excinuclease ABC subunit B [Listeria monocytogenes EGD-e] gi|47096081|ref|ZP_00233682.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|116873853|ref|YP_850634.1| excinuclease ABC subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|224499846|ref|ZP_03668195.1| excinuclease ABC subunit B [Listeria monocytogenes Finland 1988] gi|224503270|ref|ZP_03671577.1| excinuclease ABC subunit B [Listeria monocytogenes FSL R2-561] gi|254828064|ref|ZP_05232751.1| uvrB [Listeria monocytogenes FSL N3-165] gi|254831088|ref|ZP_05235743.1| excinuclease ABC subunit B [Listeria monocytogenes 10403S] gi|254900373|ref|ZP_05260297.1| excinuclease ABC subunit B [Listeria monocytogenes J0161] gi|254913388|ref|ZP_05263400.1| UvrABC system protein B [Listeria monocytogenes J2818] gi|254937769|ref|ZP_05269466.1| uvrB [Listeria monocytogenes F6900] gi|284802927|ref|YP_003414792.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5578] gi|284996068|ref|YP_003417836.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5923] gi|21542281|sp|Q8Y4F5|UVRB_LISMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|16411977|emb|CAD00567.1| excinuclease ABC (subunit B) [Listeria monocytogenes EGD-e] gi|47015542|gb|EAL06474.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|116742731|emb|CAK21855.1| excinuclease ABC subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|258600448|gb|EEW13773.1| uvrB [Listeria monocytogenes FSL N3-165] gi|258610372|gb|EEW22980.1| uvrB [Listeria monocytogenes F6900] gi|284058489|gb|ADB69430.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5578] gi|284061535|gb|ADB72474.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5923] gi|293591394|gb|EFF99728.1| UvrABC system protein B [Listeria monocytogenes J2818] Length = 658 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 471/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I E + I+ Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ IK EL+ RL L + +LLEAQRLEQR YDLEM+E G C Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLE Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I +I Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---S 600 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA ++ LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 601 AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656 >gi|253575922|ref|ZP_04853256.1| excinuclease ABC, B subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251844716|gb|EES72730.1| excinuclease ABC, B subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 664 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 474/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y GDQP A+ QL++G+ + +K Q LLG TG+GKTFT+A I + RP +V+A Sbjct: 11 FELISEYTLQGDQPEAVRQLVEGVLAGKKHQTLLGATGTGKTFTIANTIAKLGRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH Sbjct: 71 HNKTLAAQLASEFREFFPKNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +++ L++G + ++LS LV QY+R Sbjct: 131 SATSALFERRDVIIVASVSCIYGLGSPMEYRNLVLSLRVGMEKPRNQILSRLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +RGTFRV GD +EIFP+ + A RV FG++IE I+E LTG+ + E + I+ Sbjct: 191 DINFVRGTFRVRGDVLEIFPASHGEKAIRVEFFGDEIERITEIDVLTGELVGEREHVAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A++ I+ EL+ RL E +G+LLEAQRLEQR YD+EM+ G C Sbjct: 251 PASHFVTQEETMKIALQNIERELEERLAEFRAQGKLLEAQRLEQRTRYDIEMMREVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L E+ Sbjct: 311 GIENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +ELE C +VEQIIRPTGL+DP +E Sbjct: 371 GFRLPSALDNRPLRFEEFEEKATQLIYVSATPGPYELEHCD-TMVEQIIRPTGLLDPVIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTK+MAEDLT+YL E I+VRY+HS++KTLE Sbjct: 430 VRPTKGQIDDLIGEIRDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLRLG F VL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RMSILRDLRLGTFHVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +V++YADTIT+S+ AI ET RRR+ Q+ +N+KH I PQ++++K+ +VI+ + + Sbjct: 550 NADGRVLMYADTITESMDKAIKETERRRKIQIAYNEKHGITPQTIRKKVRDVIEATKVAE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ DA+ +SK+ +A + L +M AA NL FE AA +RD I L++ Sbjct: 610 SKADYLA-DAKG-KMSKRDREAMIARLEAEMKEAAKNLQFERAAELRDAILELRA 662 >gi|296119666|ref|ZP_06838224.1| excinuclease ABC subunit B [Corynebacterium ammoniagenes DSM 20306] gi|295967549|gb|EFG80816.1| excinuclease ABC subunit B [Corynebacterium ammoniagenes DSM 20306] Length = 695 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/669 (53%), Positives = 481/669 (71%), Gaps = 7/669 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIA+L ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISEYEPAGDQPTAIAELDHRLNEGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E K P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELKQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V L I D VE+ +LL LV QY+R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVLLHIDDEVERDQLLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFRV GD ++I P++ E+ A R+ FG+DI+ + +P+TG + V+ ++I+ Sbjct: 208 DVGFTRGTFRVNGDIVDIIPAY-EERAVRIEFFGDDIDALYYIHPVTGDTLEQVDELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVQAIKEELAERLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHMDGRGPGTAPATLMDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ +SATPG++E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTFDEFEQRVGQTVYLSATPGNYEVAAAGGEYVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DE+ ++ R+L+T LTKRMAEDLT+YL E IRVRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIDEVRERTKKNERVLVTTLTKRMAEDLTDYLLEHGIRVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RIELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +VI+YAD +T+S++ AIDET RRR KQ+ +N++ ++PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKVTESMERAIDETERRRAKQIAYNEEMGLDPQPLRKKIADILDQVYENE 626 Query: 740 -DAATTNISI-DAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D + SI D +S ++ + ++ + L +QM AA L FE A R+RDEI LK Sbjct: 627 GDGESDPASIVDKPDVSTMAADEVQSLIDDLSQQMAAAARELKFELAGRLRDEIADLKKE 686 Query: 797 PYFQGLDDS 805 +GL D+ Sbjct: 687 R--RGLKDA 693 >gi|326693263|ref|ZP_08230268.1| excinuclease ABC subunit B [Leuconostoc argentinum KCTC 3773] Length = 667 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/659 (51%), Positives = 471/659 (71%), Gaps = 7/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL++GI++ K Q+LLG TG+GKTFT++ VI+ +++P +V++ Sbjct: 10 FEVVSKYEPTGDQPKAIDQLVRGINAGVKEQILLGATGTGKTFTISNVIQRVKKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA Q+Y E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+ Sbjct: 70 HNKTLAGQIYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL RND IVV+SVS I+G+G Y + ++ L++G+ +++L+ L+ Q+ R Sbjct: 130 SATSSLLSRNDVIVVASVSSIFGLGDPHQYQEHVINLRVGNEYGREQLMRDLIDVQFTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ +++A RV FG++I+ I E LTG+ + + + IY Sbjct: 190 DIDFHRGTFRVRGDIMEIFPASEDEMALRVEFFGDEIDRIREINSLTGETVAERDFVAIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T + A+ I +E+ ++ + E EG+L+EAQR++QR YDL MLE G Sbjct: 250 PAKHFMTNDDQMRYALAGINDEMTAQVAKFEAEGKLIEAQRIKQRTEYDLAMLEEMGFVG 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D L+ DESHVT+PQI GM+ GD RK TL Y Sbjct: 310 GIENYSRWMDGRQPGEPPFTLLDFFPDDFLIVADESHVTMPQIRGMFNGDKARKETLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +ELE+ + EQIIRPTGL+DP V Sbjct: 370 GFRLPSALDNRPLKLPEFEQRVNQIIYMSATPGDYELERVTPDHVAEQIIRPTGLLDPEV 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN ++ R+ +T LTKRMAEDLT+YL ++V Y+H+++KTL Sbjct: 430 EVRPVMGQIDDLVGEINQRVEKNERVFITTLTKRMAEDLTDYLKNVGLKVAYLHADIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLGK+DVL+GINLLREG+D+PE LVAILDADKEGFLR+ SLIQTIGRAA Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD +T+S+Q AIDET RRRE QL++N H I P ++K+ I ++I + Sbjct: 550 RNANGHVIMYADKMTRSMQEAIDETARRREIQLQYNATHGITPMTIKKPIRDLIS---VR 606 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 TT ID Q++ L K + K + +L QM AA L+FEEAA++RD + LK+ Sbjct: 607 TETTTGEKIDLTQVAFKDLPKDEQKNIIANLENQMKAAAKALDFEEAAQLRDSVMSLKA 665 >gi|304314599|ref|YP_003849746.1| excinuclease ABC, subunit B [Methanothermobacter marburgensis str. Marburg] gi|302588058|gb|ADL58433.1| excinuclease ABC, subunit B [Methanothermobacter marburgensis str. Marburg] Length = 647 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/656 (54%), Positives = 474/656 (72%), Gaps = 14/656 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI L++GI++ + Q LLGVTGSGKTFT+A VIE +Q+P +V++ Sbjct: 3 FKLVSDYRPLGDQPKAIRSLVEGINAGMREQTLLGVTGSGKTFTIANVIEEVQKPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP NAVEYFVSYYD+YQPEAY+P+TDTYI+KE+SIN++IDRMRH Sbjct: 63 HNKTLAAQLYEEFREFFPDNAVEYFVSYYDFYQPEAYIPQTDTYIDKEASINDEIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R+D IVVSSVSCIYGIG+ Y + + L++G S+ ++E+LSSLV QY+R Sbjct: 123 SATQALLSRDDVIVVSSVSCIYGIGAPADYGEFTLHLEVGSSIGREEILSSLVSMQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+IEI P H R+ +FG++++ IS + +TG++++ ++ I ++ Sbjct: 183 DVEFDRGQFRVRGDTIEINPIH-GTPPIRIELFGDEVDSISTVHRVTGKRLQKLDRITVF 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P L A++ I+EEL+ RL EL + +LLEAQRLEQR +D+EML G CQ Sbjct: 242 PAKHFVIPEDRLQRAIESIEEELEDRLRELRAQNKLLEAQRLEQRTRFDIEMLREMGYCQ 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+GR GE P TL +Y P+D L +DESHVT+PQI GMY GD RK TL EY Sbjct: 302 GIENYSMHLSGRKWGEKPNTLLDYFPDDFLTVIDESHVTVPQIRGMYNGDRARKETLVEY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ I VSATPG +EL + Q IVEQIIRPTGLVDP V Sbjct: 362 GFRLPSAKENRPLRFDEFQESINQVIYVSATPGKYELSRSQN-IVEQIIRPTGLVDPEVR 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+D+ EI + G R+L+T LTKRMAEDLT+Y +RVRY+HSE+ TLE Sbjct: 421 IRPVKGQVDDLLSEIRRRVELGQRVLVTTLTKRMAEDLTDYYSRVGVRVRYLHSEIDTLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR G+FD LVG+NLLREGLD+PE LVAILDAD+EGFLRS+TSLIQTIGRAAR Sbjct: 481 RVEIIDDLRRGEFDCLVGVNLLREGLDLPEVSLVAILDADREGFLRSETSLIQTIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V++YAD +T +++ A++ T RRR+ Q+E+N++H I P+S + + Sbjct: 541 NVNGQVLIYADRLTDAVKAAVETTNRRRKLQMEYNRRHGIKPRSTRRTL----------- 589 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + + + + + +K L +M AA NL FE AAR+RD+I LK S Sbjct: 590 -REKKEKEEIKAEEIPRDELEVIIKDLEAEMREAARNLEFERAARLRDQIMSLKGS 644 >gi|30265192|ref|NP_847569.1| excinuclease ABC subunit B [Bacillus anthracis str. Ames] gi|47530708|ref|YP_022057.1| excinuclease ABC subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49188002|ref|YP_031255.1| excinuclease ABC subunit B [Bacillus anthracis str. Sterne] gi|165869973|ref|ZP_02214630.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0488] gi|167635308|ref|ZP_02393623.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0442] gi|167640500|ref|ZP_02398763.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0193] gi|170688009|ref|ZP_02879222.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0465] gi|170707782|ref|ZP_02898233.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0389] gi|177652930|ref|ZP_02935257.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0174] gi|227817925|ref|YP_002817934.1| excinuclease ABC, B subunit [Bacillus anthracis str. CDC 684] gi|229124671|ref|ZP_04253852.1| UvrABC system protein B [Bacillus cereus 95/8201] gi|229602325|ref|YP_002869386.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0248] gi|254686407|ref|ZP_05150266.1| excinuclease ABC subunit B [Bacillus anthracis str. CNEVA-9066] gi|254724407|ref|ZP_05186191.1| excinuclease ABC subunit B [Bacillus anthracis str. A1055] gi|254735613|ref|ZP_05193320.1| excinuclease ABC subunit B [Bacillus anthracis str. Western North America USA6153] gi|254744300|ref|ZP_05201980.1| excinuclease ABC subunit B [Bacillus anthracis str. Kruger B] gi|254755598|ref|ZP_05207631.1| excinuclease ABC subunit B [Bacillus anthracis str. Vollum] gi|254757053|ref|ZP_05209081.1| excinuclease ABC subunit B [Bacillus anthracis str. Australia 94] gi|81837855|sp|Q81X47|UVRB_BACAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|30259869|gb|AAP29055.1| excinuclease ABC, B subunit [Bacillus anthracis str. Ames] gi|47505856|gb|AAT34532.1| excinuclease ABC, B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49181929|gb|AAT57305.1| excinuclease ABC, B subunit [Bacillus anthracis str. Sterne] gi|164714296|gb|EDR19816.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0488] gi|167511543|gb|EDR86926.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0193] gi|167529351|gb|EDR92103.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0442] gi|170127339|gb|EDS96215.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0389] gi|170668118|gb|EDT18868.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0465] gi|172081705|gb|EDT66775.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0174] gi|227002808|gb|ACP12551.1| excinuclease ABC, B subunit [Bacillus anthracis str. CDC 684] gi|228658766|gb|EEL14425.1| UvrABC system protein B [Bacillus cereus 95/8201] gi|229266733|gb|ACQ48370.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0248] Length = 658 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|65317138|ref|ZP_00390097.1| COG0556: Helicase subunit of the DNA excision repair complex [Bacillus anthracis str. A2012] Length = 669 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 16 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 75 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 76 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 135 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 136 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 196 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 255 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 256 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 315 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 316 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 375 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 376 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 435 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 495 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 554 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 555 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 614 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 615 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 667 >gi|47092775|ref|ZP_00230560.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 4b H7858] gi|217963409|ref|YP_002349087.1| excinuclease ABC, B subunit [Listeria monocytogenes HCC23] gi|226225037|ref|YP_002759144.1| excinuclease ABC (subunit B) [Listeria monocytogenes Clip81459] gi|254825389|ref|ZP_05230390.1| excinuclease ABC [Listeria monocytogenes FSL J1-194] gi|254853509|ref|ZP_05242857.1| excinuclease ABC [Listeria monocytogenes FSL R2-503] gi|254932270|ref|ZP_05265629.1| excinuclease ABC [Listeria monocytogenes HPB2262] gi|255521889|ref|ZP_05389126.1| excinuclease ABC subunit B [Listeria monocytogenes FSL J1-175] gi|290892652|ref|ZP_06555644.1| excinuclease ABC [Listeria monocytogenes FSL J2-071] gi|300765012|ref|ZP_07075000.1| excinuclease ABC, B subunit [Listeria monocytogenes FSL N1-017] gi|47018863|gb|EAL09611.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 4b H7858] gi|217332679|gb|ACK38473.1| excinuclease ABC, B subunit [Listeria monocytogenes HCC23] gi|225877499|emb|CAS06213.1| excinuclease ABC (subunit B) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606881|gb|EEW19489.1| excinuclease ABC [Listeria monocytogenes FSL R2-503] gi|290557712|gb|EFD91234.1| excinuclease ABC [Listeria monocytogenes FSL J2-071] gi|293583827|gb|EFF95859.1| excinuclease ABC [Listeria monocytogenes HPB2262] gi|293594632|gb|EFG02393.1| excinuclease ABC [Listeria monocytogenes FSL J1-194] gi|300514312|gb|EFK41371.1| excinuclease ABC, B subunit [Listeria monocytogenes FSL N1-017] gi|307572016|emb|CAR85195.1| excinuclease ABC, subunit B [Listeria monocytogenes L99] gi|328471293|gb|EGF42193.1| excinuclease ABC subunit B [Listeria monocytogenes 220] gi|332312919|gb|EGJ26014.1| UvrABC system protein B [Listeria monocytogenes str. Scott A] Length = 658 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 471/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I E + I+ Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ IK EL+ RL L + +LLEAQRLEQR YDLEM+E G C Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLE Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I +I Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---S 600 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA ++ LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 601 AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656 >gi|16801694|ref|NP_471962.1| excinuclease ABC subunit B [Listeria innocua Clip11262] gi|21542285|sp|Q928A4|UVRB_LISIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|16415169|emb|CAC97859.1| excinuclease ABC (subunit B) [Listeria innocua Clip11262] Length = 658 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 472/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I + E + I+ Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ IK EL+ RL L E +LLEAQRLEQR YD+EM+E G C Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDIEMMEEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQIVIDESHVTMPQIRGMFNGDQARKQMLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLE Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I +I Sbjct: 544 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAAT---S 600 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA +I LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 601 AADEREAIKQHDLSKMSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656 >gi|229032779|ref|ZP_04188737.1| UvrABC system protein B [Bacillus cereus AH1271] gi|228728547|gb|EEL79565.1| UvrABC system protein B [Bacillus cereus AH1271] Length = 658 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +NK+H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|87123270|ref|ZP_01079121.1| excinuclease ABC, B subunit [Synechococcus sp. RS9917] gi|86168990|gb|EAQ70246.1| excinuclease ABC, B subunit [Synechococcus sp. RS9917] Length = 678 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/670 (53%), Positives = 463/670 (69%), Gaps = 18/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P GDQP AI QL++G++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 FELSAPYSPKGDQPTAIQQLVEGVNGGERFQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++GD++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGDTLNIRAQLRDLVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ +D R+ +FG+++E I P TG+ ++++E + IY Sbjct: 184 DTEIARGRFRIKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEAVNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L+ A+K I+ ELK RL L EG+LLEAQRLEQR TYDLEML+ G C Sbjct: 243 PAKHFVTPKDRLDVAIKAIRRELKERLEVLHSEGKLLEAQRLEQRTTYDLEMLQQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLAGREAGSPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ EE W R ++ VSATPG WEL+ +G + EQ+IRPTG++DP V Sbjct: 363 GFRLPSAADNRPLKGEEFWQKAR-QSVFVSATPGDWELKVSKGQVAEQVIRPTGVLDPIV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++ Sbjct: 422 EVRPTTGQVDDLLGEIRSRAAKQQRVLVTTLTKRMAEDLTDYLAEHEVRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 R+V +LYADT+T S+ AI+ET RRR+ Q +N+KH I P + +K I L Sbjct: 542 RHVEGVALLYADTMTDSMAKAIEETERRRKIQQAYNEKHGIVPTAAGKKASNSILSFLEL 601 Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAA 784 DA ++ A Q +G A ++ L +M AA L+FEEAA Sbjct: 602 SRKLKSEGPDADLVQVAGKAVQALEDDAEGMALDALPELIEQLEAKMKEAAKKLDFEEAA 661 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 662 NLRDRIKQLR 671 >gi|319891759|ref|YP_004148634.1| Excinuclease ABC subunit B [Staphylococcus pseudintermedius HKU10-03] gi|317161455|gb|ADV04998.1| Excinuclease ABC subunit B [Staphylococcus pseudintermedius HKU10-03] gi|323465072|gb|ADX77225.1| excinuclease ABC subunit B [Staphylococcus pseudintermedius ED99] Length = 660 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 471/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI L+KGI ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 6 FKIASNFEPQGDQPQAIKALVKGIEEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 66 HNKTLAGQLYSEFKTFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ + Y ++V +++G +++ ELL LV QY R Sbjct: 126 SATSALFERDDVIIIASVSCIYGLGNPDEYRDLVVSIRVGMEMDRSELLRKLVDVQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++++ ISE LTG+ ++ E ++ Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASREELCIRVEFFGDEVDRISEINYLTGEVLKEREHFALF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ +L L E +LLEAQRLEQR YDLEM+ G Sbjct: 246 PASHFVTREEKMKIAIERIEKELEEQLAYLRSENKLLEAQRLEQRTNYDLEMMREMGFTS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L E+ Sbjct: 306 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQIRGMYNGDQARKQVLVEH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +I EQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFEQKAKQLVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPKIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI +QG R+L+T LTK+M+EDLT YL E ++V Y+HSE+KTLE Sbjct: 425 VRPTKNQIDDLLSEIQERTEQGERVLITTLTKKMSEDLTTYLKEAGVKVNYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G FDVL+GINLLREGLDIPE LV ILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 485 RIEIIRDLRMGTFDVLIGINLLREGLDIPEVSLVVILDADKEGFLRSERSLIQTMGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++AIDET RRRE Q+ +N+KH I P+++ ++I +VI + D Sbjct: 545 NDKGHVIMYADRITDSMKVAIDETERRREIQIAYNEKHGIVPKTINKEIHDVISATVETD 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + ++KK+ + ++++ K+M AA L+FE A +RD + LKS Sbjct: 605 ETNEDQRKEVPK-KMTKKEREKTIENVEKEMKEAAKALDFERATELRDLLFELKS 658 >gi|297620436|ref|YP_003708573.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044] gi|297375737|gb|ADI37567.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044] Length = 668 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/661 (53%), Positives = 463/661 (70%), Gaps = 17/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ TDY P GDQP AI +L GI K Q+LLG+TGSGKTFTMA VI+ +QRP +VMA Sbjct: 3 FKLHTDYQPRGDQPQAIEKLAAGIEEGRKSQVLLGITGSGKTFTMANVIQKVQRPTLVMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+PRTDT+IEK+ SIN++ID+MR Sbjct: 63 HNKTLAAQLYQEFKAFFPENAVEYFVSYYDYYQPEAYIPRTDTFIEKDMSINDRIDKMRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D ++V+SVSCIYG+GS E Y M + +K G + +LL LV+ QYKR Sbjct: 123 SATRSLLEREDVLIVASVSCIYGLGSPEYYRGMNLHIKTGVEYRRDDLLLHLVEMQYKRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV G+ I+IFP++ ED+A R+ FG+++E ++E PLTG+ IR ++ IY Sbjct: 183 DYDFFRATFRVRGEIIDIFPAYEEDLALRLEFFGDELERLTEIDPLTGKMIRLIDEATIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SH+VTP A++ IK EL+ R+ ++E +L+E QR+++R YDLEM++ G C+ Sbjct: 243 PSSHHVTPEEIRLQAIETIKAELEERMAYFDREKKLIELQRIQERTRYDLEMIKEVGFCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R G+ P L +Y P + LL VDESH TIPQ+ M+ GD RK +L ++ Sbjct: 303 GIENYSRHFGRREEGQAPSCLLDYFPSNYLLIVDESHQTIPQLHAMFNGDRARKQSLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE + VSATPG WE+++ G++VEQ+IRPTGL+DP +E Sbjct: 363 GFRLPSAYDNRPLRFEETYSRINQVVYVSATPGEWEIKEAAGLLVEQVIRPTGLLDPIIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 R A QV+D DEI +G R+L+T LTKR+AE+LT YL + NI+ +Y+HS++ T+E Sbjct: 423 TRPAVGQVDDALDEIRRETLKGNRVLVTTLTKRLAEELTNYLVDLNIKAKYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II+DLRLG FDVLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT GRAAR Sbjct: 483 RVQIIQDLRLGLFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSETSLIQTCGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+Y D +TKSI I+ T +RR Q N++H I P +VK +I + P Sbjct: 543 NENGRVIMYCDKLTKSICRTIEITEKRRANQEAFNREHGITPHTVKREISSLAVP----- 597 Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRK-------QMHLAADNLNFEEAARIRDE 789 A N+S Q L + + H L+ +RK +M AA + FE+AAR RD+ Sbjct: 598 GAEANVSYPMPQKELMAAE-EPHPYLTLEEVRKKVAEYEGKMKKAAKEMQFEDAARYRDQ 656 Query: 790 I 790 + Sbjct: 657 L 657 >gi|190567660|ref|ZP_03020572.1| excinuclease ABC, B subunit [Bacillus anthracis Tsiankovskii-I] gi|190561076|gb|EDV15049.1| excinuclease ABC, B subunit [Bacillus anthracis Tsiankovskii-I] Length = 658 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDIIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|56750968|ref|YP_171669.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 6301] gi|81299374|ref|YP_399582.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 7942] gi|81820670|sp|Q5N3H1|UVRB_SYNP6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|123557352|sp|Q31QS4|UVRB_SYNE7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56685927|dbj|BAD79149.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 6301] gi|81168255|gb|ABB56595.1| Excinuclease ABC subunit B [Synechococcus elongatus PCC 7942] Length = 666 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/661 (53%), Positives = 468/661 (70%), Gaps = 6/661 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ+Q Y P GDQP AIAQL++ + + Q LLG TG+GKTFT+A VI + RPA+ Sbjct: 1 MTPFQLQARYQPMGDQPTAIAQLVEQVQAGAPYQTLLGATGTGKTFTIANVIAQVGRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYI K +SINE+ID Sbjct: 61 VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATR+L ER D IVV+S+SCIYG+G Y + + L++G + +E+L LV QY Sbjct: 121 LRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPLEVGAEINMREVLRQLVDVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ +++++ + Sbjct: 181 SRNDLESGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRL 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A+ IKEEL +L+ L+ EG+L+EAQRLEQR YDLEML+ G Sbjct: 240 NIYPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENY+R+L GR PG PP L +Y P+D LL VDESHVT+PQ+ GMY GD RK L Sbjct: 300 YCNGVENYARHLAGREPGSPPECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 ++GFRLPS DNRPL+ EE W +R I VSATPG WE+E+ + IVEQ+IRPTG+VD Sbjct: 360 VDHGFRLPSAADNRPLKSEEFWEKVR-QCIFVSATPGDWEIERSEEQIVEQVIRPTGVVD 418 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P V +R QV+D+ EI ++ R L+T LTKRMAEDLT+YL +R ++VRY+HSE+ Sbjct: 419 PEVFVRPTEGQVDDLLAEIQQRVRRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEI 478 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 ++ERIEI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIG Sbjct: 479 NSIERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIG 538 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAAR++N + ILYAD +T+S++ AI ET RRR QL++N++HNI PQ + ++ I Sbjct: 539 RAARHINGQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSF 598 Query: 737 LLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L ++ +Q LS ++ + L QM AA NL FEEAA+ RD IK+L Sbjct: 599 LEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAAKNLEFEEAAQYRDRIKKL 658 Query: 794 K 794 + Sbjct: 659 R 659 >gi|296393098|ref|YP_003657982.1| excinuclease ABC subunit B [Segniliparus rotundus DSM 44985] gi|296180245|gb|ADG97151.1| excinuclease ABC, B subunit [Segniliparus rotundus DSM 44985] Length = 706 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/673 (52%), Positives = 473/673 (70%), Gaps = 13/673 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAIA+L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 32 FEVVSEHQPAGDQPAAIAELQRRIEAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH Sbjct: 92 PNKTLAAQLANELREMLPKNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDNVERLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LL R D +VV+SVSCIYG+GS +SY V L G + +LL LV QY R Sbjct: 152 SATRNLLSRRDVVVVASVSCIYGLGSPQSYLDRSVLLTKGQEAGRDKLLRLLVDMQYDRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A RV FG++I+ ++ LTG + NV+ ++I+ Sbjct: 212 DVAFTRGTFRVRGDTVEIIPAY-EELAVRVEFFGDEIDGLAYLNKLTGDVVANVDQVRIF 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+T + M+ I++EL RL LE +G+LLEAQRL R YDLEM++ G C Sbjct: 271 PATHYITGEGRMAQVMEAIRQELAERLAVLEAQGKLLEAQRLRMRTEYDLEMIQQVGFCS 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED L +DESHVT+PQI M+ GD RK L EY Sbjct: 331 GIENYSRHMDGRGPGTAPATLLDYFPEDFLTVIDESHVTVPQIGAMFEGDMARKRNLVEY 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ T+ +SATPG +EL Q G VEQ+IRPTGLVDP + Sbjct: 391 GFRLPSAVDNRPLTWEEFSERVGQTVYLSATPGPYELGQAGGEFVEQVIRPTGLVDPKIV 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 451 VKPTKGQIDDLVHEIRQRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G++DVLVGINLLREGLD+PE LV ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 511 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSTTSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT S++ AIDET RRR KQ+ +N ++ I+P+ +++KI +++D + E Sbjct: 571 NVSGEVHMYADTITDSMRNAIDETERRRAKQIAYNTENGIDPRPLRKKIADILDRVYEES 630 Query: 741 AATTNISIDAQQLSLSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIRDEI 790 T + SKKK A + L +QM AA L FE AAR+RDE+ Sbjct: 631 EDTADAKSAKAPQKPSKKKTSAGTTPRTELVALIDELNEQMLSAARELRFELAARLRDEL 690 Query: 791 KRLKSSPYFQGLD 803 K +G+D Sbjct: 691 AEYKKE--LKGMD 701 >gi|46908661|ref|YP_015050.1| excinuclease ABC subunit B [Listeria monocytogenes serotype 4b str. F2365] gi|67461969|sp|Q71WT9|UVRB_LISMF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|46881933|gb|AAT05227.1| excinuclease ABC, B subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 658 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 471/656 (71%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I E + I+ Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ IK EL+ RL L + +LLEAQRLEQR YDLEM+E G C Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++ Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLE Sbjct: 424 IRPIQGQIDDLMDEINNRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I +I Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---S 600 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AA ++ LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 601 AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656 >gi|268319816|ref|YP_003293472.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus johnsonii FI9785] gi|262398191|emb|CAX67205.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus johnsonii FI9785] Length = 671 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V L G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+N ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I LK Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663 >gi|325570016|ref|ZP_08145941.1| excision endonuclease subunit UvrB [Enterococcus casseliflavus ATCC 12755] gi|325156844|gb|EGC69015.1| excision endonuclease subunit UvrB [Enterococcus casseliflavus ATCC 12755] Length = 665 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/656 (52%), Positives = 469/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +I+ + +P +++A Sbjct: 12 FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 72 HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+GS Y++ +V L++G + +LL L++ Q++R Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I E LTG+ + + E + I+ Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQ+ GMY GD RK L +Y Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLLVIDESHVTMPQVRGMYNGDRARKQMLVDY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E +Q +V+QIIRPTGL+DP +E Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQTD-TVVQQIIRPTGLLDPVIE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+Y E I+V+Y+HS++KTLE Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S+Q AIDET RRR Q +N++H I P+++ ++I ++I + + Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLI--AITKV 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T LS+++ L L K+M AA L+FE AA +RD I LK++ Sbjct: 609 AEETGEYTTTSYEELSREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664 >gi|167968414|ref|ZP_02550691.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra] gi|215426951|ref|ZP_03424870.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T92] gi|260200694|ref|ZP_05768185.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T46] gi|294996582|ref|ZP_06802273.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 210] gi|297634186|ref|ZP_06951966.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN 4207] gi|297731173|ref|ZP_06960291.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN R506] gi|306775819|ref|ZP_07414156.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu001] gi|306779631|ref|ZP_07417968.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu002] gi|306784363|ref|ZP_07422685.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu003] gi|306788731|ref|ZP_07427053.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu004] gi|306793068|ref|ZP_07431370.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu005] gi|306797450|ref|ZP_07435752.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu006] gi|306803328|ref|ZP_07439996.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu008] gi|306807910|ref|ZP_07444578.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu007] gi|306967727|ref|ZP_07480388.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu009] gi|306971925|ref|ZP_07484586.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu010] gi|307079641|ref|ZP_07488811.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu011] gi|307084213|ref|ZP_07493326.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu012] gi|313658505|ref|ZP_07815385.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN V2475] gi|308215734|gb|EFO75133.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu001] gi|308327432|gb|EFP16283.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu002] gi|308330911|gb|EFP19762.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu003] gi|308334746|gb|EFP23597.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu004] gi|308338523|gb|EFP27374.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu005] gi|308342194|gb|EFP31045.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu006] gi|308345720|gb|EFP34571.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu007] gi|308350019|gb|EFP38870.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu008] gi|308354656|gb|EFP43507.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu009] gi|308358612|gb|EFP47463.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu010] gi|308362538|gb|EFP51389.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu011] gi|308366158|gb|EFP55009.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis SUMu012] gi|323719893|gb|EGB29006.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CDC1551A] Length = 719 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 148 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 208 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 327 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 626 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 627 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 686 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 687 AARDLQFELAARFRDEIADLKRE--LRGMD 714 >gi|225574842|ref|ZP_03783452.1| hypothetical protein RUMHYD_02920 [Blautia hydrogenotrophica DSM 10507] gi|225037916|gb|EEG48162.1| hypothetical protein RUMHYD_02920 [Blautia hydrogenotrophica DSM 10507] Length = 669 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/657 (52%), Positives = 474/657 (72%), Gaps = 3/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y P+GDQP AI +L+KG + Q LLGVTGSGKTFTMA VIE +Q+P +++ Sbjct: 7 LFHLVSEYKPTGDQPEAIKKLVKGFKEGNQCQTLLGVTGSGKTFTMANVIEQLQKPTLII 66 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP TDTYI K+SSIN++I+++R Sbjct: 67 AHNKTLAAQLYGEFKEFFPDNSVEYFVSYYDYYQPEAYVPSTDTYIAKDSSINDEIEKLR 126 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT +L ER D I++SSVSCIYG+GS + Y M++ L+ G + ++ E++ L+ QY R Sbjct: 127 LSATAALSERRDVIIISSVSCIYGLGSPDDYQNMVISLRPGMTKDRDEVIRQLIDIQYTR 186 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RGTFRV GD +EIFP+ + A RV FG++++ ISE LTG+ + I + Sbjct: 187 NEMDFQRGTFRVRGDVLEIFPADYSESAIRVEFFGDEVDRISEVDVLTGEIKCELNHIAV 246 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHYV P + A I++EL R+ + E +LLEAQR+ +R +D+EM++ TG C Sbjct: 247 FPASHYVVPMEQILKAADEIEKELAQRVSYFKGEDKLLEAQRISERTNFDVEMMKETGFC 306 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L+G PGEPP TL +Y +D L+ +DESH T+PQI GMY GD RK TL + Sbjct: 307 SGIENYSRHLSGLAPGEPPYTLVDYFGDDFLIIIDESHKTVPQIRGMYAGDQSRKQTLVD 366 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRPL F+E+ + VSATPG +E E+ + + EQIIRPTGL+DP V Sbjct: 367 YGFRLPSAKDNRPLNFQEFESKIDQILFVSATPGEYE-EEHELLRAEQIIRPTGLLDPKV 425 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ E+N ++ ++L+T LTKRMAEDLT+Y+ + IRV+Y+HS++ TL Sbjct: 426 EVRPVEGQIDDLVSEVNKEVEKHHKVLITTLTKRMAEDLTDYMRDLGIRVKYLHSDIDTL 485 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 486 ERTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAA 545 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN +V++YAD +T S+++AIDET RRR Q +N++H I P+++++ + ++I + + Sbjct: 546 RNSEGRVLMYADVMTDSMRMAIDETERRRALQEAYNQEHGITPKTIQKSVRDLIS--ISK 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T ++ S+SKK+ + ++ + KQM +AA +LNFE+AA++RD++ LK + Sbjct: 604 AVAQTESQLEKDPESMSKKELEKLIQKVEKQMKVAAADLNFEQAAQLRDKMIELKKN 660 >gi|116629946|ref|YP_815118.1| excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323] gi|122273116|sp|Q042E2|UVRB_LACGA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116095528|gb|ABJ60680.1| Excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323] Length = 671 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V + G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISGGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDSARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I L+ Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663 >gi|120404324|ref|YP_954153.1| excinuclease ABC subunit B [Mycobacterium vanbaalenii PYR-1] gi|119957142|gb|ABM14147.1| Excinuclease ABC subunit B [Mycobacterium vanbaalenii PYR-1] Length = 722 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/693 (52%), Positives = 483/693 (69%), Gaps = 33/693 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSEFEPAGDQPAAIDELERRIRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+GD V + LL LV QY R Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDGLLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG++IEE+ +PLTG IR V++++I+ Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTGDIIRKVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMAQAISTIEAELEERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPGS+EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGSYELSQSGGEFVEQVIRPTGLVDPQVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YAD +T S++ AIDET RRR KQ +NK+H I+P+ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKMTDSMKQAIDETERRRAKQTAYNKEHGIDPKPLRKKIADILDQVYREA 626 Query: 740 --DAATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQ 770 A ++ I + S+ + G+A +K L Q Sbjct: 627 DDTEAAESVPIGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSNMPRAELADLIKDLTAQ 686 Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 M AA +L FE AARIRDEI LK +G+D Sbjct: 687 MMAAARDLQFELAARIRDEIADLKKE--LRGMD 717 >gi|289554593|ref|ZP_06443803.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN 605] gi|289439225|gb|EFD21718.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN 605] Length = 711 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 20 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 79 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 80 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 139 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 140 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 199 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 200 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 258 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 259 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 318 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 319 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 378 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 379 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 439 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 499 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 559 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 618 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 619 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 678 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 679 AARDLQFELAARFRDEIADLKRE--LRGMD 706 >gi|149277623|ref|ZP_01883764.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39] gi|149231856|gb|EDM37234.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39] Length = 678 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/664 (52%), Positives = 479/664 (72%), Gaps = 15/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AI QL+ G++S E Q LLGVTGSGKTFT+A VI+ Q+P ++++ Sbjct: 3 FQLVSDYKPTGDQPNAIRQLVDGVNSNEHYQTLLGVTGSGKTFTVANVIQETQKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++P T+TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFMPSTNTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T +L+ R D IVVSS+SCIYG+G+ E +S+ + + +G + + L SLV+ Y R Sbjct: 123 RTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFAVGTRISRNSFLHSLVEILYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++IFP++L D A+RVS FG+DIEE+S P+TG+ + +E + I Sbjct: 183 TTTEFKRGTFRVKGDTVDIFPAYL-DNAYRVSFFGDDIEELSLIDPVTGKTLDKMEDMAI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VTP+ ++++ I+EEL++R +L + LLEA+RLE+R+ +D+EM++ G C Sbjct: 242 YPANLFVTPKDRFSSSIWGIQEELEVRKNQLLGDKHLLEAKRLEERVNFDIEMMKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR+PG P L +Y P+D L+ +DESHVT+PQI MY GD RK +L E Sbjct: 302 SGIENYSRFFDGRSPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKMSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ L P TI VSATP +EL + +GI++EQ+IRPTGL+DP + Sbjct: 362 YGFRLPSALDNRPLNFDEFEGLAPQTIYVSATPADYELHKSEGIVIEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E++ A QV+D+ +EI+ + G RIL+T LTKRMAE+LT+Y+ NI+ RY+HSEVKTL Sbjct: 422 EVKPAINQVDDLLEEIDKTIKMGDRILVTTLTKRMAEELTKYMDRLNIKCRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS +LIQTIGRAA Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736 RN +VI+YAD IT+S++ I ET RRREKQ+ +N +H I P++V +E I+E + Sbjct: 542 RNDRGRVIMYADNITESMERTISETNRRREKQVAYNLEHGIVPKTVGKSREAILEQTSVL 601 Query: 737 LLEDAAT---TNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 AT + +D ++ ++K + + + +K+M AA ++F AAR+ Sbjct: 602 DFSGNATRAKAYVEVDEVSMAADPIVQYMNKGEMQKSIDKTKKEMAKAAKEMDFLLAARL 661 Query: 787 RDEI 790 RDE+ Sbjct: 662 RDEM 665 >gi|172058423|ref|YP_001814883.1| excinuclease ABC, B subunit [Exiguobacterium sibiricum 255-15] gi|171990944|gb|ACB61866.1| excinuclease ABC, B subunit [Exiguobacterium sibiricum 255-15] Length = 655 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/656 (53%), Positives = 464/656 (70%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQP AI +L+ G+ + E+ Q LLG TG+GKTFT++ VI+ +++P +V+A Sbjct: 3 FELVSPFEPGGDQPEAIKKLIAGVKNGERHQTLLGATGTGKTFTVSNVIKEIKKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVS+YDYYQPEAYVP TDT+IEK+SSIN++ID++RH Sbjct: 63 HNKTLAGQLYSEFKEFFPNNAVEYFVSFYDYYQPEAYVPSTDTFIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D ++V+SVSCIYG+G+ E Y+ ++ L++G+ + + E+L L+ QY+R Sbjct: 123 SATASLFEREDVLIVASVSCIYGLGNPEEYNNHVLSLRVGNEMGRNEMLRRLIDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++IE I + PLTG+ I + E I I+ Sbjct: 183 DIDFQRGRFRVRGDVVEIFPASRDEQCVRIEFFGDEIERIRDMDPLTGEIIADREHISIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A+ I+ EL+ +L ++ ++G LLEAQRLEQR YDLEM+ G C Sbjct: 243 PASHFVTGDTRLQKAITNIEAELETQLAKMREDGMLLEAQRLEQRTNYDLEMMREMGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L PG P TL +Y P+D LL DESHVT+PQI GMY GD RK L ++ Sbjct: 303 GIENYSRHLNLMPPGSTPYTLIDYFPKDFLLVADESHVTLPQIRGMYNGDQARKQVLVDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ I +SATPG +E+E + +VEQIIRPTGLVDP +E Sbjct: 363 GFRLPSAKDNRPLRFEEFEEKVSQAIYISATPGPYEIEHTKE-MVEQIIRPTGLVDPTIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I Q++ + D I + R+L+T LTK+M+EDLT+YL E ++V YMHSE+KTLE Sbjct: 422 IHPITGQIDYLMDNIRERVAKNERVLVTTLTKKMSEDLTDYLKEHGVKVNYMHSEIKTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 482 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VIL+AD +T S+Q AIDET RRR QL NK+H I P+++++ + VI + D Sbjct: 542 NSEGHVILFADKMTDSMQRAIDETERRRNIQLAFNKEHGITPKTIQKDVRGVISTTIESD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + L K + + L+ L ++M AA ++ FE AA +RD I LK+ Sbjct: 602 DTVEKLE---KFNKLKKPERETLLEQLDQEMRQAAKDMQFERAAELRDLILELKAG 654 >gi|157693900|ref|YP_001488362.1| excinuclease ABC subunit B [Bacillus pumilus SAFR-032] gi|157682658|gb|ABV63802.1| excision endonuclease subunit B [Bacillus pumilus SAFR-032] Length = 661 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L++GIH ++ Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+ +E+ +LL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ +L +L G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMEKAIVNIEQELEEQLEKLRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y P+D ++ VDESHVT+PQI MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTVPQIRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +ELE+ +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPE-VVEQIIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIHARIEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +TKS+ +AI ET RRRE+Q +N+K+ I PQ++ +KI + I + + Sbjct: 544 NSEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHE 603 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + A +LS +SKK+ + ++ + +M AA L+FE+AA +RD + LK+ Sbjct: 604 ESEEYETNAAPKLSKMSKKEREKVIEKVELEMKDAAKALDFEKAAELRDLLLELKA 659 >gi|311110421|ref|ZP_07711818.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22] gi|311065575|gb|EFQ45915.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22] Length = 671 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V + G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISGGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I L+ Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663 >gi|291166446|gb|EFE28492.1| excinuclease ABC subunit B [Filifactor alocis ATCC 35896] Length = 656 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 473/656 (72%), Gaps = 10/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + T Y P+GDQP AI ++ I + K Q LLGVTGSGKTFTMA +I+ Q+P +V+A Sbjct: 4 FNLTTSYQPTGDQPKAIDDMVNSIQQKNKFQTLLGVTGSGKTFTMANIIQQTQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +++ER D I+V+SVSCIYG+G + Y M+V L+ ++ E++ LV+ QY+R Sbjct: 124 SATAAVIERRDVIIVASVSCIYGLGDPDDYRYMMVSLRPQMIKDRDEVIKQLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD +EI P++ + RV FG++IE I E LTG+ I + I+ Sbjct: 184 DINFIRGTFRVRGDILEIMPANTDIKGLRVEFFGDEIERIVEIDHLTGEIIGELRQASIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + L A+ I +EL+ RL + LLEAQRLEQR YD+EML G+C+ Sbjct: 244 PASHYVTTKEKLEQAIVGIGKELQERLQYFRENNFLLEAQRLEQRTMYDIEMLREIGTCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR GE TL ++ +D L+ VDESH TIPQ++ MY GD RK +L +Y Sbjct: 304 GIENYSRHLTGRKAGERAFTLMDFFDDDYLIIVDESHATIPQLNAMYSGDRARKESLIDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPP 558 GFRLPS DNRPL+FEE+ + + VSATPG +E+E C G EQIIRPTGL+DP Sbjct: 364 GFRLPSAADNRPLKFEEFEGMINQILFVSATPGKYEMEHSSCFG---EQIIRPTGLLDPV 420 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R Q++D+ EI Q+ R+L+T LTK+MAE LT+YL + I V Y+HS+V+T Sbjct: 421 IEVRPIDGQIDDLLHEIQNTVQKNERVLVTTLTKKMAESLTDYLKQAGILVEYLHSDVET 480 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LERI +IR+LRLG+F VLVGINLLREGLDIPE LVAILDADKEGFLRS+TS+IQTIGRA Sbjct: 481 LERIRLIRNLRLGEFHVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSMIQTIGRA 540 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN + +VI+YADTITKS++ AIDET+RRRE Q +N++H I P+++ +++ + I ++ Sbjct: 541 ARNADGRVIMYADTITKSMKSAIDETSRRREIQNRYNEEHGIVPKTINKEVRQEISMLVA 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E T ++ + +S+++ ++ L++QM AA+NLNFE+AA RD I +L+ Sbjct: 601 EKEETYSV-----KEVISRQELIEKIEVLKEQMLEAAENLNFEQAAIYRDSILQLE 651 >gi|52145209|ref|YP_086431.1| excinuclease ABC subunit B [Bacillus cereus E33L] gi|81824124|sp|Q631I6|UVRB_BACCZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|51978678|gb|AAU20228.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus cereus E33L] Length = 658 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N+++ I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEYGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|302546273|ref|ZP_07298615.1| excinuclease ABC subunit B [Streptomyces hygroscopicus ATCC 53653] gi|302463891|gb|EFL26984.1| excinuclease ABC subunit B [Streptomyces himastatinicus ATCC 53653] Length = 720 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/694 (50%), Positives = 477/694 (68%), Gaps = 37/694 (5%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 + + F++ + Y PSGDQP AIA L + I EK +LLG TG+GK+ T A +IE +QRP Sbjct: 17 RKVAPFEVVSPYTPSGDQPTAIADLDRRISGGEKDVVLLGATGTGKSATTAWMIEKLQRP 76 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++ Sbjct: 77 TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 136 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+G+ ++ +LL V Sbjct: 137 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEETDRDQLLRRFVDI 196 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I + + Sbjct: 197 QYARNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEVISDDQ 255 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ SHYV + A+ I+ EL+ L LEK+G+LLEAQRL R TYD+EM+ Sbjct: 256 ELYVFPASHYVAGPERMEKAIAGIEAELEQTLARLEKQGKLLEAQRLRMRTTYDIEMMRQ 315 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G+C IENYS ++ GR G PP TL +Y PED LL +DESHVT+PQI MY GD RK Sbjct: 316 IGTCSGIENYSLHIDGREAGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 375 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL E+GFRLPS +DNRPL++EE+ T+ +SATPG++E+ + G VEQIIRPTGLV Sbjct: 376 TLIEHGFRLPSALDNRPLKWEEFQKRIGQTVYLSATPGTYEMSRGDG-FVEQIIRPTGLV 434 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y+ E I+VRY+HS+ Sbjct: 435 DPEVVVKPTDGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQVRYLHSD 494 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTI Sbjct: 495 VDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 554 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ +V +YAD +T +++ AIDET RRREKQ+ N+K+ I+PQ +++KI +++ Sbjct: 555 GRAARNVSGQVHMYADKVTPAMEKAIDETNRRREKQIAFNEKNGIDPQPLRKKIGDIVAT 614 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAH-------------------------------- 763 + E+ T + + S + KG Sbjct: 615 LAREEIDTKELLETGYRKSADQGKGAGKGQKAPMPALASHKAGGKGAKDGELTDRPAAEL 674 Query: 764 ---LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA L FE AAR+RDE+ LK Sbjct: 675 AELIEEMTDRMKAAAAELQFEVAARLRDEVGELK 708 >gi|313904913|ref|ZP_07838284.1| excinuclease ABC, B subunit [Eubacterium cellulosolvens 6] gi|313470170|gb|EFR65501.1| excinuclease ABC, B subunit [Eubacterium cellulosolvens 6] Length = 661 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/656 (53%), Positives = 472/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+ G S + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEYKPTGDQPQAIRELVDGFRSGNQCETLLGVTGSGKTFTMANVIQELQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS NE+ID++R Sbjct: 63 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSRNEEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IV+SSVSCIYG+GS + Y +MI+ L+ G ++ +++ +L+ QY+R Sbjct: 123 SATSSLIERKDVIVISSVSCIYGLGSPKDYEKMIIPLRPGMQKDRDDVIRALIDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RGTFRV GD IEI P++ + A RV FG++I+ I+ LTG+ +++ + I Sbjct: 183 EIDFHRGTFRVHGDVIEIVPANESETAIRVEFFGDEIDRITCVDILTGEVKQDLNFVSIA 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ T++ A + I+ EL++R+ E + EG+LLEAQR+E+R +D+EML TG C Sbjct: 243 PASHYVVPQETIDRATRDIEAELELRVGEFKGEGKLLEAQRIEERTNFDIEMLRETGVCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++G PGEPP TL ++ P+D L+ VDESH TIPQI MY GD RK+TL +Y Sbjct: 303 GIENYSRHMSGLKPGEPPYTLMDFFPDDFLIIVDESHRTIPQIGAMYAGDRSRKSTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +E E + + EQIIRPTGL+DP V+ Sbjct: 363 GFRLPSALDNRPLSFDEFEERIDQILFVSATPGEYEAEH-ELLRAEQIIRPTGLLDPKVD 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++L+T LTKRMAEDLT+Y+ E IRV Y+HS++ LE Sbjct: 422 VRPVEGQIDDLIGEIKKEVAAHHKVLVTTLTKRMAEDLTDYMKEAGIRVNYLHSDIDALE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAKIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q +N++H+I PQ++++++ E+I + D Sbjct: 542 NSEGHVIMYADNMTDSMRNAISETERRRAVQELYNEEHHITPQTIQKRVGELIS--ISRD 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A ++ S++KK+ + + KQM AA LNFE AA++RD +K LK + Sbjct: 600 VAARERKLEKDPESMTKKELTKLIADVEKQMKAAAAELNFEMAAQLRDRMKELKQT 655 >gi|313888540|ref|ZP_07822206.1| excinuclease ABC, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845426|gb|EFR32821.1| excinuclease ABC, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 653 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/651 (54%), Positives = 467/651 (71%), Gaps = 1/651 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L +GI K Q LLGVTGSGKTFTMA VIE +Q+P +V+A Sbjct: 3 FKIHSEYKPTGDQPQAIDKLTEGIKKGYKHQNLLGVTGSGKTFTMANVIERVQKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SE K FFP NAVE+FVSYYDYYQPEAYVP TDT+IEK+SSIN++ID++RH Sbjct: 63 HNKTLAYQLCSELKEFFPENAVEFFVSYYDYYQPEAYVPGTDTFIEKDSSINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y ++ + L+ G ++ E++S LV QY R Sbjct: 123 SATMALFERKDVIIVASVSCIYGLGDPIDYEKLAISLRPGMIRDRNEVMSKLVDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EIFP+ + + RV FG++I+ I+E LTGQ + + I Sbjct: 183 DYEFKRGTFRVRGDILEIFPASSSENSIRVEFFGDEIDRITEVNALTGQVLHYLNHAYIT 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + A+ I+EEL+ RL L+ + +LLEAQRLEQR YDLEML G C Sbjct: 243 PASHFATSEEKVKRAIVTIEEELEERLKVLKDQEKLLEAQRLEQRTRYDLEMLSEMGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG P TL +Y P+D L +DESH TIPQI GMY GD RK TL EY Sbjct: 303 GIENYSRHLSGRAPGSRPYTLIDYFPKDFLTIIDESHQTIPQIRGMYNGDRARKETLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF E+ + + VSATPG +ELE + VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLRFNEFEEMMNQCVYVSATPGPYELEHTEQ-EVEQIIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ +E+N A ++ R+L+T LTKRM+EDL+ +L E ++ YMHS+V TLE Sbjct: 422 VRPIKNQIDDIINEVNGAIEREERVLITTLTKRMSEDLSRHLKEIGYKITYMHSDVDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGK DVLVGINLLREGLD+PE V ILDADKEGFLRS TSLIQT GRAAR Sbjct: 482 RMKIIRDLRLGKVDVLVGINLLREGLDLPEVSRVCILDADKEGFLRSVTSLIQTAGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YADTIT S+Q+ IDET+RRR+ Q E+N++H I P+++ + + EVI+ + + Sbjct: 542 NAGGKVIMYADTITPSMQVTIDETSRRRKIQEEYNEEHGITPKTIVKSVREVINTAIAAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + I ++ +K + + +L+ +M+ AA+ L+FE+AA IRD+IK Sbjct: 602 ESIDFKDIKDEENEFTKDEINEMIDALKPEMYRAAEELDFEKAAEIRDKIK 652 >gi|196033206|ref|ZP_03100619.1| excinuclease ABC, B subunit [Bacillus cereus W] gi|206976848|ref|ZP_03237751.1| excinuclease ABC, B subunit [Bacillus cereus H3081.97] gi|217962646|ref|YP_002341220.1| excinuclease ABC subunit B [Bacillus cereus AH187] gi|222098620|ref|YP_002532678.1| excinuclease abc subunit b [Bacillus cereus Q1] gi|229141893|ref|ZP_04270419.1| UvrABC system protein B [Bacillus cereus BDRD-ST26] gi|195994635|gb|EDX58590.1| excinuclease ABC, B subunit [Bacillus cereus W] gi|206744983|gb|EDZ56387.1| excinuclease ABC, B subunit [Bacillus cereus H3081.97] gi|217065785|gb|ACJ80035.1| excinuclease ABC, B subunit [Bacillus cereus AH187] gi|221242679|gb|ACM15389.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus cereus Q1] gi|228641508|gb|EEK97813.1| UvrABC system protein B [Bacillus cereus BDRD-ST26] Length = 658 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|94985990|ref|YP_605354.1| excinuclease ABC subunit B [Deinococcus geothermalis DSM 11300] gi|94556271|gb|ABF46185.1| excinuclease ABC, B subunit [Deinococcus geothermalis DSM 11300] Length = 676 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 468/656 (71%), Gaps = 8/656 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 ++++D+ PSGDQP AI L+ G+ S + Q LLG TG+GKT++MAKVIE RPA++M Sbjct: 1 MLKVKSDFKPSGDQPTAIRSLVDGLASGLRFQTLLGATGTGKTYSMAKVIEETGRPALIM 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNKIL AQL SEF+ FFP AVE+F+SYYDYYQPEAYVP D +IEK++SIN++I+R+R Sbjct: 61 APNKILTAQLASEFREFFPGAAVEFFISYYDYYQPEAYVPGKDLFIEKDASINQEIERLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HS TRSLL R D IVV+SVSCIYG+G E Y + + LK+G+ V + E+L LV QY+R Sbjct: 121 HSTTRSLLTRRDTIVVASVSCIYGLGDPEEYRALNLILKVGEQVGRDEILGRLVTMQYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + G FR GD +E++PS+ E R+ ++G D++ I +P+TG K+ +++ + Sbjct: 181 NDLELAPGRFRAKGDIVEVWPSYDEQ-PLRIELWGEDVDRIQIVHPVTGDKLGDLDATVV 239 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y HYV+ + A+ I+EEL+ RL + G+LLEAQRL++R YDLEML+ G C Sbjct: 240 YPAKHYVSSAGNIERAIVTIQEELEERLEYFKSVGKLLEAQRLKERTLYDLEMLKVLGYC 299 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PGE P T+ +Y P+D + F+DESHVT+PQI GM GD RK TL + Sbjct: 300 SGIENYSRHIDGRKPGETPYTMLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQTLVD 359 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ + VSATPG +E Q + +QIIRPTGLVDP V Sbjct: 360 YGFRLPSALDNRPLNFDEFLHKTGQIVFVSATPGPFE-RQVSDNVADQIIRPTGLVDPSV 418 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + QV+D+ I A +G R L+T LTKRMAEDLTEYL E+ +R RYMHS++ ++ Sbjct: 419 TVRPIQGQVDDLLGRIRERAARGERTLVTTLTKRMAEDLTEYLLEKGVRARYMHSDIDSV 478 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER IIRDLRLG +DVL+GINLLREGLD+PE LVAILDADK GFLRS+ +LIQTIGRAA Sbjct: 479 ERQVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAILDADKPGFLRSERALIQTIGRAA 538 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN +V+LYADT+T ++Q A+DET RRREKQL +N +H I PQ+V++ + +VI E Sbjct: 539 RNVNGEVVLYADTVTPAMQAALDETQRRREKQLAYNAEHGITPQTVRKGVRDVIRG---E 595 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A ++S D L + A L L +M A+++L+FE AA +RD+I+ +++ Sbjct: 596 EVAEVDVSTD---LGDDRDALTAQLTELELEMWQASEDLDFERAAALRDQIRAIEA 648 >gi|126642540|ref|YP_001085524.1| excinuclease ABC subunit B [Acinetobacter baumannii ATCC 17978] Length = 623 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/622 (56%), Positives = 453/622 (72%), Gaps = 14/622 (2%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 MA VI QRP IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+ Sbjct: 1 MANVIAQTQRPTIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTF 60 Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304 IEK+++IN+ ID+MR SATR+LLER D I+V+SVS IYG+G +Y QM++ + GD V Sbjct: 61 IEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVS 120 Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + E++ LV+ QY R ++ +RGT+R+ G+ I+IFP+ + A R+ +F ++++ I F Sbjct: 121 RDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFD 180 Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424 PLTG+ +R V + IY SHYVTP+ L A+ IK+EL+ +L + +LLEAQR+EQ Sbjct: 181 PLTGKMVRKVPRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQ 240 Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484 R YDLEM++ G IENYSR+L+GR GE PPTLF+Y+PED+LL +DESHVT+PQI Sbjct: 241 RTRYDLEMMQQLGYTNGIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIG 300 Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544 MY+GD RK L YGFRLPS +DNRP++FEEW + PTTI VSATP +ELE+ + + Sbjct: 301 AMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-V 359 Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 VEQ++RPTGL+DP +E+R TQV+DV EIN+ R+L+T LTKRMAEDLT YL E Sbjct: 360 VEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKE 419 Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 ++V Y+HS++ T+ER++II +LR G FDVLVGINLLREGLD+PE LVAILDADKEGF Sbjct: 420 YGVKVAYLHSDIDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGF 479 Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724 LRS+ SLIQTIGRAARNV K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S Sbjct: 480 LRSERSLIQTIGRAARNVKGKAILYADTITDSMRKAIDETERRRAKQIEFNEQHGITPRS 539 Query: 725 -VKEKIMEV----------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773 V++ + E+ ID +LE A +S D + + K H+ L K+M Sbjct: 540 AVRQAVKEIDTGEVLSDDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLK 597 Query: 774 AADNLNFEEAARIRDEIKRLKS 795 A+ +L FE+AARIRDEI RLK+ Sbjct: 598 ASKDLQFEQAARIRDEIVRLKA 619 >gi|290889850|ref|ZP_06552937.1| hypothetical protein AWRIB429_0327 [Oenococcus oeni AWRIB429] gi|290480460|gb|EFD89097.1| hypothetical protein AWRIB429_0327 [Oenococcus oeni AWRIB429] Length = 673 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/665 (52%), Positives = 471/665 (70%), Gaps = 17/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL++G++ K Q+LLG TG+GKTFT++ VI ++ +P ++++ Sbjct: 11 FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+ Sbjct: 71 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL RND IVV+SVS I+G+G Y ++ L+ GD + L+ L+ QY R Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ + + I I+ Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T L +A I++E++ + + E++G+LLEAQRL+QR YD+EML G Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD RK TL +Y Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +EL + I EQIIRPTGL+DP + Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R R Q++D+ EIN A + R+ +T LTKRM+EDLT YL E ++V+Y+HS++KTL Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER E+IR+LRLGKFD LVGINLLREGLD+PE LVAILDADK+GFLR++ SLIQTIGRAA Sbjct: 491 ERTEVIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD +T+++Q AIDET RRR Q+++N++HNI P ++K++I I Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSI------ 604 Query: 740 DAATTNI-SIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A + + S D +L L+K K K + +L KQM AA ++FEEAA++RD I Sbjct: 605 -AISHEVQSADESKLDLTKVAFADMPIKDQKEMVGNLTKQMKSAAKRMDFEEAAQLRDSI 663 Query: 791 KRLKS 795 LK+ Sbjct: 664 LELKT 668 >gi|255282077|ref|ZP_05346632.1| excinuclease ABC subunit B [Bryantella formatexigens DSM 14469] gi|255267396|gb|EET60601.1| excinuclease ABC subunit B [Bryantella formatexigens DSM 14469] Length = 660 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/654 (52%), Positives = 466/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+KG + + LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FELVSEYKPTGDQPQAIEKLVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S++N++ID++R Sbjct: 64 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAVNDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D +++SSVSCIYG+G E++ +M+V L+ G ++ E++ L+ QY R Sbjct: 124 SATASLVERRDVVIISSVSCIYGLGEPENFEKMMVSLRPGMEKDRDEVIRQLIDIQYDRS 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EIFP+ D A+RV FG++I+ I++ LTG+ +E I ++ Sbjct: 184 EMDFHRGTFRVHGDVLEIFPASAGDYAFRVEFFGDEIDRITQIDVLTGEIKSRMEHIAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P + A I+EEL R+ + E +LLEAQR+ +R +D+EM++ TG C Sbjct: 244 PASHYVVPPDRIRQAAADIEEELAERVAYFKSEDKLLEAQRIAERTNFDIEMMKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG PP TL +Y P+D L+ +DESH TIPQI MY GD RK TL +Y Sbjct: 304 GIENYSRHLAGLKPGAPPHTLIDYFPDDFLMIIDESHKTIPQIRAMYSGDQSRKTTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E + + EQIIRPTGL+DP V+ Sbjct: 364 GFRLPSAKDNRPLNFEEFESKIDQIMFVSATPGEYE-EAHEQLRAEQIIRPTGLLDPKVD 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLTEY+ E IRVRY+HS++ TLE Sbjct: 423 VRPVEGQIDDLVGEVNKEVAKKNKVLITTLTKRMAEDLTEYMREIGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSATSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+++AI+ET RRR Q +N++H I PQ++++ + ++I + ++ Sbjct: 543 NAEGHVIMYADVMTDSMKIAIEETERRRRVQDAYNQEHGITPQTIQKSVRDLIS--ISKE 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + S+SKK+ + + ++K+M AA LNFE AA +RD++ LK Sbjct: 601 VAKEEKKLAVDPESMSKKELEKLIAEVQKKMKKAAAELNFEAAAELRDQMINLK 654 >gi|15841088|ref|NP_336125.1| excinuclease ABC subunit B [Mycobacterium tuberculosis CDC1551] gi|253799329|ref|YP_003032330.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN 1435] gi|13881302|gb|AAK45939.1| excinuclease ABC, subunit B [Mycobacterium tuberculosis CDC1551] gi|253320832|gb|ACT25435.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN 1435] Length = 739 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 48 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 107 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 108 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 167 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 168 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 227 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 228 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 286 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 287 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 346 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 347 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 406 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 407 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 466 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 467 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 526 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 527 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 586 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 587 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 646 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 647 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 706 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 707 AARDLQFELAARFRDEIADLKRE--LRGMD 734 >gi|160935824|ref|ZP_02083199.1| hypothetical protein CLOBOL_00715 [Clostridium bolteae ATCC BAA-613] gi|158441568|gb|EDP19278.1| hypothetical protein CLOBOL_00715 [Clostridium bolteae ATCC BAA-613] Length = 660 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/661 (53%), Positives = 473/661 (71%), Gaps = 16/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 4 FELVSEFQPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPKNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y +M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++I+P++ + VA+RV FG++++ ISE LT + + + I+ Sbjct: 184 DMDFKRGTFRVRGDVLDIYPAYSDGVAYRVEFFGDEVDRISEIDTLTDETKAQLGHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A + I EL+ R+ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVPKEKMMEATENILTELEERVTFFKSEDKLLEAQRISERTNFDVEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD RK TL ++ Sbjct: 304 GIENYSRHLTGGLPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKTTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP ++E E + + VEQIIRPTGL+DP + Sbjct: 364 GFRLPSALDNRPLAFPEFESKINQMMFVSATPSAYEAEH-ELMRVEQIIRPTGLLDPEIS 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVSEVNKEVAAHHKVLITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+R+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+ +AI+ET RRR+ Q ++N+ H I P ++K+ + ++I Sbjct: 543 NSEGHVIMYADKVTDSMAVAIEETNRRRQIQQKYNEDHGITPTTIKKAVRDLI------- 595 Query: 741 AATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKR 792 A + ++ D + S+ +K+ K K L K+MH AA LNFEEAAR+RD EIK+ Sbjct: 596 AISKAVNADDKHFKKDPESMDEKELKKLSKELEKKMHQAAAELNFEEAARLRDRMIEIKK 655 Query: 793 L 793 + Sbjct: 656 M 656 >gi|238853234|ref|ZP_04643619.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4] gi|238834118|gb|EEQ26370.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4] Length = 671 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V + G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I L+ Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663 >gi|121637540|ref|YP_977763.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990015|ref|YP_002644702.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|121493187|emb|CAL71658.1| Excinuclease ABC subunit B uvrB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773128|dbj|BAH25934.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Tokyo 172] Length = 698 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMD 693 >gi|42784318|ref|NP_981565.1| excinuclease ABC subunit B [Bacillus cereus ATCC 10987] gi|81830915|sp|Q72XV1|UVRB_BACC1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|42740249|gb|AAS44173.1| excinuclease ABC, B subunit [Bacillus cereus ATCC 10987] gi|324329109|gb|ADY24369.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 658 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+++AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMEIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|257469334|ref|ZP_05633428.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185] gi|317063581|ref|ZP_07928066.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185] gi|313689257|gb|EFS26092.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185] Length = 660 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/657 (52%), Positives = 479/657 (72%), Gaps = 5/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + Y P+GDQP AI ++ I++ K Q+LLGVTGSGKTFT+A +IE QRPA+++ Sbjct: 1 MFKIHSKYSPTGDQPEAIKKITDNINNGVKNQVLLGVTGSGKTFTVANIIEKTQRPALIL 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SSIN++I+++R Sbjct: 61 APNKTLAAQLYSEYKSFFPDNAVEYFVSYYDYYQPEAYIATTDTYIEKDSSINDEIEKLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT +L+ R D I+V+SVS IYG+GS E+Y +M + + +++KEL+ L+ +Y+R Sbjct: 121 HAATAALMNRRDVIIVASVSAIYGLGSAETYRKMTIPIDRQTGIDRKELIERLISIRYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378 DI RG FR+ GD I+I+PS++E +R+ +G+D+EEISE LTGQKIR N+E I Sbjct: 181 NDIAFERGKFRIKGDVIDIYPSYME-TGYRLEYWGDDLEEISEINTLTGQKIRKNLERIV 239 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y + Y+T + I+++LK+ + EK G+LLEAQRL+QR YD+EM+ G Sbjct: 240 LYPATQYLTADGDNERILAEIQKDLKIEVEAFEKRGKLLEAQRLKQRTEYDIEMIREIGY 299 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSRYL+G+ GE P TL EY P+D L+F+DESH++IPQI GMY GD RK L Sbjct: 300 CKGIENYSRYLSGKKEGETPDTLLEYFPKDFLIFIDESHISIPQIRGMYNGDRARKTALV 359 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRL + +DNRPL+FEE+ + ++ VSATPG +E+E G I EQ+IRPTG++DP Sbjct: 360 ENGFRLKAALDNRPLKFEEFRKISDQSVFVSATPGDFEVESSHGHIAEQLIRPTGILDPI 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R + QV+D+ +EI + A + R+L+T LTK+MAE+LTEY +RV+YMHS++ T Sbjct: 420 IEVRPTKNQVDDLLEEIRIRADKKERVLVTTLTKKMAEELTEYYLGFGVRVKYMHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LERI+II+ LR G+FD LVGINLLREGLDIPE LVAIL+ADKEGFLRS+ SL+QTIGRA Sbjct: 480 LERIDIIKGLRKGEFDALVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ +VILY D +T S++ AIDET RRR+ Q E+N +NI+P+++ ++I E D I L Sbjct: 540 ARNIEGRVILYGDVMTDSMKQAIDETNRRRKIQNEYNVFNNIDPKTIVKEISE--DLINL 597 Query: 739 EDAATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N + + + + +K + + L+KQ+ + L+FE A RDE+ +LK Sbjct: 598 DYGLDINETEGKDKKTFTSRKDIEKEIIKLQKQIAKLSKELDFENAIIKRDEMTKLK 654 >gi|312142862|ref|YP_003994308.1| excinuclease ABC, B subunit [Halanaerobium sp. 'sapolanicus'] gi|311903513|gb|ADQ13954.1| excinuclease ABC, B subunit [Halanaerobium sp. 'sapolanicus'] Length = 673 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/667 (53%), Positives = 477/667 (71%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + GDQP AI L +GI+ K Q LLG TG+GKTFTMA+++E + +P +V+A Sbjct: 6 FKLKAPFEAKGDQPEAIKNLARGINKGYKHQTLLGATGTGKTFTMARLVEEVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++S+NE+I+++R Sbjct: 66 HNKTLAAQLTSEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASVNEEIEKLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D ++V+SVSCIYG+GS + Y + + +K+G +E+KE+ SL QY R Sbjct: 126 SATTSLFERRDVLIVASVSCIYGLGSPDDYLDLSLHIKVGKIMERKEITRSLTFMQYSRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD I+IFP++ DVA RV +FG++IE I+ +TG+ ++ + IY Sbjct: 186 DMDTSRGHFRVKGDVIDIFPAY-RDVAIRVELFGDEIERITRINTVTGEVQAEIDEMTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VTP + A+K I EL+ RL EL E RL+EAQRLEQR YDLEMLE G C Sbjct: 245 PASHFVTPEDKVKRAIKTISAELEERLEELRSENRLVEAQRLEQRTRYDLEMLEQMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L GR G P L +Y P+D ++ +DESH+T+PQI GM+ GD RK L EY Sbjct: 305 GIENYARHLAGREKGSRPMALLDYFPDDFMVIIDESHMTVPQIGGMFAGDRSRKEKLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + P + VSATPG +E + Q I VEQIIRPTGLVDP V+ Sbjct: 365 GFRLPSALDNRPLNFEEFQEVVPQAVYVSATPGPYEKKHSQQI-VEQIIRPTGLVDPEVD 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++++ +EI + R+L+T LTK+M+EDLTEYL E IRVRY+HS++ T+E Sbjct: 424 VRPTKGQIDNLLEEIRQVVKDEERVLVTTLTKKMSEDLTEYLAEAGIRVRYLHSDIDTIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE VAILDADKEGFLRS+ +L+QTIGRAAR Sbjct: 484 RSEIIRDLRLGEFDVLVGINLLREGLDLPEVSRVAILDADKEGFLRSERALVQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 NV KVI+YAD IT S++ AIDET RRRE Q+E+N++H+I P+++ + + +V+ P+ + Sbjct: 544 NVGGKVIMYADKITDSMRKAIDETRRRREIQIEYNQEHDITPETIIKPVRDVLRPVEMVV 603 Query: 739 -EDAATTNISIDAQQLSLSKKKGKAHLK---------SLRKQMHLAADNLNFEEAARIRD 788 ED + A + +K+ A + L ++M AA NL FE AA+IRD Sbjct: 604 SEDKSRYYDKSKAGESEEERKENYAQMSRKEIHQLILDLEEEMEEAAGNLEFEIAAQIRD 663 Query: 789 EIKRLKS 795 EI+ L++ Sbjct: 664 EIEELEA 670 >gi|15608771|ref|NP_216149.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Rv] gi|31792819|ref|NP_855312.1| excinuclease ABC subunit B [Mycobacterium bovis AF2122/97] gi|148661428|ref|YP_001282951.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra] gi|289443086|ref|ZP_06432830.1| excinuclease ABC, B subunit [Mycobacterium tuberculosis T46] gi|54039842|sp|P67423|UVRB_MYCBO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|54042750|sp|P67422|UVRB_MYCTU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|2113917|emb|CAB08886.1| PROBABLE EXCINUCLEASE ABC (SUBUNIT B-HELICASE) UVRB [Mycobacterium tuberculosis H37Rv] gi|31618409|emb|CAD96327.1| Excinuclease ABC subunit B uvrB [Mycobacterium bovis AF2122/97] gi|148505580|gb|ABQ73389.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra] gi|289416005|gb|EFD13245.1| excinuclease ABC, B subunit [Mycobacterium tuberculosis T46] gi|328459079|gb|AEB04502.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN 4207] Length = 698 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMD 693 >gi|329667663|gb|AEB93611.1| excinuclease ABC subunit B [Lactobacillus johnsonii DPC 6026] Length = 671 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V L G + + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+N ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRCLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I LK Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663 >gi|300741423|ref|ZP_07071444.1| excinuclease ABC subunit B [Rothia dentocariosa M567] gi|300380608|gb|EFJ77170.1| excinuclease ABC subunit B [Rothia dentocariosa M567] Length = 722 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/703 (51%), Positives = 481/703 (68%), Gaps = 55/703 (7%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L + + + EK +L+G TG+GK+ T A ++E++QRP +VM Sbjct: 14 FEVVSPYQPAGDQPKAIAELTERVENGEKDIVLMGATGTGKSATAAWLVESVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVS+VSCIYG+G+ E Y + +V LK GD +++ +LL V QY R Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLKRGDEIDRDDLLRQFVNMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A R+ FG++IE I +PLTG+ IR + + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EEHAIRIEFFGDEIEAIYTLHPLTGEVIREEDEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL LE +G+LLEAQRL R TYDLEM+E G Sbjct: 253 PASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFTS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR+ G P L +Y P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ TI +SATPG +EL Q G VEQIIRPTGLVDP + Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLVDPEII 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ ++I ++ R+L+T LTKRMAEDLTEYL + +RV+Y+HS+V TL+ Sbjct: 432 VKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRVQYLHSDVDTLK 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADT+T S++ AIDET RRRE Q +N++H I+PQ +++KI ++ D + E+ Sbjct: 552 NVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKIADITDVLAREE 611 Query: 741 AATTNISIDAQQLSLSKKKG------------------------------KAH------- 763 T + QL S KKG KA Sbjct: 612 EDTHEL----LQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQDRVRADG 667 Query: 764 ------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +QM LAA+NL FE AAR+RDE+ LK Sbjct: 668 LAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLK 710 >gi|289423233|ref|ZP_06425044.1| excinuclease ABC, B subunit [Peptostreptococcus anaerobius 653-L] gi|289156333|gb|EFD04987.1| excinuclease ABC, B subunit [Peptostreptococcus anaerobius 653-L] Length = 659 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/661 (52%), Positives = 469/661 (70%), Gaps = 16/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+D+ P GDQP AI + K I ++ K Q L+GVTGSGKTF MA +IE +++P +++A Sbjct: 4 FKIQSDFKPMGDQPKAIDTICKSIENKNKFQTLVGVTGSGKTFAMANIIERVKKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++LER D I++SSVSCIYG+G + Y ++++ L+ G ++ +++ LV+ QY+R Sbjct: 124 SATAAILERQDTIIISSVSCIYGLGDPKDYKELMLSLRPGMMRDRDDVIRRLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD +EIFP+ +D A RV FG++I+ I+E +TG+ + I I+ Sbjct: 184 DVNFIRGTFRVRGDILEIFPASTDDKAIRVEFFGDEIDRITEIDYITGKVVAERGHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + +A+ I+EEL+ + + + +LLEAQR+EQR YD+EML G CQ Sbjct: 244 PASHYVTTPERIESAIISIEEELEKAIADFKANDKLLEAQRIEQRTKYDIEMLREIGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR GE P TL ++ P+D LL VDESHVT+PQ+ GMY GD RK +L E Sbjct: 304 GIENYSRHITGRKKGEKPYTLMDFFPDDFLLIVDESHVTLPQVRGMYGGDRSRKKSLIEN 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRL S DNRPL FEE+ + +ATPG +E+E + EQIIRPTGL+DP ++ Sbjct: 364 GFRLESAYDNRPLNFEEFESNLNQVLFTTATPGPYEMEHTD-VFAEQIIRPTGLLDPLID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + G R+L+T LTK+M+EDLT YL I+V+Y+HS++ TLE Sbjct: 423 VRPVNNQIDDLLVEINKTIESGERVLITTLTKKMSEDLTNYLKGVGIKVKYLHSDIVTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLDIPE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S++ AIDET RRR Q+ +N++H I P+++ + I + I Sbjct: 543 NSNGRVIMYADKITDSMKRAIDETERRRSIQMAYNEEHGIVPKTISKNIRDNI------- 595 Query: 741 AATTNISIDAQQLSLSKKKG-------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A T ++ +A+ LS KG + L+ +M A+ LNFE AA +RD++ L Sbjct: 596 -AITRVAEEAESYDLSGIKGLKDQDEIATTIIILKSKMMEEAEKLNFELAAELRDKVTEL 654 Query: 794 K 794 + Sbjct: 655 E 655 >gi|172036961|ref|YP_001803462.1| excinuclease ABC subunit B [Cyanothece sp. ATCC 51142] gi|171698415|gb|ACB51396.1| excinuclease ABC subunit B [Cyanothece sp. ATCC 51142] Length = 670 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/666 (52%), Positives = 472/666 (70%), Gaps = 20/666 (3%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++Q + P+GDQP+AI QL + + + Q LLG TG+GKTF++A VIE + +P +V+ Sbjct: 6 IFELQAPFKPTGDQPSAIKQLTQSLQENNRFQTLLGATGTGKTFSIAAVIENIGKPTLVL 65 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +R Sbjct: 66 AHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSASINDEIDMLR 125 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSATRSL ER D IVV+S+SCIYG+G Y + V L++G V+Q++LL LV QY R Sbjct: 126 HSATRSLFERKDVIVVASISCIYGLGMPAEYLKASVPLEVGKEVDQRQLLRDLVTVQYSR 185 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ + +++ I I Sbjct: 186 NDLDLQRGRFRVKGDVLEIVPAY-EDRVVRVEFFGDEIDAIRYLDPVTGEILNSLKNINI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y H+VTP L A + I+ ELK +++ LEK G+LLEAQR++QR YDLE+L G C Sbjct: 245 YPARHFVTPEEQLEAACEAIEIELKEQVLNLEKAGKLLEAQRIDQRTRYDLELLREVGYC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSR+L GR PG PP L +Y P+D LL VDESHVT+PQI GMY GD RK L + Sbjct: 305 NGVENYSRHLAGRKPGSPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQARKKVLID 364 Query: 500 YGFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPS DNRPL+ EE W+ + I VSATPG+WE+EQ + ++EQIIRPTG++DP Sbjct: 365 HGFRLPSAADNRPLKSEEFWDKVN-QCIFVSATPGNWEIEQSEDRVIEQIIRPTGVLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + +R QV+D+ EI ++ R+L+T LTKRMAEDL+EY ER+++V+Y+HSE+K+ Sbjct: 424 IFVRPTEGQVDDLLGEIKQRVKRKERVLITTLTKRMAEDLSEYFQERDVKVQYLHSEIKS 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ERIEI++ LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRA Sbjct: 484 IERIEILQALRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 AR+VN + ILY D +T S+ AI+ET RRR Q+ +NK+HNI PQ + ++ I L Sbjct: 544 ARHVNGQAILYGDNLTDSMIKAIEETDRRRNIQMAYNKRHNITPQPIIKRSSNAILSFL- 602 Query: 739 EDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 +IS ++AQQL L K ++ L +QM +A NL FEEAA+ RD Sbjct: 603 ------DISRRLNAQQLEEVYTQADDLPLDKVPELIQQLEQQMQESAKNLEFEEAAKYRD 656 Query: 789 EIKRLK 794 +IK L+ Sbjct: 657 KIKHLR 662 >gi|78780126|ref|YP_398238.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9312] gi|78713625|gb|ABB50802.1| Excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9312] Length = 679 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/670 (52%), Positives = 469/670 (70%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI +L++G++S ++ Q LLG TG+GKTFT+A VI+ RPA+V+A Sbjct: 4 YKLQAPYEPNGDQPEAIKKLVRGVNSGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G S+ + L SLV+ QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FR+ GD +EI P++ ED R+ +FG+++E I P TG+ + ++E I +Y Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQISVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ IK ELK +L + EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKERLESAISAIKSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR G PP L +Y P+D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC G VEQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCNGEFVEQVIRPTGVLDPVID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ EI + A++ R+L+T LTKRMAEDLT++L E +RVRY+HSE+ ++E Sbjct: 423 VRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V +LYAD T S++ AI ET RRR Q +HN+ + I P+ +KI I L Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKHNQDNGITPKPAGKKIENSILSFLELS 602 Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKA------HL-KSLRKQMHLAADNLNFEEAA 784 L+ + NI + + L+ + HL L +M AA LNFEEAA Sbjct: 603 RKLDAGGLSKDLINIVNNKTDVILNASDNQCLIEELPHLIDKLEMKMKDAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKKLR 672 >gi|228942302|ref|ZP_04104841.1| UvrABC system protein B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975231|ref|ZP_04135789.1| UvrABC system protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981869|ref|ZP_04142164.1| UvrABC system protein B [Bacillus thuringiensis Bt407] gi|228777981|gb|EEM26253.1| UvrABC system protein B [Bacillus thuringiensis Bt407] gi|228784510|gb|EEM32531.1| UvrABC system protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817346|gb|EEM63432.1| UvrABC system protein B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942958|gb|AEA18854.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 658 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +NK+H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTTAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|260890126|ref|ZP_05901389.1| hypothetical protein GCWU000323_01288 [Leptotrichia hofstadii F0254] gi|260860149|gb|EEX74649.1| excinuclease ABC subunit B [Leptotrichia hofstadii F0254] Length = 635 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/624 (55%), Positives = 461/624 (73%), Gaps = 5/624 (0%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 Q+LLGVTGSGKTFT+A VIE + RPA++MAPNK LAAQLY+E+K FFP NAVEYFVSYYD Sbjct: 11 QILLGVTGSGKTFTVANVIEKINRPALIMAPNKTLAAQLYNEYKQFFPENAVEYFVSYYD 70 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 YYQPEAY+ +TDTYIEK+SSIN++ID++RH+AT +LL R D I+V+SVS IYG+GS E+Y Sbjct: 71 YYQPEAYIMQTDTYIEKDSSINDEIDKLRHAATAALLNRRDVIIVASVSAIYGLGSPEAY 130 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + + + + E+ EL+ L+ +Y+R DI RG FRV GD +++ PS+ +D +R Sbjct: 131 KKRSIPIDVETGFERNELIKRLISLRYERNDIAFERGKFRVKGDILDLHPSY-QDTGYRF 189 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG+D+E ISE LTGQKIRN++ I I +HY+T T + IK+E++ R+ Sbjct: 190 EFFGDDLESISEINTLTGQKIRNIKRITIMPATHYLTNEDT-KVMFEAIKKEMEERVHFF 248 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +KEG+LLEAQR+EQR YDLEM+E G C+ +ENYSRYLTG++ GE P TL +Y PED + Sbjct: 249 QKEGKLLEAQRIEQRTKYDLEMIEEIGYCKGVENYSRYLTGKSEGEAPDTLIDYFPEDLV 308 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530 +F+DESH+++PQI+GMY+GD RK +L + GFRLPS DNRPL+FEE+ P + +SA Sbjct: 309 VFLDESHISVPQINGMYKGDRARKQSLIDNGFRLPSAYDNRPLKFEEFFEKVPQVVYISA 368 Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590 TP +ELE G +VEQ++RPTG+++P ++IR + Q++D+ DEI + RIL+T L Sbjct: 369 TPSDYELEHSNGEVVEQLVRPTGIIEPSIDIRETKNQIDDLMDEIKTRTARKERILVTTL 428 Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+MAE+LT+Y E I+V+YMHS++ TLER EIIR LR G+FDVLVGINLLREGLDIPE Sbjct: 429 TKKMAEELTDYYLEYGIKVKYMHSDIDTLERTEIIRGLRKGEFDVLVGINLLREGLDIPE 488 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LVAIL+ADKEG+LRS+ SLIQT+GRAARNV VILYAD IT S+Q AIDE RRRE Sbjct: 489 VSLVAILEADKEGYLRSRRSLIQTMGRAARNVEGHVILYADRITGSMQEAIDEVNRRREV 548 Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770 Q ++N ++NINP+S+ +I E I +E N +I + S+K + +K L KQ Sbjct: 549 QEKYNLENNINPKSIVREIAESIVDYEIEKENEANKAIKQYK---SEKDVEKEIKKLDKQ 605 Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794 + A+ LNFEEA ++RD++ LK Sbjct: 606 IKKLAEELNFEEAIKLRDKMNELK 629 >gi|313113936|ref|ZP_07799493.1| excinuclease ABC subunit B [Faecalibacterium cf. prausnitzii KLE1255] gi|310623731|gb|EFQ07129.1| excinuclease ABC subunit B [Faecalibacterium cf. prausnitzii KLE1255] Length = 685 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/654 (53%), Positives = 461/654 (70%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L+KG+ ++ Q LLGVTGSGKTFTMA VI RP +V+A Sbjct: 6 FELVSSYQPTGDQPQAIETLVKGVERGDRCQTLLGVTGSGKTFTMANVIAKCNRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH Sbjct: 66 HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +G Y M++ L+ G +E+ EL LV QY+R Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCQKLVTLQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +R FRV GD ++I+ +++ ++A RV FG++I+ I+EF PLTG K V+ + I+ Sbjct: 186 DVNFVRNKFRVHGDIVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGAKQNVVKHVAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ A++ I+ E ++ + EG+L+EAQR+ QR YD+EML G C+ Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDMEMLNEVGMCK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR PG P TL +Y P+D LLFVDESHVT+PQ+ MY GD+ RK TL EY Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPDDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE I VSATPG +E Q + +Q+IRPTGL+DP + Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGDYE-RQNSTQVAQQVIRPTGLLDPLIS 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV D+ EIN Q+ R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E Sbjct: 425 VRPVEGQVVDLLGEINTRIQRHERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLRLG DV+VGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+ AI ET RRR Q+ +NK+H I P+++ + + D I + D Sbjct: 545 NAEGLVIMYADIVTDSMDRAITETERRRAIQMAYNKEHGIVPKTI---VKAIADSIEISD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A N ++ ++ + + + +A ++ L ++M AA L FE AA +RD+I RL+ Sbjct: 602 KA-ENAKLNTRR--MGRMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652 >gi|227889627|ref|ZP_04007432.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC 33200] gi|227849770|gb|EEJ59856.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC 33200] Length = 671 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G EK Q+L G TG+GKTFTMA VI + +P +V++ Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T L+ RND IVV+SVSCIYG+G Y+ +V L G + LL LV QY R Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEFSRDVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+PP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+N ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAAR Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT S++ AID T RRR Q++ NK+H I P+++ + I +VI D Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S D L+KK+ + +K+L QM AA L+FEEAA +RD I LK Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663 >gi|148822840|ref|YP_001287594.1| excinuclease ABC subunit B [Mycobacterium tuberculosis F11] gi|148721367|gb|ABR05992.1| excinuclease ABC subunit B (helicase) uvrB [Mycobacterium tuberculosis F11] Length = 698 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKHNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMD 693 >gi|326201746|ref|ZP_08191617.1| excinuclease ABC, B subunit [Clostridium papyrosolvens DSM 2782] gi|325988346|gb|EGD49171.1| excinuclease ABC, B subunit [Clostridium papyrosolvens DSM 2782] Length = 657 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AIA++ K I +K Q LLGVTGSGKT+T+AKVIE +Q+P +V+A Sbjct: 4 FEVISPYKPMGDQPEAIAKISKAIQEGQKHQTLLGVTGSGKTYTVAKVIEQVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SS+NE+ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSVNEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y+ +++ L++G ++ E++ LV QY+R Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDEVIRKLVDIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RG FR GD +EIFP++ + RV FG++IE I+E LTG+ I E I ++ Sbjct: 184 EIDFRRGRFRARGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIIGTREHIAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T RP ++ AM I++EL+ RL + + EG+LLEAQRLEQR YDLEM+ G CQ Sbjct: 244 PASHYATTRPKMDRAMVTIEKELEERLEQFKMEGKLLEAQRLEQRTRYDLEMMSEIGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR PG P TL +Y P+D LL +DESHVT+ Q+ MY GD RK +L EY Sbjct: 304 GIENYSRHISGREPGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + VSATP +E E IVEQI+RPTGL+DP + Sbjct: 364 GFRLPSAFDNRPLKFHEFEERVNQVVYVSATPAVYEREHSTQ-IVEQILRPTGLIDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EIN A++ R+L+T LTK+MAEDLT+Y+ E +I+V+Y+HS+V T E Sbjct: 423 IRPVKGQIDDLIGEINTRAEKKQRVLVTTLTKKMAEDLTDYMKELDIKVKYLHSDVVTFE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT S+ AI ET RRR+ Q+++NKKH I P ++++ + V++ + + Sbjct: 543 NSEGKVIMYADNITGSMHRAISETNRRRQIQMDYNKKHGIVPTTIQKSVRNVLEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + +S+++ + + L+ +M AA +L FE AA +RD+I+ L+ Sbjct: 603 EEDKYYA-GKKATHMSEQELEKLIAKLQSEMKQAAADLQFERAAELRDKIESLRG 656 >gi|229050827|ref|ZP_04194379.1| UvrABC system protein B [Bacillus cereus AH676] gi|228722483|gb|EEL73876.1| UvrABC system protein B [Bacillus cereus AH676] Length = 658 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL + G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNENGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|307326043|ref|ZP_07605241.1| excinuclease ABC, B subunit [Streptomyces violaceusniger Tu 4113] gi|306888265|gb|EFN19253.1| excinuclease ABC, B subunit [Streptomyces violaceusniger Tu 4113] Length = 712 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/699 (50%), Positives = 473/699 (67%), Gaps = 37/699 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + F++ + Y PSGDQP AIA L + + EK +LLG TG+GK+ T A +IE Sbjct: 4 VTQLERKVAPFEVVSSYQPSGDQPTAIADLERRVRGGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V+LK+G+ +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLKVGEEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYARNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + ++ SHYV + A+ I+ EL L LEK+G+LLEAQRL R TYD+ Sbjct: 243 ISEDRELYVFPASHYVAGPERMEKAIAGIEAELTETLARLEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G+C IENYS ++ GR G PP TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMMRQIGTCSGIENYSLHIDGRETGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLIEHGFRLPSALDNRPLKWEEFLKRVGQTVYLSATPGPFELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y+ E I+VR Sbjct: 422 PTGLIDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T ++ AIDET RRR+KQ+ +NK + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTAAMAKAIDETNRRRDKQIAYNKANKIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKA---------------------------- 762 +++ I ED T + + K K Sbjct: 602 DIVAQIAREDVDTEQLLGTGYRKVKDGKDAKTPVPAAGGKAAKGGKAAKGKAKEEVLTDR 661 Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +M AA L FE AAR+RDE+ LK Sbjct: 662 PAAELAEQIEEMTDRMRAAAAELQFEVAARLRDEVSELK 700 >gi|297624758|ref|YP_003706192.1| excinuclease ABC subunit B [Truepera radiovictrix DSM 17093] gi|297165938|gb|ADI15649.1| excinuclease ABC, B subunit [Truepera radiovictrix DSM 17093] Length = 682 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/655 (52%), Positives = 470/655 (71%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++++ + P GDQP AIA+L++G+ + Q LLG TG+GKTFTMAK+IEA QRPA+++A Sbjct: 3 LRVESPFSPRGDQPQAIAELVEGLGDGLRFQTLLGATGTGKTFTMAKIIEAAQRPALILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKIL AQL +EF++FFP AVE+F+SYYDYYQPEAYVP D +IEK+++IN +++R+RH Sbjct: 63 PNKILTAQLAAEFRDFFPGAAVEFFISYYDYYQPEAYVPARDLFIEKDANINAELERLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S TR+LL R D IVV+SVS IYG+GS ++Y Q+ + L++G + E+L LV QQY+R Sbjct: 123 STTRNLLTRRDTIVVASVSAIYGLGSPDTYQQLNLILRVGMRRNRDEILEQLVTQQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + G FRV GD +E++ ++ ++ R+ +FG++I+ ++ P+TG ++ +ET ++ Sbjct: 183 DVELAAGRFRVKGDVVEVWAAY-DEAPLRIELFGDEIDRLTMTDPVTGAELAELETTTVF 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVTP L A+ I+ +L+ RL E+ G+LLE QRL++R YDLEML+T G C Sbjct: 242 PAKHYVTPYEQLAPAIAQIERDLEARLEFFERAGKLLEKQRLKERTLYDLEMLKTLGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL GR PGEPP TL +Y P+D + F+DESHV +PQI GMY GD RK TL +Y Sbjct: 302 GIENYSRYLDGRQPGEPPHTLLDYFPDDFITFLDESHVMLPQIRGMYNGDRARKQTLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL+ +E+ I VSATP WE + EQIIRPTGLVDP + Sbjct: 362 GFRLPAALDNRPLKEDEFLARIGQAIFVSATPADWEYRHSDRV-AEQIIRPTGLVDPKIT 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +R Q++D+ I A +G R+L+T LTK+MAEDLTEY ++ +RVRYMHS++ +E Sbjct: 421 VKPSRGQIDDLVFAIRERAARGERVLVTTLTKKMAEDLTEYFAQQGLRVRYMHSDIDAVE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRDLRLG FDVL+GINLLREGLD+PE LVAILDADK GFLRS SLIQTIGRAAR Sbjct: 481 RQVIIRDLRLGHFDVLIGINLLREGLDLPEVSLVAILDADKTGFLRSGRSLIQTIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V LYAD +++++Q AI ET RRREKQL +N HNI P SV+++I +VI E+ Sbjct: 541 NVNGEVFLYADVVSEAMQDAISETERRREKQLAYNAAHNITPASVQKRIRDVIRGD--EE 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + + L++ K L +L +M A++ L+FE AA +RD I+ L++ Sbjct: 599 GAEADAQLSPWERELAQDDLKQELAALEVEMWRASEALDFERAAAVRDRIRELEA 653 >gi|238544545|dbj|BAH60897.1| putative excinuclease ABC subunit B [Desulfotignum balticum] Length = 665 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/661 (53%), Positives = 464/661 (70%), Gaps = 7/661 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ F +++ + P+GDQP AI L +G+ + E Q+LLGVTGSGKTFTMA +I +++P++ Sbjct: 1 MSLFHLKSSFSPTGDQPKAIEYLTQGVKANEPHQVLLGVTGSGKTFTMANIIAEVEKPSL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 ++APNK LAAQLY+EFK FP N VEYFVSYYDYYQPEAYVP +DTYI+K+SSIN+ ID+ Sbjct: 61 IIAPNKTLAAQLYNEFKLLFPDNCVEYFVSYYDYYQPEAYVPSSDTYIQKDSSINDIIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 MRHSATRS+L R D IVV+SVSCIYG+G+ E Y + + L + + L+ LV+ QY Sbjct: 121 MRHSATRSVLARRDVIVVASVSCIYGLGAPEDYLDLRITLARDMEISRDTLIRKLVEIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D RG FRV GD +E+FP++ ED A R+ FG+ IEEI E PL G+ + + Sbjct: 181 TRNDTDFHRGVFRVRGDRVEVFPAYEEDRAVRIDFFGDVIEEICEIDPLKGEILTTFDQT 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY SHYVT T A++ I EL+ RL +L + RL+EAQRLE+R YD+EML G Sbjct: 241 AIYPASHYVTKSQTRKRAVEAIFAELEERLAQLRADNRLVEAQRLEERTRYDMEMLNEIG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+LTGRNPGEPPPTL +Y+P D LLF DESH+++ Q++GMY+ D RK TL Sbjct: 301 YCTGIENYSRHLTGRNPGEPPPTLLDYMPNDFLLFFDESHISVSQLAGMYKADRSRKLTL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL F E++ I VSATP +ELE+ + EQI+RPTGL+DP Sbjct: 361 VEYGFRLPSAVDNRPLAFHEFSARTSRIIYVSATPADYELEKSGIRVAEQIVRPTGLLDP 420 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 V++R A TQV+D+Y EI + R+L+T LTKRMAEDLTEY + I+V+Y+HS++ Sbjct: 421 KVQVRDATTQVDDLYQEIIKRVEADERVLVTTLTKRMAEDLTEYYADLGIKVKYLHSDIV 480 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ERIEII+DLR G FDVL+GINLLREGLDIPE LVAILDADKEGFLRS S IQ GR Sbjct: 481 TMERIEIIQDLRRGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSFRSFIQIFGR 540 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VI+YA TKS++ A+ ET RRR+ Q +N+ H+I P ++++++ P Sbjct: 541 AARNVYGRVIMYAQKETKSMKKALAETRRRRKIQQAYNEAHHIVPATIQKQLNVFKYPA- 599 Query: 738 LEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D A T ++ D Q + ++ L +M AA+NL FE+AA RD+I++ Sbjct: 600 -SDTAGSGQETPSVHEDIQAYDGDDIDLEDLIRDLEYKMKKAAENLEFEQAAVFRDKIRQ 658 Query: 793 L 793 L Sbjct: 659 L 659 >gi|300813073|ref|ZP_07093451.1| excinuclease ABC, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495914|gb|EFK31058.1| excinuclease ABC, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 680 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI QL G + +K Q+L G TG+GKT+TMA VI M +P +V+ Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ RND IVV+SVSCIYG+G Y+ ++ + G E+ LL LV QY R Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A+R+ FG++I+ I E PLTG+ ++I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ IK E+ ++ + EKEG+LLEA+R++QR TYDLEML G Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R GEPP TL ++ P+DSL+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q IVEQ+IRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSR-IVEQVIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ LIQT+GRAAR Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S++LAIDET RRR Q+++N++H I P+++ + + ++I + + Sbjct: 549 NANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + S D L+ K+ K + +L++QM AA L+FE AA +RD I L+ S Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665 >gi|89098752|ref|ZP_01171633.1| excinuclease ABC subunit B [Bacillus sp. NRRL B-14911] gi|89086428|gb|EAR65548.1| excinuclease ABC subunit B [Bacillus sp. NRRL B-14911] Length = 659 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI+++++GI S ++ Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 5 FELVSKYSPQGDQPEAISRIVEGIRSGKRHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+ G +E+ +LL LV QY+R Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYKELVLSLRTGMEIERNQLLRRLVDIQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCMRVEFFGDEIDRIREVDALTGEIMGEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ RL E+ + G+LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKIAIGNIEKELEERLEEMRENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ VDESHVTIPQ+ GM+ GD RK+ L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVVDESHVTIPQVRGMFNGDQARKSVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F E+ + VSATPG +E+E +V+QIIRPTGL+DP +E Sbjct: 365 GFRLPSAMDNRPLTFPEFEKHINQIVYVSATPGPYEIEHTPE-MVQQIIRPTGLLDPTIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+L+T LTK+M+EDLT+YL E I+V+Y+HSEVKTLE Sbjct: 424 VRPIEGQIDDLIGEINDRVKKNERVLITTLTKKMSEDLTDYLKEIGIKVQYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LRLGK+DVL+GINLLREGLDIPE LV+ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRELRLGKYDVLIGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT S++LAI ET RRRE Q +N++H I PQ+++++I +VI + Sbjct: 544 NASGHVIMYADKITNSMELAISETKRRREIQEAYNEEHGITPQTIQKEIRDVIRATHAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + A+ ++KK+ + ++ K+M AA LNFE AA +RD + LK+ Sbjct: 604 -EQADYAAPAKPAKMTKKERDKLIANMEKEMKEAAKALNFERAAELRDLLLELKA 657 >gi|218234341|ref|YP_002369942.1| excinuclease ABC subunit B [Bacillus cereus B4264] gi|218162298|gb|ACK62290.1| excinuclease ABC, B subunit [Bacillus cereus B4264] Length = 658 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|227505038|ref|ZP_03935087.1| excision endonuclease subunit B [Corynebacterium striatum ATCC 6940] gi|227198402|gb|EEI78450.1| excision endonuclease subunit B [Corynebacterium striatum ATCC 6940] Length = 697 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/660 (52%), Positives = 472/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ PSGDQPAAIA+L + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FKVESEFQPSGDQPAAIAELDERLSRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V ++ G+ +++ L LV QY+R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIIEEGEEIDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFRV GD+++I P++ E+ A R+ FG+D++E+ +PLTG + V+ ++I+ Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDVDELYYIHPLTGDVLERVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ IK EL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMAKAVEDIKAELAERLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ T+ +SATPG++EL QG VEQ+IRPTGL+DP V Sbjct: 387 GFRLPSATDNRPLTFDEFEERVGQTVYMSATPGNFELTASQGEYVEQVIRPTGLIDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DEI + R+L+T LTKRMAEDLT+YL E ++VRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIDEIRQRTAKQERVLVTTLTKRMAEDLTDYLLEHGVKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD IT S+Q AI+ET RRR KQ+ +N++H I+PQ +++KI +++D + D Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVYESD 626 Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S A + +++ + + + L QM AA L FE A R+RDEI LK Sbjct: 627 GEEAAASDPAALMDKPDVSTMAVDEVQKLIDDLTAQMGAAARELKFELAGRLRDEIADLK 686 >gi|257066895|ref|YP_003153151.1| excinuclease ABC, B subunit [Anaerococcus prevotii DSM 20548] gi|256798775|gb|ACV29430.1| excinuclease ABC, B subunit [Anaerococcus prevotii DSM 20548] Length = 656 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/662 (54%), Positives = 468/662 (70%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P GDQP AI +L KGI + + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FNLKSDYKPRGDQPYAIDKLSKGIEAGDHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID+MRH Sbjct: 63 HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++V L+ G + ++++ L+ QY R Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPGQEISPEDVMRKLIDVQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR GD +++FP+ + A R FG++I+EISEF LTG+ + IY Sbjct: 183 DVEFSRGTFRRRGDILDVFPAGFDQKAIRFEFFGDEIDEISEFDSLTGKVTARISHAYIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ I+EEL+ RL EL E +LLEAQRLEQR YD+EML G C Sbjct: 243 PASHYATSSEKTEKAIITIEEELEERLAELNSENKLLEAQRLEQRTKYDIEMLREIGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y PED +L VDESHV+IPQ+ GMY GD RK L +Y Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ L + VSATPG +E E+ G +V+QIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLKFDEFEKLINQAVYVSATPGPYEKEKTHGKMVDQIIRPTGLLDPLIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +E++ + R+L+T LTK+MAEDLT +L E I+VRY+HS++KT+E Sbjct: 423 VRPTANQIDDLIEEVHATIAKKERVLVTTLTKKMAEDLTTFLTENGIKVRYLHSDIKTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVLVGINLLREGLDIPE L+ ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADTIT S++ AIDET RRR Q E N+KH I P ++K+ I E+I Sbjct: 543 NSEGRVIMYADTITGSMRRAIDETERRRTIQEEFNEKHGIVPTTIKKNIAEII------- 595 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T + + SK + L +L +M+ AA+ L+FE AA +RD+IK +K + F Sbjct: 596 -QITKKKEEEEIEEFSKDDIETILINLEAEMYKAAEELDFERAAALRDQIKSMKDN--FT 652 Query: 801 GL 802 G+ Sbjct: 653 GV 654 >gi|327398718|ref|YP_004339587.1| UvrABC system protein B [Hippea maritima DSM 10411] gi|327181347|gb|AEA33528.1| UvrABC system protein B [Hippea maritima DSM 10411] Length = 660 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/655 (51%), Positives = 466/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++DY P+GDQP I +L+ + S K Q+LLGVTGSGKTFT+A VI + +P +V++ Sbjct: 4 FKLKSDYEPAGDQPKVIKELVNNLKSGVKYQVLLGVTGSGKTFTIANVIAQIDKPVLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EF FFP NAVEYF+SYYDYYQPEAYVPRTDTYI K+SSIN++IDR++ Sbjct: 64 HNKTLAAQLYNEFSAFFPENAVEYFISYYDYYQPEAYVPRTDTYIAKDSSINDEIDRLKQ 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SLL R D IVV+SVSCIYG G E YS++ + +GD + +K++LS+ V+ Y R Sbjct: 124 KTVMSLLTRRDVIVVASVSCIYGAGEKEDYSKLAFYVNVGDKLSRKDILSNFVELLYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD I+I+PS++ ++A R+ +F ++++ I F PLT + + E++ ++ Sbjct: 184 DINFERGTFRVRGDVIDIYPSYMRNLAIRIELFDDEVDRIVMFDPLTNRVVEERESVAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + ++T + A+K IKEELK R+ + G+LLEAQR+E+R +D+EM+E TG+C Sbjct: 244 PANFFITTKEKKERAIKSIKEELKERIEYFKSRGKLLEAQRIEERTNFDIEMIEQTGTCA 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ + R PG+PP TL +Y D L+ +DESHVT+PQ+ GMYRGD+ RK TL +Y Sbjct: 304 GIENYSRHFSKREPGQPPGTLIDYFGNDFLVIIDESHVTLPQLKGMYRGDYSRKKTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE I VSATP +E+ G++VEQIIRPTGL++PPVE Sbjct: 364 GFRLPSALDNRPLKFEELMERWDQVIFVSATPDEFEVNLSNGVVVEQIIRPTGLMEPPVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ V+D+Y EI A Q+G ++L+T LTKRMAEDL+EY E ++ +YMHSE+ +E Sbjct: 424 VKPMDNAVDDLYSEIKAATQKGGKVLITTLTKRMAEDLSEYYNELGLKTKYMHSELNAIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +II DLR +FD ++G+NLLREGLDIPE LVAILDADKEGFLRS TSLIQT GRAAR Sbjct: 484 RAKIISDLRNDRFDCIIGVNLLREGLDIPEVNLVAILDADKEGFLRSTTSLIQTAGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEVIDPILLE 739 N SKVI YA+ +T S++ AIDE RRR+ Q E+NKKH I P++ VK K +++ L+ Sbjct: 544 NAESKVIFYANKMTDSMKKAIDEIKRRRKIQAEYNKKHGIEPKTIVKSKDNKMLQMCNLD 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ + + K +K L+K + A ++FE A + RDEI++LK Sbjct: 604 YMDT----LEEFDVGVKPKDIPKRIKQLQKLLKDAVKKMDFESAIKYRDEIEKLK 654 >gi|257875563|ref|ZP_05655216.1| excinuclease ABC [Enterococcus casseliflavus EC20] gi|257809729|gb|EEV38549.1| excinuclease ABC [Enterococcus casseliflavus EC20] Length = 665 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/657 (52%), Positives = 467/657 (71%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +I+ + +P +++A Sbjct: 12 FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 72 HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+GS Y++ +V L++G + +LL L++ Q++R Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I E LTG+ + + E + I+ Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESHVT+PQ+ GMY GD RK L +Y Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQVRGMYNGDRARKQMLVDY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E +Q +I +QIIRPTGL+DP +E Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQTDTVI-QQIIRPTGLLDPVIE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+Y E I+V+Y+HS++KTLE Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S+Q AIDET RRR Q +N++H I P+++ I E+ D I + Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTI---IKEIRDLIAITK 607 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A A LS+++ L L K+M AA L+FE AA +RD I LK++ Sbjct: 608 VAEETGEYTATSYEELSREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664 >gi|325002615|ref|ZP_08123727.1| excinuclease ABC subunit B [Pseudonocardia sp. P1] Length = 742 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/692 (51%), Positives = 472/692 (68%), Gaps = 32/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D P+GDQP AIA L + + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 49 FQVVSDLQPAGDQPTAIADLDRRLRAAEQDIVLMGATGTGKSATTAWLIEQQQRPTLVMA 108 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH Sbjct: 109 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDDVERLRH 168 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V L +G+ VE+ LL LV QY R Sbjct: 169 SATMNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVALAVGEEVERDRLLRLLVDIQYTRN 228 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ FG++IE + PLTG + V I+I+ Sbjct: 229 DMSFTRGTFRVRGDTVEIIPAY-EELALRIEFFGDEIEALYHLNPLTGDTVEQVGEIRIF 287 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+ EL+ RL +LE +G+LLEAQRL R YD+EM+ G C Sbjct: 288 PATHYVAGPDRMERAVSDIEAELEQRLEQLENQGKLLEAQRLRMRTQYDIEMIRQVGFCS 347 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 348 GIENYSRHIDGRGAGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 407 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +EL + G VEQ+IRPTGLVDP V Sbjct: 408 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGPYELNRTGGEFVEQVIRPTGLVDPEVV 467 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E I+VRY+HSEV TL Sbjct: 468 VKPTKGQIDDLVAEIRDRTERDERVLVTTLTKKMAEDLTDYLLELGIKVRYLHSEVDTLR 527 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 528 RVELLRQLRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 587 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+Q AIDET RRR KQ+ +N + I+PQ ++++I +++D + E Sbjct: 588 NVSGQVHMYADRITDSMQYAIDETDRRRAKQVAYNTERGIDPQPLRKRIADILDQVYREA 647 Query: 741 AATTNISIDAQQLSLSKKK------GKAH-----------------------LKSLRKQM 771 T ++ + + S+ K G+A ++ + QM Sbjct: 648 EDTESVPVGGSGRNASRGKRASGEAGRAPSAGSAGVPAKDTAGMPRAELADLIQQMNDQM 707 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR+RDEI LK +G+D Sbjct: 708 LTAARDLQFELAARLRDEIGDLKKE--LRGMD 737 >gi|228961392|ref|ZP_04123006.1| UvrABC system protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798277|gb|EEM45276.1| UvrABC system protein B [Bacillus thuringiensis serovar pakistani str. T13001] Length = 658 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDCIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|218248416|ref|YP_002373787.1| excinuclease ABC subunit B [Cyanothece sp. PCC 8801] gi|257061482|ref|YP_003139370.1| excinuclease ABC subunit B [Cyanothece sp. PCC 8802] gi|218168894|gb|ACK67631.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 8801] gi|256591648|gb|ACV02535.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 8802] Length = 667 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/669 (53%), Positives = 470/669 (70%), Gaps = 20/669 (2%) Query: 138 ITF--FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 +TF F++Q + P GDQP AIAQLL + + + Q LLG TG+GKTF++A VIE + +P Sbjct: 1 MTFSSFRLQAPFEPQGDQPQAIAQLLASLQAGNRFQTLLGATGTGKTFSIASVIEKVGKP 60 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++I Sbjct: 61 TLVLAHNKTLAAQLCNELRQFFPDNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEI 120 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 D +RHSATRSL ER D IVV+S+SCIYG+G Y + V L++G V+Q+ LL LV Sbjct: 121 DMLRHSATRSLFERKDVIVVASISCIYGLGMPSEYLKAAVPLEVGQEVDQRNLLRELVGI 180 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R DI + RG FRV GD +EI P++ ED RV FG++IE I P+TG+ +++++ Sbjct: 181 QYSRNDIELQRGRFRVKGDVLEIVPAY-EDRIIRVEFFGDEIEAIRYLDPVTGEILQSLK 239 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + IY H+VTP + A + IK EL+ ++ LEKEG+LLEAQR+ QR YDL++L+ Sbjct: 240 MVNIYPARHFVTPDEQIEIACQQIKVELEEQIEALEKEGKLLEAQRISQRTRYDLDLLQE 299 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C +ENYSRYL GR GEPP L +Y P+D LL VDESHVT+PQ+ GMY GD RK Sbjct: 300 VGYCNGVENYSRYLAGRKAGEPPECLIDYFPQDWLLVVDESHVTVPQLRGMYNGDRSRKQ 359 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L ++GFRLPS DNRPL+ EE+ I VSATPG WE+EQ I+EQIIRPTG++ Sbjct: 360 VLIDHGFRLPSAADNRPLKSEEFWTKVNQCIFVSATPGDWEIEQSGDRIIEQIIRPTGVL 419 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + +R QV+D+ EI ++ R+L+T LTKRM+EDLTEYL ER ++V+Y+HSE Sbjct: 420 DPEIFVRPTEGQVDDLLGEIKQRVKRQERVLITTLTKRMSEDLTEYLSERGVKVQYLHSE 479 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 VK++ERIEI++ LR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTI Sbjct: 480 VKSIERIEILQSLRKGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTI 539 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAAR+VN + ILYAD +TKS+ AI+ET RRR Q+ HNK +NI P+ + +K I Sbjct: 540 GRAARHVNGQAILYADNLTKSMIKAIEETERRRGIQMAHNKINNITPKPIIKKETNSILS 599 Query: 736 ILLEDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 L +IS +++QQL L +K ++ L QM AA L FEEAA+ Sbjct: 600 FL-------DISRRLNSQQLEEIYEKSDDLPLEKVPELIQQLENQMKEAAQKLEFEEAAK 652 Query: 786 IRDEIKRLK 794 RD IK L+ Sbjct: 653 YRDRIKNLR 661 >gi|325125372|gb|ADY84702.1| UvrB [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 680 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI QL G + +K Q+L G TG+GKT+TMA VI M +P +V+ Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ RND IVV+SVSCIYG+G Y ++ + G E+ LL LV QY R Sbjct: 130 AATSALMSRNDAIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD +E+FPS D A+R+ FG++I+ I E PLTG+ ++I ++ Sbjct: 190 DIDLQRGRFRVRGDVVEVFPSGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGGRDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ IK E+ ++ + EKEG+LLEA+R++QR TYDLEML G Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R GEPP TL ++ P+DSL+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL + IVEQ+IRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ LIQT+GRAAR Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S+++AIDET RRR Q+++N++H I P+++ + + ++I + + Sbjct: 549 NANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDIISVVKADK 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + S D L+ K+ K + +L++QM AA L+FE AA +RD I L+ S Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665 >gi|262202763|ref|YP_003273971.1| excinuclease ABC subunit B [Gordonia bronchialis DSM 43247] gi|262086110|gb|ACY22078.1| excinuclease ABC, B subunit [Gordonia bronchialis DSM 43247] Length = 718 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/689 (51%), Positives = 475/689 (68%), Gaps = 29/689 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L + I EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSEYEPAGDQPEAIDDLERRIRGGEKDIVLLGATGTGKSATTAWLIERVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V++++G ++++ LL LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVEVEVGANIDRDALLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R V++++I+ Sbjct: 208 DQSFTRGGFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + AM I+ EL+ RL +LE +G+LLEAQRL R TYDLEM+ G C Sbjct: 267 PATHYVAGPERMERAMTSIEAELEERLADLEGKGKLLEAQRLRMRTTYDLEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y P+D LL +DESHVT+PQI GMY GD RK L EY Sbjct: 327 GIENYSRHIDGRAAGSAPATLIDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL ++E+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWDEFVDRIGQTVYLSATPGPYELGQANGEFVEQVIRPTGLVDPQVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLVHEIRERTERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRSGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YADTIT S++ AI+ET RRREKQ+ +N +H I+P+ +++KI +++D + E Sbjct: 567 NVSGEVHMYADTITDSMRNAIEETERRREKQVAYNTEHGIDPKPLRKKIADILDQVYREA 626 Query: 740 DAATTNISIDAQQLSLSK-------KKGKAH------------------LKSLRKQMHLA 774 D T + + S + K G A + L QM A Sbjct: 627 DDDTVKVGGSGRNASRGRRAQGEVSKAGSAGVIEKRDVSSMPRAELADLVAQLTDQMMNA 686 Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 A +L FE A R+RDEI LK +G+D Sbjct: 687 ARDLQFELAGRLRDEIADLKKE--LRGMD 713 >gi|256379520|ref|YP_003103180.1| excinuclease ABC subunit B [Actinosynnema mirum DSM 43827] gi|255923823|gb|ACU39334.1| excinuclease ABC, B subunit [Actinosynnema mirum DSM 43827] Length = 723 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/709 (49%), Positives = 489/709 (68%), Gaps = 32/709 (4%) Query: 124 TPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179 TP ++ S + DI F++ +++ PSGDQPAAIA+L + + E+ +LLG TG+ Sbjct: 13 TPVKAHSAHRPVSDIPRSAGEFRVVSEFTPSGDQPAAIAELERRLRGGERDVVLLGATGT 72 Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 GK+ T A ++E +QRP +VMAPNK LAAQL +E ++ FP NAVEYFVSYYDYYQPEAY+P Sbjct: 73 GKSATTAWLVEKVQRPTLVMAPNKTLAAQLANELRDLFPENAVEYFVSYYDYYQPEAYIP 132 Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299 ++DTYIEK+SS+NE ++R+RHSAT SLL R D IVV+SVSCIYG+G+ ++Y + L++ Sbjct: 133 QSDTYIEKDSSVNEDVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQAYLDRSIPLRV 192 Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359 G V++ LL +LV QY R DI RGTFRV GD++EI PS+ E++A RV FG++++ Sbjct: 193 GGEVDRDVLLRALVDVQYARNDIAFNRGTFRVRGDTVEIIPSY-EELAIRVEFFGDEVDR 251 Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419 + +PLTG ++ V+ ++I+ +HY + A+K I+ EL+ RL +LE++G+LLEA Sbjct: 252 LYYLHPLTGDVVKEVQELRIFPATHYAAGPERMEIAIKGIEVELEQRLADLERQGKLLEA 311 Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479 QRL R TYD+EM+ G C IENYSR++ GR+ G P TL +Y P+D LL +DESHVT Sbjct: 312 QRLRMRTTYDIEMMRQVGFCSGIENYSRHIDGRDAGSAPATLIDYFPDDFLLVIDESHVT 371 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 +PQI MY GD RK L ++GFRLPS +DNRPL +EE+ TI +SATPG++EL Q Sbjct: 372 VPQIGAMYEGDASRKRNLVDHGFRLPSALDNRPLTWEEFADRVGQTIYLSATPGNYELGQ 431 Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599 G VEQ+IRPTGLVDP V ++ Q++D+ EI A++ R+L+T LTK+M+EDLT Sbjct: 432 AGGEFVEQVIRPTGLVDPQVVVKPTEGQIDDLVHEIRARAERDERVLVTTLTKKMSEDLT 491 Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 +YL E IRVRY+HS++ TL R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDA Sbjct: 492 DYLLELGIRVRYLHSDIDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDA 551 Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 DKEGFLRS TSLIQTIGRAARNV+ +V +YAD +T S++ AI+ET RRR KQ+ +N++ Sbjct: 552 DKEGFLRSTTSLIQTIGRAARNVSGEVHMYADRVTDSMRNAIEETNRRRAKQVAYNEERG 611 Query: 720 INPQSVKEKIMEVIDPILLE-------------------------DAATTNISIDAQQLS 754 I+PQ +++KI ++++ + E A ++ + S Sbjct: 612 IDPQPLRKKITDILEQVYAEVEDDVAPGGSGRNATRGKRAAGEPGKAGSSGVLAGRDVGS 671 Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 +++ + ++ L QM AA L FE A R+RDEI LK +G+D Sbjct: 672 MARAELADLVQQLTDQMMNAARELQFELAGRLRDEIADLKKE--LRGMD 718 >gi|15672544|ref|NP_266718.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis Il1403] gi|13878836|sp|Q9CI06|UVRB_LACLA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|12723449|gb|AAK04660.1|AE006290_5 excinuclease ABC subunit B [Lactococcus lactis subsp. lactis Il1403] gi|326406063|gb|ADZ63134.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis CV56] Length = 692 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/684 (51%), Positives = 475/684 (69%), Gaps = 33/684 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AIA+L+ I + EK Q+L G TG+GKT+TM++VI +P +VMA Sbjct: 11 FELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 71 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y +V L+ G + + +LL+ LV Q++R Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + ++ I+ EL+ +L EG+LLEAQRLEQR YD+EML G C Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD RK L Y Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP VE Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ A++ R+ +T LTK+M+EDLT Y E I+V+YMHS++KTLE Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549 Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711 N VILY+D IT+S++ A+DET RRRE Q Sbjct: 550 NSEGHVILYSDMAKALDENDPVDKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQ 609 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771 + +N++H I PQ++K++I ++I D+ +DA +++KK+ KA +K L K+M Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIE-EVDAS--AMTKKERKALVKKLEKEM 666 Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795 AA L+FE AA++RD + L++ Sbjct: 667 QQAASALDFEGAAQLRDMVLELRA 690 >gi|116074361|ref|ZP_01471623.1| excinuclease ABC subunit B [Synechococcus sp. RS9916] gi|116069666|gb|EAU75418.1| excinuclease ABC subunit B [Synechococcus sp. RS9916] Length = 678 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/678 (52%), Positives = 464/678 (68%), Gaps = 20/678 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P GDQP AIAQL++G++ ++ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 FDLSAPYTPKGDQPTAIAQLVEGVNGGQRYQTLLGATGTGKTFTMANVIAKTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+S++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKASVKFQVGESLDLRGSLRDLVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++E I IY Sbjct: 184 DTDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSMEAINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L+TA+K I+ ELK RL L EG+LLEAQRLEQR TYDLEML G C Sbjct: 243 PAKHFVTPKERLDTAIKDIRSELKERLDFLNTEGKLLEAQRLEQRTTYDLEMLGQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR PG P L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREPGTAPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ +E+ T+ VSATPG+WE+E G + EQ+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKGDEFWTKARQTVFVSATPGNWEMEVSSGQVAEQVIRPTGVLDPVVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A++ R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++E Sbjct: 423 VRPTTGQVDDLLGEIRSRAKKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 +V +LYAD +T S+ AI+ET RRR+ Q +N KH I P + +K I Sbjct: 543 HVEGVALLYADNMTDSMAKAIEETERRRKIQQTYNDKHGIVPTAAGKKASNSILSFLELS 602 Query: 734 ----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 D + + A I D++ ++L + L +M AA L+FEEA Sbjct: 603 RKLKTEGPDADLVQVAGQAVKAIEDDSEGMALDAL--PELIDQLEVRMKEAAKKLDFEEA 660 Query: 784 ARIRDEIKRLKSSPYFQG 801 A +RD IK+L+ +G Sbjct: 661 ANLRDRIKQLRQKLVGKG 678 >gi|296505583|ref|YP_003667283.1| excinuclease ABC subunit B [Bacillus thuringiensis BMB171] gi|296326635|gb|ADH09563.1| excinuclease ABC subunit B [Bacillus thuringiensis BMB171] Length = 658 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|228923891|ref|ZP_04087168.1| UvrABC system protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835690|gb|EEM81054.1| UvrABC system protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 658 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ L EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEEHLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|229112572|ref|ZP_04242109.1| UvrABC system protein B [Bacillus cereus Rock1-15] gi|229147691|ref|ZP_04276034.1| UvrABC system protein B [Bacillus cereus BDRD-ST24] gi|228635704|gb|EEK92191.1| UvrABC system protein B [Bacillus cereus BDRD-ST24] gi|228670952|gb|EEL26259.1| UvrABC system protein B [Bacillus cereus Rock1-15] Length = 658 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|145595652|ref|YP_001159949.1| excinuclease ABC subunit B [Salinispora tropica CNB-440] gi|145304989|gb|ABP55571.1| Excinuclease ABC subunit B [Salinispora tropica CNB-440] Length = 701 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/688 (52%), Positives = 471/688 (68%), Gaps = 28/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P+GDQPAAI L + + ++ +LLG TG+GK+ T A +IE +QRP +V+A Sbjct: 12 FQVVSDFQPAGDQPAAIDDLERRVRRGDRHTVLLGATGTGKSATTAWLIERLQRPTLVLA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQL EF P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH Sbjct: 72 PNKTLCAQLAKEFSELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VS IYG+G+ E Y V++ G +++ +LL LV QY R Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVVTGQELDRDQLLRRLVDIQYARN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ +FG+++E + PLTG +R V+ + I+ Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVERLYYLNPLTGDVVREVDHLLIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY + A++ I+ EL RL ELE+ G LLEAQRL R TYD+EM+ G C Sbjct: 251 PATHYAAGPERMERAIRDIEAELGERLAELEQRGSLLEAQRLRMRTTYDIEMMRQVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PG PP L +Y P+D L VDESHVTIPQI GMY GD RK L ++ Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQIGGMYEGDASRKRMLIDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRF+E+ + +SATPGSWELE QG VEQ+IRPTGLVDP V Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGSWELEHAQGEYVEQVIRPTGLVDPEVV 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDL++YL E IRVRY+HSEV TL Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ A+ ET RRR KQ+ HN+ H I+P+ +++KI +++D I E Sbjct: 551 NVSGQVHMYADKITPSMAEAVGETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610 Query: 741 AAT-TNISIDAQQLSLSK------------------KKGKAH------LKSLRKQMHLAA 775 T T + +QLS K ++G A ++ L QM AA Sbjct: 611 EETDTRVGGAVRQLSRGKAPVKETRSSRSRAAAGPAREGMARAELAELIQELNGQMLAAA 670 Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803 L FE AARIRDEI LK +G+D Sbjct: 671 RELQFELAARIRDEISELKKE--LRGMD 696 >gi|315604240|ref|ZP_07879306.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 180 str. F0310] gi|315313946|gb|EFU61997.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 180 str. F0310] Length = 696 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/676 (52%), Positives = 474/676 (70%), Gaps = 24/676 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L I E+ +L+G TG+GK+ T A +IE +QRPA+++ Sbjct: 13 FEVISPYTPSGDQPKAIRELAARIRDGEQDVVLMGATGTGKSATTAWLIEELQRPALILE 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 73 PNKTLAAQLAAEFRALLPSNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y +++L G V++ LL V QY R Sbjct: 133 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELSRGMVVDRDALLRRFVAMQYVRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEI P + E++A R+ MFG++I+ ++ +PLTG I VE ++ Sbjct: 193 DMAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGDVISEVEHTYLF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL L + +L+E QRL R T+DLEML+ GSC Sbjct: 252 PASHYVAGEERMKKAIASIEDELEERLAWLHAQNKLVEEQRLRMRTTFDLEMLKEIGSCS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI M+ GD RK TL +Y Sbjct: 312 GVENYSRHIDGRGPGTPPHTLLDYFPEDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL++ G+ VEQIIRPTGLVDP V Sbjct: 372 GFRLPSAMDNRPLKWDEFTARIGQTVYLSATPGPYELDRSDGV-VEQIIRPTGLVDPLVV 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +++ L ++ R+L+T LTK+MAE+LT YL ER ++V Y+HS+V TL Sbjct: 431 VKPTQGQIDDLLEQVRLRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSDVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ +V +YAD IT S++ AI ET RRRE Q+ +N++H I+PQ +++KI +V D + Sbjct: 551 NVSGEVHMYADNITDSMREAISETMRRREIQIAYNEEHGIDPQPLRKKISDVTDMLAREQ 610 Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAH-------------LKSLRKQMHLAADNL 778 LLE S + S + G AH ++ L QM AA++L Sbjct: 611 VDTQTLLEGGYRKEKSAKERGESRAVGAGGAHSLGARAESELADLIEELSAQMMTAAEHL 670 Query: 779 NFEEAARIRDEIKRLK 794 FE AAR+RDEI+ LK Sbjct: 671 QFEVAARLRDEIEDLK 686 >gi|297161422|gb|ADI11134.1| excinuclease ABC subunit B [Streptomyces bingchenggensis BCW-1] Length = 718 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/708 (50%), Positives = 480/708 (67%), Gaps = 49/708 (6%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQP AIA L + I + E +LLG TG+GK+ T A +IE Sbjct: 4 VSQIERKVAPFEVVSPYQPSGDQPTAIADLGRRIRAGESDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V LK+G +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGQEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYARNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + E + ++ +HYV + A+ I+ EL+ L LEK+G+LLEAQRL R TYD+ Sbjct: 243 ITDDEELYVFPATHYVAGPERMERAIAGIESELEQTLARLEKQGKLLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G+C IENYS ++ GR PG PP TL +Y P+D LL +DESHVT+PQI MY GD Sbjct: 303 EMMRQIGTCSGIENYSLHIDGREPGSPPHTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL E+GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLIEHGFRLPSALDNRPLKWEEFLERTGQTVYLSATPGPYELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y+ E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ NK + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGIDPQPLRKKIG 601 Query: 731 EVIDPILLEDAATTNI------SIDAQQLSLSKKKGKAHLKSLRKQ-------------- 770 +++ I E+ T + D + +K + KA + +L Q Sbjct: 602 DIVATIAREEIDTKELLGTGYRKTDGKG---AKGQAKAPVPALAGQRAGSAGKGAKGAKG 658 Query: 771 ------------------------MHLAADNLNFEEAARIRDEIKRLK 794 M AA L FE AAR+RDE+ LK Sbjct: 659 AKDGQLTDRPAAELAELIEEMTDRMRAAAAELQFEIAARLRDEVGELK 706 >gi|326790740|ref|YP_004308561.1| excinuclease ABC subunit B [Clostridium lentocellum DSM 5427] gi|326541504|gb|ADZ83363.1| excinuclease ABC, B subunit [Clostridium lentocellum DSM 5427] Length = 660 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/656 (52%), Positives = 475/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L+ I+ K Q LLGVTGSGKTFTMA +IE +Q+P +++A Sbjct: 4 FEIVSEFKPTGDQPQAITELVTSINEGHKYQTLLGVTGSGKTFTMANIIEKVQKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+NE+ID++RH Sbjct: 64 HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IV++SVSCIYG+G YS+ ++ ++ G +++ ++L L++ QY R Sbjct: 124 SATAALCEREDVIVIASVSCIYGLGDPIDYSEQVLSIRTGMEMDRDDVLRKLIQIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +R +FRV GD++EI P+ + + A R+ FG++I+ I+E PLTG E + I+ Sbjct: 184 DMDFVRASFRVRGDTVEIIPAGMSEKAIRIEFFGDEIDRIAEIDPLTGSVFGYREHVVIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y + A++ I++EL+ RL E ++E +LLEAQRL QR +D+EML G C Sbjct: 244 PASFYAISSEKMEVALQRIEKELEERLKEFKEEDKLLEAQRLSQRTQFDMEMLREMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L+GR GE P TL +Y P+D L+ +DESH+TIPQ+ MY GD RK L +Y Sbjct: 304 GVENYSRHLSGREEGETPFTLLDYFPKDFLMIIDESHMTIPQVRAMYNGDRARKTVLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ + VSATP +ELE I EQ+IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLKFDEFESKINQLLFVSATPAQYELEHSLA-IAEQLIRPTGLLDPVIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN +G ++++T LTKRMAEDLT Y+ E ++++Y+HS++ TLE Sbjct: 423 LRPVKGQIDDLLGEINQIVAKGEKVMITTLTKRMAEDLTTYMGELGVKIKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+ FDVLVGINLLREGLDIPE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RIEIIRDLRMDVFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +TKS++ AI ET RRR+ Q E+N+ H I P+++K+KI ++I D Sbjct: 543 NANGRVIMYADQVTKSMKNAISETARRRQIQEEYNEAHGIVPETIKKKIRDLIIATKTAD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + S+SK++ + +K + K M AA L FE+AA +RD + +LK + Sbjct: 603 KEKGLLA-EKDPESMSKEELEKTMKKVEKDMKKAATELQFEKAAELRDVLIKLKQT 657 >gi|229153321|ref|ZP_04281499.1| UvrABC system protein B [Bacillus cereus m1550] gi|228629925|gb|EEK86576.1| UvrABC system protein B [Bacillus cereus m1550] Length = 658 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADCITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|281491028|ref|YP_003353008.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis KF147] gi|281374786|gb|ADA64306.1| Excinuclease ABC, subunit B [Lactococcus lactis subsp. lactis KF147] Length = 692 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/684 (51%), Positives = 475/684 (69%), Gaps = 33/684 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AIA+L+ I + EK Q+L G TG+GKT+TM++VI +P +VMA Sbjct: 11 FELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 71 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y +V L+ G + + +LL+ LV Q++R Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 191 DIDFQRGCFRVRGDIVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + ++ I+ EL+ +L EG+LLEAQRLEQR YD+EML G C Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD RK L Y Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP VE Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ A++ R+ +T LTK+M+EDLT Y E I+V+YMHS++KTLE Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549 Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711 N VILY+D IT+S++ A+DET RRRE Q Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQ 609 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771 + +N++H I PQ++K++I ++I D+ +DA +++KK+ KA +K L K+M Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIE-EVDAS--AMTKKERKALVKKLEKEM 666 Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795 AA L+FE AA++RD + L++ Sbjct: 667 QQAASALDFEGAAQLRDMVLELRA 690 >gi|113952727|ref|YP_729312.1| excinuclease ABC subunit B [Synechococcus sp. CC9311] gi|123132795|sp|Q0IE10|UVRB_SYNS3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|113880078|gb|ABI45036.1| excinuclease ABC, B subunit [Synechococcus sp. CC9311] Length = 679 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/672 (53%), Positives = 462/672 (68%), Gaps = 22/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ Y P GDQP AI++L++G++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 YELSAPYTPKGDQPTAISKLVEGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V K+G+++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFKVGETLNLRGSLRDLVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +EI P++ +D RV +FG+++E I P TG+ +++++ I IY Sbjct: 184 DTEAGRGRFRVKGDVLEIGPAY-DDRLVRVELFGDEVEAIRYVDPTTGEILQSLDAISIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ LN A+K I+ ELK RL L EG+LLEAQRLEQR TYDLEML+ G C Sbjct: 243 PAKHFVTPKERLNDAVKAIRSELKERLEFLNGEGKLLEAQRLEQRATYDLEMLQQIGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR PG P L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREPGSAPECLIDYFPDDWLLIVDESHVTCSQLLAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ VSATPG+WE+E +G + EQ+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKSEEFWSKAKQTVFVSATPGNWEMEVSEGQVAEQVIRPTGVLDPLVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++E Sbjct: 423 VRPTTGQVDDLLGEIRDRASKKQRVLVTTLTKRMAEDLTDYLAENKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V K +LYA+T+T S+ AI+ET RRR+ Q +N+KH I P + +K I L Sbjct: 543 HVEGKALLYAETMTDSMAKAIEETERRRKIQHTYNEKHGITPTAAGKKASNSILSFL--- 599 Query: 741 AATTNISIDAQQLSLSKKKGKA--------------HLKSLRKQMHL----AADNLNFEE 782 + + D L K GKA L L Q+ L +A L+FEE Sbjct: 600 ELSRKLKADGPDADLVKVAGKAVQALEEDVDGLALDALPELIDQLELKMKESAKKLDFEE 659 Query: 783 AARIRDEIKRLK 794 AA +RD IK+L+ Sbjct: 660 AANLRDRIKKLR 671 >gi|282882169|ref|ZP_06290808.1| excinuclease ABC, B subunit [Peptoniphilus lacrimalis 315-B] gi|281297934|gb|EFA90391.1| excinuclease ABC, B subunit [Peptoniphilus lacrimalis 315-B] Length = 671 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/654 (54%), Positives = 468/654 (71%), Gaps = 6/654 (0%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D F++ +DY P+GDQP AI +L++G++ K Q LLGVTGSGKTFTMA VIE +QRPA Sbjct: 8 DTVKFKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERVQRPA 67 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LA QL SE K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N++ID Sbjct: 68 LVIAHNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVNDEID 127 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++RHSAT SL ER D I+V+SVSCIYG+G Y + + L+ G ++ E++S LV Q Sbjct: 128 KLRHSATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKLVDIQ 187 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y R D RGTFRV GD +EIFP+ + + RV FG++I+ ISE LTG+ +R + Sbjct: 188 YVRNDFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLRLLTH 247 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 I SHY T + + A+ I+EEL+ RL L+ + +LLEAQRLEQR YDLEMLE Sbjct: 248 AYITPASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEMLEEM 307 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSR+L+ R G P TL +Y P+D + +DESH +IPQI GM+ GD RK T Sbjct: 308 GYCNGIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRSRKET 367 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L EYGFRLPS +DNRPLRF E+ + I VSATPG +E E + EQIIRPTGL+D Sbjct: 368 LVEYGFRLPSALDNRPLRFFEFESMMKQCIYVSATPGPYEREHEEN-SAEQIIRPTGLLD 426 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P + +R + Q++D+ EIN ++ R+L+T LTKRMAEDLT++ E I+ YMHS+V Sbjct: 427 PQIFVRPVKNQIDDLVSEINKTVEKKERVLVTTLTKRMAEDLTKHFKEIGIKATYMHSDV 486 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 +TLER++II+DLR K DVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT G Sbjct: 487 ETLERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSRTSLIQTAG 546 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARNV+ KVI+YAD IT+S++ IDET RRR+ Q +NK+H I P+S+ + I +V++ Sbjct: 547 RAARNVSGKVIMYADNITESMKETIDETNRRRKIQDAYNKEHGIVPKSIIKDIRDVLNTT 606 Query: 737 LLEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 L+ A +++S + +K + +A + +L+ QM+ AA+ L+FE+AA IRD Sbjct: 607 LV---AESDVSFKEEDFEDEFTKDEIQAMIDALKPQMYEAAEALDFEKAAEIRD 657 >gi|254384208|ref|ZP_04999552.1| UvrABC system protein B [Streptomyces sp. Mg1] gi|194343097|gb|EDX24063.1| UvrABC system protein B [Streptomyces sp. Mg1] Length = 711 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/704 (51%), Positives = 478/704 (67%), Gaps = 48/704 (6%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQPAAIA+L K I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V LK+G+ +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVSLKVGEEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + ++ SHYV + A+ I+ EL RL ELEK+G++LEAQRL R TYDL Sbjct: 243 ISEDRELYVFPASHYVAGPERMEKAVAGIEAELTERLAELEKQGKMLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS ++ R G P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMMRQIGSCSGIENYSLHMDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYLSATPGKYELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLIDPEVVVKPTEGQIDDLVHEIRARVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T +++ AI+ET RRREKQ+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKMTPAMEKAIEETNRRREKQVAYNTANGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGK----------------------------- 761 +++ I E+ T + L ++GK Sbjct: 602 DIVATIAREEVDTEEL------LGTGYRQGKEAKAPVPALGGRAAQAKGGKGAKGAKAAE 655 Query: 762 -------AHLKSLRKQ----MHLAADNLNFEEAARIRDEIKRLK 794 L SL +Q M AA L FE AARIRDE+ LK Sbjct: 656 ALTDRPAQELASLIEQMTERMRGAAAELQFEVAARIRDEVGELK 699 >gi|317052706|ref|YP_004113822.1| excinuclease ABC subunit B [Desulfurispirillum indicum S5] gi|316947790|gb|ADU67266.1| excinuclease ABC, B subunit [Desulfurispirillum indicum S5] Length = 660 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+G QP AI ++ + I K Q+LLGVTGSGKT+TMAK++EA+Q+P +V+A Sbjct: 3 FRVVSPYSPAGSQPQAIEKITRHITEGTKHQVLLGVTGSGKTYTMAKIVEAVQKPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++IDR+RH Sbjct: 63 HNKTLAAQLYQEFKEFFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDKIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++V+SVSCIYG+GS E Y M++ + + V+ +EL LV+ QY R Sbjct: 123 SATRSILERRDVLIVASVSCIYGLGSAEFYLDMVIPVDVDSEVDMEELAGELVRVQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFR GD IEIFPS+ D A R+ FG+ +E I E PLTG+K R++E ++IY Sbjct: 183 DTDFRRGTFRRRGDIIEIFPSYEIDSAIRIEFFGDTVEAIWEIDPLTGEKRRSIEKLRIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV + + A+ IK +LK RL E +LLEAQR+EQR +D+EMLE G CQ Sbjct: 243 PNSHYVADKSIIERAIGSIKADLKKRLDYFRSENKLLEAQRIEQRTNFDIEMLEEFGFCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ GR+ GEPP TL Y+P+D+L+F+DESHVTIPQ+ GMY GD RK TL +Y Sbjct: 303 GIENYSRYVDGRSEGEPPHTLLSYMPDDALIFIDESHVTIPQVRGMYNGDRSRKMTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL FEE+N + P + VSATP +E E I E IIRPTGL+DP +E Sbjct: 363 GFRLPAALDNRPLNFEEFNSILPQAVYVSATPAEYEKELSGHTITELIIRPTGLLDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+++ E+ +G + L+T LT R++E+L++YL + I+V+Y+HS++ T+E Sbjct: 423 VRPSTGQVDNLVFELKKVIAEGGKALVTTLTIRLSENLSDYLIQLGIKVKYLHSKIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG +DV+VGINLLREGLDIPE LVAILDADKEGFLRS+ SL+QT GRAAR Sbjct: 483 RSEIIRDLRLGVYDVVVGINLLREGLDIPEVQLVAILDADKEGFLRSERSLMQTAGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ +VI+Y D +T+S+Q ID T +RR Q +N++H I PQ + + I + + P L E+ Sbjct: 543 NLKGRVIMYGDKVTQSMQSVIDTTAKRRAIQQAYNEEHGITPQGISKAIGKDLIPELAEE 602 Query: 741 -AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D QL+ + + K + L+ +M A+ L+FE AA +RDEI RL+ Sbjct: 603 RQERLQGKVDIGQLADYQIREK--IVELQAKMQRHAEELDFESAASVRDEIFRLQ 655 >gi|228968260|ref|ZP_04129258.1| UvrABC system protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228791433|gb|EEM39037.1| UvrABC system protein B [Bacillus thuringiensis serovar sotto str. T04001] Length = 658 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|313123323|ref|YP_004033582.1| excinuclease ABC subunit b [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279886|gb|ADQ60605.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 680 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/657 (52%), Positives = 467/657 (71%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI QL G + +K Q+L G TG+GKT+TMA VI M +P +V+ Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ RND IVV+SVSCIYG+G Y+ ++ + G E+ LL LV QY R Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A+R+ FG++I+ I E PLTG+ ++I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ IK E+ ++ + EKEG+LLEA+R++QR TYDLEML G Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R GEPP TL ++ P+DSL+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q IVEQ+IRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSR-IVEQVIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ LIQT+GRAAR Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S++LAIDET RRR Q+++N++H I P+++ + + ++I + + Sbjct: 549 NANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + S D L+ K+ K + +L +QM AA L+FE AA +RD I L+ S Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLNEQMQDAAKRLDFESAANLRDAIIELEGS 665 >gi|323697700|ref|ZP_08109612.1| excinuclease ABC, B subunit [Desulfovibrio sp. ND132] gi|323457632|gb|EGB13497.1| excinuclease ABC, B subunit [Desulfovibrio desulfuricans ND132] Length = 667 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/662 (51%), Positives = 467/662 (70%), Gaps = 13/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y GDQP A+A+L+ G+ + + Q+LLG TG+GKTFTMA V+ + RPA+V+A Sbjct: 4 FELVSEYTLKGDQPQAVAELVAGLGAGVRDQVLLGATGTGKTFTMANVVATLNRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FPHNAVEYFVSYYDYYQPEAY+P +D YIEK+SSIN+ ID++RH Sbjct: 64 PNKTLAAQLYTEFRGLFPHNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D ++V+SVSCIYG+GS + Y++M++ ++ G ++ + LL LV+ Y+R Sbjct: 124 AATHALLTRKDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQTMAMESLLGRLVEIHYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EI P++ + A R+ FG++I+ ISE PLTG+ + IY Sbjct: 184 DYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIDSISETDPLTGEVKDRLRKTVIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V+ R L+ AM I++EL+ RL L++ +L+EAQRLEQR YDLE +E G C Sbjct: 244 PGSHFVSDRDNLDRAMHDIRDELQSRLAYLKRGNKLVEAQRLEQRTQYDLETIEELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR G+PP TL +Y P+D +LFVDESH+ +PQ+ GMYRGD RK TL ++ Sbjct: 304 GIENYSRHLDGRVEGQPPATLLDYFPDDFILFVDESHIALPQVGGMYRGDRSRKTTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ + VSATPG EL+ QG++VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLNYEEFQERIHQAVYVSATPGPLELDLAQGVVVEQIIRPTGLLDPQIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E + R+L+T LTKRMAEDL +YL + ++ RY+HS++ TLE Sbjct: 424 VRKTQGQIDDLLAECKKRQSRDERVLVTTLTKRMAEDLNDYLNQMGVQSRYLHSDIDTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II+ LR G+F VLVGINLLREGLDIPE LVAILD DKEGFLRS SL+QT GRAAR Sbjct: 484 RMAIIQALREGEFFVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSTRSLVQTFGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 N + +VILYAD +T S+ A+ ET RRREKQ +N++H I P ++++K+ + + Sbjct: 544 NADGRVILYADKVTDSMAEAMGETERRREKQEAYNREHGITPTTIRKKVDNLFGDLGGHG 603 Query: 738 -----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + AA + A Q +L+K +K L ++M AA L FE AA +RD I R Sbjct: 604 DHGGTVAPAAEDGVDYGADQKTLNKT-----VKRLEREMREAAKELEFERAAELRDRIAR 658 Query: 793 LK 794 ++ Sbjct: 659 IR 660 >gi|229181421|ref|ZP_04308749.1| UvrABC system protein B [Bacillus cereus 172560W] gi|228601996|gb|EEK59489.1| UvrABC system protein B [Bacillus cereus 172560W] Length = 658 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|229193407|ref|ZP_04320355.1| UvrABC system protein B [Bacillus cereus ATCC 10876] gi|228590062|gb|EEK47933.1| UvrABC system protein B [Bacillus cereus ATCC 10876] Length = 658 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|213962077|ref|ZP_03390342.1| excinuclease ABC, B subunit [Capnocytophaga sputigena Capno] gi|213955430|gb|EEB66747.1| excinuclease ABC, B subunit [Capnocytophaga sputigena Capno] Length = 665 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/665 (52%), Positives = 468/665 (70%), Gaps = 17/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI QL+KGI +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A Sbjct: 3 FNIVSDFAPTGDQPQAIDQLVKGIERDDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTTGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D +VV+SVSC+YGIG+ + + ++ +K GD + + +L+ LV+ Y R Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITIKQGDILPRTKLMHRLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FR+ GD +++FP + +D A+R+ FG++IEEI +F P T Q + E++ I Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNQVLDRYESLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ E G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLMKQVEFFEASGKALEAKRLKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL+Q QG+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ RIL+T LTKRMAE+LT+YL IR RY+HS+V TL Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN K I+YAD IT S+Q ID+T RREKQ+ +NK HNI PQ + +KI + Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPIT 601 Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 DP E A +AQ + LS K+ + +K RK M AA L+F +AA+ RDE Sbjct: 602 EFHYDPSFKERTAA-----EAQSVYLSAKELEKKIKETRKLMETAAKELDFVKAAQYRDE 656 Query: 790 IKRLK 794 +KRL+ Sbjct: 657 LKRLQ 661 >gi|148657804|ref|YP_001278009.1| excinuclease ABC subunit B [Roseiflexus sp. RS-1] gi|148569914|gb|ABQ92059.1| excinuclease ABC, B subunit [Roseiflexus sp. RS-1] Length = 670 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/658 (52%), Positives = 468/658 (71%), Gaps = 4/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AIAQL+ GI + K Q LLG TG+GKT TMA V ++RPA+VMA Sbjct: 3 FRIEAPFQPAGDQPKAIAQLVAGIRAGYKHQTLLGATGTGKTLTMAHVFSQLERPALVMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L +QLY+EF+ P AVE F+SYYD Y PEAYVP D YIEKE+ INE+IDR+RH Sbjct: 63 HNKTLVSQLYAEFRELLPDAAVEMFISYYDIYTPEAYVPSKDLYIEKEAEINEEIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++L R D ++V+SVS IYG+GS Y Q+++ +++G+ + +LL L+ Q++R Sbjct: 123 AATQALFTRRDVLIVASVSAIYGLGSPHEYGQVVIPIRVGEVRNRDKLLRQLLDLQFERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+++IFP++ +++A RV +G+++E I+EF PLTG+ + N + IY Sbjct: 183 DVDFHRGTFRVRGDTLDIFPAN-QEIALRVEFWGDEVERITEFDPLTGEVLLNRTAVDIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T TL A+ I+ EL+ R+ ELE++G+ LEA RL+QR YDLEML G C Sbjct: 242 PAKHFITTAETLKLAIADIQAELEARVAELEQQGKFLEAARLKQRTNYDLEMLSEVGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R G+ P TL +Y P+D +LFVDESH+T+PQI GMY GD RK TL EY Sbjct: 302 GIENYSRHLDRRAAGQTPWTLLDYFPDDFILFVDESHITLPQIRGMYAGDRSRKETLVEY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ I VSATPG +E E IVEQIIRPTGL+DP VE Sbjct: 362 GFRLPSALDNRPLRFDEFERHIHQAIYVSATPGPYEYEHS-AQIVEQIIRPTGLLDPIVE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI Q+G R L+T LTKRMAEDL +YL E IR Y+HS+++TLE Sbjct: 421 VRPTRGQIDDLVGEIKRRVQKGQRALVTTLTKRMAEDLADYLKEMGIRTSYLHSDIETLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS +SLIQ IGRAAR Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSGSSLIQIIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 ++ VI+YADTIT+S++ AIDET RRR Q +N++HNI P + + + ++ D + + Sbjct: 541 HIEGTVIMYADTITQSMRTAIDETNRRRAIQEAYNREHNITPVGISKAVRDLTDRVRKVA 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E+ ++ +L + K + +K L KQM AA +L FE+AA +RD+I L+ + Sbjct: 601 EERGVYQVAEAPAELPIPKDEIVKLIKELEKQMKQAAKDLAFEKAAALRDQIVELRRT 658 >gi|313901314|ref|ZP_07834801.1| excinuclease ABC, B subunit [Clostridium sp. HGF2] gi|312953922|gb|EFR35603.1| excinuclease ABC, B subunit [Clostridium sp. HGF2] Length = 658 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/657 (53%), Positives = 459/657 (69%), Gaps = 3/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY P GDQP AI +L+ GI +K Q+LLG TG+GKTFT++ VI + +P +V Sbjct: 5 LFDLVSDYQPQGDQPKAIQELVDGIQKGKKQQVLLGATGTGKTFTISNVIAKVNKPTLVF 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R Sbjct: 65 AHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDMLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +A S+LER D I+++SV+CIYG + E Y +M +++GD +++KEL+ LV +QY R Sbjct: 125 MAAVNSILERRDTIIIASVACIYGASNPEQYREMFFSIRVGDIIDRKELMGKLVARQYTR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ ++RGTFRV GD IE+ P H + R+ MF ++IE I E PLTG+ + + Sbjct: 185 NDMDLLRGTFRVRGDVIEVAPGHTDSFILRIEMFDDEIERICEVDPLTGKVLNAYTVYVV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y S Y T + +N A I+EEL RL LE EG+LLE QRLEQR YD+E L G C Sbjct: 245 YPASGYATKQEIINRAANTIEEELADRLQVLENEGKLLEKQRLEQRARYDIEALREFGVC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD RK TL Sbjct: 305 PGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLVN 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ + I VSATPG++ELEQ +G I+EQIIRPTGL+DP V Sbjct: 365 YGFRLPSALDNRPMRFEEFEKMINQAIFVSATPGNYELEQTKGEIIEQIIRPTGLLDPVV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ DEI ++ R L+T LT RMAEDLT YL + +V ++H EVKT+ Sbjct: 425 TVRPTQGQIDDLVDEIRTRIEKNERTLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKTI 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLR GK+DVL+GINLLREGLDIPE L+ ILDADKEGFLRS+ SLIQ IGRAA Sbjct: 485 ERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLITILDADKEGFLRSERSLIQIIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + +VI+YAD IT S+Q A+DET RRRE Q+ +N+KH I P+++ + I EV+ + Sbjct: 545 RNAHGQVIMYADKITDSMQKALDETARRREIQIAYNEKHGITPKTIIKPIHEVVRSKETQ 604 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + I A+ K+K L +L K+M AA L+FE AA +RD + L++S Sbjct: 605 EMTAKYIGKKAKVSKKDKEK---LLANLEKEMREAAKVLDFERAAELRDILLELRNS 658 >gi|306835986|ref|ZP_07468978.1| excision endonuclease subunit UvrB [Corynebacterium accolens ATCC 49726] gi|304568152|gb|EFM43725.1| excision endonuclease subunit UvrB [Corynebacterium accolens ATCC 49726] Length = 697 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/660 (53%), Positives = 474/660 (71%), Gaps = 7/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQPAAI +L + ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FQVVSDYEPAGDQPAAIEELNERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT LL R D +VVSSVSCIYG+G+ +SY V + + + +++ L LV QY+R Sbjct: 148 SATSGLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIIAVDEELDRDRFLRLLVDIQYERN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+G RGTFRV GD+++I P++ E+ A R+ FG+DI+ + +P+TG I V+ ++I+ Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEQVDEVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IKEEL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMEKAVADIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GMY GD RK L E+ Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMYEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ +SATPG +E+ G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDFEMTSSGGEFVEQVIRPTGLVDPKVT 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ DE+ R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+ Sbjct: 447 VKPTKGQIDDLIDEVRGRIAVKERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 NV+ +VI+YAD IT S+Q AIDET RRREKQ+ +NK+H ++PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKITDSMQEAIDETERRREKQIAYNKEHGVDPQPLRKKIADILDQVYENN 626 Query: 738 LEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+AA ++ S ++ S++ + +A + L+ QM AA L FE A R+RDEI LK Sbjct: 627 GEEAAESDPSAVVEKRDVSSMATDEVEALINDLQAQMGAAARELKFELAGRLRDEIADLK 686 >gi|289750178|ref|ZP_06509556.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis T92] gi|289690765|gb|EFD58194.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis T92] Length = 758 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 67 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 126 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 127 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 186 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 187 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 246 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 247 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 305 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 306 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 365 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 366 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 425 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 426 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 485 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 486 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 545 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 546 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 605 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 606 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 665 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L QM Sbjct: 666 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 725 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 726 AARDLQFELAARFRDEIADLKRE--LRGMD 753 >gi|228930166|ref|ZP_04093175.1| UvrABC system protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829451|gb|EEM75079.1| UvrABC system protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 658 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|229551769|ref|ZP_04440494.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1] gi|258507918|ref|YP_003170669.1| excinuclease ABC subunit B [Lactobacillus rhamnosus GG] gi|258539167|ref|YP_003173666.1| excinuclease ABC subunit B [Lactobacillus rhamnosus Lc 705] gi|229314900|gb|EEN80873.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1] gi|257147845|emb|CAR86818.1| Excinuclease ABC, subunit B [Lactobacillus rhamnosus GG] gi|257150843|emb|CAR89815.1| Excinuclease ABC, subunit B [Lactobacillus rhamnosus Lc 705] gi|259649245|dbj|BAI41407.1| excinuclease ABC subunit B [Lactobacillus rhamnosus GG] Length = 671 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L KG +K Q+LLG TG+GKTFTM+ +I + +P ++++ Sbjct: 10 FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVS I+G+G Y ++ L+ G ++++ LL LV Q+ R Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ +D A RV FG++I+ I+E LTG+ I + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D + VDESHVT+PQ+ GMY GD RK L Y Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ +E+ + VSATPG +EL + + I EQIIRPTGL+DP + Sbjct: 370 GFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTL Sbjct: 430 EVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +IIRDLRLGKFDVL+GINLLREG+D+PE L+AILDADKEGFLR++ SLIQTIGRA+ Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + KVI+YAD +T S++ AIDET RRR Q + N++H+I P+++ + I I Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQS 609 Query: 740 -----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 DA T +D + +S + K K + +LR QM AA L+FE+AA +RD I L+ Sbjct: 610 DDEKADAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|326773410|ref|ZP_08232693.1| excinuclease ABC subunit B [Actinomyces viscosus C505] gi|326636640|gb|EGE37543.1| excinuclease ABC subunit B [Actinomyces viscosus C505] Length = 698 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/677 (52%), Positives = 481/677 (71%), Gaps = 25/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + + + EK +LLG TG+GK+ T A ++E +QRP +++ Sbjct: 14 FEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y + L++G +++ +LL V QY R Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDLLRRFVSMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++IE ++ +P+TG I VE + ++ Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTVEQVFVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+ EL RL +LE +GRLLEAQRL R TYDLEML+ G C Sbjct: 253 PASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G PP TL +Y PED LL +DESHVT+PQI M+ GD RK TL E+ Sbjct: 313 GIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ T+ +SATPG +E ++ G+ VEQIIRPTGLVDP V Sbjct: 373 GFRLPSALDNRPLTFAEFEDRIGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +E+ ++ RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL Sbjct: 432 VKPTQGQIDDLLEEVRARVERQERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SL+QTIGRAAR Sbjct: 492 RVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLVQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT ++ AI+ET RRR KQL +N +H I+PQ +++KI +V D + ED Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNAEHGIDPQPLRKKIADVTDMLARED 611 Query: 741 AATTNI-----------SIDAQQLSLS------KKKGKAH------LKSLRKQMHLAADN 777 T ++ S+ A++ + K G A + L +QMH AA++ Sbjct: 612 VDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLAELINELTQQMHAAAED 671 Query: 778 LNFEEAARIRDEIKRLK 794 L+FE AAR+RDEI+ LK Sbjct: 672 LHFELAARLRDEIQDLK 688 >gi|229105768|ref|ZP_04236397.1| UvrABC system protein B [Bacillus cereus Rock3-28] gi|229118657|ref|ZP_04248009.1| UvrABC system protein B [Bacillus cereus Rock1-3] gi|228664849|gb|EEL20339.1| UvrABC system protein B [Bacillus cereus Rock1-3] gi|228677657|gb|EEL31905.1| UvrABC system protein B [Bacillus cereus Rock3-28] Length = 658 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++G++S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGLNSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|226314863|ref|YP_002774759.1| excinuclease ABC subunit B [Brevibacillus brevis NBRC 100599] gi|226097813|dbj|BAH46255.1| excinuclease ABC subunit B [Brevibacillus brevis NBRC 100599] Length = 658 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/656 (53%), Positives = 471/656 (71%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AIA+L+ G+ + ++ Q LLG TG+GKT+T A+VI + RP +VMA Sbjct: 4 FELVSEFQPSGDQPTAIAELVAGLQAGKRHQTLLGATGTGKTYTAAQVIAQVNRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P++DT+IEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQSDTFIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS E Y ++++ L++G + E+L LV QY R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGSPEEYRELLLSLRVGMETGRDEILHRLVDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ + A RV FG++IE I+ LTG+ + + I I+ Sbjct: 184 DINFTRGTFRVRGDVVEIFPASESEQAIRVEFFGDEIERITSIDVLTGEILGQRDHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A++ I+ EL+ RL E G+LLEAQRLEQR YD+EM+ G C Sbjct: 244 PKSHYVTREEKMKLAVQSIEAELEERLKEFRDAGKLLEAQRLEQRTRYDIEMMMEMGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG G P TL +Y PED ++ +DESH+T+PQ+ GMY GD RK L E+ Sbjct: 304 GIENYSRHLTGLPAGHAPYTLLDYFPEDFIVMMDESHMTLPQVRGMYNGDRARKDVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I +SATPG +ELE +V+Q+IRPTGL+DP + Sbjct: 364 GFRLPSARDNRPLKFEEFEAKLKQAIYISATPGLYELEHSPE-MVQQVIRPTGLIDPTIT 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTK+M+EDLT+YL E I+VRY+HS++KT+E Sbjct: 423 VRPIKGQIDDLIGEIQATIAKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSDIKTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N +VI+YAD +T S+ AI ET RRR Q+ +N++H I PQ+VK+ + +VI+ + E Sbjct: 543 NAEGRVIMYADKMTDSMASAIRETERRRSIQMAYNEEHGITPQTVKKSVRDVIEATKVAE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A D ++ + KK A ++ + ++M AA NL FE AA +RD I LK+ Sbjct: 603 EKADYLPHADFKK--MPKKDRVAVIERMEEEMKEAARNLMFERAAELRDLILELKA 656 >gi|296327642|ref|ZP_06870185.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155232|gb|EFG96006.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 669 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/659 (52%), Positives = 478/659 (72%), Gaps = 16/659 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ +DY P+GDQP AI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP+++ Sbjct: 10 NLFKIHSDYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 69 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 70 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 129 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ L+ +Y Sbjct: 130 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 189 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 190 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 248 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + ++ IK++LK+ + + E + +LLEAQRL QR YDLEM+ G Sbjct: 249 VIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITEIG 308 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD RK +L Sbjct: 309 YCKGIENYSRYLSGKKPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKESL 368 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 369 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 428 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 429 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 488 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 489 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 548 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N H+I+P+S+ ++I Sbjct: 549 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYHHIDPKSIVKEIA------- 601 Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790 ED + I+ ++ +KK + KA ++ L K++ + L+FE+A +RDE+ Sbjct: 602 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 659 >gi|291527384|emb|CBK92970.1| excinuclease ABC, B subunit [Eubacterium rectale M104/1] Length = 660 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI A+ +P ++++ Sbjct: 3 FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R Sbjct: 63 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G ++ +L SL+ QY R Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARSLIDLQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++IFP++ +D A RV FG++I+ I E LTG+ ++E I+ Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + +N A I++EL R+ + E +L+EAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD RK TL +Y Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++L+T LTKRMAEDLT Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I I + Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI-AISKKV 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 AA N ++D S+SKK+ + H+ + K+M AA LNFE AA RD++ LK++ Sbjct: 601 AADEN-ALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNT 655 >gi|325684482|gb|EGD26646.1| excision endonuclease subunit UvrB [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 680 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI QL G + +K Q+L G TG+GKT+TMA VI M +P +V+ Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ RND IVV+SVSCIYG+G Y+ ++ + G E+ L+ LV QY R Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLIRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ D A+R+ FG++I+ I E PLTG+ ++I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ IK E+ ++ + EKEG+LLEA+R++QR TYDLEML G Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R GEPP TL ++ P+DSL+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL Q IVEQ+IRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSR-IVEQVIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ LIQT+GRAAR Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S++LAIDET RRR Q+++N++H I P+++ + + ++I + + Sbjct: 549 NANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + S D L+ K+ K + +L++QM AA L+FE AA +RD I L+ S Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665 >gi|325068718|ref|ZP_08127391.1| excinuclease ABC subunit B [Actinomyces oris K20] Length = 698 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/677 (52%), Positives = 481/677 (71%), Gaps = 25/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + + + EK +LLG TG+GK+ T A ++E +QRP +++ Sbjct: 14 FEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y + L++G +++ +LL V QY R Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDLLRRFVTMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++IE ++ +P+TG I VE + ++ Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTVEQVFVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+ EL RL +LE +GRLLEAQRL R TYDLEML+ G C Sbjct: 253 PASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G PP TL +Y PED LL +DESHVT+PQI M+ GD RK TL E+ Sbjct: 313 GIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ T+ +SATPG +E ++ G+ VEQIIRPTGLVDP V Sbjct: 373 GFRLPSALDNRPLTFAEFEDRVGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +E+ ++ RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL Sbjct: 432 VKPTQGQIDDLLEEVRTRVERQERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SL+QTIGRAAR Sbjct: 492 RVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLVQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT ++ AI+ET RRR KQL +N +H I+PQ +++KI +V D + ED Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNAEHGIDPQPLRKKIADVTDMLARED 611 Query: 741 AATTNI-----------SIDAQQLSLS------KKKGKAH------LKSLRKQMHLAADN 777 T ++ S+ A++ + K G A + L +QMH AA++ Sbjct: 612 VDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLAELINELTQQMHAAAED 671 Query: 778 LNFEEAARIRDEIKRLK 794 L+FE AAR+RDEI+ LK Sbjct: 672 LHFELAARLRDEIQDLK 688 >gi|119717061|ref|YP_924026.1| excinuclease ABC subunit B [Nocardioides sp. JS614] gi|119537722|gb|ABL82339.1| Excinuclease ABC subunit B [Nocardioides sp. JS614] Length = 706 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/692 (51%), Positives = 479/692 (69%), Gaps = 29/692 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ +DY PSGDQPAAI ++ + + + + +LLG TG+GKT T+A V E Sbjct: 4 VTDLERRVAPFKVVSDYQPSGDQPAAIKEITQRLRAGVQDVVLLGATGTGKTATVAWVAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK LAAQ +E + FP NA+EYFVSYYDYYQPEAYVP+TDTYIEK+SS Sbjct: 64 QVQRPMLVMQPNKTLAAQFANELRQLFPDNAIEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVVS+VSCIYG+G+ + Y +V+LK+G+ ++ +L Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMVRLKVGEEHDRDSILR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV+ QY R D+ RGTFRV GD++EIFP + E++A R+ FG++IE + +P+TG+ Sbjct: 184 RLVEIQYTRNDMTFTRGTFRVRGDTLEIFPVY-EEMAIRIEFFGDEIERMMTLHPVTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + E + I+ +HYV + A++ I+ EL+ +L E++G+LLEAQRL R TYD+ Sbjct: 243 VTEDEELYIFPATHYVAGPERMERAIRGIELELEDQLATFERQGKLLEAQRLRMRTTYDV 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS ++ GR G P L +Y PED +L +DESHV +PQI GMY GD Sbjct: 303 EMMRQVGSCSGIENYSMHIDGRTRGSAPNCLLDYFPEDFVLVIDESHVAVPQIGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L ++GFRLPS MDNRPLR+EE+ TI +SATPG +EL++ G VEQIIR Sbjct: 363 MSRKRNLVDHGFRLPSAMDNRPLRWEEFLDRIGQTIYLSATPGDYELDKVGGDTVEQIIR 422 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ + Q++D+ EINL ++ R+L+T LTK+M+EDLT+YL + +R R Sbjct: 423 PTGLVDPEVVVKPTKGQIDDLIHEINLRVEKNERVLVTTLTKKMSEDLTDYLLDAGVRTR 482 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL+RIE++RDLRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS S Sbjct: 483 YLHSEVDTLKRIELLRDLRLGQYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKS 542 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N H I+P +++KI Sbjct: 543 LIQTIGRAARNVSGQVHMYADRITPSMEAAIDETNRRRAKQVAYNTAHGIDPTPLRKKIA 602 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKK-----------GKAH---------------- 763 ++ D + E+ +T + Q L +K G+A Sbjct: 603 DITDMLAREEESTQELLDTWQHLDPKHRKAPVPGLSRIAGGEAGQHTADLAGLPSAELAQ 662 Query: 764 -LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L QM AA L+FE AAR+RDEI LK Sbjct: 663 LIQELTDQMKGAAAELHFEVAARLRDEIGDLK 694 >gi|225848324|ref|YP_002728487.1| excinuclease ABC subunit B [Sulfurihydrogenibium azorense Az-Fu1] gi|225643245|gb|ACN98295.1| excinuclease ABC subunit B [Sulfurihydrogenibium azorense Az-Fu1] Length = 662 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/656 (51%), Positives = 470/656 (71%), Gaps = 3/656 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F+++ + P+GDQP AI QL + + S Q+LLG TG+GKTFT+A +IE RP ++ Sbjct: 4 SIFKLKAPFEPTGDQPKAIKQLYENLKSGINEQVLLGATGTGKTFTIANLIEKYGRPTLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 ++ NK LAAQLY E K FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+ Sbjct: 64 LSHNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDSIDRL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G ++++ LL LV+ QY+ Sbjct: 124 RHSATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQ 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D + RGTF+V GD++EI P++ EDV R+ FG++IE I+E R +E Sbjct: 184 RDDFSLKRGTFKVKGDTVEILPAYTEDVIIRIEFFGDEIENITEIDIFNRDVKRKLERTV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ SHYV PRP + A+K I+++L++ + E K+G+ +EA RL QR YD+EM+ G+ Sbjct: 244 IFPASHYVIPRPDMIEAIKQIQKDLEIEVEEFRKQGKEIEANRLWQRTNYDIEMMLELGT 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSRY GR PGEPP TL +Y PED LL +DESHVTIPQI MY GD RK L Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIIDESHVTIPQIKAMYNGDLARKENLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YG+R+ S DNRPL+FEE+ I VSATP WE+E+ +G+IVEQIIRPTGL+DP Sbjct: 364 KYGWRMKSAYDNRPLKFEEFVSKIQKAIYVSATPAQWEIERSKGVIVEQIIRPTGLLDPV 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E++ Q++D+ +EI ++ R L+ LTK+MAE+L +YL ER+I+ Y+HSE+ T Sbjct: 424 IEVKKTEGQIDDLINEIWKVKERNERALVITLTKKMAENLADYLQERDIKAVYLHSEIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER +II++ R GK+DV+VG+NLLREGLD+PE LVA+LDADK+GFLRSKT+LIQTIGRA Sbjct: 484 IERAKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAVLDADKQGFLRSKTALIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N K ILYAD +T ++ I+ET RRR+ Q E+N+KH I P++VK+ E+ D I L Sbjct: 544 ARNENGKAILYADKLTPAMVETIEETNRRRKLQQEYNEKHGITPKTVKK---EIKDLISL 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+ + + + +++ ++ L KQM A N FE+AA++RD++++LK Sbjct: 601 EELGILELYQEIPEDISTEEDLLKEIEKLEKQMWEYAKNWEFEKAAQVRDKLEKLK 656 >gi|255533917|ref|YP_003094289.1| excinuclease ABC subunit B [Pedobacter heparinus DSM 2366] gi|255346901|gb|ACU06227.1| excinuclease ABC, B subunit [Pedobacter heparinus DSM 2366] Length = 679 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/667 (52%), Positives = 482/667 (72%), Gaps = 20/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQPAAI QL++G+++ + Q LLGVTGSGKTFT+A VI+ Q+P ++++ Sbjct: 3 FQIVSDYKPTGDQPAAIKQLVEGVNNEDHYQTLLGVTGSGKTFTIANVIQQTQKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++ ++TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFIASSNTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T +L+ R D IVVSS+SCIYG+G+ E +S+ + + +G + + L SLV+ Y R Sbjct: 123 RTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFSVGLRISRNSFLHSLVEILYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++IFP++L D A+RVS FG+DIE +S P+TG+ + +E + I Sbjct: 183 TTTDFKRGTFRVKGDTVDIFPAYL-DNAYRVSFFGDDIEALSVIDPVTGKTLEKLEDMAI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VTP+ N+++ I+EEL++R +L + LLEA+RLE+R+ +D+EM++ G C Sbjct: 242 YPANLFVTPKERFNSSIWGIQEELEIRKNQLIGDRHLLEAKRLEERVNFDIEMMKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PG P L +Y P+D L+ +DESHVT+PQI MY GD RK +L E Sbjct: 302 SGIENYSRFFDGRAPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKMSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ L P TI VSATP +EL++ +GI++EQ+IRPTGL+DP + Sbjct: 362 YGFRLPSALDNRPLNFDEFERLAPQTIYVSATPADYELQKSEGIVIEQVIRPTGLLDPLI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R A QV+D+ DEI+ + G R+L+T LTKRMAE+LT+Y+ NI+ RY+HSEVKTL Sbjct: 422 DVRPAVNQVDDLLDEIDKTIKLGDRVLVTTLTKRMAEELTKYMDRLNIKCRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS +LIQTIGRAA Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733 RN +VI+YAD +T S++ I+ET RRREKQ+ +N +H I P++V +E IME V+ Sbjct: 542 RNDRGRVIMYADNMTDSMERTIEETNRRREKQVAYNLEHGIVPKTVGKSREAIMEQSSVL 601 Query: 734 D----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 D P + D + I+ D ++K + + + RK+M AA +++F A Sbjct: 602 DFSSGERKRAKPYVEVDEVS--IAADPVVQYMTKPEMQKSIDKTRKEMAKAAKDMDFLLA 659 Query: 784 ARIRDEI 790 AR+RDE+ Sbjct: 660 ARLRDEM 666 >gi|116490460|ref|YP_810004.1| excinuclease ABC subunit B [Oenococcus oeni PSU-1] gi|116091185|gb|ABJ56339.1| Excinuclease ABC subunit B [Oenococcus oeni PSU-1] Length = 673 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/665 (52%), Positives = 471/665 (70%), Gaps = 17/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL++G++ K Q+LLG TG+GKTFT++ VI ++ +P ++++ Sbjct: 11 FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+ Sbjct: 71 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL RND IVV+SVS I+G+G Y ++ L+ GD + L+ L+ QY R Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A RV FG++I+ I E PLTG+ + + I I+ Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T L +A I++E++ + + E++G+LLEAQRL+QR YD+EML G Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD RK TL +Y Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +EL + I EQIIRPTGL+DP + Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R R Q++D+ EIN A + R+ +T LTKRM+EDLT YL E ++V+Y+HS++KTL Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER E+IR+LRLGKFD LVGINLLREGLD+PE LVAILDADK+GFLR++ SLIQTIGRAA Sbjct: 491 ERTEVIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD +T+++Q AIDET RRR Q+++N++HNI P ++K++I I Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSI------ 604 Query: 740 DAATTNI-SIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A + + S D +L L+K K K + +L +QM AA ++FEEAA++RD I Sbjct: 605 -AISHEVQSADESKLDLTKVAFADMPIKDQKEMVGNLTEQMKSAAKRMDFEEAAQLRDSI 663 Query: 791 KRLKS 795 LK+ Sbjct: 664 LELKT 668 >gi|302533819|ref|ZP_07286161.1| excinuclease ABC, B subunit [Streptomyces sp. C] gi|302442714|gb|EFL14530.1| excinuclease ABC, B subunit [Streptomyces sp. C] Length = 716 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/703 (51%), Positives = 479/703 (68%), Gaps = 41/703 (5%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQPAAIA+L K I + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y +V LK+G+ +++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I + ++ SHYV + A+ I+ EL RL ELEK+G++LEAQRL R TYDL Sbjct: 243 ISEDRELYVFPASHYVAGPERMEKAITGIEAELAERLAELEKQGKMLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS ++ R G P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMMRQIGSCSGIENYSLHMDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFLERVGQTVYLSATPGKYELSRSDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRGRVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 482 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T +++ AI+ET RRREKQ+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKMTPAMEKAIEETNRRREKQIAYNTANGIDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAH--------------------------- 763 +++ I E+ T + + + K GKA Sbjct: 602 DIVATIAREELDTEELLGTGYRQAKDGKAGKAPVPALGGKAAAAAKGKGGKTAKAAAAAA 661 Query: 764 ------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++M AA L FE AARIRDE+ LK Sbjct: 662 PTDRPAAELAALIEQMTERMRGAAAELQFEVAARIRDEVGELK 704 >gi|227535570|ref|ZP_03965619.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186817|gb|EEI66884.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 673 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L KG +K Q+LLG TG+GKTFTM+ +I + +P ++++ Sbjct: 12 FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 72 HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVS I+G+G Y ++ L+ G ++++ LL LV Q+ R Sbjct: 132 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ +D A RV FG++I+ I+E LTG+ I + + I+ Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EL+ +L L E +LLEAQRLEQR YD+EM+ G Sbjct: 252 PATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMGFTS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D + VDESHVT+PQI GMY GD RK L Y Sbjct: 312 GIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQMLVNY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ + VSATPG +EL++ + I EQIIRPTGL+DP + Sbjct: 372 GFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLDPKI 431 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTL Sbjct: 432 EVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 491 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +IIRDLRLGKFDVL+GINLLREG+D+PE L+AILDADKEGFLR++ SLIQTIGRA+ Sbjct: 492 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 551 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + KVI+YAD +T S++ AIDET RRR Q + N++H+I P+++ + I I Sbjct: 552 RNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRAAISSYEQS 611 Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D A T +D + +S + K K + +LR QM AA L+FE+AA +RD I L+ Sbjct: 612 DDDKAEAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 669 Query: 795 S 795 + Sbjct: 670 A 670 >gi|229099594|ref|ZP_04230522.1| UvrABC system protein B [Bacillus cereus Rock3-29] gi|228683890|gb|EEL37840.1| UvrABC system protein B [Bacillus cereus Rock3-29] Length = 658 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/655 (53%), Positives = 478/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++G+ S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGLDSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|257865936|ref|ZP_05645589.1| excinuclease ABC [Enterococcus casseliflavus EC30] gi|257872269|ref|ZP_05651922.1| excinuclease ABC [Enterococcus casseliflavus EC10] gi|257799870|gb|EEV28922.1| excinuclease ABC [Enterococcus casseliflavus EC30] gi|257806433|gb|EEV35255.1| excinuclease ABC [Enterococcus casseliflavus EC10] Length = 665 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/656 (52%), Positives = 468/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL+ G+ +K Q+LLG TG+GKT+T++ +I+ + +P +++A Sbjct: 12 FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 72 HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCI+G+GS Y++ +V L++G + +LL L++ Q++R Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I E LTG+ + + E + I+ Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT + A+ I+ EL RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESHVT+PQ+ GMY GD RK L +Y Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQVRGMYNGDRARKQMLVDY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + VSATPG +E +Q +I +QIIRPTGL+DP +E Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQTDTVI-QQIIRPTGLLDPVIE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+M+EDLT+Y E I+V+Y+HS++KTLE Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD +T S+Q AIDET RRR Q +N++H I P+++ ++I ++I + + Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLI--AITKV 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T LS+++ L K+M AA L+FE AA +RD I LK++ Sbjct: 609 AEETGEYTTTSYEELSREEKATLLLKFEKEMKDAAKALDFETAATLRDTILELKAA 664 >gi|210621604|ref|ZP_03292717.1| hypothetical protein CLOHIR_00662 [Clostridium hiranonis DSM 13275] gi|210154669|gb|EEA85675.1| hypothetical protein CLOHIR_00662 [Clostridium hiranonis DSM 13275] Length = 660 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/657 (53%), Positives = 468/657 (71%), Gaps = 11/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI + I EK LLGVTGSGKTFTMA +IE + +P +++A Sbjct: 4 FKIHSKFKPTGDQPEAIKTISDAIKRNEKFSTLLGVTGSGKTFTMANIIENVNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVASSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D I++SSVSCIYG+G + Y +M++ L+ GD ++ +++ L++ QY+R Sbjct: 124 SATAALLERRDVIIISSVSCIYGLGDPKDYKEMMLSLRPGDEKDRDDVIKRLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ A RV FG++I+ I+E +TG+ + + I+ Sbjct: 184 DINFTRGTFRVRGDVLEIFPAGDDEKAIRVEFFGDEIDRITEIDYITGKIVGTRSHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A+K I+ EL+ R+ ++ LLEAQR+EQR YD+EML+ G CQ Sbjct: 244 PASHYVTTPERIEEAIKRIEAELEERIQYFKERDMLLEAQRIEQRTNYDIEMLKEIGFCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR GE P TL ++ PED L+ VDESHVTIPQ+ GMY GD RK +L + Sbjct: 304 GIENYSRHLTGRGEGEKPYTLMDFFPEDFLMIVDESHVTIPQVRGMYAGDRSRKGSLIDN 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + +ATPG +E+ Q EQIIRPTGL+DP ++ Sbjct: 364 GFRLPSAYDNRPLNFEEFEENINQIVFTTATPGPYEI-QHSTTFAEQIIRPTGLLDPEID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ EI ++G R+L+T LTK+M+EDLT+YL E I+V+Y+HS++ TLE Sbjct: 423 VRPIENQIDNLVHEIYSVIEKGERVLVTTLTKKMSEDLTDYLKEIGIKVKYLHSDIATLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLR+GKFDVL+GINLLREGLDIPE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTEIIRDLRMGKFDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N + +VI+YAD IT S++ AIDET RRRE Q +NK+H I P++VK+ I I+ E Sbjct: 543 NEHGRVIMYADKITDSMRNAIDETKRRREIQDAYNKEHGIIPKTVKKDIRAAIEATQAAE 602 Query: 740 DAATTNI--SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + I + D +L KA++ L ++M AA NL FE AA +RD++K L+ Sbjct: 603 EEVVYGIKETDDIDEL-------KANVAKLTEEMMEAAKNLQFERAAELRDKLKELE 652 >gi|116494463|ref|YP_806197.1| excinuclease ABC subunit B [Lactobacillus casei ATCC 334] gi|191637848|ref|YP_001987014.1| excinuclease ABC subunit B [Lactobacillus casei BL23] gi|301065973|ref|YP_003787996.1| helicase subunit of the DNA excision repair complex [Lactobacillus casei str. Zhang] gi|122264111|sp|Q03AL7|UVRB_LACC3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238693024|sp|B3WCQ5|UVRB_LACCB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116104613|gb|ABJ69755.1| Excinuclease ABC subunit B [Lactobacillus casei ATCC 334] gi|190712150|emb|CAQ66156.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Lactobacillus casei BL23] gi|300438380|gb|ADK18146.1| Helicase subunit of the DNA excision repair complex [Lactobacillus casei str. Zhang] gi|327381915|gb|AEA53391.1| Excinuclease ABC subunit B [Lactobacillus casei LC2W] gi|327385076|gb|AEA56550.1| Excinuclease ABC subunit B [Lactobacillus casei BD-II] Length = 671 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L KG +K Q+LLG TG+GKTFTM+ +I + +P ++++ Sbjct: 10 FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVS I+G+G Y ++ L+ G ++++ LL LV Q+ R Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ +D A RV FG++I+ I+E LTG+ I + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EL+ +L L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMGFTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D + VDESHVT+PQI GMY GD RK L Y Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQMLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ + VSATPG +EL++ + I EQIIRPTGL+DP + Sbjct: 370 GFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLDPKI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTL Sbjct: 430 EVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +IIRDLRLGKFDVL+GINLLREG+D+PE L+AILDADKEGFLR++ SLIQTIGRA+ Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + KVI+YAD +T S++ AIDET RRR Q + N++H+I P+++ + I I Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRAAISSYEQS 609 Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D A T +D + +S + K K + +LR QM AA L+FE+AA +RD I L+ Sbjct: 610 DDDKAEAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|199597263|ref|ZP_03210694.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001] gi|199591779|gb|EDY99854.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001] Length = 671 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L KG +K Q+LLG TG+GKTFTM+ +I + +P ++++ Sbjct: 10 FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVS I+G+G Y ++ L+ G ++++ LL LV Q+ R Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ +D A RV FG++I+ I+E LTG+ I + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I EL+ RL L E +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D + VDESHVT+PQ+ GMY GD RK L Y Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ +E+ + VSATPG +EL + + I EQIIRPTGL+DP + Sbjct: 370 GFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ E+N R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTL Sbjct: 430 EVRPVMGQIDDLVGEVNKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +IIRDLRLGKFDVL+GINLLREG+D+PE L+AILDADKEGFLR++ SLIQTIGRA+ Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + KVI+YAD +T S++ AIDET RRR Q + N++H+I P+++ + I I Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQS 609 Query: 740 -----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 DA T +D + +S + K K + +LR QM AA L+FE+AA +RD I L+ Sbjct: 610 DDEKADAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 667 Query: 795 S 795 + Sbjct: 668 A 668 >gi|27467459|ref|NP_764096.1| excinuclease ABC subunit B [Staphylococcus epidermidis ATCC 12228] gi|38258770|sp|Q8CPZ0|UVRB_STAES RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|27315002|gb|AAO04138.1|AE016745_237 exinuclease ABC subunit B [Staphylococcus epidermidis ATCC 12228] gi|329723253|gb|EGG59783.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU144] Length = 661 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/655 (53%), Positives = 471/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P GDQP AI +++ G++ R++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLKSEFEPQGDQPQAIQKIVDGVNERKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+++SVSCIYG+G+ E Y ++V +++G +E+ ELL LV QY R Sbjct: 127 SATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLIDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI + D Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++KK+ + ++++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659 >gi|241896136|ref|ZP_04783432.1| excision endonuclease subunit UvrB [Weissella paramesenteroides ATCC 33313] gi|241870650|gb|EER74401.1| excision endonuclease subunit UvrB [Weissella paramesenteroides ATCC 33313] Length = 671 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/667 (51%), Positives = 474/667 (71%), Gaps = 5/667 (0%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 IN H+ + +++ + Y P+GDQP AI +L+ G+ + K Q+LLG TG+GKTFT++ VI Sbjct: 2 INRHTDN--EYELVSKYQPTGDQPEAIRKLVNGLKNGIKEQILLGATGTGKTFTISNVIA 59 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +P +V++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS Sbjct: 60 QTNKPVLVLSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS 119 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN++ID++R+SAT SLL RND IVV+SVS I+G+G+ E Y ++ +++GD +E+ +L+ Sbjct: 120 INDEIDKLRNSATASLLARNDTIVVASVSSIFGLGNPEQYHDHVINVRVGDILERNDLMH 179 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L+ Q++R DI RG FRV GD +E+FP+ + A R+ FG++++ I E LTG+ Sbjct: 180 RLIDIQFQRNDIDFQRGRFRVRGDVLEVFPASSDAKALRIEFFGDEVDRIREIDSLTGEI 239 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 ++ I+ +H++T + A+K I+ EL +L +LEK+G+LLEAQRL+QR YD+ Sbjct: 240 TAELDLATIFPATHFMTNDAIRDRALKTIQAELDDQLQKLEKDGKLLEAQRLKQRTEYDI 299 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ G IENYSR++ GR PGEPP TL ++ P+D ++ VDESHVT+PQ+ GMY+GD Sbjct: 300 EMIREMGFTTGIENYSRHMDGRQPGEPPFTLLDFFPDDFIIIVDESHVTMPQVRGMYKGD 359 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQII 549 RK TL YGFRLPS +DNRPLR EE+ I +SATPG +E ++ + + +QII Sbjct: 360 RARKETLINYGFRLPSALDNRPLRIEEFEKHVNQIIYMSATPGDYENDRVPETDVAQQII 419 Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 RPTGL+DP +E+R Q++D+ EIN R+ +T LTK+MAEDLT+YL + I+V Sbjct: 420 RPTGLLDPEIEVRPVMGQIDDLIGEINKRVDNEERVFVTTLTKKMAEDLTDYLEDVGIKV 479 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 +Y+HS++KTLER EIIRDLRLGKFDVLVGINLLREG+D+PE L+AILDADKEGFLR+ Sbjct: 480 KYLHSDIKTLERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLIAILDADKEGFLRNTR 539 Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 SLIQTIGRAARN N VI+YAD++T S+Q A+DET+RRR Q+++N+ HNI P ++K+ I Sbjct: 540 SLIQTIGRAARNENGHVIMYADSVTASMQAAMDETSRRRHIQIQYNEDHNITPHTIKKAI 599 Query: 730 MEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 ++I D +T D +++ A + +L QM AA L+FE+AA +R Sbjct: 600 RDLISASHEVDNQSTEKGSFTDVAFKDMARDDQNAMIANLEDQMRSAAKRLDFEDAANLR 659 Query: 788 DEIKRLK 794 D + LK Sbjct: 660 DAVMELK 666 >gi|330686480|gb|EGG98074.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU121] Length = 661 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/655 (53%), Positives = 471/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +++KG+ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLNSEFDPQGDQPEAIKKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIQQVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +E+ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++++ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTNQLVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQDRIDKNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AIDET RRR+ Q+ HN+KH I PQ++ +KI +VI + D Sbjct: 546 NDRGEVIMYADKITDSMRYAIDETQRRRDIQMAHNEKHGITPQTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 N I+ + ++KK+ + ++++ K+M AA +L+FE+A +RD + LKS Sbjct: 606 DTNENKQIEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKS 659 >gi|226306795|ref|YP_002766755.1| UvrABC system protein B [Rhodococcus erythropolis PR4] gi|226185912|dbj|BAH34016.1| UvrABC system protein B [Rhodococcus erythropolis PR4] Length = 720 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/692 (52%), Positives = 480/692 (69%), Gaps = 33/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAIA+L K I+ EK +LLG TG+GK+ T A +IE +QRPA+VMA Sbjct: 28 FEVVSPYEPAGDQPAAIAELEKRINEGEKDVVLLGATGTGKSATTAWLIEKLQRPALVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY +QL +G V + L LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLDVGVEVPRDAFLRLLVDVQYNRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R V+T++I+ Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDIVRQVDTVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A K I+ EL+ RL ELE +G+LLEAQRL R YDLEM++ G C Sbjct: 267 PATHYVAGPERMERAAKDIEAELEERLAELEGKGKLLEAQRLRMRTQYDLEMIKQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI MY GD RK L E+ Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE++ T+ +SATPG +EL Q G VEQ+IRPTGL+DP V Sbjct: 387 GFRLPSATDNRPLTWEEFSKRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGLIDPEVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A++ R+L+T LTK+M+EDLT+YL E IRVRY+HS++ TL Sbjct: 447 VKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSDIDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AI+ET RRREKQ+ +N+K ++PQ +++KI +++D + E+ Sbjct: 567 NVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILDQV-YEE 625 Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771 A T S+D + +G+ +K L QM Sbjct: 626 AEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKELTDQM 685 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE A R+RDEI LK +G+D Sbjct: 686 MNAARDLQFELAGRLRDEISDLKKE--LRGMD 715 >gi|315641119|ref|ZP_07896198.1| excision endonuclease subunit UvrB [Enterococcus italicus DSM 15952] gi|315483127|gb|EFU73644.1| excision endonuclease subunit UvrB [Enterococcus italicus DSM 15952] Length = 664 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/655 (52%), Positives = 471/655 (71%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI QL++ I+ +K Q+LLG TG+GKT+T++ VI+ + +P +++A Sbjct: 10 FQLVSEYQPAGDQPEAIRQLVQHINDGKKEQILLGATGTGKTYTISNVIQQVNKPTLILA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND +VV+SVSCI+G+GS Y + +V ++ G + + E+L L+ Q++R Sbjct: 130 SATSSLLERNDVVVVASVSCIFGLGSPFEYQKQVVSIREGMEISRDEVLRRLIDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A R+ FG++++ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDERALRIEFFGDEVDRIREVDALTGEVYADTEHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ I+EEL +RL L + +LLEAQRLEQR YD+EM+ G Sbjct: 250 PATHFLTDGDHMEVAIAAIQEELALRLAVLRENNQLLEAQRLEQRTNYDIEMMREMGYTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ VDESHVT+PQI GMY GD RK L +Y Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVVDESHVTMPQIRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +E E ++V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLRIEEFEKHVHQIIYVSATPGPYEYEHTD-LVVQQIIRPTGLLDPLIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+M+EDLT+YLYE I+V+Y+HS++KTLE Sbjct: 429 VRPIMGQIDDLVGEINERVDRDERVFITTLTKKMSEDLTDYLYELGIKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 489 RTEIIRDLRLGKFDVLIGINLLREGLDVPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + KVI+YAD +T S+ AI+ET RRR Q +N++H I P ++K++I ++I + + Sbjct: 549 NSSGKVIMYADKMTDSMTRAIEETARRRGLQEAYNEEHGIVPVTIKKEIRDLIR--VSKV 606 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + A+ LSKK + + L +M A L+FE AA +RD I LK+ Sbjct: 607 AEDTPEPLLAKLSDLSKKDKRELIVKLEAEMREEAKALHFEAAATLRDTILELKA 661 >gi|229187375|ref|ZP_04314518.1| UvrABC system protein B [Bacillus cereus BGSC 6E1] gi|228596079|gb|EEK53756.1| UvrABC system protein B [Bacillus cereus BGSC 6E1] Length = 658 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPEIYEATPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|311031898|ref|ZP_07709988.1| excinuclease ABC subunit B [Bacillus sp. m3-13] Length = 659 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/658 (54%), Positives = 475/658 (72%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AIA++++G+ +K Q LLG TG+GKTFT++ VI+A+ +P +++A Sbjct: 4 FELVSGYKPDGDQPTAIAEIVEGLKKGKKHQTLLGATGTGKTFTVSNVIQAVNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ERND I+++SVSCIYG+GS E Y ++V L+ G E+ LL LV QY R Sbjct: 124 SATASLFERNDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEKERNVLLRDLVDIQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++I+ I E LTG+ + + + I+ Sbjct: 184 DIDFKRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILGDRNHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I+ EL+ RL EL + G+LLEAQRLEQR YDLEM+ G C Sbjct: 244 PASHFVTREEKMKKAIVNIQAELEERLEELREAGKLLEAQRLEQRTRYDLEMMAEMGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL ++ PED LL +DESHVT+PQI GM+ GD RK L ++ Sbjct: 304 GIENYSRHLTLRPAGSTPYTLMDFFPEDFLLVIDESHVTLPQIRGMFNGDQARKQVLVDH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ + VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSAKDNRPLRFEEFEKKTAQLVYVSATPGPYELEHTPK-MVEQIIRPTGLLDPIIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI+ ++ R+L+T LTK+M+EDLT YL E I+V Y+HSE+KTL+ Sbjct: 423 VRPIKGQIDDLIGEIHKRVEKDERVLVTTLTKKMSEDLTAYLKELGIKVAYLHSEIKTLD 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIR+LR+GK DVL+GINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RIEIIRELRMGKHDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD ITKS+ +A++ET RRRE Q +N +H I P ++K+K+ E+I + Sbjct: 543 NSNGKVIMYADKITKSMDIALNETKRRREIQEAYNLEHGITPTTIKKKVPELIRATFV-- 600 Query: 741 AATTNISIDAQQLSL---SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + D + SL +KK+ + ++S+ ++M AA L+FE AA +RD I LK+ Sbjct: 601 -AEEDGNYDGKAPSLRPKNKKEREKLIESMEQEMKDAAKALDFERAAELRDLILELKA 657 >gi|50954810|ref|YP_062098.1| excinuclease ABC subunit B [Leifsonia xyli subsp. xyli str. CTCB07] gi|71658761|sp|Q6AF52|UVRB_LEIXX RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|50951292|gb|AAT88993.1| excinuclease ABC subunit B [Leifsonia xyli subsp. xyli str. CTCB07] Length = 688 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/668 (51%), Positives = 474/668 (70%), Gaps = 16/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AIA+L I + E +LLG TG+GK+ T A ++EA+QRP +V+A Sbjct: 10 FEVVSEYQPSGDQPKAIAELAGRITAGETDVVLLGATGTGKSATTAWLVEAVQRPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN +++R+RH Sbjct: 70 HNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINAEVERLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL R D +VVS+VSCIYG+G+ E Y + +V L++G +V + +L+ V QY+R Sbjct: 130 STTNSLLSRRDVVVVSTVSCIYGLGAAEEYLEAMVALQVGQNVGRDQLIRRFVAMQYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD+IEI P + E+ A R+ +FG++IE + +PLTG+ + + + ++ Sbjct: 190 DIDFSRGKFRVRGDTIEIIPVY-EEHALRIELFGDEIEALYSLHPLTGEVLARTDAVSVF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY T+ A+ I+ EL RL+ELE+EG+LLEAQRL R +D+EM+E G C Sbjct: 249 PATHYAASPATIQRAIGTIQTELHDRLVELEREGKLLEAQRLRMRTQFDIEMMEQIGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P L +Y P+D L+ +DESHVT+PQI MY GD RK TL E+ Sbjct: 309 GIENYSRHIDGRAPGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMYEGDASRKRTLVEH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLR+ E+ T+ +SATPG +EL G +VEQIIRPTGLVDP + Sbjct: 369 GFRLPSAMDNRPLRWNEFKERVGQTVYLSATPGQYELGIADG-VVEQIIRPTGLVDPQIL 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +EI A++ R+L+T LTK+MAE+LT++L E ++VRY+H++V TL Sbjct: 428 VKPTKGQIDDLLEEIRARAERDERVLVTTLTKKMAEELTDFLAEAGVKVRYLHADVDTLR 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++ +LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 488 RVELLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T S++ AI+ET+RR E Q+E+N+ + I+PQ ++++I ++ D + E+ Sbjct: 548 NVSGEVHMYADVLTDSMKKAIEETSRRSELQVEYNRANGIDPQPLRKRIADITDILAREE 607 Query: 741 AATTNISIDAQQLSLS----------KKKGKAHLKS----LRKQMHLAADNLNFEEAARI 786 A T I Q S +G A L+S L QM AA L FE AAR+ Sbjct: 608 ADTAKILAGRDQKRKSPTPSLRSGGIAAQGAAELESLIADLNAQMLAAAGELKFELAARL 667 Query: 787 RDEIKRLK 794 RDE+ LK Sbjct: 668 RDELSDLK 675 >gi|126435595|ref|YP_001071286.1| excinuclease ABC subunit B [Mycobacterium sp. JLS] gi|126235395|gb|ABN98795.1| Excinuclease ABC subunit B [Mycobacterium sp. JLS] Length = 719 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/690 (51%), Positives = 482/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP ++MA Sbjct: 28 FEVVSPYQPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLLMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+LK+GD V + LL LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDALLRLLVDVQYARN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R V++++++ Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEYFGDEVEALYYMHPLTGDVVRRVDSLRVF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I++EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMAQAISSIEKELEERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFASRIGQTVYLSATPGPYEMSQSGGEFVEQVIRPTGLVDPQVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIGEIRKRTELDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N++ I+P+ +++KI +++D + E Sbjct: 567 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEERGIDPKPLRKKIADILDQVYREA 626 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T + + + S+ + G+A +K L +QM Sbjct: 627 DDTETVEVGGSGRNASRGRRAQGEPGRAVSAGIVEGRDTANMPRAELADLIKDLTEQMMT 686 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AARIRDEI+ LK +G+D Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714 >gi|220928838|ref|YP_002505747.1| excinuclease ABC subunit B [Clostridium cellulolyticum H10] gi|219999166|gb|ACL75767.1| excinuclease ABC, B subunit [Clostridium cellulolyticum H10] Length = 660 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/658 (54%), Positives = 479/658 (72%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AIA+L KGI +K Q LLGVTGSGKT+TMAKVIE +Q+P +V+A Sbjct: 7 FEVISEYKPMGDQPKAIAKLSKGILEGQKHQTLLGVTGSGKTYTMAKVIEQVQKPTLVIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH Sbjct: 67 HNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSINEEIDKLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G E Y+ +++ L++G ++ +++ LV QY+R Sbjct: 127 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDDVIKKLVDIQYERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I RG FRV GD +EIFP++ + RV FG++IE I+E LTG+ + + I ++ Sbjct: 187 EIDFRRGRFRVRGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIVGTRDHIAVF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T R ++ AM I++EL+ RL + + E +LLEAQRLEQR YDLEM+ G CQ Sbjct: 247 PASHYATSRHKMDRAMVTIEKELEERLEQFKMEDKLLEAQRLEQRTRYDLEMMSEIGFCQ 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++GR G P TL +Y P+D LL +DESHVT+ Q+ MY GD RK +L EY Sbjct: 307 GIENYSRHISGREAGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + VSATP ++E E IVEQIIRPTGL+DP + Sbjct: 367 GFRLPSAFDNRPLKFHEFEERVNQVVYVSATPANYEREHSTQ-IVEQIIRPTGLIDPEIT 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EIN+ A++ R+L+T LTK+MAEDLT+Y+ E +IRV+Y+HS+V T E Sbjct: 426 VKPVKGQIDDLIGEINMRAEKHQRVLVTTLTKKMAEDLTDYMKELDIRVKYLHSDVVTFE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 486 RMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N VI+YAD IT S+Q AI ET RRR+ Q+++N+KH I P ++++ + V++ + Sbjct: 546 NSEGMVIMYADNITGSMQRAISETNRRRQIQMDYNEKHGIVPTTIQKSVRNVLEATKVAE 605 Query: 739 -EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ED T + + +S+++ + + L+K+M AA +L FE AA +RD+I+ L+ Sbjct: 606 EEDKYYT----EKKATQMSEQELENLIAKLQKEMKQAAADLQFERAAELRDKIELLRG 659 >gi|88856202|ref|ZP_01130862.1| excinuclease ABC subunit B [marine actinobacterium PHSC20C1] gi|88814521|gb|EAR24383.1| excinuclease ABC subunit B [marine actinobacterium PHSC20C1] Length = 690 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/685 (50%), Positives = 484/685 (70%), Gaps = 36/685 (5%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 ++ + F++ ++Y PSGDQP AI QL + I++ E +LLG TG+GK+ T A +IE +QR Sbjct: 4 TRSVRPFEVISEYTPSGDQPEAIRQLAQRINAGETDVVLLGATGTGKSATTAWLIEQVQR 63 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P ++M+ NK LAAQL +EF++ P+NAVEYFVSYYDYYQPEAY+P+TDT+IEK+SS+N + Sbjct: 64 PTLIMSHNKTLAAQLANEFRDLMPNNAVEYFVSYYDYYQPEAYIPQTDTFIEKDSSVNAE 123 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 ++R+RHS T SLL R D +VVS+VS IYG+G+ ESY + ++ L++G ++++ L+ V Sbjct: 124 VERLRHSTTNSLLSRRDTVVVSTVSSIYGLGAAESYLEAMIALQVGMRIDRETLIRKFVG 183 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY+R D RG FRV GD+IEI P + E++A R+ MFG++IE + +PLTG+ I+ + Sbjct: 184 MQYQRNDYDFSRGNFRVRGDTIEIIPVY-EELAIRIEMFGDEIEALYSLHPLTGEIIKQM 242 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + + ++ +HY T+ A+ I+EEL RL LE++G+LLEAQRL R T+D+EM+E Sbjct: 243 DAVSVFPGTHYSASPDTIKRAIVSIQEELADRLGVLERQGKLLEAQRLRMRTTFDIEMME 302 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYS ++ GR PGEPP L +Y PED L+ +DESHVT+PQI MY GD RK Sbjct: 303 QIGFCNGIENYSLHMDGRQPGEPPSCLLDYFPEDFLVVIDESHVTVPQIGAMYEGDASRK 362 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI---IVEQIIRP 551 TL E+GFRLPS +DNRPL++EE+ I +SATPG +EL GI IVEQ+IRP Sbjct: 363 RTLVEHGFRLPSALDNRPLKWEEFLERAGQKIYLSATPGRYEL----GITDSIVEQVIRP 418 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP + ++ ++ Q++D+ ++I L ++ RIL+T LTK+MAE+LTE+L E +RVRY Sbjct: 419 TGLIDPHIVVKPSKGQIDDLLEQIRLRVEKNERILVTTLTKKMAEELTEFLSEHGVRVRY 478 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS+V TL R+E++ +LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSL Sbjct: 479 LHSDVDTLRRVELLTELRQGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSL 538 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAARNV+ +V +YAD +T+S+Q AIDET RRREKQ+ +N +H I+PQ +++KI + Sbjct: 539 IQTIGRAARNVSGEVHMYADVVTRSMQFAIDETDRRREKQVAYNTEHGIDPQPLRKKIAD 598 Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAH----------------------LKSLRK 769 + D +L E A T A+ L+ + GK + L + Sbjct: 599 ITDALLREGADT------AELLATRNRDGKKRTPTPRLSREGIAASGGNDLEQIIADLNE 652 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QM AA L FE AAR+RDE++ LK Sbjct: 653 QMLQAASELKFELAARLRDEVQDLK 677 >gi|291525875|emb|CBK91462.1| excinuclease ABC, B subunit [Eubacterium rectale DSM 17629] Length = 660 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI A+ +P ++++ Sbjct: 3 FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R Sbjct: 63 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G ++ +L +L+ QY R Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARALIDLQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++IFP++ +D A RV FG++I+ I E LTG+ ++E I+ Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + +N A I++EL R+ + E +L+EAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD RK TL +Y Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++L+T LTKRMAEDLT Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I I + Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI-AISKKV 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 AA N ++D S+SKK+ + H+ + K+M AA LNFE AA RD++ LK++ Sbjct: 601 AADEN-ALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNT 655 >gi|238925135|ref|YP_002938652.1| excinuclease ABC subunit B [Eubacterium rectale ATCC 33656] gi|259710326|sp|C4ZHN1|UVRB_EUBR3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238876811|gb|ACR76518.1| excinuclease ABC subunit B [Eubacterium rectale ATCC 33656] Length = 660 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI A+ +P ++++ Sbjct: 3 FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R Sbjct: 63 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G ++ +L +L+ QY R Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARALIDLQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++IFP++ +D A RV FG++I+ I E LTG+ ++E I+ Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + +N A I++EL R+ + E +L+EAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD RK TL +Y Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++L+T LTKRMAEDLT Y+ E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I I + Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI-AISKKV 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 AA N ++D S+SKK+ + H+ + K+M AA LNFE AA RD++ LK++ Sbjct: 601 AADEN-ALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNT 655 >gi|206901994|ref|YP_002250600.1| excinuclease ABC, B subunit [Dictyoglomus thermophilum H-6-12] gi|206741097|gb|ACI20155.1| excinuclease ABC, B subunit [Dictyoglomus thermophilum H-6-12] Length = 662 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/650 (54%), Positives = 462/650 (71%), Gaps = 4/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P GDQP AI +L +G+ + Q L+GVTGSGKTFTMA +I +Q+P +V+A Sbjct: 4 FILVSEFKPCGDQPQAIEKLTEGVKRGLRYQTLIGVTGSGKTFTMANIIANVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++IDR+RH Sbjct: 64 PNKTLAAQLYSEFKEFFPYNAVEYFVSYYDYYQPEAYIPQTDTYIEKDADINDRIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL R D IVV+SVSCIYG+GS Y++MI+ +K G+ + + LL L+K QY+R Sbjct: 124 STTSSLLSRRDVIVVASVSCIYGLGSPTDYAEMILMVKRGEDLPRDTLLRKLIKLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD +E+FP E A R+ +G+ IE ISE PL G+++ + + IY Sbjct: 184 DYEFTRGKFRVRGDVVEVFPIGGE-TAIRIEYWGDTIERISEIDPLNGKRVVDFNEVFIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+ P + A++ IK EL+ RL EL +G+ LEA+RLE R YD+E+L G C+ Sbjct: 243 PATHYIAPTEKMERAIESIKRELEERLEELRSQGKFLEAKRLEARTLYDIELLREVGYCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y P+D L+F+DESH+TIPQ+ MY GD RK L EY Sbjct: 303 GIENYSRHFDGRKPGEPPYTLLDYFPDDFLVFIDESHLTIPQLRAMYHGDKSRKDNLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ P I VSATP +EL + +VEQ+IRPTGL+DP +E Sbjct: 363 GFRLPSAYDNRPLTFEEFWERVPQVIFVSATPAEFELSVSEQ-VVEQLIRPTGLLDPEIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + Q++ + EI +G R+L+T LTKR AEDL EYL I V Y+HSE++TLE Sbjct: 422 VHPTEGQIDHLISEIKKVVARGERVLVTTLTKRTAEDLVEYLSNLGINVTYLHSEIETLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R I++ LRLGKFDVLVGINLLREGLD+PE LVAILDAD+EGFLRS+ SLIQ +GRAAR Sbjct: 482 RTGILQSLRLGKFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSERSLIQVMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KVI+YAD IT S++ AI+ET RRR Q+E+N+ H I P+S+K+ + EV D +E Sbjct: 542 NVNGKVIMYADVITDSMRRAIEETQRRRRIQMEYNQAHGITPKSIKKPVKEVFD--FVEA 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + + A LS + + +K L K+M+ AA L+FE+AA +RD+I Sbjct: 600 VSEKKVDYKAVSKKLSIDEIEEVIKQLEKEMYEAAAELDFEKAAYLRDQI 649 >gi|331697648|ref|YP_004333887.1| UvrABC system protein B [Pseudonocardia dioxanivorans CB1190] gi|326952337|gb|AEA26034.1| UvrABC system protein B [Pseudonocardia dioxanivorans CB1190] Length = 733 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/692 (51%), Positives = 484/692 (69%), Gaps = 32/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAI +L + + + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 40 FEVVSEYEPAGDQPAAIDELERRLRAGEQDVVLLGATGTGKSATTAWLIERVQRPTLVMA 99 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN ++R+RH Sbjct: 100 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINSDVERLRH 159 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LL R D +VV+SVSCIYG+G+ +SY VQL +G VE+ LL +LV QY R Sbjct: 160 SATQNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLDVGSEVERDALLRALVDVQYTRN 219 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ FG++IE + +PLTG IR V+T++I+ Sbjct: 220 DMAFARGTFRVRGDTVEIIPAY-EELAIRIEFFGDEIEALYYLHPLTGDVIRQVDTVRIF 278 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL+ RL ELE++G++LEAQRL R YD+EM+ G C Sbjct: 279 PATHYVAGPERMERAVRDIEAELEERLAELERQGKMLEAQRLRMRTQYDIEMIRQVGFCS 338 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y P+D LL +DESHVT+PQI GMY GD RK L E+ Sbjct: 339 GIENYSRHIDGRAAGSAPATLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEF 398 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG++EL + G VEQ+IRPTGLVDP V Sbjct: 399 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGAYELSRTGGEFVEQVIRPTGLVDPEVV 458 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 459 VKPTKGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 518 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 519 RVELLRQLRTGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 578 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YADT+T+S+Q AIDET RRR KQ+ +N + I+PQ +++KI +++D + E Sbjct: 579 NVSGQVHMYADTVTESMQHAIDETDRRRAKQIAYNTEKGIDPQPLRKKIADILDQVYREA 638 Query: 740 ----------------------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771 +A++ I S+ + + ++ + QM Sbjct: 639 EDGEVPVGGSGRNQSRGKRAAGEPGRATASASSGIVAGRDTKSMPRAELADLIQQMSDQM 698 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR+RDEI LK +G+D Sbjct: 699 LAAARDLQFELAARLRDEIADLKKE--MRGMD 728 >gi|228903640|ref|ZP_04067760.1| UvrABC system protein B [Bacillus thuringiensis IBL 4222] gi|228855908|gb|EEN00448.1| UvrABC system protein B [Bacillus thuringiensis IBL 4222] Length = 658 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G + +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKGRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|104773722|ref|YP_618702.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|16124250|gb|AAL14788.1| UvrB [Lactobacillus delbrueckii] gi|103422803|emb|CAI97444.1| Excinuclease ABC, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 680 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI QL G + +K Q+L G TG+GKT+TMA VI M +P +V+ Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ RND IVV+SVSCIYG+G Y ++ + G E+ LL LV QY R Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD +E+FP+ D A+R+ FG++I+ I E PLTG+ ++I ++ Sbjct: 190 DIDLQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ IK E+ ++ + EKEG+LLEA+R++QR TYDLEML G Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R GEPP TL ++ P+DSL+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL + IVEQ+IRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ LIQT+GRAAR Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S+++AIDET RRR Q+++N++H I P+++ + + ++I + + Sbjct: 549 NANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + S D L+ K+ K + +L++QM AA L+FE AA +RD I L+ S Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665 >gi|229072613|ref|ZP_04205815.1| UvrABC system protein B [Bacillus cereus F65185] gi|228710589|gb|EEL62562.1| UvrABC system protein B [Bacillus cereus F65185] Length = 658 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYFPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + +++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|317124799|ref|YP_004098911.1| excinuclease ABC subunit B [Intrasporangium calvum DSM 43043] gi|315588887|gb|ADU48184.1| Excinuclease ABC subunit B [Intrasporangium calvum DSM 43043] Length = 707 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/690 (50%), Positives = 479/690 (69%), Gaps = 33/690 (4%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 + + FQ+ ++Y PSGDQP AI +L + I + E+ +LLG TG+GK+ T A +IE +QRP Sbjct: 9 RTVAPFQVISEYQPSGDQPRAIDELTRRIRAGEQDVVLLGATGTGKSATTAWLIEQVQRP 68 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS+N+++ Sbjct: 69 TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSVNDEV 128 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 +R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y + ++K+G+ V++ LL V+ Sbjct: 129 ERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARIKVGEEVDRDSLLRRFVEM 188 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D+ RGTFRV GD++EI P + E++A R+ FG++IE I +P+TG+ + + Sbjct: 189 QYTRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIERIYTLHPVTGEVVHEEQ 247 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++ SHYV + A++ I+ EL+ +L EK+G+LLEAQRL R YD+EM+ Sbjct: 248 EMYVFPASHYVAGPERMERAIRGIELELEDQLASFEKQGKLLEAQRLRMRTAYDIEMMRQ 307 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENYSR++ GR PG P L +Y P+D LL +DESH T+PQI MY GD RK Sbjct: 308 VGFCSGIENYSRHIDGRGPGSAPNCLIDYFPDDFLLVIDESHQTVPQIGAMYEGDMSRKR 367 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC--QGIIVEQIIRPTG 553 L E+GFRLPS MDNRPL++EE+ T+ +SATPG +EL + G VEQIIRPTG Sbjct: 368 MLVEHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGEYELAKSGRSGPPVEQIIRPTG 427 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP V ++ + Q++D+ DEI + + R+L+T LTK+MAEDLT+YL ++ IRVRY+H Sbjct: 428 LIDPEVVLKPTKGQIDDLMDEIRIRVDRNERVLVTTLTKKMAEDLTDYLLDKGIRVRYLH 487 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ TL R+E++R+LR G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQ Sbjct: 488 SDIDTLRRVELLRELRQGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSARSLIQ 547 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 TIGRAARNV+ +V +YAD IT S+Q A+DET RRR+KQL +N++ I+PQ +++KI ++ Sbjct: 548 TIGRAARNVSGQVHMYADKITPSMQEALDETNRRRDKQLAYNREKGIDPQPLRKKIADIT 607 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAH-----------------------------L 764 D + EDA T + I + ++ K G A + Sbjct: 608 DLLQREDADTQEL-IGSGRMQSRGKSGAARGAVAADVGVSSGRRGERPADLAAADLAGLI 666 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + +QMH AA L+FE AAR+RDE+ LK Sbjct: 667 QEMTEQMHQAAAELHFELAARLRDEVSDLK 696 >gi|86607183|ref|YP_475946.1| excinuclease ABC subunit B [Synechococcus sp. JA-3-3Ab] gi|123505027|sp|Q2JRR3|UVRB_SYNJA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|86555725|gb|ABD00683.1| excinuclease ABC, B subunit [Synechococcus sp. JA-3-3Ab] Length = 695 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/688 (53%), Positives = 469/688 (68%), Gaps = 40/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIA L+K I + Q LLG TG+GKTFT+A I+ + RP +VMA Sbjct: 4 FQLVSSYQPTGDQPKAIAGLVKSILEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + FP+NAVEYF+SYYDYYQPEAYVP TDTYI K SSIN++ID +RH Sbjct: 64 PNKTLAAQLCNELRELFPYNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+SVSCIYG+G E Y + + ++G + Q+E+L L QY+R Sbjct: 124 SATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFQVGQEINQREVLRDLAGIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EI P++ ED R+ FG++IE I P+TG+ + ++ +++Y Sbjct: 184 DLELARGRFRVKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILTSLSALRVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A+ I++EL+ +L K+G+LLEAQRLEQR YDLEML G C Sbjct: 243 PARHFVTPEAQLQQAILNIEQELEEQLAFFRKQGKLLEAQRLEQRTRYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR GEPP L +Y D LL VDESHVT+PQI GMY GD RK L + Sbjct: 303 GIENYSRHLTGRKEGEPPACLVDYFKANDWLLVVDESHVTVPQIRGMYNGDRARKQVLVD 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC------------------- 540 +GFRLPS +DNRPL+ EE+ + VSATPG+WELEQ Sbjct: 363 HGFRLPSALDNRPLKAEEFWAKVHQCVFVSATPGNWELEQSGAQFETVVENGKTLKFYVP 422 Query: 541 -QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL---AAQQGL--RILLTVLTKRM 594 G ++EQ+IRPTG+VDP V +R QVED+ EI L +QQGL R+++T LTKRM Sbjct: 423 GTGRVIEQVIRPTGVVDPEVHVRPTAGQVEDLLGEIYLRLERSQQGLPERVIVTTLTKRM 482 Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AEDLTEYL ER IRVRY+HSE+ ++ERIEI++D R G FDVLVG+NLLREGLD+PE LV Sbjct: 483 AEDLTEYLQERGIRVRYLHSEISSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVSLV 542 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 AILDADKEGFLR++ SLIQ IGRAARNV V++YADT+T S+ AI ET RRRE QL++ Sbjct: 543 AILDADKEGFLRAERSLIQMIGRAARNVRGTVVMYADTLTGSMARAIAETQRRREIQLQY 602 Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-----AQQLSLSKKK---GKAHLKS 766 N++HNI P+ + +K I L + ++ A ++ LS+ G+ LK Sbjct: 603 NRQHNITPKPIIKKNSNAILSFLAISRKLNSQDLEKAFPVADEIPLSEIPELIGQLELK- 661 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 M AA NL FEEAA++RD+IK+L+ Sbjct: 662 ----MKAAAKNLEFEEAAQLRDQIKKLR 685 >gi|119488976|ref|ZP_01621911.1| excinuclease ABC subunit B [Lyngbya sp. PCC 8106] gi|119454932|gb|EAW36075.1| excinuclease ABC subunit B [Lyngbya sp. PCC 8106] Length = 653 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/652 (53%), Positives = 458/652 (70%), Gaps = 14/652 (2%) Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210 GDQP AIA+L+K I + + LLG TG+GKTFT+A V+E + RP +V+A NK LAAQL Sbjct: 2 GDQPQAIAKLVKSIQAHHQFTTLLGATGTGKTFTIAAVVEKIGRPTLVLAHNKTLAAQLC 61 Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +RHSATRSL ER Sbjct: 62 NELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRHSATRSLFERR 121 Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 D IVV+S+SCIYG+G Y + + L++G+ + Q++LL L QY R D + RG FR Sbjct: 122 DVIVVASISCIYGLGIPTEYLKAAIPLRVGEELNQRQLLRDLASVQYTRNDTELTRGRFR 181 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + GD +EI P++ ED RV FG++++ I P+TG+ +++VE + +Y H+VTP+ Sbjct: 182 LKGDVLEIGPAY-EDRIIRVEFFGDEVDAIRYIDPVTGEVLQSVEALNVYPARHFVTPQD 240 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 L A I+ ELK ++ LE G+LLEAQRL QR YDLEML G C +ENYSR+L Sbjct: 241 RLEVACNDIEAELKQQVQALENAGKLLEAQRLNQRTRYDLEMLREVGYCNGVENYSRHLA 300 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510 GR GE P L +Y P+D LL +DESHVTIPQI GMY GD RK L E+GFRLPS DN Sbjct: 301 GRQAGESPECLIDYFPKDWLLVIDESHVTIPQIRGMYNGDQSRKRVLVEHGFRLPSAADN 360 Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570 RPL+ EE+ I VSATPG WE+EQ QG +VEQIIRPTG+VDP + +R Q++D Sbjct: 361 RPLKAEEFWGKMNQCIFVSATPGDWEIEQSQGEVVEQIIRPTGVVDPEIFVRPTEGQIDD 420 Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 ++ EI ++ R+L+T LTKRMAEDLTEYL +R ++VRY+HSE+K+++RIEIIRDL+ Sbjct: 421 LFGEIQERVERDERVLITTLTKRMAEDLTEYLQDRGVKVRYLHSEIKSIQRIEIIRDLQQ 480 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 G FDVL+G+NLLREGLD+P+ LV ILDADKEGFLR+ SLIQTIGRAARN+ + ILYA Sbjct: 481 GVFDVLIGVNLLREGLDLPQVSLVVILDADKEGFLRATRSLIQTIGRAARNIRGQAILYA 540 Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750 D +T S+ AIDET RRR QLE+N+KH I PQ++ +K I D + ++A Sbjct: 541 DNLTDSMIKAIDETERRRTIQLEYNEKHGIIPQTIVKKFSNAI-----LDFLDVSRRLNA 595 Query: 751 QQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 QQL LS ++ + L +QM AA L FEEAA++RD IK L+ Sbjct: 596 QQLEEVYEQVDELSLEEIPNFIGQLEQQMKEAAKKLEFEEAAKLRDRIKLLR 647 >gi|163841033|ref|YP_001625437.1| excinuclease ABC subunit B [Renibacterium salmoninarum ATCC 33209] gi|189037989|sp|A9WT85|UVRB_RENSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|162954509|gb|ABY24024.1| excinuclease ABC, B subunit [Renibacterium salmoninarum ATCC 33209] Length = 693 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/673 (52%), Positives = 475/673 (70%), Gaps = 24/673 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAIA L + I++ EK +LLG TG+GK+ T A +IE +QRP +VM Sbjct: 14 FEVISEYQPAGDQPAAIADLTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+NE+++R+R+ Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNEEVERLRY 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV++VSCIYG+G+ E Y +V LK GD V++ +LL V QY R Sbjct: 134 SATNSLLTRRDVIVVATVSCIYGLGTPEEYVAGMVTLKQGDRVDRDQLLRQFVGIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E+ A R+ FG++IE+I +PLTG+ IR + ++ Sbjct: 194 DIDFHRGTFRVRGDTVEITPMY-EEQALRIEFFGDEIEKIFTLHPLTGEIIREENEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL +RL ELE + +LLEAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGPERMAKAITRIEDELAVRLKELEGQNKLLEAQRLRMRTTYDLEMMQQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR+ G P L +Y P+D LL +DESHVT+PQI MY GD RK TL ++ Sbjct: 313 GIENYSRHIDGRDSGSAPSCLIDYFPDDFLLVIDESHVTLPQIGAMYEGDMSRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +E+ + G +V+QIIRPTGL+DP V Sbjct: 373 GFRLPSAMDNRPLKWDEFLERVGQTVYLSATPGKYEMAKADG-VVQQIIRPTGLIDPEVI 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ + Q++D+ EI ++ R+L+T LTKRMAEDLTEYL ++V+Y+HS+V TL Sbjct: 432 IKPTKGQIDDLLGEIRTRVERDERVLVTTLTKRMAEDLTEYLLGHGVKVQYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRLGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AIDET RRR Q+ +N +H ++P ++++I ++ D + ED Sbjct: 552 NVSGEVHMYADKITDSMAKAIDETNRRRAIQVAYNTEHGVDPTPLRKRIADITDSLARED 611 Query: 741 AATTNISIDAQQLSLSKKKGKAH-------------------LKSLRKQMHLAADNLNFE 781 A T ++ A + + +GKA ++ L QMH AA L FE Sbjct: 612 ADTKSLLESAGK---GRSRGKAPVPVRHDGLAAVPAEDLVDLIEQLTAQMHSAAGELQFE 668 Query: 782 EAARIRDEIKRLK 794 AAR+RDE+ LK Sbjct: 669 LAARLRDEVGDLK 681 >gi|206970247|ref|ZP_03231200.1| excinuclease ABC, B subunit [Bacillus cereus AH1134] gi|206734824|gb|EDZ51993.1| excinuclease ABC, B subunit [Bacillus cereus AH1134] Length = 658 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFGEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|228955404|ref|ZP_04117409.1| UvrABC system protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804196|gb|EEM50810.1| UvrABC system protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 658 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EAETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|229082372|ref|ZP_04214835.1| UvrABC system protein B [Bacillus cereus Rock4-2] gi|228700804|gb|EEL53327.1| UvrABC system protein B [Bacillus cereus Rock4-2] Length = 658 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD ITKS+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + +++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|75759008|ref|ZP_00739116.1| Excinuclease ABC subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493474|gb|EAO56582.1| Excinuclease ABC subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 658 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G + +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEKYRELVVSLRVGMEKGRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y PED L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|309811766|ref|ZP_07705540.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185] gi|308434187|gb|EFP58045.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185] Length = 701 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/689 (50%), Positives = 477/689 (69%), Gaps = 27/689 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + ++++++ P+GDQP AIA+L K + + E+ +LLG TG+GK+ T A +IE Sbjct: 4 VTDLQRSVAPIKVESEFEPAGDQPKAIAELSKRVKAGEQDIVLLGATGTGKSATTAWLIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +V+APNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS Sbjct: 64 QVQRPTLVLAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y + +LK+G + + ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARLKVGQEINRDELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V+ QY R D+ RGTFRV GD++EI P + E++A R+ FG++I+ + +PLTG+ Sbjct: 184 RFVEMQYTRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRLYTLHPLTGEI 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + ++ +HYV + A+ I+ EL +L E EG++LEAQRL R TYD+ Sbjct: 243 VNEESEMYVFPATHYVAGPERMERAIAGIEVELGDQLKRFEAEGKMLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYSR++ GR PG P TL +Y PED LL +DESH T+PQI MY GD Sbjct: 303 EMMRQVGSCAGIENYSRHMDGRGPGTAPNTLLDYFPEDFLLVIDESHQTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS MDNRPL++EE+ T+ +SATPG +E+ + G VEQ+IR Sbjct: 363 MSRKRTLVDHGFRLPSAMDNRPLKWEEFLEHIGQTVYLSATPGDYEMSKSDG-YVEQVIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ + Q++D+ EI + R+L+T LTK+MAEDLT+YL ++ +RVR Sbjct: 422 PTGLVDPEIVLKPTKGQIDDLLGEIRTRTDKNERVLVTTLTKKMAEDLTDYLLDKGVRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS S Sbjct: 482 YLHSEVDTLRRVELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T S+Q AIDET+RRRE Q+ +N + I+PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTPSMQEAIDETSRRRELQIAYNTEKGIDPQPLRKKIA 601 Query: 731 EVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAHLK 765 ++ D + E A T + + A++ + S ++ Sbjct: 602 DITDMLQRESADTDALLGSGRSMSRGKGRGGSGAASADANVAAGAKREASSAADLAGLIQ 661 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L+ QM AA L FE AAR+RDE++ LK Sbjct: 662 ELQAQMSEAASELQFELAARLRDELRDLK 690 >gi|159038906|ref|YP_001538159.1| excinuclease ABC subunit B [Salinispora arenicola CNS-205] gi|157917741|gb|ABV99168.1| excinuclease ABC, B subunit [Salinispora arenicola CNS-205] Length = 700 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/687 (51%), Positives = 470/687 (68%), Gaps = 27/687 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P+GDQPAAI L + + ++ +LLG TG+GK+ T A +IE +QRP +V+A Sbjct: 12 FQVVSDFQPAGDQPAAIDDLERRVRRGDRHTVLLGATGTGKSATTAWLIERLQRPTLVLA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQL EF P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH Sbjct: 72 PNKTLCAQLAKEFSELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV++VS IYG+G+ E Y V++ G +++ +LL LV QY R Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVATGQELDRDQLLRRLVDIQYTRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E++A R+ +FG+++E + PLTG +R V+ + I+ Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVERLYYLNPLTGDVVREVDHLLIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY + A++ I+ EL RL ELE+ LLEAQRL R TYD+EM+ G C Sbjct: 251 PATHYAAGPARMERAIRDIETELGERLAELERRSSLLEAQRLRMRTTYDIEMMRQVGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PG PP L +Y P+D L VDESHVTIPQ+ GMY GD RK L ++ Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQVGGMYEGDASRKRMLIDH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRF+E+ + +SATPGSWELE QG VEQ+IRPTGLVDP V Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGSWELEHAQGEYVEQVIRPTGLVDPEVV 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDL++YL E IRVRY+HSEV TL Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ A+ ET RRR KQ+ HN+ H I+P+ +++KI +++D I E Sbjct: 551 NVSGEVHMYADKITPSMAEAVGETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610 Query: 741 AAT-TNISIDAQQLSLSK-----------------KKGKAH------LKSLRKQMHLAAD 776 T T + +QLS K ++G A ++ L QM AA Sbjct: 611 EETETRVGGAVRQLSRGKAPVKETRSRSRAGAGPAREGMARAELAELIQELNGQMLAAAR 670 Query: 777 NLNFEEAARIRDEIKRLKSSPYFQGLD 803 L FE AARIRDEI LK +G+D Sbjct: 671 ELQFELAARIRDEISELKKE--LRGMD 695 >gi|295100025|emb|CBK89114.1| Excinuclease ABC subunit B [Eubacterium cylindroides T2-87] Length = 655 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/655 (53%), Positives = 462/655 (70%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L++G+ +K Q+LLG TG+GKTFT++ VI + RP +V A Sbjct: 4 FELVSDYKPMGDQPTAIKELVQGLKDHKKYQVLLGATGTGKTFTVSNVIAQVNRPTLVFA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+N VEYFVSY+DYYQPEAY+P+TDTYI+K + NE++D +R Sbjct: 64 HNKTLAGQLYSEFKEFFPNNRVEYFVSYFDYYQPEAYLPKTDTYIDKNTKTNEELDMLRM 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A S+LER D I+V+SV+ IYG + E Y MI L+ G ++++ EL+ +LV QQYKR Sbjct: 124 AAVNSVLERRDTIIVASVASIYGASNPEQYRHMIFTLRTGQTIDRNELMLALVHQQYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D +RGTFRV GD IEI P H + R+ +F ++IE I E P+TG + IY Sbjct: 184 DTDPLRGTFRVRGDVIEITPGHTDRYLIRIELFDDEIERICEVDPVTGHVNQAYHLYIIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y T + A I+EEL+ RL +K G+ LE +RLEQR YD+E L+ G C Sbjct: 244 PANGYATSMDVIKRAAASIEEELEDRLDYFDKMGKPLEKERLEQRCRYDIEALKEFGVCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD RK L EY Sbjct: 304 GIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKEVLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + P+ I VSATPG +ELE+ G ++EQIIRPTGL+DP VE Sbjct: 364 GFRLPSALDNRPLRFEEFESIIPSAIFVSATPGDYELEKVDGHVIEQIIRPTGLLDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ DEI + ++ R L+T LT RMAEDLT YL +++V ++H EV T+E Sbjct: 424 VRPIEGQIDDLVDEIKMRIKKNQRTLITTLTVRMAEDLTSYLKNMDLKVAWLHHEVTTIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR GK+DVLVGINLLREGLDIPE L+AILDADKEGFLRSK SLIQ IGRAAR Sbjct: 484 RTEIIHDLRQGKYDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSKRSLIQIIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YADTIT+S+Q AIDET RRR Q+E+NK+HNI P+++ + I +V+ ++ Sbjct: 544 NAEGKVIMYADTITESMQYAIDETNRRRSIQIEYNKEHNIVPKTIIKPIHDVVRSKETKE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + + K+ + LK++ ++M AA L+FE AA++RD + LK+ Sbjct: 604 MAAKYLK----KKKVGAKQKEVMLKNIEQEMKEAARTLDFERAAQLRDILLELKA 654 >gi|116511361|ref|YP_808577.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris SK11] gi|123320587|sp|Q031G7|UVRB_LACLS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116107015|gb|ABJ72155.1| Excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris SK11] Length = 692 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/684 (51%), Positives = 476/684 (69%), Gaps = 33/684 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI++L++ I + EK Q+L G TG+GKT+TM++VI +P +VMA Sbjct: 11 FELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 71 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y +V L+ G + + +LL+ LV Q++R Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + ++ I+ EL+ +L EG+LLEAQRLEQR YD+EML G C Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEAQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD RK L Y Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP VE Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ A++ R+ +T LTK+M+EDLT Y E I+V+YMHS++KTLE Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549 Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711 N VILY+D IT+S++ A+DET RRR+ Q Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRRDIQ 609 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771 + +N++H I PQ++K++I ++I D+ +DA +++KK+ KA +K L K+M Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGELE-EVDAS--AMNKKERKALVKKLEKEM 666 Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795 AA L+FE AA++RD + L++ Sbjct: 667 QQAAAALDFEGAAQLRDMVLELRA 690 >gi|125623401|ref|YP_001031884.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|189037980|sp|A2RIP3|UVRB_LACLM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|124492209|emb|CAL97138.1| UvrABC system protein B [Lactococcus lactis subsp. cremoris MG1363] gi|300070148|gb|ADJ59548.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris NZ9000] Length = 692 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/684 (51%), Positives = 476/684 (69%), Gaps = 33/684 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI++L++ I + EK Q+L G TG+GKT+TM++VI +P +VMA Sbjct: 11 FELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 71 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVSCIYG+GS + Y +V L+ G + + +LL+ LV Q++R Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ ++ A+RV FG++I+ I E LTGQ + V+ + I+ Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + ++ I+ EL+ +L EG+LLEAQRLEQR YD+EML G C Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEAQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD RK L Y Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +E+EQ IVEQIIRPTGL+DP VE Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ A++ R+ +T LTK+M+EDLT Y E I+V+YMHS++KTLE Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAAR Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549 Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711 N VILY+D IT+S++ A+DET RRR+ Q Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGKKYKITRSMKHAMDETARRRDIQ 609 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771 + +N++H I PQ++K++I ++I D+ +DA +++KK+ KA +K L K+M Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGELE-EVDAS--AMNKKERKALVKKLEKEM 666 Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795 AA L+FE AA++RD + L++ Sbjct: 667 QQAAAALDFEGAAQLRDMVLELRA 690 >gi|19703569|ref|NP_603131.1| excinuclease ABC subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22257069|sp|Q8RGR2|UVRB_FUSNN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|19713669|gb|AAL94430.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 663 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/653 (52%), Positives = 477/653 (73%), Gaps = 4/653 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ +DY P+GDQP AI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP+++ Sbjct: 4 NLFKIHSDYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ L+ +Y Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + ++ IK++LK+ + + E + +LLEAQRL QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL G+NPG+ P TLFEY P+D LLF+DESH+T+PQ+ GMY GD RK +L Sbjct: 303 YCKGIENYSRYLAGKNPGDTPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I E D I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIIKEIAE--DLIN 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 L+ + +++ +K + + L K++ + L+FE+A +RDE+ Sbjct: 601 LDYGIEEKKFENDKKVFRNKTDIEKEITKLEKKIKKLVEELDFEQAIILRDEM 653 >gi|228999910|ref|ZP_04159482.1| UvrABC system protein B [Bacillus mycoides Rock3-17] gi|229007463|ref|ZP_04165060.1| UvrABC system protein B [Bacillus mycoides Rock1-4] gi|228753851|gb|EEM03292.1| UvrABC system protein B [Bacillus mycoides Rock1-4] gi|228759852|gb|EEM08826.1| UvrABC system protein B [Bacillus mycoides Rock3-17] Length = 658 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/655 (53%), Positives = 477/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA Sbjct: 5 FEIVSEYSPQGDQPRAIKQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHVT+PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELELTPE-VVEQIIRPTGLLDPQID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT+S+ +AI+ET RRR+KQ +N++H I P+++++++ +VI Sbjct: 544 NEHGHVIMYADRITRSMGIAIEETKRRRQKQEAYNEEHGITPKTIQKEVRDVIRATTA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 602 AEETEVYEAGPAKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|332707351|ref|ZP_08427401.1| excinuclease ABC subunit B [Lyngbya majuscula 3L] gi|332353842|gb|EGJ33332.1| excinuclease ABC subunit B [Lyngbya majuscula 3L] Length = 714 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/665 (53%), Positives = 467/665 (70%), Gaps = 18/665 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F ++ + P+GDQP AI+QL + + ++Q LLG TG+GKTF++A VIE + +P +++ Sbjct: 27 LFNLEAPFQPTGDQPQAISQLTTYLKAGNRIQTLLGATGTGKTFSVASVIEKVGKPTLLL 86 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +R Sbjct: 87 AHNKTLAAQLCNELRGFFPHNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLR 146 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSATRSL ER D IVV+S+SCIYG+G Y + + L++ V+Q++LL LV QY R Sbjct: 147 HSATRSLFERRDVIVVASISCIYGLGIPSEYLKASIPLRVNTEVDQRQLLRDLVSVQYSR 206 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG ++VE + I Sbjct: 207 NDLELGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIHYVDPVTGGIFQSVEGVNI 265 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y H+VTP L A IK EL+ RL +LE+ G LLEAQRLEQR YDLEML G C Sbjct: 266 YPARHFVTPDERLEEACNAIKAELEERLAQLEQAGNLLEAQRLEQRTRYDLEMLLEIGYC 325 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSR+L GR GEPP L +Y PED LL VDESHVT+PQI GMY GD RK L + Sbjct: 326 NGVENYSRHLAGRKLGEPPECLIDYFPEDWLLVVDESHVTVPQIRGMYNGDRARKQVLID 385 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS DNRPL+ EE+ I VSATPG WE+E+ QG +VEQIIRPTG++DP + Sbjct: 386 HGFRLPSAADNRPLKAEEFWAKVNQCIFVSATPGDWEMEESQGRVVEQIIRPTGVLDPEI 445 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R QV+D+ EI R+L+T LTKRMAEDLTEYL ER+IR+ Y+HS++ ++ Sbjct: 446 FVRPTVAQVDDLLAEIKQRVDCQERVLVTTLTKRMAEDLTEYLQERDIRISYLHSDINSI 505 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI++ LR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 506 ERIEILQGLRQGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 565 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R+V + I+YADT+TKS++ AIDET RRR+ Q E+N K+NI PQ +++ +PIL Sbjct: 566 RHVRGQAIMYADTLTKSMRKAIDETNRRRKIQSEYNIKNNIIPQPIRKTAN---NPIL-- 620 Query: 740 DAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 ++S ++AQQ + +K + L +QM AA L FE AA++RD Sbjct: 621 --TFLDVSRRLNAQQFESVFEQVDDVPLEKIPELINQLEEQMKEAAKTLEFETAAKLRDR 678 Query: 790 IKRLK 794 IK+L+ Sbjct: 679 IKQLR 683 >gi|261350556|ref|ZP_05975973.1| excinuclease ABC subunit B [Methanobrevibacter smithii DSM 2374] gi|288861339|gb|EFC93637.1| excinuclease ABC subunit B [Methanobrevibacter smithii DSM 2374] Length = 655 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/657 (54%), Positives = 465/657 (70%), Gaps = 13/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI L+ GI+ EK Q LLGVTGSGKTFTMA VIE +Q+P +V++ Sbjct: 4 FKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID MRH Sbjct: 64 HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDIMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLL R+D IVVSSVSCIYG+GS E Y + + +GD+ ++ +++ LV QY+R Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGVGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEI P H RV +FG++I+ IS +TG+K +++ I+ Sbjct: 184 DIEFARGHFRVRGDVIEINPVH-GTPPVRVELFGDEIDAISLIDKVTGKKTESLKRYMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V + ++TA++ I +EL RL E +LLEAQRLEQR +D+EML+ G C Sbjct: 243 PAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS +L+GR GE P +L +Y PED L +DESHVT+PQI GMY GD RK TL E+ Sbjct: 303 GVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ I VSATPG++EL + IVEQIIRPTGLVDP V Sbjct: 363 GFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDPEVI 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QVED+ E+ A++ R+L+T LTK+MAEDLT+Y + ++VRYMHSE+ TLE Sbjct: 422 IRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLR++TSLIQTIGRAAR Sbjct: 482 RIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME--VIDPILL 738 N+N +VI+Y D +T S++ A T++RR+ Q+++N+KH I P++ K + + V++ + + Sbjct: 542 NINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDKKVVEDLDI 601 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E + I D +L +S L M AA L+FE AA +RD+I LK Sbjct: 602 EGTDISKIPKDELRLLIS---------DLENDMKEAAAKLDFERAASLRDQIATLKG 649 >gi|86608289|ref|YP_477051.1| excinuclease ABC subunit B [Synechococcus sp. JA-2-3B'a(2-13)] gi|123503229|sp|Q2JN87|UVRB_SYNJB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|86556831|gb|ABD01788.1| excinuclease ABC, B subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 695 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/688 (52%), Positives = 467/688 (67%), Gaps = 40/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIA L+K I + Q LLG TG+GKTFT+A I+ + RP +VMA Sbjct: 4 FQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FPHNAVEYF+SYYDYYQPEAYVP TDTYI K SSIN++ID +RH Sbjct: 64 HNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+SVSCIYG+G E Y + + K+G + Q+++L L QY+R Sbjct: 124 SATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++RG FR+ GD +EI P++ ED R+ FG++IE I P+TG+ + ++ +++Y Sbjct: 184 DLELVRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILNSLSALRVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A+ I++EL+ +L KEG+LLEAQRLEQR YDLEML G C Sbjct: 243 PARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR GEPP L +Y +D LL VDESHVT+PQI GMY GD RK L + Sbjct: 303 GIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQVLVD 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ------------------ 541 +GFRLPS +DNRPL+ EE+ I VSATPG+WELEQ + Sbjct: 363 HGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKFYVQ 422 Query: 542 --GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-----GLRILLTVLTKRM 594 G ++EQ+IRPTG+VDP V +R QV+D+ EI L ++ R+++T LTKRM Sbjct: 423 GSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLTKRM 482 Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AEDLTEYL ER IRVRY+HSE+ ++ERIEI++D R G FDVLVG+NLLREGLD+PE LV Sbjct: 483 AEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVSLV 542 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 AILDADKEGFLR++ SLIQ IGRAARNV V++YADT+T S+ AI ET RRRE QL++ Sbjct: 543 AILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQLQY 602 Query: 715 NKKHNINPQSVKEKIMEVIDPIL-----LEDAATTNISIDAQQLSLSKKK---GKAHLKS 766 N++HNI P+ + +K I L L D AQ++ LS+ G+ LK Sbjct: 603 NRQHNITPKPIVKKNSNAILSFLAISRKLNDPDLEKAFQAAQEIPLSEIPELIGQLELK- 661 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 M AA NL FEEAA++RD IK+L+ Sbjct: 662 ----MKEAAKNLEFEEAAQLRDRIKKLR 685 >gi|298244892|ref|ZP_06968698.1| excinuclease ABC, B subunit [Ktedonobacter racemifer DSM 44963] gi|297552373|gb|EFH86238.1| excinuclease ABC, B subunit [Ktedonobacter racemifer DSM 44963] Length = 662 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/660 (53%), Positives = 483/660 (73%), Gaps = 11/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP AI +L +GI + ++ Q LLGVTGSGKT+T+AKVIE +Q+P +V+A Sbjct: 4 FKVESPFEPTGDQPQAIVELAEGIRNNQRFQTLLGVTGSGKTYTVAKVIEQVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSE+K FFP+NAVEYFVSYYDYYQPEAY+ RTDTY+EKES +NE+I+++R Sbjct: 64 PNKTLAAQLYSEYKEFFPNNAVEYFVSYYDYYQPEAYIARTDTYVEKESMLNEEIEKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D ++V+SVSCIYG+GS E Y ++++ LK+G+ + ++L L QY+R Sbjct: 124 SATRSLFERRDVLIVASVSCIYGLGSPEEYGEVVLTLKVGEERRRDKILRHLNSIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D +RG FRV GD +EIFP++ EDVA RV FG++IE ++E PLTG+ + + IY Sbjct: 184 DANFVRGRFRVRGDVLEIFPAY-EDVAVRVEFFGDEIERMTEIDPLTGEVLGQRTRLDIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + LN ++ I+EEL+ RL ELE EG+LLE RL+QR +D+EML TG C Sbjct: 243 PAKHWVTTQERLNKSISLIEEELEQRLEELEAEGKLLEHARLKQRTNFDIEMLRETGICS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR GE P TL +Y+PE+ LL VDESH+++PQ+ GM+ GD RK L +Y Sbjct: 303 GVENYSRHLAGRAAGEQPWTLLDYLPENFLLVVDESHISLPQVRGMFAGDRSRKQILVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ I VSATPG +E E Q IVEQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLTFPEFEHKLKQAIFVSATPGPYEYEHSQA-IVEQIIRPTGLIDPEIT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI + ++G R+L+T LTK+MAEDL +Y+ E +I+V Y+HSE+ T+E Sbjct: 422 VRPTRGQIDDLIAEIRIRVEKGQRVLVTTLTKKMAEDLADYMQELSIKVHYLHSEIDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQT+GRAAR Sbjct: 482 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSEGSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V VI+YAD +T+S++ AIDET RRR+ Q +N++HNI P+ +K+++ + + L+ Sbjct: 542 HVEGSVIMYADNVTRSMRRAIDETNRRRKIQEGYNEQHNITPRGIKKEVKTLSE--RLKA 599 Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793 A D + + + K + +K L QM AA L FE+A ++RD EI+RL Sbjct: 600 MAGPEAGADGKTATAVAGIPKDEALRLIKDLESQMRSAAKQLEFEKAGQLRDQIIEIRRL 659 >gi|328944098|ref|ZP_08241563.1| UvrABC system protein B [Atopobium vaginae DSM 15829] gi|327492067|gb|EGF23841.1| UvrABC system protein B [Atopobium vaginae DSM 15829] Length = 760 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/718 (49%), Positives = 480/718 (66%), Gaps = 40/718 (5%) Query: 116 LLKNGKIWTPHRSWSIN----NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKV 170 L+ G++ + + + HSK FQ+ D+ P GDQP AI L KG+ + + Sbjct: 12 LILKGRMMSAYNHFGAELVRFGHSKQQQPFQVVADFAPKGDQPRAINALTKGVMQDKLRY 71 Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 Q LLGVTGSGKTFTMA +IE Q+ +++ PNK LAAQ+ SE K FPHNAV YFVSYYD Sbjct: 72 QTLLGVTGSGKTFTMANLIEQTQKTTLIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYD 131 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 YYQPEAY+P+TDTYIEK+SSINE+++++RH T SLL R D IVV+SVSCIYGIGS + Y Sbjct: 132 YYQPEAYIPQTDTYIEKDSSINEEVEKLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDY 191 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + + + +E+ + + SL+ QY R D+ +IRGTFRV GD +++F + E RV Sbjct: 192 AGLAPTIDKNTPLERDDFIRSLIDIQYDRNDVDLIRGTFRVRGDCVDVFTPYGEH-PIRV 250 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 S FG++IE I+EF +TG + + + I+ +HYV+ RP +N A+ I++EL+ R+ EL Sbjct: 251 SFFGDEIEMIAEFDEVTGDTLSQYDALPIWPATHYVSARPKINHAILTIRDELEARVQEL 310 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 + LLEAQRL+QR +YDLEMLET G C IENYSR+L GR PGE P TL +Y PED L Sbjct: 311 KAHNMLLEAQRLQQRCSYDLEMLETMGFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDML 370 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530 +DESHV++PQI GMY GD RK TL ++GFRLP +DNRPLR++E+ P + VSA Sbjct: 371 CIIDESHVSVPQIRGMYEGDRSRKITLVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSA 430 Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590 TPG +EL Q + VEQ+IRPTGL+DP VEIR R Q++D+ DEI + R+L+T L Sbjct: 431 TPGDYELSVSQNV-VEQVIRPTGLLDPRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTL 489 Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK MAEDLTE+L + +V YMHS+ TL+RI+IIR LR G DVLVGINLLREGLDIPE Sbjct: 490 TKHMAEDLTEHLLDEGFKVNYMHSDTATLDRIDIIRALRTGTLDVLVGINLLREGLDIPE 549 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LVAILDADKEGFLR+K SLIQT+GRAARN VI+YAD +T S+Q+A+DET RRR Sbjct: 550 VSLVAILDADKEGFLRNKRSLIQTMGRAARNAAGSVIMYADRMTDSMQIAVDETKRRRTL 609 Query: 711 QLEHNKKHNINPQSVKEKIMEVI----------------DPILLEDAATTNISIDAQQLS 754 Q+ +N +H+I PQ++K+ +++V D + + T + + + Q S Sbjct: 610 QMRYNAQHHIVPQTIKKSMVDVTSFIQAAHETLDSKQRKDGVFYTASGTLSDNNETHQPS 669 Query: 755 LSKKKGKAH-----------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 S + A L +L+ +M A+ +++FE AA++RD+I ++S Sbjct: 670 KSSGENSATQLCSSLEGMPKEDVAKILGALQDEMLAASASMDFERAAKLRDQIVEVQS 727 >gi|218900287|ref|YP_002448698.1| excinuclease ABC, B subunit [Bacillus cereus G9842] gi|228910994|ref|ZP_04074802.1| UvrABC system protein B [Bacillus thuringiensis IBL 200] gi|218543131|gb|ACK95525.1| excinuclease ABC, B subunit [Bacillus cereus G9842] gi|228848649|gb|EEM93495.1| UvrABC system protein B [Bacillus thuringiensis IBL 200] Length = 658 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|116513719|ref|YP_812625.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093034|gb|ABJ58187.1| Excinuclease ABC subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 680 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/657 (51%), Positives = 468/657 (71%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI QL G + +K Q+L G TG+GKT+TMA VI M +P +V+ Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ RND IVV+SVSCIYG+G Y ++ + G E+ LL LV QY R Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD +E+FP+ D A+R+ FG++I+ I E PLTG+ ++I ++ Sbjct: 190 DIDLQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ IK E+ ++ + EKEG+LLEA+R++QR TYDLEML G Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R GEPP TL ++ P+DSL+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL + IVEQ+IRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ LIQT+GRAAR Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S+++AIDET RRR Q+++N++H I P+++ + + ++I + + Sbjct: 549 NANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608 Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + S D L+ K+ K + +L++QM AA L+FE AA +RD I L+ S Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665 >gi|228993874|ref|ZP_04153777.1| UvrABC system protein B [Bacillus pseudomycoides DSM 12442] gi|228765825|gb|EEM14476.1| UvrABC system protein B [Bacillus pseudomycoides DSM 12442] Length = 658 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/655 (53%), Positives = 477/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA Sbjct: 5 FEIVSEYSPQGDQPRAIQQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + E + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHVT+PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELELTPE-VVEQIIRPTGLLDPQID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ + R+L+T LTK+M+EDLT+YL + I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVL+GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT+S+ +AI+ET RRR+KQ +N++H I P+++++++ +VI Sbjct: 544 NEHGHVIMYADRITRSMGIAIEETKRRRQKQEAYNEEHGITPKTIQKEVRDVIRATTA-- 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 602 AEETEVYEAGPAKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|196045644|ref|ZP_03112874.1| excinuclease ABC, B subunit [Bacillus cereus 03BB108] gi|225867129|ref|YP_002752507.1| excinuclease ABC, B subunit [Bacillus cereus 03BB102] gi|196023475|gb|EDX62152.1| excinuclease ABC, B subunit [Bacillus cereus 03BB108] gi|225786785|gb|ACO27002.1| excinuclease ABC, B subunit [Bacillus cereus 03BB102] Length = 658 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/655 (54%), Positives = 477/655 (72%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA Sbjct: 5 FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH Sbjct: 65 HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G ++ +LL LV QY R Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ L++ R+ FG++I+ I E LTG+ + + + I+ Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL G+LLEAQR+EQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHV++PQ+ MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ I VSATPG +ELEQ +I EQIIRPTGL+DPP++ Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ EI + R+L+T LTK+M+EDLT+YL + I+V Y+HSEVKTLE Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT+S+ +AI+ET RRR Q +N++H I P+++++ + +VI + Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A++ ++KK+ + + + +M AA L+FE AA +RD + LK+ Sbjct: 604 EPEIYEVTPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKA 656 >gi|325291329|ref|YP_004267510.1| Excinuclease ABC subunit B [Syntrophobotulus glycolicus DSM 8271] gi|324966730|gb|ADY57509.1| Excinuclease ABC subunit B [Syntrophobotulus glycolicus DSM 8271] Length = 708 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/655 (54%), Positives = 466/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y GDQP A+ +L G+ +K Q LLGVTGSGKTFTMA +I +PA+V+A Sbjct: 25 FNLHAPYRLEGDQPQAVDKLTAGVLKGKKHQTLLGVTGSGKTFTMANIIAGANKPALVLA 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SINE+I+++RH Sbjct: 85 HNKTLAAQLYCEFKEFFPENAVEYFVSYYDYYQPEAYVAFSDTYIEKDASINEEIEKLRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS + Y M++ L+ +++ ++L LV+ QY R Sbjct: 145 SATAALFERRDVIVVASVSCIYGMGSPDEYRDMVLSLRQNQEIDRNKILRKLVEIQYDRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EI P+ + A RV +FG++IE I E LTG+ + + I+ Sbjct: 205 DIAFARGTFRVRGDIVEICPASSSEKAIRVELFGDEIEHIYEVNVLTGEILGERRHVSIF 264 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYVT R L A+ I+ EL+ RL L +L+EAQRLEQR YD+EML G C Sbjct: 265 PNSHYVTEREKLLKAVGNIEIELEERLQVLRGREKLVEAQRLEQRTRYDVEMLRELGFCN 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PGE P TL + P+D LLFVDESH T+PQI GMY GD RK TL +Y Sbjct: 325 GIENYSRHLTFREPGETPYTLLHFFPKDFLLFVDESHRTLPQIRGMYEGDRSRKETLVDY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF E+ P I VSATPG +ELE + VEQIIRPTGL+DP V+ Sbjct: 385 GFRLPSALDNRPLRFNEFEQYTPLRIYVSATPGPYELEHSP-VSVEQIIRPTGLLDPEVD 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI L + RIL+T LTKRM+E+LT YL + N++VRY+HS++ LE Sbjct: 444 VRPIKGQIDDLIGEIRLRIDRDERILVTTLTKRMSEELTNYLKQLNMKVRYLHSDISALE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R+LRLG+ D++VGINLLREGLD+PE LVAILDADKEGFLRS++SLIQTIGRAAR Sbjct: 504 RMEILRELRLGEIDIIVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD +T+S+++AI+ET RRR+ Q E+N ++ I PQ+++++I EV + Sbjct: 564 NANGKVIMYADKLTRSMKIAIEETNRRRKIQNEYNVRNVITPQTIRKQIYEVPEAT---- 619 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + +S ++ + +++ +M+ AA +L+FE AA +RD I LK Sbjct: 620 RAAEKEAGYGKTGEVSPEERQKLIQAFEAEMYKAAKDLDFERAAELRDAIIELKG 674 >gi|332638909|ref|ZP_08417772.1| excinuclease ABC subunit B [Weissella cibaria KACC 11862] Length = 670 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/658 (51%), Positives = 471/658 (71%), Gaps = 6/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AI +L+ G+ + K Q+LLG TG+GKTFT++ VI +P +V++ Sbjct: 10 YEVVSKYEPTGDQPTAIDKLVTGLKNGVKEQILLGATGTGKTFTISNVIAQANKPVLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++R+ Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL RND IVV+SVS I+G+GS E Y+ ++ +++GD +E+ +L+ LV Q++R Sbjct: 130 SATASLLARNDTIVVASVSSIFGLGSPEQYNDHVINVRVGDVIERNDLMRRLVDIQFQRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FR GD +E+FP+ + A R+ FG++++ I E LTG+ +++ I+ Sbjct: 190 DIDFQRGRFRARGDVLEVFPASSDAKALRIEFFGDEVDRIREVDSLTGEVTADLDLATIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I+ EL +L E+EG+LLEAQRL+QR YD+EM+ G Sbjct: 250 PATHFMTNDAIRDRALKTIQAELDAQLKVFEEEGKLLEAQRLKQRTEYDIEMIREMGFTS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGEPP TL ++ P+D L+ VDESHVT+PQ+ GMY+GD RK TL ++ Sbjct: 310 GIENYSRHMDGRAPGEPPFTLLDFFPDDFLIVVDESHVTMPQVRGMYKGDRARKETLIDF 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559 GFRLPS +DNRPLR EE+ I +SATPG +E + + +QIIRPTGL+DP + Sbjct: 370 GFRLPSALDNRPLRLEEFEEHVNQIIYMSATPGDYEEARVSHDDVAQQIIRPTGLLDPEI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + ++V+Y+HS++KTL Sbjct: 430 EVRPVMGQIDDLLGEINERTAKDERVFVTTLTKKMAEDLTDYLEDVGVKVKYLHSDIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLR+ SLIQTIGRAA Sbjct: 490 ERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD IT S+Q A++ET RRR Q+ +N++H+I P ++K++I +I + Sbjct: 550 RNENGHVIMYADNITGSMQAAMEETARRRTIQMSYNQEHDITPHTIKKEIRGLI--AVSH 607 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D TN S +++ +++ +A + +L QM AA L+FEEAA +RD + LK Sbjct: 608 DTTETNESTSFTEVAFKDMARPDQEAMIANLEDQMRAAAKRLDFEEAASLRDAVMELK 665 >gi|229492754|ref|ZP_04386555.1| excinuclease ABC subunit B [Rhodococcus erythropolis SK121] gi|229320413|gb|EEN86233.1| excinuclease ABC subunit B [Rhodococcus erythropolis SK121] Length = 720 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/692 (52%), Positives = 479/692 (69%), Gaps = 33/692 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L K I+ EK +LLG TG+GK+ T A +IE +QRPA+VMA Sbjct: 28 FEVVSPYEPAGDQPAAITELEKRINEGEKDVVLLGATGTGKSATTAWLIEKLQRPALVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY +QL +G V + L LV QY R Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLDVGVEVPRDAFLRLLVDVQYNRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R V+T++I+ Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDIVRQVDTVRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A K I+ EL+ RL ELE +G+LLEAQRL R YDLEM++ G C Sbjct: 267 PATHYVAGPERMERAAKDIEAELEERLAELEGKGKLLEAQRLRMRTQYDLEMIKQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESHVT+PQI MY GD RK L E+ Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE++ T+ +SATPG +EL Q G VEQ+IRPTGL+DP V Sbjct: 387 GFRLPSATDNRPLTWEEFSQRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGLIDPEVI 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A++ R+L+T LTK+M+EDLT+YL E IRVRY+HS++ TL Sbjct: 447 VKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSDIDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AI+ET RRREKQ+ +N+K ++PQ +++KI +++D + E+ Sbjct: 567 NVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILDQV-YEE 625 Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771 A T S+D + +G+ +K L QM Sbjct: 626 AEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKELTDQM 685 Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE A R+RDEI LK +G+D Sbjct: 686 MNAARDLQFELAGRLRDEISDLKKE--LRGMD 715 >gi|73663268|ref|YP_302049.1| excinuclease ABC subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90111054|sp|Q49VV6|UVRB_STAS1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|72495783|dbj|BAE19104.1| excinuclease ABC subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 660 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/655 (52%), Positives = 466/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +++ G++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 6 FKLHSEFEPQGDQPEAIQKIVNGVNEGKRHQTLLGATGTGKTFTMSNVIKQVGKPTLIIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 66 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D IV++SVSCIYG+G+ E Y ++V ++ G +++ ELL LV QY R Sbjct: 126 SATSALFERDDVIVIASVSCIYGLGNPEEYRDLVVSIRAGMEMDRSELLKKLVDVQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ +R + I+ Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVLRERDHFAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + +A++ I+ EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 246 PASHFVTREEKMKSAIQRIENELEERLAELNAENKLLEAQRLEQRTNYDLEMMREMGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 306 GIENYSVHLTLRPMGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +V+QIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPFELEHTDE-MVQQIIRPTGLLDPKIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT YL E I+V Y+HSE+KTLE Sbjct: 425 VRPTENQIDDLLGEIQDRIDRNERVLVTTLTKKMSEDLTIYLKEAGIKVNYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 485 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+Y D IT S++ A+DET RRR Q +N+KHNI P ++ +KI +VI + D Sbjct: 545 NSRGEVIMYGDKITDSMRYALDETERRRTIQEAYNEKHNITPTTINKKIHDVISATVEND 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 605 ETNEQQQTEVPK-KMTKKEREKTIANIEKEMKQAAKDLDFEKATELRDMLFELKA 658 >gi|302528101|ref|ZP_07280443.1| excinuclease ABC, B subunit [Streptomyces sp. AA4] gi|302436996|gb|EFL08812.1| excinuclease ABC, B subunit [Streptomyces sp. AA4] Length = 727 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/690 (52%), Positives = 480/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 36 FEVVSEYQPAGDQPAAIDELERRIRAGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 95 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + FPHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 96 PNKTLAAQLANELRELFPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 155 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV+SVSCIYG+G+ +SY +L++G +VE+ LL +LV QY R Sbjct: 156 SATMNLLSRRDVIVVASVSCIYGLGTPQSYLDRSTKLEVGATVERDVLLRALVDVQYSRN 215 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P++ E++A RV FG++I+++ +PLTG +R V+ ++I+ Sbjct: 216 DIAFARGTFRVRGDTVEIIPAY-EELAIRVEFFGDEIDKLYYLHPLTGDIVREVDEVRIF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I+ EL+ RL ELEK+G+LLEAQRL R YD+EM+ G C Sbjct: 275 PATHYVAGPERMEKAIRGIEAELEERLAELEKQGKLLEAQRLRMRTAYDIEMMRQVGFCS 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED LL +DESH T+PQI GMY GD RK L +Y Sbjct: 335 GIENYSRHIDGRGPGSAPATLIDYFPEDFLLVIDESHQTVPQIGGMYEGDMSRKRNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 395 GFRLPSAVDNRPLTWEEFSDRIGQTVYLSATPGPYEMGQTGGEFVEQVIRPTGLVDPKVV 454 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI A + R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 455 VKPTEGQIDDLVHEIRERADKDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 514 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 515 RVELLRQLRAGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 574 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N++ ++PQ +++KI +++D + E Sbjct: 575 NVSGEVHMYADKITDSMKYAIDETDRRRAKQVAYNEERGLDPQPLRKKIADILDRVYTEA 634 Query: 740 --DAATTNISIDAQQLSLSKKKGKAH------------------------LKSLRKQMHL 773 T + + S KK + ++ + QM Sbjct: 635 EDSDETVAVGGSGRNSSRGKKPEQGDRVRSSGMLTDKNVSAMPRAELADLIQQMTDQMMQ 694 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR+RDE+ LK +G+D Sbjct: 695 AARDLQFELAARLRDEVADLKKE--LRGMD 722 >gi|262067598|ref|ZP_06027210.1| excinuclease ABC subunit B [Fusobacterium periodonticum ATCC 33693] gi|291378713|gb|EFE86231.1| excinuclease ABC subunit B [Fusobacterium periodonticum ATCC 33693] Length = 663 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/651 (52%), Positives = 472/651 (72%), Gaps = 4/651 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ ++Y P GDQP AI ++K I K Q+LLGVTGSGKTFT+A VIE +QRPA++ Sbjct: 4 NLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + +++KEL+ L+ +Y+ Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIQRKELMKKLITLRYE 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R DI RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQKI+ N+E I Sbjct: 184 RNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + ++ IK++L++ + E E +LLEAQRL QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD RK L Sbjct: 303 YCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKEAL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEIEVSDNNIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N +NI+P+S+ ++I E D I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DLIN 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 L+ + +++ SK + + L K++ + L+FE+A +RD Sbjct: 601 LDYGIEDKKFENDKKVFRSKADIEKEISKLEKKIKKLVEELDFEQAIVLRD 651 >gi|289705494|ref|ZP_06501886.1| excinuclease ABC, B subunit [Micrococcus luteus SK58] gi|289557723|gb|EFD51022.1| excinuclease ABC, B subunit [Micrococcus luteus SK58] Length = 709 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/688 (51%), Positives = 475/688 (69%), Gaps = 36/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + + + EK +L+G TG+GK+ T A ++E +QRP +VM Sbjct: 14 FEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G +++ LL V+ QY R Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTGQ +R E + I+ Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL ELE + +LLEAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P L +Y P+D LL VDESHVTIPQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG++EL Q G VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ ++I + + R+L+T LTKRMAEDLT+YL E ++V Y+HS+V TL Sbjct: 432 VKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T S++ AI+ET RRR Q+ +N++H I+PQ ++++I ++ D + ED Sbjct: 552 NVSGEVHMYADNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARED 611 Query: 741 AATTNI---------------------SID-------------AQQLSLSKKKGKAHLKS 766 A T + S+D SL K ++ Sbjct: 612 ADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAEAPAVDPASLPAKDLADLIEQ 671 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +QMH AA +L FE AAR+RDE+ LK Sbjct: 672 MSQQMHQAAADLQFELAARLRDEVGELK 699 >gi|188996747|ref|YP_001930998.1| excinuclease ABC, B subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931814|gb|ACD66444.1| excinuclease ABC, B subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 663 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/654 (52%), Positives = 467/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++++ P+GDQP AI QL + + S Q+LLG TG+GKTFT+A +IE RP ++++ Sbjct: 6 FNLKSNFKPTGDQPKAIKQLYENLISGVNQQVLLGATGTGKTFTIANLIEKYGRPTLILS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+RH Sbjct: 66 HNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDAIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G ++++ LL LV+ QY+R Sbjct: 126 SATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQRD 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTF+V GD++EI P++ ED+ RV FG++IE ISE R ++ I+ Sbjct: 186 DFSLKRGTFKVKGDTVEILPAYTEDIIVRVEFFGDEIESISEIDIFNRDVKRKLDRTVIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV PRP + A+K I+++L++ + E + G+ +EA RL QR YD+EM+ G+C+ Sbjct: 246 PASHYVIPRPDMLEAIKQIQKDLEIEVEEFRRAGKEIEANRLWQRTNYDIEMMLELGTCK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y PED LL VDESHVTIPQI MY GDF RK L +Y Sbjct: 306 GIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIVDESHVTIPQIKAMYNGDFSRKENLVKY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+R+ S DNRPL+FEE+ I VSATP WE+++ +G+IVEQIIRPTGL+DP +E Sbjct: 366 GWRMKSAYDNRPLKFEEFVQKIQKAIYVSATPADWEIKRSKGVIVEQIIRPTGLLDPVIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +EI ++ R+++ LTK+MAE L +YL ER I+ Y+HSE+ T+E Sbjct: 426 VKKTEGQIDDLINEIWKVKERDERVIVITLTKKMAEHLADYLTEREIKAIYLHSEIDTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II++ R GK+DV+VG+NLLREGLD+PE LVA+LDADK+GFLRSKT+LIQTIGRAAR Sbjct: 486 RVKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAVLDADKQGFLRSKTALIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD +T ++ I+ET RRR+ Q E+NKKH I P+++ + EV D I LE+ Sbjct: 546 NVNGKAILYADKLTPAMIETIEETNRRRKIQEEYNKKHGIIPKTISK---EVKDLISLEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I S++ ++ L KQM A N FE+AA IRD++++LK Sbjct: 603 LGILEIYNQLPDDINSEEDLMKKIEQLEKQMWDYAKNWEFEKAAEIRDQLEKLK 656 >gi|150019672|ref|YP_001311926.1| excinuclease ABC subunit B [Clostridium beijerinckii NCIMB 8052] gi|189037959|sp|A6M2Z0|UVRB_CLOB8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|149906137|gb|ABR36970.1| excinuclease ABC, B subunit [Clostridium beijerinckii NCIMB 8052] Length = 657 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 470/656 (71%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+ + P+GDQP AI +L+ I S + Q LLGVTGSGKTFTMA VIE +QRP I++A Sbjct: 4 FKIQSRFKPTGDQPQAIDKLVNSIKSNNRAQTLLGVTGSGKTFTMANVIEKLQRPTIILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G E+ E++ L++ QY+R Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRTGMEKERDEVIKKLIEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS++I P+ + R+ FG++I+ I EF LTG + + I Sbjct: 184 DIDFSRGTFRVRGDSLDIIPASYSNKGIRIEFFGDEIDRIREFDVLTGSILGERNHVAIT 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T R T++ A+ I+ EL+ RL EL + +LLEAQRL QR +D+EM++ G C Sbjct: 244 PASHFATSRETVDKAIGIIEGELEERLRELNAQDKLLEAQRLRQRTNFDIEMIKEMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y PED L+F+DESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GIENYSRILDGRASGTPPKTLIDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ + VSATP ++E++ + I EQIIRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVVFVSATPSAYEIDNSEE-IAEQIIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+Y EIN + G RIL+T LTKRM+EDLT+YL E ++ YMHS++ T+E Sbjct: 423 IRPIKGQIDDLYGEINKTIECGFRILITTLTKRMSEDLTKYLIELGVKTTYMHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG++DVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+YAD ITKS+ A+ ET RRR Q ++N++H I P ++ + + ++I+ + + Sbjct: 543 NSESKVIMYADNITKSMDKAMKETERRRAIQKDYNERHGIVPTTIIKDVRDIIEATKVAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + A + L+KK+ +K L ++M LAA NL FE AA +RD I +K Sbjct: 603 EVEEYKA--ADKKKLTKKEKDKLIKDLTEEMLLAAKNLQFERAAELRDIINEIKDG 656 >gi|308234505|ref|ZP_07665242.1| excinuclease ABC, B subunit [Atopobium vaginae DSM 15829] Length = 742 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 472/697 (67%), Gaps = 36/697 (5%) Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEA 191 HSK FQ+ D+ P GDQP AI L KG+ + + Q LLGVTGSGKTFTMA +IE Sbjct: 15 GHSKQQQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQ 74 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 Q+ +++ PNK LAAQ+ SE K FPHNAV YFVSYYDYYQPEAY+P+TDTYIEK+SSI Sbjct: 75 TQKTTLIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSI 134 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 NE+++++RH T SLL R D IVV+SVSCIYGIGS + Y+ + + +E+ + + S Sbjct: 135 NEEVEKLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRS 194 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 L+ QY R D+ +IRGTFRV GD +++F + E RVS FG++IE I+EF +TG + Sbjct: 195 LIDIQYDRNDVDLIRGTFRVRGDCVDVFTPYGEH-PIRVSFFGDEIEMIAEFDEVTGDTL 253 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + + I+ +HYV+ RP +N A+ I++EL+ R+ EL+ LLEAQRL+QR +YDLE Sbjct: 254 SQYDALPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLE 313 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 MLET G C IENYSR+L GR PGE P TL +Y PED L +DESHV++PQI GMY GD Sbjct: 314 MLETMGFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDR 373 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK TL ++GFRLP +DNRPLR++E+ P + VSATPG +EL Q + VEQ+IRP Sbjct: 374 SRKITLVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQNV-VEQVIRP 432 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP VEIR R Q++D+ DEI + R+L+T LTK MAEDLTE+L + +V Y Sbjct: 433 TGLLDPRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNY 492 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MHS+ TL+RI+IIR LR G DVLVGINLLREGLDIPE LVAILDADKEGFLR+K SL Sbjct: 493 MHSDTATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSL 552 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQT+GRAARN VI+YAD +T S+Q+A+DET RRR Q+ +N +H+I PQ++K+ +++ Sbjct: 553 IQTMGRAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVD 612 Query: 732 VI----------------DPILLEDAATTNISIDAQQLSLSKKKGKAH------------ 763 V D + + T + + + Q S S + A Sbjct: 613 VTSFIQAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKE 672 Query: 764 -----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L +L+ +M A+ +++FE AA++RD+I ++S Sbjct: 673 DVAKILGALQDEMLAASASMDFERAAKLRDQIVEVQS 709 >gi|320531289|ref|ZP_08032265.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 171 str. F0337] gi|320136492|gb|EFW28464.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 171 str. F0337] Length = 698 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/677 (52%), Positives = 480/677 (70%), Gaps = 25/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQPAAIA+L + + + EK +LLG TG+GK+ T A ++E +QRP +++ Sbjct: 14 FEVVSPYSPSGDQPAAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y + L++G +++ +LL V QY R Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDLLRRFVTMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++IE ++ +P+TG I V + ++ Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTVGQVFVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+ EL RL +LE +GRLLEAQRL R TYDLEML+ G C Sbjct: 253 PASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G PP TL +Y PED LL +DESHVT+PQI M+ GD RK TL ++ Sbjct: 313 GIENYSLHIDGREVGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ T+ +SATPG +E ++ G+ VEQIIRPTGLVDP V Sbjct: 373 GFRLPSALDNRPLTFAEFEDRIGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ QV+D+ +E+ ++ RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL Sbjct: 432 VKPTEGQVDDLLEEVRTRVERQERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 492 RVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT ++ AI+ET RRR KQL +N +H I+PQ +++KI +V D + ED Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNTEHGIDPQPLRKKIADVTDMLARED 611 Query: 741 AATTNI-----------SIDAQQLSLSKK------KGKAH------LKSLRKQMHLAADN 777 T ++ SI A++ ++ G A + L +QMH AA++ Sbjct: 612 VDTADLLAGGYRGHEDSSIRARRKHAAEATVRERLAGAAQGDLVELINELTQQMHAAAED 671 Query: 778 LNFEEAARIRDEIKRLK 794 L+FE AAR+RDEI+ LK Sbjct: 672 LHFELAARLRDEIQDLK 688 >gi|224369427|ref|YP_002603591.1| UvrB1 [Desulfobacterium autotrophicum HRM2] gi|223692144|gb|ACN15427.1| UvrB1 [Desulfobacterium autotrophicum HRM2] Length = 663 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/665 (52%), Positives = 471/665 (70%), Gaps = 17/665 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F +++ + P+GDQP+AI L KGI ++K Q+LLGVTGSGKTFTMA +I RPA+ Sbjct: 1 MTQFNIKSPFQPTGDQPSAIDFLSKGIFEKKKHQVLLGVTGSGKTFTMANIIARTGRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+APNK LAAQLY+EFK FP NAVEYFVSYYDYYQPEAY+P +DTYI+K+SSINE ID+ Sbjct: 61 VIAPNKTLAAQLYNEFKTLFPENAVEYFVSYYDYYQPEAYIPTSDTYIQKDSSINEMIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK--ELLSSLVKQ 315 MRHSATRS+L R D IVV+SVSCIYG+G+ E Y + ++++I + +E+ +LL+ LV Sbjct: 121 MRHSATRSVLARKDVIVVASVSCIYGLGAPEDY--LALRVEINEEMEKSRDKLLAELVNI 178 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY+R D+ RGTFRV GD +E+FP++ D A R+ FG+ I+ + E PL G + ++ Sbjct: 179 QYQRNDVDFHRGTFRVRGDRVEVFPAYETDKALRIDFFGDTIDGVFEVDPLKGDVLNRIK 238 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 ++ SHYVT T A++ IK ELK+R+ E RL+EAQR+E+R YDLEM+ Sbjct: 239 GTAVFPASHYVTLNQTRQRAVETIKAELKVRIDFFRNENRLIEAQRIEERTQYDLEMINE 298 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENYSR+LTGR GEPPPTL +Y PED L F DESH+++ Q+ MY+ D RK Sbjct: 299 IGYCNGIENYSRHLTGRAQGEPPPTLIDYFPEDFLCFFDESHISVSQVGAMYKADRSRKE 358 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +GFRLPS +DNRPL+F+E+ P I VSATP +EL + EQI+RPTGL+ Sbjct: 359 NLVGHGFRLPSALDNRPLKFDEFKKKIPQAIYVSATPADYELSLAGTRVAEQIVRPTGLL 418 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP +E+R A TQV+D+Y+EI + R+L+T LTKRM+EDLT+Y + I+V+Y+HS+ Sbjct: 419 DPAIEVRKATTQVDDLYEEIVKRVEAEERVLVTTLTKRMSEDLTDYFSDFGIKVKYLHSD 478 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + T+ERI+II+DLR G FDVL+GINLLREGLDIPE LVA+LDADKEGFLRS SL+QT Sbjct: 479 IGTVERIDIIQDLRKGVFDVLIGINLLREGLDIPEVTLVAVLDADKEGFLRSYRSLVQTF 538 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN KVI+YAD IT S++ A+DET RRR Q ++N+ HNI P ++ ++I ++ D Sbjct: 539 GRAARNACGKVIMYADRITPSMKKAMDETDRRRIIQKQYNQDHNIVPTTIIKEI-KMFDY 597 Query: 736 ILLEDAATTNISI-------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + +D A + + DA +L++ + +L+ +M AA + FE AA +RD Sbjct: 598 TMEKDLADLSPGVGESTTVYDADTDNLAEI-----IANLKVEMKQAARKMEFETAATLRD 652 Query: 789 EIKRL 793 I+ L Sbjct: 653 RIREL 657 >gi|311113506|ref|YP_003984728.1| excision endonuclease subunit UvrB [Rothia dentocariosa ATCC 17931] gi|310945000|gb|ADP41294.1| excision endonuclease subunit UvrB [Rothia dentocariosa ATCC 17931] Length = 722 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/703 (50%), Positives = 480/703 (68%), Gaps = 55/703 (7%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L + + + EK +L+G TG+GK+ T A ++E++QRP +VM Sbjct: 14 FEVVSPYQPAGDQPKAIVELTERVENGEKDIVLMGATGTGKSATAAWLVESVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVS+VSCIYG+G+ E Y + +V L+ GD +++ +LL V QY R Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLERGDEIDRDDLLRQFVNMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A R+ FG++IE I +PLTG+ IR + + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EEHAIRIEFFGDEIEAIYTLHPLTGEVIREEDEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL LE +G+LLEAQRL R TYDLEM+E G Sbjct: 253 PASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFTS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR+ G P L +Y P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ TI +SATPG +EL Q G VEQIIRPTGLVDP + Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLVDPEII 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ ++I ++ R+L+T LTKRMAEDLTEYL + +RV+Y+HS+V TL+ Sbjct: 432 VKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRVQYLHSDVDTLK 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADT+T S++ AIDET RRRE Q +N++H I+PQ +++KI ++ D + E+ Sbjct: 552 NVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKIADITDVLAREE 611 Query: 741 AATTNISIDAQQLSLSKKKG------------------------------KAH------- 763 T + QL S KKG KA Sbjct: 612 EDTHEL----LQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQDRVRADG 667 Query: 764 ------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +QM LAA+NL FE AAR+RDE+ LK Sbjct: 668 LAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLK 710 >gi|256820270|ref|YP_003141549.1| excinuclease ABC subunit B [Capnocytophaga ochracea DSM 7271] gi|256581853|gb|ACU92988.1| excinuclease ABC, B subunit [Capnocytophaga ochracea DSM 7271] Length = 665 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/665 (52%), Positives = 469/665 (70%), Gaps = 17/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI QL+KGI +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A Sbjct: 3 FNIVSDFAPTGDQPQAIDQLVKGIERNDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPSTGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D +VV+SVSC+YGIG+ + + ++ LK GD + + +L+ LV+ Y R Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITLKQGDVLPRTKLMHRLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FR+ GD +++FP + +D A+R+ FG++IEEI +F P T + + +++ I Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHVLDHYQSLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ E G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLVKQVEFFEALGKPLEAKRLKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL+Q QG+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ RIL+T LTKRMAE+LT+YL IR RY+HS+V TL Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN K I+YAD IT S+Q ID+T RREKQ+ +NK HNI PQ + +KI + Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPIT 601 Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 DP E A +AQ + LS K+ + +K RK M +AA L+F +AA+ RDE Sbjct: 602 EFHYDPSFKERTAA-----EAQSVYLSAKELEKKIKETRKLMEVAAKELDFVKAAQYRDE 656 Query: 790 IKRLK 794 +K+L+ Sbjct: 657 LKKLQ 661 >gi|229822874|ref|ZP_04448944.1| hypothetical protein GCWU000282_00164 [Catonella morbi ATCC 51271] gi|229787687|gb|EEP23801.1| hypothetical protein GCWU000282_00164 [Catonella morbi ATCC 51271] Length = 660 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/656 (53%), Positives = 466/656 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y PSGDQP AI L++G++ K Q+LLG TG+GKTFT+A VI+ RP +V+A Sbjct: 3 FQLVAPYSPSGDQPEAIEALVQGVNDGVKEQVLLGATGTGKTFTIANVIKQTGRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 63 HNKTLAGQLYSELLEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA+ +L+ER D IVV+SVSCIYG+ E+Y ++ L+ G + + LL+ LV+ Q+ R Sbjct: 123 SASSALIERRDVIVVASVSCIYGLVDPENYRNHVLSLREGMEIPRNVLLARLVEMQFVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIF + + RV FG++IE I LTG+ +V+ I+ Sbjct: 183 DIDFQRGTFRVRGDVVEIFMASRDKEVVRVEFFGDEIERIRVVDFLTGEIKYDVDHYPIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V + A++ I++EL+ RL EL + +LLEAQRLEQR TYDLEM+ G C Sbjct: 243 PATHFVASQEQTAVAVESIRQELEERLAELRADNKLLEAQRLEQRTTYDLEMMLEMGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG+ P TL ++ P+D L+ VDESH+T+ QI GMY GD RK L +Y Sbjct: 303 GIENYSRHIDGRAPGQAPYTLLDFFPDDFLIVVDESHITMSQIRGMYNGDRGRKQQLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +ELE G +++QIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLRLEEFEEHVNQIIYVSATPGPYELEHTGGEVIQQIIRPTGLLDPVVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+ +T LTK+MAEDLT+YL E +I+V+Y+HS++KTLE Sbjct: 423 VRPIEGQIDDLVAEIKARTERDERVFITTLTKKMAEDLTDYLKELDIKVKYLHSDIKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 483 RTEIIRDLRLGVFDVLVGINLLREGLDVPEVTLVAILDADKEGFLRSERSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S+Q AI+ET RRR Q+ +N++H I P+++K++I ++I + Sbjct: 543 NANGRVIMYADQITASMQYAIEETERRRSIQMAYNQEHGIVPKTIKKEIRDLIRITHDVE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 S+ Q LS+ + + L+ L +M AA +LNFE AA +RD I LK + Sbjct: 603 NEDKQESLLKQFRKLSRLQREEQLERLEMEMRQAAKDLNFEAAADLRDMIMELKGA 658 >gi|123967072|ref|YP_001012153.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9515] gi|123201438|gb|ABM73046.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT 9515] Length = 679 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/670 (51%), Positives = 469/670 (70%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI +L++G++S ++ Q LLG TG+GKTFT+A VI+ RPA+++A Sbjct: 4 YKLQAPYEPNGDQPKAIKKLVQGVNSGKEFQTLLGATGTGKTFTIANVIQQTGRPALILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELRQFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ +G+S++ + L +LV QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFAVGESIDLRSSLRALVDNQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ I RG FR+ GD +EI P++ ED R+ +FG++IE I PLTG+ + +++ + +Y Sbjct: 184 DVEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEIEAIRFVDPLTGEILESLDQVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A+ I+ ELK +L + EG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKERLEAAITAIRNELKEQLDKFACEGKLLEAQRLEQRTKYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPTDWLLVVDESHVTCPQLHAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC+G +EQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCEGQFIEQVIRPTGVLDPIID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + A++ R+L+T LTKRMAEDLT++L + +RVRY+HSE+ ++E Sbjct: 423 VRPSDGQIDDLLSEIRVRAKKNQRVLVTTLTKRMAEDLTDFLSDNKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V +LYAD T+S++ AIDET RRR Q ++N+ + I PQ +KI I L Sbjct: 543 HVEGVALLYADNFTQSMKRAIDETDRRRTIQKKYNQINGITPQPAGKKIENSILSFLELS 602 Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKAHLK-------SLRKQMHLAADNLNFEEAA 784 LE + N+ + L+ K + L+ L +M AA LNFEEAA Sbjct: 603 RKLETGGFSKDLINVVSNKTDEILNAKDNQCLLEEMPNLIDKLENKMKEAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKKLR 672 >gi|307244693|ref|ZP_07526796.1| excinuclease ABC, B subunit [Peptostreptococcus stomatis DSM 17678] gi|306491944|gb|EFM63994.1| excinuclease ABC, B subunit [Peptostreptococcus stomatis DSM 17678] Length = 657 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/650 (52%), Positives = 470/650 (72%), Gaps = 2/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI ++ + I K Q L+GVTGSGKTF MA +I+ +++P +V+A Sbjct: 3 FKLVSDYVPTGDQPEAIDRISQSIEEGNKYQTLVGVTGSGKTFAMANIIQRVKKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV +DTYIEK++SIN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++LER+D I++SSVSCIYG+G + Y ++++ L+ G ++ +++ LV+ QY+R Sbjct: 123 SATAAILERDDTIIISSVSCIYGLGDPKDYKELMLSLRPGMVRDRDDIIKRLVEIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IRGTFRV GD +EIFP+ ++ A R+ FG++I+ I+E +TG+ + + I+ Sbjct: 183 DVNFIRGTFRVRGDILEIFPASNDEKAIRIEFFGDEIDRITEIDYVTGKVVGQRNHVVIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + A+ I+EEL + + + +LLEAQR+EQR YD+EML G CQ Sbjct: 243 PASHYVTTPERIERAIGTIEEELDQAIADFKSRDKLLEAQRIEQRTKYDIEMLREIGFCQ 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TGR+ GE P TL ++ P+D L+ VDESHVTIPQ+ GMY GD RK +L E Sbjct: 303 GIENYSRHITGRSKGEKPYTLMDFFPDDYLIIVDESHVTIPQVRGMYAGDRSRKKSLIEN 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRL S DNRPL FEE+ + +ATPG +E+E + + EQIIRPTGL+DP V Sbjct: 363 GFRLESAYDNRPLNFEEFESNIHQVLFTTATPGPYEMEHTE-VFAEQIIRPTGLLDPTVS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN +G R+L+T LTK+M+EDLT+YL E I+V+YMHS++ TLE Sbjct: 422 VRPVENQIDDLIVEINRNVDKGERVLITTLTKKMSEDLTKYLLESGIKVKYMHSDIVTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TS+IQTIGRAAR Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSMIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD +T S+Q AI ET RRR Q+ +N+K+ I P+++++ + + I+ + + Sbjct: 542 NSNGRVIMYADRVTDSMQRAISETERRRAIQMAYNEKYGIVPKTIQKGVRDSIEATRIAE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + D + L + +A + ++ +M AA+NL FE+AA +RD+I Sbjct: 602 EVESYDVNDIRALKDEAQISQA-IIVMKSEMMAAAENLEFEKAAELRDKI 650 >gi|257784749|ref|YP_003179966.1| excinuclease ABC, B subunit [Atopobium parvulum DSM 20469] gi|257473256|gb|ACV51375.1| excinuclease ABC, B subunit [Atopobium parvulum DSM 20469] Length = 746 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/688 (51%), Positives = 471/688 (68%), Gaps = 38/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 Q+ + + P+GDQP AI +L +GI + Q LLGVTGSGKTF+MAK IE + RP ++M Sbjct: 30 LQVVSPFEPAGDQPQAIEKLAQGIEDGLRYQTLLGVTGSGKTFSMAKTIEKLNRPTLIME 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ SE K FP+NAV YFVSYYDYYQPEAYVP++DTYIEK++SINE+++++RH Sbjct: 90 PNKTLAAQVASEMKELFPNNAVVYFVSYYDYYQPEAYVPQSDTYIEKDASINEEVEKLRH 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D IVV+SVSCIYGIGS + Y+ + + +E+ + + L+ QY R Sbjct: 150 QATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDFIKDLINVQYDRN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FRV GD +++FP + E+ R+ FG+++E ISE +TG+ +R + I I+ Sbjct: 210 DYDLQRGMFRVRGDVVDVFPPYAEN-PLRIEFFGDEVESISEVSTVTGEVLREFDAIPIW 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT RP + A+ I EE++ R+ EL++ +LLEAQRL QR YDLEMLET G C Sbjct: 269 PASHYVTERPKITHALTTISEEMEARVKELKENDKLLEAQRLAQRTNYDLEMLETMGYCN 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D + +DESHVT+PQI GMY GD RK TL ++ Sbjct: 329 GIENYSRHLDGRAPGEPPYTLIDYFPKDMICIIDESHVTVPQIRGMYEGDRSRKVTLVDH 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ P I VSATPG +E E VEQIIRPTGL+DP ++ Sbjct: 389 GFRLPSALDNRPLRFDEFEGRIPQFIYVSATPGDYE-ETVAQQQVEQIIRPTGLLDPKID 447 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ E+ + R+L+T LTKRMAEDLT++L + I+V YMHS+ TL+ Sbjct: 448 VRPVRGQIDDLISEVKERVAKKERVLVTTLTKRMAEDLTDHLLDEGIKVNYMHSDTATLD 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GK DVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQT+GRAAR Sbjct: 508 RVEIIRDLRQGKIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAAR 567 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S+++AIDET RRRE Q NK+H I P++VK+ I ++ I Sbjct: 568 NASGQVIMYADKITDSMRIAIDETKRRRELQEAFNKEHGIVPKTVKKSITDIAGFIA--- 624 Query: 741 AATTNI------------------SIDAQQLS---------------LSKKKGKAHLKSL 767 A+ NI S++ QQ S L + + +A L + Sbjct: 625 EASENIDKRKRKNGEFYTASNDEDSLEEQQESILEMPAELLTEELQNLPRSEVEAMLSGM 684 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795 +M A+ ++++E AA +RD+I ++S Sbjct: 685 EAEMAEASASMDYEHAAELRDQIVAIRS 712 >gi|302336092|ref|YP_003801299.1| Excinuclease ABC subunit B [Olsenella uli DSM 7084] gi|301319932|gb|ADK68419.1| Excinuclease ABC subunit B [Olsenella uli DSM 7084] Length = 771 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/683 (52%), Positives = 471/683 (68%), Gaps = 32/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ + Y P+GDQP AIA+L +GI + Q LLGVTGSGKTF+MAK IEA QRP ++M Sbjct: 59 LEVVSPYEPAGDQPKAIARLARGIEDGLRYQTLLGVTGSGKTFSMAKTIEATQRPTLIME 118 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ SE K FPHNAV YFVSYYDYYQPEAYVP+TDTYIEK++SINE+++++RH Sbjct: 119 PNKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQTDTYIEKDASINEEVEKLRH 178 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D IVV+SVSCIYGIGS + Y+ + + +E+ +L+ L+ QY R Sbjct: 179 QATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDLIRELIDIQYDRN 238 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD+I++FP + E+ RVS FG+++E I+E +TG+ +R + I I+ Sbjct: 239 DYDLSRGTFRVRGDTIDVFPPYAEN-PLRVSFFGDEVELIAEIDNVTGEIVREFDAIPIW 297 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT RP + A+K I EEL+ R+ EL+ LLEAQRL QR YDLEMLET G C Sbjct: 298 PASHYVTERPKITHAIKTISEELEGRVKELKDNDMLLEAQRLSQRTGYDLEMLETMGYCS 357 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL +Y P+D L +DESHVT+PQI GMY GD RK TL E+ Sbjct: 358 GIENYSRHMDGRKAGEPPYTLIDYFPKDMLCIIDESHVTVPQIRGMYEGDRSRKVTLVEH 417 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ + VSATPG +E E VEQ+IRPTGL+DP VE Sbjct: 418 GFRLPSALDNRPLRFDEFEQRIGQFVYVSATPGDYE-EGVSQQEVEQVIRPTGLLDPKVE 476 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ +EI + R+L+T LTKRMAEDLT++L + ++V YMHS+ TL+ Sbjct: 477 VRPVRGQIDDLIEEIKDRTSRKERVLVTTLTKRMAEDLTDHLLDEGVKVNYMHSDTATLD 536 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR+GK VLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQT+GRAAR Sbjct: 537 RVEIIRDLRIGKISVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAAR 596 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YADT+T S++ A+ ET RRR Q +N +H I P+++++ I +V +ED Sbjct: 597 NAQGEVIMYADTVTDSMREAMGETARRRSIQEAYNSEHGIVPKTIRKSITDVAS--FIED 654 Query: 741 AATT---------------------------NISIDAQQL-SLSKKKGKAHLKSLRKQMH 772 A T I A++L +L ++ + +L +M Sbjct: 655 ADKTLSTKSREGGEFFTAPAGEGPTGTEHERTIDSVARELAALPPEEAGKVMGALEDEMV 714 Query: 773 LAADNLNFEEAARIRDEIKRLKS 795 A+ +++FE AA++RD+I L+ Sbjct: 715 QASVDMDFERAAQLRDQIVELRG 737 >gi|282891380|ref|ZP_06299881.1| hypothetical protein pah_c052o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498732|gb|EFB41050.1| hypothetical protein pah_c052o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 669 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 463/655 (70%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++ + P GDQP AI ++++GI +K Q+LLG+TGSGKT+TMA V+ +QRP +V+A Sbjct: 5 FQLESHFPPGGDQPQAIEKIVQGITEGKKSQVLLGITGSGKTYTMANVVAQVQRPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFPHNA+EYFVSYYDYYQPEAY+ RTDTYIEK+ +IN++ID+MR Sbjct: 65 HNKTLAAQLYQEFKSFFPHNAIEYFVSYYDYYQPEAYIARTDTYIEKDMAINDRIDKMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D ++V+SVSCIYG+G+ E Y M + L G + + ++L LV+ QY R Sbjct: 125 SATRSLLERRDVLIVASVSCIYGLGTPEYYRGMNLTLATGQNRRRDDILLHLVEMQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TFRV GD +EIFP++ ED++ RV FG+DIE ISE PLTG+ + ++ I IY Sbjct: 185 DYDFSRATFRVRGDVLEIFPAYEEDLSIRVEFFGDDIERISEIDPLTGKVRQRIQQITIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SH+VTP A++ IK EL R+ EK L+E QR++QR +D+EM+ G C+ Sbjct: 245 PSSHHVTPEEVRWHALETIKAELAERMEFFEKNNLLIERQRIQQRTQHDMEMIREIGFCK 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ + R PG+PPP L +Y P D LL +DESH T+PQ+ MY GD RKA L ++ Sbjct: 305 GIENYSRHFSQRQPGDPPPCLIDYFPSDFLLIIDESHQTLPQMRAMYNGDKARKAALVDF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE + VSATP WE+ + +G IVEQ+IRPTGL+DP +E Sbjct: 365 GFRLPSAYDNRPLKFEESYSHFHQVVYVSATPAEWEVAEAEGEIVEQVIRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D EI ++G R+L+T LTKR+AE+LT YL E +++ +Y+HS++ TLE Sbjct: 425 VRPADGQVDDSLAEIRTHVEKGGRVLVTTLTKRLAEELTTYLTELDVKAKYLHSDIDTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +II+DLR G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT GRAAR Sbjct: 485 RSQIIQDLRAGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739 N +VI+YA+ ITK+I+ +D T RR Q E+N +H I P++VK +I +++P I+ E Sbjct: 545 NSEGRVIMYANKITKAIRHTLDITESRRVMQHEYNLEHGITPRTVKREISPLVEPDIIYE 604 Query: 740 DAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 D + + L+ + + ++ M AA + FE+AA RD +K Sbjct: 605 DQTEVKAHLKVAEGHHDYLTLDEIRLKVRENENLMKKAAKEMQFEDAAHFRDLMK 659 >gi|227874334|ref|ZP_03992519.1| excision endonuclease subunit UvrB [Oribacterium sinus F0268] gi|227839822|gb|EEJ50267.1| excision endonuclease subunit UvrB [Oribacterium sinus F0268] Length = 667 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 463/658 (70%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQPAAI +L+KG+ + + LLGVTGSGKTFTMA VI+ +Q+P ++++ Sbjct: 10 FKLHSDYAPMGDQPAAIEKLVKGLQEGNQFETLLGVTGSGKTFTMANVIQQIQKPTLIIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S INE+ID++R+ Sbjct: 70 HNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSDINEEIDKLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L ER D +VV+SVSCIYG+G+ Y M + L+ G ++ EL+ +LV+ QY R Sbjct: 130 SAMAALSERKDVVVVASVSCIYGLGAPTEYLNMAISLRPGQIRDRDELIKNLVEIQYNRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++IFP+ + A+R+ FG++IEEI LTG+ +E ++ Sbjct: 190 DMDFRRGTFRVKGDIVDIFPASEGEQAYRIQFFGDEIEEIQLIDALTGKGKAKLEHCMVF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + YV P + A K I EEL R+ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 250 PATPYVIPMEKMKIACKNILEELDERVAYFKSEEKLLEAQRISERTNFDVEMIRETGVCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L PGEPP TL +Y PED L+ VDESH+++PQI GMY G+ RK TL ++ Sbjct: 310 GIENYTRHLNFAQPGEPPYTLMDYFPEDYLIIVDESHISLPQIRGMYNGNLSRKTTLVDF 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATPG +E E + + EQIIRPTGL+DP + Sbjct: 370 GFRLPSALDNRPLNFSEFEGKINQMLFVSATPGEYEAEH-EILRAEQIIRPTGLLDPEIV 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI+ +G +IL+T LTK+MAEDLT+YL E +RV+Y+HS++ TLE Sbjct: 429 VRPTKGQIDDLLSEIHKETDKGNKILVTTLTKKMAEDLTKYLQEAKVRVKYLHSDIDTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRD+RL KFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQ +GRAAR Sbjct: 489 RAAIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQIVGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV--IDPILL 738 N VI+YADTIT S++ IDET RRR Q E+NK H I P ++K+ + ++ I +L Sbjct: 549 NSEGHVIMYADTITDSMRRTIDETKRRRSIQEEYNKAHGITPTTIKKAVRDLIAISKVLR 608 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +D ++ S+SK + + ++ K+M AA LNFE+AA RD+I+ L+ S Sbjct: 609 DDEKGFQKDVE----SMSKAEIEKMIREFSKKMRAAAAELNFEDAALYRDKIQELRDS 662 >gi|260578003|ref|ZP_05845926.1| excinuclease ABC, subunit B [Corynebacterium jeikeium ATCC 43734] gi|258603830|gb|EEW17084.1| excinuclease ABC, subunit B [Corynebacterium jeikeium ATCC 43734] Length = 707 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/678 (52%), Positives = 476/678 (70%), Gaps = 25/678 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISDYKPAGDQPKAIEELHQRLDRGERDVVLMGATGTGKSATAAWLIEKEQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V LK+ + VE+ L LV QY R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVDEEVERDRFLRLLVDIQYSRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+++I P++ E++A RV FG+DI+ + +PLTG IR V+ ++I+ Sbjct: 208 DVAFTRGTFRVKGDTVDIIPAY-EELAVRVEFFGDDIDALYYIHPLTGDVIRQVDELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + AM+ IKEEL RL ELE G+LLEAQRL R YDLEM++ G Sbjct: 267 PATHYVAGPERMEKAMQAIKEELAQRLEELENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRAAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ + + +SATPG +E+ QG VEQ+IRPTGLVDP VE Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEYVEQVIRPTGLVDPKVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ ++I ++ R+L+T LTKRMAEDLT+YL E ++VRYMHS++ TL+ Sbjct: 447 VRPTEGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 NV+ +VI+YAD +T S+Q AIDET RRR KQ+ +N++H I+PQ +++KI +++D + LE Sbjct: 567 NVSGEVIMYADKVTDSMQYAIDETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVAELE 626 Query: 740 DAATTNISIDAQQLSLSKKKGKAH-----------------------LKSLRKQMHLAAD 776 + + + + S + +G++ ++ + +QM AA Sbjct: 627 AESGVDAAGGSGAESSAGGRGESPEADWALVRGSSDEPMARPQLEKLIQEMTEQMKSAAK 686 Query: 777 NLNFEEAARIRDEIKRLK 794 L FE A R+RDEI LK Sbjct: 687 ELKFELAGRLRDEIADLK 704 >gi|225568545|ref|ZP_03777570.1| hypothetical protein CLOHYLEM_04622 [Clostridium hylemonae DSM 15053] gi|225162773|gb|EEG75392.1| hypothetical protein CLOHYLEM_04622 [Clostridium hylemonae DSM 15053] Length = 660 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/654 (51%), Positives = 469/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI L+KG + Q LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FNLVSEYSPTGDQPQAIEALVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++++SVSCIYG+GS Y +M++ L+ G ++ +++ L+ QY R Sbjct: 124 SATAALSERRDVVIIASVSCIYGLGSPIDYQEMVISLRPGMIKDRDDIIRKLIDIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +E+ P+ + R+ FG+++E I+E LTG+ + I I+ Sbjct: 184 EMDFKRGTFRVRGDVLEVIPAMNDCDVIRIEFFGDEVERITEVDALTGEIKNELNHIAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + ++ A+K I+ EL+ ++ + +G+LLEAQR+ +R +D+EM+ TG C Sbjct: 244 PASHYVVSKESMERAVKEIEVELEEQIQYFKSKGKLLEAQRISERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD RK+TL +Y Sbjct: 304 GIENYSRHLTGLAPGQPPHTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKSTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E + + EQ+IRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLSFEEFEGKLNQVMFVSATPGRYEAEH-ELLRAEQVIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + +IL+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLVGEVNREVAKKNKILITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++LA++ET RRR+ Q+++N++H I PQ++++ + ++I + + Sbjct: 543 NSEGHVIMYADKVTDSMRLALEETKRRRQIQMKYNEEHGITPQTIQKAVRDLIS--ISKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 AT + ++ S+S+K+ +K + K+M AA LNFE AA +RD++ LK Sbjct: 601 VATEEMRLEKDPESMSRKELDKLIKEVTKRMKTAAAELNFEAAAELRDKLVELK 654 >gi|194015177|ref|ZP_03053793.1| excinuclease ABC, B subunit [Bacillus pumilus ATCC 7061] gi|194012581|gb|EDW22147.1| excinuclease ABC, B subunit [Bacillus pumilus ATCC 7061] Length = 661 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/656 (53%), Positives = 477/656 (72%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L++GIH ++ Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+ +E+ +LL LV QY R Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ ++ RV FG++IE I E LTG+ + + E + I+ Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+ I++EL+ +L +L +LLEAQRLEQR YDLEM+ G C Sbjct: 245 PASHFVTREEKMEKAIINIEQELEEQLEKLRDNEKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D ++ VDESHVTIPQI MY GD RK L ++ Sbjct: 305 GIENYSRHLTLRPSGSTPYTLLDYFPDDFMIVVDESHVTIPQIRAMYNGDQARKQVLVDH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ + VSATPG +ELE+ +VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPE-VVEQIIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI+ ++ R+L+T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 424 VRPIEGQIDDLIGEIHARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +TKS+ +AI ET RRRE+Q +N+K+ I PQ++ +KI + I + + Sbjct: 544 NSEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHE 603 Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + A +LS +SKK+ + ++ + +M AA L+FE+AA +RD + LK+ Sbjct: 604 ESEEYETNAAPKLSKMSKKEREKVIEKVEMEMKDAAKALDFEKAAELRDLLLELKA 659 >gi|323360118|ref|YP_004226514.1| helicase subunit of the DNA excision repair complex [Microbacterium testaceum StLB037] gi|323276489|dbj|BAJ76634.1| helicase subunit of the DNA excision repair complex [Microbacterium testaceum StLB037] Length = 689 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/678 (51%), Positives = 479/678 (70%), Gaps = 22/678 (3%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 ++ + F++ ++Y PSGDQP AIA L I++ E +LLG TG+GK+ T A ++E +QR Sbjct: 4 TRSVRPFEVISEYSPSGDQPQAIADLAARINAGETDVVLLGATGTGKSATTAWLVEQVQR 63 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +V+A NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN + Sbjct: 64 PTLVLAHNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINAE 123 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 ++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y + +V L++G+ ++ L+ + Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGAPEEYLRAMVALQVGERYDRDALIRKFIS 183 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY R D+ RG FRV GD+IEI P + E+ A R+ MFG++IE + +PLTG I + Sbjct: 184 MQYNRNDVDFSRGNFRVRGDTIEIIPVY-EEYAIRIEMFGDEIEALYTLHPLTGDVIEKM 242 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 +++ I+ SHYV T+ A+ I+ EL+ RL E E +G+LLEAQRL R T+DLEML+ Sbjct: 243 DSVPIFPASHYVAGTETVQRAIGTIEHELEHRLKEFESQGKLLEAQRLRMRTTFDLEMLQ 302 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSR++ GR GEPP TL ++ P+D LL +DESHVT+PQI MY GD RK Sbjct: 303 QLGFCSGIENYSRHMDGRVAGEPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRK 362 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL E+GFRLPS MDNRPLR++E+ T+ +SATPG +E+ G+ VEQIIRPTGL Sbjct: 363 RTLVEHGFRLPSAMDNRPLRWDEFKERIGQTVYLSATPGRYEMGIADGV-VEQIIRPTGL 421 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 VDP + ++ ++ Q++D+ +EI + ++ R+L+T LTK+MAE+LT++L E +RVRY+HS Sbjct: 422 VDPEIIVKPSKGQIDDLLEEIRVRVERDERVLVTTLTKKMAEELTDFLGEHGVRVRYLHS 481 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 +V TL R+E++ +LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQT Sbjct: 482 DVDTLRRVELLTELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQT 541 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +NK+H I+PQ +++KI ++ + Sbjct: 542 IGRAARNVSGEVHMYADKITDSMRNAIDETERRREKQVAYNKEHGIDPQPLRKKIADITE 601 Query: 735 PILLEDAATTNISIDAQQLSLSKKK--------------GKAHLKS----LRKQMHLAAD 776 +L AT + A+ K K G L+S L +QM AA Sbjct: 602 --VLNREATDTKKLLARNDKAGKGKSPTPQLRRTGIAAEGADQLESTIADLTQQMLAAAA 659 Query: 777 NLNFEEAARIRDEIKRLK 794 L FE A R+RDE++ LK Sbjct: 660 ELKFELAGRLRDEVQDLK 677 >gi|237740540|ref|ZP_04571021.1| excinuclease ABC subunit B [Fusobacterium sp. 2_1_31] gi|229422557|gb|EEO37604.1| excinuclease ABC subunit B [Fusobacterium sp. 2_1_31] Length = 663 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/651 (52%), Positives = 472/651 (72%), Gaps = 4/651 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ ++Y P GDQP AI ++K I K Q+LLGVTGSGKTFT+A VIE +QRPA++ Sbjct: 4 NLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + +++KEL+ L+ +Y+ Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIQRKELMKKLIALRYE 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R DI RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQKI+ N+E I Sbjct: 184 RNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + ++ IK++L++ + E E +LLEAQRL QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMINEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD RK L Sbjct: 303 YCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKEAL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPL+FEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLKFEEFREKSNQTVFISATPGDFEIEVSDNNIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N +NI+P+S+ ++I E D I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DLIN 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 L+ + +++ SK + + L K++ + L+FE+A +RD Sbjct: 601 LDYGIEDKKFENDKKVFRSKADIEKEITKLEKKIKKLVEELDFEQAIVLRD 651 >gi|57866394|ref|YP_188019.1| excinuclease ABC subunit B [Staphylococcus epidermidis RP62A] gi|251810192|ref|ZP_04824665.1| excinuclease ABC subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|282875661|ref|ZP_06284532.1| excinuclease ABC, B subunit [Staphylococcus epidermidis SK135] gi|293368220|ref|ZP_06614849.1| excision endonuclease subunit UvrB [Staphylococcus epidermidis M23864:W2(grey)] gi|71153395|sp|Q5HQX0|UVRB_STAEQ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|57637052|gb|AAW53840.1| excinuclease ABC, B subunit [Staphylococcus epidermidis RP62A] gi|251806244|gb|EES58901.1| excinuclease ABC subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|281295688|gb|EFA88211.1| excinuclease ABC, B subunit [Staphylococcus epidermidis SK135] gi|291317643|gb|EFE58060.1| excision endonuclease subunit UvrB [Staphylococcus epidermidis M23864:W2(grey)] gi|329736811|gb|EGG73076.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU028] gi|329737999|gb|EGG74223.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU045] Length = 661 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/659 (53%), Positives = 468/659 (71%), Gaps = 10/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P GDQP AI +++ G++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+++SVSCIYG+G+ E Y ++V +++G +E+ ELL LV QY R Sbjct: 127 SATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLIDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI + D Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 QQ L KK K ++++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ETNQQ-----QQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659 >gi|124021794|ref|YP_001016101.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9303] gi|189037987|sp|A2C5S6|UVRB_PROM3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|123962080|gb|ABM76836.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT 9303] Length = 679 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/671 (52%), Positives = 467/671 (69%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + ++ Y P GDQP AIA+L++G++ ++ Q LLG TG+GKTFT+A +I RPA+V+A Sbjct: 4 YHLKAPYSPKGDQPTAIARLVEGVNQGQRYQTLLGATGTGKTFTIANLIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ FFP N+VEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNEFREFFPDNSVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ERND IVV+S+SCIYG+G Y + V+ K+G+++ + L LV QY R Sbjct: 124 SATRSLFERNDVIVVASISCIYGLGIPSEYLKAAVKFKVGETLNLRSSLRELVDNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++E I IY Sbjct: 184 DFDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYLDPTTGEILQSLEAINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ LN A++ I++EL+ RL L ++G+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKERLNVAVQAIRDELRERLQVLNEQGKLLEAQRLEQRTAYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR+ G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLAGRSAGTPPECLIDYFPDDWLLVVDESHVTCSQLKAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ EE W R T+ VSATPG WEL Q G + EQ+IRPTG++DP V Sbjct: 363 GFRLPSAADNRPLKSEEFWRKAR-QTVFVSATPGDWELTQSDGQLAEQVIRPTGVLDPLV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + QV+D+ EI + A++ R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++ Sbjct: 422 EVRPTQGQVDDLLAEIRIRAKKQERVLITTLTKRMAEDLTDYLAENDVRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LV ILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 R+V+ +LYAD +T S+ AI ET RRRE Q +N+ + I P+ ++ I L Sbjct: 542 RHVDGMALLYADNLTDSMARAISETERRREIQKAYNELNGIVPRPAGKRASNSILSFLEL 601 Query: 738 -------LEDAATTNI---SIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 +DA I ++DA Q L+ + L +M AA NLNFEEA Sbjct: 602 SRRLQTDGKDADLVQITGRAVDALDSDQDSGLALDALPELIDQLETKMKEAAKNLNFEEA 661 Query: 784 ARIRDEIKRLK 794 A +RD IK+ + Sbjct: 662 ASLRDRIKKFR 672 >gi|123969390|ref|YP_001010248.1| excinuclease ABC subunit B [Prochlorococcus marinus str. AS9601] gi|123199500|gb|ABM71141.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. AS9601] Length = 679 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/670 (51%), Positives = 468/670 (69%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+ RPA+V+A Sbjct: 4 YKLQAPYEPNGDQPEAIKKLVKGVNNGKQFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G S+ + L SLV+ QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FR+ GD +EI P++ ED R+ +FG+++E I P TG+ + ++E + +Y Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ I+ ELK +L + EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR G PP L +Y P+D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC G +EQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDPVID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ EI + A++ R+L+T LTKRMAEDLT++L E +RVRY+HSE+ ++E Sbjct: 423 VRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V +LYAD T S++ AI ET RRR Q ++N+ + I P+ +KI I L Sbjct: 543 HVEGVALLYADNFTDSMKRAISETDRRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602 Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKAHLKSLRK-------QMHLAADNLNFEEAA 784 L+ + NI + LS + L+ L +M AA LNFEEAA Sbjct: 603 RKLDAGGLSKDLINIVNNKTDAILSSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKKLR 672 >gi|288560344|ref|YP_003423830.1| excinuclease ABC B subunit UvrB [Methanobrevibacter ruminantium M1] gi|288543054|gb|ADC46938.1| excinuclease ABC B subunit UvrB [Methanobrevibacter ruminantium M1] Length = 651 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/655 (54%), Positives = 463/655 (70%), Gaps = 10/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P GDQP AI L GI Q LLGVTGSGKT+TMA +I+ +Q+P ++++ Sbjct: 4 FKLKSPYKPLGDQPQAIESLSNGIKEGFHEQTLLGVTGSGKTYTMANIIQNVQKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KE+SINE ID MRH Sbjct: 64 HNKTLAAQLYEEFKVFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKEASINEDIDIMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLL R+D IVVSSVSCIYGIGS E Y + + +GD ++ ++L L+ QY+R Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFSINVGDIYDRGDILRKLIFMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEI P H R+ +FG++I+ IS P+TG + ++ I+ Sbjct: 184 DIAFERGQFRVRGDVIEINPVH-GTPPIRIELFGDEIDAISLINPVTGMREESINRYVIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V ++ A+K I+ EL+ RL EL EG+ LEAQRLEQR +DLEML G C Sbjct: 243 PAKHFVVGADRMDQALKDIEAELQSRLNELNLEGKYLEAQRLEQRTRFDLEMLREMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+GRN G+ P +L +Y P+D L +DESHVT+PQI GMY GD RK TL Y Sbjct: 303 GIENYSMHLSGRNWGDMPYSLLKYFPDDYLTIIDESHVTVPQIRGMYNGDRARKETLVNY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ + + VSATPG +EL + + +VEQIIRPTGLVDP + Sbjct: 363 GFRLPSAKENRPLRFDEFEASQNQVLYVSATPGPYELSRSKN-VVEQIIRPTGLVDPKIT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QVED+ E+ + RIL+T LTKRMAEDLT+Y + I+VRY+HSE+ TLE Sbjct: 422 IRPVKGQVEDLLGEVRRKVEHDQRILVTTLTKRMAEDLTDYYAKIGIKVRYLHSEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR G+FDVLVG+NLLREGLD+PE GLVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RVEIIDDLRRGEFDVLVGVNLLREGLDLPEVGLVAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V++Y D +T S++ A+D T +RR+ Q+ +N+K+NI P++ + + E L D Sbjct: 542 NVDGEVLMYVDEMTDSVRNAVDITNKRRKLQMAYNEKYNITPKTTQRTLKEK----KLAD 597 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + + + K + K +K L +M AA+NL FE+AA +RD+I LKS Sbjct: 598 RAPSRDDLRG----MPKDELKLLIKDLEAEMREAANNLEFEKAASLRDQIVALKS 648 >gi|242242128|ref|ZP_04796573.1| excinuclease ABC subunit B [Staphylococcus epidermidis W23144] gi|242234441|gb|EES36753.1| excinuclease ABC subunit B [Staphylococcus epidermidis W23144] gi|319401165|gb|EFV89380.1| excinuclease ABC, B subunit [Staphylococcus epidermidis FRI909] Length = 661 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/655 (53%), Positives = 470/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P GDQP AI +++ G++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+++SVSCIYG+G+ E Y ++V +++G +E+ ELL LV QY R Sbjct: 127 SATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIQRIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLIDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI + D Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++KK+ + ++++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659 >gi|148643639|ref|YP_001274152.1| excinuclease ABC subunit B [Methanobrevibacter smithii ATCC 35061] gi|189037982|sp|A5UNK6|UVRB_METS3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|148552656|gb|ABQ87784.1| excinuclease ABC, subunit B, UvrB [Methanobrevibacter smithii ATCC 35061] Length = 655 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/657 (54%), Positives = 464/657 (70%), Gaps = 13/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI L+ GI+ EK Q LLGVTGSGKTFTMA VIE +Q+P +V++ Sbjct: 4 FKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID MRH Sbjct: 64 HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDIMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLL R+D IVVSSVSCIYGIGS E Y + + +GD+ ++ +++ LV QY+R Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEI P H RV +FG++I+ IS +TG+K +++ I+ Sbjct: 184 DIEFARGHFRVRGDVIEINPVH-GTPPVRVELFGDEIDAISLIDKVTGKKTESLKRYMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V + ++TA++ I +EL RL E +LLEAQRLEQR +D+EML+ G C Sbjct: 243 PAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS +L+GR GE P +L +Y PED L +DESHVT+PQI GMY GD RK TL E+ Sbjct: 303 GVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ I VSATPG++EL + IVEQIIRPTGLVDP V Sbjct: 363 GFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDPEVI 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QVED+ E+ A++ R+L+T LTK+MAEDLT+Y + ++VRYMHSE+ TLE Sbjct: 422 IRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLR++TSLIQTIGRAAR Sbjct: 482 RIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME--VIDPILL 738 N+N +VI+Y D +T S++ A T++RR+ Q+++N+KH I P++ K + + V + + + Sbjct: 542 NINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDKKVAEDLDI 601 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E + I D +L +S L M AA L+FE AA +RD+I LK Sbjct: 602 EGTDISKIPKDELRLLIS---------DLENDMKEAAAKLDFERAASLRDQIATLKG 649 >gi|325478234|gb|EGC81353.1| excinuclease ABC, B subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 656 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/662 (53%), Positives = 469/662 (70%), Gaps = 10/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI +L KGI Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FELNSEYKPRGDQPYAIEKLSKGIEDGAHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL++EFK FFP+NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN++ID+MRH Sbjct: 63 HNKTLAYQLFTEFKEFFPNNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G Y +++V L+ G + ++++ L+ QY R Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPGQEISPEDVMRKLIDVQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR GD +++FP+ + A R FG++I++ISEF LTG+ + IY Sbjct: 183 DVEFTRGTFRRRGDILDVFPAGFDQKAIRFEFFGDEIDQISEFDSLTGKVTAKISHAYIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T A+ I+EEL+ RL EL KE +LLEAQRLEQR YD+EML G C Sbjct: 243 PASHYATSSEKTEKAIVSIEEELEERLAELNKENKLLEAQRLEQRTKYDIEMLREIGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y PED +L VDESHV+IPQ+ GMY GD RK L ++ Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ L + VSATPG +E+E+ G +V+QIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLKFHEFEKLINQAVYVSATPGPYEMEKTNGKMVDQIIRPTGLLDPLIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +E++ + R+L+T LTK+MAEDLT +L E I+V+Y+HS++KT+E Sbjct: 423 VRPTENQIDDLIEEVHKTIAKKERVLVTTLTKKMAEDLTTFLQENGIKVKYLHSDIKTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG+FDVLVGINLLREGLDIPE L+ ILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+Y D ITKS+Q AIDET RRR+ Q + N+K+ I P ++++ I E+I Sbjct: 543 NSEGRVIMYGDKITKSMQKAIDETERRRKIQEDFNEKNGITPTTIRKNIGEII------- 595 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T + + SK +A L ++ +M+ AA+ L+FE AA +RD+IK +K + F Sbjct: 596 -QITKKEEEEEIEEFSKDDIEAILINMEAEMYKAAEELDFERAANLRDQIKNMKEN--FT 652 Query: 801 GL 802 G+ Sbjct: 653 GV 654 >gi|318043042|ref|ZP_07974998.1| excinuclease ABC subunit B [Synechococcus sp. CB0101] Length = 669 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/660 (53%), Positives = 455/660 (68%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ Y P GDQPAAI L+ G+ E+ Q LLG TG+GKTFT+A VI RPA+V+A Sbjct: 5 YQLHAPYSPKGDQPAAIQGLVAGVEGGERYQTLLGATGTGKTFTIANVIAQTGRPALVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 65 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 125 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNLRGSLRELVNNQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++E+I IY Sbjct: 185 DLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLESINIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A+K I+ EL+ RL L ++GRLLEAQRLEQR TYDLEMLE G C Sbjct: 244 PAKHFVTPKERLADAIKAIRSELRERLDVLNEQGRLLEAQRLEQRTTYDLEMLEQVGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 304 GVENYARHLAGRAAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDQSRKQVLIEH 363 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ E W R TI VSATPG WE+ Q G +VEQ+IRPTG++DP V Sbjct: 364 GFRLPSAADNRPLKGSEFWEKAR-QTIFVSATPGDWEMRQSDGQVVEQVIRPTGVLDPIV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI L A + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++ Sbjct: 423 EVRPTEGQVDDLLGEIRLRADKRERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHSI 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 483 ERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 R+V +LYAD +T S+ AI ET RRR Q +N+KH I P ++ I L Sbjct: 543 RHVEGVALLYADNLTDSMDKAITETERRRAIQQSYNEKHGITPTPAGKRAGNSILAFLEV 602 Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L D + A+ + ++ L ++M AA NL FEEAA +RD IK L+ Sbjct: 603 SRRLNDEQLEQATEQAEHNEVPLDALPELIQQLEEKMKSAAKNLEFEEAANLRDRIKGLR 662 >gi|320104307|ref|YP_004179898.1| Excinuclease ABC subunit B [Isosphaera pallida ATCC 43644] gi|319751589|gb|ADV63349.1| Excinuclease ABC subunit B [Isosphaera pallida ATCC 43644] Length = 686 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/659 (52%), Positives = 473/659 (71%), Gaps = 5/659 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ F++ + + P+GDQP AI L+ GI S + Q LLGVTGSGKTFTMA VI + RPA+ Sbjct: 1 MSVFELVSPFPPAGDQPKAIEALVDGIRSGKTHQTLLGVTGSGKTFTMANVIARLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EF+ FFP NAV YFVSYYDYYQPEAY+P+ D YIEK+++IN++I+R Sbjct: 61 VLSHNKTLAAQLYGEFREFFPRNAVRYFVSYYDYYQPEAYIPQRDIYIEKDAAINDEIER 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R +AT +L+ R D +VV+SVS IYG+GS + Y +M + L +GD +++ ELL LV QY Sbjct: 121 LRLAATAALVSRRDVVVVASVSSIYGLGSPDHYKRMTIHLSVGDIIDRDELLLKLVDIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R DI R FRV GD +EI+P + E++A+RV +FG+++E ++E PLTG+ + + + Sbjct: 181 ERNDIAFERSKFRVRGDVVEIWPGY-EEIAYRVELFGDEVESLAEIDPLTGKTLLKKKEM 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I HYV P + A+ IK EL+ RL +L+ +G+LLEAQRL R YDLEML G Sbjct: 240 LIQPAKHYVMPEEKIEAAVTSIKAELEERLKQLQDQGKLLEAQRLAARTRYDLEMLLEVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 CQ IENYSR+ GR PGEPP TL +Y P+D+L+F+DESHVTIPQ+ GM+ GDF RK+TL Sbjct: 300 RCQGIENYSRHFDGRKPGEPPYTLMDYFPKDTLVFIDESHVTIPQVRGMFAGDFSRKSTL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS +DNRPLRF+EW I VSATPG +ELE+ G +VEQ+IRPTGLVDP Sbjct: 360 VEHGFRLPSAIDNRPLRFDEWEAKLGQVIFVSATPGDYELEKSGGEVVEQVIRPTGLVDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + + AR QV + E A++G R+L+T LTKR+AEDL+ YL E ++ +++HSE+ Sbjct: 420 KIRVEPARDQVPQLLKECKARAEKGERVLVTTLTKRLAEDLSRYLKEEGLKCKWLHSELD 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ER+ I+R+LR G FDVLVG+NLLREGLD+PE LV ILDADKEGFLRS+TSLIQTIGR Sbjct: 480 AFERVTILRELREGAFDVLVGVNLLREGLDLPEVSLVCILDADKEGFLRSETSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR++N++V+LYAD +T S++ A+DET RRR QL +N +H I P+++ + I I+ + Sbjct: 540 AARHINAEVVLYADKVTPSMKRALDETERRRGLQLAYNAEHGITPETIVKAIRRGIEEEI 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 N ++ +L+ + + +L +L +M AA+ L FE AA +RD I +K++ Sbjct: 600 QARTEARN-AVGRDELT---DQIEDYLAALEAEMLQAAEQLEFERAAELRDRILAVKAA 654 >gi|328957263|ref|YP_004374649.1| UvrABC system protein B [Carnobacterium sp. 17-4] gi|328673587|gb|AEB29633.1| UvrABC system protein B [Carnobacterium sp. 17-4] Length = 664 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/653 (53%), Positives = 468/653 (71%), Gaps = 7/653 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L+KGI + EK Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 6 FELVSKYQPSGDQPDAIKKLIKGIEAGEKEQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEKESS+N++ID++RH Sbjct: 66 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKESSVNDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+ + E Y ++ L++G + + E+L LV Q++R Sbjct: 126 SATSALLERRDVIVVASVSCIYGLVNPEDYRDHVLSLRVGTEMNRDEMLRRLVDMQFERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIF + + A RV FG++I+ I E LTG+ +V+ + I+ Sbjct: 186 DIDFQRGRFRVRGDVVEIFLASRDSEAIRVEFFGDEIDRIREVDVLTGEIKADVQHVPIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V +A+K I+EEL+ RL L E +L+EAQRLEQR YDLEML G C Sbjct: 246 PATHFVANDEQTRSAIKNIQEELEERLKVLRAEDKLIEAQRLEQRTNYDLEMLLEMGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D L+ +DESH+T+ QI GMY GD RK+ L EY Sbjct: 306 GIENYSRHMDGRKPGEAPYTLIDFFPDDFLIVIDESHITMSQIRGMYNGDRARKSQLIEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLRLEEFENHVNQIMYISATPGPYELERAPEVI-EQIIRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++ R+ +T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 425 VRPIKGQIDDLIGEINERTEKNERVFITTLTKKMSEDLTDYLKEVGIKVAYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLG +DVL+GINLLREG+D+PE LV ILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 485 RTEIIRNLRLGVYDVLIGINLLREGIDVPEVSLVIILDADKEGFLRSERSLVQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N N KVI+YAD IT S++ AI ET RRRE Q E+N+KH I P+++ + I ++I + Sbjct: 545 NENGKVIMYADRITDSMRAAISETERRRETQEEYNEKHGITPKTIIKDIRDLISITSVVK 604 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 ED + + A+ +++++ + + +M +AA LNFE+AA IRD I Sbjct: 605 GEDEGASGLENIAK---MTREQRLELIDGMEVEMKVAAKELNFEKAANIRDMI 654 >gi|329946780|ref|ZP_08294192.1| excinuclease ABC, B subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328526591|gb|EGF53604.1| excinuclease ABC, B subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 698 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/677 (52%), Positives = 479/677 (70%), Gaps = 25/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + + + EK +LLG TG+GK+ T A ++E +QRP +++ Sbjct: 14 FEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 74 PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y + L++G +++ ELL V QY R Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDELLRRFVTMQYIRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++IE ++ +P+TG I E + ++ Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTAEQVFVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A++ I+ EL RL +LE +GRLLEAQRL R TYDLEML+ G C Sbjct: 253 PASHYVAGPERMQKAIEGIETELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G PP TL +Y PED LL +DESHVT+PQI M+ GD RK TL ++ Sbjct: 313 GIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ T+ +SATPG +E ++ G+ VEQIIRPTGLVDP V Sbjct: 373 GFRLPSALDNRPLTFAEFEDRVGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +E+ ++ RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL Sbjct: 432 VKPTEGQIDDLLEEVRTRVEREERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G+FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 492 RVELLRELRMGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADTIT ++ AI+ET RRR KQL +N +H I+PQ +++KI +V D + ED Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLTYNTEHGIDPQPLRKKIADVTDMLARED 611 Query: 741 AATTNI-----------SIDAQQLSLS------KKKGKAH------LKSLRKQMHLAADN 777 T ++ S+ A++ + K G A + L +QMH AA++ Sbjct: 612 VDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLVELINELTQQMHAAAED 671 Query: 778 LNFEEAARIRDEIKRLK 794 L+FE AAR+RDEI+ LK Sbjct: 672 LHFELAARLRDEIQDLK 688 >gi|315225699|ref|ZP_07867506.1| excision endonuclease subunit UvrB [Capnocytophaga ochracea F0287] gi|314944362|gb|EFS96404.1| excision endonuclease subunit UvrB [Capnocytophaga ochracea F0287] Length = 665 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/665 (52%), Positives = 469/665 (70%), Gaps = 17/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI QL+KGI +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A Sbjct: 3 FNIVSDFAPTGDQPQAIDQLVKGIERDDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPSTGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D +VV+SVSC+YGIG+ + + ++ LK GD + + +L+ LV+ Y R Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITLKQGDILPRTKLMHRLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FR+ GD +++FP + +D A+R+ FG++IEEI +F P T + + +++ I Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHVLDHYQSLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ E G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLVKQVEFFEALGKPLEAKRLKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL+Q QG+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ RIL+T LTKRMAE+LT+YL IR RY+HS+V TL Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN K I+YAD IT S+Q ID+T RREKQ+ +NK HNI PQ + +KI + Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPVT 601 Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 DP E A +AQ + LS K+ + +K RK M +AA L+F +AA+ RDE Sbjct: 602 EFHYDPSFKERTAA-----EAQSVYLSAKELEKKIKETRKLMEVAAKELDFVKAAQYRDE 656 Query: 790 IKRLK 794 +K+L+ Sbjct: 657 LKKLQ 661 >gi|154506003|ref|ZP_02042741.1| hypothetical protein RUMGNA_03545 [Ruminococcus gnavus ATCC 29149] gi|153793502|gb|EDN75922.1| hypothetical protein RUMGNA_03545 [Ruminococcus gnavus ATCC 29149] Length = 666 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/654 (53%), Positives = 473/654 (72%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ Y P+GDQP AI QL+KG + Q LLGVTGSGKTFTMA VIE +Q+P +V+A Sbjct: 9 FILKAPYKPTGDQPQAIEQLVKGFKEGNQCQTLLGVTGSGKTFTMANVIEQLQKPTLVIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++R Sbjct: 69 HNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRL 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y M++ L+ G ++ E+++ L++ QY R Sbjct: 129 SATMALAERRDVIIVASVSCIYGLGSPVDYQNMVISLRPGMIKDRDEVVAKLIEIQYDRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +E+ P++ DVA R+ FG++++ I+E LTG+ ++ + I+ Sbjct: 189 DMDFHRGTFRVRGDVLEVIPAYESDVAIRIEFFGDEVDRITEVDILTGEIKDELKHVAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + +N A+K I+EEL+ R+ E +++ +LLEAQR+ +R +D+EM++ TG C Sbjct: 249 PASHYVVDKENINRAVKAIEEELEERVKEFKRQDKLLEAQRIAERTNFDIEMMKETGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD RK+TL +Y Sbjct: 309 GIENYSRHLAGLAPGQAPYTLIDYFPDDFVIMIDESHKTIPQIGGMYSGDQSRKSTLVDY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E E+ + + EQ+IRPTGL+DP VE Sbjct: 369 GFRLPSAKDNRPLNFEEFESKINQVLFVSATPGVYE-EEHELLRAEQVIRPTGLLDPEVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS+V TLE Sbjct: 428 VRPVEGQIDDLIGEINQEISRKNKVLVTTLTKRMAEDLTDYMREIGIRVKYLHSDVDTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 488 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++LAIDET RRR+ Q+ +N++H I P+++++ + + I + + Sbjct: 548 NSEGHVIMYADKLTDSMRLAIDETERRRKIQMAYNEEHGITPKTIQKAVRDQIS--ISKK 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + ++ S+S+K+ + + + K+M AA L+FE AA +RD++ LK Sbjct: 606 VAAEELKLEKDPESMSRKELEKLIGEVTKRMKKAAAELDFESAAELRDKLIELK 659 >gi|237756940|ref|ZP_04585409.1| excinuclease ABC subunit B [Sulfurihydrogenibium yellowstonense SS-5] gi|237690900|gb|EEP60039.1| excinuclease ABC subunit B [Sulfurihydrogenibium yellowstonense SS-5] Length = 663 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/654 (52%), Positives = 466/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++++ P+GDQP AI QL + + S Q+LLG TG+GKTFT+A +IE +P ++++ Sbjct: 6 FNLKSNFKPTGDQPKAIKQLYENLISGVNQQVLLGATGTGKTFTIANLIEKYGKPTLILS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+RH Sbjct: 66 HNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDAIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G ++++ LL LV+ QY+R Sbjct: 126 SATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQRD 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTF+V GD++EI P++ ED+ RV FG++IE ISE R ++ I+ Sbjct: 186 DFSLKRGTFKVKGDTVEILPAYTEDIIVRVEFFGDEIESISEIDIFNRDVKRKLDRTVIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV PRP + A+K I+++L++ + E ++ G+ +EA RL QR YD+EM+ G+C+ Sbjct: 246 PASHYVIPRPDMLEAIKQIQKDLEIEVEEFKRAGKEIEANRLWQRTNYDIEMMLELGTCK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y PED LL VDESHVTIPQI MY GDF RK L +Y Sbjct: 306 GIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIVDESHVTIPQIKAMYNGDFSRKENLVKY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+R+ S DNRPL+FEE+ I VSATP WE+++ +G+IVEQIIRPTGL+DP +E Sbjct: 366 GWRMKSAYDNRPLKFEEFVQKIQKAIYVSATPADWEIKRSKGVIVEQIIRPTGLLDPIIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +EI ++ R ++ LTK+MAE L +YL ER I+ Y+HSE+ T+E Sbjct: 426 VKKTGGQIDDLINEIWKVKERNERAIVITLTKKMAEHLADYLTEREIKAIYLHSEIDTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II++ R GK+DV+VG+NLLREGLD+PE LVA LDADK+GFLRSKT+LIQTIGRAAR Sbjct: 486 RVKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAALDADKQGFLRSKTALIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD +T ++ I+ET RRR+ Q E+NKKH I P++V + EV D I LE+ Sbjct: 546 NVNGKAILYADKLTPAMIETIEETNRRRKIQEEYNKKHGITPKTVSK---EVKDLISLEE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I S++ ++ L KQM A N FE+AA IRD++++LK Sbjct: 603 LGILEIYNQLPDDINSEEDLMKKIEQLEKQMWDYAKNWEFEKAAEIRDQLEKLK 656 >gi|297590309|ref|ZP_06948948.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus MN8] gi|297576608|gb|EFH95323.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus MN8] gi|312438814|gb|ADQ77885.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus TCH60] Length = 677 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/679 (51%), Positives = 481/679 (70%), Gaps = 16/679 (2%) Query: 128 SWSINNHSKDITF--------FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179 S +INN K+ + F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+ Sbjct: 2 SGNINNTLKEEAYVTMVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGT 61 Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 GKTFTM+ VI+ + +P +++A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP Sbjct: 62 GKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVP 121 Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299 TDT+IEK++SIN++ID++RHSAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++ Sbjct: 122 STDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRV 181 Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359 G +++ ELL LV QY R DI RGTFRV GD +EIFP+ E++ RV FG++I+ Sbjct: 182 GMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDR 241 Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419 I E LTG+ ++ E I+ SH+VT L A++ I++EL+ RL EL E +LLEA Sbjct: 242 IREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEA 301 Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479 QRLEQR YDLEM+ G C IENYS +LT R G P TL +Y +D L+ +DESHVT Sbjct: 302 QRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVT 361 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 +PQ+ GMY GD RK L ++GFRLPS +DNRPL+FEE+ + VSATPG +E+E Sbjct: 362 LPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEH 421 Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599 +VEQIIRPTGL+DP +E+R Q++D+ EI ++ R+L+T LTK+M+EDLT Sbjct: 422 TDK-MVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLT 480 Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 Y+ E I+V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDA Sbjct: 481 TYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDA 540 Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 DKEGFLRS SLIQTIGRAARN +VI+YAD +T S++ AIDET RRRE Q++HN+KH Sbjct: 541 DKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHG 600 Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAAD 776 I P+++ +KI ++I + D AQ + ++KK+ + + ++ K+M AA Sbjct: 601 ITPKTINKKIHDLISATVENDENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAK 656 Query: 777 NLNFEEAARIRDEIKRLKS 795 +L+FE+A +RD + LK+ Sbjct: 657 DLDFEKATELRDMLFELKA 675 >gi|157414255|ref|YP_001485121.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9215] gi|157388830|gb|ABV51535.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT 9215] Length = 679 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/670 (51%), Positives = 464/670 (69%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI QL+KG+++ ++ Q LLG TG+GKTFT+A VI+ RPA+V+A Sbjct: 4 YKLQAPYEPNGDQPEAIKQLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G S+ + L SLV+ QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FR+ GD +EI P++ ED R+ FG+++E I P TG+ + ++E + +Y Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIEFFGDEVEAIRYIDPTTGEILESLEQVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ I+ ELK +L + EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLEKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR G PP L +Y P+D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC G +EQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGKFIEQVIRPTGVLDPVID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ EI + A++ R+L+T LTKRMAEDLT++L E +RVRY+HSE+ ++E Sbjct: 423 VRPSEGQIEDLLSEIRIRAKKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V +LYAD T S++ AI ET RRR Q ++N+ + I P+ +KI I L Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEAA 784 + +++ K + L S L +M AA LNFEEAA Sbjct: 603 RKLDADGLSKDLINIVNNKTDSILNSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKKLR 672 >gi|293399737|ref|ZP_06643883.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306137|gb|EFE47380.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 660 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/658 (53%), Positives = 464/658 (70%), Gaps = 5/658 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y P GDQP AI +L++GI +K Q+LLG TG+GKTFT++ VI + +P +V Sbjct: 7 LFDLVSEYQPQGDQPKAIKELVEGIKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLVF 66 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R Sbjct: 67 AHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDMLR 126 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +A S+LER D I+++SV+CIYG + E Y M +++GD +++KEL+ LV +QY+R Sbjct: 127 MAAVNSILERRDTIIIASVACIYGASNPEQYRDMFFSIRVGDIIDRKELMGKLVARQYQR 186 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK- 378 D+ +IRGTFRV GD IE+ H + R+ MF ++IE I E PLTG K++N T+ Sbjct: 187 NDMDLIRGTFRVRGDVIEVALGHTDSYILRIEMFDDEIERICEVDPLTG-KVQNAYTVYV 245 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y S Y T + +N A I EL+ RL EL+ EG+LLE QRLEQR YD+E L G Sbjct: 246 VYPASGYATKQEIINRAADTIGAELEERLKELDNEGKLLEKQRLEQRTRYDMEALREFGV 305 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD RK TL Sbjct: 306 CPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLV 365 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 YGFRLPS +DNRPLRFEE+ + + VSATPG +E+E+ G ++EQIIRPTGL+DP Sbjct: 366 NYGFRLPSALDNRPLRFEEFEKMYHQAVFVSATPGDYEMEKTHGEVIEQIIRPTGLLDPK 425 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R + Q++D+ DEI + R L+T LT RMAEDL+ YL + +V ++H EVKT Sbjct: 426 VEVRPTQGQIDDLVDEIKTRIARNERTLITTLTVRMAEDLSSYLKGMDFKVAWLHHEVKT 485 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER EIIRDLR GK+DVL+GINLLREGLDIPE L+AILDADKEGFLRS+ SLIQ IGRA Sbjct: 486 IERTEIIRDLRRGKYDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSERSLIQIIGRA 545 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN + +VI+YADTIT S+Q A+DET RRRE Q+ +NK+H I P+++ + I EV+ Sbjct: 546 ARNAHGEVIMYADTITGSMQKALDETARRREIQIAYNKEHGITPKTIIKPIHEVVRSKET 605 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ +S A+ K+K L +L K+M AA L+FE AA +RD + L++S Sbjct: 606 QEMTAKYMSKKAKVTKKDKEK---LLVNLEKEMKEAAKVLDFERAAELRDILIELRNS 660 >gi|222444870|ref|ZP_03607385.1| hypothetical protein METSMIALI_00484 [Methanobrevibacter smithii DSM 2375] gi|222434435|gb|EEE41600.1| hypothetical protein METSMIALI_00484 [Methanobrevibacter smithii DSM 2375] Length = 655 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/657 (54%), Positives = 464/657 (70%), Gaps = 13/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI L+ GI+ EK Q LLGVTGSGKTFTMA VIE +Q+P +V++ Sbjct: 4 FKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID MRH Sbjct: 64 HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDIMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLL R+D IVVSSVSCIYG+GS E Y + + +GD+ ++ +++ LV QY+R Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGVGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEI P H RV +FG++I+ IS +TG+K +++ I+ Sbjct: 184 DIEFARGHFRVRGDVIEINPVH-GTPPVRVELFGDEIDAISLIDKVTGKKTESLKRYMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V + ++TA++ I +EL RL E +LLEAQRLEQR +D+EML+ G C Sbjct: 243 PAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS +L+GR GE P +L +Y PED L +DESHVT+PQI GMY GD RK TL E+ Sbjct: 303 GVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ I VSATPG++EL + IVEQIIRPTGLVDP V Sbjct: 363 GFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDPEVI 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QVED+ E+ A++ R+L+T LTK+MAEDLT+Y + ++VRYMHSE+ TLE Sbjct: 422 IRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLR++TSLIQTIGRAAR Sbjct: 482 RIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME--VIDPILL 738 N+N +VI+Y D +T S++ A T++RR+ Q+++N+KH I P++ K + + V + + + Sbjct: 542 NINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDKKVAEDLDI 601 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E + I D +L +S L M AA L+FE AA +RD+I LK Sbjct: 602 EGTDISKIPKDELRLLIS---------DLENDMKEAAAKLDFERAASLRDQIATLKG 649 >gi|118472594|ref|YP_888108.1| excinuclease ABC subunit B [Mycobacterium smegmatis str. MC2 155] gi|118173881|gb|ABK74777.1| excinuclease ABC, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 736 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/690 (52%), Positives = 481/690 (69%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 45 FEVVSPYAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 104 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 105 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 164 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY V+L++G V + LL LV QY R Sbjct: 165 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGQEVPRDGLLRLLVDVQYNRN 224 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R VE+++I+ Sbjct: 225 DVAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRQVESLRIF 283 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I++EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 284 PATHYVAGPERMAAAIESIEKELEERLAELENQGKLLEAQRLRMRTNYDVEMMRQVGFCS 343 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 344 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 403 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 404 GFRLPSAVDNRPLTWEEFAERIGQTVYLSATPGPYEISQAGGEFVEQVIRPTGLVDPKVV 463 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 464 VKPTKGQIDDLIGEIRTRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 523 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 524 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 583 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+P+ +++KI +++D + E Sbjct: 584 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPKPLRKKIADILDQVYREA 643 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T ++ I + S+ + G+A +K L QM Sbjct: 644 DDTESVEIGGSGRNSSRGRRAQGEPGRAVSAGIVEGKDTSNMPRAELADLIKELTDQMMA 703 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AARIRDEI LK +G+D Sbjct: 704 AARDLQFELAARIRDEIADLKKE--LRGMD 731 >gi|126697177|ref|YP_001092063.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9301] gi|189037985|sp|A3PFD7|UVRB_PROM0 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|126544220|gb|ABO18462.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT 9301] Length = 679 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/670 (51%), Positives = 465/670 (69%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+ RPA+V+A Sbjct: 4 YKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G S+ + L SLV+ QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSYLRSLVENQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FR+ GD +EI P++ ED R+ +FG+++E I P TG+ + ++E + +Y Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ I+ ELK +L + EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR G PP L +Y P+D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC G +EQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDPVID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ EI + A++ R+L+T LTKRMAEDLT++L E +RVRY+HSE+ ++E Sbjct: 423 VRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V +LYAD T S++ AI ET RRR Q ++N+ + I P+ +KI I L Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEAA 784 + +++ K A L S L +M AA LNFEEAA Sbjct: 603 RKLDAGGLSKDLINIVNNKTDAILGSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKKLR 672 >gi|225019978|ref|ZP_03709170.1| hypothetical protein CLOSTMETH_03939 [Clostridium methylpentosum DSM 5476] gi|224947342|gb|EEG28551.1| hypothetical protein CLOSTMETH_03939 [Clostridium methylpentosum DSM 5476] Length = 664 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/657 (53%), Positives = 464/657 (70%), Gaps = 1/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+ + Y P+GDQP AIA+L++GI +K Q LLGVTGSGKTFTMA +I +Q+P +V+ Sbjct: 9 LFQLVSPYQPTGDQPEAIAKLVEGIKRGDKEQTLLGVTGSGKTFTMANIIAQVQKPTLVL 68 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL SEF+ FFP +AVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++R Sbjct: 69 AHNKTLAAQLCSEFREFFPTSAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLR 128 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSAT +L ER D I+V+SVSCIY +GS Y M++ L+ G + ELLS L+ QY+R Sbjct: 129 HSATCALAERRDVIIVASVSCIYSLGSPIDYRSMVISLREGMEKPRDELLSKLISIQYER 188 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI R RV GD +EIFP++ D A RV FG++I+ IS LTG+ V + I Sbjct: 189 NDINFTRNKVRVRGDVVEIFPAYSSDTAIRVEFFGDEIDRISMINALTGEVKERVAHVAI 248 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +SHY+ P ++ A+ +++EL R+ LLEAQR++QR YDLEMLE G C Sbjct: 249 YPSSHYIVPPDKMHEAVVKLEDELNERVKYFTDNEMLLEAQRIKQRTMYDLEMLEEIGFC 308 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + IENYSR L+GR PG P TL ++ P+D LLFVDESHV +PQ+ GM+ GD RK TL + Sbjct: 309 KGIENYSRVLSGRKPGAVPYTLLDHFPDDFLLFVDESHVMLPQVRGMFFGDHARKKTLID 368 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRPL F+E+ + VSATPG +E E VEQ+IRPTGL+DP + Sbjct: 369 YGFRLPSAYDNRPLNFDEFYSKINQAVFVSATPGPFEKEHSVQ-TVEQVIRPTGLLDPEI 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++ Q+ED+ EIN ++G R+L+T LTK+MAEDLT++L +RVRY+HS+V T+ Sbjct: 428 VVKPIEGQIEDLLSEINQRTEKGERVLVTTLTKKMAEDLTDFLEGMGVRVRYLHSDVDTI 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLRLG+FDVL+GINLLREGLDIPE LV ILDADKEGFLRS+TSLIQTIGRAA Sbjct: 488 ERMEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVCILDADKEGFLRSETSLIQTIGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + +VI+YAD +T S++ AI ET RRRE Q+ +N++H I P+++ + + E+++ Sbjct: 548 RNEHGQVIMYADEVTGSMERAITETMRRREIQMRYNEEHGIVPKTIHKNVHEILEISSKS 607 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A +Q LS+++ + +K L +M AA L FE A +RD I+ +K+S Sbjct: 608 PDAEKGKGKGKKQKKLSREEKQELIKKLTVEMKNAAKLLEFEHAIYLRDRIEEIKNS 664 >gi|220910556|ref|YP_002485867.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7425] gi|254764904|sp|B8HQA9|UVRB_CYAP4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|219867167|gb|ACL47506.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7425] Length = 665 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/665 (53%), Positives = 460/665 (69%), Gaps = 14/665 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ++ + P+GDQP AIAQL + + + Q LLG TG+GKT T+A+VIE + +P + Sbjct: 1 MTGFQIKAPFEPTGDQPRAIAQLTASLQAEHRFQTLLGATGTGKTHTIARVIEKIGKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK ++INE+ID Sbjct: 61 VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIEKTAAINEEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y V L++G V+Q++LL L QY Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLNASVPLQVGIEVDQRQLLRDLTTIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG +++++ + Sbjct: 181 SRNDLDLGRGRFRVKGDVLEIGPAY-EDRIVRVEFFGDEIDAIRYVDPVTGTTLQSLDNL 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +IY H+VTP+ L A I ELK RL ELE + +LLEAQRL+QR YDLEML G Sbjct: 240 RIYPARHFVTPQERLEIACADIAAELKDRLTELEAQNKLLEAQRLDQRTRYDLEMLREVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR+PGEPP TL +Y P+D LL VDESHVT+PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRSPGEPPETLIDYFPKDWLLVVDESHVTVPQIRGMYNGDQSRKRVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS DNRPL+ EE+ I VSATPG WEL+ + I+EQIIRPTG+VDP Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVTQCIFVSATPGDWELDISEDRIIEQIIRPTGVVDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R QV+D+ E+ ++ R+L+T LTKRMAEDLTEY +R +RVRY+HSE+ Sbjct: 420 EIFVRPTTGQVDDLLGEVRDRIERRERVLITTLTKRMAEDLTEYFQDRGVRVRYLHSEIG 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ERIEI+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGR Sbjct: 480 AIERIEILEDLRKGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR+V + ILYAD +T S+ AI ET RRR Q +N+KH I PQ + +K I L Sbjct: 540 AARHVRGQAILYADNLTDSMAKAISETERRRAIQTAYNQKHGITPQPIVKKASNAILAFL 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGK--------AHLKSLRKQMHLAADNLNFEEAARIRDE 789 + ++AQ+L + ++ + L QM AA L FEEAA+ RD Sbjct: 600 -----EVSRRLNAQELDTAYEQADELPLEDIPELITQLEAQMKEAAKKLEFEEAAKYRDR 654 Query: 790 IKRLK 794 IK+L+ Sbjct: 655 IKQLR 659 >gi|139439832|ref|ZP_01773209.1| Hypothetical protein COLAER_02240 [Collinsella aerofaciens ATCC 25986] gi|133774847|gb|EBA38667.1| Hypothetical protein COLAER_02240 [Collinsella aerofaciens ATCC 25986] Length = 753 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/688 (51%), Positives = 474/688 (68%), Gaps = 36/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+G QP AI L++G+ ++ Q+LLGVTGSGKTFTMAK IEA+ +P +VMA Sbjct: 32 FEVVSPYEPAGSQPKAIESLVRGVRDGDRYQVLLGVTGSGKTFTMAKTIEALGKPTLVMA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SE K FFP+NAV YFVSYYDYYQPEAYVP++DTYIEK+SSINE+++ +RH Sbjct: 92 PNKTLAAQLASELKEFFPNNAVVYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVEMLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D IVV+SVSCIYGIGS E Y+ + + +E+ + + +L+ QY R Sbjct: 152 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKVPLERDDFIHALIDIQYDRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD ++++P + E R FG+++E I+E +TG+ +R E I ++ Sbjct: 212 DYDLARGTFRVRGDVVDVYPPYAEH-PLRFEFFGDEVELIAEIDEVTGEMLREYEAIPVW 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT +P + A+K I EE + R+ EL+ +LLEAQRL+QR YDLEMLET G C Sbjct: 271 PASHYVTEKPKVKAALKSISEECEKRVAELKATDKLLEAQRLQQRTDYDLEMLETMGFCN 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D L +DESHVT+PQI GM+ GD RK TL E+ Sbjct: 331 GIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKVTLVEH 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ P I VSATPG +EL Q VEQIIRPTGL+DP ++ Sbjct: 391 GFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYELRVSQN-DVEQIIRPTGLLDPKID 449 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ DEI + R+L+T LTKRMAEDLT++L + I+V YMHS+ T++ Sbjct: 450 VRPVRGQIDDLEDEIRERVARKERVLVTTLTKRMAEDLTDHLLDAGIKVNYMHSDTATMD 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R LR GK DVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 510 RVEILRTLREGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 569 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD +T S++ AI+ET RRRE Q+ +N++H I P++V++ I + I + E Sbjct: 570 NADGEVIMYADVVTDSMKEAIEETQRRREIQMAYNEEHGIVPKTVRKAIND-ISSFIAEA 628 Query: 741 AATTNISIDAQQLSLS-------KKKGKAH--------------------------LKSL 767 T ++ SL + G+ ++++ Sbjct: 629 EKTVGSKGRSKGDSLGHGAFYTPDESGEGGVPETVAPEQTLAEQLQELPHDELVRIVETM 688 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795 + M A+ ++FEEAAR+RD + ++++ Sbjct: 689 EEDMRNASAAMDFEEAARLRDAVVQIRA 716 >gi|253580706|ref|ZP_04857970.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848077|gb|EES76043.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 662 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/656 (52%), Positives = 462/656 (70%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L++G + + LLGVTGSGKTFTMA VI + +P +++A Sbjct: 4 FELHSEYKPTGDQPQAIERLVRGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++R Sbjct: 64 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++ ER D +V+SSVSCIYG+GS + + M++ L+ G + ++ E++ L+ QY R Sbjct: 124 SATAAMSERKDVVVISSVSCIYGLGSPQEFFDMMISLRPGMTKDRDEVIRELIDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ R TFRV GD++EIFP++ D A RV FG++I+ ISE LTG+ I I+ Sbjct: 184 EMDFHRSTFRVRGDTLEIFPANSSDTAVRVEFFGDEIDRISEIDVLTGEIKCQRSHISIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P + A I+EELK R+ + E +LLEAQR+ +R +D+EM++ TG C Sbjct: 244 PASHYVVPAEQIQRAAVAIEEELKERVEYFKSEDKLLEAQRISERTNFDIEMMKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+G PG+PP TL +Y +D LL +DESH+T+PQ+ GMY GD RK TL +Y Sbjct: 304 GIENYSRHLSGLKPGQPPYTLLDYFGDDFLLIIDESHITVPQVGGMYAGDQSRKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E + + + EQIIRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLSFEEFESKLDQVMFVSATPGQYEYDH-ELLRAEQIIRPTGLLDPKVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + +IL+T LTKRMAEDLTEY+ E IRVRY+HS++ TLE Sbjct: 423 VRPIEGQIDDLIGEVNKEVSKKHKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RARIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S+ AI ET RRR Q +NK+H I P ++K+ + ++I + + Sbjct: 543 NSEGHVIMYADNMTDSMHKAITETNRRRTIQEAYNKEHGITPTTIKKAVRDLI--AVSKA 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T + + S+++K+ + + KQM AA +LNFE+AA +RD++ LK + Sbjct: 601 VAETEVRLQKDPESMTRKELTKLIAQVEKQMRAAAADLNFEQAAELRDKMIDLKKN 656 >gi|148381328|ref|YP_001255869.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 3502] gi|148290812|emb|CAL84946.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 3502] Length = 665 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++P+GDQP AI + KGI REK Q L+GVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 7 FKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 67 HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ LV+ QY+R Sbjct: 127 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++IFP+ A RV FG++I+ I EF LTG+ I ++ I I+ Sbjct: 187 DIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + ++LEAQRL+QR +D+EM+ G C Sbjct: 247 PASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y P+D LLF+DESHVT+PQ+ M GD RK +L EY Sbjct: 307 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL F+E+ + VSATP +ELE EQ+IRPTGL+DP + Sbjct: 367 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDLT+YL E ++ RY+HS++ T+E Sbjct: 426 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 486 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+Y D ITKS++ I ET RRR+ Q+E+N++H I P+++ + I EVI + D Sbjct: 546 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEHGIVPKTIIKDIREVIQ---ISD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A D +L ++ ++M AA NL FE+AA +RD I +LK Sbjct: 603 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 658 >gi|154483753|ref|ZP_02026201.1| hypothetical protein EUBVEN_01457 [Eubacterium ventriosum ATCC 27560] gi|149735244|gb|EDM51130.1| hypothetical protein EUBVEN_01457 [Eubacterium ventriosum ATCC 27560] Length = 660 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/654 (53%), Positives = 465/654 (71%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L++G ++ Q LLGVTGSGKTFTMA VIE + +P +++A Sbjct: 4 FELVSEYKPTGDQPQAIEELVEGFKKGKQFQTLLGVTGSGKTFTMANVIEQLNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D I++SSVSCIYG+G Y M+V L+ ++ E++ L++ QY R Sbjct: 124 SATMALMERKDVIIISSVSCIYGLGDPIDYKNMVVSLRPNTIRDRDEIIHKLIEIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV G+++EIFP+ D A RV F ++IE ISE LTGQ +E + I+ Sbjct: 184 DMDFKRGTFRVRGENLEIFPASYTDSAIRVEFFDDEIERISEIDALTGQIKNELEHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV P + A+K I++EL+ ++ + E +L+EAQR+ +R +D+EML TG C Sbjct: 244 PNSHYVVPPEKMERAIKDIEKELEEQVAYFKSEDKLIEAQRIAERTNFDMEMLRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ G PG P TL EY +D L+ VDESH+TIPQI GMY GD RK+TL +Y Sbjct: 304 GIENYSRHMAGLEPGATPHTLMEYFGDDFLIIVDESHITIPQIRGMYAGDQSRKSTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + + VSATP +E E G EQIIRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLNFEEFESMIDQMMFVSATPNVYEQEHELG-RAEQIIRPTGLLDPEVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + ++L+T LTKRMAEDLT+Y+ + IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLITEINKEVAKKNKVLVTTLTKRMAEDLTDYMRDVGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RTQIIRDMRLDVFDVLVGINLLREGLDIPEIALVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+ A+ ET RRRE Q ++N +H I P ++K+ + ++I D Sbjct: 543 NAEGHVIMYADNITDSMDKALTETNRRREIQQKYNNEHGITPTTIKKAVRDLISISKEVD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +++ D + S+ K+ K ++ ++K+M AA L+FE A +RD++ L+ Sbjct: 603 RKISDVEKDPE--SMDYKELKKLIEKVKKKMERAAAELDFETAIEMRDKLAELR 654 >gi|225377365|ref|ZP_03754586.1| hypothetical protein ROSEINA2194_03013 [Roseburia inulinivorans DSM 16841] gi|225210790|gb|EEG93144.1| hypothetical protein ROSEINA2194_03013 [Roseburia inulinivorans DSM 16841] Length = 667 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/655 (53%), Positives = 466/655 (71%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI +L++G + + LLGVTGSGKTFTMA VI + +P ++++ Sbjct: 11 FKLHAPYQPTGDQPQAIEELVRGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLIIS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R Sbjct: 71 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IV++SVSCIYG+GS E Y M+V L+ G ++ E++ +LV QY R Sbjct: 131 SATAALVERKDVIVIASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDEVIRALVDIQYTRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EIFP++ D A RV FG++I+ I+E LTG+ ++E ++ Sbjct: 191 DMDFHRGTFRVRGDTVEIFPANYSDTAIRVEFFGDEIDRITEIDVLTGEVKCSLEHFAVF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P + A I+ E++ R+ + E +LLEAQR+ +R +D+EML+ TG C Sbjct: 251 PASHYVVPMEKIQKACVNIEAEMEERVKYFKGEDKLLEAQRIAERTNFDIEMLKETGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G G P TL +Y +D L+ VDESH+TIPQI GMY GD RK+TL +Y Sbjct: 311 GIENYSRHLAGLPAGATPHTLMDYFKDDFLIIVDESHITIPQIGGMYAGDQSRKSTLVDY 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATP ++E E + + EQIIRPTGL+DP V Sbjct: 371 GFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNTYEDEH-ELLRAEQIIRPTGLLDPEVV 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 430 VRPVEGQIDDLIGEVNKETAKKHKVLITTLTKRMAEDLTDYMKELGIRVKYLHSDIDTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 490 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S++ AIDET RRR Q E+NK+HNI P+++++ + ++I + + Sbjct: 550 NSEGHVIMYADKITDSMRNAIDETERRRRIQQEYNKEHNITPKTIQKSVRDLIS--VSKK 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A ++ S++K++ + ++K+M AA +LNFE AA RD++ +LK+ Sbjct: 608 VAQEELNFKKDPESMNKEELTKLIADIQKKMQRAAADLNFEAAAEYRDQMLQLKT 662 >gi|153931681|ref|YP_001385704.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 19397] gi|153935352|ref|YP_001389110.1| excinuclease ABC subunit B [Clostridium botulinum A str. Hall] gi|153937973|ref|YP_001392743.1| excinuclease ABC subunit B [Clostridium botulinum F str. Langeland] gi|168178931|ref|ZP_02613595.1| excinuclease ABC, B subunit [Clostridium botulinum NCTC 2916] gi|170755543|ref|YP_001783024.1| excinuclease ABC subunit B [Clostridium botulinum B1 str. Okra] gi|189037960|sp|A7GIY3|UVRB_CLOBL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|229557959|sp|A7FYY1|UVRB_CLOB1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|229557960|sp|B1IFX3|UVRB_CLOBK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|152927725|gb|ABS33225.1| excinuclease ABC, B subunit [Clostridium botulinum A str. ATCC 19397] gi|152931266|gb|ABS36765.1| excinuclease ABC, B subunit [Clostridium botulinum A str. Hall] gi|152933869|gb|ABS39367.1| excinuclease ABC, B subunit [Clostridium botulinum F str. Langeland] gi|169120755|gb|ACA44591.1| excinuclease ABC, B subunit [Clostridium botulinum B1 str. Okra] gi|182670234|gb|EDT82210.1| excinuclease ABC, B subunit [Clostridium botulinum NCTC 2916] gi|295320723|gb|ADG01101.1| excinuclease ABC, B subunit [Clostridium botulinum F str. 230613] gi|322807710|emb|CBZ05285.1| excinuclease ABC subunit B [Clostridium botulinum H04402 065] Length = 662 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++P+GDQP AI + KGI REK Q L+GVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ LV+ QY+R Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++IFP+ A RV FG++I+ I EF LTG+ I ++ I I+ Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + ++LEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y P+D LLF+DESHVT+PQ+ M GD RK +L EY Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL F+E+ + VSATP +ELE EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDLT+YL E ++ RY+HS++ T+E Sbjct: 423 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+Y D ITKS++ I ET RRR+ Q+E+N++H I P+++ + I EVI + D Sbjct: 543 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEHGIVPKTIIKDIREVIQ---ISD 599 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A D +L ++ ++M AA NL FE+AA +RD I +LK Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655 >gi|328955215|ref|YP_004372548.1| Excinuclease ABC subunit B [Coriobacterium glomerans PW2] gi|328455539|gb|AEB06733.1| Excinuclease ABC subunit B [Coriobacterium glomerans PW2] Length = 745 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/688 (51%), Positives = 470/688 (68%), Gaps = 37/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AIA L++GI ++ Q+LLGVTGSGKT+TMAK IEA+ +PA+VM Sbjct: 25 FEVVSPFEPSGDQPEAIASLVEGIRDNDRYQVLLGVTGSGKTYTMAKTIEALGKPALVME 84 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ SE + FFP+NAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+++ +RH Sbjct: 85 PNKTLAAQVASELREFFPNNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEVEMLRH 144 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL R D IVV+SVSCIYGIGS E Y+ + + +E+ + + +L+ QY R Sbjct: 145 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKTQPLERDDFIHALIDIQYDRN 204 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV GD +++FP + E R FG+++E I+E +TG+ R + I ++ Sbjct: 205 DFDLARGTFRVRGDVVDVFPPYAEH-PLRFEFFGDEVELIAEIDEVTGEITREYDAIPVW 263 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT +P + A+K I+ EL R+ EL+ E +LLEAQRL+QR YDLEMLET G C Sbjct: 264 PASHYVTEKPKVAAALKTIEAELSERVGELKAEDKLLEAQRLQQRTDYDLEMLETMGFCN 323 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D +DESHVT+PQI GM+ GD RK TL E+ Sbjct: 324 GIENYSRHLDGRKPGEPPYTLIDYFPKDMFCIIDESHVTVPQIRGMHEGDRSRKVTLIEH 383 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ P + VSATPG +EL Q VEQIIRPTGL+DP + Sbjct: 384 GFRLPSALDNRPLRFDEFEARIPQFVYVSATPGDYELRVSQN-NVEQIIRPTGLLDPKIS 442 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ DEI A++ R+L+T LTKRMAEDLT++ + ++V YMHS+ TL+ Sbjct: 443 VRPVRGQIDDLLDEIKERAERHERVLVTTLTKRMAEDLTDHFLDAGVKVNYMHSDTATLD 502 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLR G DVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 503 RVEILRDLRRGSIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 562 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AI ET RRR+ Q +N+ H I P++V++ I ++ + + Sbjct: 563 NAGGEVIMYADRITDSMREAIQETARRRDLQERYNEVHGIRPETVRKAINDISS--FISE 620 Query: 741 AA--------------------TTNISIDAQQLSLSKKKGKAH-------------LKSL 767 AA T +QL + + A + ++ Sbjct: 621 AAQSVGRRDRSRGDSLGHGEFFTPTGEGSDEQLDETAGRRLAEELAELPHDDLVRIIATM 680 Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795 + M A++ ++FEEAAR+RD I L++ Sbjct: 681 EEDMKTASEGMDFEEAARLRDGIVHLRA 708 >gi|300781284|ref|ZP_07091138.1| excision endonuclease subunit UvrB [Corynebacterium genitalium ATCC 33030] gi|300532991|gb|EFK54052.1| excision endonuclease subunit UvrB [Corynebacterium genitalium ATCC 33030] Length = 704 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/668 (52%), Positives = 472/668 (70%), Gaps = 14/668 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++++++ PSGDQP AIA+L + + + E +L+G TG+GK+ T A +IE QRP +VM Sbjct: 27 LFEVESEFEPSGDQPTAIAELDRRLRAGEPDVVLMGATGTGKSATAAWLIEQQQRPTLVM 86 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+R Sbjct: 87 APNKTLAAQLATELRALLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLR 146 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSAT +LL R D +VVSSVSCIYG+G+ +SY + L++G+ VE+ L LV QY+R Sbjct: 147 HSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLLLRVGEEVERDRFLRLLVDVQYER 206 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ RGTFRV GD+++I P++ E+VA RV FG++++ + +PLTG ++ E ++I Sbjct: 207 NDVDFKRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDSLYYIHPLTGDVLQQREELRI 265 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + +HYV + A++ IK EL RL ELE G+LLEAQRL R YDLEM++ G C Sbjct: 266 FPATHYVATEDRMEKAIEAIKLELADRLEELENRGKLLEAQRLRMRTEYDLEMIQQVGFC 325 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PG P TL +Y PED L +DESHVT+PQI GMY GD RK L E Sbjct: 326 TGIENYSRHIDGRGPGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMYEGDMSRKRNLVE 385 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL F+E+ T+ +SATPG +ELE G VEQ+IRPTGLVDP V Sbjct: 386 FGFRLPSAVDNRPLTFDEFEDRVGQTVYMSATPGDYELEAAGGEFVEQVIRPTGLVDPKV 445 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++ + Q++D+ EI ++ R+L+T LTKRMAEDLT+Y + I+VRY+HS++ TL Sbjct: 446 TVKPTKGQIDDLIHEIRERTERDERVLVTTLTKRMAEDLTDYFLDNGIQVRYLHSDIDTL 505 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAA Sbjct: 506 QRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAA 565 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 RNV+ +VI+YAD IT+S+Q AIDET RRR KQ+ +NK+H I+PQ +++KI +++D + Sbjct: 566 RNVSGEVIMYADDITESMQEAIDETERRRTKQIAYNKEHGIDPQPLRKKIADILDEVYER 625 Query: 738 -----LEDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D A S + + S++ + + + L QM AA L FE A R+ Sbjct: 626 AEDDTYGDGAKRGSSGEEAMIEGRDTSSMASDEIEKLIADLTTQMTAAARELKFELAGRL 685 Query: 787 RDEIKRLK 794 RDEI L+ Sbjct: 686 RDEIADLR 693 >gi|317506145|ref|ZP_07963968.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974] gi|316255567|gb|EFV14814.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974] Length = 708 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/665 (52%), Positives = 467/665 (70%), Gaps = 12/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP+AIA+L + + + E+ +LLG TG+GK+ T A +IE +QRP +++A Sbjct: 33 FEVVSEHQPAGDQPSAIAELQRRVEAGERDVVLLGATGTGKSATTAWLIERLQRPTLLIA 92 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 93 PNKTLAAQLANELREMLPKNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 152 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D +VV+SVSCIYG+GS +SY V L G V + +LL LV QY R Sbjct: 153 SATRSLLSRRDVVVVASVSCIYGLGSPQSYLDRSVLLVKGQEVARDQLLRLLVDMQYDRN 212 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P++ E+ A R+ FG++I+ +S LTG + V+ ++I+ Sbjct: 213 DVAFTRGTFRVRGDTLEIIPAY-EEFAVRIEFFGDEIDALSYLNKLTGDVVAEVDQVRIF 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVT + M+ I++EL RL LE +G+LLEAQRL R YDLEM++ G C Sbjct: 272 PATHYVTGEGRMAQVMEAIRQELAERLATLEAQGKLLEAQRLRMRTEYDLEMIQQVGFCS 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED L +DESHVT+PQI M+ GD RK L EY Sbjct: 332 GIENYSRHMDGRGPGTAPATLLDYFPEDFLTVIDESHVTVPQIGAMFEGDMARKRNLVEY 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 392 GFRLPSAVDNRPLTWEEFSERVGQTVYLSATPGPYELGQAGGEFVEQVIRPTGLVDPHVV 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL Sbjct: 452 VKPTQGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 512 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AI+ET RRREKQ+ +N + I+P+ +++KI +++D + E Sbjct: 572 NVSGEVHMYADRITDSMRNAIEETERRREKQIAYNLERGIDPKPLRKKIADILDRVYEES 631 Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 A T + K +A + L +QM AA L FE AAR+RDE Sbjct: 632 ADTADAEAKNGKAEKKTAKKKAAGGTPKSDLEALIAELNEQMLSAARELRFELAARLRDE 691 Query: 790 IKRLK 794 + K Sbjct: 692 LAEYK 696 >gi|291301234|ref|YP_003512512.1| excinuclease ABC subunit B [Stackebrandtia nassauensis DSM 44728] gi|290570454|gb|ADD43419.1| excinuclease ABC, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 701 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/677 (52%), Positives = 474/677 (70%), Gaps = 24/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY PSGDQP AI +L + I+ E+ +LLG TG+GK+ T A ++E +QRPA+VMA Sbjct: 14 FTVVSDYEPSGDQPTAITELARRINGDERDVVLLGATGTGKSATAAWLVERLQRPALVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL EF+ P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH Sbjct: 74 HNKTLAAQLAKEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SLL RND +VV++VS IYG+ + + + +K+G+ ++ LL LV+ QY R Sbjct: 134 STMHSLLTRNDVVVVATVSAIYGLVTPTEFYKHTATVKVGEEYDRDSLLRRLVEIQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD+I+I P++ E++A R+ MFG+++E++ PLTG+ +R+V + I+ Sbjct: 194 DYAFTRGTFRVRGDTIDIIPAY-EELAVRIEMFGDEVEKLFYINPLTGEVVRHVTELVIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + YVT A++ I+ EL+ RL ELE++ + LE+QRL R TYDLEM+ GSC Sbjct: 253 PGAAYVTSGENQERAVRDIEAELEERLAELERQSKHLESQRLRMRTTYDLEMIRQIGSCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR+ GEPP TL +Y PE+ + +DESH T+PQI GMY GD RK TL E+ Sbjct: 313 GIENYSRHFDGRSAGEPPYTLLDYFPENFITIIDESHQTVPQIGGMYEGDASRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRF+E+ T+ +SATPG WELEQ +G EQ+IRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLRFDEFRERVGQTVYMSATPGPWELEQAKGQYAEQVIRPTGLVDPQVV 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI A+ R+L+T LTK+MAEDLT+Y + NIRVRY+HSEV TL Sbjct: 433 VRQTKGQIDDLMHEITERAKANERVLVTTLTKKMAEDLTDYFLDNNIRVRYLHSEVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 493 RVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739 NV+ +VI+YAD IT S++ A+DET RRREKQ+ HNK+H I+P ++++I +++D I Sbjct: 553 NVSGQVIMYADKITDSMRKALDETDRRREKQIAHNKEHGIDPTPLRKRIGDILDDIYATA 612 Query: 740 DAATTNISIDAQQLSLSK--------KKGK--------------AHLKSLRKQMHLAADN 777 D T + +Q S K + G + + +L QM AA Sbjct: 613 DDTETLVGGSGRQQSRGKAPVPQTRSRAGAVVASGEGVPREELTSMIATLNDQMLTAARE 672 Query: 778 LNFEEAARIRDEIKRLK 794 L FE AAR RDEI LK Sbjct: 673 LQFEVAARYRDEIAELK 689 >gi|300787966|ref|YP_003768257.1| excinuclease ABC subunit B [Amycolatopsis mediterranei U32] gi|299797480|gb|ADJ47855.1| excinuclease ABC subunit B [Amycolatopsis mediterranei U32] Length = 726 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/689 (52%), Positives = 481/689 (69%), Gaps = 29/689 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 36 FEVVSDYQPAGDQPAAIDELERRIKAGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 95 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + FP+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 96 PNKTLAAQLANELRELFPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 155 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV+SVSCIYG+G+ +SY +LK G +++ L +LV QY R Sbjct: 156 SATMNLLSRRDVIVVASVSCIYGLGTPQSYLDRSSKLKAGMQLDRDVFLRALVDVQYTRN 215 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFR GD++EI P++ E++A RV FG++IE++ +PLTG ++ V+ ++I+ Sbjct: 216 DIAFARGTFRARGDTVEIIPAY-EELAIRVEFFGDEIEKLYYLHPLTGDIVKEVDEVRIF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I++EL+ RL ELE++G+LLEAQRL R YD+EM+ G C Sbjct: 275 PATHYVAGPERMEKAIQGIEKELEERLAELERQGKLLEAQRLRMRTAYDIEMMRQVGFCS 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y P+D LL +DESH T+PQI GMY GD RK L EY Sbjct: 335 GIENYSRHIDGRGPGTAPATLIDYFPDDFLLVIDESHQTVPQIGGMYEGDMSRKRNLVEY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ T+ +SATPG +E+ Q G VEQ+IRPTGLVDP V Sbjct: 395 GFRLPSAVDNRPLTWEEFSDRIGQTVYLSATPGPYEMGQAGGEFVEQVIRPTGLVDPKVV 454 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI A++ R+L+T LTK+M+EDLT+YL E IRVRY+HSEV TL Sbjct: 455 VKPTEGQIDDLVHEIRERAEKDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 514 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 515 RVELLRQLRAGDFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 574 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N++ ++PQ +++KI +++D + E Sbjct: 575 NVSGEVHMYADKITDSMRHAIDETDRRREKQVAYNEERGVDPQPLRKKIADILDRVYSEA 634 Query: 741 AATTNISIDAQQLSLSKKKG----------------------KAHLKSL----RKQMHLA 774 T +S+ + S+ K +A L L QM A Sbjct: 635 EDTEQVSVGGSGRNSSRGKKPEQGDRVRSSGMLVDKNVSAMPRAQLADLIQQMTDQMMQA 694 Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 A +L FE AAR+RDEI LK +G+D Sbjct: 695 ARDLQFELAARLRDEISDLKKE--LRGMD 721 >gi|229916613|ref|YP_002885259.1| excinuclease ABC, B subunit [Exiguobacterium sp. AT1b] gi|229468042|gb|ACQ69814.1| excinuclease ABC, B subunit [Exiguobacterium sp. AT1b] Length = 656 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/654 (52%), Positives = 463/654 (70%), Gaps = 6/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+++ P GDQP AI QL++G++ ++ Q LLG TG+GKTFT++ VI+ +++P +V+A Sbjct: 6 FALQSEFQPGGDQPEAIRQLVEGVNRGDRYQTLLGATGTGKTFTVSNVIQEVKKPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 66 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+G+ E Y +++ L++G + + E+L L+ QY+R Sbjct: 126 SATSALFERDDVIIVASVSCIYGLGNPEEYRSLVLSLRVGKEMGRDEMLRKLIDIQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ R+ FG++I+ I E PLTG+ I + + + I+ Sbjct: 186 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIDRIREMDPLTGEIIADRDHVAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A+ I+ EL+ +L + +EG+LLEAQRLEQR YDLEM+ G C Sbjct: 246 PASHFVTRDEKLQKAIVNIEAELEEQLEKFREEGKLLEAQRLEQRTHYDLEMMREMGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G P TL +Y PED LL DESHVT+PQ+ GMY GD RK L ++ Sbjct: 306 GIENYSRHLNLMPEGSTPYTLLDYFPEDFLLVADESHVTLPQVRGMYNGDQARKQVLVDH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+E+ I +SATPG +ELE +I EQIIRPTGL+DP +E Sbjct: 366 GFRLPSAKDNRPLKFDEFEKKVSQAIFISATPGPYELEHTPNMI-EQIIRPTGLLDPTIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I + Q++ + D+I ++ R+L+T LTK+MAEDL++YL E I+V YMHSE+KTLE Sbjct: 425 IHPIKGQIDYLMDQIRERIKRDERVLVTTLTKKMAEDLSDYLREAGIKVNYMHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLRLGK+DVLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSDRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VIL+AD +T S+ AI+ET RRR Q +N++H I PQ++++ + VI + + Sbjct: 545 NANGHVILFADKMTDSMARAIEETDRRRSIQQAYNEEHGITPQTIRKDVRGVIRATVEAE 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + +A + L ++M AA +L FE AA +RD I LK Sbjct: 605 EEAL-----ESLSTMKPAEREAAIAKLEEEMKQAARDLQFERAAELRDLILELK 653 >gi|186680993|ref|YP_001864189.1| excinuclease ABC subunit B [Nostoc punctiforme PCC 73102] gi|186463445|gb|ACC79246.1| excinuclease ABC, B subunit [Nostoc punctiforme PCC 73102] Length = 683 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/664 (53%), Positives = 461/664 (69%), Gaps = 12/664 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F +Q + P+GDQP AIAQL I S + Q LLG TG+GKTF++A VIE + +P + Sbjct: 19 MTEFCLQAPFSPTGDQPQAIAQLTASIQSGNRYQTLLGATGTGKTFSVAAVIEKIGKPTL 78 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E ++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID Sbjct: 79 VLAHNKTLAAQLCNELRDFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 138 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + L+IG V Q+++L L QY Sbjct: 139 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAIPLQIGMEVNQRQILRDLANVQY 198 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R DI + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ ++++E + Sbjct: 199 SRNDIEMGRGKFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILKSLEAV 257 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A I ELK + ++LE+ G+LLEAQR++QR YDLEML G Sbjct: 258 NIYPARHFVTPEERLEVACHDIAAELKQQKLDLEQAGKLLEAQRIDQRTRYDLEMLREVG 317 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR G+PP L +Y P+D LL +DESHVT+PQI GMY GD RK L Sbjct: 318 YCNGVENYSRHLAGRQAGDPPECLIDYFPKDWLLIIDESHVTVPQIRGMYNGDQARKKVL 377 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS DNRPL+ EE+ I VSATPG+WE+E + ++EQ+IRPTG+VDP Sbjct: 378 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGTWEIEVSEDHVIEQVIRPTGVVDP 437 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R Q++D+ EI A + R+L+T LTKRMAEDLTEYL +R+IRVRY+HSE+ Sbjct: 438 EISVRPTEGQIDDLLGEIKDRADRHERVLITTLTKRMAEDLTEYLQDRSIRVRYLHSEIT 497 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ++ERIEI+++LR GKFDVLVG+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGR Sbjct: 498 SIERIEILQNLREGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRTERSLIQTIGR 557 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR+V + ILYAD +T S+ AIDET RRR Q HN+ H I PQ + +K I L Sbjct: 558 AARHVQGQAILYADNMTGSMIKAIDETDRRRGIQTAHNRLHGITPQPIVKKSSNAILAFL 617 Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D + ID +L L + G L L QM AA L FEEA ++RD I Sbjct: 618 DVSRRLNATDLKVVDEHID--ELPLEQIPGLITL--LEAQMKEAAKKLEFEEAGKLRDRI 673 Query: 791 KRLK 794 K L+ Sbjct: 674 KHLR 677 >gi|124026822|ref|YP_001015937.1| excinuclease ABC subunit B [Prochlorococcus marinus str. NATL1A] gi|189037986|sp|A2C5B3|UVRB_PROM1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|123961890|gb|ABM76673.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. NATL1A] Length = 678 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/671 (53%), Positives = 466/671 (69%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P GDQPAAI L+ G++ EK Q LLG TG+GKTFT+A +I RPA+V+A Sbjct: 4 YKLQAPYTPKGDQPAAIKGLVGGVNDGEKFQTLLGATGTGKTFTIANLIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPDNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER+D IVV+S+SCIYG+G Y + V+ ++G S++ + L SLV QY R Sbjct: 124 SATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFQVGQSIDLRSCLRSLVSNQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FRV GD +EI P++ +D R+ +FG+++E IS P TG+ + +++I IY Sbjct: 184 DIEISRGRFRVRGDVLEIGPAY-DDRLVRLELFGDEVESISYVDPTTGEILNKLDSINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L++A+K IK+ELK RL L +EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQEGKLLEAQRLEQRTIYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR PG P L +Y P+D LL +DESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLR-FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ E WN + T+ +SATPG WEL Q IVEQ+IRPTG++DP V Sbjct: 363 GFRLPSAADNRPLKDIEFWNKAK-QTVFISATPGDWELSQSTKNIVEQVIRPTGVLDPLV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI A + RIL+T LTKRMAEDLT+YL E IRVRY+HSE+ ++ Sbjct: 422 EVRPTHGQVDDLLFEIRKRASKNQRILVTTLTKRMAEDLTDYLSENKIRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LV ILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAQRSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738 R+V +LYAD +T S+ AI ET RRRE Q +N +H I P+ +K I L Sbjct: 542 RHVEGLALLYADKMTDSMAKAISETERRREIQNIYNIEHGITPKPAGKKASNSILSFLEI 601 Query: 739 -----EDAATTNISIDAQQL---SLSKKKGKAHLKS-------LRKQMHLAADNLNFEEA 783 +D +T + A +L S L+S L +M + A +L+FE+A Sbjct: 602 SRRLNQDGSTDDFVDIADKLIEHSAKDSDSGVSLESLPELIEKLESKMKIKAKDLDFEKA 661 Query: 784 ARIRDEIKRLK 794 A +RD IK+L+ Sbjct: 662 AILRDRIKKLR 672 >gi|221195727|ref|ZP_03568781.1| excinuclease ABC, B subunit [Atopobium rimae ATCC 49626] gi|221184493|gb|EEE16886.1| excinuclease ABC, B subunit [Atopobium rimae ATCC 49626] Length = 743 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/682 (51%), Positives = 467/682 (68%), Gaps = 36/682 (5%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 + + P+GDQP AI +L +GI + Q LLGVTGSGKTF+MAK IE + RP ++M PNK Sbjct: 33 SSFEPAGDQPQAIQKLAQGIEEGLRYQTLLGVTGSGKTFSMAKTIEKLNRPTLIMEPNKT 92 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 LAAQ+ SE K FPHNAV YFVSYYDYYQPEAYVP++DTYIEK++SINE+++++RH AT Sbjct: 93 LAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQSDTYIEKDASINEEVEKLRHQATS 152 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 SLL R D IVV+SVSCIYGIGS + Y+ + + +E+ +L+ L+ QY R D + Sbjct: 153 SLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDLIKDLIDIQYDRNDYDL 212 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 RG FRV GD +++FP + E+ R+ FG+++E I+E +TG+ IR + + I+ SH Sbjct: 213 QRGMFRVRGDVVDVFPPYAEN-PLRIEFFGDEVETIAEISNVTGEVIREFDAVPIWPASH 271 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 YVT RP + A++ I EEL+ R+ EL+ +LLEAQRL QR +YDLEMLET G C IEN Sbjct: 272 YVTERPKVTHALQTISEELEHRVAELKANDKLLEAQRLAQRTSYDLEMLETMGYCNGIEN 331 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSR+L GR PGEPP TL +Y P+D + +DESHVT+PQI GMY GD RK TL E+GFRL Sbjct: 332 YSRHLDGRAPGEPPYTLIDYFPKDMICIIDESHVTVPQIRGMYEGDRSRKVTLVEHGFRL 391 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 PS +DNRPLRF+E+ P I VSATPG +E E VEQIIRPTGL+DP VE+R Sbjct: 392 PSALDNRPLRFDEFEARIPQFIYVSATPGDYE-ESVAQQQVEQIIRPTGLLDPSVEVRPI 450 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 R Q++D+ E+ + R+L+T LTKRMAEDLT++L + I+V YMHS+ TL+R+ I Sbjct: 451 RGQIDDLISEVKERVAKKERVLVTTLTKRMAEDLTDHLLDEGIKVNYMHSDTATLDRVAI 510 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I++LR GK DVLVGINLLREGLDIPE LVAILDADKEGFLR++ SLIQT+GRAARN Sbjct: 511 IKELRQGKIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAARNAQG 570 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744 VI+YAD IT S+++AIDET RRRE Q N +H I PQ++ + I ++ I D A Sbjct: 571 SVIMYADRITDSMRIAIDETRRRRELQESFNARHGIVPQTIHKSIADISQFI---DEAAE 627 Query: 745 NI----------------------------SIDA--QQLS-LSKKKGKAHLKSLRKQMHL 773 N+ SI+A ++ S L + + + L L M Sbjct: 628 NVDKRQRKDGIFYTASGEGAETQGAPGEVDSIEAMVEEFSELPRSEVETMLAHLESDMAQ 687 Query: 774 AADNLNFEEAARIRDEIKRLKS 795 A+ ++++E AA++RD+I R++S Sbjct: 688 ASTDMDYERAAQLRDQIVRIRS 709 >gi|116617516|ref|YP_817887.1| excinuclease ABC subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096363|gb|ABJ61514.1| Excinuclease ABC subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 669 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/659 (51%), Positives = 475/659 (72%), Gaps = 7/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI +L+ GI++ K Q+LLG TG+GKTFT++ VI+ +++P +V++ Sbjct: 10 FEIKSKYEPTGDQPKAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+ Sbjct: 70 HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDKLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G E+ +L+ L+ Q+ R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHQYKDHVISLRVGYEYERDQLMRDLIDVQFTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD IEIFP+ +++A R+ FG++I+ I E LTG+ I + + I+ Sbjct: 190 DIDFHRGTFRVRGDVIEIFPASQDEMALRIEFFGDEIDRIREINSLTGETIAERDHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T + A+ I++E+ ++ +KEG+LLEAQR++QR YDL MLE G Sbjct: 250 PAKHFMTDDDQMQVALDGIRQEMNTQVELFKKEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESHVT+PQI GM+ GD RK TL Y Sbjct: 310 GIENYSRWMDGRQAGEPPFTLIDFFPDDFLIVIDESHVTMPQIRGMFNGDKARKETLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI-IVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +E E+ +++QIIRPTGL+DP V Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYENERVDSKHVIQQIIRPTGLLDPEV 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EI +++ R+ +T LTKRMAEDLT+YL + I+V Y+H+++KTL Sbjct: 430 EVRPVMGQIDDLVGEITKRSERDERVFITTLTKRMAEDLTDYLKDLGIKVAYLHADIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLGK+DVL+GINLLREG+D+PE LVAILDADKEGFLR+ SLIQTIGRAA Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD +T+S+ AIDET RRRE Q+++N +H I P+++K+ I ++I + Sbjct: 550 RNENGHVIMYADKMTRSMLEAIDETARRREIQMQYNTQHGITPKTIKKDIRDLIS---VT 606 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AAT +D +++ L K + ++ + ++ QM AA L+FEEAA++RD + LK+ Sbjct: 607 HAATEEKVVDLTKVAFNDLPKDEQQSIVDNMTSQMKAAAKALDFEEAAQLRDTVMELKT 665 >gi|119961329|ref|YP_947815.1| excinuclease ABC subunit B [Arthrobacter aurescens TC1] gi|189037972|sp|A1R6F3|UVRB_ARTAT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|119948188|gb|ABM07099.1| excinuclease ABC, B subunit [Arthrobacter aurescens TC1] Length = 699 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/677 (51%), Positives = 473/677 (69%), Gaps = 26/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AIA+L + I++ EK +LLG TG+GK+ T A +IE +QRP +VM Sbjct: 14 FEVISEFKPAGDQPTAIAELTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV++VSCIYG+G+ E Y +V L+ G + + LL V QY R Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDHLLRKFVSMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTG+ +R+ E + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIQTLHPLTGEVLRDEEEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I++EL RL LE + +L+EAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGPERMARAIKRIEDELADRLKVLEGQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GRNPG P L +Y P+D LL VDESHVTIPQI MY GD RK L ++ Sbjct: 313 GIENYSVHIDGRNPGTAPHCLIDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRNLVDF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL + G V+QIIRPTGL+DP V Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKADGY-VQQIIRPTGLIDPEVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTKRMAEDLT+YL ++V Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLGEIRTRTEKNERVLVTTLTKRMAEDLTDYLVGHGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AI+ET RRR Q+++N H I+PQ +++KI ++ D + ED Sbjct: 552 NVSGQVHMYADRITDSMAHAIEETNRRRAIQVQYNTDHGIDPQPLRKKIADITDQLAKED 611 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-----------------------LRKQMHLAADN 777 A T + ++ +L+ K+GK+ K L +QMH AA Sbjct: 612 ADTQEL-LNNNRLAKGGKRGKSAAKGAATVRQDGLAAAPAEDLVGLIEQLTEQMHGAAAE 670 Query: 778 LNFEEAARIRDEIKRLK 794 L FE AARIRDE+K LK Sbjct: 671 LQFEVAARIRDEVKELK 687 >gi|323340188|ref|ZP_08080452.1| excision endonuclease subunit UvrB [Lactobacillus ruminis ATCC 25644] gi|323092379|gb|EFZ34987.1| excision endonuclease subunit UvrB [Lactobacillus ruminis ATCC 25644] Length = 665 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/655 (53%), Positives = 468/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L GI + E Q+LLG TG+GKTFT++ VI + +P +V+A Sbjct: 10 FELCSSYKPTGDQPEAIAELTAGIKAGEHAQILLGATGTGKTFTISNVIANVNKPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LLERND IVV+SVSCI+G+G Y Q + L + + LL LV+ Q++R Sbjct: 130 AATSALLERNDVIVVASVSCIFGLGDPSEYQQQALSLHVDQEYGRDRLLRELVEIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD ++IFP+ + A R+ FG+DI+ I EF PLTG+ + + + + I+ Sbjct: 190 DIDFQRGRFRVRGDVVDIFPASSDSSALRIEFFGDDIDRICEFNPLTGEIVTDTDKVTIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A++ I++ELK RL EL +G+LLEAQRLEQR TYD+EM+ G C Sbjct: 250 PATHFLTNDDRMKQALEGIEKELKERLEELRAQGKLLEAQRLEQRTTYDIEMMREMGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS+Y+ R P TL ++ P+D LL VDESHVT+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSKYMDNRQMNR-PFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKQMLVDY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRL S +DNRPL+ EE+ L I +SATPG +E +Q IV+QIIRPTGL+DP +E Sbjct: 369 GFRLKSALDNRPLKLEEFEKLTNQIIYMSATPGDYEKKQTDH-IVQQIIRPTGLLDPEIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+YL E I+V+Y+HS++KTLE Sbjct: 428 VRPIMGQMDDLVGEINKRTEKNERVFVTTLTKKMAEDLTDYLKELGIKVKYLHSDIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R I+RDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 488 RTRIVRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD +T+S++ AIDET RRRE Q+++N++ I PQ++K++I I Sbjct: 548 NANGHVIMYADEVTESMKAAIDETKRRREIQMKYNQERGIVPQTIKKEIRAAISYGDKVS 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + D LS+K + + L +QM AA L+FEEAAR+RD + LK+ Sbjct: 608 KKSKKKTEDFDFNDLSQKDQQEMISGLEEQMREAAKKLDFEEAARLRDTVLELKA 662 >gi|254431082|ref|ZP_05044785.1| excinuclease ABC, B subunit [Cyanobium sp. PCC 7001] gi|197625535|gb|EDY38094.1| excinuclease ABC, B subunit [Cyanobium sp. PCC 7001] Length = 671 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/660 (54%), Positives = 457/660 (69%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y P GDQP AIA L+ G+ E+ Q LLG TG+GKTFT+A VI RP +V+A Sbjct: 7 FQLHAPYAPKGDQPTAIAGLVGGVEGGERYQTLLGATGTGKTFTIANVIARTGRPTLVLA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 67 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V ++GD++ + L LV QY R Sbjct: 127 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVTFQVGDTLNLRGSLRELVNNQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++ETI IY Sbjct: 187 DLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A++ I+ EL+ RL L +GRLLEAQRLEQR TYDLEMLE G C Sbjct: 246 PAKHFVTPKERLQEAIQAIRAELRERLDVLNGQGRLLEAQRLEQRTTYDLEMLEQVGYCN 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 306 GVENYARHLAGREAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDQSRKQVLIEH 365 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ EE W R TI VSATPG+WELEQ G +VEQ+IRPTG++DP V Sbjct: 366 GFRLPSAADNRPLKGEEFWQKAR-QTIFVSATPGNWELEQSHGQVVEQVIRPTGVLDPVV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI + A + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++ Sbjct: 425 EVRPTEGQVDDLLGEIRVRADRQERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHSI 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 485 ERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 R+V +LYAD +T S+ AI+ET RRR Q +N+KH I P + ++ I L Sbjct: 545 RHVEGVALLYADNLTDSMAKAIEETERRRGIQQAYNEKHGITPTAAGKRAGNAILAFLEV 604 Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L D + A+ + ++ L ++M AA NL FEEAA +RD IK L+ Sbjct: 605 SRRLNDEQLEQATEQAEHNGVPLDSLPELIQQLEEKMKTAAKNLEFEEAANLRDRIKGLR 664 >gi|113476281|ref|YP_722342.1| excinuclease ABC subunit B [Trichodesmium erythraeum IMS101] gi|110167329|gb|ABG51869.1| Excinuclease ABC subunit B [Trichodesmium erythraeum IMS101] Length = 677 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/662 (53%), Positives = 464/662 (70%), Gaps = 14/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P+GDQP AIAQL I + Q LLG TG+GKTF++A VIE + RP +V+A Sbjct: 15 FCLQAPFQPTGDQPQAIAQLTTNIQAGHNFQTLLGATGTGKTFSIASVIENVGRPTLVLA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E ++FFP N+VEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +RH Sbjct: 75 HNKTLAAQLCNELRDFFPDNSVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + + L++G+ + Q+++L L QY R Sbjct: 135 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAISLQVGEEINQRQILRDLATVQYTRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG ++++E++ +Y Sbjct: 195 DLNLGRGKFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGNILQSLESLNVY 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A I+ EL RL ELEK G+LLEAQRLEQR YD+EML G C Sbjct: 254 PARHFVTPEERLEIACNDIEVELDERLKELEKAGKLLEAQRLEQRSRYDIEMLREVGYCN 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR GEPP L +Y P+D LL +DESHVT+PQI GMY GD RK L E+ Sbjct: 314 GVENYSRHLVGRKAGEPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVLVEH 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I+VSATPG+WE+E+ + IVEQIIRPTG+VDP + Sbjct: 374 GFRLPSATDNRPLKSEEFWEKVNQCILVSATPGNWEIEKSEDRIVEQIIRPTGVVDPKIF 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTKRMAEDLTEYL +++++VRY+HSE+ +++ Sbjct: 434 VRPTEGQIDDLLGEIRERVKLEERVLITTLTKRMAEDLTEYLEDQSVKVRYLHSEINSIK 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++ LR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 494 RIEILQGLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILYAD +T S+ AIDET RRR QL +NK +NI P+ V +K I L Sbjct: 554 HIRGQAILYADNLTDSMIKAIDETERRRGIQLAYNKMNNITPRPVVKKQSNAILAFL--- 610 Query: 741 AATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 + +++QQL +LS +K L QM AA NL FEEAA++RD IK Sbjct: 611 --DVSRRLNSQQLEEVYEQVDNLSLDDVPEWIKKLESQMKEAAKNLEFEEAAKLRDRIKH 668 Query: 793 LK 794 L+ Sbjct: 669 LR 670 >gi|22299576|ref|NP_682823.1| excinuclease ABC subunit B [Thermosynechococcus elongatus BP-1] gi|81844844|sp|Q8DHC6|UVRB_THEEB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|22295760|dbj|BAC09585.1| excinuclease ABC subunit B [Thermosynechococcus elongatus BP-1] Length = 668 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/660 (54%), Positives = 457/660 (69%), Gaps = 6/660 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ + P+GDQP AI +L+ G+ + + Q LLG TG+GKT T+A+VIEA+ RP +V Sbjct: 4 TPFRIHAPFEPTGDQPQAIQKLVAGVQAGHRFQTLLGATGTGKTHTIARVIEALGRPTLV 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQL +E ++FFP NAVEYF+SYYDYYQPEAY+P TDTYIEK +SINE+ID + Sbjct: 64 LAHNKTLAAQLCNELRSFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKSASINEEIDML 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSATRSL ER D IVV+S+SCIYG+G Y + + L++G E ++LL L QY Sbjct: 124 RHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLEVGRETELRQLLRQLATIQYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ + RG FRV GD +EI P++ ED RV FG++IE I PLTG+ +++VE + Sbjct: 184 RNDVELGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIEAIRYVDPLTGETLQSVERLN 242 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY H+VTP L A I+ EL+ ++ LE + +LLEAQRL QR YDLEML G Sbjct: 243 IYPAKHFVTPAERLEAACVAIEAELQAQVANLEAQNKLLEAQRLSQRTRYDLEMLRQVGY 302 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C +ENYSR+L GR GEPP L +Y PE+ LL VDESHVT+PQI GMY GD RK L Sbjct: 303 CNGVENYSRHLAGRAAGEPPECLIDYFPENWLLVVDESHVTVPQIRGMYNGDQARKKVLI 362 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS DNRPL+ EE+ I VSATPG WEL +VEQIIRPTG+VDP Sbjct: 363 DHGFRLPSAADNRPLKPEEFWQKVQQCIFVSATPGDWEL-AVSTQVVEQIIRPTGVVDPE 421 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + +R + QV+D+Y EI L + R+L+T LTKRMAEDLTEY ER +RVRY+HSE+ Sbjct: 422 IFVRPTQGQVDDLYGEIRLRCDRQERVLVTTLTKRMAEDLTEYFQERGVRVRYLHSEINA 481 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ERIEI+ LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRA Sbjct: 482 IERIEILEALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 541 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVID 734 AR+V + ILYADT+T+S+Q AI ET RRR QL +N+ H I PQ + +K I+ +D Sbjct: 542 ARHVRGQAILYADTLTESMQKAIQETERRRAIQLAYNQAHGIIPQPIVKKTSNAILAFLD 601 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +A + + LS + ++ L +M AA L FEEAAR RD+IKRL+ Sbjct: 602 VSRRLNAESVPVLSSQTLQDLSLEDIPPLIQDLEAKMKAAAQELAFEEAARYRDQIKRLR 661 >gi|257438383|ref|ZP_05614138.1| excinuclease ABC subunit B [Faecalibacterium prausnitzii A2-165] gi|257199214|gb|EEU97498.1| excinuclease ABC subunit B [Faecalibacterium prausnitzii A2-165] Length = 685 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/654 (52%), Positives = 461/654 (70%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QL++G+ ++ Q LLGVTGSGKTFTMA VI RP +V+A Sbjct: 6 FHLVSNYAPTGDQPQAIEQLVEGVERGDRCQTLLGVTGSGKTFTMANVIARCNRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH Sbjct: 66 HNKTLAAQLCTEFRSFFPDNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +G Y M++ L+ G +E+ +L LV QY+R Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDDLCKKLVTLQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IR FRV GD+++I+ +++ D+A RV FG++I+ I+EF P+TG + V+ + I+ Sbjct: 186 DINFIRNKFRVHGDTVDIYLAYMSDLAIRVEFFGDEIDRITEFNPVTGTRQNVVKHVAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ A++ I+ E ++ + EG+L+EAQR++QR YD+EML G C+ Sbjct: 246 PASHYIVSADKKAAAIEKIRAECDEQVKKFTAEGKLIEAQRIQQRTNYDIEMLTEVGICK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR PG P TL +Y PED LLFVDESHVT+PQ+ MY GD+ RK TL EY Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE + VSATPG +E I +Q+IRPTGL+DP + Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMVFVSATPGEYERRNSTR-IAQQVIRPTGLLDPLIS 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV D+ EIN + R+L+T LTK+MAEDLT++L E+ I+V+YMH EV T E Sbjct: 425 VRPVEGQVTDLLGEINARTAKNERVLVTTLTKKMAEDLTDFLTEQGIKVKYMHHEVDTFE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLRLG DV+VGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q+ +N++H I P+++ + + D I + D Sbjct: 545 NAEGLVIMYADEVTDSMERAITETERRRAIQMAYNEEHGIVPKTI---VKAIADSIEISD 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A N + ++ + K + +A ++ L ++M AA L FE AA +RD+I RL+ Sbjct: 602 KA-ENAKRNTRR--MGKLEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652 >gi|298694090|gb|ADI97312.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus ED133] gi|323441393|gb|EGA99051.1| excinuclease ABC subunit B [Staphylococcus aureus O46] Length = 661 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|227893198|ref|ZP_04011003.1| excinuclease ABC subunit B [Lactobacillus ultunensis DSM 16047] gi|227864967|gb|EEJ72388.1| excinuclease ABC subunit B [Lactobacillus ultunensis DSM 16047] Length = 682 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/659 (51%), Positives = 466/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQQQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND +VV+SVSCIYG+G + Y++ ++ + G+ E+ LL LV QY R Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYERNTLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSDHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELARTNH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMRILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YADTIT S++ AI T RRR+ Q E NK+H I P+++ + I +VI D Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQKEFNKEHGITPKTIIKPIQDVISITKPTD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + S L+ L+ K+ K +K+L++QM AA L+FEEAA +RD I L+SS Sbjct: 609 DSKKEKSDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667 >gi|170760480|ref|YP_001788716.1| excinuclease ABC subunit B [Clostridium botulinum A3 str. Loch Maree] gi|238688800|sp|B1L280|UVRB_CLOBM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|169407469|gb|ACA55880.1| excinuclease ABC, B subunit [Clostridium botulinum A3 str. Loch Maree] Length = 662 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 463/656 (70%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++P+GDQP AI + KGI EK Q L+GVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKVISKFNPTGDQPKAIKSIAKGIEKGEKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ LV+ QY+R Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++IFP+ A R+ FG++I+ I EF LTG+ I ++ I I+ Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAVRIEFFGDEIDRIKEFDVLTGETITKLKHISIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + ++LEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSKDRLEIAIKNIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y P+D LLF+DESHVT+PQ+ M GD RK +L EY Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL F+E+ + VSATP +ELE EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSAN-TAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDLT+YL E ++ RY+HS++ T+E Sbjct: 423 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+Y D ITKS++ I ET RRR+ Q+EHN+KH I P+++ + I EVI + D Sbjct: 543 NSESKVIMYGDVITKSMEKTIRETNRRRKIQMEHNEKHGIVPKTIIKDIREVIQ---ISD 599 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A D +L ++ ++M AA NL FE+AA +RD I +LK Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655 >gi|87301622|ref|ZP_01084462.1| excinuclease ABC subunit B [Synechococcus sp. WH 5701] gi|87283839|gb|EAQ75793.1| excinuclease ABC subunit B [Synechococcus sp. WH 5701] Length = 668 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/659 (53%), Positives = 454/659 (68%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q Y P GDQP AI L+ G+ + E+ Q LLG TG+GKTFT+A VI RPA+V+A Sbjct: 4 FELQAPYEPKGDQPTAIEALVDGVDAGERYQTLLGATGTGKTFTIANVIARTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 124 SATRSLFERQDVIVVASISCIYGLGIPSEYLKAAVRFQVGEALNLRGSLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++ETI IY Sbjct: 184 DVEVGRGRFRVKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ I++EL RL L +GRLLEAQRLEQR TYDLEML+ G C Sbjct: 243 PAKHFVTPKDRLESAIAAIRDELHQRLDVLHGQGRLLEAQRLEQRTTYDLEMLQQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLAGRPAGTPPECLIDYFPDDWLLVVDESHVTCSQLHAMYNGDQARKQVLVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ E+ TI VSATPG+WE+EQ G + +Q+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKAAEFWSKARQTIFVSATPGTWEMEQSHGHVAQQVIRPTGVLDPVVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI L A + R L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++E Sbjct: 423 VRPTEGQVDDLLGEIRLRAGRDERTLITTLTKRMAEDLTDYLAENGVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR G+FD LVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRNGEFDALVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V+ +LYAD +T S+ AI ET RRR Q +N+ H I P + ++ I L Sbjct: 543 HVDGTALLYADNLTDSMARAISETERRRAIQQTYNETHGIIPSAAGKRAGNAILSFLEVS 602 Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D A T + A + + L +M AA NL FEEAA +RD IK+L+ Sbjct: 603 RRAQDEAPTAEAEPASFAMVPLDALPELILELEDKMKAAAKNLEFEEAANLRDRIKKLR 661 >gi|304407653|ref|ZP_07389304.1| excinuclease ABC, B subunit [Paenibacillus curdlanolyticus YK9] gi|304343136|gb|EFM08979.1| excinuclease ABC, B subunit [Paenibacillus curdlanolyticus YK9] Length = 667 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/655 (54%), Positives = 462/655 (70%), Gaps = 1/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L++GI + + Q LLG TG+GKT+T+A I + RP +V+A Sbjct: 11 FKLLSDYKPQGDQPGAIRELVEGIDNGLRYQTLLGATGTGKTYTIANTIAKLNRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP NAV YFVSYYDY+QPEAY+P TDTYIEK+SSIN++ID++RH Sbjct: 71 HNKTLAAQLCSEFQEFFPENAVSYFVSYYDYFQPEAYIPSTDTYIEKDSSINDEIDKLRH 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D IVV+SVSCIYG+GS Y +++ L++G + +L LV QY+R Sbjct: 131 SATSSLFERRDVIVVASVSCIYGLGSPTEYGSLVLSLRVGMEKPRDAILHKLVDIQYQRN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRGTFRV GD IEIFP + A RV +FG++IE I+E LTG+ + + I I+ Sbjct: 191 DINFIRGTFRVRGDIIEIFPVANNERAIRVELFGDEIERITEIDVLTGEILGERDHIAIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT T+ A+ I+ EL+ RL EL + +LLEAQRLEQR YD+EM++ G C Sbjct: 251 PASHFVTQEETMKRALVNIERELEERLAELRGQNKLLEAQRLEQRTRYDIEMMQEMGFCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L E+ Sbjct: 311 GIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKEVLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPLRFEE+ I VSATPG +ELE C +VEQIIRPTGLVDP +E Sbjct: 371 GFRLPSAMDNRPLRFEEFEEKAGQMIYVSATPGPYELEHCP-TMVEQIIRPTGLVDPIIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTK+MAEDLT+YL + I+VRYMHS++KTLE Sbjct: 430 VRPTKGQIDDMLGEIRARIAKDERVLVTTLTKKMAEDLTDYLKDVGIKVRYMHSDIKTLE 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLG F VLVGINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVTLVTILDADKEGFLRSERSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+Y D IT S+ AI ET RRR QL +N+KH I PQ++++KI VI+ + + Sbjct: 550 NSEGRVIMYGDKITDSMDKAIKETERRRSIQLAYNEKHGITPQTIRKKIHSVIEATKVAE 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ +SKK ++ ++ L +M AA NL FE AA +RD + L++ Sbjct: 610 QKADYLTGVNAGGKMSKKDRQSVIQRLEAEMKDAAKNLQFERAAELRDALLELRA 664 >gi|119509060|ref|ZP_01628211.1| excinuclease ABC subunit B [Nodularia spumigena CCY9414] gi|119466226|gb|EAW47112.1| excinuclease ABC subunit B [Nodularia spumigena CCY9414] Length = 665 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/661 (53%), Positives = 456/661 (68%), Gaps = 6/661 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F +Q + P+GDQP AIAQL I S + Q LLG TG+GKTF++A VIE + RP + Sbjct: 1 MTGFCLQAPFIPTGDQPQAIAQLTSSIQSGNRYQTLLGATGTGKTFSIAAVIEKVGRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P +DTYIEK SSIN++ID Sbjct: 61 VLAHNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVSDTYIEKTSSINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + +IG V Q+++L L QY Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPFQIGMEVNQRQILRDLASVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R DI + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ IR++E + Sbjct: 181 SRNDIEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIIRSLEAV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y H+VTP+ L A I ELK + ELE+ G+LLEAQR++QR YDLEML G Sbjct: 240 NVYPARHFVTPQERLEIACDEIAAELKQQQAELEQAGKLLEAQRIDQRTRYDLEMLREVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR G PP L +Y P+D LL +DESHVT+PQI GMY GD RK L Sbjct: 300 FCNGVENYSRHLAGRQAGAPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS DNRPL+ EE+ I VSATPG WELE +G I +QIIRPTG++DP Sbjct: 360 IDHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGDWELEISEGHIADQIIRPTGVIDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R Q++D+ EI R+L+T LTKRMAEDLTEYL + NI+VRY+HSE+ Sbjct: 420 EISVRPTEGQIDDLLGEIKDRVDLQERVLITTLTKRMAEDLTEYLQDHNIKVRYLHSEIN 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ++ERIEI++DLR GKFDVLVG+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGR Sbjct: 480 SIERIEILQDLRAGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVI 733 AAR++ + I+YAD +T S+ AIDET RRR Q+ +N+ H I PQ + ++ I+ + Sbjct: 540 AARHIRGQAIMYADNMTGSMIKAIDETDRRRGIQMAYNRTHGITPQPIIKRSSNAILSFL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 D +A + +D L ++ + L QM AA L FEEA ++RD IK L Sbjct: 600 DVSRRLNATDLKV-VDEHIDELPLEEIPGLIGKLEAQMKDAAKKLEFEEAGKLRDRIKHL 658 Query: 794 K 794 + Sbjct: 659 R 659 >gi|293192757|ref|ZP_06609652.1| excinuclease ABC subunit B [Actinomyces odontolyticus F0309] gi|292820004|gb|EFF79002.1| excinuclease ABC subunit B [Actinomyces odontolyticus F0309] Length = 689 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/674 (51%), Positives = 473/674 (70%), Gaps = 22/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L I E+ +L+G TG+GK+ T A +IE +QRPA+V+ Sbjct: 8 FEVISPYTPSGDQPKAIRELAARIRDGEQDAVLMGATGTGKSATTAWLIEELQRPALVLE 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 68 PNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y +++L+ G +++ LL V QY R Sbjct: 128 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDALLRRFVAMQYVRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEI P + E++A R+ MFG++IE ++ +PLTG I +V+ ++ Sbjct: 188 DLAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIESLAVLHPLTGDVIDHVDHTYLF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL RL + +LLE QRL R T+DLEML+ GSC Sbjct: 247 PASHYVAGEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLKEIGSCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI M+ GD RK TL +Y Sbjct: 307 GVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +ELE+ G+ VEQIIRPTGLVDP V Sbjct: 367 GFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDGV-VEQIIRPTGLVDPLVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +++ + ++ R+L+T LTK+MAE+LT YL ER ++V Y+HS+V TL Sbjct: 426 VKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSDVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T S+ AI ET RRRE Q+ +NK+H I+PQ +++KI +V D + E Sbjct: 546 NVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTDMLAREQ 605 Query: 741 AATTNISIDAQQLSLSKKK-------GKAHLKSLR-------------KQMHLAADNLNF 780 T + + SK++ G+A + R QM +AA +L F Sbjct: 606 VDTQTLLEGGYRKEKSKRERSDATGGGRAVISGQRAEAELAELIEELSAQMMIAAQHLQF 665 Query: 781 EEAARIRDEIKRLK 794 E AAR+RDEI+ LK Sbjct: 666 EVAARLRDEIEDLK 679 >gi|49483015|ref|YP_040239.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MRSA252] gi|57650099|ref|YP_185697.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus COL] gi|257424878|ref|ZP_05601305.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427546|ref|ZP_05603945.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430177|ref|ZP_05606561.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus 68-397] gi|257432878|ref|ZP_05609238.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus E1410] gi|257435782|ref|ZP_05611830.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M876] gi|258452966|ref|ZP_05700960.1| excinuclease ABC subunit B [Staphylococcus aureus A5948] gi|262049542|ref|ZP_06022412.1| excinuclease ABC subunit B [Staphylococcus aureus D30] gi|282903388|ref|ZP_06311279.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus C160] gi|282905168|ref|ZP_06313025.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Btn1260] gi|282910404|ref|ZP_06318208.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913599|ref|ZP_06321388.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282918551|ref|ZP_06326288.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282923517|ref|ZP_06331197.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus C101] gi|283957590|ref|ZP_06375043.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus A017934/97] gi|293500643|ref|ZP_06666494.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509591|ref|ZP_06668302.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M809] gi|293524177|ref|ZP_06670864.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|294850544|ref|ZP_06791272.1| excinuclease ABC [Staphylococcus aureus A9754] gi|295427335|ref|ZP_06819970.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16] gi|56749752|sp|Q6GIN3|UVRB_STAAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|71153394|sp|Q5HHR0|UVRB_STAAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|49241144|emb|CAG39822.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MRSA252] gi|57284285|gb|AAW36379.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus COL] gi|257272448|gb|EEV04571.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275739|gb|EEV07212.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279374|gb|EEV09975.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus 68-397] gi|257282293|gb|EEV12428.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus E1410] gi|257284973|gb|EEV15092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M876] gi|257859477|gb|EEV82331.1| excinuclease ABC subunit B [Staphylococcus aureus A5948] gi|259162378|gb|EEW46950.1| excinuclease ABC subunit B [Staphylococcus aureus D30] gi|282314385|gb|EFB44775.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus C101] gi|282317685|gb|EFB48057.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282322631|gb|EFB52953.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282325796|gb|EFB56104.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282331575|gb|EFB61087.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Btn1260] gi|282596343|gb|EFC01304.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus C160] gi|283791041|gb|EFC29856.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus A017934/97] gi|290921140|gb|EFD98201.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095648|gb|EFE25909.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467688|gb|EFF10203.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus M809] gi|294822623|gb|EFG39064.1| excinuclease ABC [Staphylococcus aureus A9754] gi|295128723|gb|EFG58354.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16] gi|329313479|gb|AEB87892.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus T0131] Length = 663 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|317153518|ref|YP_004121566.1| excinuclease ABC subunit B [Desulfovibrio aespoeensis Aspo-2] gi|316943769|gb|ADU62820.1| excinuclease ABC, B subunit [Desulfovibrio aespoeensis Aspo-2] Length = 666 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/662 (51%), Positives = 461/662 (69%), Gaps = 12/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI QL G+ + + Q+LLG TG+GKTFTMA V+ + RPA+V+A Sbjct: 4 FRLVSEFTPKGDQPDAIDQLAAGLGAGVRDQVLLGATGTGKTFTMANVVARLDRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF+ FP NAVEYFVSYYDYYQPEAY+P +D YIEK+SSIN+ ID++RH Sbjct: 64 PNKTLAAQLYTEFRGLFPDNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D ++V+SVSCIYG+GS + Y++M++ ++ G ++ + LL LV+ Y+R Sbjct: 124 AATHALLTRRDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQAMTMESLLGRLVEIHYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EI P++ + A R+ FG++IE +SE PLTG+ + IY Sbjct: 184 DYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIESLSETDPLTGEVRDRLRKTVIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+V+ R L+ A + I++EL+ RL E + RL+EAQRLEQR YDLE++E G C Sbjct: 244 PGSHFVSDRDNLDRAARDIRDELQRRLAEFKAGNRLVEAQRLEQRTMYDLEIIEELGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR+ +PP TL +Y P+D +LFVDESH+ +PQ+ GM++GD RK TL ++ Sbjct: 304 GIENYSRHLDGRSKDQPPATLLDYFPKDFILFVDESHIALPQVGGMFKGDRSRKTTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ + VSATPG EL+ QG++VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLNYEEFQARIGQAVYVSATPGHLELDLAQGVVVEQIIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E + R+L+T LTKRMAEDL EYL + RY+HS++ TLE Sbjct: 424 VRKVQGQIDDLLTECKKRQARDERVLVTTLTKRMAEDLNEYLNSMGVPSRYLHSDIDTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II+ LR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS SLIQT GRAAR Sbjct: 484 RMAIIQALRAGEFFVLVGINLLREGLDIPEVSLVTILDADKEGFLRSARSLIQTFGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V+LYAD IT+S+ A+DET RRRE+Q HN+ H I P ++++++ L D Sbjct: 544 NVDGRVVLYADGITRSMAEAMDETARRRERQQAHNEAHGITPTTIRKEMGN-----LFAD 598 Query: 741 -------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A +I+ S K+ +K L +QM AA L FE AA +RD + + Sbjct: 599 KSEARPQGAGRLPAIEGVPAGTSVKEMHTLVKQLERQMREAARELEFERAAALRDRVALI 658 Query: 794 KS 795 + Sbjct: 659 RG 660 >gi|302332467|gb|ADL22660.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus JKD6159] Length = 661 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNDRVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|21282449|ref|NP_645537.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MW2] gi|49485630|ref|YP_042851.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MSSA476] gi|23822291|sp|Q8NXM0|UVRB_STAAW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|56749723|sp|Q6GB72|UVRB_STAAS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|21203886|dbj|BAB94585.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MW2] gi|49244073|emb|CAG42499.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MSSA476] Length = 663 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|256825138|ref|YP_003149098.1| excinuclease ABC subunit B [Kytococcus sedentarius DSM 20547] gi|256688531|gb|ACV06333.1| Excinuclease ABC subunit B [Kytococcus sedentarius DSM 20547] Length = 705 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/694 (50%), Positives = 482/694 (69%), Gaps = 33/694 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ ++Y P+GDQP AIA+L + I + E+ +LLG TG+GK+ T A +IE Sbjct: 4 VTDLQRSVAPFEVVSEYDPAGDQPTAIAELTRRIEAGEQDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +V+L +G ++++ELL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLHVGQEMDREELLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V QY R D+ RGTFRV GD++EI P + E++A R+ FG++IE ++ PLTG+ Sbjct: 184 KFVTMQYTRNDMAFQRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIEAVATLNPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +R+ + + I+ +HYV + A+ I+ EL+ +L E++G+LLEAQRL R TYD+ Sbjct: 243 VRDEQEMYIFPATHYVAGPERMEKAISRIETELEQQLERFEQQGKLLEAQRLRMRTTYDV 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS ++ GR PG P L +Y PED LL +DESHVT+PQI M+ GD Sbjct: 303 EMMREMGSCNGIENYSLHIDGREPGSAPNCLLDYFPEDFLLVLDESHVTVPQIGAMFEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS MDNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 MSRKRTLVDHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGDYELAKSDG-YVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ + Q++D+ EI A++ R+L+T LTK+MAEDLT+YL ER +RVR Sbjct: 422 PTGLVDPEIVVKPTQGQIDDLLAEIRERAERNERVLVTTLTKKMAEDLTDYLLERQVRVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL RIE++++LRLG++DVLVGINLLREGLD+PE LV+ILDADK+GFLRS S Sbjct: 482 YLHSEVDTLRRIELLKELRLGEYDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSNRS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T+S+Q AIDET RRR Q+ HN +H I+P +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTESMQYAIDETNRRRAVQIAHNTEHGIDPTPLRKKIG 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSL-SKKKGKAH-------------------------- 763 ++ + +L+E A+ + ++G+A Sbjct: 602 DITE-MLVEMQGLAGTWEGAEDPGRPTGRRGRAEAQDADVAADLAVATGDRPTDMPRAEL 660 Query: 764 ---LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L QMH AA L FE A R+RDEI L+ Sbjct: 661 AQLIQQLSDQMHTAASQLQFELAGRLRDEIADLR 694 >gi|87160625|ref|YP_493443.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509027|ref|YP_001574686.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141224|ref|ZP_03565717.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731387|ref|ZP_04865552.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|284023780|ref|ZP_06378178.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus 132] gi|304381621|ref|ZP_07364271.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87126599|gb|ABD21113.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367836|gb|ABX28807.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724912|gb|EES93641.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|269940335|emb|CBI48712.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus TW20] gi|283470051|emb|CAQ49262.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus ST398] gi|302750655|gb|ADL64832.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339984|gb|EFM05928.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196435|gb|EFU26786.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus CGS01] gi|320139907|gb|EFW31768.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MRSA131] gi|320142002|gb|EFW33830.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MRSA177] gi|329723820|gb|EGG60348.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 21189] gi|329729697|gb|EGG66098.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 21193] Length = 661 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|239917621|ref|YP_002957179.1| Excinuclease ABC subunit B [Micrococcus luteus NCTC 2665] gi|281413888|ref|ZP_06245630.1| excinuclease ABC subunit B [Micrococcus luteus NCTC 2665] gi|261260087|sp|P10125|UVRB_MICLC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|239838828|gb|ACS30625.1| Excinuclease ABC subunit B [Micrococcus luteus NCTC 2665] Length = 709 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/688 (51%), Positives = 474/688 (68%), Gaps = 36/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + + + EK +L+G TG+GK+ T A ++E +QRP +VM Sbjct: 14 FEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G +++ LL V+ QY R Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTGQ +R E + I+ Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL ELE + +LLEAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P L +Y P+D LL VDESHVTIPQI MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG++EL Q G VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ ++I + + R+L+T LTKRMAEDLT+YL E ++V Y+HS+V TL Sbjct: 432 VKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YA +T S++ AI+ET RRR Q+ +N++H I+PQ ++++I ++ D + ED Sbjct: 552 NVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARED 611 Query: 741 AATTNI---------------------SID-------------AQQLSLSKKKGKAHLKS 766 A T + S+D SL K ++ Sbjct: 612 ADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIEQ 671 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +QMH AA +L FE AAR+RDE+ LK Sbjct: 672 MSQQMHQAAADLQFELAARLRDEVGELK 699 >gi|67921104|ref|ZP_00514623.1| Excinuclease ABC, B subunit [Crocosphaera watsonii WH 8501] gi|67857221|gb|EAM52461.1| Excinuclease ABC, B subunit [Crocosphaera watsonii WH 8501] Length = 680 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/659 (53%), Positives = 460/659 (69%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ + P+GDQP+AI QL K I + + Q LLG TG+GKTF++A VIE + +P +V+A Sbjct: 18 FNLKAPFKPTGDQPSAIKQLTKSIEAGNRFQTLLGATGTGKTFSVAAVIENIGKPTLVLA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH Sbjct: 78 HNKTLAAQLCNEFRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V L +G V+Q++LL LV QY R Sbjct: 138 SATRSLFERKDVIVVASISCIYGLGMPSEYLKASVPLVVGKEVDQRQLLRDLVTIQYSRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG + +++ I IY Sbjct: 198 DLELQRGRFRVKGDVLEIVPAY-EDRVIRVEFFGDEIDAIRYLDPVTGDILNSLKNINIY 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A + I ELK ++ LEK G+LLE QR+ QR YDLE+L G C Sbjct: 257 PARHFVTPDEQLEFACEAIDIELKQQVQCLEKAGKLLELQRINQRTRYDLELLREVGYCN 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G PP L +Y P D LL VDESHVT+PQI GMY GD RK L ++ Sbjct: 317 GVENYSRHLAGRKAGSPPECLVDYFPRDWLLIVDESHVTVPQIRGMYNGDQARKKVLIDH 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I VSATPG+WE+EQ + ++EQIIRPTG++DP + Sbjct: 377 GFRLPSAADNRPLKSEEFWDKVNQCIFVSATPGNWEIEQSEERVIEQIIRPTGVLDPEIF 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI ++ R+L+T LTKRM+EDLTEY ER+I+VRY+HSE+K++E Sbjct: 437 VRPTEGQVDDLLGEIKQRVKRQERVLITTLTKRMSEDLTEYFQERDIKVRYLHSEIKSIE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++ LR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 497 RIEILQALRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +VN + ILY D +T S+ A++ET RRR Q+ HNK+HNI P+ + ++ I L Sbjct: 557 HVNGQAILYGDNLTDSMIKAMEETERRRNIQMAHNKRHNITPKPIIKRSSNAILSFLDIS 616 Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L + A L L K ++ L +QM AA NL FEEAA+ RD+IKRL+ Sbjct: 617 RRLNSQELEEVYTQADDLPLDKV--PELIQQLEQQMQEAAKNLEFEEAAKYRDKIKRLR 673 >gi|239636629|ref|ZP_04677631.1| excinuclease ABC subunit B [Staphylococcus warneri L37603] gi|239597984|gb|EEQ80479.1| excinuclease ABC subunit B [Staphylococcus warneri L37603] Length = 661 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 470/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +++KG+ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLNSEFDPQGDQPEAIKKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIQQVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +E+ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++++ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R+ G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRSLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTNQLVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQDRIDKNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S++ AIDET RRR+ Q+ HN+K+ I P+++ +KI +VI + D Sbjct: 546 NDRGEVIMYADKITDSMRYAIDETQRRRDIQMAHNEKYGITPKTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 N + + ++KK+ + ++++ K+M AA +L+FE A +RD + LKS Sbjct: 606 DTNENKQTEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKS 659 >gi|297208515|ref|ZP_06924944.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912607|ref|ZP_07130050.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus TCH70] gi|296886770|gb|EFH25674.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886853|gb|EFK82055.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp. aureus TCH70] Length = 661 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|282922055|ref|ZP_06329752.1| excinuclease ABC, B subunit [Staphylococcus aureus A9765] gi|282593713|gb|EFB98705.1| excinuclease ABC, B subunit [Staphylococcus aureus A9765] Length = 663 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKGLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|254302627|ref|ZP_04969985.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322819|gb|EDK88069.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 663 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/653 (52%), Positives = 476/653 (72%), Gaps = 4/653 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ ++Y P+GDQP AI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP+++ Sbjct: 4 NLFKIHSNYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ L+ +Y Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK++ N+E I Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + ++ IK++LK+ + + E + +LLEAQRL QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD RK +L Sbjct: 303 YCKGIENYSRYLSGKKPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKESL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I+P+S+ ++I E D I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIIKEIAE--DLIN 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 L+ + +++ +K + + L K++ + L+FE+A +RDE+ Sbjct: 601 LDYGIEEKKFENDKKVFRNKTDIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653 >gi|282899442|ref|ZP_06307409.1| Excinuclease ABC, B subunit [Cylindrospermopsis raciborskii CS-505] gi|281195706|gb|EFA70636.1| Excinuclease ABC, B subunit [Cylindrospermopsis raciborskii CS-505] Length = 665 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/658 (53%), Positives = 464/658 (70%), Gaps = 6/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P+GDQP AIA+++K I +++ Q LLG TG+GKTF++A VIE + +P +V+A Sbjct: 4 FTLQAPFSPTGDQPQAIAEMIKNIEGKQRYQTLLGATGTGKTFSIAAVIEKVGKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK S+IN +ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVTDTYIEKTSAINSEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + + L+IG ++ +E++ L+ QY R Sbjct: 124 SATRSLFEREDVIVVTSISCIYGLGMPAEYLKAAITLEIGMEIDPREVIRKLISVQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FRV GD IEI P++ ED RV FG+DI+ I P+ G+ + ++E I IY Sbjct: 184 DIEIGRGKFRVRGDVIEIGPAY-EDRIVRVEFFGDDIDAIRYVDPVKGEIMSSLERISIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A I +ELK ++LE+ G+L+EAQR++QR YD+E+L G C Sbjct: 243 PARHFVTPKERLEIACLEISDELKAYKLKLEELGKLVEAQRIDQRTRYDIELLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL GR GEPP L +Y P+D LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 303 GVENYSRYLAGRQAGEPPECLIDYFPQDWLLVIDESHVTVPQIRGMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I VSATPG WE+E IVEQIIRPTG++DP + Sbjct: 363 GFRLPSAGDNRPLKAEEFWQKVSQCIFVSATPGDWEIEVSGKNIVEQIIRPTGVLDPQIY 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+++ EI+ R+L+T LTKRMAEDLTEYL R++RVRY+HSE+ +++ Sbjct: 423 VRPTAGQVDNLLGEIHERVDNNERVLITTLTKRMAEDLTEYLENRSVRVRYLHSEINSIQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++DLR G FDVLVG+NLLREGLD+PE LV I+DADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEILQDLRNGSFDVLVGVNLLREGLDLPEVSLVVIMDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVIDPI 736 +++ KVI+YAD +T S+ AI+ET RRR Q+ +NK HNI PQ V +K I+ +D Sbjct: 543 HLHGKVIMYADNLTGSMIKAIEETDRRRGIQMAYNKIHNITPQPVFKKSGNSILSFLDVS 602 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +A + +D Q L+ ++ + +L KQMH AA + FE AA++RD IK L+ Sbjct: 603 RRLNANDLKL-VDEQWHDLNLEEIPQLITTLEKQMHDAAKKMEFEHAAKLRDRIKSLR 659 >gi|295425570|ref|ZP_06818259.1| excision endonuclease subunit UvrB [Lactobacillus amylolyticus DSM 11664] gi|295064746|gb|EFG55665.1| excision endonuclease subunit UvrB [Lactobacillus amylolyticus DSM 11664] Length = 681 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/658 (51%), Positives = 468/658 (71%), Gaps = 3/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKYSPAGDQQQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ERND IVV+SVSCIYG+G Y++ ++ L GD +E+ LL LV QY R Sbjct: 130 AATSALMERNDVIVVASVSCIYGLGDPREYARSVLTLHEGDEIERNVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ A+R+ FG++I+ I E LTG+ E+I ++ Sbjct: 190 DIDFGRGRFRVRGDVVEVFPAGNSKHAYRIEFFGDEIDRIVEIDSLTGEIFGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A++ I +E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQMRRALQAISQEMNVQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P++ MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPELRAMYNGDRNRKKTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 N + +VI+YAD+IT S++ AID T RRR+ Q+E NK+H I P+++ + I + I ++ Sbjct: 549 NAHGEVIMYADSITDSMREAIDATNRRRKIQMEFNKEHGITPKTIIKPIRQAISATKQVD 608 Query: 740 DAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D + S D L+KK+ + + SL+ QM AA L+FEEAA +RD + L+ S Sbjct: 609 DKYKKSDSFADLNFDELTKKQKEKMIDSLKAQMQEAAKKLDFEEAANLRDAMMELQKS 666 >gi|253315807|ref|ZP_04839020.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 661 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +I EQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMI-EQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|72383085|ref|YP_292440.1| excinuclease ABC subunit B [Prochlorococcus marinus str. NATL2A] gi|90111044|sp|Q46IE1|UVRB_PROMT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|72002935|gb|AAZ58737.1| Excinuclease ABC subunit B [Prochlorococcus marinus str. NATL2A] Length = 678 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/671 (53%), Positives = 465/671 (69%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P GDQPAAI L+ G++ EK Q LLG TG+GKTFT+A +I RPA+V+A Sbjct: 4 YKLQAPYTPKGDQPAAIKGLVGGVNDGEKFQTLLGATGTGKTFTIANLIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPDNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER+D IVV+S+SCIYG+G Y + V+ ++G S++ + L SLV QY R Sbjct: 124 SATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFQVGQSIDLRSCLRSLVSNQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FRV GD +EI P++ +D R+ +FG+++E IS P TG+ + +++I IY Sbjct: 184 DIEISRGRFRVRGDVLEIGPAY-DDRLVRLELFGDEVESISYVDPTTGEILNKLDSINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L++A+K IK+ELK RL L +EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQEGKLLEAQRLEQRTIYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR PG P L +Y P+D LL +DESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLR-FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ E WN + T+ +SATPG WEL Q IVEQ+IRPTG++DP V Sbjct: 363 GFRLPSAADNRPLKDIEFWNKAK-QTVFISATPGDWELSQSTKNIVEQVIRPTGVLDPLV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI A + RIL+T LTKRMAEDLT+YL E IRVRY+HSE+ ++ Sbjct: 422 EVRPTHGQVDDLLFEIRKRASKNQRILVTTLTKRMAEDLTDYLSENKIRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LV ILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAQRSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738 R+V +LYAD +T S+ AI ET RRRE Q +N +H I P+ +K I L Sbjct: 542 RHVEGLALLYADKMTDSMAKAISETERRREIQNIYNIEHGITPKPAGKKASNSILSFLEI 601 Query: 739 -----EDAATTNISIDAQQL---SLSKKKGKAHLKS-------LRKQMHLAADNLNFEEA 783 +D +T + A +L S L+S L +M + A +L+FE A Sbjct: 602 SRRLNQDGSTDDFVDIADKLIEHSAKDSDSGVSLESLPELIEKLESKMKIKAKDLDFETA 661 Query: 784 ARIRDEIKRLK 794 A +RD IK+L+ Sbjct: 662 AILRDRIKKLR 672 >gi|82750463|ref|YP_416204.1| excinuclease ABC subunit B [Staphylococcus aureus RF122] gi|82655994|emb|CAI80399.1| exinuclease ABC subunit B [Staphylococcus aureus RF122] Length = 663 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISANVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|68535902|ref|YP_250607.1| excinuclease ABC subunit B [Corynebacterium jeikeium K411] gi|68263501|emb|CAI36989.1| excinuclease ABC, subunit B [Corynebacterium jeikeium K411] Length = 715 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/678 (51%), Positives = 475/678 (70%), Gaps = 25/678 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISDYKPAGDQPKAIEELHQRLDRGERDVVLMGATGTGKSATAAWLIEKEQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V LK+ + VE+ L LV QY R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVDEEVERDRFLRLLVDIQYSRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+++I P++ E++A RV FG+DI+ + +PLTG IR V+ ++I+ Sbjct: 208 DVAFTRGTFRVKGDTVDIIPAY-EELAVRVEFFGDDIDALYYIHPLTGDVIRQVDELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + AM+ IKEEL RL ELE G+LLEAQRL R YDLEM++ G Sbjct: 267 PATHYVAGPERMEKAMQAIKEELAQRLEELENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRAAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ + + +SATPG +E+ QG VEQ+IRPTGLVDP VE Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEYVEQVIRPTGLVDPKVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ ++I ++ R+L+T LTKRMAEDLT+YL E ++VRYMHS++ TL+ Sbjct: 447 VRPTEGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +VI+YAD +T S+Q AIDET RRR KQ+ +N++H I+PQ +++KI +++D + + Sbjct: 567 NVSGEVIMYADQVTDSMQYAIDETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVAELE 626 Query: 741 A------------------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 A A + + + +++ + + ++ + +QM AA Sbjct: 627 AESGADAAGGAGADSSAGGRGESPEADWALVRGSSEEPMARPQLEKLIQEMTEQMKSAAK 686 Query: 777 NLNFEEAARIRDEIKRLK 794 L FE A R+RDEI LK Sbjct: 687 ELKFELAGRLRDEIADLK 704 >gi|187776676|ref|ZP_02993149.1| hypothetical protein CLOSPO_00191 [Clostridium sporogenes ATCC 15579] gi|187775335|gb|EDU39137.1| hypothetical protein CLOSPO_00191 [Clostridium sporogenes ATCC 15579] Length = 665 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/656 (52%), Positives = 466/656 (71%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++P+GDQP AI + KGI + EK Q L+GVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 7 FKVISKFNPTGDQPKAIKAIAKGIENGEKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF++FFP+++VEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 67 HNKTLAAQLCSEFRDFFPNSSVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ LV+ QY+R Sbjct: 127 SATAALFERRDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++IFP+ + A RV FG++I+ I EF LTG+ I ++ + I+ Sbjct: 187 DIDFSRGTFRVKGDVLDIFPAASSNKAIRVEFFGDEIDRIKEFDSLTGETITKLKHVSIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + ++LEAQRL+QR +D+EM+ G C Sbjct: 247 PASHFATSKDRLEIAIKSIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G P TL +Y P+D LLF+DESHVT+PQ+ M GD RK +L EY Sbjct: 307 GIENYSRVLDGRAKGTSPQTLLDYFPDDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL F E+ + VSATP +ELE I EQ+IRPTGL+DP + Sbjct: 367 GFRLPCAYDNRPLTFNEFENKLNQVVFVSATPAKYELEHSTN-IAEQVIRPTGLLDPEII 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDLT+YL E I+ RY+HS++ T+E Sbjct: 426 VKPVKGQIDDLYANIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGIKTRYLHSDIDTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 486 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+Y D ITKS++ I+ET RRR+ Q+E+N+KH I P+++ + I EVI + D Sbjct: 546 NSESKVIMYGDVITKSMEKTIEETNRRRKIQMEYNEKHGIVPKTIIKDIREVIQ---ISD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A D +L ++ K+M AA NL FE+AA +RD I +LK Sbjct: 603 IAEEREEYDNLNEALKSYNNDIDKLIEQYEKEMREAAQNLQFEKAAHLRDVIYKLK 658 >gi|225022614|ref|ZP_03711806.1| hypothetical protein CORMATOL_02656 [Corynebacterium matruchotii ATCC 33806] gi|305682155|ref|ZP_07404959.1| excinuclease ABC, B subunit [Corynebacterium matruchotii ATCC 14266] gi|224944522|gb|EEG25731.1| hypothetical protein CORMATOL_02656 [Corynebacterium matruchotii ATCC 33806] gi|305658628|gb|EFM48131.1| excinuclease ABC, B subunit [Corynebacterium matruchotii ATCC 14266] Length = 684 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/685 (52%), Positives = 481/685 (70%), Gaps = 14/685 (2%) Query: 130 SINNHSK--DITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 S+N+H + DI F++ +DY P+GDQPAAIA+L + I+ E+ +LLG TG+GK+ Sbjct: 3 SVNSHHQPDDIARTPGRFEVISDYQPAGDQPAAIAELTQRINRGERDIILLGATGTGKSA 62 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 T A +IE +QRP ++MAPNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDT Sbjct: 63 TAAWLIEQVQRPTLIMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDT 122 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 YIEK+S+IN+ ++R+RH AT SLL R D +VVSSVSCIYG+G+ ++Y V L GD + Sbjct: 123 YIEKDSAINDDVERLRHRATSSLLSRRDVVVVSSVSCIYGLGNPQTYLDRSVLLNTGDEI 182 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++ L LV QY+R DIG RG FRV GD+I+I P++ E+ A RV FG++I+ + Sbjct: 183 DRDHFLRLLVDIQYERNDIGFTRGAFRVKGDTIDIIPAY-EETAVRVEFFGDEIDALYHI 241 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PLTG I +TI+I+ +HYV ++ A IK EL RL +LE G+LLEAQRL Sbjct: 242 NPLTGDIISQADTIRIFPATHYVATPERMHRATCDIKAELADRLKDLENRGKLLEAQRLR 301 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 R YDLEM+E G C IENYSR+L GR+ G P TL +Y P+D L +DESHVT+PQI Sbjct: 302 MRTEYDLEMIEQVGFCSGIENYSRHLDGRSAGSAPATLLDYFPDDFLTIIDESHVTVPQI 361 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 M+ GD RK L E+GFRLPS +DNRPL +EE+ T+ +SATPG +EL G Sbjct: 362 GAMFEGDMSRKRNLVEFGFRLPSALDNRPLTWEEFEERVGQTVYMSATPGRYELTAAGGE 421 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 VEQ+IRPTGLVDP + ++ Q++D+ EI + R+L+T LTK+MAEDLT+YL Sbjct: 422 YVEQVIRPTGLVDPKITVKPTTGQIDDLIGEIRTRTAKNERVLVTTLTKKMAEDLTDYLL 481 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 + I+VRY+HS+V TL+R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEG Sbjct: 482 DTGIKVRYLHSDVDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEG 541 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AIDET RRR+KQ+ +N +H I+PQ Sbjct: 542 FLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIDETERRRKKQIAYNTEHGIDPQ 601 Query: 724 SVKEKIMEVIDPIL---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 +++KI +++D + ED ++I Q S ++ + + +L M AA +LNF Sbjct: 602 PLRKKIADILDQLTDTPHEDTPDDLVAITHQPNSTTEI--QQLITTLTTHMGDAARDLNF 659 Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805 E AAR+RDEI LK +G+ D+ Sbjct: 660 ELAARLRDEIADLKKQ--LRGMKDA 682 >gi|148267218|ref|YP_001246161.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus JH9] gi|150393267|ref|YP_001315942.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus JH1] gi|255005549|ref|ZP_05144150.2| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269202379|ref|YP_003281648.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus ED98] gi|296275167|ref|ZP_06857674.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MR1] gi|147740287|gb|ABQ48585.1| Excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus JH9] gi|149945719|gb|ABR51655.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus JH1] gi|262074669|gb|ACY10642.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus ED98] gi|315129444|gb|EFT85437.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus CGS03] gi|329724619|gb|EGG61126.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus 21172] Length = 661 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|15923748|ref|NP_371282.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|15926435|ref|NP_373968.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus N315] gi|156979086|ref|YP_001441345.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|257794921|ref|ZP_05643900.1| excinuclease ABC, B subunit [Staphylococcus aureus A9781] gi|258418237|ref|ZP_05682502.1| excinuclease ABC subunit B [Staphylococcus aureus A9763] gi|258421534|ref|ZP_05684459.1| excinuclease ABC, B subunit [Staphylococcus aureus A9719] gi|258430729|ref|ZP_05688441.1| exinuclease ABC subunit B [Staphylococcus aureus A9299] gi|258440950|ref|ZP_05690785.1| exinuclease ABC subunit B [Staphylococcus aureus A8115] gi|258445780|ref|ZP_05693957.1| exinuclease ABC subunit B [Staphylococcus aureus A6300] gi|258449591|ref|ZP_05697693.1| exinuclease ABC subunit B [Staphylococcus aureus A6224] gi|258453991|ref|ZP_05701963.1| exinuclease ABC subunit B [Staphylococcus aureus A5937] gi|282895054|ref|ZP_06303275.1| excinuclease ABC, B subunit [Staphylococcus aureus A8117] gi|282926624|ref|ZP_06334254.1| excinuclease ABC, B subunit [Staphylococcus aureus A10102] gi|295406480|ref|ZP_06816286.1| excinuclease ABC [Staphylococcus aureus A8819] gi|297245206|ref|ZP_06929080.1| excinuclease ABC [Staphylococcus aureus A8796] gi|54039843|sp|P67425|UVRB_STAAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|54042751|sp|P67424|UVRB_STAAM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|13700649|dbj|BAB41946.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus N315] gi|14246527|dbj|BAB56920.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|156721221|dbj|BAF77638.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|257788893|gb|EEV27233.1| excinuclease ABC, B subunit [Staphylococcus aureus A9781] gi|257839030|gb|EEV63509.1| excinuclease ABC subunit B [Staphylococcus aureus A9763] gi|257842460|gb|EEV66884.1| excinuclease ABC, B subunit [Staphylococcus aureus A9719] gi|257849401|gb|EEV73371.1| exinuclease ABC subunit B [Staphylococcus aureus A9299] gi|257852464|gb|EEV76385.1| exinuclease ABC subunit B [Staphylococcus aureus A8115] gi|257855356|gb|EEV78294.1| exinuclease ABC subunit B [Staphylococcus aureus A6300] gi|257857099|gb|EEV79998.1| exinuclease ABC subunit B [Staphylococcus aureus A6224] gi|257863856|gb|EEV86612.1| exinuclease ABC subunit B [Staphylococcus aureus A5937] gi|282591517|gb|EFB96589.1| excinuclease ABC, B subunit [Staphylococcus aureus A10102] gi|282762550|gb|EFC02689.1| excinuclease ABC, B subunit [Staphylococcus aureus A8117] gi|285816460|gb|ADC36947.1| Excinuclease ABC subunit B [Staphylococcus aureus 04-02981] gi|294968625|gb|EFG44648.1| excinuclease ABC [Staphylococcus aureus A8819] gi|297177877|gb|EFH37126.1| excinuclease ABC [Staphylococcus aureus A8796] Length = 663 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|312829250|emb|CBX34092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 661 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPKGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|295094304|emb|CBK83395.1| excinuclease ABC, B subunit [Coprococcus sp. ART55/1] Length = 662 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/656 (52%), Positives = 477/656 (72%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+KG + + LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FELVSEYKPTGDQPEAIEKLVKGFQEGNQFETLLGVTGSGKTFTMANVIQQLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV TDTYI K+SSIN+ IDRMRH Sbjct: 64 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVASTDTYIAKDSSINDDIDRMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L++R D IVV+SVSCIYGIG + Y ++ ++G ++ +++ L QY R Sbjct: 124 SATAALIDRKDVIVVASVSCIYGIGDPDEYRNQMLSFRVGMIKDRDQVIDELTDIQYDRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RGTFRV GD +EI P D R+ FG++I+ I+EF PLTG+ R++ ++ Sbjct: 184 DMDLQRGTFRVRGDVLEIIPVSTFDDGIRIEFFGDEIDRITEFDPLTGEGKRDLTYTCLF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + + A+K I+ ELK R+ + + +L+EAQR+E+R +D+EM+ TG C Sbjct: 244 PASHYVVGQEKMEKALKRIEAELKDRVAYFKSKDKLIEAQRIEERTNFDMEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L GR+ GE P TL ++ +D LL +DESH+T+PQ+ MY GD RK L +Y Sbjct: 304 GIENYSGPLAGRSAGETPSTLLDFFDDDFLLIIDESHMTVPQVGAMYSGDRSRKMNLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATPG +E E+ Q ++ EQIIRPTGL+DPPVE Sbjct: 364 GFRLPSALDNRPLNFSEFEQKLDQVMFVSATPGKYE-EEHQMLMAEQIIRPTGLLDPPVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+ +QG ++L+T LTKRMAEDLT Y+ + +I+V+Y+HS++ T+E Sbjct: 423 VRPVEGQIDDLLKEVRKETEQGHKVLVTTLTKRMAEDLTSYMRDNDIKVKYLHSDIDTME 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIVRDLRLGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YADTIT S++ A+DET+RRRE Q ++N++H I P+++++ I ++I I ++ Sbjct: 543 NVDGHVIMYADTITGSMKYALDETSRRREIQQKYNEEHGITPKTIEKSIRDLI-TIEVKK 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + DA+ S++KK+ + + L K+M++AA +LNFE AA IRD++K K++ Sbjct: 602 EELPDEDKDAE--SMTKKELQKVIAKLTKKMNMAAADLNFEVAAEIRDQLKVYKAA 655 >gi|168181962|ref|ZP_02616626.1| excinuclease ABC, B subunit [Clostridium botulinum Bf] gi|237796846|ref|YP_002864398.1| excinuclease ABC subunit B [Clostridium botulinum Ba4 str. 657] gi|259710323|sp|C3KV20|UVRB_CLOB6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|182674913|gb|EDT86874.1| excinuclease ABC, B subunit [Clostridium botulinum Bf] gi|229261871|gb|ACQ52904.1| excinuclease ABC, B subunit [Clostridium botulinum Ba4 str. 657] Length = 662 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 462/656 (70%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++P+GDQP AI + KGI EK Q L+GVTGSGKTFTMA +IE Q+P +V+A Sbjct: 4 FKVISKFNPTGDQPKAIKSIAKGIEKGEKFQTLIGVTGSGKTFTMANIIEKAQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ LV+ QY+R Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++IFP+ A RV FG++I+ I EF LTG+ I ++ I I+ Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAIRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + ++LEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSKDRLEIAIKNIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y P+D LLF+DESHVT+PQ+ M GD RK +L EY Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL F+E+ + VSATP +ELE EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQIVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDLT+YL E ++ RY+HS++ T+E Sbjct: 423 VKPVKGQIDDLYTSIQETIKKGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+Y D ITKS++ I ET RRR+ Q+E+N+KH I P+++ + I EVI + D Sbjct: 543 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEKHGIVPKTIIKDIREVIQ---ISD 599 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A D +L ++ ++M AA NL FE+AA +RD I +LK Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMREAAQNLQFEKAAHLRDVIYKLK 655 >gi|33862205|ref|NP_893766.1| excinuclease ABC subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81835535|sp|Q7UZL3|UVRB_PROMP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33634423|emb|CAE20108.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 679 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/670 (51%), Positives = 469/670 (70%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI +L++G++S E+ Q LLG TG+GKTFT+A VI+ RPA+++A Sbjct: 4 YKLQAPYQPNGDQPKAIKKLVQGVNSGEEFQTLLGATGTGKTFTIANVIQQTGRPALILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELRQFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ +G+S++ + L +LV QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFAVGESIDLRSSLRALVDNQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ ED R+ +FG++IE I PLTG+ + +++ + +Y Sbjct: 184 DTEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEIEAIRFVDPLTGEILESLDQVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L++A+ I+ ELK +L + EG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKERLDSAISAIRNELKEQLDKFAYEGKLLEAQRLEQRTKYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC+G +EQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSRQTLFISATPGQWELDQCEGKFIEQVIRPTGVLDPIID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + A++ R+L+T LTKRMAEDLT++L + +RVRY+HSE+ ++E Sbjct: 423 VRPSDGQIDDLLSEIRVRAKKNQRVLVTTLTKRMAEDLTDFLSDNKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V +LYAD T+S++ AI ET RRR Q ++N+ + I P+ +KI I L Sbjct: 543 HVEGVALLYADNFTESMKRAISETDRRRTIQKKYNQINGITPKPAGKKIENSILSFLELS 602 Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKAHL-------KSLRKQMHLAADNLNFEEAA 784 L+ + NI + L+ K + L L +M AA LNFEEAA Sbjct: 603 RKLDTGGLSKDLINIVSNKTDDILNAKDNQCLLDEMPSLIDKLENKMKDAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKKLR 672 >gi|251799690|ref|YP_003014421.1| excinuclease ABC subunit B [Paenibacillus sp. JDR-2] gi|247547316|gb|ACT04335.1| excinuclease ABC, B subunit [Paenibacillus sp. JDR-2] Length = 667 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/656 (54%), Positives = 466/656 (71%), Gaps = 2/656 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+++DY P GDQP AI +L++G+++ E Q LLG TG+GKT+T+A I + RP +V+ Sbjct: 11 LFQLKSDYTPQGDQPGAIRKLVEGVNNGEAKQTLLGATGTGKTYTIANTIAELNRPTLVI 70 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL SEFK FFP NAV YFVSYYDY+QPEAY+P TDTYIEK+SSIN++ID++R Sbjct: 71 AHNKTLAAQLCSEFKEFFPDNAVSYFVSYYDYFQPEAYIPSTDTYIEKDSSINDEIDKLR 130 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSAT SL ER D I+V+SVSCIYG+GS Y +++ L++G + +L LV QY+R Sbjct: 131 HSATSSLFERRDVIIVASVSCIYGLGSPSEYGSLVLSLRVGMEKSRDTILHKLVDIQYQR 190 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI IRGTFRV GD +EIFP + A RV +FG++IE I+E LTG+ + + + I Sbjct: 191 NDINFIRGTFRVRGDIVEIFPVANNERAIRVELFGDEIERITEIDVLTGEIVSERDHVAI 250 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SH+VT T+ A+ I+ EL+ RL EL +EG+LLEAQRLEQR YDLEM+ G C Sbjct: 251 FPASHFVTHEETMKVALGNIERELEERLAELREEGKLLEAQRLEQRTRYDLEMMAEMGFC 310 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L Sbjct: 311 SGIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKEMLVN 370 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ I VSATPG +ELE C +VEQIIRPTGL+DP + Sbjct: 371 HGFRLPSALDNRPLRFEEFEGKSKQQIYVSATPGPYELEHCP-TMVEQIIRPTGLLDPII 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ EI + R+L+T LTK+MAEDLT+Y E I+VRY+HS++KTL Sbjct: 430 EVRPTKGQIDDLLVEIRDRIAKDERVLVTTLTKKMAEDLTDYFKEIGIKVRYLHSDIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI I+RDLRLG F VLVGINLLREGLD+PE LV+ILDADKEGFLRS+ SLIQTIGRAA Sbjct: 490 ERIAILRDLRLGTFHVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + +VI+Y D IT S+ A+ ET RRR Q+ +N++H I PQ++++K+ + I + Sbjct: 550 RNSDGRVIMYGDKITDSMDKALKETERRRAIQIAYNEEHGITPQTIRKKVHDDIKATKVA 609 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++ + +SKK+ +A L+ L +M AA NL FE AA +RD + LK+ Sbjct: 610 EEKSEYLTGVGSE-KMSKKERQALLQRLEAEMKDAAKNLQFERAAELRDALLELKA 664 >gi|319949850|ref|ZP_08023863.1| excinuclease ABC subunit B [Dietzia cinnamea P4] gi|319436489|gb|EFV91596.1| excinuclease ABC subunit B [Dietzia cinnamea P4] Length = 709 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/673 (51%), Positives = 486/673 (72%), Gaps = 11/673 (1%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 I + + F++ +++ PSGDQP AIA+L + + E+ +LLG TG+GK+ T A +IE Sbjct: 27 IGDVERSTNRFEVVSEFTPSGDQPTAIAELSERLARGERDVVLLGATGTGKSATTAWLIE 86 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDT+IEK+SS Sbjct: 87 KVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTFIEKDSS 146 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN+ ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY V L +G V++ +LL Sbjct: 147 INDDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVSLAVGQEVDRDQLLR 206 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY+R D+ + RGTFR GD+++I P++ E++A R+ FG++++ + +PLTG Sbjct: 207 LLVDVQYERNDVSMTRGTFRAKGDTVDIIPTY-EELAVRIEFFGDEVDALYYIHPLTGDV 265 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +R V+ ++I+ +HYV + A+ I+EEL++RL ELE +G+LLEAQRL R +YD+ Sbjct: 266 VRRVDEVRIFPATHYVAGPERMAKAIASIEEELEVRLAELENQGKLLEAQRLRMRTSYDI 325 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM++ G C IENYSR++ GR G P TL +Y PED L +DESHVT+PQI MY GD Sbjct: 326 EMMQQVGFCSGIENYSRHIDGRPAGSAPATLIDYFPEDFLTVIDESHVTVPQIGAMYEGD 385 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L ++GFRLPS +DNRPL +EE++ T+ +SATPG +E+ + G VEQ+IR Sbjct: 386 ASRKRNLVDFGFRLPSALDNRPLTWEEFSDRVGQTVYLSATPGPYEMGRTGGEFVEQVIR 445 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP + ++ + Q++D+ EI A++ R+L+T LTK+M+EDLT+YL E +RVR Sbjct: 446 PTGLVDPKIVVKPTKGQIDDLIGEIRARAERDERVLVTTLTKKMSEDLTDYLLELGVRVR 505 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE+ TL+R+E++RDLR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 506 YLHSEIDTLQRVELLRDLRRGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTS 565 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YADTIT S++ A++ET RRREKQ+ +N +H I+PQ +++KI Sbjct: 566 LIQTIGRAARNVSGEVHMYADTITDSMRYAMEETERRREKQIAYNTEHGIDPQPLRKKIA 625 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFE 781 +++D + E + +T+ D +L ++ G A ++ + +QM AA +L FE Sbjct: 626 DILDRVGEERSDSTD-GADRPELLGARAVGDAARPRKELEKLIEEMTEQMMSAATDLRFE 684 Query: 782 EAARIRDEIKRLK 794 A R+RDEI L+ Sbjct: 685 LAGRLRDEIAELR 697 >gi|257068672|ref|YP_003154927.1| excinuclease ABC subunit B [Brachybacterium faecium DSM 4810] gi|256559490|gb|ACU85337.1| Excinuclease ABC subunit B [Brachybacterium faecium DSM 4810] Length = 700 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/680 (53%), Positives = 481/680 (70%), Gaps = 28/680 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AIA L K I+ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 14 FEVVSEYRPSGDQPTAIADLTKRINDGEQDVVLLGATGTGKSATTAWLIEQVQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN +++R+RH Sbjct: 74 HNKTLAAQLASEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINAEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ + Y +VQL++GD +++ ELL+ V QY R Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMVQLEVGDELDRDELLTRFVDMQYDRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++I+ + +P+TG+ IR + I I+ Sbjct: 194 DVAFERGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIDALYTLHPMTGEVIRQEDHIHIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV L A+ I+EEL RL ELE + +LLEAQRL R T+DLEML GS Sbjct: 253 PASHYVAGPERLARAIGTIEEELAERLEELETQNKLLEAQRLRMRTTHDLEMLRQMGSTN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR PG P TL +Y PED LL +DESHVT+PQI MY GD RK TL ++ Sbjct: 313 GVENYSRHLDGRAPGTAPNTLMDYFPEDFLLVIDESHVTVPQIGAMYEGDRSRKRTLVDF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ T+ +SATP +EL + G+ VEQIIRPTGLVDP V Sbjct: 373 GFRLPSALDNRPLTFSEFTERTGQTVYLSATPAEYELNRAHGV-VEQIIRPTGLVDPEVI 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +EI Q+ R+L+T LTKRMAEDLT++L E +RV+Y+HS+V TL Sbjct: 432 VKPVKGQIDDLREEIEKRVQRDERVLVTTLTKRMAEDLTDFLLENGVRVQYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R LR G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 492 RIELLRSLRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T S+Q AIDET RRREKQ+ +N +H I+P ++++I +V D + ED Sbjct: 552 NVSGQVHMYADRVTDSMQDAIDETNRRREKQIAYNTEHGIDPTPLRKRIADVTDMLARED 611 Query: 741 AATTNI--------------------SIDAQQ---LSLSKKKGKA---HLKSLRKQMHLA 774 T + S+D+ Q + L + A + + QMH A Sbjct: 612 IDTDTLMATDYRSGKDRVAADRARANSVDSMQGRKVDLGEDPVGALTGMIDEMTAQMHQA 671 Query: 775 ADNLNFEEAARIRDEIKRLK 794 A++LNFE AAR+RDE++ LK Sbjct: 672 AESLNFEVAARLRDEVQELK 691 >gi|312870319|ref|ZP_07730447.1| excinuclease ABC, B subunit [Lactobacillus oris PB013-T2-3] gi|311094203|gb|EFQ52519.1| excinuclease ABC, B subunit [Lactobacillus oris PB013-T2-3] Length = 681 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/661 (50%), Positives = 465/661 (70%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P+GDQP AI QL KGI + +K Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 10 FDLVSDYQPTGDQPEAIDQLTKGIENGDKAQILLGATGTGKTFTISNVIANVNKPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+ Sbjct: 70 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LLERND IVV+SVS I+G+G+ Y ++ L +G +++ LL LV QY R Sbjct: 130 AATTALLERNDVIVVASVSSIFGLGNPNEYQNSVISLHVGQEIDRDFLLRQLVTIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A R+ FG++I+ I E LTG+ + E + I+ Sbjct: 190 DIDFQRGRFRVHGDVVEIFPASHSETALRIEFFGDEIDRIREVDALTGEVKGDREEVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I++++K ++ + EG LLEA+RL+QR TYD+EM+ G Sbjct: 250 PATHFMTNEDIMDVALPEIEQDMKKQVKKFTDEGNLLEAERLQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDRRKPGEPPYTLLDFFPKDYLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E EQ + +QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLNEFEQHVNQVVYMSATPGPYEQEQTDH-VAQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ EIN ++ R+ +T LTK+M+EDLT+YL + ++V+Y+HS++KTLE Sbjct: 429 VRPVMGQIDNLVGEINKRIERHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T+S+Q AIDET RRR Q+++N+ H+I P ++ + I E I ++ Sbjct: 549 NEHGAVIMYADEVTESMQKAIDETKRRRSIQMKYNEDHHITPHTIVKPIQEAISAT--KE 606 Query: 741 AATTNISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T D+ + + LSK + L +QM AA L+FE+AA +RD + LK Sbjct: 607 TADTGEQADSTEFTTKDFAKLSKDAQANMVDELTEQMRAAAKRLDFEQAATLRDTVMELK 666 Query: 795 S 795 + Sbjct: 667 A 667 >gi|258423407|ref|ZP_05686298.1| excinuclease ABC, B subunit [Staphylococcus aureus A9635] gi|257846468|gb|EEV70491.1| excinuclease ABC, B subunit [Staphylococcus aureus A9635] Length = 663 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDRGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|325956386|ref|YP_004291798.1| excinuclease ABC subunit B [Lactobacillus acidophilus 30SC] gi|325332951|gb|ADZ06859.1| excinuclease ABC subunit B [Lactobacillus acidophilus 30SC] gi|327183205|gb|AEA31652.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1118] Length = 682 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/659 (51%), Positives = 464/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQKQAIDELTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKGFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND IVV+SVSCIYG+G + Y++ ++ + G E+ LL LV QY R Sbjct: 130 ATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSEHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPNDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI T RRR+ Q E NK+H I P+++ + I +VI P Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQEEFNKEHGITPKTIIKPIQDVISVTKPAG 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ D L+ K+ K +K+L++QM AA L+FEEAA +RD I L+SS Sbjct: 609 DAKEEKSDSFADLNFDELTAKQKKNMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667 >gi|315037913|ref|YP_004031481.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1112] gi|312276046|gb|ADQ58686.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1112] Length = 682 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/659 (51%), Positives = 464/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDELTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKGFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND IVV+SVSCIYG+G + Y++ ++ + G E+ LL LV QY R Sbjct: 130 ATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSEHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPNDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI T RRR+ Q E NK+H I P+++ + I +VI P Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQEEFNKEHGITPKTIIKPIQDVISVTKPAG 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ D L+ K+ K +K+L++QM AA L+FEEAA +RD I L+SS Sbjct: 609 DAKEEKSDSFADLNFDELTAKQKKNMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667 >gi|54023870|ref|YP_118112.1| excinuclease ABC subunit B [Nocardia farcinica IFM 10152] gi|54015378|dbj|BAD56748.1| putative excision nuclease ABC subunit B [Nocardia farcinica IFM 10152] Length = 721 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/688 (52%), Positives = 482/688 (70%), Gaps = 29/688 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P+GDQPAAI +L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 33 FQVVSEHQPAGDQPAAIDELERRIKAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 92 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 93 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 152 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ +SY VQL++G V++ LL LV QY R Sbjct: 153 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGTEVDRDALLRLLVDVQYTRN 212 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R V+T++I+ Sbjct: 213 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRKVDTLRIF 271 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I++EL+ RL ELE++G+LLEAQRL R YDLEM+ G C Sbjct: 272 PATHYVAGPDRMERAVRDIEQELEERLAELERQGKLLEAQRLRMRTQYDLEMIRQVGFCS 331 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 332 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 391 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ + +SATPG +EL + G +VEQ+IRPTGLVDP V Sbjct: 392 GFRLPSAVDNRPLTWEEFADRIGQVVYLSATPGPYELGRTGGEVVEQVIRPTGLVDPKVV 451 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI L ++ R+L+T LTK+MAEDLT+YL +RVRY+HSE+ TL Sbjct: 452 VKPTKGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLGLGVRVRYLHSEIDTLR 511 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 512 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 571 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+Q AI+ET RRR KQ+ +N+K I+P+ +++KI +++D + E Sbjct: 572 NVSGEVHMYADKITDSMQFAIEETERRRAKQIAYNEKMGIDPKPLRKKIADILDQVYRE- 630 Query: 741 AATTNISIDAQQLSLSKKK----GKA---------HLKS------------LRKQMHLAA 775 A + + S ++ G+A +KS L QM AA Sbjct: 631 ADEVEVGGSGRNASRGRRAQGEPGRAVSAGVIEGRDVKSMPRAELADLVTELTAQMMNAA 690 Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803 L FE A R+RDEI LK +G+D Sbjct: 691 RELQFELAGRLRDEIADLKKE--LRGMD 716 >gi|218134926|ref|ZP_03463730.1| hypothetical protein BACPEC_02831 [Bacteroides pectinophilus ATCC 43243] gi|217990311|gb|EEC56322.1| hypothetical protein BACPEC_02831 [Bacteroides pectinophilus ATCC 43243] Length = 665 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/651 (52%), Positives = 464/651 (71%), Gaps = 4/651 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+ G + Q L+GVTGSGKTFTMA +I+ +Q+P ++++ Sbjct: 7 FRLHSEYQPTGDQPQAIDRLVAGFMEGNQFQTLVGVTGSGKTFTMANIIQKLQKPTLIIS 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH Sbjct: 67 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+VSSVSCIYG+G+ Y M+V L+ ++ +++ LV QY R Sbjct: 127 SATAALSERKDVIIVSSVSCIYGLGAPIDYRNMVVSLRPRMEADRDDVIRKLVDMQYVRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI+PS A RV FG++++ I+E LTG+ +E + I+ Sbjct: 187 EMDFKRGTFRVHGDVVEIYPSASSGDAVRVEFFGDEVDRITEVDTLTGEIKSVLEHVAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHY+ + + A+ IK EL+ R+ + E +L+EAQR+E+R +D+EML+ TG C Sbjct: 247 PNSHYIVEKEKMEAAIAGIKAELEERIKYFKSEDKLIEAQRIEERTNFDIEMLQETGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG PP TL +Y P+D L+ +DESH+T+PQI GMY GD RK TL +Y Sbjct: 307 GIENYSRHLTGLAPGMPPYTLIDYFPKDFLIIIDESHITVPQIRGMYAGDQSRKTTLVDY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATP +E + + + EQIIRPTGL+DP + Sbjct: 367 GFRLPSAKDNRPLNFQEFESKIDQMLFVSATPAQYEADH-ELLRAEQIIRPTGLLDPEIS 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + ++L+T LTK MAEDLT+YL E IRVRY+HS++ LE Sbjct: 426 VRPVEGQIDDLITEINKETKNKHKVLVTTLTKNMAEDLTKYLKEVGIRVRYLHSDIDALE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLR++TSLIQTIGRAAR Sbjct: 486 RTKIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRTETSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739 N VI+YADTIT S++ AIDET RRR Q ++N++HNI P+++++ + ++I E Sbjct: 546 NSEGHVIMYADTITDSMRQAIDETERRRAIQQKYNEEHNITPKTIQKAVRDLISISRAAE 605 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 T N+ D + S+S+++ + + + K MH AA LNFEEAA++RD++ Sbjct: 606 PKDTMNLEKDYE--SMSRRELEKVARQIEKNMHRAAAELNFEEAAQLRDQM 654 >gi|315194377|gb|EFU24769.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus CGS00] Length = 661 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQFRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|253732793|ref|ZP_04866958.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|253729158|gb|EES97887.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus TCH130] Length = 661 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E TG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYRTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|225163534|ref|ZP_03725846.1| excinuclease ABC, B subunit [Opitutaceae bacterium TAV2] gi|224801873|gb|EEG20157.1| excinuclease ABC, B subunit [Opitutaceae bacterium TAV2] Length = 686 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/662 (52%), Positives = 455/662 (68%), Gaps = 9/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ DY P+GDQP AI L+ I + K Q LLGVTGSGKTFTMA VI RP +++ Sbjct: 2 LFKLHADYQPTGDQPQAIEALVNSIQAGNKHQTLLGVTGSGKTFTMANVIARCDRPTLII 61 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+ +DTYIEK+SSINE+I+R+R Sbjct: 62 SHNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSINEEIERLR 121 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SL+ R D IVV+SVSCIYG+GS E + M +QL+ GD+ + LL+ LV+ Y+R Sbjct: 122 ISAASSLVSRRDVIVVASVSCIYGLGSPEDFQAMRIQLRRGDAFGRNVLLTRLVENLYER 181 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D + RG FRV GD ++I P++LE RV +G++IE +SEF PLTG IR +E + Sbjct: 182 NDYDLKRGAFRVRGDVVDIMPAYLEQ-GLRVEFWGDEIEAMSEFDPLTGNVIRALEQFDL 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + YVT + L+ A+ I+ EL R+ E+EG+ LEAQR+ R YDLEML+ G C Sbjct: 241 YPANQYVTSKDKLDAALSAIRTELDERVAFFEREGKYLEAQRIRMRTNYDLEMLQEMGFC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR G+ P L ++ +D LL +DESH T+PQI GMY GD RK L Sbjct: 301 NGIENYSRHLAGRAAGDRPICLVDFFLKDFLLMIDESHATVPQIGGMYNGDQARKQNLVS 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP F E+ + T+ VSATP +ELE+ ++ EQ+IRPTGL+DP + Sbjct: 361 FGFRLPSALDNRPQSFAEFVSITGQTLYVSATPAKYELEKST-VVAEQVIRPTGLLDPGI 419 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +IR+ + QVE++ E A + G R+L+T LTKR++EDLT +L E IRV Y+HS++ + Sbjct: 420 DIRTTKGQVENLIAEARRAVEAGERVLVTTLTKRLSEDLTAFLRESKIRVEYLHSDIDAI 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R+LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT GRAA Sbjct: 480 ERVEILRNLRQGNFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLIQTAGRAA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPI 736 R+ +VI YAD IT SI+ ++ T RREKQL +N +H I P+SVK + + V D Sbjct: 540 RHEKGRVIFYADNITDSIRRTLEVTRVRREKQLAYNAEHGITPRSVKRAQQSSLHVYDGS 599 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + D N+S+ A+ A + L +M LA+ L FE AA +RD+I L+S Sbjct: 600 GVRDTDDANVSMVAE----GDGDVSAVIAELEDEMTLASSQLEFERAAVLRDQITALRSG 655 Query: 797 PY 798 Y Sbjct: 656 DY 657 >gi|320093713|ref|ZP_08025578.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 178 str. F0338] gi|319979334|gb|EFW10824.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 178 str. F0338] Length = 690 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/670 (51%), Positives = 474/670 (70%), Gaps = 18/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI +L I E+ +L+G TG+GK+ T A +IE +QRPA+V+ Sbjct: 13 FEVVSEYSPSGDQPKAIKELASRIRDGEQDVVLMGATGTGKSATTAWLIEELQRPALVLE 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 73 PNKTLAAQLAAEFRELLPGNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y +++L+ G +++ LL V QY R Sbjct: 133 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMRIDRDALLRRFVAMQYVRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEI P + E++A R+ MFG++I+ ++ +PLTG I V+ ++ Sbjct: 193 DMAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGDVIDEVDRTYLF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+EE++ R+ E +G+LLEAQRL R T+DLEML GSC Sbjct: 252 PASHYVAGEERMKRAIGTIEEEMEERVAWFEGQGKLLEAQRLRMRTTFDLEMLREIGSCA 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI M+ GD RK TL ++ Sbjct: 312 GVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDH 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL++ G +VEQIIRPTGLVDP V Sbjct: 372 GFRLPSAMDNRPLKWDEFTARIGQTVYLSATPGPYELDRSDG-VVEQIIRPTGLVDPLVT 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +++ ++ R+L+T LTK+MAE+LT YL ER +RV Y+HS+V TL Sbjct: 431 VKPTEGQIDDLLEQVRARVEKDERVLVTTLTKKMAEELTTYLAERGVRVEYLHSDVDTLR 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 491 RVELLRELRKGAFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ +V +YADT+T S++ A+ ET RRR+ Q+ +N++H I+P+ ++++I +V D + Sbjct: 551 NVSGEVHMYADTVTDSMREALSETMRRRDLQIAYNREHGIDPKPLRKRIADVTDMLAREQ 610 Query: 737 -----LLED-------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 LLE AA + ++ + ++ L +QM AA +L FE AA Sbjct: 611 IDTESLLEGGYRREKTAAERTAAGARGAAGRAQGDLASLIEELSEQMMTAAAHLQFELAA 670 Query: 785 RIRDEIKRLK 794 R+RDEI+ LK Sbjct: 671 RLRDEIEDLK 680 >gi|225850330|ref|YP_002730564.1| excinuclease ABC subunit B [Persephonella marina EX-H1] gi|225646490|gb|ACO04676.1| excinuclease ABC subunit B [Persephonella marina EX-H1] Length = 662 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/657 (52%), Positives = 464/657 (70%), Gaps = 3/657 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ + P+GDQP AI QL + + K Q+LLG TG+GKTFT+ VIE +P +V Sbjct: 4 TPFKIDMPFPPAGDQPKAINQLYENLKQGVKEQVLLGATGTGKTFTIGNVIEKYGKPTLV 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 + NK LAAQLY E K FP NAVEYFVSYYDYYQPEAYVP D YIEK+SSIN+ IDR+ Sbjct: 64 LTHNKTLAAQLYRELKELFPDNAVEYFVSYYDYYQPEAYVPEKDLYIEKDSSINDAIDRL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSAT+SL+ER D IVV+SVSCIYG+G+ E Y ++ + L +G +E+++LL LV+ QY Sbjct: 124 RHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLHLFVGQQIERQDLLKRLVELQYV 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD++EI PSH ED+ RV FG++IE I+E R + T Sbjct: 184 RDDFSFKRGTFRVKGDTVEILPSHSEDIILRVEFFGDEIESITELDIFNRDIKRKLNTTV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ SHYV PRP + A+K IK +L+ + E K+G+ +EA RL QR YD+EM+ G+ Sbjct: 244 VFPASHYVIPRPDMIEAIKQIKADLEREVEEFRKQGKEIEANRLWQRTNYDIEMMLELGT 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSRY GR PGEPP TL +Y P+D LL VDESHVTIPQ+ MY GD RK L Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLMDYFPDDFLLIVDESHVTIPQVRAMYNGDRRRKDNLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YG+RL S DNRPL+FEE+ I VSATP WE+E+ +G+IVEQIIRPTGL+DP Sbjct: 364 KYGWRLKSAYDNRPLKFEEFVEKIQRAIYVSATPAEWEIERSKGVIVEQIIRPTGLLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V ++ Q++D+ EI ++ R ++ LTK+MAE+L +YL ER+I+ Y+HSE+ T Sbjct: 424 VVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLADYLEERDIKAIYLHSEIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER++II++LR GK+DV+VG+NLLREG+D+PE LVA+LDADK+GFLRS T+LIQ IGRA Sbjct: 484 IERVKIIKELREGKYDVIVGVNLLREGIDMPEVSLVAVLDADKQGFLRSATALIQIIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN K ILYADTIT +++ AI+ET RRR+ Q E+N+++ I P++V + EV D I L Sbjct: 544 ARNVNGKAILYADTITPAMEKAINETERRRKLQKEYNERYGIEPKTVSK---EVKDLISL 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ + + + S++ ++SL KQM A+ FE+AA IRD+I++L+S Sbjct: 601 EEIGIYEMYENLPEDIESEEDLLKQIESLEKQMWEYAEKWEFEKAAEIRDKIEKLRS 657 >gi|167628796|ref|YP_001679295.1| excinuclease abc, b subunit [Heliobacterium modesticaldum Ice1] gi|167591536|gb|ABZ83284.1| excinuclease abc, b subunit [Heliobacterium modesticaldum Ice1] Length = 830 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/595 (56%), Positives = 440/595 (73%), Gaps = 1/595 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ+++++ P GDQP AIA+L++GI + Q LLG TG+GKTFTMA VIE +QRP +V+ Sbjct: 5 LFQLKSEFVPKGDQPQAIARLVEGIEKGMRYQTLLGATGTGKTFTMASVIEKVQRPTLVL 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++R Sbjct: 65 AHNKTLAAQLCAEFKEFFPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 H+AT +L+ER D I+V+SVSCIYG+GS E Y ++ L+ G ++ +L LV QY R Sbjct: 125 HAATAALIERRDVIIVASVSCIYGLGSPEEYLDQMISLRKGQIYDRDAVLRRLVDIQYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I RGTFRV GD +E+FP+ D A R+ FG+++E ISE LTG+ I I Sbjct: 185 NNINFTRGTFRVRGDVVEVFPASYSDRAVRLEFFGDELERISEIDTLTGEVYGERYHISI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + N+HYVT L ++ I+ EL+ RL +++G+L+EAQRL QR YD+EML G C Sbjct: 245 FPNTHYVTNWDKLELSIANIEAELEERLAWFKEQGKLVEAQRLAQRTRYDIEMLREMGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LT R PGEPP TL + P+D LL VDESHVTIPQ+ MY+GD RK TL E Sbjct: 305 TGIENYSRHLTFRPPGEPPYTLMHFFPKDFLLMVDESHVTIPQVGAMYQGDRSRKMTLIE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS DNRPL+F E+ + + VSATP +EL++ + +VEQIIRPTGL+DP + Sbjct: 365 HGFRLPSAADNRPLKFHEFEQMLNQVVFVSATPADYELQRSEQ-VVEQIIRPTGLIDPVI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ EI ++ R+L+T LTK+MAEDLT YL +RVR+MHS+V + Sbjct: 424 DVRPVKGQIDDLLGEIRERIKKDQRVLVTTLTKKMAEDLTAYLRNVGVRVRWMHSDVDAI 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++IIRDLRLG+FDVLVGINLLREGLD+PE GLVAILDADKEGFLRS SLIQTIGRAA Sbjct: 484 ERMQIIRDLRLGEFDVLVGINLLREGLDLPEVGLVAILDADKEGFLRSDRSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 RNV VI+Y D +T+S+Q AIDET RRR Q+ +N++ I PQ+VK+ + VI+ Sbjct: 544 RNVEGTVIMYGDRLTRSMQKAIDETNRRRAIQIAYNEQQGITPQTVKKAVRNVIE 598 >gi|289551380|ref|YP_003472284.1| Excinuclease ABC subunit B [Staphylococcus lugdunensis HKU09-01] gi|315658887|ref|ZP_07911754.1| excision endonuclease subunit UvrB [Staphylococcus lugdunensis M23590] gi|289180911|gb|ADC88156.1| Excinuclease ABC subunit B [Staphylococcus lugdunensis HKU09-01] gi|315496011|gb|EFU84339.1| excision endonuclease subunit UvrB [Staphylococcus lugdunensis M23590] Length = 661 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/660 (53%), Positives = 473/660 (71%), Gaps = 12/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P GDQP AI +++KGI+ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLKSEFEPQGDQPQAIQKIVKGINEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +E+ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERTELLRKLVDVQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ +R E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVLREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTRDEKMQLAIQRIEKELEERLKELRAENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLMFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLGEIQERVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q HN+K+ I PQ++ ++I +VI Sbjct: 546 NDRGEVIMYADKMTDSMKYAIDETQRRREIQTAHNEKYGITPQTIHKRIHDVI------S 599 Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A N +AQ+ + ++KK+ + ++++ K+M AA L+FE+A +RD + LKS Sbjct: 600 ATVENDETNAQEQTTVPKKMTKKERQKTIENIEKEMKKAAKELDFEKATELRDMLFELKS 659 >gi|182415429|ref|YP_001820495.1| excinuclease ABC, B subunit [Opitutus terrae PB90-1] gi|177842643|gb|ACB76895.1| excinuclease ABC, B subunit [Opitutus terrae PB90-1] Length = 677 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/662 (52%), Positives = 459/662 (69%), Gaps = 14/662 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ DY P+GDQP AI QL+ IH+ + Q LLGVTGSGKTFTMA VI +RP +++ Sbjct: 2 LFKLHADYQPTGDQPQAIEQLVASIHAGNRHQTLLGVTGSGKTFTMANVIARCERPTLII 61 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+ +DTYIEK+SSINE+I+R+R Sbjct: 62 SHNKTLAAQLYSEFKNFFPENAVEYFVSYYDYYQPEAYIASSDTYIEKDSSINEEIERLR 121 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SL+ R D +VV+SVSCIYG+GS E ++++ + L+ G+ + + L LV Y R Sbjct: 122 IAATSSLVSRRDVVVVASVSCIYGLGSPEEFTELRIPLRRGEQLGRHRFLERLVDNIYDR 181 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D + RGTFRV GD +++ P++LE RV FG+++E I+EF P++G+ +RN+E + Sbjct: 182 NDYELKRGTFRVRGDVVDVMPAYLEH-GLRVEFFGDEVEAITEFDPVSGKVLRNLEQFDL 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + YVT R L+ A++ IK EL R+ E++G+ LEAQR+ R YDLEML+ G C Sbjct: 241 YPANQYVTSRGRLDPAIRSIKAELDERVAYFEQKGQYLEAQRVRMRTNYDLEMLQEMGFC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR GE P L ++ P+D LL +DESH T+PQI GM+ GD RK TL + Sbjct: 301 NGIENYSRHLTGRKAGERPFCLIDFFPKDFLLMIDESHATVPQIGGMFNGDRARKQTLVD 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRP FEE+ + + VSATP +EL++ ++ EQ++RPTGL+DP + Sbjct: 361 FGFRLPSALDNRPQTFEEFEQITHQALYVSATPAEFELKRST-VVAEQLVRPTGLLDPEI 419 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 IR + QVE++ EI AA G R+L+T LTKR++EDLT YL E IRV Y+HS++ + Sbjct: 420 VIRPTKGQVENLIGEIKAAAAAGERVLVTTLTKRLSEDLTSYLREAKIRVEYLHSDIDAI 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R+LRLG FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+TSL+QT GRAA Sbjct: 480 ERVEILRNLRLGNFDVLIGINLLREGLDLPEVALVAILDADKEGFLRSETSLVQTAGRAA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPI 736 R+ +VI YAD IT+SI+ ++ RREKQL +N +H I P+SVK + + V D Sbjct: 540 RHEKGRVIFYADNITESIRRTVEIVKYRREKQLAYNVEHGITPRSVKRAAQASLHVYDGS 599 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D A +D A + L +M AA L FE AA +RD+I LKS Sbjct: 600 GERDEAAVAEEVD---------DVAAVIAELEDEMQEAAGRLEFERAAVLRDQINALKSG 650 Query: 797 PY 798 Y Sbjct: 651 EY 652 >gi|226950837|ref|YP_002805928.1| excinuclease ABC, B subunit [Clostridium botulinum A2 str. Kyoto] gi|254764903|sp|C1FMK5|UVRB_CLOBJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226842613|gb|ACO85279.1| excinuclease ABC, B subunit [Clostridium botulinum A2 str. Kyoto] Length = 662 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/656 (52%), Positives = 464/656 (70%), Gaps = 6/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + ++P+GDQP AI + KGI REK Q L+GVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G ++ E++ LV+ QY+R Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++IFP+ A RV FG++I+ I EF LTG+ I ++ I I+ Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L A+K I+EEL+ R+ EL + ++LEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L GR G PP TL +Y P+D LLF+DESHVT+PQ+ M GD RK +L EY Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL F+E+ + VSATP +ELE EQ+IRPTGL+DP + Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+Y I ++G RIL+T LTK+MAEDLT+YL E ++ RY+HS++ T+E Sbjct: 423 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II DLR G+F VLVGINLLREGLDIPE LV ILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N SKVI+Y D ITKS++ I ET RRR+ Q+E+N+++ I P+++ + I EVI + D Sbjct: 543 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEYGIVPKTIIKDIREVIQ---ISD 599 Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A D +L ++ ++M AA NL FE+AA +RD I +LK Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655 >gi|228474442|ref|ZP_04059177.1| excinuclease ABC subunit B [Staphylococcus hominis SK119] gi|314936942|ref|ZP_07844289.1| excinuclease ABC subunit B [Staphylococcus hominis subsp. hominis C80] gi|228271801|gb|EEK13148.1| excinuclease ABC subunit B [Staphylococcus hominis SK119] gi|313655561|gb|EFS19306.1| excinuclease ABC subunit B [Staphylococcus hominis subsp. hominis C80] Length = 661 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/655 (52%), Positives = 471/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI ++++G+ + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLNSEFEPQGDQPQAIKKIVEGVKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++++ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL+ E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELKAENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GM+ GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDQARKKVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSAMDNRPLKFEEFEQKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTKNQIDDLLSEIQERIDRNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q AIDET RRRE Q+ HN+K+ I P+++ +KI +VI + D Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQMTHNEKYGITPKTINKKIHDVISATVDND 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++KK+ + ++++ K+M AA +L+FE A +RD + LK+ Sbjct: 606 ETNEKQQTEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKA 659 >gi|254445611|ref|ZP_05059087.1| excinuclease ABC, B subunit [Verrucomicrobiae bacterium DG1235] gi|198259919|gb|EDY84227.1| excinuclease ABC, B subunit [Verrucomicrobiae bacterium DG1235] Length = 668 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/659 (52%), Positives = 464/659 (70%), Gaps = 8/659 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F++ ++Y P+GDQP AI LL I + K Q LLGVTGSGKTF++A VI + RPA+ Sbjct: 1 MGLFKLSSEYKPTGDQPVAINSLLDSIRAGNKFQTLLGVTGSGKTFSIANVIAELDRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++IDR Sbjct: 61 VISHNKTLAAQLYSEFKRFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDR 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R S T SL+ R D IVV+SVSCIYG+GS E + ++++ LK+G+ + LL LV+ Y Sbjct: 121 LRISTTSSLISRRDVIVVASVSCIYGLGSPEDFQELMIPLKVGEEFGRDRLLGDLVEILY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D+ + RG FRV GD +++ P++LE R+ +G++IE +SEF PLTG I+ ++ Sbjct: 181 ERNDVSLERGRFRVRGDVVDVMPAYLEK-GLRIEFWGDEIERLSEFDPLTGNVIQELQQF 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y + +VT + + +A+ IK ELK R+ E E +G+LLEAQR+ R YDLEM++ G Sbjct: 240 DLYPANQFVTTKEKMESAVGLIKSELKERVAEFESKGQLLEAQRISMRTNYDLEMMQEVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYS +L+GR GE P L ++ +D LL VDESHVTIPQI MY GD RK TL Sbjct: 300 FCNGIENYSMHLSGRKAGERPFCLIDFFHKDMLLIVDESHVTIPQIGAMYAGDRSRKTTL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS ++NRP+ F+E+ + T+ V+ATP +E E+ + +I EQ+IRPTGL+DP Sbjct: 360 VEHGFRLPSALENRPMNFQEFMEVTGQTVYVTATPAKFEREKSE-VIAEQVIRPTGLLDP 418 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 V IR + QVED+ EI A +G R+L+T LTKR++ED+T YL E++I V Y+HS++ Sbjct: 419 VVTIRPMKGQVEDLITEIRKAIDKGERVLVTTLTKRLSEDITAYLREKDISVEYLHSDID 478 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 LER+EI+R LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSL QT GR Sbjct: 479 ALERVEILRRLRAGRFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLTQTAGR 538 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR+ N +VI YAD IT SI+ ++ T RR KQ+E+N +H I P+SV E + +L Sbjct: 539 AARHENGRVIFYADVITDSIRRTVETTEYRRSKQIEYNAEHGITPKSVNRGDQESLRQLL 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E+ A++ I + +A + L +M AA L FE+AA +RD+I LKS Sbjct: 599 EEEDASSAIIVGEDD------DVQAVIDELTVEMDEAAAKLEFEKAALLRDQIDSLKSG 651 >gi|323438709|gb|EGA96450.1| excinuclease ABC subunit B [Staphylococcus aureus O11] Length = 661 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L E +D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFESDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|223042856|ref|ZP_03612904.1| excinuclease ABC, B subunit [Staphylococcus capitis SK14] gi|314933067|ref|ZP_07840433.1| excinuclease ABC subunit B [Staphylococcus caprae C87] gi|222443710|gb|EEE49807.1| excinuclease ABC, B subunit [Staphylococcus capitis SK14] gi|313654386|gb|EFS18142.1| excinuclease ABC subunit B [Staphylococcus caprae C87] Length = 661 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/659 (53%), Positives = 468/659 (71%), Gaps = 10/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +++ G+++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLNSEFEPQGDQPQAIQKIVDGVNNGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPFTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP ++ Sbjct: 367 GFRLPSALDNRPLKFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQERIDRDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q AIDET RRR+ Q HNK+H I P+++ +KI +VI + D Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRRDIQTAHNKEHGITPKTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D +Q L KK K ++++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ETN-----DQKQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659 >gi|78357139|ref|YP_388588.1| excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90110885|sp|Q30ZK3|UVRB_DESDG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|78219544|gb|ABB38893.1| Excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 682 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/673 (52%), Positives = 466/673 (69%), Gaps = 18/673 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F+++++Y P GDQP AI QL I + Q+LLGVTGSGKTFTMA IE QRPA++ Sbjct: 4 SVFRIESEYVPRGDQPEAITQLSDNIRAGVAHQVLLGVTGSGKTFTMAHTIERCQRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLY+EF+ FPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++ Sbjct: 64 LAPNKTLAAQLYNEFRALFPHNAVEYFVSYYDYYQPEAYVPTSDTYIEKDSSINDNIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RH+AT +LL R D I+++SVSCIYG+GS E Y++M++ ++ G + L+ LV QY+ Sbjct: 124 RHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKMVIPVEAGQHMSMDSLIGRLVDVQYE 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTFRV GD +E+ P++ + A R+ FG++I+ I E PLTG + +V Sbjct: 184 RNDYDFHRGTFRVRGDVLEVIPAYHHERALRLEFFGDEIDSIKEIDPLTGNVLGDVGKTV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SHYV+ R LN A+ I+EEL++RL E + RL+EAQRLEQR DLEM+E G Sbjct: 244 IYPASHYVSDRDNLNRAVSDIREELRLRLEEYRQGNRLVEAQRLEQRTMLDLEMIEEMGY 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+L GR GEPP L +Y P++ +LFVDESH+T+ Q+ MY+GD RK TL Sbjct: 304 CTGIENYSRHLDGRTAGEPPACLLDYFPDNFILFVDESHITVSQVGAMYKGDRSRKQTLV 363 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL F E+ + VSATP WEL++ +GI+VEQIIRPTGL+DP Sbjct: 364 DFGFRLPSALDNRPLEFSEFEKRLNQVVYVSATPSRWELDRSEGIVVEQIIRPTGLLDPL 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 E+R + Q+ED+ E + R+L+T LTKRMAEDLTEYL + RY+HS++ T Sbjct: 424 TEVRPTKGQMEDLMTECRSRTARDERVLVTTLTKRMAEDLTEYLTSMGVSARYLHSDIDT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+ II+ LR +FDVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQT GRA Sbjct: 484 MERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ +VI+YAD++T+S+ A+ ET RRREKQ +N++H I P SV++ + D L Sbjct: 544 ARNVDGRVIMYADSVTRSMTAAMQETERRREKQRLYNEEHGIEPVSVRKSLETPFD-TLY 602 Query: 739 EDAATT-----------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 DA + + D +S ++ ++ L ++M +A +L FE Sbjct: 603 SDARSAAAKGRGKGRGRQAAPAQTAAEDTTAYGISAEELGGLIQRLEREMRESARDLEFE 662 Query: 782 EAARIRDEIKRLK 794 +AA +RD I+ L+ Sbjct: 663 KAAELRDRIRMLR 675 >gi|254526928|ref|ZP_05138980.1| excinuclease ABC, B subunit [Prochlorococcus marinus str. MIT 9202] gi|221538352|gb|EEE40805.1| excinuclease ABC, B subunit [Prochlorococcus marinus str. MIT 9202] Length = 679 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/670 (51%), Positives = 464/670 (69%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++Q Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+ RPA+V+A Sbjct: 4 YKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G S+ + L SLV+ QY R Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI I RG FR+ GD +EI P++ ED R+ FG+++E I P TG+ + ++E + +Y Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIEFFGDEVEAIRYIDPTTGEILESLEQVSVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ I+ ELK +L + EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLEKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR G PP L +Y P+D LL VDESHVT PQ+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ +SATPG WEL+QC G +EQ+IRPTG++DP ++ Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDPVID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+ EI + A++ R+L+T LTKRMAEDLT++L E +RVRY+HSE+ ++E Sbjct: 423 VRPSEGQIEDLLSEIRIRAKKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V +LYAD T S++ AI ET RRR Q ++N+ + I P+ +KI I L Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEAA 784 + +++ K + L S L +M AA LNFEEAA Sbjct: 603 RKLDADGLSKDLINIVHNKTDSILNSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 ILRDRIKKLR 672 >gi|172040811|ref|YP_001800525.1| excinuclease ABC subunit B [Corynebacterium urealyticum DSM 7109] gi|171852115|emb|CAQ05091.1| excinuclease ABC, subunit B [Corynebacterium urealyticum DSM 7109] Length = 710 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/672 (51%), Positives = 474/672 (70%), Gaps = 20/672 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAIA+L + ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISEYEPAGDQPAAIAELDERLNRGERDVVLMGATGTGKSATAAWLIEQQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V L++ + V++ + L LV QY R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLRVDEEVDRDQFLRLLVDIQYDRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+++I P++ E++A RV FG+D++ + +PLTG IR V+ ++I+ Sbjct: 208 DVSFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDDVDALYYIHPLTGDVIREVDELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + AM+ I+EEL RL +LE G+LLEAQRL R YDLEM++ G Sbjct: 267 PATHYVAGPERMEKAMQAIREELAERLEDLENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L E+ Sbjct: 327 GIENYSRHIDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ + + +SATPG +E+ QG VEQ+IRPTGLVDP VE Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEFVEQVIRPTGLVDPKVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ +EI + R+L+T LTKRMAEDLT+YL E +RVRYMHS++ TL+ Sbjct: 447 VRPTEGQIDDLIEEIRKRTDKDERVLVTTLTKRMAEDLTDYLLEHGVRVRYMHSDIDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ +VI+YAD +T+S+ AIDET RRR KQ+ +N++H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADNVTESMSNAIDETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVEEFS 626 Query: 737 --------LLEDAATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFE 781 + +A+T + D ++ +G ++ L QM +A L FE Sbjct: 627 EGYGEPGSEVAGSASTGVEGDMATFGRAEDRGDMARPQLEKLIEGLTAQMKESARELKFE 686 Query: 782 EAARIRDEIKRL 793 A R+RDEI L Sbjct: 687 LAGRLRDEIADL 698 >gi|301167406|emb|CBW26988.1| UvrABC system protein B [Bacteriovorax marinus SJ] Length = 669 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/664 (53%), Positives = 463/664 (69%), Gaps = 14/664 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F +Q++++P GDQP AI L + EK Q LLGVTGSGKTFTMA VI+ + + ++ Sbjct: 6 SVFNIQSEFNPCGDQPEAIKNLTNKFSAGEKEQTLLGVTGSGKTFTMAHVIQNLGKKTLI 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY+EF+ FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N++ID++ Sbjct: 66 LAHNKTLAAQLYAEFREFFPNNAVEYFVSYYDYYQPEAYVPGTDTFIEKDASVNDEIDKL 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSAT++LLER+D IVV+SVSCIYGIGS + Y + L + D +++ ELL LV Q++ Sbjct: 126 RHSATKNLLERDDVIVVASVSCIYGIGSPDEYESQKINLFVDDEMDRDELLKDLVSIQFQ 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI RG FRV GD +E+FP+ E R+ F + IE IS PL G+ ++N+ I Sbjct: 186 RNDIDFSRGCFRVRGDLVEVFPASEESDVIRIEFFDDTIESISIVDPLRGKVLQNLNKIT 245 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY SHYV L A+ IK EL+ RL EL + +L+E QRLEQR DLEM+E G Sbjct: 246 IYPKSHYVVSEKKLENAISTIKLELRERLQELGAQEKLVERQRLEQRTLLDLEMMEEMGF 305 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+LTG G+PPPTL ++ + L+ +DESH+T+ Q+ GMYRGD RK L Sbjct: 306 CSGIENYSRHLTGSKEGDPPPTLIDFFKNNFLMIIDESHITVSQVGGMYRGDRARKQNLV 365 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL F E+ + VSATPG +EL + G EQ+IRPTGL+DP Sbjct: 366 DFGFRLPSALDNRPLNFPEFESKLDQVLYVSATPGDYELTKTSGEYTEQVIRPTGLLDPT 425 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +EIR A +QV+D+ E+ ++ R+L+T LTK++AE+LT Y I+V+Y+HS++ T Sbjct: 426 IEIRDASSQVDDLLVEVRKIIKKSQRVLITTLTKKLAEELTHYYKGAGIKVKYLHSDIDT 485 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER+EIIRDLRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRA Sbjct: 486 LERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 545 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPIL 737 ARN K ILYA TKS++ AI ET RRR Q E+N+++ I P ++ +K+ VI+ Sbjct: 546 ARNAEGKAILYAYKNTKSMEKAIFETKRRRAIQEEYNQENGITPVTISKKVSGGVIET-- 603 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ-------MHLAADNLNFEEAARIRDEI 790 L A ++ + SK G+ KSL KQ M +A+ L+FE AA++RDEI Sbjct: 604 LRGAKGNKVAKGPK----SKLSGELDAKSLDKQIEELTSKMKMASRELDFEFAAKLRDEI 659 Query: 791 KRLK 794 K LK Sbjct: 660 KSLK 663 >gi|70727132|ref|YP_254046.1| excinuclease ABC subunit B [Staphylococcus haemolyticus JCSC1435] gi|90111053|sp|Q4L4I5|UVRB_STAHJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|68447856|dbj|BAE05440.1| exinuclease ABC subunit B [Staphylococcus haemolyticus JCSC1435] Length = 661 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/659 (53%), Positives = 472/659 (71%), Gaps = 10/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +++KG+ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLNSEFDPQGDQPQAIEKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL+ E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKIAIERIEKELEERLKELKDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GM+ GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+FEE+ + VSATPG +E+E +I EQIIRPTGL+DP ++ Sbjct: 367 GFRLPSAMDNRPLKFEEFEQKTNQLVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPKID 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTKNQIDDLLSEIQERIDRDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q A+DET RRR+ Q HN+K+ I P+++ +KI +VI + D Sbjct: 546 NEKGEVIMYADKITDSMQYALDETQRRRDIQTAHNEKYGITPKTINKKIHDVISATV--D 603 Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 TN + QQ L KK K ++++ K+M AA +L+FE+A +RD + LKS Sbjct: 604 NDETN---EKQQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKS 659 >gi|297564591|ref|YP_003683563.1| excinuclease ABC subunit B [Meiothermus silvanus DSM 9946] gi|296849040|gb|ADH62055.1| excinuclease ABC, B subunit [Meiothermus silvanus DSM 9946] Length = 668 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/647 (53%), Positives = 466/647 (72%), Gaps = 9/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AIAQL + I E+ LLG TG+GKT TMA+ I + RPA+VMAPNK+LAAQ Sbjct: 9 PKGDQPKAIAQLTEAIQDGERFVTLLGATGTGKTVTMAQTIAKLGRPALVMAPNKVLAAQ 68 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L SEF+ FP NAVEYF+SYYDYYQPEAYVP D +IEK++SIN +I+R+RHS TRSLL Sbjct: 69 LASEFRELFPENAVEYFISYYDYYQPEAYVPGRDLFIEKDASINPEIERLRHSTTRSLLT 128 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+GS E Y M + +++G + ++ +L LV QY+R D+ + GT Sbjct: 129 RRDVIVVASVSAIYGLGSPEDYKNMSLVVEVGQDLPREAILERLVDLQYERGDLQLEPGT 188 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ +E++P++ E R+ M+G+ +E IS +P+TG++++++ + +HY TP Sbjct: 189 FRAKGEVLEVWPAY-ETEPIRIEMWGHTLERISVTHPVTGERLKDLPGFVLLGATHYATP 247 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 L A+ IK +L++RL ELE++G+LLEAQRL++R YDLEMLE G+C IENYSRY Sbjct: 248 EARLKEAIPQIKADLEVRLSELEEQGKLLEAQRLKERTLYDLEMLEVMGTCPGIENYSRY 307 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 L+G+ PGEPP TL +Y PED L F+DESHVT+PQ+ GMY GD+ RK TL +YGFRLPS + Sbjct: 308 LSGKAPGEPPYTLLDYFPEDYLTFLDESHVTVPQLRGMYNGDYMRKKTLVDYGFRLPSAL 367 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRF E+ I VSATPG +E ++ G I+EQIIRPTGL+DP V I+SA+ Q+ Sbjct: 368 DNRPLRFNEFLERVGQVIFVSATPGPYE-QEVSGRIIEQIIRPTGLLDPKVTIKSAQGQI 426 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 ED+ I + + R+L+TVLT RMAE+LT YL E IR RY+H E+ ER ++RDL Sbjct: 427 EDLMGAIRTRSAKKERVLVTVLTVRMAEELTNYLVEHGIRARYLHHELDAFERQALLRDL 486 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG FD LVGINLLREGLD+PE LVAILDADK GFLRS+ SLIQTIGRAARN +V L Sbjct: 487 RLGHFDCLVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAEGEVYL 546 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YA+T+++++++A++ET RRR Q +N++H I PQ+V++ + +VI P E+ AT Sbjct: 547 YAETVSEAMRIAVEETNRRRAIQEAYNQEHGITPQTVQKSVRKVIKPDDYEEEAT----- 601 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 Q L + + L +L ++M A++ L+FE AA IRD+++ L++ Sbjct: 602 --QALLERPEDLREALLNLEEEMWRASEALDFERAALIRDQMRSLEA 646 >gi|206890241|ref|YP_002248529.1| excinuclease ABC, B subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|254764917|sp|B5YJW4|UVRB_THEYD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|206742179|gb|ACI21236.1| excinuclease ABC, B subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 671 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/659 (54%), Positives = 475/659 (72%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ T + P GDQP AI QL++GI K Q+LLGVTGSGKTFT+A VIE + +P +V+A Sbjct: 4 FKIYTSFKPKGDQPKAIKQLVEGIKKGYKHQVLLGVTGSGKTFTIANVIEKVNKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FP+NAVEY+VSYYDYYQPEAY+P TDTYIEK++ IN+ IDRMRH Sbjct: 64 HNKTLAAQLYGELKELFPYNAVEYYVSYYDYYQPEAYIPETDTYIEKDALINDDIDRMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+L R D IVV+SVSCIYGIGS + Y M V L+ G E+ +L LV+ Y R Sbjct: 124 SATLSVLTRQDVIVVASVSCIYGIGSPDDYMSMHVTLEEGMKTERDAMLKKLVEILYIRA 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + RG FRV GD ++IF SH D A+RV F ++I+ I E PLTG + + ++ I I Sbjct: 184 EEEFRRGAFRVRGDVVDIFASHCLDKAYRVEFFDDEIDAIYEIDPLTGSRQKRLQRIFIP 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSH+VTP P L A++ I+EEL+ R+ ++ G L A+R+E+R +D+E+L G C Sbjct: 244 PNSHWVTPEPRLKKALETIEEELQERIKYFKERGEELFAERIEKRTRFDMELLSQFGHCH 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-----PEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 IENYSR+L+GR PGEPP TL +YI D L +DESHVT+PQI GMY GD RK Sbjct: 304 GIENYSRHLSGRLPGEPPFTLIDYIYAGPSKGDFLTVIDESHVTVPQIGGMYEGDRSRKQ 363 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL EYGFRLPS +DNRPL F+E+ I VSATPG +E+E+ G IVEQIIRPTGLV Sbjct: 364 TLVEYGFRLPSALDNRPLTFKEFEHRMNYVIYVSATPGDYEIEKSGGRIVEQIIRPTGLV 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP +E+R A QVED+ +EI+ +G R+L+T +TK+MAEDLT+Y I+ +Y+HS+ Sbjct: 424 DPKIEVRPATNQVEDLLEEIHKRVSRGERVLVTTITKKMAEDLTDYYTTVGIKAKYLHSD 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + TLER+EI++DLRLGKFDVL+G+NLLREGLD+PE LVAI DADKEGFLRS+ SLIQT Sbjct: 484 IDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFDADKEGFLRSERSLIQTA 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRA+RN+N VI YADT+T S++ AI+ET RRRE Q+++NKK+ I+P++VK KI +++ Sbjct: 544 GRASRNINGTVIFYADTVTDSMKKAIEETERRREIQMKYNKKNGISPETVKSKIKDILSS 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I +D T ++ ++ + + + +K L ++M AA+NL FE+AA IRD+I ++K Sbjct: 604 IYEKDYVTVDV---VKEEAEEYELNEETIKKLEQEMKHAAENLEFEKAAEIRDKIFKIK 659 >gi|294786797|ref|ZP_06752051.1| excinuclease ABC subunit B [Parascardovia denticolens F0305] gi|315226426|ref|ZP_07868214.1| excision endonuclease subunit UvrB [Parascardovia denticolens DSM 10105] gi|294485630|gb|EFG33264.1| excinuclease ABC subunit B [Parascardovia denticolens F0305] gi|315120558|gb|EFT83690.1| excision endonuclease subunit UvrB [Parascardovia denticolens DSM 10105] Length = 704 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/685 (52%), Positives = 474/685 (69%), Gaps = 35/685 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L + +++ E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 15 FVVKSPYQPSGDQPQAIEELAERLNNGESDVVLMGATGTGKTATTAWLIEKLQRPTLILE 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAYVP+TDT+IEK+SSIN+ ++R+RH Sbjct: 75 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYVPQTDTFIEKDSSINDDVERLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D +VVS+VSCIYG+G+ E Y+ ++ L GD + + ELL + VK QYKR Sbjct: 135 AATANLLTRRDTVVVSTVSCIYGLGTPEEYASQMLFLHEGDELNRDELLRTFVKMQYKRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG+ I +V I I+ Sbjct: 195 DLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGEIIDHVTNIHIF 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV LN AMK IKEEL R+ E +K+G+LLEAQRL+ R TYDLEML G+C Sbjct: 254 PATHYVAGPDRLNRAMKTIKEELDERVAEFKKQGKLLEAQRLQMRTTYDLEMLAQIGTCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESH T+PQI MY GD RK TL EY Sbjct: 314 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHQTVPQIGAMYEGDASRKRTLVEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +EE+ T+ +SATPG +EL G+ VEQIIRPTGL+DP VE Sbjct: 374 GFRLPSAMDNRPLTWEEFQQHIGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPQVE 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+MAEDLT+YL +R+I+V Y+HS+V TL Sbjct: 433 VRPVDGQIDDLLGEIKDRVSRNERVLVTTLTKKMAEDLTDYLLDRDIKVEYLHSDVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 493 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV VI+YAD T+++ AIDET RRRE Q+ +NK+H I+PQ + +KI +V D + ED Sbjct: 553 NVQGTVIMYADKETEAMAKAIDETNRRREVQMAYNKEHGIDPQPLIKKISDVNDMLAKED 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769 T + S K G +HL + L + Sbjct: 613 IDTETLL--ETGYRNSGKAGNSHLGVPDLDRKTMDGNRQRLMEAGLPAQDLADLIRQLSE 670 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QMH AA+ L FE AAR+RDE++ LK Sbjct: 671 QMHTAAEQLQFELAARLRDEVQDLK 695 >gi|282916100|ref|ZP_06323863.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus D139] gi|283769921|ref|ZP_06342813.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus H19] gi|282320048|gb|EFB50395.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus D139] gi|283460068|gb|EFC07158.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus H19] Length = 663 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 9 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 69 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 249 PASHFVTREEKLKVAIELIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661 >gi|154508848|ref|ZP_02044490.1| hypothetical protein ACTODO_01358 [Actinomyces odontolyticus ATCC 17982] gi|153798482|gb|EDN80902.1| hypothetical protein ACTODO_01358 [Actinomyces odontolyticus ATCC 17982] Length = 689 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/674 (51%), Positives = 471/674 (69%), Gaps = 22/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L I E+ +L+G TG+GK+ T A +IE +QRPA+V+ Sbjct: 8 FEVISPYTPSGDQPKAIRELAARIRDGEQDVVLMGATGTGKSATTAWLIEELQRPALVLE 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH Sbjct: 68 PNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y +++L+ G +++ LL V QY R Sbjct: 128 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDSLLRRFVAMQYVRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEI P + E++A R+ MFG++IE ++ +PLTG I +V+ ++ Sbjct: 188 DLAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIESLAVLHPLTGDVIDHVDHTYLF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL RL + +LLE QRL R T+DLEML+ GSC Sbjct: 247 PASHYVASEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLKEIGSCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI M+ GD RK TL +Y Sbjct: 307 GVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +ELE+ G+ VEQIIRPTGLVDP V Sbjct: 367 GFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDGV-VEQIIRPTGLVDPLVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +++ + ++ R+L+T LTK+MAE+LT YL ER ++V Y+HS+V TL Sbjct: 426 VKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSDVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LRLG FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD +T S+ AI ET RRRE Q+ +NK+H I+PQ +++KI +V D + E Sbjct: 546 NVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTDMLAREQ 605 Query: 741 AATTNISIDAQQLSLSKKK-------GKAHLKSLR-------------KQMHLAADNLNF 780 T + + SK++ G+A R QM AA +L F Sbjct: 606 VDTQTLLEGGYRKEKSKRERSDATGGGRAVTSGQRAEAELAELIEELSAQMMTAAQHLQF 665 Query: 781 EEAARIRDEIKRLK 794 E AAR+RDEI+ LK Sbjct: 666 EVAARMRDEIEDLK 679 >gi|160878417|ref|YP_001557385.1| excinuclease ABC subunit B [Clostridium phytofermentans ISDg] gi|160427083|gb|ABX40646.1| excinuclease ABC, B subunit [Clostridium phytofermentans ISDg] Length = 662 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/654 (53%), Positives = 463/654 (70%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP A+ L+KG + + LLGVTGSGKTFTMA VI+ + RP +++A Sbjct: 4 FKLVSEFAPTGDQPEALEALVKGFEEGNQFETLLGVTGSGKTFTMANVIQRLNRPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+GS Y M + L+ G ++ ++L LV+ QY R Sbjct: 124 SATAALTERRDVIIVASVSCIYGLGSPVDYQNMTLSLRPGMIRDRDDVLRRLVEIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EIFP D+A+RV FG+++E I+E LTG+ +E + I+ Sbjct: 184 DMDFKRGTFRVRGDVVEIFPITGTDLAYRVEFFGDEVERITEIDVLTGEIKCTLEHMVIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + L A+ I+EEL+ R+ + E +LLEAQR+ +R +D+EML TG C Sbjct: 244 PASHYVVSKDNLERAIVNIEEELEDRIRYFKSEDKLLEAQRISERTHFDIEMLRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS +L G P P TL +Y P+D L+ VDESH+TIPQ+ GMY GD RK TL ++ Sbjct: 304 GVENYSMHLAGLTPESTPHTLIDYFPDDFLIMVDESHITIPQVRGMYAGDQSRKTTLVDF 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS NRPL F E+ + VSATP +E + + + EQIIRPTGL+DP VE Sbjct: 364 GFRLPSAKSNRPLNFTEFESKINQMLFVSATPNVYEKDH-ELLRAEQIIRPTGLLDPVVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++++T LTKRMAEDLT+Y+ E IR++Y+HS++ TLE Sbjct: 423 VRPVHGQIDDLVSEVNKETAKKNKVMITTLTKRMAEDLTDYMRELGIRIKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+R+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIIRDMRMDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+ A+ ET RRR+ Q E+N+KH I PQ++K+K+ E+I Sbjct: 543 NAEGRVIMYADRITDSMDKALRETERRRKIQDEYNEKHGITPQTIKKKVRELISISKKVS 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +++I + S+S+K+ +A K L K+MH AA LNFE AA +RD++ LK Sbjct: 603 KEMYDMNIKDYE-SMSRKELEAVAKKLTKEMHTAAAELNFELAAELRDKLLELK 655 >gi|58337009|ref|YP_193594.1| excinuclease ABC subunit B [Lactobacillus acidophilus NCFM] gi|227903571|ref|ZP_04021376.1| excinuclease ABC subunit B [Lactobacillus acidophilus ATCC 4796] gi|81311493|sp|Q5FL61|UVRB_LACAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|58254326|gb|AAV42563.1| excinuclease ABC (subunit B) [Lactobacillus acidophilus NCFM] gi|227868458|gb|EEJ75879.1| excinuclease ABC subunit B [Lactobacillus acidophilus ATCC 4796] Length = 683 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/659 (51%), Positives = 466/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQQQAINKLTAGFEKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND IVV+SVSCIYG+G + Y++ ++ + G E+ LL LV QY R Sbjct: 130 ATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+RV FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRVEFFGDEIDRIVEIDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKVGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLAEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI P Sbjct: 549 NANGEVIMYADTITDSMKAAIEATQRRRKLQEEFNKEHGIVPKTIIKPVHDVISITKPSE 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 T+ D L+ K+ K +K+L++QM AA L+FEEAA +RD I L+SS Sbjct: 609 DSKKEKTDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667 >gi|317968351|ref|ZP_07969741.1| excinuclease ABC subunit B [Synechococcus sp. CB0205] Length = 669 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/660 (53%), Positives = 455/660 (68%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P GDQP AI L+ G+ S E+ Q LLG TG+GKTFT+A VI RPA+V+A Sbjct: 5 FEIHAPYEPKGDQPEAIKALVAGVESGERYQTLLGATGTGKTFTIANVIAKTGRPALVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 65 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 125 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNLRSSLRDLVNNQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++E+I IY Sbjct: 185 DLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLESISIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A+K I+ EL+ RL L ++G+LLEAQRLEQR TYDLEMLE G C Sbjct: 244 PAKHFVTPKERLEDAIKAIRSELRERLDVLNEQGKLLEAQRLEQRTTYDLEMLEQVGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y PED LL VDESHVT Q+ MY GD RK L E+ Sbjct: 304 GVENYARHLAGREAGTPPECLIDYFPEDWLLVVDESHVTCSQLQAMYNGDQARKGVLIEH 363 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ +E W R +I VSATPG WEL+Q +V+Q+IRPTG++DP V Sbjct: 364 GFRLPSAADNRPLKGDEFWEKAR-QSIFVSATPGDWELKQSDSEVVQQVIRPTGVLDPIV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI A++ R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++ Sbjct: 423 EVRPTDGQVDDLLGEIRTRAEKKERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHSI 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 483 ERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 R+V +LYAD +T S+ AI ET RRR Q +N+KH I P ++ I L Sbjct: 543 RHVEGVALLYADNLTDSMAKAISETERRRAIQQAYNEKHGITPTPAGKRGGNSILAFLEV 602 Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L D + A+ + ++ L +M AA NL+FEEAA +RD IK L+ Sbjct: 603 SRRLNDEQLEQATEQAEHNDVPLDALPELIQQLEDKMKSAAKNLDFEEAANLRDRIKSLR 662 >gi|167463462|ref|ZP_02328551.1| excinuclease ABC subunit B [Paenibacillus larvae subsp. larvae BRL-230010] Length = 667 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/654 (54%), Positives = 464/654 (70%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AIA+L++G+ + Q LLG TG+GKTFT A+VI + RP +V+A Sbjct: 13 FELVSEYSPQGDQPKAIAELVEGVKQGKAHQTLLGATGTGKTFTAAQVIAQLNRPTLVIA 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+NAV YFVSYYDYYQPEAY+P +DTYIEK+SSIN++ID++RH Sbjct: 73 HNKTLAAQLASEFKEFFPNNAVSYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDKLRH 132 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D IVV+SVSCIYG+GS + Y +++ L++G + ++L LV QY+R Sbjct: 133 SATSSLFERRDIIVVASVSCIYGLGSPKEYGSLLLSLRVGMEKSRNDILRRLVDIQYQRN 192 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +RGTFRV GD IEIFP+ + A RV +FG++IE I+E LTG+ + E I I+ Sbjct: 193 DMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEILGEREHIAIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT A+K I+ EL+ RL EL +G+LLEAQRLEQR YD+EM+ G C Sbjct: 253 PASHFVTHEDKTKLAVKNIERELEGRLEELRGQGKLLEAQRLEQRTRYDMEMMLEMGFCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L E+ Sbjct: 313 GIENYSGPLTFRERGSTPYTLLDYFPDDMLVMIDESHVTLPQIRAMYNGDQARKTVLVEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ I +SATPG +ELE C +VEQIIRPTGL+DP +E Sbjct: 373 GFRLPSALDNRPLKLEEFEQKVKQAIYISATPGPYELEHCPE-MVEQIIRPTGLLDPIIE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+ + R+L+T LTK+MAEDLT+YL E I+VRY+HS++KTLE Sbjct: 432 VRPTKGQIDDLLAEVQDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLG F VLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 492 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+Y D IT S+ AI ET RRR Q +NK+H I P +V +KI +VI+ + + Sbjct: 552 NSEGRVIMYGDKITDSMDKAIRETERRRAIQEAYNKEHGITPTTVAKKIRDVIEATKVAE 611 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ + + +SK+ ++ L +M AA NL FE AA +RD + LK Sbjct: 612 QKTEYLA-EVKTAKMSKRDRMKLIERLEAEMKEAAKNLQFERAAELRDAVLELK 664 >gi|260887847|ref|ZP_05899110.1| excinuclease ABC subunit B [Selenomonas sputigena ATCC 35185] gi|330838715|ref|YP_004413295.1| excinuclease ABC, B subunit [Selenomonas sputigena ATCC 35185] gi|260862353|gb|EEX76853.1| excinuclease ABC subunit B [Selenomonas sputigena ATCC 35185] gi|329746479|gb|AEB99835.1| excinuclease ABC, B subunit [Selenomonas sputigena ATCC 35185] Length = 682 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/657 (53%), Positives = 466/657 (70%), Gaps = 2/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AI L GI + ++ Q+LLG TG+GKT+T+AK IE +Q+P +V+A Sbjct: 18 FEVSAPFEPMGDQPRAIQDLAAGIENGQEAQVLLGATGTGKTYTIAKTIERVQKPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP N V YFVSYYDYYQPEAY+P TDTYIEK++SIN++ID +RH Sbjct: 78 HNKTLAAQLASEFKAFFPKNYVGYFVSYYDYYQPEAYIPSTDTYIEKDASINDEIDELRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER DCI+V+SVSCIYG+GS ESY +M++ L G +V ++++L LV QY+R Sbjct: 138 SATCSLFERRDCIIVASVSCIYGLGSPESYHEMVLSLHKGQTVVREDILRKLVAIQYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IE+FP+ + A R+ +FG+++E I EF LTG+ ++ Sbjct: 198 DIAFERGRFRVRGDVIEVFPAGWNNRAVRIELFGDEVERILEFDVLTGEIYGERTHSMVF 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + AM I EE ++ ++EG+L+EAQR+EQR YDLEM++ G C Sbjct: 258 PASHYVTKKEDMEIAMAAIDEEKIAQVAHFKEEGKLIEAQRIEQRTNYDLEMMQEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R G P TL +Y P+D L+ +DESHVT+PQ+ M GD RK +L E Sbjct: 318 GIENYSRHLTHRPAGAAPYTLLDYFPDDFLIVMDESHVTMPQLKAMLNGDRSRKISLVEN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I +SATP +ELE+ Q +VEQIIRPTGL+DP VE Sbjct: 378 GFRLPSAFDNRPLSFEEFEQRINQIIYISATPAKYELEKAQQ-VVEQIIRPTGLLDPIVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+ + A++ R+L+T LTK+MAE+LT+YL + +RVRY+HS++ T E Sbjct: 437 VRPLAGQMDDLLSEVRIRAKKDERVLVTTLTKKMAENLTDYLKDMQVRVRYLHSDIATFE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR GKFDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 497 RAEIIHDLRAGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-E 739 N +VILYAD IT S++ A+DET RRR Q +NK+H + P+++ + ++ +I+ L+ E Sbjct: 557 NAGGRVILYADRITDSMKRAMDETERRRTVQQAYNKEHGVTPKTIVKPVVPLIETTLVAE 616 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A+ D ++ L+KK+ ++ +++L QM A+ L FE AA +RD I L+ S Sbjct: 617 SRASYGEDFDGKKKKLTKKQKESLIRTLLAQMQTASRALEFERAAELRDMIIELEGS 673 >gi|153812682|ref|ZP_01965350.1| hypothetical protein RUMOBE_03089 [Ruminococcus obeum ATCC 29174] gi|149831198|gb|EDM86287.1| hypothetical protein RUMOBE_03089 [Ruminococcus obeum ATCC 29174] Length = 662 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/656 (52%), Positives = 460/656 (70%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+KG + + LLGVTGSGKTFTMA VI + +P +V+A Sbjct: 4 FELHSEYKPTGDQPQAIEKLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDTYI K++S N++ID++R Sbjct: 64 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIAKDASTNDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVVSSVSCIYG+G+ E + M++ L+ G ++ E++ L+ QY R Sbjct: 124 SATAALCERKDVIVVSSVSCIYGLGAPEEFFDMMISLRPGMEKDRDEVIKELIDIQYNRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EIFP++ D A RV FG++I+ I+E LTG+ ++ I+ Sbjct: 184 EMDFHRGTFRVRGDVLEIFPANYSDRAIRVEFFGDEIDRITEVDVLTGEIHNELKHAAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A I EE+K ++ + E +L+EAQR+ +R +D+EM++ TG C Sbjct: 244 PASHYVVPQSQIQKAADAILEEMKEQVSYFKSEDKLIEAQRIAERTNFDVEMMKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PP TL +Y +D LL +DESH T+ Q+ GMY GD RK TL +Y Sbjct: 304 GIENYSRHLTGLAPGQPPYTLMDYFKDDFLLIIDESHKTVSQVGGMYAGDQSRKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATPG +E E + + EQIIRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLSFTEFENKLDQVMFVSATPGQYEAEH-ELLRAEQIIRPTGLLDPKVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N +G +IL+T LTKRMAEDLT+Y+ + IRVRY+HS++ TLE Sbjct: 423 VRPVEGQIDDLISEVNKEVDKGHKILITTLTKRMAEDLTDYMKDVGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q +NK+H I P ++K+ + ++I + + Sbjct: 543 NSEGHVIMYADVMTDSMRKAIQETERRRTIQEAYNKEHGITPTTIKKAVRDLI--TVSKA 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T + + S+++K+ + + KQM AA +LNFE+AA +RD++ LK S Sbjct: 601 VAETEDKLKKEPESMTRKELTKLIGQVEKQMRAAAADLNFEQAAELRDKMIELKKS 656 >gi|160914503|ref|ZP_02076718.1| hypothetical protein EUBDOL_00509 [Eubacterium dolichum DSM 3991] gi|158433661|gb|EDP11950.1| hypothetical protein EUBDOL_00509 [Eubacterium dolichum DSM 3991] Length = 658 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/657 (52%), Positives = 459/657 (69%), Gaps = 3/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y P GDQP AI L++G+ +K Q+LLG TG+GKTFT++ VI + +P ++ Sbjct: 5 LFDLVSEYKPQGDQPKAIKALVEGVKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLIF 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 NK LA QLYSEFK FFPHN VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R Sbjct: 65 VHNKTLAGQLYSEFKEFFPHNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDMLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +A S+LER D I+V+SV+CIYG + E Y M +++GD +++KEL+S LV +QY R Sbjct: 125 MAAVNSVLERRDTIIVASVACIYGASNPEQYRDMFFSIRVGDVIDRKELMSKLVARQYTR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD IE+ P H + R+ MF ++IE I E PLTG+ + + Sbjct: 185 NDMELGRGCFRVRGDVIEVAPGHSDAYILRIEMFDDEIERICEVDPLTGKVLNAYTVYVV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y S Y T + +N A I EEL+ RL LE+EG+LLE QRLEQR YD+E L G C Sbjct: 245 YPASGYATKQEIINRAADTIGEELEERLAVLEQEGKLLEKQRLEQRTRYDMEALREFGVC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD RK TL Sbjct: 305 PGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLVN 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ + I VSATPG +ELE+ G IVEQIIRPTGL+DP V Sbjct: 365 YGFRLPSALDNRPMRFEEFEDMIHQAIFVSATPGDYELEKTHGEIVEQIIRPTGLLDPLV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ DEI ++ R+L+T LT RMAEDLT YL + +V ++H EVKT+ Sbjct: 425 SVRPTQGQIDDLTDEIRKRIEKNERVLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKTI 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLR GK+DVL+GINLLREGLDIPE L+AILDADKEGFLRS+ SLIQ IGRAA Sbjct: 485 ERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSERSLIQIIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + +VI+Y D IT S+ A++ET+RRR Q +NK+H+I PQ++ + I EV+ + Sbjct: 545 RNAHGEVIMYGDHITDSMHKALEETSRRRAIQTAYNKEHHITPQTIIKPIHEVVRSKETQ 604 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + I ++ +++KK + +L+K+M AA L+FE AA++RD + L+S+ Sbjct: 605 EMTAKYIH---KKAAVNKKDKDKLIANLQKEMKEAAKVLDFERAAQLRDILFELQST 658 >gi|229829634|ref|ZP_04455703.1| hypothetical protein GCWU000342_01731 [Shuttleworthia satelles DSM 14600] gi|229791623|gb|EEP27737.1| hypothetical protein GCWU000342_01731 [Shuttleworthia satelles DSM 14600] Length = 664 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/654 (51%), Positives = 463/654 (70%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI L+KG ++ L GVTGSGKTFTMA VI+ + +P ++++ Sbjct: 4 FVLHSKYKPTGDQPQAIDALVKGFREGDQFATLKGVTGSGKTFTMANVIQKLNKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+S+IN++ID++R Sbjct: 64 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSAINDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIYGIGS E Y M+V + G +++ + + SL+ QY R Sbjct: 124 SATAALAERRDVVIVASVSCIYGIGSPEDYENMMVSFRPGMEIDRDDAIKSLIDMQYTRS 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++IFP+ D A+R+ FG++I+ I E LT + +E + I+ Sbjct: 184 DLDFSRGTFRVRGDVLDIFPAVASDYAYRLEFFGDEIDRILEIDVLTQEARHEMEHVAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ ++ A K I+EEL R+ ++ +LLEAQR+ +R +D+EML TG C Sbjct: 244 PASHYVVPQEKIDAACKTIQEELDSRIRYFKQNDKLLEAQRIAERTNFDIEMLRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++TG+ PG+ P L +Y +D L+ +DESH+T+PQI GMY GD RK +L +Y Sbjct: 304 GIENYSRHMTGQKPGQAPYCLIDYFGDDFLMIIDESHITLPQIRGMYNGDQARKRSLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATPG +E E + + EQ+IRPTGL+DP + Sbjct: 364 GFRLPSALDNRPLNFAEFENKIDQMLFVSATPGDYEAEH-ELMRTEQVIRPTGLLDPEIF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++G ++L+T LTKRMAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLIGEIRGETKKGHKVLITTLTKRMAEDLTDYMLELGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RAQIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YADTIT S++LAI+ET RRR Q +N++H I PQ++++KI EVI + + Sbjct: 543 NSEGHVIMYADTITDSMRLAIEETNRRRAMQQAYNEEHKITPQTIRKKIQEVI--AISRE 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + + +S ++ + + +RK+M AA +LNFE AA +RD++ L+ Sbjct: 601 LAKEDAAFCKEPEDMSAEELEERILDIRKKMESAAADLNFERAADLRDQLIDLR 654 >gi|151220938|ref|YP_001331760.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus str. Newman] gi|150373738|dbj|BAF66998.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus str. Newman] Length = 661 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TD ++EK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDAFMEKDASINDEIDQVRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +E+E +VEQIIRPTGL+DP +E Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I + D Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605 Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AQ + ++KK+ + + ++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659 >gi|259502733|ref|ZP_05745635.1| excision endonuclease subunit UvrB [Lactobacillus antri DSM 16041] gi|259169378|gb|EEW53873.1| excision endonuclease subunit UvrB [Lactobacillus antri DSM 16041] Length = 698 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/661 (50%), Positives = 466/661 (70%), Gaps = 9/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P+GDQP AI QL KGI + +K Q+LLG TG+GKTFT++ VI + +P ++++ Sbjct: 27 FDLVSDYQPTGDQPEAIDQLTKGIENGDKAQILLGATGTGKTFTISNVIANVNKPTLILS 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+ Sbjct: 87 HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LLERND IVV+SVS I+G+G+ Y +V L +G +++ LL LV QY R Sbjct: 147 AATTALLERNDVIVVASVSSIFGLGNPNEYQNSVVSLHVGQQLDRDFLLRQLVTIQYDRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A R+ FG++I+ I E LTG+ + E + I+ Sbjct: 207 DIDFQRGRFRVHGDVVEIFPASHSETALRIEFFGDEIDRIREVDALTGEVKGDREEVSIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + G+LLEA+R++QR TYD+EM+ G Sbjct: 267 PATHFMTNEDIMDVALPEIERDMKKQVQQFTDAGKLLEAERIQQRTTYDIEMMREMGYTN 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 327 GIENYSRYMDRRKPGEPPYTLLDFFPKDYLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + +SATPG +E+EQ + +QIIRPTGL+DP +E Sbjct: 387 GFRLPSALDNRPLKLGEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTIE 445 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++++ EIN ++ R+ +T LTK+M+EDLT+YL + ++V+Y+HS++KTLE Sbjct: 446 VRPVMGQIDNLVGEINKRIERHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 505 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 506 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 565 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD +T+S+Q AIDET RRR Q+++N++H+I P ++ + I E I ++ Sbjct: 566 NEHGAVIMYADEVTESMQKAIDETKRRRSIQMKYNEEHHITPHTIVKPIQEAISAT--KE 623 Query: 741 AATTNISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T D+ + + LS+ + L +QM AA L+FE+AA +RD + LK Sbjct: 624 TADTGEQADSTEFTTQDFAKLSRDAQTKMVAELTEQMQAAAKRLDFEQAATLRDTVMELK 683 Query: 795 S 795 + Sbjct: 684 A 684 >gi|322383005|ref|ZP_08056835.1| excinuclease ABC subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153028|gb|EFX45488.1| excinuclease ABC subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 664 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/654 (54%), Positives = 464/654 (70%), Gaps = 2/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AIA+L++G+ + Q LLG TG+GKTFT A+VI + RP +V+A Sbjct: 10 FELVSEYSPQGDQPKAIAELVEGVKQGKAHQTLLGATGTGKTFTAAQVIAQLNRPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP+NAV YFVSYYDYYQPEAY+P +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLAAQLASEFKEFFPNNAVSYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D IVV+SVSCIYG+GS + Y +++ L++G + ++L LV QY+R Sbjct: 130 SATSSLFERRDIIVVASVSCIYGLGSPKEYGSLLLSLRVGMEKSRNDILRRLVDIQYQRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +RGTFRV GD IEIFP+ + A RV +FG++IE I+E LTG+ + E I I+ Sbjct: 190 DMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEILGEREHIAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT A+K I+ EL+ RL EL +G+LLEAQRLEQR YD+EM+ G C Sbjct: 250 PASHFVTHEDKTKLAVKNIERELEGRLEELRGQGKLLEAQRLEQRTRYDMEMMLEMGFCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS LT R G P TL +Y P+D L+ +DESHVT+PQI MY GD RK L E+ Sbjct: 310 GIENYSGPLTFRERGSTPYTLLDYFPDDMLVMIDESHVTLPQIRAMYNGDQARKTVLVEH 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ I +SATPG +ELE C +VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEQKVKQAIYISATPGPYELEHCPE-MVEQIIRPTGLLDPIIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ E+ + R+L+T LTK+MAEDLT+YL E I+VRY+HS++KTLE Sbjct: 429 VRPTKGQIDDLLAEVQDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLG F VLVGINLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 489 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+Y D IT S+ AI ET RRR Q +NK+H I P +V +KI +VI+ + + Sbjct: 549 NSEGRVIMYGDKITDSMDKAIRETERRRAIQEAYNKEHGITPTTVAKKIRDVIEATKVAE 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T ++ + + +SK+ ++ L +M AA NL FE AA +RD + LK Sbjct: 609 QKTEYLA-EVKTAKMSKRDRMKLIERLEAEMKEAAKNLQFERAAELRDAVLELK 661 >gi|116670617|ref|YP_831550.1| excinuclease ABC subunit B [Arthrobacter sp. FB24] gi|189037971|sp|A0JWN0|UVRB_ARTS2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116610726|gb|ABK03450.1| Excinuclease ABC subunit B [Arthrobacter sp. FB24] Length = 693 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/671 (51%), Positives = 470/671 (70%), Gaps = 20/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE +QRP +VM Sbjct: 14 FEVISEFKPAGDQPAAIAELTERIKNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SS+NE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSVNEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV++VSCIYG+G+ E Y +V L+ G + + +LL V QY R Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDDLLRKFVSMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTG+ IR+ E + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIHTLHPLTGEVIRDEEEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV ++ A+K I++EL RL LE + +L+EAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGPERMSRAIKRIEDELAERLQVLESQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G P L +Y P+D LL +DESHVT+PQI MY GD RK L ++ Sbjct: 313 GIENYSSHIDGRARGTAPHCLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVDF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL + G V+QIIRPTGL+DP V Sbjct: 373 GFRLPSAMDNRPLKWDEFQERVGQTVYLSATPGKYELGKSDGF-VQQIIRPTGLIDPEVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI + R+L+T LTKRMAEDLT+YL ++V Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLGEIKTRTAKNERVLVTTLTKRMAEDLTDYLLGHGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AIDET RRR Q+ +N +H I+PQ +++KI ++ D + ED Sbjct: 552 NVSGQVHMYADRITDSMAHAIDETNRRRAIQVAYNTEHGIDPQPLRKKIADITDQLAKED 611 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-----------------LRKQMHLAADNLNFEEA 783 A T + + A + K KG + +++ L +QMH AA L FE A Sbjct: 612 ADTREL-LAASGKTRGKGKGASTVRADGLAAAPAEDLVGLIEQLTEQMHAAAGELQFELA 670 Query: 784 ARIRDEIKRLK 794 AR+RDE+ LK Sbjct: 671 ARLRDEVGELK 681 >gi|315924531|ref|ZP_07920750.1| excision endonuclease subunit UvrB [Pseudoramibacter alactolyticus ATCC 23263] gi|315622061|gb|EFV02023.1| excision endonuclease subunit UvrB [Pseudoramibacter alactolyticus ATCC 23263] Length = 662 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/656 (52%), Positives = 466/656 (71%), Gaps = 7/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQ AI ++ KGI K Q LLGVTGSGKT+TMAKVIEA+Q+P +++A Sbjct: 12 FEVVSDYEPKGDQGQAIEKIAKGIKKGLKYQTLLGVTGSGKTYTMAKVIEAVQKPTLIIA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAYVP D YIEK+SSIN++ID++RH Sbjct: 72 HNKTLAAQLANEFRSFFPNNAVEYFVSYYDYYQPEAYVPGRDIYIEKDSSINDEIDKLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +++ L+ G ++ +++ LV+ QY R Sbjct: 132 SATAALFERRDVIIIASVSCIYGLGSPIDYENLVLSLRPGMVKDRDDIIRKLVEIQYTRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG R FRV GD +EIFP+ D A R+ F ++I+ I+E +TG+ + I I+ Sbjct: 192 DIGFERNNFRVRGDVLEIFPAASTDKAVRIEFFDDEIDRITEINVITGEITGELSHISIF 251 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T L +A+K I+EEL R + RL+EAQR+ QR YDLEML+ G C Sbjct: 252 PASHYTTTPERLESAIKGIREELGERYAWFNEHNRLVEAQRILQRTNYDLEMLQEMGYCT 311 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R++ G + G PP TL +Y P+D L+ DESHV+IPQI GM GD RK L +Y Sbjct: 312 GIENYTRHINGISAGSPPYTLIDYFPDDFLMIADESHVSIPQIGGMSAGDRARKKNLVDY 371 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + +ATPG +E + + IVEQ+IRPTGL+DP + Sbjct: 372 GFRLPSAYDNRPLTFQEFEGKIHQMVFTTATPGPYEKKHSEQ-IVEQLIRPTGLLDPKIS 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI R+L+T LTK+MAEDLT+YL + +RVRY+HS++ T+E Sbjct: 431 VRPIKGQIDDLLGEIRETTSHRERVLITTLTKKMAEDLTDYLKDNGVRVRYLHSDIDTIE 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLGKFDVLVGINLLREGLD+PE GLVA+LDADKEG+LRS+TSL+QTIGRAAR Sbjct: 491 RMEILRDLRLGKFDVLVGINLLREGLDLPEVGLVAVLDADKEGYLRSETSLVQTIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD ITKS+ AI ET RRR Q +N+KH+I P++V + I +VI+ + Sbjct: 551 NADGRVIMYADNITKSMDRAITETNRRRRIQQAYNEKHHITPKTVVKDIHDVIE---VTK 607 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + DA+ + + + + LRKQM AA +L FE+AA +RD+I+RL+++ Sbjct: 608 VAEKPEAYDAK---VQPEPAEMDINELRKQMQEAAAHLEFEKAAALRDQIQRLEAA 660 >gi|294782396|ref|ZP_06747722.1| excinuclease ABC subunit B [Fusobacterium sp. 1_1_41FAA] gi|294481037|gb|EFG28812.1| excinuclease ABC subunit B [Fusobacterium sp. 1_1_41FAA] Length = 663 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/651 (53%), Positives = 471/651 (72%), Gaps = 4/651 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++ ++Y P GDQP AI ++K I K Q+LLGVTGSGKTFT+A VIE +QRPA++ Sbjct: 4 NLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPALI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++ Sbjct: 64 IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + +E+KEL+ L+ +Y+ Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIERKELMKKLIALRYE 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377 R DI RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQKI+ N+E I Sbjct: 184 RNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLERI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + Y+T + ++ IK++L++ + E E +LLEAQRL QR YDLEM+ G Sbjct: 243 VIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMITEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD RK L Sbjct: 303 YCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKEAL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E I EQ+IRPTG+VDP Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNNIAEQLIRPTGIVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + QV+D+ DEI + R+L+T LTK++AE+LTEY E ++V+YMHS++ Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERIEIIR LR G+ DV+VGINLLREGLDIPE LVAI++ADKEGFLRS+ SL+QTIGR Sbjct: 483 TLERIEIIRALRKGEIDVIVGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VILYAD +T S++ AI ET RRR+ Q E+N +NI+P+S+ ++I E D I Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DLIN 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 L+ + +++ SK + + L K++ L+FE+A +RD Sbjct: 601 LDYGIEDKKFENDKKVFRSKADIEKEIIKLEKKIKKLVGELDFEQAIVLRD 651 >gi|242372993|ref|ZP_04818567.1| excinuclease ABC subunit B [Staphylococcus epidermidis M23864:W1] gi|242349319|gb|EES40920.1| excinuclease ABC subunit B [Staphylococcus epidermidis M23864:W1] Length = 661 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 469/655 (71%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +++ G++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKLNSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++++ I E LTG+ IR E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ +DESHVT+PQI GMY GD RK L ++ Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + VSATPG +ELE +VEQIIRPTGL+DP V+ Sbjct: 367 GFRLPSALDNRPLKFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKVD 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+V Y+HSE+KTLE Sbjct: 426 VRPTENQIDDLLSEIQERVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD IT S+Q AIDET RRR+ Q HN+K+ I P+++ +KI +VI + D Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRRDIQTAHNEKYGITPRTINKKIHDVISATVESD 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++KK+ + ++++ K+M AA +L+FE+A +RD + LK+ Sbjct: 606 ETNEQKQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659 >gi|169629394|ref|YP_001703043.1| excinuclease ABC subunit B [Mycobacterium abscessus ATCC 19977] gi|169241361|emb|CAM62389.1| UvrABC system protein B (UvrB protein) excinuclease [Mycobacterium abscessus] Length = 719 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/690 (51%), Positives = 476/690 (68%), Gaps = 30/690 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L + + + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSQYEPAGDQPGAIAELERRVRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY VQL +G V + LL LV QY R Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLDVGLEVPRDALLRLLVDMQYNRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI PS+ E++A R+ FG+++E + +PLTG +R +++I+ Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQTNSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A++ I++EL+ RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMGKALEGIEQELEERLSELEGQGKLLEAQRLRMRTNYDIEMMRNVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G PP TL +Y P+D LL +DESHVT+PQI MY GD RK L ++ Sbjct: 327 GIENYSRHIDGRGAGTPPATLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE+ T+ +SATPG++E G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNYERSAAGGEFVEQVIRPTGLVDPKVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ I + R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 447 VKPTKGQIDDLIASIRQRTEADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADT+T S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 567 NVSGEVHMYADTMTDSMKEAIDETDRRRAKQIAYNQANGIDPQPLRKKIADILDQVYREA 626 Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773 T +++ + S+ + G+A +K + +QM Sbjct: 627 EDTEEVAVGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTKTMPRAELADLIKDMTEQMMT 686 Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 AA +L FE AAR RDEI LK +G+D Sbjct: 687 AARDLQFELAARFRDEIADLKKE--LRGMD 714 >gi|227432640|ref|ZP_03914616.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351610|gb|EEJ41860.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 669 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/659 (50%), Positives = 474/659 (71%), Gaps = 7/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI +L+ GI++ K Q+LLG TG+GKTFT++ VI+ +++P +V++ Sbjct: 10 FEIKSKYEPTGDQPQAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+ Sbjct: 70 HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDKLRN 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLERND IVV+SVS I+G+G Y ++ L++G E+ +L+ L+ Q+ R Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHQYKDHVISLRVGYEYERDQLMRDLIDVQFTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD IEIFP+ +++A R+ FG++I+ I E LTG+ I + + I+ Sbjct: 190 DIDFHRGTFRVRGDVIEIFPASQDEMALRIEFFGDEIDRIREINSLTGETIAERDHVAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T + A+ I++E+ ++ +KEG+LLEAQR++QR YDL MLE G Sbjct: 250 PAKHFMTDDDQMQVALDGIRQEMNTQVELFKKEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ +D L+ +DESHVT+PQI GM+ GD RK TL Y Sbjct: 310 GIENYSRWMDGRQAGEPPFTLIDFFLDDFLIVIDESHVTMPQIRGMFNGDKARKETLVNY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI-IVEQIIRPTGLVDPPV 559 GFRLPS +DNRPL+ E+ I +SATPG +E E+ +++QIIRPTGL+DP V Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYENERVDSKHVIQQIIRPTGLLDPEV 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ EI +++ R+ +T LTKRMAEDLT+YL + I+V Y+H+++KTL Sbjct: 430 EVRPVMGQIDDLVGEITKRSERDERVFITTLTKRMAEDLTDYLKDLGIKVAYLHADIKTL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLRLGK+DVL+GINLLREG+D+PE LVAILDADKEGFLR+ SLIQTIGRAA Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+YAD +T+S+ AIDET RRRE Q+++N +H I P+++K+ I ++I + Sbjct: 550 RNENGHVIMYADKMTRSMLEAIDETARRREIQMQYNTQHGITPKTIKKDIRDLIS---VT 606 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AAT +D +++ L K + ++ + ++ QM AA L+FEEAA++RD + LK+ Sbjct: 607 HAATEEKVVDLTKVAFNDLPKDEQQSIVDNMTSQMKAAAKALDFEEAAQLRDTVMELKT 665 >gi|158522387|ref|YP_001530257.1| excinuclease ABC subunit B [Desulfococcus oleovorans Hxd3] gi|158511213|gb|ABW68180.1| excinuclease ABC, B subunit [Desulfococcus oleovorans Hxd3] Length = 666 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/667 (51%), Positives = 453/667 (67%), Gaps = 10/667 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + T + P+GDQP AI +L I S + + +GVTGSGKTFTMA VI ++RPA+++A Sbjct: 2 YDLTTSFTPAGDQPRAIRRLCDQIRSGRRHNVFVGVTGSGKTFTMAHVIAELKRPALIIA 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+EF FP NAVEYFVSYYD+YQPEAY+P TDTYI+K+SSIN+ ID+MRH Sbjct: 62 PNKTLAAQLYNEFHALFPRNAVEYFVSYYDFYQPEAYLPVTDTYIQKDSSINDTIDKMRH 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+L R D IVV+SVSCI+G+GS E Y + V+L G +++ LL+ LV QY+R Sbjct: 122 SATRSVLSRPDVIVVASVSCIFGLGSPEDYRGLRVELAPGMELDRDRLLADLVAIQYERN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++IFP+ E+ A RV FG+++E + E PL G + IY Sbjct: 182 DYDFSRGVFRVRGDRVDIFPASEEEAALRVEFFGDEVEALFEIDPLKGSVRGKIPRAVIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVT + + + EELK+R+ G+L+EAQR+E+R +DLEM+ G C Sbjct: 242 PATHYVTRQQDRKAIVDRVNEELKVRIDHFRAAGKLIEAQRIEERTRFDLEMILEMGYCN 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTGR PG+PP TL +Y P+D LLF+DE H+T+PQ+ MY+GD RK+TL E+ Sbjct: 302 GIENYSRHLTGREPGQPPATLLDYFPDDFLLFLDECHITVPQLGAMYKGDHSRKSTLVEF 361 Query: 501 GFRLPSCMDNRPLRFEEW--NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 GFRLPS +DNRPL FEE+ R I VSATP ++E + + EQI+RPTGLVDP Sbjct: 362 GFRLPSALDNRPLTFEEFEEKTGRAAVIYVSATPAAYEYRKAGDAVAEQIVRPTGLVDPR 421 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+RSA QV+ ++DEI ++ R+L+T LTKRMAEDLT+Y E ++ RY+HSEVKT Sbjct: 422 IEVRSAENQVDHLFDEIRARVEKNERVLITTLTKRMAEDLTDYYAELGVKTRYLHSEVKT 481 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER+ +I +LR G DVL+GINLLREGLDIPE LVA+LDADKEGFLRS+ SLIQ GRA Sbjct: 482 LERMAVISELRRGDVDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQIFGRA 541 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN VILYAD IT ++ A+DET RRR+ Q +N H+I P++ I + + P Sbjct: 542 ARNVNGTVILYADRITDAMARAMDETNRRRKIQATYNTDHHITPRT----IFKEMSPDFG 597 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A +L++ L + L K+M AAD+ FE+AA IRD I L+ Sbjct: 598 AQGGDRAGPSAAVAETLARYGDTDDLDEIIRRLEKEMKAAADDYEFEKAADIRDRIAALR 657 Query: 795 SSPYFQG 801 F G Sbjct: 658 KLIVFDG 664 >gi|291458862|ref|ZP_06598252.1| excinuclease ABC subunit B [Oribacterium sp. oral taxon 078 str. F0262] gi|291418116|gb|EFE91835.1| excinuclease ABC subunit B [Oribacterium sp. oral taxon 078 str. F0262] Length = 660 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/661 (52%), Positives = 463/661 (70%), Gaps = 3/661 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ DY P+GDQP AI +L++G + Q LLGVTGSGKTFTMA VIE ++RP ++++ Sbjct: 3 FKLHADYAPTGDQPKAIEELVRGFQEGNQFQTLLGVTGSGKTFTMANVIERLKRPTLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP TDTYIEK+S INE+ID++R+ Sbjct: 63 HNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSTDTYIEKDSDINEEIDKLRN 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L ER D +VV+SVSCIYG+G+ Y M + L+ G S ++ E++ L++ QY R Sbjct: 123 SAMAALSERRDVVVVASVSCIYGLGAPTEYLNMALSLRPGQSKDRDEMIRHLIEIQYNRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +++FP+ + A+R+ FG++I+ I PL+G+ + + I+ Sbjct: 183 DMDFHRGTFRVMGDIVDVFPASEGEQAYRIEFFGDEIDRIRIIDPLSGKAKSELSHVMIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S YV P L+ A I +EL+ R+ + E +LLEAQR+ +R +D+EML TG C Sbjct: 243 PASPYVIPPEKLSLACDNILKELEERVNYFKSEDKLLEAQRISERTNFDVEMLRETGVCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+L PGEPP TL +Y PED L+ VDESH+++PQI GMY G+ RK TL +Y Sbjct: 303 GIENYTRHLNFSAPGEPPYTLMDYFPEDFLIIVDESHISLPQIRGMYNGNLSRKTTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATPG +E E + + EQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFGEFERKINQMLFVSATPGDYEAEH-ELLRAEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI ++ +IL+T LTKRMAEDLT+YL E I V+Y+HS++ TLE Sbjct: 422 VRPIRGQIDDLIGEIRRETEKKHKILVTTLTKRMAEDLTKYLKEAGILVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRD+RLGKFDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 482 RAAIIRDMRLGKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S++ + ET RRR+ Q+ +N++H I P ++K+ + E+I Sbjct: 542 NAEGHVIMYADQITDSMRRTMQETERRRKIQISYNEEHGITPTTIKKAVRELIAISKAVS 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 + + I DA+ S+S ++ + ++ L K+M AA LNFEEAA RD I+ L+ + Sbjct: 602 DSGSGIQKDAE--SMSARELEKLIRELTKRMRAAAAELNFEEAALCRDRIEELRKQKEGE 659 Query: 801 G 801 G Sbjct: 660 G 660 >gi|15807266|ref|NP_295996.1| excinuclease ABC subunit B [Deinococcus radiodurans R1] gi|6460084|gb|AAF11823.1|AE002060_2 excinuclease ABC, subunit B [Deinococcus radiodurans R1] Length = 730 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/660 (51%), Positives = 470/660 (71%), Gaps = 10/660 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 ++ ++++++ PSGDQP AIA L+ G+ S + Q LLG TG+GKT++MAKVIE +QRPA Sbjct: 57 EVVMLKVRSEFKPSGDQPTAIASLVDGLESGLRYQTLLGATGTGKTYSMAKVIEEVQRPA 116 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 ++MAPNKIL AQL SEF+ FFP AVE+F+SYYDYYQPEAYVP D +IEK++S+N++I+ Sbjct: 117 LIMAPNKILTAQLASEFREFFPDAAVEFFISYYDYYQPEAYVPGKDLFIEKDASVNQEIE 176 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 R+RHS TRSLL R D IVV+SVSCIYG+G + Y+ + +K G + + ELL LV Q Sbjct: 177 RLRHSTTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNAIVKKGGVMPRDELLGRLVNMQ 236 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R DI ++ G F V G+++ ++P++ E R+ ++G+D+E IS +PLTG+++ +++ Sbjct: 237 YERNDIELMPGRFSVKGETVTVWPAYDEQ-PLRIELWGDDVERISVVHPLTGERLGDLDA 295 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 +Y HYV+ + A+ I++EL RL G+LLEAQRL++R YDLEML+ Sbjct: 296 TVVYPAKHYVSSAGNIERAIGSIQQELDERLEYFHSVGKLLEAQRLKERTLYDLEMLKVL 355 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSR++ GR PG P T+ +Y P+D + F+DESHVT+PQI GM GD RK T Sbjct: 356 GYCSGIENYSRHIDGRAPGATPYTMLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQT 415 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L +YGFRLPS MDNRPL FEE+ T+ VSATPG +E Q + +QIIRPTGLVD Sbjct: 416 LVDYGFRLPSAMDNRPLNFEEFLSKTGQTVFVSATPGPFE-NQVSDSVADQIIRPTGLVD 474 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P V IR + Q+ED+ + G R L+T LTKRM+EDLTEYL E+ ++ RY+HS++ Sbjct: 475 PEVTIRPIQGQIEDLLGRVRERTAAGERTLVTTLTKRMSEDLTEYLLEKGVKARYLHSDI 534 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 ++ER IIRDLRLG +DVLVGINLLREGLD+PE LVAILDADK GFLRS +LIQTIG Sbjct: 535 DSVERQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSDRALIQTIG 594 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARNVN +VILYAD +T +++ A+DET RRREKQL +N++H I P++V + + +VI Sbjct: 595 RAARNVNGEVILYADVVTPAMRFAMDETARRREKQLAYNEEHGITPRTVIKGVRDVIRGE 654 Query: 737 LLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 LE + ++ N+S D L+ A L L M A++ ++FE+AA +RD+I+ +++ Sbjct: 655 ELEGEISSENVSGDRDSLT-------AQLTDLELDMWQASEAMDFEKAASLRDQIRAIEA 707 >gi|44455|emb|CAA31090.1| unnamed protein product [Micrococcus luteus] Length = 709 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/688 (51%), Positives = 473/688 (68%), Gaps = 36/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AIA+L + + + EK +L+G TG+GK+ T A ++E +QRP +VM Sbjct: 14 FEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G +++ LL V+ QY R Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTGQ +R E + I+ Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYIF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL+ RL ELE + +LLEAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P L +Y P+D LL VDESHVTIPQ MY GD RK TL E+ Sbjct: 313 GIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQYGAMYEGDMSRKRTLLEH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRP++++E+ T+ +SATPG++EL Q G VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPVKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ ++I + + R+L+T LTKRMAEDLT+YL E ++V Y+HS+V TL Sbjct: 432 VKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YA +T S++ AI+ET RRR Q+ +N++H I+PQ ++++I ++ D + ED Sbjct: 552 NVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARED 611 Query: 741 AATTNI---------------------SID-------------AQQLSLSKKKGKAHLKS 766 A T + S+D SL K ++ Sbjct: 612 ADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIEQ 671 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +QMH AA +L FE AAR+RDE+ LK Sbjct: 672 MSQQMHQAAADLQFELAARLRDEVGELK 699 >gi|58697071|ref|ZP_00372524.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58536653|gb|EAL59959.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 590 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/556 (59%), Positives = 419/556 (75%) Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 ++S ++ Q+LLGVTGSGKTFTMA VI RPA++MA NK LAAQLY E K FPHNAVE Sbjct: 3 LNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLFPHNAVE 62 Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 YF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+S SLLER D IVV+SVSCIYG Sbjct: 63 YFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRYSTVCSLLERRDTIVVASVSCIYG 122 Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343 +GS ESY MI+ L +G+ + + LS+L QYKR D RG FRV GD ++IF SH Sbjct: 123 LGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIVDIFLSHY 182 Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 E+ AWR+S+FG++IEEISE +TG + V I I+ NS+Y+TPR L A++ +K+EL Sbjct: 183 ENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIELVKKEL 242 Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463 RL + +++EA+RLEQR +D+EM+ TTG C+ IENYSRYL G G+PPPTLFE Sbjct: 243 HERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDPPPTLFE 302 Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523 Y+P+D +LFVDESHVT+PQ+ MY G+ RK L +YGFRLPS DNRPL+FEEW +RP Sbjct: 303 YLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEEWEGVRP 362 Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583 T+ +SATPG +EL + + +EQ+IRPTGL DP ++ +Q++DV E + +G Sbjct: 363 QTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQVTIGKGF 422 Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +L+T LTK+MAE+L EY+ E N++V Y+HS++ LERIEII LR + DVLVG+NLLR Sbjct: 423 CVLITTLTKKMAENLAEYMSELNMKVSYLHSDIAALERIEIIYKLRSKEIDVLVGVNLLR 482 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 EGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN +VILYAD IT S+ A+ E Sbjct: 483 EGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSLDRALRE 542 Query: 704 TTRRREKQLEHNKKHN 719 T RRR+KQ EHN HN Sbjct: 543 TERRRKKQEEHNILHN 558 >gi|297518079|ref|ZP_06936465.1| excinuclease ABC subunit B [Escherichia coli OP50] Length = 564 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/560 (60%), Positives = 423/560 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLA 700 NVN K ILY D IT S+ A Sbjct: 545 NVNGKAILYGDKITPSMAKA 564 >gi|325963172|ref|YP_004241078.1| excinuclease ABC subunit B [Arthrobacter phenanthrenivorans Sphe3] gi|323469259|gb|ADX72944.1| Excinuclease ABC subunit B [Arthrobacter phenanthrenivorans Sphe3] Length = 698 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/675 (51%), Positives = 470/675 (69%), Gaps = 23/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAIA+L + I++ EK +LLG TG+GK+ T A +IE +QRP +VM Sbjct: 14 FEVISEFKPAGDQPAAIAELTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D IVV++VSCIYG+G+ E Y +V L+ G + + LL V QY R Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGQEMNRDALLRKFVSMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG+++E I +P+TG+ IR + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELALRIEFFGDEVENIYTLHPVTGEVIREETEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I++EL RL LE + +L+EAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGPERMGRAIKSIEDELADRLAVLEGQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P L +Y P+D LL VDESHVTIPQI MY GD RK TL ++ Sbjct: 313 GIENYSRHIDGRAGGTAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL + G V+QIIRPTGL+DP V Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKADGF-VQQIIRPTGLIDPEVI 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTKRMAEDLT+YL I+V Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLGEIRTRVEKDERVLVTTLTKRMAEDLTDYLLGHGIKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGSFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AIDET RRR Q+ +NK+H ++PQ +++KI ++ D + ED Sbjct: 552 NVSGQVHMYADRITDSMANAIDETNRRRAIQVAYNKEHGVDPQPLRKKIADITDQLARED 611 Query: 741 AATTNI--------------------SIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLN 779 A T + + + L+ + + L + L +QMH AA L Sbjct: 612 ADTQELLNNNRLAKGGKRKAAAKGAAQVRSDGLAAAPAEDLVGLIEQLTEQMHGAAAELQ 671 Query: 780 FEEAARIRDEIKRLK 794 FE AARIRDE+ LK Sbjct: 672 FEVAARIRDEVSELK 686 >gi|86132353|ref|ZP_01050948.1| excinuclease ABC, B subunit [Dokdonia donghaensis MED134] gi|85817272|gb|EAQ38455.1| excinuclease ABC, B subunit [Dokdonia donghaensis MED134] Length = 666 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/655 (51%), Positives = 465/655 (70%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+D+ P+GDQP+AI QL+ GI+ E Q LLGVTGSGKTFT+A VI+ ++P +++A Sbjct: 3 FKLQSDFKPTGDQPSAIKQLVDGINKNETYQTLLGVTGSGKTFTVANVIQETEKPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEA++P + YIEK+ SINE+I++MR Sbjct: 63 HNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + I ++K + + L LV+ Y R Sbjct: 123 STTTSLLSGRRDVIVVASVSCLYGIGNPAEFEKNITEIKQDQVMARTMFLKKLVQGLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + RG FR+ GD++E+FP + D+A+RV FG++IEEI F P + + I ++I Sbjct: 183 TEGEFNRGNFRIKGDTVEVFPGY-ADMAFRVHFFGDEIEEIEAFDPASAEVIEKYSRLRI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + L A+ I E+L ++ E+ G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSQDVLQGAINQIGEDLTKQVSFFEEVGKHLEAKRLDERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L ++ P+D L+ VDESHVT+ Q+S MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEEW ++ I VSATP +EL++ +G VEQIIRPTGL+DP V Sbjct: 362 YGFRLPAAMDNRPLKFEEWEMMQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPIV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EIN ++ R+L+T LTKRMAE+LT+YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEINKVTERNERVLVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+E+++DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QTIGRAA Sbjct: 482 ERVELMQDLRKGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736 RNVN K I+YAD ITKS+Q ID++ RR+KQ+++N K+ + P ++K+ + + + Sbjct: 542 RNVNGKAIMYADKITKSMQETIDDSNYRRQKQIDYNNKNGLTPMAIKKSLDNALTRKETY 601 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +E N++ + + L+K + + ++S RK M AA L+F +AA++RD+IK Sbjct: 602 KIEAEELVNLAAEDAEEYLTKPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIK 656 >gi|258404926|ref|YP_003197668.1| excinuclease ABC subunit B [Desulfohalobium retbaense DSM 5692] gi|257797153|gb|ACV68090.1| excinuclease ABC, B subunit [Desulfohalobium retbaense DSM 5692] Length = 665 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/656 (51%), Positives = 454/656 (69%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ TD P GDQP AI +L + + Q+LLGVTGSGKTFT+A V+ + RP +VMA Sbjct: 5 FQLVTDMVPKGDQPKAIEKLCANLEAGVSDQVLLGVTGSGKTFTVANVVARLNRPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FP+NAVEYFVSYYDYYQPEAY+P +DTYIEK+SSINE ID++RH Sbjct: 65 PNKTLAAQLYSEFKELFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINEDIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D ++V+SVSCIYG+GS E Y +M+V + +G ++ +L+S LV+ QY+R Sbjct: 125 AATHALLTRRDVLIVASVSCIYGLGSPEYYEKMVVPVHVGQNLAMDQLMSRLVEIQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +E+ P++ + A R+ FG++I+ + E PLTG+ + E I+ Sbjct: 185 DYDFHRGTFRVRGDVLELIPAYRHERALRIEFFGDEIDALYETDPLTGEVLGPQEKALIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV+ + L A+ I++EL+ RL +E RL+EAQRLEQR DLEM+E G C Sbjct: 245 PGSHYVSDQENLKRAIDDIRDELRARLTWYREENRLVEAQRLEQRTQLDLEMIEELGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR P PP L +Y P D LLF+DESHV++PQI GM+ GD RK TL ++ Sbjct: 305 GIENYSRHLDGRAPESPPSCLLDYFPSDFLLFLDESHVSVPQIGGMFNGDRSRKQTLVDF 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+ T+ VSATPG+WE ++ G I+EQ+IRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLSFDEFLKRLNQTVYVSATPGNWERDRASGEIIEQVIRPTGLLDPQVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E + R+L+T LTKR+AEDLTE+L+ R + RYMHS++ TLE Sbjct: 425 VRPTGGQMDDLLAECRQRMDKDERVLITTLTKRLAEDLTEFLHSRGVPSRYMHSDIDTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+ LR G F LVGINLLREGLD+PE LVA+LDADKEGFLRS SLIQT GRAAR Sbjct: 485 RVEIIQSLRRGDFHALVGINLLREGLDLPEVSLVAVLDADKEGFLRSARSLIQTFGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N V+LYAD T +++ A+DE+ RRR Q N +H I P+S++++ + E Sbjct: 545 NRNGCVLLYADKKTPAMREAMDESHRRRSLQEAFNLEHGITPESIRKRSGHALAHAGKEQ 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + +K + + L ++M AA +L FE AA +RDE +RL+ + Sbjct: 605 SEMAKAAETTSSYGSDPQKLEKAIARLEREMRQAAKDLAFERAASLRDEAQRLRQT 660 >gi|183982451|ref|YP_001850742.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium marinum M] gi|183175777|gb|ACC40887.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium marinum M] Length = 726 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/693 (51%), Positives = 479/693 (69%), Gaps = 33/693 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 32 FEVISPHDPAGDQPAAINELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 92 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+L++G V + LL LV QY R Sbjct: 152 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGTDVPRDGLLRLLVDVQYTRN 211 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG +R V++++I+ Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRQVDSLRIF 270 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE G+LLEAQRL R YD+EM+ G C Sbjct: 271 PATHYVAGPERMAQAISTIEEELAERLAELEGHGKLLEAQRLRMRTNYDIEMMRQVGFCS 330 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L E+ Sbjct: 331 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEF 390 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 391 GFRLPSAVDNRPLQWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 450 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A+ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 451 VKPTKGQIDDLIGEIRQRAEADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 570 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 571 NVSGEVHMYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYREA 630 Query: 740 --DAATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQ 770 A ++ I + S+ + G+A +K L Q Sbjct: 631 DDTEAAESVPIGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTSQ 690 Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 M +AA +L FE AAR RDEI LK +G+D Sbjct: 691 MMVAARDLQFELAARFRDEIADLKKE--LRGMD 721 >gi|88809951|ref|ZP_01125456.1| excinuclease ABC subunit B [Synechococcus sp. WH 7805] gi|88786141|gb|EAR17303.1| excinuclease ABC subunit B [Synechococcus sp. WH 7805] Length = 678 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/669 (52%), Positives = 454/669 (67%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P GDQP AI QL+ ++ ++ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 FDLTAPYSPKGDQPTAIKQLVARVNDGQRYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ ED RV +FG+++E I P TG+ ++++ETI IY Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSLETINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L+TA++ I+ EL RL L EG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKDRLDTAVQAIRSELNERLDFLNAEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR PG P L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREPGSAPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ VSATPG+WELE + +Q+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKGEEFWTKARQTVFVSATPGNWELEVSGDEVAQQVIRPTGVLDPIVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E Sbjct: 423 VRPTNGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENDVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V K +LY D +T S+ AI ET RRR Q +N+KH I P + +K I L Sbjct: 543 HVEGKALLYGDNLTDSMAKAISETERRRSIQQAYNEKHGIVPTAAGKKASNSILSFLELS 602 Query: 741 AATTNISIDAQQLSLSKKKGKA-----------HLKSLRKQMHL----AADNLNFEEAAR 785 DA + ++ K +A L L Q+ L AA L+FEEAA Sbjct: 603 RKLKTDGPDADLVKVASKAVEALEDDADGMTLDALPELIDQLELKMKDAAKKLDFEEAAN 662 Query: 786 IRDEIKRLK 794 +RD IKRL+ Sbjct: 663 LRDRIKRLR 671 >gi|284044329|ref|YP_003394669.1| excinuclease ABC subunit B [Conexibacter woesei DSM 14684] gi|283948550|gb|ADB51294.1| excinuclease ABC, B subunit [Conexibacter woesei DSM 14684] Length = 678 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/659 (51%), Positives = 471/659 (71%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+ DQP+AIA L +GI +R++ LLG TG+GKT TMA IEA+QRPA+++A Sbjct: 4 FRLDSTYAPTADQPSAIASLAEGIEARDRYMTLLGATGTGKTMTMAATIEAVQRPALIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ +FP NAVEYFVSYYDYYQPEAYVP D YIEK+S+IN +I+R+RH Sbjct: 64 HNKTLAAQLCNEFRTYFPDNAVEYFVSYYDYYQPEAYVPSRDLYIEKDSAINSEIERLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SL R D IVV+SVSCIYG+GS E Y + ++ L+ G +V++ E+L LV QY R Sbjct: 124 AATASLFARKDVIVVASVSCIYGLGSPEKYDRNMLILRRGATVDRDEVLRKLVSIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D + RG FRV G+++E+FP++ E A+R ++FG+D+EE+ +F PLTG+ I ++E + Sbjct: 184 DTVLQRGNFRVRGETLEVFPAYAES-AYRATLFGDDVEEVQQFDPLTGELIDEDLEFAAV 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHY + + A+ I EL R +LE+EG+LLE+ RL QR YD+EML G C Sbjct: 243 WPASHYNVDQEEIADAVTEIGRELNERCAQLEREGKLLESHRLRQRTQYDMEMLREMGFC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR L GR G+ P L ++ PED + F+DESH T+PQI GM+ GD RK TL + Sbjct: 303 SGIENYSRILDGRRKGDRPFCLIDFFPEDFVCFIDESHQTVPQIGGMFEGDRSRKQTLID 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP RFEE+ + P + VSATPG +E IVEQI+RPTG++DP + Sbjct: 363 YGFRLPSALDNRPQRFEEFLSITPQVVFVSATPGEYERTHSPR-IVEQIVRPTGIIDPKI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R R Q++D+ +EI + ++ R L+T LTKRM+EDLT YL E +VRY+HSEV T+ Sbjct: 422 DVRETRNQIDDLMNEIKVRVERDERTLVTTLTKRMSEDLTGYLLEMGFKVRYLHSEVDTI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+IIR+LRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR TSLIQTIGRAA Sbjct: 482 ERIQIIRELRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRGATSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ V++YAD TK++++A++ET RRRE QL +N++H I P+S+ + I ++ + + E Sbjct: 542 RNVDGTVVMYADKETKAMRIALEETERRREIQLAYNREHGITPESIIKGISDIAEFLQAE 601 Query: 740 DAATTN----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +DA + + + + + + ++M AA+ L FE AA +RDEIK L+ Sbjct: 602 SKVPKGRRRRLKLDAGK-QRTPAELEKAIIEIEEEMLRAAEELRFEYAATLRDEIKTLR 659 >gi|163846641|ref|YP_001634685.1| excinuclease ABC subunit B [Chloroflexus aurantiacus J-10-fl] gi|222524438|ref|YP_002568909.1| excinuclease ABC subunit B [Chloroflexus sp. Y-400-fl] gi|163667930|gb|ABY34296.1| excinuclease ABC, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222448317|gb|ACM52583.1| excinuclease ABC, B subunit [Chloroflexus sp. Y-400-fl] Length = 664 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/664 (51%), Positives = 470/664 (70%), Gaps = 15/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AI QL+ G+ + + Q LLG TG+GKTF MA + MQRP +V+A Sbjct: 3 FRIEAPYQPTGDQPRAIEQLVAGLRAGYRHQTLLGATGTGKTFVMAHIFAQMQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L +QL++EF+ F P AVE F+SYYD Y PEAYVP D YIEKE+SINE+IDR+RH Sbjct: 63 HNKTLVSQLWAEFREFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D ++V+SVS I+G+GS Y Q V L++G+ + +L+ L+ Q++R+ Sbjct: 123 AATQALLSRRDVLIVASVSAIFGLGSPHDYGQEKVTLRVGEVRNRDKLMRQLIDLQFERK 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+++I P++ E A RV +G++IE I E PLTG+ + ++IY Sbjct: 183 DMDFQRGTFRVRGDTLDIIPANAE-TAIRVEFWGDEIERIVELDPLTGEVLCKHAVVEIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + L A+ I++EL R+ ELE G+LLEAQRL+QR YD+EML G C Sbjct: 242 PAKHFVTTKEKLQLAIASIQDELAERVRELEAAGKLLEAQRLKQRTLYDIEMLSEVGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PG+ P TL +Y P+D L+F+DESH+T+PQ+ GMY GD RK TL ++ Sbjct: 302 GIENYSRHLDGRAPGQTPWTLLDYFPDDFLIFIDESHITLPQLRGMYNGDRQRKQTLVDF 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +E E+ + I VEQIIRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPLRFEEFEQHVYQVIYVSATPGPYEREKSEQI-VEQIIRPTGLLDPEIE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI ++ R+L+T LTKRMAEDL +YL E +R Y+H+++ T+E Sbjct: 421 VRPTRGQIDDLLGEIRRRVERKQRVLVTTLTKRMAEDLADYLKEMGVRTMYLHADIDTIE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+TSLIQ IGRAAR Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 ++ KVI+YADTIT+S++ AI ET RRR+ Q+ HN ++NI PQ + + + ++ D I + Sbjct: 541 HIEGKVIMYADTITRSMEAAIRETQRRRDIQMAHNLRYNIKPQGIAKGVRDLTDRIRKMA 600 Query: 739 EDAA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 E+ TT +++D L + + +K L KQM AA L FE+AA +RD+I Sbjct: 601 EERGEYVATPTTAVAVD-----LPRDEVLKLIKDLEKQMKQAAKELAFEKAAALRDQIVE 655 Query: 793 LKSS 796 L+ + Sbjct: 656 LRKT 659 >gi|256851463|ref|ZP_05556852.1| excinuclease ABC, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260660884|ref|ZP_05861799.1| excinuclease ABC, B subunit [Lactobacillus jensenii 115-3-CHN] gi|282933463|ref|ZP_06338839.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1] gi|297206278|ref|ZP_06923673.1| excision endonuclease subunit UvrB [Lactobacillus jensenii JV-V16] gi|256616525|gb|EEU21713.1| excinuclease ABC, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260548606|gb|EEX24581.1| excinuclease ABC, B subunit [Lactobacillus jensenii 115-3-CHN] gi|281302394|gb|EFA94620.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1] gi|297149404|gb|EFH29702.1| excision endonuclease subunit UvrB [Lactobacillus jensenii JV-V16] Length = 681 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/659 (51%), Positives = 463/659 (70%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQ AI +L G + K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FDLVSKFKPAGDQEQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +L+ERND +VV+SVSCIYG+G + Y+ ++ L G E+ LL LV QY R Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPKEYAASVLSLHEGQEYERNVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ D A+RV FG++I+ I E LTG+ I + I ++ Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSDHAFRVEFFGDEIDRIVEVDSLTGEVIGERDQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD RK TL +Y Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL + +VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRTNK-VVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++ R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIQGQIDDLVGEINKRIERDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+ DLR G FDVL+GINLLREG+D+PE LVAILDADKEGFLRS LIQT+GRAAR Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N + VI+YAD IT S+++AIDET RRREKQ+ N++H I P+++ + I +VI P+ Sbjct: 549 NSDGMVIMYADKITDSMKIAIDETRRRREKQIAFNEEHGITPKTIVKPIRDVISITKPVK 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E + ++ + L+KK+ +A +K+L QM AA L+FE AA +RD I L++S Sbjct: 609 EEKEKESFADLNFDE--LTKKQKQAMIKNLTDQMQDAAKKLDFEAAANLRDAIMELQNS 665 >gi|226355146|ref|YP_002784886.1| excinuclease ABC subunit B [Deinococcus deserti VCD115] gi|226317136|gb|ACO45132.1| putative UvrABC system protein B (Excinuclease ABC, subunit B) [Deinococcus deserti VCD115] Length = 671 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/660 (51%), Positives = 463/660 (70%), Gaps = 16/660 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 ++++ + PSGDQP AI L+ G+ S + Q LLG TG+GKT+TMAKVIE RPA++M Sbjct: 1 MLKVKSAFTPSGDQPTAIRSLVDGLDSGLRFQTLLGATGTGKTYTMAKVIEETGRPALIM 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNKIL AQL SEF+ FFP AVE+F+SYYDYYQPEAYVP D +IEK++++N++I+R+R Sbjct: 61 APNKILTAQLASEFREFFPDAAVEFFISYYDYYQPEAYVPGKDLFIEKDAAVNQEIERLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HS TRSLL R D IVV+SVSCIYG+G + Y+ + + LK GD+V + E+L LV QY+R Sbjct: 121 HSTTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNLILKKGDAVSRDEILGRLVNMQYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI ++ G FR G+ IE++P++ E R+ ++G+D+E IS +PLTG ++ +++ + Sbjct: 181 NDIEMMPGRFRAKGEMIEVWPAYDEQ-PLRIELWGDDVERISVVHPLTGDRLADLDATVV 239 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y HYV+ + A+ I++EL RL + G+LLEAQRL++R YDLEML+ G C Sbjct: 240 YPAKHYVSSAGNIERAIGTIQQELDERLDYFKSVGKLLEAQRLKERTLYDLEMLKVLGYC 299 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PG P T+ +Y P+D + F+DESHVT+PQI GM GD RK TL + Sbjct: 300 SGIENYSRHIDGRAPGATPYTMLDYFPDDFVTFIDESHVTVPQIGGMANGDRARKQTLVD 359 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS MDNRPL F+E+ T+ VSATPG +E E + +QIIRPTGLVDPPV Sbjct: 360 YGFRLPSAMDNRPLNFQEFMDKTGQTVFVSATPGPFEREVSDA-VSDQIIRPTGLVDPPV 418 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R QVED+ I G R L+T LTKRM+EDLTEYL E+ ++ RYMHS++ ++ Sbjct: 419 TVRPINGQVEDLLGRIRERTAIGERTLVTTLTKRMSEDLTEYLLEKGVKARYMHSDIDSV 478 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER IIRDLRLG +DVLVGINLLREGLD+PE LVAILDADK GFLRS+ +L+QTIGRAA Sbjct: 479 ERQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSERALVQTIGRAA 538 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735 RNVN +VILY DTIT ++Q A++ET RRREKQ +N+ H I P +V + + +VI P Sbjct: 539 RNVNGEVILYGDTITPAMQFAMEETARRREKQTSYNEAHGITPTTVIKGVRDVIRGEEQP 598 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 E+ ++ + D L+ A L L M A+++L+FE AA +RD+I+ +++ Sbjct: 599 ---EEISSATLGNDRDSLT-------AQLTDLELDMWQASEDLDFERAASLRDQIRAIEA 648 >gi|319957776|ref|YP_004169039.1| excinuclease ABC subunit b [Nitratifractor salsuginis DSM 16511] gi|319420180|gb|ADV47290.1| Excinuclease ABC subunit B [Nitratifractor salsuginis DSM 16511] Length = 657 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/660 (51%), Positives = 470/660 (71%), Gaps = 14/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q Y P+GDQP AI +L I + + Q LLGVTGSGKT TMA++IE QRP ++M Sbjct: 4 FKVQAPYQPAGDQPEAIEKLAASIEAGNRYQTLLGVTGSGKTHTMARIIEKTQRPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR D +IEK+SS+N +++R+R Sbjct: 64 HNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNAELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IV++SVS YG+GS E Y ++ ++ +G+ Q+ELL V+ YKR Sbjct: 124 SATASLLSHDDVIVIASVSANYGLGSPEEYRSIVQKIVVGEEYNQRELLLKFVEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G++I+I+P++ E++A+R+ FG+++E I F LTG+K+ ++ +Y Sbjct: 184 DDFFDRGDFRVSGEAIDIYPAYSEELAYRIEFFGDEVEAIIGFDALTGEKVHELKEFTLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + ++ R + A+K I+EEL RL E+EGR++E RL+QR +DLEMLETTG C+ Sbjct: 244 SANQFIVGREKMVRAIKSIEEELGERLKFYEREGRMVEYNRLKQRTEFDLEMLETTGVCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+LTG+ PGE P +L FE + D L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYSRHLTGKKPGETPYSLLDYFEAMHRDYLVMVDESHVSLPQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+FEE+ P + VSATPG WE E +I EQ++RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFEEYIDKAPAYLFVSATPGEWETEHS-AVIAEQVVRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+ + QV ++D I +G R+L+TVLTK+MAE+LT Y + +RV+YMHS++ Sbjct: 423 EIEVIDSENQVAHLHDRIKEVTTRGERVLVTVLTKKMAEELTTYYNDLGLRVKYMHSDLD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR LRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+T+LIQT GR Sbjct: 483 AIERNQIIRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETALIQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVID 734 AARNV+ KV++YA IT S+Q I+ T RR+KQ+E+N+KH I P++ ++ ++V + Sbjct: 543 AARNVHGKVLMYAKRITPSMQACIETTRARRQKQIEYNQKHGITPKTTVRELDTDLKVAE 602 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P L + ++ + K + + +K L+ +M AA L+FEEAAR+RDEI ++K Sbjct: 603 PGELYNR-------HSKTDKMPKAERQRIVKELKAKMLSAAKKLDFEEAARLRDEIAKIK 655 >gi|158338625|ref|YP_001519802.1| excinuclease ABC subunit B [Acaryochloris marina MBIC11017] gi|189037950|sp|B0CE09|UVRB_ACAM1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|158308866|gb|ABW30483.1| excinuclease ABC, B subunit [Acaryochloris marina MBIC11017] Length = 668 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/668 (53%), Positives = 453/668 (67%), Gaps = 18/668 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F + + P GDQP AI +L + S Q LLG TG+GKTFTMAKVIE + +P + Sbjct: 1 MTAFDLHAPFVPKGDQPQAIEKLTTHLQSGHSRQTLLGATGTGKTFTMAKVIEEIGKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 ++A NK LAAQL +E ++FFP+NAVEYF+SYYDYYQPEAY+P TDT+IEK +SINE+ID Sbjct: 61 ILAHNKTLAAQLCNEIRSFFPNNAVEYFISYYDYYQPEAYIPVTDTFIEKTASINEEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + LK+G V+Q++LL +L QY Sbjct: 121 LRHSATRSLFERQDVIVVASISCIYGLGIPAEYLKASIPLKVGAEVDQRQLLRNLAAVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ ++++E + Sbjct: 181 TRNDVDLGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYVDPVTGETLQSLEGL 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y H+VTP L A++ I E ++ LE G+LLEAQRL QR YDLEML G Sbjct: 240 NVYPARHFVTPTERLEMAVEAIDAERTAQVEHLEGAGKLLEAQRLNQRTRYDLEMLREVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR GEPP L +Y P+D LL VDESHVT+PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQARKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS DNRPL+ EE+ + VSATPG WE+E + +VEQ+IRPTG+VDP Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVGQCVFVSATPGLWEIELSENRVVEQVIRPTGVVDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R QV+D+ EI + R L+T LTKRMAEDLTEY ER +RVRY+HSE+ Sbjct: 420 EIFVRPTTGQVDDLLAEIQERVGRQERTLITTLTKRMAEDLTEYFEERGVRVRYLHSEIN 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ++RIEI+RDLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGR Sbjct: 480 AIQRIEILRDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR+V + ILYAD +T S++ AI ET RRR+ QL +NKKH I PQ VK+ I L Sbjct: 540 AARHVRGQAILYADNLTDSMEKAISETERRRKIQLAYNKKHGITPQPVKKGSDNAILAFL 599 Query: 738 ----------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 LEDA Q L + + L QM AA NL FEEAA+ R Sbjct: 600 EVSRRLNTQELEDAYE-------QADDLPLESVPELITQLEAQMKEAAKNLEFEEAAKYR 652 Query: 788 DEIKRLKS 795 D IK L+S Sbjct: 653 DRIKNLRS 660 >gi|319789529|ref|YP_004151162.1| excinuclease ABC, B subunit [Thermovibrio ammonificans HB-1] gi|317114031|gb|ADU96521.1| excinuclease ABC, B subunit [Thermovibrio ammonificans HB-1] Length = 663 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/658 (52%), Positives = 471/658 (71%), Gaps = 9/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQP AI L +G+ K Q LLG+TGSGKT+T+AKVIE +Q+P +V++ Sbjct: 5 FKVVSPFKPRGDQPKAIKALSEGVKEGLKYQTLLGITGSGKTYTIAKVIEEVQKPTLVIS 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK+LAAQLY E KNFFP NAVEYF+SYYDYYQPEAY+P D YIEK+ SIN I+RMRH Sbjct: 65 HNKVLAAQLYHELKNFFPENAVEYFISYYDYYQPEAYIPSRDLYIEKDCSINPVIERMRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+GS E Y ++ ++ ++G+ VE++E++ LV Y+R Sbjct: 125 SATVSLLTRPDTIVVASVSCIYGLGSPEHYKKLALRFEVGEIVEREEVIRKLVSLGYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + G F+V GD I+I+P+ E+ RV +FG++++ I+ + ++ + T +Y Sbjct: 185 DFEVRPGIFKVRGDVIDIYPADTEEHFIRVELFGDEVDSITMLTYFNHETVKELNTYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY TP + A++ I+EEL+ RL +G+ LEA+RLEQR YD+E+L G C+ Sbjct: 245 PASHYATPHSRIVRAVRSIEEELQERLQYFLSQGKELEARRLEQRTRYDMELLLEIGHCK 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P+D L+ VDESHVTIPQI MYRGD RK L E+ Sbjct: 305 GIENYSRHLEGRKPGEPPFTLLDYFPDDFLVIVDESHVTIPQIKAMYRGDRARKFNLVEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ P I VSATPG +ELE + +VEQIIRPTGL+DP VE Sbjct: 365 GFRLPSAYDNRPLTFEEFLKRVPQAIFVSATPGPFELEVSER-VVEQIIRPTGLLDPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++ + +I ++ R+L+T LTK+ AE+LT YL E+ ++ +Y+HSE+ ++E Sbjct: 424 VRPTQGQIDYLLSQIRERVKRNERVLITTLTKKSAEELTNYLLEKGVKAKYLHSEIDSVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR LR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS TSLIQT+GRAAR Sbjct: 484 RVEIIRGLRQGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KVIL+AD +T S++ AI+ET RRR+ Q +N++HNI PQ+VK + ++P +LED Sbjct: 544 NVNGKVILFADRVTPSMKRAIEETQRRRKIQEAYNREHNITPQTVKRE----LEPSILED 599 Query: 741 AATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A + + +++ ++++ ++ L K+M AA N FE AA +RD+I+ L+ Sbjct: 600 AGLSALERIKRKGIEEVPKNEEELFELIEKLEKEMKEAAKNWEFERAAELRDKIRELR 657 >gi|294790750|ref|ZP_06755908.1| excinuclease ABC subunit B [Scardovia inopinata F0304] gi|294458647|gb|EFG27000.1| excinuclease ABC subunit B [Scardovia inopinata F0304] Length = 711 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/685 (52%), Positives = 473/685 (69%), Gaps = 35/685 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L + ++S E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 22 FVVKSPYKPSGDQPQAIEELAERLNSGESDVVLMGATGTGKTATTAWLIEKLQRPTLILE 81 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAYVP+TDT+IEK+SSIN+ ++R+RH Sbjct: 82 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYVPQTDTFIEKDSSINDDVERLRH 141 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R D +VVS+VSCIYG+G+ E Y+ ++ L GD + + +LL + VK QYKR Sbjct: 142 AATANLLTRRDTVVVSTVSCIYGLGTPEEYASQMLFLHEGDEINRDDLLRTFVKMQYKRN 201 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I +V +I I+ Sbjct: 202 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDSISTLHPLTGDLIDHVTSIHIF 260 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV LN A+K IKEE+ R+ E +K+ +LLEAQRLE R TYDLEML G+C Sbjct: 261 PATHYVAGPDRLNRALKTIKEEMDQRVAEFKKQNKLLEAQRLEMRTTYDLEMLSQIGTCP 320 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESH T+PQI MY GD RK TL EY Sbjct: 321 GVENYSRHFDGRQPGSPPHTLLDFFPDDFLLVIDESHQTVPQIGAMYEGDASRKRTLVEY 380 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL G +VEQIIRPTGLVDP VE Sbjct: 381 GFRLPSAMDNRPLKWDEFEQHIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPRVE 439 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+MAEDLT+YL +R I+V Y+HS+V TL Sbjct: 440 VRPVEGQIDDLLGEIKDRVAKNERVLVTTLTKKMAEDLTDYLLDREIKVEYLHSDVDTLR 499 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 500 RVELLRQLREGTIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 559 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T+++ AI ET RRRE Q+ +N KH+++PQ + +KI +V D + ED Sbjct: 560 NVSGTVIMYADKETEAMSQAITETNRRREVQIAYNTKHHVDPQPLIKKISDVNDMLAKED 619 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769 T + +D + S K G +HL + L Sbjct: 620 VDTQTL-LDTGYRN-SGKAGNSHLGVPKLDRDKAFKNRKQLIDAGLPAQDLADLIRQLSD 677 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QMH AA+ L FE AAR+RDEI+ LK Sbjct: 678 QMHTAAEQLQFELAARLRDEIRDLK 702 >gi|332882227|ref|ZP_08449857.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679850|gb|EGJ52817.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 666 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/659 (51%), Positives = 468/659 (71%), Gaps = 7/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P GDQP AI QL++GI +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A Sbjct: 3 FSIVSDFAPMGDQPQAIQQLVEGIEKDDKYQVLLGVTGSGKTFTIANVVEKIQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTTGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D +VV+SVSC+YGIG+ + + ++ +K GD + + +L+ LV+ Y R Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITIKRGDILPRTKLMHRLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FR+ GD +++FP + +D A+R+ FG++IEEI +F P T + + E++ I Sbjct: 183 TTADFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHILDHYESLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ E G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLMKQVEFFEASGKALEAKRLKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR G P L +Y P+D L+ +DESHVT+PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREAGTRPFCLIDYFPDDFLMVIDESHVTMPQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++ QG+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKAQGVYVEQVIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EI + ++ RIL+T LTKRMAE+LT+YL +R RY+HS+V TL Sbjct: 422 EVRPSQNQIDDLVEEIQVRVEKDERILVTTLTKRMAEELTKYLTRIGVRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPIL 737 RNVN K I+YAD IT S+Q ID+T RREKQ+ +NK H I PQ +++KI + PI Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHGITPQPLQKKIENSLSKSPIT 601 Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + + + +AQ + ++ K+ + +K RK M AA +L+F +AA+ RDEI RL Sbjct: 602 EFHYDPSFAHRQAAEAQAVYMTAKEIEKKIKETRKLMEAAAKDLDFLKAAQYRDEIARL 660 >gi|148272932|ref|YP_001222493.1| excinuclease ABC subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|189037957|sp|A5CRU3|UVRB_CLAM3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|147830862|emb|CAN01806.1| putative excinuclease ABC subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 688 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/675 (49%), Positives = 476/675 (70%), Gaps = 18/675 (2%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 ++ + F++ +DY PSGDQP AIA+L +++ E +LLG TG+GK+ T A +IE +QR Sbjct: 4 TRSVRPFKVVSDYSPSGDQPTAIAELAGRVNAGEPDVVLLGATGTGKSATAAWLIEKVQR 63 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +++A NK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+N + Sbjct: 64 PTLILAHNKTLAAQLATEFRELMPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNAE 123 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 ++R+RHS T SLL R D +VVS+VSCIYG+G E Y +V L++G +++ L+ V Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGQPEQYMNAMVALQVGMQIDRDTLIRKFVS 183 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY+R D+ RG FRV GD+IEI P + E++A R+ MFG++IE + + +PLTG +R + Sbjct: 184 MQYQRNDVDFSRGNFRVRGDTIEIIPMY-EELAIRIEMFGDEIEALYQLHPLTGDVVRKM 242 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 +++ ++ SHYV + A+ I++EL+ RL LE+EG+LLEAQRL R +D+EM++ Sbjct: 243 DSVSVFPGSHYVAETEVMRRAIGTIQQELEERLTVLEREGKLLEAQRLRMRTNFDIEMMQ 302 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSR++ GR+ GE P L +Y P+D L+ +DESHVT+PQI M+ GD RK Sbjct: 303 QIGFCSGIENYSRHIDGRDAGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMFEGDSSRK 362 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL E+GFRLPS +DNRPL++ E+ P T+ +SATPG +EL G +VEQIIRPTGL Sbjct: 363 RTLVEHGFRLPSALDNRPLKWNEFTERVPQTVYMSATPGKYELGMGDG-VVEQIIRPTGL 421 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP + ++ + Q++D+ ++I + ++ RIL+T LTK+MAE+LT+Y E +RVRY+HS Sbjct: 422 IDPAIVVKPTKGQIDDLLEQIRIRVEKDERILVTTLTKKMAEELTDYFAEAGVRVRYLHS 481 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 +V TL R+E++ +LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQT Sbjct: 482 DVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 541 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARNV+ +V +YAD +T S++ AI+ET RRREKQ+ +N +H I+P ++++I ++ + Sbjct: 542 IGRAARNVSGEVHMYADVLTDSMKRAIEETDRRREKQVAYNTEHGIDPTPLRKRIADITE 601 Query: 735 PILLEDAATTNISIDAQQLSLS------KKKGKAH---------LKSLRKQMHLAADNLN 779 IL + T ++ + +++GKA + L QM AA L Sbjct: 602 -ILAREGEDTKKMLEGRGGGKRSPTPNLRREGKAAAGANELETIISDLNDQMLQAAGELK 660 Query: 780 FEEAARIRDEIKRLK 794 FE AAR+RDE+ LK Sbjct: 661 FELAARLRDELGDLK 675 >gi|312890280|ref|ZP_07749818.1| excinuclease ABC, B subunit [Mucilaginibacter paludis DSM 18603] gi|311297244|gb|EFQ74375.1| excinuclease ABC, B subunit [Mucilaginibacter paludis DSM 18603] Length = 675 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/667 (51%), Positives = 474/667 (71%), Gaps = 15/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL++GI++ + Q LLGVTGSGKTFT+A +IE Q+P ++++ Sbjct: 3 FKITSQYKPTGDQPEAIRQLVQGINNGDNYQTLLGVTGSGKTFTVANIIEQTQKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++P ++TYIEK+ INE+I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIPSSNTYIEKDLQINEEIEKLRI 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T SL+ R D IVVSS+SCIYG+G+ E ++ + + +G V + L LV+ Y R Sbjct: 123 RTTSSLMSGRRDIIVVSSISCIYGMGNPEDFANSVFKFAVGTRVSRNAFLHRLVEILYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RG FRV GD ++I+P+++ D A+RVS FG+DIEE+S F P TG+ I ++ + + Sbjct: 183 TTADFRRGNFRVKGDIVDIWPANM-DYAYRVSFFGDDIEELSTFDPTTGKTIEKMQNMVV 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + YV PR ++ I+EEL+ R + +GR LEA+RLE+R+ YDLEM+ G C Sbjct: 242 YPANLYVAPRERFQQSVWEIQEELETRKKQFIDDGRFLEAKRLEERVNYDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PG P L +Y P+D L+ +DESHVT+PQI MY GD RK +L E Sbjct: 302 SGIENYSRFFDGRKPGARPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKISLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL F+E+ L P T+ VSATPG +ELE+ G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLNFQEFERLAPQTVYVSATPGDFELEKSGGVVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ DE++ + G RIL+T LTKRMAE+L +Y+ + I+ RY+HSEVKTL Sbjct: 422 EVRPVINQVDDLLDEVDKTIKLGDRILVTTLTKRMAEELAKYMDKLGIKCRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+R LRLG+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 482 QRVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733 RN +VI+YAD IT S+++ +DET RRR+ Q+ +N +H I P +V +E I+E V+ Sbjct: 542 RNDRGRVIMYADKITDSMRITMDETNRRRDIQIAYNLEHGITPITVGKSREAIIEQTSVV 601 Query: 734 D------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D +E+ A T ++ D +SK + K +++ +K+M AA ++F AA++R Sbjct: 602 DFKGGVQYAYVENTAAT-LAADPIVQYMSKPELKKSIENTKKEMLAAAKGMDFLLAAKLR 660 Query: 788 DEIKRLK 794 DE+ L+ Sbjct: 661 DEMFALE 667 >gi|17228627|ref|NP_485175.1| excinuclease ABC subunit B [Nostoc sp. PCC 7120] gi|20532282|sp|Q8YXS9|UVRB_ANASP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|17130478|dbj|BAB73089.1| excinuclease ABC subunit B [Nostoc sp. PCC 7120] Length = 665 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/664 (52%), Positives = 458/664 (68%), Gaps = 12/664 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F +Q + P+GDQP+AIAQL+ I + Q LLG TG+GKTF++A VIE + RP + Sbjct: 1 MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID Sbjct: 61 VLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + L+IG V Q+E+L L QY Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ I +++ + Sbjct: 181 SRNDVEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A + I ELK R ELE+ G+L+EAQR++QR YDLEML G Sbjct: 240 NIYPARHFVTPEERLEVACEDIAYELKQRKAELEETGKLVEAQRIDQRTRYDLEMLREVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR GEPP +L +Y P+D LL +DESHVT+PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS DNRPL+ EE+ I VSATPG+WELE + IVEQ+IRPTG++DP Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R Q++D+ EI R+L+T LTKRMAEDLTEYL E ++VRY+HSE+ Sbjct: 420 EISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEIN 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +++RIEI++DLR G FDVLVG+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGR Sbjct: 480 SIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IM 730 AAR++ + ILYAD +T S+ AI+ET RRR Q+ +NK H I PQ + +K + Sbjct: 540 AARHIRGQAILYADNMTDSMIKAIEETDRRRGIQVAYNKLHGITPQPIVKKSSNAILSFL 599 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 EV + D ID L ++ + L QM A+ L FEEAA++RD I Sbjct: 600 EVSRRLNATDLKVVEEHID----ELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRI 655 Query: 791 KRLK 794 K+L+ Sbjct: 656 KQLR 659 >gi|225412398|ref|ZP_03761587.1| hypothetical protein CLOSTASPAR_05621 [Clostridium asparagiforme DSM 15981] gi|225042079|gb|EEG52325.1| hypothetical protein CLOSTASPAR_05621 [Clostridium asparagiforme DSM 15981] Length = 660 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/655 (52%), Positives = 467/655 (71%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L+KG + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEYQPTGDQPQAIEALVKGFREGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+V+SVSCIYG+GS Y M++ L+ G ++ E++ L+ QY+R Sbjct: 123 SATAALSERSDVIIVASVSCIYGLGSPIDYKSMVISLRPGMEKDRDEVIHKLIDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EI+P++ + A+RV FG+++E I+ LT + + + I+ Sbjct: 183 EMDFKRGTFRVRGDVLEIYPAYSDGEAYRVEFFGDEVERIASIDTLTMEVKAQLGHVAIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A + I E+K R+ + E +LLEAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVVPKEKMMEATENILAEMKERVAFFKSEDKLLEAQRIAERTNFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD RK+TL E+ Sbjct: 303 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKSTLVEF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E + + + VEQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQMMFVSATPNVYERDH-ELLRVEQIIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++L+T LTKRMAEDLT+Y+ + IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLVSEVNREVAGRHKVLITTLTKRMAEDLTDYMRDVGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+R+ FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 482 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++AI+ET RRR+ Q E+N+ H I P ++K+ + D I + Sbjct: 542 NSEGHVIMYADKITDSMRVAIEETNRRRKIQQEYNEVHGITPTTIKKAVR---DLIAISK 598 Query: 741 AAT-TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A T ++ S+ +K+ K K L K+M AA LNFE+AA++RD + +K Sbjct: 599 AVTDSDDRFKKDPESMDEKELKKLAKELEKKMRQAAVELNFEQAAKLRDRMLEVK 653 >gi|319440333|ref|ZP_07989489.1| excinuclease ABC subunit B [Corynebacterium variabile DSM 44702] Length = 721 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/684 (51%), Positives = 475/684 (69%), Gaps = 31/684 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAI +L + ++ E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 28 FEVISEYEPAGDQPAAIKELDERLNRGERDIVLMGATGTGKSATAAWLIEKQQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V LK+G+ VE+ L LV QY R Sbjct: 148 SATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVGEEVERDRFLRLLVDIQYDRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD++++ P++ E++A RV FG++I+ + +PLTG IR VE I+I+ Sbjct: 208 DVSFTRGAFRVKGDTVDVIPAY-EELAVRVEFFGDEIDSLFYIHPLTGDVIREVEEIRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + AM I++EL+ R+ +LE G+LLEAQRL R YDLEM++ G C Sbjct: 267 PATHYVAGPERMEKAMADIRDELEHRVADLENRGKLLEAQRLRMRTEYDLEMIQQVGYCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R G P TL +Y P+D L +DESHVT+PQI GM+ GD RK L ++ Sbjct: 327 GIENYSRHIDQRESGSAPATLIDYFPDDYLTIIDESHVTVPQIGGMFEGDMSRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +EE++ + + +SATPG++E+ G VEQ+IRPTGLVDP VE Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGNYEIAAAGGEFVEQVIRPTGLVDPKVE 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ ++I ++ R+L+T LTKRMAEDLT+YL E ++VRYMHS++ TL+ Sbjct: 447 VRPTDGQIDDLIEQIRQRVEKKERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 NV+ +VI+YAD IT S+Q AIDET RRR KQ+ +N +H I+PQ +++KI +++D + Sbjct: 567 NVSGEVIMYADKITDSMQYAIDETERRRAKQIAYNTEHGIDPQPLRKKIADILDQVYENR 626 Query: 738 ----LEDAAT------------TNISIDAQQLSLSKKKGKAH-----------LKSLRKQ 770 +D AT ++ I A +S G+ + L Q Sbjct: 627 GEDGPDDGATRMDGAAGSTGFGADVDIAAGPRGVSAVSGRDAGNLARPELEKLIADLTSQ 686 Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794 M AA L FE A R+RDEI LK Sbjct: 687 MQDAARALKFELAGRLRDEIADLK 710 >gi|182439351|ref|YP_001827070.1| excinuclease ABC subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780007|ref|ZP_08239272.1| UvrABC system protein B [Streptomyces cf. griseus XylebKG-1] gi|178467867|dbj|BAG22387.1| putative excinuclease ABC subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660340|gb|EGE45186.1| UvrABC system protein B [Streptomyces cf. griseus XylebKG-1] Length = 709 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/692 (51%), Positives = 478/692 (69%), Gaps = 46/692 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 14 FEVVSPYQPSGDQPAAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH Sbjct: 74 PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VV+SVSCIYG+G+ + Y +VQLK+G+ +++ +LL V+ QY R Sbjct: 134 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ I T+ ++ Sbjct: 194 DLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIENLSTLHPLTGEIISEDPTVHVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL+ RL ELEK+G++LEAQRL R TYD+EML G+C Sbjct: 253 PASHYVAGPERMEKAVGGIERELEERLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCS 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS + R PG P TL +Y P+D LL +DESHVT+PQI MY GD RK TL ++ Sbjct: 313 GVENYSMHFDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ T+ +SATPG +EL + G VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLKWEEFLKRIDQTVYLSATPGKYELSRGDG-FVEQIIRPTGLVDPEVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI ++ R+L+T LTK+M+EDLT+Y E I+VRY+HS+V TL Sbjct: 432 VKPTEGQIDDLVHEIRERVERDERVLVTTLTKKMSEDLTDYFLELGIQVRYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADK+GFLRS TSLIQTIGRAAR Sbjct: 492 RIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT ++ AIDET RRREKQ+ +N + I+PQ +++KI +++ I E+ Sbjct: 552 NVSGQVHMYADKITPAMAQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREE 611 Query: 741 AATTNISIDAQQLSLSKKKGK--------------------------------------A 762 T Q L ++GK Sbjct: 612 VDT------EQLLGTGYRQGKETKAPVPALGSKAAKGGAKGKAAKPGAVVGDRPATELAG 665 Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + ++M AA +L FE AAR+RDE+ LK Sbjct: 666 IIEEMTERMRAAAADLQFEVAARLRDEVGELK 697 >gi|313885111|ref|ZP_07818863.1| excinuclease ABC, B subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619802|gb|EFR31239.1| excinuclease ABC, B subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 664 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/665 (52%), Positives = 461/665 (69%), Gaps = 14/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ Y SGDQP AIA L+KG+ ++ Q+LLG TG+GKTFT+A VI+ + +P +V+A Sbjct: 4 FNLKAPYQASGDQPKAIADLVKGLKEGKRDQILLGATGTGKTFTIANVIQEINKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE FFP NAVEYFVSYYDYYQPEAYVP +D+YIEKE+SIN++ID++RH Sbjct: 64 HNKTLAGQLYSELLEFFPDNAVEYFVSYYDYYQPEAYVPSSDSYIEKEASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA+ +LLER D IVV+SVSCIYG+ E Y ++ L+ G + + +L+ LV+ QY R Sbjct: 124 SASSALLERRDVIVVASVSCIYGLVDPEMYRDQVLSLREGQEISRAYVLNRLVEMQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EIF + + RV FG++I+ I E +TG+ ++ +Y Sbjct: 184 DYDFQRGTFRVRGDVVEIFIASHDSSVLRVEWFGDEIDRIREVDVMTGEIKSELKHFPVY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V + A++ I+ EL+ RL EL KE +LLEAQRLEQR YD+EML G C Sbjct: 244 PATHFVANQEQTLRAVETIRAELEERLAELNKEHKLLEAQRLEQRTNYDIEMLLEMGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG+ P TL ++ P+D L+ DESH+T+PQI GMY GD RK L +Y Sbjct: 304 GIENYSRHMDGRAPGQAPFTLLDFFPDDYLIVADESHITLPQIRGMYNGDRARKQQLIDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ I VSATPG +EL VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLRLEEFEKKVNQMIYVSATPGPYELNLTDNQYVEQIIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN +G R+ +T LTK+M+EDLT+YL E + +V+Y+HS++KTLE Sbjct: 424 VRPIKGQMDDIVSEINETISRGDRVFITTLTKKMSEDLTDYLKELDFKVKYLHSDIKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREGLD+PE LV ILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 484 RTEIIRDLRLGIFDVLVGINLLREGLDVPEVSLVMILDADKEGFLRSERSLVQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + KVI+YAD IT S++ A+DET RRR+ Q+ +N+ H I PQ++K+++ ++I Sbjct: 544 NDHGKVIMYADAITDSMRKAMDETERRRKIQMAYNEAHGITPQTIKKEVRDLI------- 596 Query: 741 AATTNISIDAQQ-------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + +S D Q+ SLS+ + + L L +M A +NFE AA +RD I L Sbjct: 597 KISKEVSSDEQEENILQQFKSLSRVQREEELDRLEMEMRQHAKAMNFEAAAELRDIIMEL 656 Query: 794 KSSPY 798 K+ Y Sbjct: 657 KAVFY 661 >gi|310828631|ref|YP_003960988.1| excinuclease ABC subunit B [Eubacterium limosum KIST612] gi|308740365|gb|ADO38025.1| excinuclease ABC subunit B [Eubacterium limosum KIST612] Length = 653 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/657 (52%), Positives = 457/657 (69%), Gaps = 9/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQ AI +L GI K Q LLGVTGSGKT+TMAKVIEA+Q+P +++A Sbjct: 4 FKVVSDYEPKGDQEKAIRELADGIDKGMKFQTLLGVTGSGKTYTMAKVIEAVQKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAYVP +D YIEK+SSIN++ID+MRH Sbjct: 64 HNKTLAAQLANEFRSFFPENAVEYFVSYYDYYQPEAYVPHSDLYIEKDSSINDEIDKMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVV+SVSCIYG+GS Y +++ L+ G ++ ++ LV QY R Sbjct: 124 SATAALFERRDVIVVASVSCIYGLGSPIDYENLVLSLRPGMEKDRDAVIRKLVDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R FRV GD +EI+P+ A R+ FG++I+ I+E +TG+ + + I+ Sbjct: 184 DIAFERNNFRVRGDILEIYPAASSGKAVRLEFFGDEIDRITEIDTITGEITGELSHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T L+ A+K I++EL R +L+EAQR+ QR YDLEML+ G C Sbjct: 244 PASHYTTTPEKLDVAIKGIRDELADRYDYFTGHNQLVEAQRILQRTNYDLEMLKEMGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+RY+ G PG PP TL +Y P+D L+F DESHV+IPQI GM GD RK L +Y Sbjct: 304 GIENYTRYINGSPPGAPPYTLIDYFPKDFLIFADESHVSIPQIGGMSSGDRARKQNLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + SATP +E E + VEQIIRPTGL+DP + Sbjct: 364 GFRLPSAYDNRPLNFEEFEGKINQIVFTSATPSKYEKEHSEQ-TVEQIIRPTGLIDPEIF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN +G R+L+T LTK+MAEDLT+Y E IRV Y+HS++ T+E Sbjct: 423 VRPIKGQIDDLMSEINETVSKGNRVLVTTLTKKMAEDLTQYFKENGIRVNYLHSDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +I+++LR+G+FDVLVGINLLREGLD+PE GLVAILDADKEG+LRS+TSLIQTIGRAAR Sbjct: 483 RTKILKELRMGEFDVLVGINLLREGLDLPEVGLVAILDADKEGYLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739 NV KV++YAD IT+S+ AI ET RRR+ Q E N+ H I PQSV ++I + ++ + E Sbjct: 543 NVEGKVLMYADRITRSMDYAITETNRRRKIQSEFNEAHGIIPQSVHKEIHDSLEVTKVAE 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D A+ + + + +A + +L +M AA+NL FE+AA +RD IK LK + Sbjct: 603 DQASYVVEDEVMDV-------EAEIMNLEAEMLTAAENLEFEKAAALRDRIKELKGN 652 >gi|209527301|ref|ZP_03275811.1| excinuclease ABC, B subunit [Arthrospira maxima CS-328] gi|209492289|gb|EDZ92634.1| excinuclease ABC, B subunit [Arthrospira maxima CS-328] Length = 665 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/657 (53%), Positives = 457/657 (69%), Gaps = 4/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AIAQL++ I S LLG TG+GKTFT+A I + RP +V+A Sbjct: 4 FELKAPFQPTGDQPLAIAQLIQSIKSGHPKTTLLGATGTGKTFTIAATIAQLGRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + L++G+ ++Q++LL L QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPTEYLNAAIPLRVGEDLDQRQLLRDLASIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ +++++T+ IY Sbjct: 184 DTEITRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEVLQSLDTLNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L+ A I ELK +L ELEK G+LLEAQRL+QR YDLEML G C Sbjct: 243 PARHFVTPGDRLDAACDAIAAELKQQLAELEKAGKLLEAQRLDQRARYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR PG PP L +Y P+D LL VDESHVT+PQI MY GD RK L E+ Sbjct: 303 GVENYSRHLAGRLPGSPPECLVDYFPDDWLLVVDESHVTVPQIRAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I+VSATPG WE+ Q QG +VEQ+IRPTG+VDP + Sbjct: 363 GFRLPSAADNRPLKSEEFWQKVKQCILVSATPGDWEIAQSQGQVVEQVIRPTGVVDPEIF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + R+L+T LTKRMAEDLTEYL ER IRVRY+HSE+++++ Sbjct: 423 VRPTTGQVDDLIAEIQERIPRNERVLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIQSIQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++ L+ G+FDVL+G+NLLREGLD+P+ LVAI DADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEILQSLQEGEFDVLIGVNLLREGLDLPQVSLVAIFDADKEGFLRTERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V + ILYAD +T S++ AI ET RRR QLE+N+K+ I P+S+ + I L Sbjct: 543 HVRGQAILYADNMTDSMRAAIAETNRRRTIQLEYNQKYGITPKSIHKTSSNAILAFLDVS 602 Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ID Q L ++ ++ L +M AA L FEEAA+ RD I+ L+ Sbjct: 603 RRLNYQQIDLPCPQVDDLPLEEIPTLIQQLEVRMKEAAQQLEFEEAAQFRDRIRILR 659 >gi|213966506|ref|ZP_03394676.1| excinuclease ABC, B subunit [Corynebacterium amycolatum SK46] gi|213950856|gb|EEB62268.1| excinuclease ABC, B subunit [Corynebacterium amycolatum SK46] Length = 710 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/672 (52%), Positives = 469/672 (69%), Gaps = 19/672 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ PSGDQP AIA+L + + E+ +L+G TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVISEFEPSGDQPQAIAELSERLDRGEREVVLMGATGTGKSATAAWLIEKVQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E ++ P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 88 PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY V LK G+ V++ + L LV QY R Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVWLKEGEEVDRDQFLRLLVDIQYARN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD ++I P++ E+ A RV FG++I+ + P+TG I V ++I+ Sbjct: 208 DIAFTRGTFRVKGDVVDIIPAY-EEKAVRVEFFGDEIDSLYYLNPVTGDVIDQVPELRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ IK EL RL +LE G+LLEAQRL R YDLEM+E G C Sbjct: 267 PATHYVAGPERMERAVADIKAELAERLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG P TL +Y PED L +DESHVT+PQI GM+ GD RK L ++ Sbjct: 327 GIENYSRHIDGRAPGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDASRKRNLVDF 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E++ + +SATPG +ELE+ G VEQ+IRPTGLVDP + Sbjct: 387 GFRLPSALDNRPLTFDEFDARVGQVVFMSATPGDYELEKAGGEYVEQVIRPTGLVDPKIV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EI ++ R+L+T LTK+MAEDLT+YL E ++VRYMHS+V TL+ Sbjct: 447 VKPTEGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLENGVQVRYMHSDVDTLK 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736 NV+ +V +YAD IT S++ AIDET RRREKQ+ +N +H I+PQ +++KI +++D + Sbjct: 567 NVSGEVHMYADKITDSMRFAIDETERRREKQIAYNTEHGIDPQPLRKKIADILDQVYDNA 626 Query: 737 --------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 LL A + + A + + + +A + L +QM AA L FE Sbjct: 627 DTDYEGKTGAAADALLSRADGSGAADGASGKQMPRAELEALIADLSEQMAAAARELKFEL 686 Query: 783 AARIRDEIKRLK 794 A R+RDEI LK Sbjct: 687 AGRLRDEIFDLK 698 >gi|295109576|emb|CBL23529.1| excinuclease ABC, B subunit [Ruminococcus obeum A2-162] Length = 662 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/656 (52%), Positives = 460/656 (70%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+KG + + LLGVTGSGKTFTMA VI + +P +V+A Sbjct: 4 FELHSEYKPTGDQPQAIEKLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDTYI K++S N++ID++R Sbjct: 64 HNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSTDTYIAKDASTNDEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D IVVSSVSCIYG+G+ E + M++ L+ G ++ +++ L+ QY R Sbjct: 124 SATAALCERRDVIVVSSVSCIYGLGAPEEFFDMMISLRPGMEKDRDDVIKELIDIQYNRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RGTFRV GD +EIFP++ D A RV FG++I+ I+E LTG+ ++ I+ Sbjct: 184 EMDFHRGTFRVRGDVLEIFPANYSDHAIRVEFFGDEIDRITEVDVLTGEIRSELKHAAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A I EE+K ++ + E +L+EAQR+ +R +D+EM++ TG C Sbjct: 244 PASHYVVPQSQIQRAADAILEEMKEQVACFKGEDKLIEAQRIAERTNFDVEMMKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LTG PG+PP TL +Y +D LL +DESH T+ Q+ GMY GD RK TL +Y Sbjct: 304 GIENYSRHLTGLAPGQPPYTLMDYFKDDFLLIIDESHKTVSQVGGMYAGDQSRKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATPG +E + + + EQIIRPTGL+DP VE Sbjct: 364 GFRLPSAKDNRPLSFDEFENKLDQVMFVSATPGQYEADH-EMLRAEQIIRPTGLLDPKVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N ++G +IL+T LTKRMAEDLT+Y+ + IRVRY+HS++ TLE Sbjct: 423 VRPVEGQIDDLIGEVNKEVEKGNKILITTLTKRMAEDLTDYMKDVGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR Q +NK+H I P ++K+ + ++I + Sbjct: 543 NSEGHVIMYADVMTDSMRKAIQETERRRSIQEAYNKEHGITPTTIKKAVRDLI--TVSRA 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T + S+++K+ + + KQM AA +LNFE+AA +RD++ LK + Sbjct: 601 VAETEDKLKKDPESMTRKELTKLIGQVEKQMRAAAADLNFEQAAELRDKMIELKKN 656 >gi|170782354|ref|YP_001710687.1| excinuclease ABC subunit B [Clavibacter michiganensis subsp. sepedonicus] gi|189037958|sp|B0RES6|UVRB_CLAMS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|169156923|emb|CAQ02091.1| ABC excision nuclease subunit B [Clavibacter michiganensis subsp. sepedonicus] Length = 688 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/675 (49%), Positives = 474/675 (70%), Gaps = 18/675 (2%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 ++ + F++ +DY PSGDQP AIA+L +++ E +LLG TG+GK+ T A +IE +QR Sbjct: 4 TRSVRPFKVVSDYSPSGDQPTAIAELAGRVNAGEPDVVLLGATGTGKSATAAWLIEKVQR 63 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +++A NK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+N + Sbjct: 64 PTLILAHNKTLAAQLATEFRELMPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNAE 123 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 ++R+RHS T SLL R D +VVS+VSCIYG+G E Y +V L++G + + L+ V Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGQPEQYMNAMVALQVGMQINRDTLIRKFVS 183 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 QY+R D+ RG FRV GD+IEI P + E++A R+ MFG++IE + + +PLTG +R + Sbjct: 184 MQYQRNDVDFSRGNFRVRGDTIEIIPMY-EELAIRIEMFGDEIEALYQLHPLTGDVVRKM 242 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + + ++ SHYV + A+ I++EL+ RL LE+EG+LLEAQRL R +D+EM++ Sbjct: 243 DAVSVFPGSHYVAETEVMQRAIGTIQQELEERLAVLEREGKLLEAQRLRMRTNFDIEMMQ 302 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494 G C IENYSR++ GR+ GE P L +Y P+D L+ +DESHVT+PQI M+ GD RK Sbjct: 303 QIGFCSGIENYSRHIDGRDAGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMFEGDSSRK 362 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 TL E+GFRLPS +DNRPL++ E+ P T+ +SATPG +EL G +VEQIIRPTGL Sbjct: 363 RTLVEHGFRLPSALDNRPLKWNEFTERVPQTVYMSATPGKYELGMGDG-VVEQIIRPTGL 421 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP + ++ + Q++D+ ++I + ++ RIL+T LTK+MAE+LT+Y E +RVRY+HS Sbjct: 422 IDPAIVVKPTKGQIDDLLEQIRIRVEKDERILVTTLTKKMAEELTDYFAEAGVRVRYLHS 481 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 +V TL R+E++ +LR G +DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQT Sbjct: 482 DVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 541 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARNV+ +V +YAD +T S++ AI+ET RRREKQ+ +N +H I+P ++++I ++ + Sbjct: 542 IGRAARNVSGEVHMYADVLTDSMKRAIEETDRRREKQVAYNTEHGIDPTPLRKRIADITE 601 Query: 735 PILLEDAATTNISIDAQQLSLS------KKKGKAH---------LKSLRKQMHLAADNLN 779 IL + T ++ + +++GKA + L QM AA L Sbjct: 602 -ILAREGEDTKKMLEGRGGGKRSPTPNLRREGKAAAGANELETIISDLNDQMLQAAGELK 660 Query: 780 FEEAARIRDEIKRLK 794 FE AAR+RDE+ LK Sbjct: 661 FELAARLRDELGDLK 675 >gi|75910876|ref|YP_325172.1| excinuclease ABC subunit B [Anabaena variabilis ATCC 29413] gi|75704601|gb|ABA24277.1| Excinuclease ABC subunit B [Anabaena variabilis ATCC 29413] Length = 665 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/664 (52%), Positives = 458/664 (68%), Gaps = 12/664 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F +Q + P+GDQP+AIAQL+ I + Q LLG TG+GKTF++A VIE + RP + Sbjct: 1 MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID Sbjct: 61 VLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + L+IG V Q+E+L L QY Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ I +++ + Sbjct: 181 SRNDVEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A + I ELK R ELE+ G+L+EAQR++QR YDLEML G Sbjct: 240 NIYPARHFVTPEERLEVACEDIAYELKQRKAELEEAGKLVEAQRIDQRTRYDLEMLREVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR GEPP +L +Y P+D LL +DESHVT+PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS DNRPL+ EE+ I VSATPG+WELE + IVEQ+IRPTG++DP Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R Q++D+ EI R+L+T LTKRMAEDLTEYL E ++VRY+HSE+ Sbjct: 420 EISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEIN 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +++RIEI++DLR G FDVLVG+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGR Sbjct: 480 SIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IM 730 AAR++ + ILYAD +T S+ A++ET RRR Q+ +NK H I PQ + +K + Sbjct: 540 AARHIRGQAILYADNMTDSMIKAVEETDRRRNIQVAYNKLHGITPQPIVKKSSNAILSFL 599 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 EV + D ID L ++ + L QM A+ L FEEAA++RD I Sbjct: 600 EVSRRLNATDLKVVEEHID----ELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRI 655 Query: 791 KRLK 794 K+L+ Sbjct: 656 KQLR 659 >gi|118617256|ref|YP_905588.1| excinuclease ABC subunit B [Mycobacterium ulcerans Agy99] gi|189037984|sp|A0PP48|UVRB_MYCUA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|118569366|gb|ABL04117.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium ulcerans Agy99] Length = 701 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/693 (51%), Positives = 477/693 (68%), Gaps = 33/693 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I + E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVISPHDPAGDQPAAINELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+L++G V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGTDVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ ED+A R+ FG+ IE + +PLTG +R V++++I+ Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EDLAVRIEFFGDGIEALYYLHPLTGDVVRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE G+LLEA RL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAQAISTIEEELAERLAELEGHGKLLEAHRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED LL +DESHVT+PQI GMY GD RK L E+ Sbjct: 306 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEF 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL++EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSAVDNRPLQWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A+ R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRQRAEVDQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D + E Sbjct: 546 NVSGEVHMYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYREA 605 Query: 740 --DAATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQ 770 A ++ I + S+ + G+A +K L Q Sbjct: 606 DDTEAAESVPIGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTSTMPRAELADLIKDLTSQ 665 Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 M +AA +L FE AAR RDEI LK +G+D Sbjct: 666 MMVAARDLQFELAARFRDEIADLKKE--LRGMD 696 >gi|148241173|ref|YP_001226330.1| excinuclease ABC subunit B [Synechococcus sp. RCC307] gi|147849483|emb|CAK26977.1| Helicase subunit of the DNA excision repair complex [Synechococcus sp. RCC307] Length = 668 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/662 (51%), Positives = 462/662 (69%), Gaps = 11/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AI L++G+ ++ Q LLG TG+GKTF++A VI+ RPA+V+A Sbjct: 3 FRLEAPYSPNGDQPTAIETLVQGVEGGQRYQTLLGATGTGKTFSIANVIQRTGRPALVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 63 HNKTLAAQLCNELRQFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V +G+++ + L LV QY R Sbjct: 123 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFSVGETLNLRGSLRELVNNQYSRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FRV GD +EI P++ ED R+ +FG+++E I P TG+ ++++ETI IY Sbjct: 183 DTEIARGRFRVKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L +A+ I++EL+ RL L G+LLEAQRLEQR YD+EML+ G C Sbjct: 242 PAKHFVTPKDRLESAVGAIRQELRDRLDWLNANGKLLEAQRLEQRTVYDIEMLQQVGYCN 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 302 GVENYARHLAGREAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDRSRKQVLIDH 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ E+ TI VSATPG WE++ G + EQ+IRPTG++DP +E Sbjct: 362 GFRLPSAADNRPLKGTEFWDKAKQTIFVSATPGDWEMQVSDGQVAEQVIRPTGVLDPLIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI + A++ R+L+T LTKRMAEDL++YL E ++VRYMHSE+ ++E Sbjct: 422 VRPSGGQVDDLLGEIRVRAERNERVLVTTLTKRMAEDLSDYLAENQVKVRYMHSEIHSIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 482 RIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V+ +LYAD +T S+ AI ET RRR Q+ +N+KH I P + +K +PIL Sbjct: 542 HVSGVALLYADNMTDSMVKAISETERRRAIQMAYNEKHGITPHAAGKKSTH--NPILAFL 599 Query: 738 -----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 L D +A+Q ++ + ++ L ++M AA L+FEEAA +RD IK+ Sbjct: 600 EMSRKLNDEQLDEAVEEAKQDAVPLENLPELIQQLEERMKGAASKLDFEEAANLRDRIKQ 659 Query: 793 LK 794 L+ Sbjct: 660 LR 661 >gi|282897605|ref|ZP_06305605.1| Excinuclease ABC, B subunit [Raphidiopsis brookii D9] gi|281197528|gb|EFA72424.1| Excinuclease ABC, B subunit [Raphidiopsis brookii D9] Length = 665 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/658 (52%), Positives = 461/658 (70%), Gaps = 6/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P+GDQP AIAQ++K I +++ Q LLG TG+GKTF++A VIE + +P +V+A Sbjct: 4 FTLQAPFSPTGDQPQAIAQMIKNIEGKQRYQTLLGATGTGKTFSIAAVIEKVGKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK S+IN +ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVTDTYIEKTSAINSEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + + L+IG ++ +E++ L+ QY R Sbjct: 124 SATRSLFEREDVIVVASISCIYGLGMPAEYLKAAINLEIGMEIDPREVIRKLISVQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD IEI P++ ED RV FG+DI+ I P+ G+ + ++E I IY Sbjct: 184 DIEMGRGKFRVRGDVIEIGPAY-EDRIVRVEFFGDDIDAIRYVDPVNGEIMSSLERISIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A I +ELK ++LE+ G+L+EAQR++QR YD+E+L G C Sbjct: 243 PARHFVTPKERLEIACVEIADELKAYKLKLEELGKLVEAQRIDQRTRYDIELLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSRYL GR GEPP L +Y P+D LL +DESHVT+PQI GMY GD RK L ++ Sbjct: 303 GVENYSRYLAGRQAGEPPECLIDYFPQDWLLVIDESHVTVPQIRGMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I VSATPG WE+E IVEQIIRPTG++DP + Sbjct: 363 GFRLPSAGDNRPLKAEEFWQKVSQCIFVSATPGDWEIEISGKNIVEQIIRPTGVLDPQIY 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+++ EI+ R+L+T LTKRMAEDLTEYL R++RVRY+HSE+ +++ Sbjct: 423 VRPTAGQVDNLLGEIHQRVDNSERVLITTLTKRMAEDLTEYLENRSVRVRYLHSEINSIQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++DLR G FDVLVG+NLLREGLD+PE LV I+DADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEILQDLRNGSFDVLVGVNLLREGLDLPEVSLVVIMDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVIDPI 736 ++ VI+YAD +T S+ A++ET RRR Q+ +N+ H I PQ V +K I+ +D Sbjct: 543 HLRGTVIMYADNLTGSMIKAMEETDRRRGIQMAYNQIHKITPQPVFKKSGNSILSFLDVS 602 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +A + +D Q L+ ++ + +L KQMH AA + FE AA++RD IK L+ Sbjct: 603 RRLNANDLKL-VDEQWHDLNLEEIPQLITTLEKQMHDAAKKMEFEHAAKLRDRIKSLR 659 >gi|255038399|ref|YP_003089020.1| excinuclease ABC subunit B [Dyadobacter fermentans DSM 18053] gi|254951155|gb|ACT95855.1| excinuclease ABC, B subunit [Dyadobacter fermentans DSM 18053] Length = 672 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/671 (50%), Positives = 476/671 (70%), Gaps = 11/671 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL++GI + E Q LLGVTGSGKTFT+A V+ + +P +V++ Sbjct: 3 FELTSEYQPTGDQPEAINQLIQGIENGEPAQTLLGVTGSGKTFTVANVVAKVNKPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++ T+TYIEK+ IN++I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPGNAVEYFISYYDYYQPEAFISSTNTYIEKDLMINQEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SL+ R D IVV+SVSCIYG G+ Y + IV K+GD V + + L LV+ Y R Sbjct: 123 HTVSSLMSGRRDVIVVASVSCIYGAGNPLEYKKSIVSAKLGDVVPRNQFLFRLVEILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RGTFRV GD++++FP + D A+R FG++IEEI P TG+KI + + I I Sbjct: 183 TEVEFNRGTFRVKGDTVDVFPGY-ADFAYRFIFFGDEIEEIQRIEPETGKKISSEKAIAI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT R LN ++K I+++L+M++ EGRL EA+R+++R +D+EM+ G C Sbjct: 242 FPANLFVTGRDVLNQSIKEIQDDLQMQIKYFIGEGRLAEAERVKERTEFDMEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG+ P L +Y PED L+ VDESHVT+PQI M+ GD RK L E Sbjct: 302 SGIENYSRYFDRRMPGQRPFCLLDYFPEDFLMVVDESHVTMPQIRAMWGGDRSRKEALVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ + P TI VSATP +EL + +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPSALDNRPLTFQEFEDMTPQTIFVSATPADYELRKSEGVVVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + G RIL+T LTKRMAE+L++YL I+ RY+HSEVK L Sbjct: 422 EVRPSLNQIDDLLEEITERIKLGDRILVTTLTKRMAEELSKYLDRVGIKCRYIHSEVKAL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+R+LRLG FDVLVG+NLLREGLD+PE LVAI+DADKEGFLR S+IQTIGRAA Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDTRSMIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN KVI+YADTIT S+QLAIDET RRR Q+++N + I P++V++ +++ + Sbjct: 542 RNDRGKVIMYADTITGSMQLAIDETNRRRSIQMDYNLANGITPKTVRKSKEAIMEQTSVA 601 Query: 740 DAATTNISIDAQQLSLS-----KKKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEI 790 D+ + ++ +++ ++ + GK L+ L +++M AA +L+F EAAR+RDE+ Sbjct: 602 DSKVRKVYVEPEEVRIAADPVVQYMGKTDLQKLIAETQRKMESAAKDLDFLEAARLRDEL 661 Query: 791 KRLKSSPYFQG 801 +LK+ QG Sbjct: 662 LQLKARVQEQG 672 >gi|184200839|ref|YP_001855046.1| excinuclease ABC subunit B [Kocuria rhizophila DC2201] gi|183581069|dbj|BAG29540.1| UvrABC system protein B [Kocuria rhizophila DC2201] Length = 711 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/688 (50%), Positives = 474/688 (68%), Gaps = 36/688 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AIA+L + I EK +L+G TG+GK+ T A +IEA+QRP +++ Sbjct: 14 FEVVSEFQPAGDQPKAIAELSERIQGGEKDVVLMGATGTGKSATAAWLIEAVQRPTLLLV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVS+VSCIYG+G+ E Y + +V L +G +++ LL V QY R Sbjct: 134 SATNALLTRRDTVVVSTVSCIYGLGTPEEYVKQMVTLAVGQEMDRDALLRQFVNMQYVRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E+ A R+ FG++IE I +PLTG+ I + + ++ Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EENALRIEFFGDEIEAIYTLHPLTGEVINEEQEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + TA++ I++EL+ RL ELE + +L+EAQRL R YDLEM+E G C Sbjct: 253 PASHYVAGAERMATAIESIQQELQERLQELESQNKLVEAQRLRMRTQYDLEMMEQMGYCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G P L +Y P+D LL +DESHVT+PQI GMY GD RK TL ++ Sbjct: 313 GIENYSLHIDGRPRGSAPHCLLDYFPDDFLLIIDESHVTVPQIGGMYEGDMSRKRTLVDH 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ + +SATPG +E+ + + VEQIIRPTGLVDP V Sbjct: 373 GFRLPSAMDNRPLKWGEFLERIGQAMYMSATPGPYEMSKVDSV-VEQIIRPTGLVDPQVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ ++I L ++ R+L+T LTKRMAEDLTEYL E ++V+Y+HS+V TL+ Sbjct: 432 VKPTKGQIDDLLEQIELRVERDERVLVTTLTKRMAEDLTEYLMEHGVKVQYLHSDVDTLK 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT+S+ +AI+ET RRRE Q+ +N +H I+PQ +++KI ++ D + ED Sbjct: 552 NVSGEVHMYADKITRSMDVAIEETNRRREIQVAYNTEHGIDPQPLRKKIADITDQLARED 611 Query: 741 AATTNI------------SIDAQQLSLSKKKGKAH----------------------LKS 766 T + + + S+K G A ++S Sbjct: 612 EDTKTLLAQRSAANNHTAPVKGGKGKNSEKDGAAAAAESKLLRDGVAAAPAEDLVELIES 671 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +QM AA L FE A R+RDEI LK Sbjct: 672 LSEQMRNAAAELKFELAGRLRDEIADLK 699 >gi|291544070|emb|CBL17179.1| Excinuclease ABC subunit B [Ruminococcus sp. 18P13] Length = 656 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/655 (53%), Positives = 463/655 (70%), Gaps = 6/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQP AI QL++G++ EK Q+LLGVTGSGKTFTMA VI + RP +V+A Sbjct: 6 FHLKSDYQPAGDQPEAIQQLVEGLNQGEKGQVLLGVTGSGKTFTMANVIAQVNRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD++IEK+ +IN++IDR+RH Sbjct: 66 HNKILAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDSFIEKDCAINDEIDRLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y M+V ++ G +++L+S LV+ QY+R Sbjct: 126 SATTALAERRDVIIVASVSCIYSLGSPEEYRSMVVSVRQGMEKSREQLMSELVRIQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + R FRV GD +EI S D A R+ FG++I+ I+E +TG+ + ++ I+ Sbjct: 186 DISLERNKFRVRGDVLEICTSGTADHALRIEFFGDEIDRITEINMVTGEILATLQHAAIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ R L A+ I+ E++ R+ E +L+EAQR+ QR YD+EML G C Sbjct: 246 PASHYIVGRDKLEDAIADIEAEMQERVAFFEANHQLIEAQRIAQRTRYDIEMLREIGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+ R PG P TL ++ P+D LL VDESHVT+PQ+ M GD RK TL +Y Sbjct: 306 GIENYSRVLSRRPPGSVPYTLLDHFPKDFLLIVDESHVTLPQVRAMQAGDHARKKTLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+N I VSATPG E E+ G IVEQ+IRPTGL+DP V Sbjct: 366 GFRLPSAYDNRPLNFAEFNEHIGQAIYVSATPGPLEKERS-GRIVEQVIRPTGLLDPLVT 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q+ED+ EI+ + R+L+T LTKRMAEDLT+YL +RVRY+H ++ T++ Sbjct: 425 VKPIQGQMEDLLSEIHKRTDRQERVLVTTLTKRMAEDLTDYLEGMGVRVRYLHHDIDTIK 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR+G+FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 485 RMEIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S++ AI ET RRR Q+ +N+ H I P+++ + + EV LE Sbjct: 545 NAQGEVIMYADCVTGSMERAITETERRRSIQMAYNEAHGIIPKTIHKDVREV-----LEI 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + +SKK+ + + +L QM +A L FE AA +RD+I +L++ Sbjct: 600 SSKETVEQETHAPKMSKKERQKLIATLTDQMKQSAKMLEFEHAAYLRDKIAQLQA 654 >gi|269792460|ref|YP_003317364.1| excinuclease ABC, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100095|gb|ACZ19082.1| excinuclease ABC, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 671 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/654 (51%), Positives = 460/654 (70%), Gaps = 10/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI +L++G+ S Q LLGVTGSGKT+TMA VIEA+QRP +V+A Sbjct: 4 FVLNSPWPPAGDQPRAIEELVEGVRSGLSRQTLLGVTGSGKTYTMANVIEALQRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N+V+YFVSYYDYYQPEAY+P D YIEK++SINE+I+++R Sbjct: 64 HNKTLAAQLYSEFKEFFPKNSVQYFVSYYDYYQPEAYLPAQDVYIEKDASINEKIEKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ER D IVV+SVSCIYG+G ++Y I + K+GDS +++ LS LV Y R Sbjct: 124 SATKALIERRDVIVVASVSCIYGLGKKKNYEDAIFRFKVGDSFDRRSFLSKLVDNFYGRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ GTFRV GD+++I+PS+ D A RV F + IE++ E P++G+ + ++ Sbjct: 184 DMAFEPGTFRVRGDTVDIYPSY-SDTALRVVFFDDQIEQVLEMDPVSGRILDRRSDGAVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT + + A++ I+ EL+ RL +L G+LLEAQRLE R YD+EML G C Sbjct: 243 PAQHYVTDKDRMGQAIRAIENELEERLGDLMSRGKLLEAQRLESRTRYDMEMLSEVGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +++PED LLF+DESH+TIPQ+ GMY GD RK L E+ Sbjct: 303 GIENYSRHLEGRAPGEPPGTLMDFLPEDYLLFIDESHITIPQVRGMYNGDRARKEILVEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRF+E+ T I VSATPG +E+ Q +VEQIIRPTG++DP VE Sbjct: 363 GFRLPSCLDNRPLRFDEFEEHMRTVIFVSATPGDYEMATSQR-VVEQIIRPTGVLDPMVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ARTQVED+ E+ +G+R L+T LTKR +EDL +YL I+V+Y+H ++ E Sbjct: 422 VRPARTQVEDLIGELRAEQDRGMRSLVTTLTKRSSEDLAQYLEGMGIKVKYIHGDLDAFE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+++DLR G F LVG+NLLREG+D+PE LVAIL+AD+EG+LRS SLIQ IGRAAR Sbjct: 482 RAELLKDLRSGVFSTLVGVNLLREGIDLPEVSLVAILEADREGYLRSARSLIQMIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+ +VILY D +T S+++A++ET RRR Q E+N++ I P+S+ + + ++ L+ + Sbjct: 542 NMAGRVILYGDQVTDSMRVAMEETLRRRRIQEEYNRRMGIEPRSISKAVRSLLPQELVSE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ D ++ L L + M A + L FEEAARIRD I L+ Sbjct: 602 PSSARGRED--------REVSVDLDQLEEMMWRAVERLEFEEAARIRDRIASLR 647 >gi|219848326|ref|YP_002462759.1| excinuclease ABC subunit B [Chloroflexus aggregans DSM 9485] gi|254764902|sp|B8G8R1|UVRB_CHLAD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|219542585|gb|ACL24323.1| excinuclease ABC, B subunit [Chloroflexus aggregans DSM 9485] Length = 664 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/659 (51%), Positives = 461/659 (69%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AI +L+ G+ + + Q LLG TG+GKTF MA + +QRP +V+A Sbjct: 3 FRIEAPYQPTGDQPQAIEKLVAGLRAGYRHQTLLGATGTGKTFVMAHIFAQIQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L +QL++EF+ F P AVE F+SYYD Y PEAYVP D YIEKE+SINE+IDR+RH Sbjct: 63 HNKTLVSQLWAEFREFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++LL R D ++V+SVS I+G+GS Y Q + L+ G+ + +LL L+ Q++R Sbjct: 123 AATQALLTRRDVLIVASVSAIFGLGSPHDYGQEKIHLRTGEVRNRDKLLRQLIDLQFERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD+++I P++ E A RV +G++IE I E PLTG+ + ++IY Sbjct: 183 DVDFQRGTFRVRGDTLDIIPANAE-TAIRVEFWGDEIERIVELDPLTGEVLLKHTAVEIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + L A+ I+ EL RL ELE G+LLEAQRL+QR YDLEML G C Sbjct: 242 PAKHFVTTKEKLQLAIVSIQAELNERLQELEAAGKLLEAQRLKQRTLYDLEMLSEVGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PG+ P TL +Y P+D L+F+DESH+TIPQ+ GMY GD RK TL +Y Sbjct: 302 GIENYSRHLDGRAPGQTPWTLLDYFPDDFLMFIDESHITIPQLRGMYNGDRQRKQTLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I VSATPG +E E+ + I VEQIIRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPLKFEEFEQHVYQVIYVSATPGPYEREKSEQI-VEQIIRPTGLLDPEIE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI ++ R+L+T LTKRMAEDL +YL E +R Y+H+++ T+E Sbjct: 421 VRPTRGQIDDLLGEIRRRVERKQRVLVTTLTKRMAEDLADYLKEMGVRTMYLHADIDTIE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+TSLIQ IGRAAR Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737 ++ KVI+YADTIT+S+++AI ET RRRE Q+ HN +H I PQ + + + ++ D I Sbjct: 541 HIEGKVIMYADTITRSMEVAIRETQRRREIQMAHNVRHGITPQGIAKGVRDLTDRIRKVA 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E A + L + + +K L KQM AA L FE+AA +RD+I L+ + Sbjct: 601 EERGEYVTTPETAVPVDLPRDEVLKLIKDLEKQMKQAAKALAFEKAAALRDQIVELRQA 659 >gi|326803911|ref|YP_004321729.1| excinuclease ABC, B subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650308|gb|AEA00491.1| excinuclease ABC, B subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 664 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 468/655 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI +L++G+ + +K Q+LLG TG+GKTFTMA VI RP +V+A Sbjct: 5 FELVSSYQPSGDQPQAIKKLVEGVENNDKAQVLLGGTGTGKTFTMANVIAETNRPTLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +D+YIEK +S+N++ID++RH Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPSSDSYIEKSASVNDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D I+V+SVSCIYG+ Y ++ ++ G V++ + + LV QY+R Sbjct: 125 SATSSILERRDTIIVASVSCIYGLVDPMEYKNHVLSIRQGQEVDRNDFMRRLVDMQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +E+F + A RV FG++I+ I + LTG+ +V+ IY Sbjct: 185 DIEFRRGTFRVRGDVVEVFLPSRDSEAIRVEFFGDEIDRIRQVDVLTGEVKNDVKHYPIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V + A+ I+ EL+++L + EG+LLEAQRLEQR YD+EML G C Sbjct: 245 PATHFVVDYNKMQRAVDSIEAELEVQLKKFNDEGKLLEAQRLEQRTRYDIEMLLEMGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG+PP TL ++ P+D LL VDESH+T+PQ+ GMY GD RK L +Y Sbjct: 305 GIENYSRHMDGRAPGQPPYTLLDFFPDDYLLMVDESHMTMPQVRGMYNGDKARKEQLVDY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ I VSATPG +E+E+ G +VEQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLKLAEFEERVNQAIYVSATPGDYEIEKSNGEVVEQIIRPTGLLDPKVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN +G R+ +T LTK+M+EDLT+YL E I+V+Y+HS++KTLE Sbjct: 425 VRPIKGQIDDLISEINERVDRGDRVFVTTLTKKMSEDLTDYLEEVGIKVKYLHSDIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG FDVLVGINLLREG+D+PE LV ILDADKEGFLR++ SLIQTIGRAAR Sbjct: 485 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVIILDADKEGFLRNERSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YADT+T S+Q AIDET RRR Q +N++H+I P++++++I + I + Sbjct: 545 NENGHVIMYADTVTGSMQAAIDETARRRAIQEAYNEEHHITPKTIQKEIRDSIRITTAVN 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A N S+ +++ + + + ++ +M AA +LNFE+AA +RD I LK+ Sbjct: 605 NAEENESLMDTIRGMNRNEKEEAVHNVELEMRQAAKDLNFEKAAELRDIILELKA 659 >gi|320011418|gb|ADW06268.1| excinuclease ABC, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 706 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/700 (51%), Positives = 485/700 (69%), Gaps = 45/700 (6%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + F++ + Y PSGDQP AIA+L + + + EK +LLG TG+GK+ T A +IE Sbjct: 4 VSKIERSVAPFEVVSPYQPSGDQPTAIAELDRRVRAGEKDVVLLGATGTGKSATTAWMIE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VMAPNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS Sbjct: 64 KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y +VQLK+GD V++ +LL Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEVDRDQLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 V+ QY R D+ RGTFRV GD+IEIFP + E++A R+ MFG++IE +S +PLTG+ Sbjct: 184 RFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 I ++ ++ SHYV + A+ I++EL+ RL ELEK+G++LEAQRL R TYD+ Sbjct: 243 ISEDTSLHVFPASHYVAGPERMEKAVTGIEKELEERLAELEKQGKMLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G+C +ENYS + GR+PG P TL +Y PED LL +DESHVT+PQI MY GD Sbjct: 303 EMLRQIGTCSGVENYSMHFDGRSPGTAPHTLLDYFPEDFLLVLDESHVTVPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK TL ++GFRLPS +DNRPL++EE+ T+ +SATPG +EL + G VEQIIR Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYLSATPGKYELSRGDG-FVEQIIR 421 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGLVDP V ++ Q++D+ EI ++ R+L+T LTK+M+EDLT+Y E I+VR Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMSEDLTDYFLELGIQVR 481 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE LVAILDADK+GFLRS TS Sbjct: 482 YLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTS 541 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD +T ++ AIDET RRREKQ+ +N + ++PQ +++KI Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKIN 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLS----KKKGKAHLKSLRK----------------- 769 +++ I E+ +D +QL + K KA + +L Sbjct: 602 DIVASIAREE-------VDTEQLLGTGYRQAKDTKAPVPALGGKAGAGAKAKKDGAVVTD 654 Query: 770 ---------------QMHLAADNLNFEEAARIRDEIKRLK 794 +M AA +L FE AAR+RDE+ LK Sbjct: 655 RPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELK 694 >gi|306820888|ref|ZP_07454508.1| excision endonuclease subunit UvrB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551002|gb|EFM38973.1| excision endonuclease subunit UvrB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 655 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/654 (52%), Positives = 468/654 (71%), Gaps = 5/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI + I+S K Q LLGVTGSGKTFTMA +I+ ++P +V+ Sbjct: 3 FEIISPYQPTGDQPKAIKTMSDSINSGNKFQTLLGVTGSGKTFTMANIIKETKKPTLVIT 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYV +DTYIEK+S+IN++ID++R+ Sbjct: 63 HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVAHSDTYIEKDSAINDEIDKLRY 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT ++LER D ++V+SVSCIYG+G Y +M+V L+ ++ E++ LV QY+R Sbjct: 123 SATAAILERRDVVIVASVSCIYGLGDPTDYLEMMVSLRPNQQKDRDEVIRELVDIQYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +RGTFRV GD +EI P++ ++ RV FG++IE I E LTG+ I E + I+ Sbjct: 183 DVNFVRGTFRVRGDILEILPANTDEKGIRVEFFGDEIERICEINYLTGEIIAQREHVSIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S YVT + + A++ I++ELK R+ E L+EAQR+ QR YD+EML G+C+ Sbjct: 243 PASLYVTSKEKMEKAIQGIEKELKDRIQYFEDNNMLVEAQRIAQRTKYDIEMLREIGNCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LTGR GE P TL ++ P+D L+ +DESHV +PQ+ MY GD RK +L +Y Sbjct: 303 GIENYSLHLTGRKVGERPFTLIDFFPKDFLIIIDESHVMLPQLHAMYAGDHSRKKSLIDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ + + VSATP +ELE EQ+IRPTGL+DP +E Sbjct: 363 GFRLPSAFDNRPLKFEEFESMINQIMFVSATPAKYELEHSSS-FGEQVIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL A++ R+L+T LTK+MAE LT YL IRV+Y+HS+V TL+ Sbjct: 422 VRPVDGQIDDLIGEINLRAEKNERVLVTTLTKKMAEKLTTYLENVGIRVKYLHSDVDTLD 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+IIRDLR+G+FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQT+GRAAR Sbjct: 482 RIKIIRDLRIGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD+IT+S+++AI+ET RRR Q +N++H I P ++ + EV D I+ Sbjct: 542 NSNGKVIMYADSITRSMKVAIEETLRRRTIQERYNEEHGITPTTIYK---EVRDLIVATK 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 AA + + +L ++ K + L ++M A+NL FE+AA++RD I+ ++ Sbjct: 599 AAEETTAYGVKD-TLEIEELKQRVIILTEEMLKCAENLEFEKAAKLRDTIREIE 651 >gi|315636043|ref|ZP_07891302.1| excision endonuclease subunit UvrB [Arcobacter butzleri JV22] gi|315479699|gb|EFU70373.1| excision endonuclease subunit UvrB [Arcobacter butzleri JV22] Length = 657 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/657 (53%), Positives = 464/657 (70%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AI L I + + LLGVTGSGKT+T+AKVIE +Q+P ++M Sbjct: 4 FKVVSDYEPSGDQPKAIEALSSSIKAGNQYNTLLGVTGSGKTYTIAKVIEKVQKPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN++++R+R Sbjct: 64 HNKTLAAQLYSEFKQFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IV++SVS YG+G+ Y M+ ++++G + QKE L L++ YKR Sbjct: 124 SATASLLSFDDVIVIASVSANYGLGNPSEYKAMVQRVEVGFNYSQKEFLLKLIEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+IFP++ ED RV FG+++E I++ +T K +++ + IY Sbjct: 184 DKFFDRADFRVNGDVIDIFPAYFEDEFIRVEFFGDEVESITKHEYITNTKTKDLNEVIIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + +V + L A+K I+EEL+ RL +KE +L+E QRL+QR+ +DLEM+E TG C+ Sbjct: 244 SVNPFVVTQENLGRAVKEIEEELEQRLDFFQKEQKLVEYQRLKQRVEFDLEMIEGTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ GE P +L FE + ED LL VDESHV++PQ GM+ D RK L Sbjct: 304 GIENYARHLTGQKAGETPYSLLDYFEQMDEDFLLVVDESHVSLPQFRGMHAADRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+F+E+ P + VSATP ELE ++ EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFDEFIKKAPHYVFVSATPNELELEMS-SVVAEQIIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++I + QVE ++DEI + R+L+TVLTK+MAE+L Y + I+V+YMHSE+ Sbjct: 423 IIDIIDSEFQVEKLHDEIKKVIAKNERVLVTVLTKKMAEELASYYADLGIKVKYMHSEID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR+LRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGR Sbjct: 483 AIERNQIIRELRLGTFDVLIGINLLREGLDIPETSLVAILDADKEGFLRSRTSLIQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N +VIL+A +T S+Q AIDET RRR+ Q E NK+HNI P+S K K+ E + Sbjct: 543 AARNENGRVILFAKKVTDSMQFAIDETNRRRKLQEEFNKEHNITPKSTKRKLDENLKLEE 602 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D A ++ S KK L L KQM AA +LNFEEA R+RDEI ++K Sbjct: 603 YDDVAWKKQKLEKMPASERKK----ILIELNKQMKKAASDLNFEEAIRLRDEIAKIK 655 >gi|291534604|emb|CBL07716.1| excinuclease ABC, B subunit [Roseburia intestinalis M50/1] Length = 660 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 463/655 (70%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L+KG + Q LLGVTGSGKTFTMA VI+A+ +P ++++ Sbjct: 4 FKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R Sbjct: 64 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVV+SVSCIYG+GS E Y M+V L+ G ++ +++ +LV QY R Sbjct: 124 SATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EIFP++ D A RV FG++I+ I+E LTG+ +E ++ Sbjct: 184 DMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A I++EL R+ + E +LLEAQR+ +R +D+EML+ TG C Sbjct: 244 PASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G G P TL +Y +D L+ VDESH+TIPQI GMY GD RK+TL +Y Sbjct: 304 GIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DP V Sbjct: 364 GFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTK+MAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 423 VRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++A++ET RRRE Q +N++H I P ++++ + E+I + + Sbjct: 543 NSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS--VSKK 600 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A ++ S+++ + + ++K+M AA +LNFE AA RD++ LK Sbjct: 601 VAKEEMNFKKAPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 655 >gi|291540621|emb|CBL13732.1| excinuclease ABC, B subunit [Roseburia intestinalis XB6B4] Length = 664 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 463/655 (70%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L+KG + Q LLGVTGSGKTFTMA VI+A+ +P ++++ Sbjct: 8 FKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTLIIS 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R Sbjct: 68 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L+ER D IVV+SVSCIYG+GS E Y M+V L+ G ++ +++ +LV QY R Sbjct: 128 SATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EIFP++ D A RV FG++I+ I+E LTG+ +E ++ Sbjct: 188 DMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVF 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ + A I++EL R+ + E +LLEAQR+ +R +D+EML+ TG C Sbjct: 248 PASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G G P TL +Y +D L+ VDESH+TIPQI GMY GD RK+TL +Y Sbjct: 308 GIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DP V Sbjct: 368 GFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVV 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ E+N + ++L+T LTK+MAEDLT+Y+ E IRV+Y+HS++ TLE Sbjct: 427 VRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 487 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT S+++A++ET RRRE Q +N++H I P ++++ + E+I + + Sbjct: 547 NSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS--VSKK 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A ++ S+++ + + ++K+M AA +LNFE AA RD++ LK Sbjct: 605 VAKEEMNFKKDPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 659 >gi|160893509|ref|ZP_02074294.1| hypothetical protein CLOL250_01060 [Clostridium sp. L2-50] gi|156864904|gb|EDO58335.1| hypothetical protein CLOL250_01060 [Clostridium sp. L2-50] Length = 662 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/656 (52%), Positives = 465/656 (70%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+ G + + LLGVTGSGKTFTMA VI + +P +V+A Sbjct: 4 FKLVSEYQPTGDQPQAIKELVDGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYV TDTYI K+S+IN+ ID+MRH Sbjct: 64 HNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVASTDTYIAKDSAINDDIDKMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L++R D +VVSSVSCIYGIG + Y + ++ L++G ++ ++ L QY R Sbjct: 124 SATAALIDRKDVVVVSSVSCIYGIGDPDEYREQMLSLRVGMIKDRDMVIDELTDIQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD +EI P + A RV FG++I+ I EF PLTG+ R++ I+ Sbjct: 184 DMDFHRGTFRVHGDVLEILPVSTFEDAVRVEFFGDEIDRICEFDPLTGEIRRSLNFTCIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV L A+ I+ EL R+ ++ +L+EAQR+E+R +D+EM+ TG C Sbjct: 244 PASHYVVGHEKLERALTKIEAELAERVQYFKENDKLIEAQRIEERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR GE P TL ++ +D LL +DESH+TIPQ+ GMY GD RK L +Y Sbjct: 304 GIENYSGPLSGRESGETPSTLLDFFGDDFLLIIDESHMTIPQVGGMYAGDRSRKQNLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E + + EQIIRPTGL+DPPV+ Sbjct: 364 GFRLPSALDNRPLNFEEFESKLDQVLFVSATPSKYEAEH-ELLRAEQIIRPTGLLDPPVD 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI +QG ++L+T LTKRMAEDLT++L E I+V+Y+HS++ T+E Sbjct: 423 VRPVEGQIDDLMSEILKETEQGHKVLVTTLTKRMAEDLTDFLRENGIKVKYLHSDIDTME 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RVEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD +T S++ AI ET RRR+ Q +NK+H I P+++++ I ++I + ED Sbjct: 543 NSEGHVIMYADMMTDSMKRAISETNRRRKIQDAYNKEHGIIPKTIQKSIRDLITNEVTED 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + D + S++KK+ KA + L K+M++AA +LNFE AA +RDE+K+ K + Sbjct: 603 KPVVDAEKDIE--SMTKKELKAMIDKLTKKMNMAAADLNFEMAAIVRDELKKYKEA 656 >gi|152990079|ref|YP_001355801.1| excinuclease ABC subunit B [Nitratiruptor sp. SB155-2] gi|151421940|dbj|BAF69444.1| excinuclease ABC, B subunit [Nitratiruptor sp. SB155-2] Length = 676 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/677 (51%), Positives = 467/677 (68%), Gaps = 27/677 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M Y P+GDQP AI +L I + Q LLGVTGSGKT+TMAK+IE +Q P ++M Sbjct: 4 FEMAAPYPPAGDQPEAIEKLSLSIKEGNRYQTLLGVTGSGKTYTMAKIIEKLQMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEFK+FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R+R Sbjct: 64 HNKTLAAQLFSEFKHFFPKNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLE +D IVV+SVS YG+G+ Y +M+ + + G+ + Q+ELL L++ YKR Sbjct: 124 SATASLLEYDDVIVVASVSANYGLGNPNEYRKMVFKFEEGNEIGQRELLFRLLEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++I+P++ ED A RV FG++IE I F PLT +K++ + TI +Y Sbjct: 184 DKFFDRGDFRVSGDVVDIYPAYFEDEAIRVEFFGDEIESIYYFDPLTNKKLQELHTITLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ + L A+K I++EL+ RL KE RL+E QRL+QR +DLEMLETTG+C+ Sbjct: 244 AANQFIVGQNRLAEAIKSIEKELEERLDYFLKENRLVEYQRLKQRTEFDLEMLETTGTCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+LTG+ PGE P +L +Y L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYSRHLTGKKPGETPYSLIDYFEAKGQPYLIIVDESHVSLPQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+FEE+ P + VSATPG ELE ++ EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFEEFINKAPHYLFVSATPGELELE-LSSVVAEQIIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE+ +R QVE ++DEI +G ++L+T LTK+MAEDL++Y + I+VRYMHSE+ Sbjct: 423 LVELAPSRHQVEILHDEIKKEIAKGNKVLVTTLTKKMAEDLSKYYADLGIKVRYMHSEID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER ++IR LR G+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 483 AIERNQLIRGLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 542 Query: 678 AARNVNSKVILYA-------------------DTITKSIQLAIDETTRRREKQLEHNKKH 718 AARN +V+++A D IT S+Q AI T RR+KQ NK H Sbjct: 543 AARNAEGRVLMFADKIEKRVTLESLEDLKAVEDKITGSMQRAIKTTIARRQKQDSFNKAH 602 Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778 I P++V ++ E + L+ +D L K+ + +K LRK MH AA L Sbjct: 603 GITPKTVSRRLDENLKSEDLDKLYEKRKKMD----KLPAKEKEKIIKELRKAMHEAAKKL 658 Query: 779 NFEEAARIRDEIKRLKS 795 FEEAAR+RDEI+++K+ Sbjct: 659 EFEEAARLRDEIEKIKA 675 >gi|33864613|ref|NP_896172.1| excinuclease ABC subunit B [Synechococcus sp. WH 8102] gi|81835180|sp|Q7UA24|UVRB_SYNPX RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33632136|emb|CAE06592.1| excinuclease ABC subunit B [Synechococcus sp. WH 8102] Length = 677 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/670 (52%), Positives = 457/670 (68%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + Y P GDQP AI QL++G++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 YDLTAPYTPKGDQPTAIKQLVQGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRSQLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ ED R+ +FG+++E I P TG+ ++++ET+ IY Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETVNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L++A+ I++EL+ RL L EG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKDRLDSAIGEIRQELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPKDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ VSATPG+WELE G + +Q+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELEVSGGEVAQQVIRPTGVLDPIVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++E Sbjct: 423 VRPTTGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V +LYAD +T+S+ AI ET RRR+ Q +N+KH I P + +K I L Sbjct: 543 HVEGVALLYADNMTESMAKAISETERRRKIQQTYNEKHGIVPTAAGKKASNSILSFLELS 602 Query: 741 AATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEAA 784 DA + ++ K +A + L +M AA L+FE+AA Sbjct: 603 RKLKQDGPDADLVQVAGKAAQALEEDPDAGLALEALPELIDQLEGKMKEAAKKLDFEDAA 662 Query: 785 RIRDEIKRLK 794 +RD IK+L+ Sbjct: 663 NLRDRIKQLR 672 >gi|268610256|ref|ZP_06143983.1| excinuclease ABC subunit B [Ruminococcus flavefaciens FD-1] Length = 652 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/653 (53%), Positives = 454/653 (69%), Gaps = 6/653 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P+GDQP AI +L++G+ S +K Q+LLGVTGSGKTFTMA VI + +P +V+A Sbjct: 4 FVLHSDYAPAGDQPQAIDKLVQGLESGKKEQILLGVTGSGKTFTMANVIARVNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQL SEF+ FFP NAVEYFVSYYDYYQPEAYVP TD+YIEK+SSIN++ID++RH Sbjct: 64 HNKILAAQLCSEFREFFPDNAVEYFVSYYDYYQPEAYVPSTDSYIEKDSSINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y M V ++ G + +L+ LVK +Y+R Sbjct: 124 SATTALAERRDVIIVASVSCIYSLGSPEEYRSMCVSIRQGAEKPRDQLIDELVKIRYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R FRV GD +EIFP+ D A RV FG++I+ ISE +TG+ V I+ Sbjct: 184 DIAFERNRFRVHGDVVEIFPAMSSDTAVRVEYFGDEIDRISEINVVTGEVKAVVSHAAIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV L A+ I EL R+ ++ +L+EAQR+EQR YD+EML G C Sbjct: 244 PASHYVVGDDKLEAALTEIDRELAERIDYFQQNNKLIEAQRIEQRTHYDMEMLREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR L GR G P TL ++ PED LL VDESHVT+PQ+ MY GD RK TL +Y Sbjct: 304 GVENYSRVLAGRPAGSTPQTLMDHFPEDFLLIVDESHVTLPQVRAMYAGDRARKTTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F+E+N I VSATPG E E+ IVEQ+IRPTGLVDP + Sbjct: 364 GFRLPSAMDNRPLNFDEFNDHIHQAIYVSATPGQIEREKTD-TIVEQVIRPTGLVDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ QV+D+ EIN + R+L+T LTK+MAEDLT Y ++VRY+H ++ T+E Sbjct: 423 VKPTTGQVDDLLSEINERTARNERVLVTTLTKKMAEDLTSYYENLGVKVRYLHHDIDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLR G FDVLVGINLLREGLDIPE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMEIIKDLRNGVFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD++T S++ AI ET RRR Q+ +N++H I P+++ I +V D + + Sbjct: 543 NAKGQVIMYADSVTGSMERAITETERRRGLQMAYNEEHGIVPKTI---IKDVRDVLEITS 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 A S +++S + K +A ++ L +M AA L FE AA +RD+I+ L Sbjct: 600 KAKVEKSTAKKKMSAADK--QALIEKLTAEMKNAAKMLEFEHAAYLRDKIREL 650 >gi|218283136|ref|ZP_03489215.1| hypothetical protein EUBIFOR_01801 [Eubacterium biforme DSM 3989] gi|218216085|gb|EEC89623.1| hypothetical protein EUBIFOR_01801 [Eubacterium biforme DSM 3989] Length = 657 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/655 (52%), Positives = 452/655 (69%), Gaps = 4/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI +L+ G+ +K Q+LLG TG+GKTFT++ VI + RP +V A Sbjct: 5 FELVSEYKPSGDQPEAIKELVSGLKEDKKFQVLLGATGTGKTFTISNVIAQVNRPTLVFA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFPHN VEYFVSY+DYYQPEAY+P+TDTYI+K + NE++D +R Sbjct: 65 HNKTLAGQLYSEFKEFFPHNRVEYFVSYFDYYQPEAYLPKTDTYIDKNTKTNEELDMLRM 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A S+LER D I+V+SV+ IYG + E Y MI L+ G +E+ EL+ +LV QQYKR Sbjct: 125 AAVNSVLERRDTIIVASVASIYGASNPEQYRHMIFTLRTGQIIERNELMLALVHQQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D +RGTFRV GD IEI P H + R+ MF +++E I E P+TG ++ + IY Sbjct: 185 DTDPLRGTFRVRGDVIEITPGHTDRYLIRIEMFDDEVERICEVDPVTGHVNQSYQLYIIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y T +N A I+EEL RL +++G+ LE +RLEQR YD+E L G C Sbjct: 245 PANGYATSMDIINHAADTIQEELDERLAYFDEQGKPLEKERLEQRCRYDIEALREFGVCP 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD RK L +Y Sbjct: 305 GIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKQVLVDY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF E+ L I VSATPG +EL+Q G IVEQIIRPTGL+DP VE Sbjct: 365 GFRLPSALDNRPLRFNEFEGLIKNAIFVSATPGDYELDQTHGEIVEQIIRPTGLLDPEVE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ DEI ++ R L+T LT RMAEDLT YL +++V ++H EV T+E Sbjct: 425 VRPIEGQIDDLVDEIKERIERHERTLITTLTVRMAEDLTSYLKNMDLKVAWLHHEVTTIE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR GK+DVLVGINLLREGLDIPE L+AILDADKEGFLRS+ SLIQ IGRAAR Sbjct: 485 RTEIIHDLRQGKYDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSRRSLIQIIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVI+YAD IT+S+Q A+DET RRR Q+E+N+KH I P+++ + I +V+ ++ Sbjct: 545 NAKGKVIMYADKITESMQEAMDETARRRSIQMEYNEKHGIVPKTIIKPIHDVVRSKETKE 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + +K +K L ++M AA L+FE AA++RD + +K Sbjct: 605 MAAKYLKKKKLPAKQKEKM----IKELEQEMKEAARTLDFERAAQLRDILFEMKG 655 >gi|78211635|ref|YP_380414.1| excinuclease ABC subunit B [Synechococcus sp. CC9605] gi|78196094|gb|ABB33859.1| excinuclease ABC, B subunit [Synechococcus sp. CC9605] Length = 702 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/670 (51%), Positives = 454/670 (67%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + Y P GDQP AI QL+KG++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 27 YDLTAPYSPKGDQPTAIEQLVKGVNGGERYQTLLGATGTGKTFTMANVIAKTGRPALVLA 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 87 HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 147 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQYSRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ ED R+ +FG+++E I P TG+ +++++ + IY Sbjct: 207 DTEIARGRFRMKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSMDAVNIY 265 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L++A+ I+ EL+ RL L EG+LLEAQRLEQR YDLEML G C Sbjct: 266 PAKHFVTPKDRLDSAISAIRSELRERLDVLNGEGKLLEAQRLEQRTKYDLEMLGQVGYCN 325 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 326 GVENYARHLAGREEGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 385 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ VSATPG+WE+E G + EQ+IRPTG++DP VE Sbjct: 386 GFRLPSAADNRPLKGEEFWDKAKQTVFVSATPGNWEMEVSGGEVAEQVIRPTGVLDPVVE 445 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E Sbjct: 446 VRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENDVRVRYLHSEIHSIE 505 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 506 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 565 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V +LYAD +T+S+ AI ET RRR Q +N+KH + P + +K I L Sbjct: 566 HVEGVALLYADNMTESMAKAISETERRRAIQQAYNEKHGVVPTAAGKKASNSILSFLELS 625 Query: 741 AATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEAA 784 DA + + K +A + L +M AA L+FEEAA Sbjct: 626 RKLKQDGPDADLVEVVGKAAQALENDPDAGLALEALPELIDQLEAKMKEAAKKLDFEEAA 685 Query: 785 RIRDEIKRLK 794 +RD +K+L+ Sbjct: 686 NLRDRVKQLR 695 >gi|260664164|ref|ZP_05865017.1| excinuclease ABC, B subunit [Lactobacillus jensenii SJ-7A-US] gi|260562050|gb|EEX28019.1| excinuclease ABC, B subunit [Lactobacillus jensenii SJ-7A-US] Length = 681 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/659 (51%), Positives = 462/659 (70%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQ AI +L G + K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +L+ERND +VV+SVSCIYG+G Y+ ++ L G ++ LL LV QY R Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+RV FG++I+ I E LTG+ I + + ++ Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVIGERDQVSLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD RK TL +Y Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL + G IVEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-GKIVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+ DLR G FDVL+GINLLREG+D+PE LVAILDADKEGFLRS LIQT+GRAAR Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N + VI+YAD IT S+++AIDET RRREKQ+ NK+H I P+++ + I +VI P+ Sbjct: 549 NSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIVKPIRDVISITKPVK 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E + ++ + L+KK+ + +K+L +QM AA L+FE AA +RD I L++S Sbjct: 609 EEKEKESFAELNFDE--LTKKQKQTMIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNS 665 >gi|238854877|ref|ZP_04645207.1| excinuclease ABC subunit B [Lactobacillus jensenii 269-3] gi|282931589|ref|ZP_06337082.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1] gi|238832667|gb|EEQ24974.1| excinuclease ABC subunit B [Lactobacillus jensenii 269-3] gi|281304200|gb|EFA96309.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1] Length = 681 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/659 (51%), Positives = 462/659 (70%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQ AI +L G + K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +L+ERND +VV+SVSCIYG+G Y+ ++ L G ++ LL L+ QY R Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRDLINIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+RV FG++I+ I E LTG+ I + + ++ Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVIGERDQVSLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+ G Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD RK TL +Y Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ EE+ + VSATPG +EL + G IVEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-GKIVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+ DLR G FDVL+GINLLREG+D+PE LVAILDADKEGFLRS LIQT+GRAAR Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N + VI+YAD IT S+++AIDET RRREKQ+ NK+H I P+++ + I +VI P+ Sbjct: 549 NSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIVKPIRDVISITKPVK 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E + ++ + L+KK+ + +K+L +QM AA L+FE AA +RD I L++S Sbjct: 609 EEKEKESFAELNFDE--LTKKQKQTMIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNS 665 >gi|220912566|ref|YP_002487875.1| excinuclease ABC subunit B [Arthrobacter chlorophenolicus A6] gi|254764900|sp|B8H7K6|UVRB_ARTCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|219859444|gb|ACL39786.1| excinuclease ABC, B subunit [Arthrobacter chlorophenolicus A6] Length = 704 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/686 (50%), Positives = 467/686 (68%), Gaps = 39/686 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAIA L + I++ EK +LLG TG+GK+ T A +IE +QRP +VM Sbjct: 14 FEVISEFKPAGDQPAAIADLTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SSINE+++R+RH Sbjct: 74 QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSINEEVERLRH 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV++VSCIYG+G+ E Y +V L+ G + + +LL V QY R Sbjct: 134 SATNALLTRRDVVVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDDLLRKFVSMQYARN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EI P + E++A R+ FG++IE I +PLTGQ I++ E + ++ Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIQTLHPLTGQIIQDEEEMYVF 252 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV ++ A+K I++EL RL LE + +L+EAQRL R TYDLEM++ G C Sbjct: 253 PASHYVAGPERMSRAIKRIEDELAERLQVLESQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G P L +Y P+D LL +DESHVT+PQI MY GD RK L ++ Sbjct: 313 GIENYSSHIDGRARGTAPHCLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVDF 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL + G V+QIIRPTGL+DP V Sbjct: 373 GFRLPSAMDNRPLKWDEFLERVGQTVYLSATPGKYELGKADGF-VQQIIRPTGLIDPEVV 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI ++ R+L+T LTKRMAEDLT+YL ++V Y+HS+V TL Sbjct: 432 VKPTKGQIDDLLGEIRTRTERNERVLVTTLTKRMAEDLTDYLLGHGVKVEYLHSDVDTLR 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR+G FDVLVGINLLREGLD+PE LV+ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 492 RVELLRELRMGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD IT S+ AIDET RRR Q+ +N +H I+PQ +++KI ++ D + ED Sbjct: 552 NVSGQVHMYADRITDSMAQAIDETNRRRAIQVAYNTEHGIDPQPLRKKIADITDQLAKED 611 Query: 741 AATTNISIDAQQLSLSKKKGK--------------------------------AHLKSLR 768 A T DA S KGK + L Sbjct: 612 ADT-----DALLGSFDYGKGKRGITGANKPGAKKAAAQVRADGLAAAPAEDLVGMIAQLT 666 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH AA L FE AARIRDE+ LK Sbjct: 667 EQMHGAAAELQFEVAARIRDEVSELK 692 >gi|148827044|ref|YP_001291797.1| excinuclease ABC subunit B [Haemophilus influenzae PittGG] gi|148718286|gb|ABQ99413.1| excinuclease ABC subunit B [Haemophilus influenzae PittGG] Length = 612 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/609 (55%), Positives = 444/609 (72%), Gaps = 15/609 (2%) Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR SA Sbjct: 5 KTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSA 64 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 T+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R D Sbjct: 65 TKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQ 124 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 125 AFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYPK 184 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C I Sbjct: 185 THYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGI 244 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 ENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK TL EYGF Sbjct: 245 ENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGF 304 Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562 RLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+DP +EIR Sbjct: 305 RLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIEIR 364 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 QV+D+ E A + R+L+T LTK+MAEDLT+YL E IRVRY+HS++ T+ER+ Sbjct: 365 PVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERV 424 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIRDLRLG+FDVLVGINLLREGLDIPE +VAILDADKEGFLRS+ SLIQTIGRAARN+ Sbjct: 425 EIIRDLRLGEFDVLVGINLLREGLDIPEVSIVAILDADKEGFLRSERSLIQTIGRAARNL 484 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D + A Sbjct: 485 NGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQGA 541 Query: 743 TTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + Q+ ++ K+ + +K L +QM+ A +L FE+AA IRD++ Sbjct: 542 NQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQL 601 Query: 791 KRLKSSPYF 799 +L+ F Sbjct: 602 HQLREQFVF 610 >gi|302671953|ref|YP_003831913.1| excinuclease ABC B subunit UvrB [Butyrivibrio proteoclasticus B316] gi|302396426|gb|ADL35331.1| excinuclease ABC B subunit UvrB [Butyrivibrio proteoclasticus B316] Length = 663 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/654 (52%), Positives = 459/654 (70%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L++G + + + LLGVTGSGKTFTMA VI+A+Q+P ++++ Sbjct: 3 FKIHSEYKPTGDQPKAIKDLVEGFKAGNQFETLLGVTGSGKTFTMANVIQALQKPTLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+IN++ID++R Sbjct: 63 HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINDEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D IVV+SVSCIYG+GS E + M + L+ G + ++ E + LV QY R Sbjct: 123 SATASLAERKDVIVVASVSCIYGLGSPEEFKGMSISLRPGMNKDRDETIKELVAIQYNRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + R FRV GD+IEIFP++ +D RV FG++I+ I E P+T + + + IY Sbjct: 183 DLELSRCNFRVRGDTIEIFPANADDYLIRVEFFGDEIDRICEIEPVTAKVRSELSHVMIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P+ +N A I++EL+ ++ + E RL+EAQR+ +R +D+EM+ TG C Sbjct: 243 PASHYVVPQEKINMACDNIEKELEEQIRFFKGEDRLIEAQRISERTNFDVEMMRETGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L PGEPP TL ++ D L+ VDESH+TIPQI MY GD RK TL +Y Sbjct: 303 GIENYSRHLNFMKPGEPPLTLLDFFDRDFLIIVDESHMTIPQIGAMYHGDRSRKLTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + SATPG +E E+ + + EQ+IRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLNFEEFEEHIDQMLFCSATPGKYE-EEHELLRTEQVIRPTGLLDPEIS 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + ++L+T LTKRMAEDLTEYL E IRV+Y+HS++ TLE Sbjct: 422 VRPVEGQIDDLIGEIRTEVDKKNKVLVTTLTKRMAEDLTEYLAESGIRVKYLHSDIDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAI+DADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RSEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAIIDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD +T S+Q AIDET RRR Q E+NK+H I PQ++K+ + ++I + + Sbjct: 542 NAEGRVIMYADNMTDSMQKAIDETKRRRAIQEEYNKEHGITPQTIKKAVRDLI--AVTKA 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + S+ + + + + ++K+M AA L+FE AA +RD++ LK Sbjct: 600 VTKEEFKFEKDPESMDQAELEKLIGDVQKKMKRAATELDFETAATLRDQMIELK 653 >gi|317132478|ref|YP_004091792.1| excinuclease ABC, B subunit [Ethanoligenens harbinense YUAN-3] gi|315470457|gb|ADU27061.1| excinuclease ABC, B subunit [Ethanoligenens harbinense YUAN-3] Length = 670 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/656 (52%), Positives = 457/656 (69%), Gaps = 8/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAI QL G+ ++ Q LLGVTGSGKTFTMA +I + RP +V+A Sbjct: 4 FHLVSPYQPTGDQPAAIKQLADGVLRGDRAQTLLGVTGSGKTFTMANIIAKVNRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH Sbjct: 64 HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D ++V+SVSCIY +G Y M++ L+ G ++ E+L LV QY+R Sbjct: 124 SATSALSERRDVVIVASVSCIYNLGDPIDYRNMVISLRPGMQRDRDEVLKKLVSLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +R FRV GD +E+FP++ + A R+ FG+++E I+E +TG+ + + IY Sbjct: 184 DVNFVRNKFRVRGDVVEVFPAYSGENAVRIEFFGDEVERITEISTVTGEVKGMLGHVAIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ P + A+ +++E+ R+ +LLEAQR+EQR YD+EML G C Sbjct: 244 PASHYIVPEEKMLPALDDLEQEMVERVKWFRAHDKLLEAQRIEQRTKYDIEMLREIGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L R PG P TL +Y P+D LLFVDESHVT+PQ+ GM GD RK TL +Y Sbjct: 304 GIENYSRVLLRRPPGATPFTLLDYFPDDYLLFVDESHVTLPQVRGMSAGDRARKQTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +E E+ IVEQ+IRPTGLVDP V+ Sbjct: 364 GFRLPSALDNRPLNFEEFLRHVNQAVFVSATPGDFEREES-AQIVEQVIRPTGLVDPEVQ 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EINL ++ R+L+T LTK+MAEDLT Y ++VRYMH +++ +E Sbjct: 423 VRPTDGQIDDLLSEINLRVERHERVLVTTLTKKMAEDLTRYFDGMGVKVRYMHHDIEAIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLG FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSL+QTIGRAAR Sbjct: 483 RMQIIRDLRLGGFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLVQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VILYADT+T S++ AI ET RRR Q ++N+ H I P+++ + + ++I + Sbjct: 543 NANGLVILYADTVTPSMERAISETERRRAIQTQYNEAHGITPKTIVKDVRDII------E 596 Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + + D + L K + ++ L +M AA L FE+AA +RD+IK L+ Sbjct: 597 ISSKDDTQDRKSFKKLPKPERDKIIRKLSVEMKEAARMLEFEQAAFLRDKIKELRG 652 >gi|325294874|ref|YP_004281388.1| UvrABC system protein B [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065322|gb|ADY73329.1| UvrABC system protein B [Desulfurobacterium thermolithotrophum DSM 11699] Length = 661 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/656 (53%), Positives = 463/656 (70%), Gaps = 7/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQP AI +L +GI K Q LLG+TGSGKT+T+AKVIE +Q+P +V++ Sbjct: 5 FKVVSPFKPKGDQPKAIKELSEGIKKGLKYQTLLGITGSGKTYTIAKVIEEVQKPTLVIS 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK+LAAQLY E KNFFP NAVEYF+SYYDYYQPE+Y+P D YIEK+ SIN IDRMRH Sbjct: 65 HNKVLAAQLYHELKNFFPENAVEYFISYYDYYQPESYIPSRDLYIEKDCSINPVIDRMRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVVSSVSCIYG+GS + Y + ++ ++G+ +E+ E++ LV Y+R Sbjct: 125 SATVSLLTRQDVIVVSSVSCIYGLGSPDYYKTLSLRFQVGEEIERDEVIRKLVTLGYERS 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G F+V GD I+IFP+ +ED RV +FG++++ I + ++ + +Y Sbjct: 185 EYELKPGIFKVRGDVIDIFPADVEDHFVRVELFGDEVDSIVMLDYFNQKVLKEFNSYTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY TP + A++ I++EL+ R+ +EG+ LEA+R+EQR YD+E+L G C+ Sbjct: 245 PASHYATPYSKIVEAVQSIEKELEERVKYFLREGKELEARRIEQRTKYDIELLLEIGHCK 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL Y P+D L+ +DESHVT+PQI M+RGD RK L E+ Sbjct: 305 GIENYSRHLDGRKPGEPPFTLLNYFPDDFLVVIDESHVTVPQIKAMWRGDRARKYNLIEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ P I VSATPG +ELE + +VEQIIRPTGL+DP VE Sbjct: 365 GFRLPSAYDNRPLNFEEFLKRVPQAIFVSATPGPFELEVSEK-VVEQIIRPTGLLDPIVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++ + EI ++ RIL+T LTK+ AE+L++YL E+ I+ +YMHSE+ ++E Sbjct: 424 VRKTEGQIDHLISEIKKRVEKNERILITTLTKKSAEELSKYLLEKGIKAKYMHSEIDSVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR LR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS TSLIQTIGRAAR Sbjct: 484 RVEIIRGLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KVILYAD IT S++ AI+ET RRR+ Q E+NKK+ I PQ+VK ++ +LED Sbjct: 544 NVNGKVILYADKITPSMKKAIEETERRRKIQKEYNKKYGITPQTVK----RALETSILED 599 Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A ++ + K + + + L K+M AA N FE AA +RD+IK L+ Sbjct: 600 AGIMPFYKKEERENTPKTEEELLKEIARLEKEMKEAAKNWEFERAAELRDKIKELQ 655 >gi|256842752|ref|ZP_05548240.1| excinuclease ABC, B subunit [Lactobacillus crispatus 125-2-CHN] gi|256614172|gb|EEU19373.1| excinuclease ABC, B subunit [Lactobacillus crispatus 125-2-CHN] Length = 681 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/659 (50%), Positives = 468/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND +VV+SVSCIYG+G + Y++ ++ + G+ ++ LL LV QY R Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI T RRR+ Q+E NK+H I P+++ + I +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + + + D L+ K+ K + +L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666 >gi|163752829|ref|ZP_02159953.1| excinuclease ABC subunit B [Kordia algicida OT-1] gi|161326561|gb|EDP97886.1| excinuclease ABC subunit B [Kordia algicida OT-1] Length = 662 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/658 (51%), Positives = 463/658 (70%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI QL+ GI + E+ Q LLGVTGSGKTFT+A VIE +++P +++A Sbjct: 3 FKIISDFSPTGDQPQAIEQLVSGIKANEQYQTLLGVTGSGKTFTVANVIEKVEKPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IV++SVSC+YGIG+ + + +++L+ + + +LL LV+ Y R Sbjct: 123 STTSSLLSGRRDVIVIASVSCLYGIGNPIEFQKNVIKLQRDQVISRTKLLHRLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + + G+FRV GD ++I+P + D A+R+ FG++IEEI F P T + + I Sbjct: 183 TEADFLHGSFRVKGDVVDIYPGY-ADFAFRIHFFGDEIEEIESFDPATNTVLEKYTQLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+E++ ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPEVLQNAIHQIQEDMVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTI Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPDDYLMVVDESHVTISQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ I VSATP +EL + G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMIQNQVIYVSATPADYELHKTDGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI+ ++ R+L+T LTKRMAE+LT+YL IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLVEEIHQRTEKDERVLVTTLTKRMAEELTKYLSRIQIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVQIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736 RNVN K I+YAD ITKS+Q IDETT RREKQ+E+N +HNI P+ + + + + + + Sbjct: 542 RNVNGKAIMYADKITKSMQKTIDETTYRREKQIEYNTQHNITPKGLNKSLNNALSKDESL 601 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ED T + + LSK + + ++ RK M AA LNF +AA+ RDEIK L+ Sbjct: 602 AWEDEIETKKAAEPDLEYLSKAQIEKLIREKRKAMETAAKELNFMDAAKYRDEIKLLQ 659 >gi|91774217|ref|YP_566909.1| excinuclease ABC subunit B [Methanococcoides burtonii DSM 6242] gi|121691546|sp|Q12TR7|UVRB_METBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|91713232|gb|ABE53159.1| Excinuclease ABC, B subunit [Methanococcoides burtonii DSM 6242] Length = 660 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/668 (53%), Positives = 470/668 (70%), Gaps = 26/668 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI +L +G++ K Q+LLGVTGSGKTFT+A VI+ +Q+P +V+A Sbjct: 4 FELVSDYEPKGDQPEAIRKLSEGLNKGLKHQVLLGVTGSGKTFTVANVIQNVQKPTLVIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+SS+NE+IDR+R Sbjct: 64 HNKTLAAQLFSEFREFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDSSVNEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D IVVSSVS IY IGS + + +M V L+ GD V + +L ++L+ Y+R Sbjct: 124 SATKSLIERKDVIVVSSVSSIYNIGSPDEWRRMSVILRTGDEVGRSDLFAALINIHYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE---TI 377 DI +G+FR GD+IE+FP+ ++ R+ +FG++I+ IS F P+TG+ I V+ +I Sbjct: 184 DIESAKGSFRSKGDTIEVFPAQ-DNHGVRIELFGDEIDRISSFDPVTGKTIDEVKEDNSI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+V P+ + A+ I++EL+ ++ +L E R+LE+QRL QR +DLEM+ G Sbjct: 243 VIYPAKHFVMPQEEMVKALGSIEKELEGQVAKLVSENRILESQRLTQRAKFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+ GR PG+PP +L E+ P+D LL +DESHVTIPQI GM+ GD RK L Sbjct: 303 YCSGIENYSRHFDGRKPGDPPSSLLEFFPDDFLLVIDESHVTIPQIRGMHNGDRARKEAL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 YGFRLPS DNRPL + E++ I VSATP +EL +VEQIIRPTGLVDP Sbjct: 363 INYGFRLPSAYDNRPLTYNEFHHKINQAIYVSATPADYEL-GISSAVVEQIIRPTGLVDP 421 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 V IR Q++D+ E+N ++G R L+T LTKRMAEDLTEYL E IRVRYMHS++ Sbjct: 422 VVFIRPVENQIDDLIGEVNKVTEKGYRTLVTTLTKRMAEDLTEYLLEMGIRVRYMHSDID 481 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER EIIRDLR G FDVLVGINLLREGLDIPE VAILDADKEGFLRS+ SLIQT+GR Sbjct: 482 TLERAEIIRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQTMGR 541 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM------- 730 A+RN + VILYA +T SI+ A+ ET RRR+ QL +N+KH I PQ++ + + Sbjct: 542 ASRNADGYVILYAGKVTGSIEAALRETNRRRQIQLAYNEKHGIVPQTIHKALQRELVETE 601 Query: 731 --EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 EV+ +L ++ D + ++ + L +MHLAA NL FE AA +RD Sbjct: 602 YGEVVSEVL-------GVAEDLSDIEIADM-----VIELEAEMHLAAKNLEFERAAALRD 649 Query: 789 EIKRLKSS 796 IK L+S+ Sbjct: 650 NIKELRST 657 >gi|302873269|ref|YP_003841902.1| excinuclease ABC, B subunit [Clostridium cellulovorans 743B] gi|307688564|ref|ZP_07631010.1| excinuclease ABC subunit B [Clostridium cellulovorans 743B] gi|302576126|gb|ADL50138.1| excinuclease ABC, B subunit [Clostridium cellulovorans 743B] Length = 658 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/655 (51%), Positives = 465/655 (70%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI + + + + +K Q LLGVTGSGKTFTMA +IE +Q+P +V+A Sbjct: 4 FKIVSEYKPTGDQPQAIESISERVLAGDKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP AVEYFVSYYDYYQPEAYV +TDT+IEK++SIN++IDR+RH Sbjct: 64 HNKTLAAQLCSEFREFFPDAAVEYFVSYYDYYQPEAYVAQTDTFIEKDASINDEIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G ++ E++ L+ QY+R Sbjct: 124 SATAALFERKDVIIVASVSCIYGLGNPDEYRKLSLSLRKGMEKDRDEIMRKLIDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +R TFRV GD ++IFP+ + V +V FG +I+ I EF LTGQ +R ++ + I+ Sbjct: 184 DINFVRATFRVRGDILDIFPASSQKVGIKVEFFGEEIDRIREFDVLTGQILRELKHVLIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ + + T+ ++ I+ EL R+ EL E +LLEAQRL+QR +D+EM+ G CQ Sbjct: 244 PASHFASSKETVERSIGKIEAELDERVKELLAEEKLLEAQRLKQRTNFDIEMIREMGYCQ 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + GRN GEPP TL ++ PED L+F+DESHVT+PQ+ MY GD RK L Y Sbjct: 304 GIENYSRIMDGRNKGEPPKTLIDFFPEDFLMFIDESHVTLPQVRAMYGGDRSRKEALVNY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+FEE+ + VSATP +E + + EQIIRPTGL+DP +E Sbjct: 364 GFRLPCAYDNRPLKFEEFEEKLKQVVFVSATPAKYEFDHSTN-VAEQIIRPTGLLDPIIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+Y I +G RIL+T LTK+MAEDLT+YL E ++ Y+HS+V T++ Sbjct: 423 VRPIDGQIDDLYSSIQETIVRGFRILVTTLTKKMAEDLTDYLKEMGVKTNYLHSDVTTID 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II++LR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS TSLIQT+GRAAR Sbjct: 483 RMKIIKELRMGDFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSNTSLIQTVGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +SKVI+YAD IT S+ I ET RRR+ Q+++N+ HNI P ++ + I + I + + Sbjct: 543 NADSKVIMYADKITDSMSYTIKETERRRKIQIDYNEAHNITPTTIIKGIRDNIQISTIAE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ + ++S++ K + SL K+M A L FE AA +RDEI +LK+ Sbjct: 603 EEAVYLT----EETMSQEDLKKKIASLEKEMKAVAKELQFERAAELRDEINKLKT 653 >gi|284049853|ref|ZP_06380063.1| excinuclease ABC subunit B [Arthrospira platensis str. Paraca] gi|291569150|dbj|BAI91422.1| excinuclease ABC subunit B [Arthrospira platensis NIES-39] Length = 665 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/659 (53%), Positives = 459/659 (69%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AIAQL+ I S LLG TG+GKTFT+A I + RP +V+A Sbjct: 4 FELKAPFQPTGDQPLAIAQLINSIKSGHPKTTLLGATGTGKTFTIAATIAQLGRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + L++G+ +Q++LL L QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPTEYLNAAIPLRVGEDRDQRQLLRDLASIQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ ++++ET+ IY Sbjct: 184 DTEITRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEVLQSLETLNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L+ A I ELK +L ELEK G+L EAQRL+QR YDLEML G C Sbjct: 243 PARHFVTPGDRLDAACDAIAAELKQQLAELEKAGKLWEAQRLDQRTRYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR PG PP L +Y P+D LL VDESHVT+PQI MY GD RK L E+ Sbjct: 303 GVENYSRHLAGRLPGSPPECLVDYFPDDWLLVVDESHVTVPQIRAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I+VSATPG WE+ Q QG ++EQ+IRPTG+VDP + Sbjct: 363 GFRLPSAADNRPLKSEEFWQKVKQCILVSATPGDWEIAQSQGQVIEQVIRPTGVVDPEIF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + R+L+T LTKRMAEDLTEY +R IRVRY+HSE+++++ Sbjct: 423 VRPTTGQVDDLIAEIKERIPRNERVLVTTLTKRMAEDLTEYFQDRGIRVRYLHSEIQSIQ 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+ L+ G+FDVL+G+NLLREGLD+P+ LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQSLQEGEFDVLIGVNLLREGLDLPQVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V + ILYAD +T S+ AI ET RRR QLE+N+K+ I P+S+ + I L D Sbjct: 543 HVRGQAILYADNMTDSMSKAIAETNRRRTIQLEYNQKYGIIPKSIVKSSSNAILAFL--D 600 Query: 741 AA----TTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + I + QQ+ L ++ ++ L +M+ AA L FEEAA+ RD I+ L+ Sbjct: 601 VSRRLNSQQIDLACQQVDDLPLEEIPTLIEQLEVRMNEAAQQLEFEEAAKFRDRIRILR 659 >gi|256371800|ref|YP_003109624.1| excinuclease ABC, B subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008384|gb|ACU53951.1| excinuclease ABC, B subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 667 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/658 (52%), Positives = 461/658 (70%), Gaps = 6/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y PSGDQP AI +L+ I S + LLG+TGSGK+ T+A IE +QRP +V+A Sbjct: 5 FEVHAPYRPSGDQPRAIDELVTSIESGNRFTTLLGITGSGKSATIAWTIERLQRPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ F P N VEYFVSYYDYYQPEAY+P +DTYIEK+SSIN++IDR+RH Sbjct: 65 PNKSLAAQLANEFRGFMPRNRVEYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDRLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+GS +Y I+ +++G ++ LV QY+R Sbjct: 125 SATSALLTRRDVVVVASVSCIYGLGSPSAYEGQILPIEVGMDQPMGLVVRRLVAMQYQRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +E+ P++ E + RV FG+++E I TG+ +R +E I ++ Sbjct: 185 DLELARGRFRVRGDVLEVHPAYEERIV-RVEFFGDEVERIVSVDQTTGEVLRELEDIVLF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY+ + A++ I +EL RL ELE G+LLEAQRL R DLEML+ G C Sbjct: 244 PATHYLASPEVVERALRSISDELGERLRELESAGKLLEAQRLRMRTELDLEMLQEVGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PG+ P TL +Y P+D L+ +DESHV +PQ+ Y GD RK TL E+ Sbjct: 304 GIENYSRHLDGREPGQAPYTLLDYFPKDFLVVIDESHVGLPQLRAQYAGDRSRKETLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF+E+ P I +SATPG +E E G VE I+RPTGL+DP VE Sbjct: 364 GFRLPSALDNRPLRFDEFLERVPQAIFMSATPGPFEREHA-GRTVELIVRPTGLLDPKVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI ++ R+L+T LTKRMAEDLTEY +RVRY+HS ++TLE Sbjct: 423 VRPTKGQIDDLLAEIRARVERDQRVLVTTLTKRMAEDLTEYFEGLGVRVRYLHSTIETLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG FDVLVGINLLREGLD+PE GLVAI+DADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RIEIVRDLRLGVFDVLVGINLLREGLDLPEVGLVAIMDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV VILYAD +T S+ AI ET RRR Q ++N +H I P+SV +I +++ Sbjct: 543 NVEGTVILYADAVTPSMARAISETERRRSIQADYNARHGITPRSVSARIDDLVTE-RTRS 601 Query: 741 AATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A T + +I+ + ++ ++ + + SLR++M AA L FEEAA++RD+I+ L++ Sbjct: 602 APTPTLGRRAIEERTAGMNPEQVRDVIDSLREEMERAATELRFEEAAKLRDDIRALEA 659 >gi|116327526|ref|YP_797246.1| excinuclease ABC subunit B [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331861|ref|YP_801579.1| excinuclease ABC subunit B [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280403|sp|Q04QJ9|UVRB_LEPBJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|122284674|sp|Q054D2|UVRB_LEPBL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|116120270|gb|ABJ78313.1| Helicase subunit of the DNA excision repair complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125550|gb|ABJ76821.1| Helicase subunit of the DNA excision repair complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 666 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/662 (52%), Positives = 458/662 (69%), Gaps = 20/662 (3%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F++ + Y P+GDQ AI + + L+GVTGSGKTFTMA+VI+ + P +V Sbjct: 3 SIFKIHSAYKPAGDQIKAIENIADSFQKGAEKVTLVGVTGSGKTFTMAQVIQNLGLPTLV 62 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 ++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE+ID++ Sbjct: 63 LSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKL 122 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT SLLER D ++VSSVSCIYG+GS E Y+ +V LK GD++E+ ++ L+ QY Sbjct: 123 RLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVALKTGDTIERDAVIRKLLHIQYN 182 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI RG FRV GDSIEI+P++ D R+ FG++I+ IS P+T Q I +E Sbjct: 183 RNDIDFSRGNFRVRGDSIEIYPAYHTD-GIRIEFFGDEIDSISRINPITAQTILKLEKTY 241 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY H++T P + A++ IK EL+ + + K +LLEA+R+ R YD+EML+ G Sbjct: 242 IYPAKHFITSGPKVKVAIENIKAELEAQALFFRKNDKLLEAERIISRTNYDMEMLQEMGY 301 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+LTGR GE P L +Y + LL VDESHVTIPQI GM+ GD RK TL Sbjct: 302 CNGIENYSRHLTGRKAGERPACLIDYFQGEFLLIVDESHVTIPQIGGMFAGDKARKQTLV 361 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL FEE+ L P T+ VSATP +E+E+ +VEQIIRPTGL+DP Sbjct: 362 DFGFRLPSALDNRPLNFEEFETLTPKTLYVSATPADYEMEKSSK-VVEQIIRPTGLLDPI 420 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+RS + Q+ED+ EI G RIL+T LTK+M+EDLT+Y E ++V Y+HSEV+T Sbjct: 421 VEVRSTKNQIEDLLVEIRKRIDVGERILITTLTKKMSEDLTDYYKEIGLQVAYLHSEVET 480 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+R+ IIRDLR G +DVL+GINLLREGLDIPE LVAILDADKEGFLR+ SLIQT+GRA Sbjct: 481 LDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA 540 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733 ARNVN ILYAD IT S+ AIDET RRR+ Q +HN K I P ++++++ ++I Sbjct: 541 ARNVNGTAILYADKITDSMAKAIDETKRRRKIQEDHNLKFGITPLTIRKEVNDIIEREEK 600 Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRD 788 + ++LED ++ + K K LK LR++M AA L+FE AA +RD Sbjct: 601 KRTSEDLVLEDV--------EKKFNSKKFPNKEVLKDKLREEMMKAAKELDFERAAILRD 652 Query: 789 EI 790 ++ Sbjct: 653 KM 654 >gi|326331625|ref|ZP_08197913.1| excinuclease ABC subunit B [Nocardioidaceae bacterium Broad-1] gi|325950424|gb|EGD42476.1| excinuclease ABC subunit B [Nocardioidaceae bacterium Broad-1] Length = 708 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/695 (49%), Positives = 467/695 (67%), Gaps = 32/695 (4%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + + + + F++ +DY PSGDQPAAIA++ K I K +LLG TG+GKT T+A E Sbjct: 4 VTDLERRVAPFKVVSDYQPSGDQPAAIAEITKRIQDGVKDVVLLGATGTGKTATVAWTAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +V+ PNK LAAQ +E + FP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS Sbjct: 64 QLQRPMLVLQPNKTLAAQFANELRQLFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INE+++R+RHSAT SLL R D IVVS+VSCIYG+G+ + Y +++L++G+ ++ +L Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMIRLRVGEEHDRDSILR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV+ QY R D+ RGTFRV GD++EIFP + E+ A R+ FG++IE + + +TG+ Sbjct: 184 RLVEIQYTRNDLSFTRGTFRVRGDTLEIFPVY-EEHAVRIEFFGDEIERLMTLHAVTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + + ++ +HYV + A+ I+ EL +L EK+G++LEAQRL R TYD+ Sbjct: 243 LTEDQELYVFPATHYVAGPERMERAINGIEAELDQQLSTFEKQGKMLEAQRLRMRTTYDI 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+ GSC IENYS ++ GR G P L +Y PED +L VDESHV +PQ+ GMY GD Sbjct: 303 EMMRQVGSCSGIENYSMHIDGRERGSAPNCLLDYFPEDFVLVVDESHVAVPQVGGMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L E+GFRLPS DNRPL++EE+ TI +SATPG +EL++ G VEQIIR Sbjct: 363 MSRKRNLVEHGFRLPSAQDNRPLKWEEFLERIGQTIYLSATPGDYELDKVGGDTVEQIIR 422 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V I+ + Q++D+ EIN + R+L+T LTK+M+EDLT+YL + IR R Sbjct: 423 PTGLIDPEVIIKPTKGQIDDLIGEINDRVAKNERVLVTTLTKKMSEDLTDYLLDAGIRTR 482 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL+RIE++RDLRLG++DVLVGINLLREGLD+PE LV+ILDADKEGFLRS S Sbjct: 483 YLHSEVDTLKRIELLRDLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKS 542 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRR Q+ +N+ + I+PQ +++KI Sbjct: 543 LIQTIGRAARNVSGQVHMYADKITPSMESAIEETNRRRAIQMAYNEANGIDPQPLRKKIA 602 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS------------------------ 766 ++ D + ED +T + + GK K+ Sbjct: 603 DITDMLAREDESTQELLNTWAGTEAKGRAGKTSAKAPTPMLGDAAREARERGLVGLPSSD 662 Query: 767 -------LRKQMHLAADNLNFEEAARIRDEIKRLK 794 L QM AA L FE AAR+RDEI LK Sbjct: 663 LAQLIGDLTDQMKGAAAELQFEVAARLRDEISELK 697 >gi|302380398|ref|ZP_07268867.1| excinuclease ABC, B subunit [Finegoldia magna ACS-171-V-Col3] gi|302311802|gb|EFK93814.1| excinuclease ABC, B subunit [Finegoldia magna ACS-171-V-Col3] Length = 617 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/614 (53%), Positives = 446/614 (72%), Gaps = 4/614 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L G+ + + Q+L GVTGSGKTFTMA +I+ +QRP +V+A Sbjct: 3 FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH Sbjct: 63 HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+VSSVSCIYG+G Y +++ L+ G ++ E++ L+ QY R Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS++IFP+ + + R+ FG++I+ I+E LTG+ + + IY Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + + A+ I+EEL+ RL + +LLEAQRLEQR YD+EML+ G C Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRLKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+++ R PG P TL +Y P+D + +DESHVT+PQI GMY GD RK +L +Y Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + I VSATPG +E + +VEQ+IRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLKFSEFESMMNQVIYVSATPGKYEKAKTNE-VVEQVIRPTGLLDPKIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLR GK+DVLVGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+Y DTIT+S+ +AI ET RRRE Q E+NK+HNI P ++ + + + I + Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQEEYNKEHNITPTTINKSVRKRIQNTFV-- 599 Query: 741 AATTNISIDAQQLS 754 A N + DA +++ Sbjct: 600 -AEENENYDANKVT 612 >gi|227877198|ref|ZP_03995272.1| excinuclease ABC subunit B [Lactobacillus crispatus JV-V01] gi|256848938|ref|ZP_05554372.1| excinuclease ABC subunit B [Lactobacillus crispatus MV-1A-US] gi|262045719|ref|ZP_06018683.1| excinuclease ABC, B subunit [Lactobacillus crispatus MV-3A-US] gi|312977728|ref|ZP_07789475.1| excinuclease ABC subunit B [Lactobacillus crispatus CTV-05] gi|227863252|gb|EEJ70697.1| excinuclease ABC subunit B [Lactobacillus crispatus JV-V01] gi|256714477|gb|EEU29464.1| excinuclease ABC subunit B [Lactobacillus crispatus MV-1A-US] gi|260573678|gb|EEX30234.1| excinuclease ABC, B subunit [Lactobacillus crispatus MV-3A-US] gi|310895467|gb|EFQ44534.1| excinuclease ABC subunit B [Lactobacillus crispatus CTV-05] Length = 676 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/659 (50%), Positives = 467/659 (70%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND +VV+SVSCIYG+G + Y++ ++ + G+ ++ LL LV QY R Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GR AR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRTAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI T RRR+ Q+E NK+H I P+++ + I +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + + + D L+ K+ K + +L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666 >gi|295692552|ref|YP_003601162.1| uvrABC system protein b [Lactobacillus crispatus ST1] gi|295030658|emb|CBL50137.1| UvrABC system protein B [Lactobacillus crispatus ST1] Length = 681 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/659 (50%), Positives = 468/659 (71%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND +VV+SVSCIYG+G + Y++ ++ + G+ ++ LL LV QY R Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ + A+R+ FG++I+ I E LTG+ I ++I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERDSISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI T RRR+ Q+E NK+H I P+++ + I +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + + + D L+ K+ K + +L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666 >gi|148238416|ref|YP_001223803.1| excinuclease ABC subunit B [Synechococcus sp. WH 7803] gi|189038007|sp|A5GHU1|UVRB_SYNPW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|147846955|emb|CAK22506.1| Helicase subunit of the DNA excision repair complex [Synechococcus sp. WH 7803] Length = 678 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/669 (52%), Positives = 455/669 (68%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P GDQP AI QL+ G++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 FDLTAPYSPKGDQPTAIKQLVAGVNDGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ ED RV +FG+++E I P TG+ ++++E+I IY Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSLESINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L+TA++ I+ EL RL L EG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKDRLDTAVQAIRSELTERLDFLNTEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR PG P L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREPGTAPECLIDYFPKDWLLIVDESHVTCSQLQAMYNGDQARKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ T+ VSATPG+WELE + +Q+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELEVSGDEVAQQVIRPTGVLDPIVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++E Sbjct: 423 VRPTTGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 +V +LYAD +T S+ AI ET RRR Q +N+KH I P + +K I Sbjct: 543 HVEGVALLYADNMTDSMAKAISETERRRTIQQAYNEKHGIVPTAAGKKASNSILSFLELS 602 Query: 734 --------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 D L++ A+ ++D ++ + L +M AA L+FEEAA Sbjct: 603 RKLKTEGPDADLVQVASKAVEALDDDADGMALDALPELIDQLEMKMKEAAKKLDFEEAAN 662 Query: 786 IRDEIKRLK 794 +RD IK+L+ Sbjct: 663 LRDRIKQLR 671 >gi|73748283|ref|YP_307522.1| excinuclease ABC subunit B [Dehalococcoides sp. CBDB1] gi|90110884|sp|Q3ZZK7|UVRB_DEHSC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|73659999|emb|CAI82606.1| excinuclease ABC, subunit B [Dehalococcoides sp. CBDB1] Length = 664 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/657 (52%), Positives = 463/657 (70%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ +GDQP A+ +L KG+ S Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 4 FKIVSDFALTGDQPQAVEKLAKGLVSGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID++RH Sbjct: 64 HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+L ER D ++V+SVSCIYG+G E Y ++ LK G S + +L LV QY+R Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSFRRDLILRRLVDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FR+ GD++EI P++ E++A RV FG++IE I P++G+ + +E I IY Sbjct: 184 DLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLAGIEEINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + A+K I+ EL+ RL ELE EG++LEA RL+QR YDLEM+E G C Sbjct: 243 PAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G P TL +Y PED LL VDESH+++PQI GMY GD RK TL +Y Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F+E+ I VSATPG +E E +VEQ++RPTGL++P + Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEPVMT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +E+ + R+L+T LTK+M+E L +YL E ++ Y+HSEV TLE Sbjct: 422 VKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+ +LIQT+GRAAR Sbjct: 482 RIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +VI+YAD IT S+Q A+DE RRR+ Q ++N+ HNI PQ +++ I ++ + I Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + T +S + + + ++ A L K L QM AA NL FE AA IRD + L+++ Sbjct: 599 SVTAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655 >gi|218438740|ref|YP_002377069.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7424] gi|226695481|sp|B7KC96|UVRB_CYAP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|218171468|gb|ACK70201.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7424] Length = 665 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/667 (52%), Positives = 464/667 (69%), Gaps = 18/667 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F +Q + +GDQP AIAQL+ I + Q LLG TG+GKTFT+A IE + +P + Sbjct: 1 MNLFHLQAPFQATGDQPQAIAQLVNSIEKGNRFQTLLGATGTGKTFTIAATIEKIGKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID Sbjct: 61 VLAHNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVSDTYIEKSASINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D +VV+S+SCIYG+G Y + + L++G + Q++LL LV QY Sbjct: 121 LRHSATRSLFERRDVVVVASISCIYGLGMPSEYLKASIGLEVGKEINQRQLLRDLVSVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FR+ GD +E+ P++ ED RV FG++I+ I P+TG ++++E + Sbjct: 181 SRNDLDLQRGRFRLRGDVLELVPAY-EDRVIRVEFFGDEIDAIRYLDPVTGNSLQSLERV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VTP L A + I+ EL+ RL ELEK+G+LLEAQRL QR YDLE+L G Sbjct: 240 NIYPARHFVTPDDQLEAACQGIELELEDRLEELEKQGKLLEAQRLGQRTRYDLELLREVG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSRYL GR PG+PP L +Y P+D LL +DESHVTIPQ+ GMY GD RK L Sbjct: 300 YCNGVENYSRYLAGREPGQPPECLIDYFPKDWLLVIDESHVTIPQLRGMYNGDQARKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS DNRPL+ EE+ + VSATPG+WE+EQ QG ++EQIIRPTG++DP Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWEKVNQCVFVSATPGNWEIEQSQGQVIEQIIRPTGVLDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R QV+D+ EI ++ R+L+T LTKRMAEDLTEY ER ++V+Y+HSE+ Sbjct: 420 EIFVRPTEGQVDDLLGEIKQRIKRKERVLITTLTKRMAEDLTEYFQERGVKVQYLHSEIS 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ++ERIEI+++LR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGR Sbjct: 480 SIERIEILQNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR++ + ILYAD +T S+ A++ET RRR Q+ HNK+H I PQ + + I L Sbjct: 540 AARHIQGQAILYADNLTDSMIKAMEETERRRNIQMAHNKRHGITPQPIVTRSSNAILSFL 599 Query: 738 LEDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 +IS ++AQQL L +K + L +QM AA L FEEAA+ R Sbjct: 600 -------DISRRLNAQQLEKVYDQADELPLEKVPELIGQLEEQMKEAAKKLEFEEAAKYR 652 Query: 788 DEIKRLK 794 D I+ L+ Sbjct: 653 DRIQHLR 659 >gi|167750402|ref|ZP_02422529.1| hypothetical protein EUBSIR_01376 [Eubacterium siraeum DSM 15702] gi|167656553|gb|EDS00683.1| hypothetical protein EUBSIR_01376 [Eubacterium siraeum DSM 15702] gi|291530927|emb|CBK96512.1| Excinuclease ABC subunit B [Eubacterium siraeum 70/3] Length = 652 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/657 (50%), Positives = 459/657 (69%), Gaps = 10/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++++Y P GDQP AI L G+ +K Q+LLGVTGSGKTFTMA +IE + RP +++A Sbjct: 4 FVLKSNYKPMGDQPQAIDSLANGVLDGDKEQVLLGVTGSGKTFTMANIIEKVNRPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD YIEK+S+IN++IDR+RH Sbjct: 64 HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDAYIEKDSAINDEIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + ++ ++ G + +++ LV+ QY+R Sbjct: 124 SATAALAERRDVIIVASVSCIYSLGSPEDYRENMLSIREGQERSRDDIIKRLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPS-HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ IR FRV GD +E+FP+ D A R+ FG++I+ ISE +TG+ R + I Sbjct: 184 DMNFIRNKFRVRGDVLEVFPAGSTSDKAIRIEFFGDEIDRISEIDIVTGEVKRRFSHVAI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHY+ + L ++ I+ E++ R+ +L+EAQR+EQR YD+EML G+C Sbjct: 244 FPASHYIVSKARLENSLTEIENEMEERVKFFTDNHKLIEAQRIEQRTRYDMEMLREIGTC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + +ENYSR L GR PG P TL + P+D L+F+DESHVT+PQ+ GMY GDF RK L + Sbjct: 304 KGVENYSRVLAGRAPGSSPITLMHHFPKDFLMFIDESHVTLPQVRGMYGGDFARKKNLVD 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRP+ F+E+ + I VSATPG +E EQ+IRPTGL+DP + Sbjct: 364 YGFRLPSAYDNRPMNFDEFTSMINQVIYVSATPGEYEKSHAVN-TAEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EI+ Q+ED+Y EIN ++G +L+T LTK+MAEDLT Y + +++RYMH ++ ++ Sbjct: 423 EIKPVAGQIEDLYSEINERTKKGECVLITTLTKKMAEDLTAYYEKLGVKIRYMHHDIDSI 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLR+ FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 483 ERMEIIRDLRMHVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN KVI+YADT+T S++ A+ ET RRRE Q+++N++H I P+++ + + V++ + Sbjct: 543 RNAEGKVIMYADTVTDSMEKAVTETNRRREIQMKYNEEHGITPKTIVKDVRAVLEISSGK 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D ++ +K + +A +K +M AA L+FE AA +RD+IK L+ S Sbjct: 603 DK--------GKKRKYTKAEREALIKQYTAEMKNAAKLLDFEHAAYLRDKIKELQES 651 >gi|312880241|ref|ZP_07740041.1| Excinuclease ABC subunit B [Aminomonas paucivorans DSM 12260] gi|310783532|gb|EFQ23930.1| Excinuclease ABC subunit B [Aminomonas paucivorans DSM 12260] Length = 672 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/650 (52%), Positives = 454/650 (69%), Gaps = 12/650 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ D+ P+GDQP AI L++G Q LLGVTGSGKT+TMA+V++ +QRP +VMA Sbjct: 5 FRLVADWDPAGDQPEAIEALVRGFEGGLSRQTLLGVTGSGKTYTMAQVVQRLQRPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAV+YFVSYYDYYQPEAY+P D YIEK++SINE+I+++R Sbjct: 65 HNKTLAAQLYSEFKGFFPENAVQYFVSYYDYYQPEAYMPAQDLYIEKDASINERIEKLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T++LLER D +VV+SVSCIYG+G ++Y + I + ++G++ +K L L+ Y+R Sbjct: 125 STTKALLERRDVLVVASVSCIYGLGKRKNYEEAIFRFQVGETWPRKRFLERLLANYYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ G FRV GD +EI+P++ D A RVS ++I+ I E P++G+ + + ++ Sbjct: 185 DVAFTPGVFRVRGDLLEIYPAY-SDTALRVSFLDDEIDRIDEIDPVSGKTLLRKDRGAVF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT + AM+ I++ELK L +L GRLLEAQRLE R YD+EML+ G C Sbjct: 244 PAQHYVTSPDAIAQAMEKIEQELKAHLEDLRSRGRLLEAQRLESRTRYDMEMLQEVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR GE P TL ++ P+D LLF+DESH+TIPQI GMY GD RK L E+ Sbjct: 304 GIENYSRFLDGREVGETPGTLMDFFPQDYLLFLDESHITIPQIRGMYNGDRARKEVLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLRFEE+ + VSATPG +E+ Q +VEQ++RPTG+++P VE Sbjct: 364 GFRLPSCLDNRPLRFEEFESFMGQALFVSATPGDYEI-QTSARVVEQLVRPTGVLEPQVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ +E+ L A++G R L+T LTKR AEDL EY E I+VRY+HSE+ T E Sbjct: 423 VRPATGQVDDLLEELRLVAERGDRALVTTLTKRSAEDLAEYFAELGIQVRYIHSELDTFE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +++DLR G F VLVG+NLLREGLD+PE LVAIL+AD+EG+LRS SLIQ IGRAAR Sbjct: 483 RAALLKDLRQGVFGVLVGVNLLREGLDLPEVSLVAILEADREGYLRSHRSLIQMIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N KVILY D +T S++LA++ET RRR Q N++ I P +V+++I ++ LLED Sbjct: 543 NEAGKVILYGDRVTDSMRLAVEETQRRRRVQETFNRERGIVPTTVRKEIKSLLPQELLED 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 Q+ ++KG K L + M A + L+FEEAA +RD+I Sbjct: 603 ----------QEERTPQRKGSVDRKELERMMWAAVERLDFEEAAALRDQI 642 >gi|325282776|ref|YP_004255317.1| UvrABC system protein B [Deinococcus proteolyticus MRP] gi|324314585|gb|ADY25700.1| UvrABC system protein B [Deinococcus proteolyticus MRP] Length = 678 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/656 (51%), Positives = 464/656 (70%), Gaps = 10/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PSGDQP AI L+ G+ S + Q LLG TG+GKT++MAKVIE QRPA++MA Sbjct: 9 LKVHSEFQPSGDQPTAIRTLVDGLESGLRFQTLLGATGTGKTYSMAKVIEETQRPALIMA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK+L AQL +EF+ FFP NAVE+F+SYYDYYQPEAYVP D +IEK++SIN++I+R+RH Sbjct: 69 PNKVLTAQLAAEFREFFPDNAVEFFISYYDYYQPEAYVPGKDLFIEKDASINQEIERLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S TRSLL R D IVV+SVS IYG+G Y+ + + LK+G+ V ++ ++ LV QY+R Sbjct: 129 STTRSLLTRRDVIVVASVSAIYGLGDPAEYTALNLVLKVGEEVGREAIIERLVGMQYERN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI ++ G FR G+ +E++ ++ E R+ ++G+++E IS PLTG +I +++ +Y Sbjct: 189 DIELLPGRFRAKGEMVEVWAAYDEQPT-RIELWGDEVERISLVDPLTGDRITDMDGTVVY 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYV+ + A+ I++EL+ RL G+LLEAQRL++R YDLEML G C Sbjct: 248 PAKHYVSGAGNIERAIGGIEKELEERLEYFMSTGKLLEAQRLKERTLYDLEMLRVLGHCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P T+ +Y P+D + F+DESHVT+ QI GM GD RK TL ++ Sbjct: 308 GIENYSRHIDGRRPGETPYTMLDYFPDDFITFIDESHVTVSQIGGMANGDRARKQTLVDH 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL +E+ + VSATPG +E E I +QIIRPTGLVDPPV Sbjct: 368 GFRLPSAMDNRPLNLDEFWAKTGQVVFVSATPGPFEREHSDQI-ADQIIRPTGLVDPPVT 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ + A G R L+T LTKRMAEDLTEYL E+ +R RYMHS++ ++E Sbjct: 427 VRPIQGQVDDLLGRVRERAAAGERTLVTTLTKRMAEDLTEYLLEKGVRARYMHSDIDSVE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R IIRDLRLG +DVLVGINLLREGLD+PE LVAILDADK GFLRS+ SLIQTIGRAAR Sbjct: 487 RQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSERSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 NVN +VILY D +T ++Q A+DET RRREKQL +N++H I P++V + + +VI +E Sbjct: 547 NVNGEVILYGDNVTPAMQFAMDETLRRREKQLAYNEEHGITPRTVSKSVRDVIRGEEVEG 606 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ N+ D + L+ A L L M A+++L+FE AA +RD+I+ +++ Sbjct: 607 EISSENVGDDREALT-------AQLTELELSMWQASEDLDFELAASLRDQIRAIEA 655 >gi|313679222|ref|YP_004056961.1| excinuclease ABC subunit b [Oceanithermus profundus DSM 14977] gi|313151937|gb|ADR35788.1| Excinuclease ABC subunit B [Oceanithermus profundus DSM 14977] Length = 683 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/647 (52%), Positives = 457/647 (70%), Gaps = 9/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AI QL++G S + Q LLG TG+GKT TMAKVIEA+ RP +VMAPNK+LAAQ Sbjct: 24 PRGDQPKAIRQLVEGFASGLRYQTLLGATGTGKTVTMAKVIEALGRPTLVMAPNKVLAAQ 83 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D +IEK++SIN +I+R+RHS T+SLL Sbjct: 84 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGRDLFIEKDASINPEIERLRHSTTQSLLT 143 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+GS E Y M + L++G + ++E+L LV+ Y R DI + G Sbjct: 144 RRDVIVVASVSAIYGLGSPEDYYAMHLVLRVGQVMRREEILERLVELSYDRNDIDLQPGR 203 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ IE++P++ + R+ ++G++I+ I +P++G++ ++T+ + +HY TP Sbjct: 204 FRAKGEVIEVWPAYGTEPV-RIELWGDEIDRIHTVHPISGERGAELDTLMLMPATHYATP 262 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 L A++ I+ ELK R+ E EK G+LLEAQRL +R YDLE+L G C IENY+R+ Sbjct: 263 EERLRPAIQAIEAELKARVAEFEKAGKLLEAQRLRERTLYDLELLRLMGHCPGIENYARH 322 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 L+GR PGEPP TL +Y PED + F+DESHVT+PQI GMY GD+ RK L EYGFRLPS + Sbjct: 323 LSGRAPGEPPYTLLDYFPEDFVTFIDESHVTVPQIRGMYNGDYARKKVLVEYGFRLPSAL 382 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPL+ +E+ + VSATPG ELE G +VEQIIRPTGL+DP V ++ A Q+ Sbjct: 383 DNRPLKLDEFLERTGQMVFVSATPGPEELEMS-GQVVEQIIRPTGLLDPKVTVKPAEGQM 441 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 ED+ I A + R+L+TVLTKRMAEDLT YL E +R RYMH E+ ER ++RDL Sbjct: 442 EDLMAAIKERAARDERVLVTVLTKRMAEDLTAYLSEHGLRARYMHHELDAFERQALLRDL 501 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG FDVLVGINLLREGLD+PE LVAILDADK GFLRS+ SLIQTIGRAARN +V L Sbjct: 502 RLGHFDVLVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAGGEVYL 561 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YA+ ++++++ A++ET RRR Q +N++HNI P+++ + + ++ P E+A ++ Sbjct: 562 YAEEVSEAMKAAVEETNRRRAVQEAYNREHNITPRTIDKSVRRMVKPEDFEEAPEPAAAV 621 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D ++L K + L M A+ +L+FE AA +RD+++ L++ Sbjct: 622 DEEEL-------KRQIADLELAMWSASQDLDFERAAELRDQLRALEA 661 >gi|257452344|ref|ZP_05617643.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R] gi|317058887|ref|ZP_07923372.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R] gi|313684563|gb|EFS21398.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R] Length = 660 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/660 (51%), Positives = 473/660 (71%), Gaps = 11/660 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ Y P+GDQP AI +L+K + + + Q+LLGVTGSGKTFT+A VIE +QRP +++ Sbjct: 1 MFRLCAKYQPTGDQPIAIEKLVKSLERKNRDQVLLGVTGSGKTFTIANVIEKVQRPTLII 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E+K+FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+S++NE+ID++R Sbjct: 61 APNKTLAAQLYQEYKSFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + + + + +L+ L+ +Y+R Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGISRSKLIERLIALRYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378 D+ +RGTFRV GD ++I+PS+LE +R+ +G+D+E ISE + LTG+KI+ N+E I Sbjct: 181 NDMNFVRGTFRVKGDVVDIYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IYA + Y+T L + I+E+ + + + G+LLEAQRL+QR+ YD+EM++ G Sbjct: 240 IYAATQYITEEEDLERIITEIREDQVREVKQFQDSGKLLEAQRLQQRVDYDIEMIKEIGY 299 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD RK TL Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTTLV 359 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRL + +DNRPL+F+E+ TI VSATPG +E++Q +VEQ+IRPTG++DP Sbjct: 360 ENGFRLKAALDNRPLQFDEFRARTGQTIYVSATPGDYEIQQSGSSVVEQLIRPTGILDPF 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R + QV+D+ +EI+ + R+L+T LTK+MAE+LTEY E ++VRYMHS+V T Sbjct: 420 IEVRPTKGQVDDLLEEIHKRVVKKQRVLVTTLTKKMAEELTEYYLELGVKVRYMHSDVDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+RIEII+ LR G+ DVLVGINLLREGLDIPE LVAIL+ADKEGFLRS+ SLIQTIGRA Sbjct: 480 LDRIEIIKLLRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDP 735 ARNV +VILY D +T S+ LA++ET RRR Q +N H I P+++ ++I E +D Sbjct: 540 ARNVEGRVILYGDVMTDSMALAMEETKRRRTIQENYNLLHGIEPEAIIKEIAEEMIQLDY 599 Query: 736 ILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + E+A + + K+ K H K ++ + L+FE+A +RDE+K L+ Sbjct: 600 GISEEAFSKKSKKKFHSKEEIEKEIAKCHKKIVK-----LSKELDFEQAILVRDEMKLLQ 654 >gi|238917729|ref|YP_002931246.1| excinuclease ABC subunit B [Eubacterium eligens ATCC 27750] gi|238873089|gb|ACR72799.1| excinuclease ABC subunit B [Eubacterium eligens ATCC 27750] Length = 689 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/650 (52%), Positives = 455/650 (70%), Gaps = 1/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P GDQP AI L KG + + L+GVTGSGKTFTMA +I+ +Q+P ++++ Sbjct: 27 FVLHSDFKPMGDQPQAIEALTKGFEEGNQFETLVGVTGSGKTFTMANIIQNVQKPTLIIS 86 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SSIN++ID++RH Sbjct: 87 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSINDEIDKLRH 146 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ERND I+V+SVSCIYG+G+ Y M++ L+ G ++ + + L+ QY R Sbjct: 147 SATAALSERNDVIIVASVSCIYGLGAPVDYKNMVISLRPGMEKDRDDCIRKLIDIQYVRN 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +E++PS A RV FG++++ ISE LTG+ +E I I+ Sbjct: 207 DQDFKRGTFRVRGDVVEVYPSSSSGDAIRVEFFGDEVDRISEIDSLTGEVKGVLEHIAIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHYV + ++ A++ IK EL R+ + E +LLEAQR+E+R +D+EM++ TG C Sbjct: 267 PNSHYVVEKEKMDAAIENIKAELAERVKYFKSEDKLLEAQRIEERTNFDIEMMQETGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L G G PP TL +Y P+D L+ VDESH+TIPQI GMY GD RK TL +Y Sbjct: 327 GIENYSRHLAGLPAGCPPYTLMDYFPDDFLIIVDESHITIPQIRGMYAGDQSRKTTLVDY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ + VSATP ++E E + + EQ+IRPTGL+DP + Sbjct: 387 GFRLPSAKDNRPLNFSEFESKISQMLFVSATPSTYEAEH-ELMRTEQVIRPTGLLDPEIT 445 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ EIN + ++L+T LTKRMAEDLT+YL E IRV+Y+H+++ TLE Sbjct: 446 VKPIEGQIDDLISEINKETAKKNKVLVTTLTKRMAEDLTDYLKEAGIRVKYLHADIDTLE 505 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLR++TSLIQTIGRAAR Sbjct: 506 RQKIIRDMRLDGFDVLVGINLLREGLDIPEISLVAILDADKEGFLRTETSLIQTIGRAAR 565 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+YAD IT+S++ AI ET RRR+ Q ++N +H I PQ++K+ + ++I + Sbjct: 566 NAEGHVIMYADKITESMEKAISETERRRKIQQDYNDEHGITPQTIKKAVRDLISISKAAE 625 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + + S+S K+ + + K M AA LNFEEAA++RD++ Sbjct: 626 PGDASGKLKVDYESMSIKELEKVKTQVEKNMRKAAAELNFEEAAQLRDKM 675 >gi|300865528|ref|ZP_07110313.1| excinuclease ABC subunit B [Oscillatoria sp. PCC 6506] gi|300336471|emb|CBN55463.1| excinuclease ABC subunit B [Oscillatoria sp. PCC 6506] Length = 667 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/664 (53%), Positives = 460/664 (69%), Gaps = 17/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P+GDQP AIAQL G+ + ++ Q LLG TG+GKTF++A VIE + RP +V+A Sbjct: 5 FYLQAPFEPTGDQPKAIAQLTSGVLAGDRFQTLLGATGTGKTFSIAAVIEKVGRPTLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+ TDTYIEK ++IN++ID +RH Sbjct: 65 HNKTLAAQLCNELRGFFPNNAVEYFVSYYDYYQPEAYIAVTDTYIEKTAAINDEIDMLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + + ++G V Q++LL LV QY R Sbjct: 125 SATRSLFERRDAIVVASISCIYGLGMPAEYLKAAIPFQVGTEVNQRQLLRDLVNIQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EI P++ ED R+ FG++I+ I P++G I++VE + IY Sbjct: 185 DLDLGRGKFRVKGDVLEIGPAY-EDRIIRIEFFGDEIDAIRYVDPVSGGIIQSVEALNIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT L A + I+ E++ + EL+K G+L+EAQRLEQR YDLEML G C Sbjct: 244 PARHFVTAEDKLEAACQAIEIEIEDSVEELKKAGKLVEAQRLEQRTRYDLEMLREVGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GRN GEPP L +Y P+D LL +DESHVT+PQ+ GMY GD RK L E+ Sbjct: 304 GVENYSRHLAGRNAGEPPECLIDYFPKDWLLVIDESHVTVPQLRGMYNGDQARKKVLIEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ I VSATPG+WE+E + + +Q+IRPTGL+DP + Sbjct: 364 GFRLPSAADNRPLKAEEFWEKVNQCIFVSATPGNWEIEISESRVADQVIRPTGLIDPEIY 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI R L+T LTKRMAEDLTEYL ER IRVRY+HSE++++E Sbjct: 424 VRPTEGQIDDLLGEIKERVLLQERTLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIQSIE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++ LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RIEILQSLRDGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V + ILY D +T S+ AIDET RRR QL +NK H I PQS+ +K + + IL Sbjct: 544 HVRGQAILYGDNLTDSMIKAIDETDRRRGIQLAYNKMHGITPQSIAKKSSK--NAIL--- 598 Query: 741 AATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 A ++S +++Q L LS ++ + L QM AA + FEEAA+ RD I Sbjct: 599 -AFLDVSRRLNSQHLETVYEQIDELSLEEIPELIGQLEVQMKEAAKKMEFEEAAKFRDRI 657 Query: 791 KRLK 794 K L+ Sbjct: 658 KHLR 661 >gi|309777688|ref|ZP_07672638.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 3_1_53] gi|308914592|gb|EFP60382.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 3_1_53] Length = 654 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/594 (55%), Positives = 429/594 (72%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + +DY P GDQP AI +L+ GI +K Q+LLG TG+GKTFT++ VI + +P +V Sbjct: 5 LFDLVSDYQPQGDQPKAIRELVNGIKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLVF 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R Sbjct: 65 AHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNIELDMLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +A S+LER D I+++SV+CIYG + E Y +M +++GD +++KEL+ LV +QY R Sbjct: 125 MAAVNSILERRDTIIIASVACIYGASNPEQYREMFFSIRVGDIIDRKELMGKLVARQYTR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ ++RGTFRV GD IE+ P H + R+ MF ++IE I E PLTG+ + + Sbjct: 185 NDMDLLRGTFRVRGDVIEVAPGHTDSFILRIEMFDDEIERICEVDPLTGKVLNAYTVYVV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y S Y T + +N A I+EEL RL LE EG+LLE QRLEQR YD+E L G C Sbjct: 245 YPASGYATKQEIINRAANTIEEELADRLQVLENEGKLLEKQRLEQRARYDIEALREFGVC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD RK TL Sbjct: 305 PGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLVN 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ + I VSATPG++ELEQ +G I+EQIIRPTGL+DP V Sbjct: 365 YGFRLPSALDNRPMRFEEFEKMINQAIFVSATPGNYELEQTKGEIIEQIIRPTGLLDPVV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ DEI ++ R L+T LT RMAEDLT YL + +V ++H EVKT+ Sbjct: 425 TVRPTQGQIDDLVDEIRTRIEKNERTLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKTI 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLR GK+DVL+GINLLREGLDIPE L+ ILDADKEGFLRS+ SLIQ IGRAA Sbjct: 485 ERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLITILDADKEGFLRSERSLIQIIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 RN + +VI+YAD +T S+Q A+DET RRRE Q+ +NK+H I P+++ + I EV+ Sbjct: 545 RNAHGQVIMYADKVTDSMQKALDETARRREIQIAYNKEHGITPKTIMKPIHEVV 598 >gi|282851455|ref|ZP_06260820.1| excinuclease ABC, B subunit [Lactobacillus gasseri 224-1] gi|282557423|gb|EFB63020.1| excinuclease ABC, B subunit [Lactobacillus gasseri 224-1] Length = 643 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/636 (52%), Positives = 443/636 (69%), Gaps = 2/636 (0%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 + G EK Q+L G TG+GKTFTMA VI + +P +V++ NK L QLY EFK FFP Sbjct: 1 MTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPK 60 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH T L+ RND IVV+SVS Sbjct: 61 NAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRHKTTSDLMSRNDVIVVASVS 120 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 CIYG+G Y+ +V + G + + LL LV QY R DI RG FRV GD +EIF Sbjct: 121 CIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRNDIDFQRGRFRVRGDVVEIF 180 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P+ D A+RV FG++I+ I E LTG+ I E + I+ +H+VT + A+ I Sbjct: 181 PAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIFPATHFVTNEQIMQRALASI 240 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 K+E+ +++ + E EG+LLEAQR++QR TYD+EM+ G IENYSR++ GR G+PP Sbjct: 241 KDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTNGIENYSRHMEGRKAGQPPH 300 Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519 TL ++ P+D L+ +DESH T+P++ MY GD RK TL +YGFRLPS +DNRPL+ EE+ Sbjct: 301 TLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDYGFRLPSALDNRPLKLEEFE 360 Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 + VSATPG +EL Q VEQIIRPTGL+DP +E+R + Q++D+ EIN Sbjct: 361 KHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIEVRPIKGQIDDLVGEINKRI 419 Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLER+EIIRDLRLGKFDVL+GI Sbjct: 420 DRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLERLEIIRDLRLGKFDVLIGI 479 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 NLLREG+D+PE LVAILDADKEGFLRS L+QTIGRAARN N KVI+YAD+IT S++ Sbjct: 480 NLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNSNGKVIMYADSITDSMRE 539 Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-DAQQLSLSKK 758 AID T RRR Q++ NK+H I P+++ + I +VI D S D L+KK Sbjct: 540 AIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSDEKENKESFADLNFDELTKK 599 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + +K+L QM AA L+FEEAA +RD I L+ Sbjct: 600 QKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 635 >gi|309791541|ref|ZP_07686040.1| excinuclease ABC subunit B [Oscillochloris trichoides DG6] gi|308226401|gb|EFO80130.1| excinuclease ABC subunit B [Oscillochloris trichoides DG6] Length = 668 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/663 (50%), Positives = 469/663 (70%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q Y P+GDQP AIAQL+ G+ + + Q LLG TG+GKTF MA++ E QRP +V+A Sbjct: 3 FRVQAPYQPTGDQPQAIAQLVAGLQAGYRHQTLLGATGTGKTFVMAQIFEQAQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L +QL++EF++F P AVE F+SYYD Y PEAYVP D YIEKE+SINE+IDR+RH Sbjct: 63 HNKTLVSQLWAEFRDFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++L R D ++V+SVS I+G+GS + Y Q+++ ++ G+ + +LL L+ Q++R Sbjct: 123 AATQALFTRRDVLIVASVSAIFGLGSPQDYGQVVIPIRSGEVRNRDKLLRQLIDLQFERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD+++I P++ E A R+ +G++IE I E PLTG+ + + IY Sbjct: 183 DIDFHRGTFRVRGDTLDILPANSE-TAVRIEFWGDEIERIVEIDPLTGEILLTRTAVDIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + L A+ I++EL RL +LE G+ LEA RL+QR YDLEML G C Sbjct: 242 PAKHFVTTKDKLAAAVLSIQDELGERLRDLEAAGKNLEAARLKQRTMYDLEMLGEVGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR+PG+ P TL +Y P+D LLF+DESH+++PQ+ GMY+GD RK TL ++ Sbjct: 302 GIENYSRHMDGRSPGQTPWTLLDYFPDDFLLFIDESHISLPQVRGMYKGDRSRKETLVDF 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I VSATPG +E EQ Q I VEQIIRPTGLVDP +E Sbjct: 362 GFRLPSALDNRPLQFDEFAEHVYQAIYVSATPGPYEREQSQQI-VEQIIRPTGLVDPIIE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ++ Q++D+ EI L +G R L+T LTKRMAEDL +YL E +R Y+H+++ TLE Sbjct: 421 VRPSKGQIDDLVAEIRLRVTKGQRALVTTLTKRMAEDLADYLKEVGVRTMYLHADIDTLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +D +VGINLLREGLD+PE L+AILDADKEG+LRS+TSLIQ IGRAAR Sbjct: 481 RVEILRDLRLGVYDTVVGINLLREGLDLPEVSLIAILDADKEGYLRSETSLIQIIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738 ++ +VI+YADTITKS+ AI ET RRR+ Q+ HN +HNI P + + + ++ D + + Sbjct: 541 HLEGRVIMYADTITKSMDAAIRETQRRRDIQIAHNMRHNITPVGISKGVRDLSDRLRKMA 600 Query: 739 EDAATTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 E+ + + A L +++ +K L KQM AA +L FE+AA +RD+I L Sbjct: 601 EERGEYQVQSRDDTAHAIVHELPREEIHKLIKDLEKQMKQAAKDLAFEKAAALRDQIMEL 660 Query: 794 KSS 796 + + Sbjct: 661 RKT 663 >gi|260102499|ref|ZP_05752736.1| excision endonuclease subunit UvrB [Lactobacillus helveticus DSM 20075] gi|260083704|gb|EEW67824.1| excision endonuclease subunit UvrB [Lactobacillus helveticus DSM 20075] gi|328461826|gb|EGF34052.1| excinuclease ABC subunit B [Lactobacillus helveticus MTCC 5463] Length = 682 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/659 (50%), Positives = 464/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND IVV+SVS IYG+G + Y++ ++ + G ++ LL LV QY R Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNVLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDDQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+V+Y+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEHGITPKTIIKPVQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ D L+ + K +K+L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 GDKDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667 >gi|157165003|ref|YP_001466603.1| excinuclease ABC subunit B [Campylobacter concisus 13826] gi|112800746|gb|EAT98090.1| excinuclease ABC, B subunit [Campylobacter concisus 13826] Length = 658 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/657 (51%), Positives = 457/657 (69%), Gaps = 7/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ A+ +++K I S K Q LLGVTGSGKTFTMA VI + P ++M Sbjct: 4 FEISSKFSPSSDQARAVKEIVKSIKSGNKYQTLLGVTGSGKTFTMANVIRELNMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR+D YIEK+SS+N++++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRSDLYIEKDSSVNDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D + V+SVS YG+G+ Y M+ L +GD + Q+ LL LV YKR Sbjct: 124 SATASLLSFDDVVCVASVSANYGLGNPSEYKGMVAYLNVGDKINQRTLLQKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD ++++P++ D A+R+ FG++IE + L +K +++ +Y Sbjct: 184 DVYFDRGDFRVNGDVVDVYPAYFNDEAFRIEFFGDEIETMYSLDVLENKKRHDLKKFILY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S ++ L AMK I+EEL RL E ++G+L+EAQRL+QR+ +DLEM+ +TG C+ Sbjct: 244 PTSQFIVGADRLKIAMKEIEEELDARLKEFNEQGKLVEAQRLKQRVEFDLEMMASTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P ++F+Y +D L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFEISGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+F+E+ + + VSATP +EL QG + EQI+RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFDEFISKKAKFLFVSATPNEYELGISQGHVYEQILRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI+ + QVE ++DE +G R+L+TVLTK+MAE+L+ Y E I+V+YMHS++ Sbjct: 424 IIEIKDSDNQVEALFDEAKAVIARGERVLVTVLTKKMAEELSRYYIELGIKVKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G+FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT+GR Sbjct: 484 AIERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN KV+++A ITKS++ AID TT RR+ Q E+NK H I P S I E + Sbjct: 544 AARNVNGKVLMFAKKITKSMKEAIDTTTARRKFQDEYNKAHGITPHSASRNIEESLH--- 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ED T + A + + A +K LRKQM AA L FE+AA +RDEI +++ Sbjct: 601 VED-GTEILRKGANLEKMPASERAAIVKELRKQMLEAAAQLEFEKAAALRDEIAKMR 656 >gi|260434319|ref|ZP_05788289.1| excinuclease ABC, B subunit [Synechococcus sp. WH 8109] gi|260412193|gb|EEX05489.1| excinuclease ABC, B subunit [Synechococcus sp. WH 8109] Length = 679 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/671 (51%), Positives = 453/671 (67%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + Y P GDQP AI QL+ G++S E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 YDLTAPYSPKGDQPTAIKQLVAGVNSGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRSQLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ ED RV +FG+++E I P TG+ +++++ + IY Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSMDAVNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L++A+ I+ EL+ RL L EG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKDRLDSAISAIRSELRERLDVLNGEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ E W+ R T+ VSATPG+WE+E G + EQ+IRPTG++DP V Sbjct: 363 GFRLPSAADNRPLKGAEFWDKAR-QTVFVSATPGNWEMEVSGGEVAEQVIRPTGVLDPVV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI + + R+L+T LTKRMAEDLT+YL E +RVRY+HSE+ ++ Sbjct: 422 EVRPTTGQVDDLLGEIRNRSAKNQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R+V +LYAD +T S+ AI ET RRR Q +N+K+ + P + +K I L Sbjct: 542 RHVEGMALLYADNMTDSMAKAISETERRRAIQQAYNEKNGVVPTAAGKKASNSILSFLEL 601 Query: 740 DAATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEA 783 DA + + K KA + L +M AA L+FEEA Sbjct: 602 SRKLKQDGPDADLVEVVGKAAKALEDDPDAGLALEALPELIDQLEAKMKQAAKKLDFEEA 661 Query: 784 ARIRDEIKRLK 794 A +RD +K+L+ Sbjct: 662 ANLRDRVKQLR 672 >gi|295134952|ref|YP_003585628.1| excinuclease ABC subunit B [Zunongwangia profunda SM-A87] gi|294982967|gb|ADF53432.1| excinuclease ABC subunit B [Zunongwangia profunda SM-A87] Length = 668 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/664 (51%), Positives = 465/664 (70%), Gaps = 15/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++DY P+GDQP AI QL+ GI ++ Q LLGVTGSGKTFT+A VIE +Q+P +V+A Sbjct: 3 FKIESDYKPTGDQPNAIKQLVGGIEKNDQFQTLLGVTGSGKTFTVANVIEEVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P + TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + +V ++ + + + L SLV+ Y R Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHSLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + + G FR+ GD++++FPS+ D A+R+ FG++IE+I F P T I E + I Sbjct: 183 TEAEFVHGNFRIKGDTVDVFPSY-ADNAFRIHFFGDEIEDIEAFDPATNDVIEKYERLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A++ I+++L ++ G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQNAIRNIQDDLVKQVDYFRDIGKHLEAKRLDERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTIPQ+ MY GD RK TL + Sbjct: 302 SGIENYSRYLDGRQPGTRPFCLLDYFPDDFLMVVDESHVTIPQVHAMYGGDRSRKETLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++ +G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEILQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EI + ++ R L+T LTKRMAE+L +YL +IR RY+HS+V TL Sbjct: 422 EVRPSQNQIDDLIEEIQIRVEKDERTLVTTLTKRMAEELAKYLTRIDIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAI+DADKEGFLRS SL QTIGRAA Sbjct: 482 ERVEIMQDLRRGLFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---------M 730 RNV K ILYAD IT S+Q +DET RR KQ+ +NK HNI P+ + +K+ + Sbjct: 542 RNVEGKAILYADKITDSMQKTMDETEYRRTKQMNYNKAHNITPKPLVKKLESSTLVKKKL 601 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 E+ + D + + + L+K + ++ RKQM AA L+F EAAR+RDEI Sbjct: 602 EIFEG----DNKPPMQAAEEEGAYLTKPQIDKKIREKRKQMETAAKELDFMEAARLRDEI 657 Query: 791 KRLK 794 K L+ Sbjct: 658 KILQ 661 >gi|169335817|ref|ZP_02863010.1| hypothetical protein ANASTE_02243 [Anaerofustis stercorihominis DSM 17244] gi|169258555|gb|EDS72521.1| hypothetical protein ANASTE_02243 [Anaerofustis stercorihominis DSM 17244] Length = 663 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/658 (52%), Positives = 464/658 (70%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSG QP I +L K I S + Q LLGVTG GKT+ MAK+IE +QRPA++MA Sbjct: 4 FKVHSPFEPSGGQPEVIDKLSKSILSGNRDQTLLGVTGCGKTYIMAKIIEKVQRPALIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAYVP D YI K+SSIN+ ID++RH Sbjct: 64 HNKTLAAQLANEFRSFFPDNAVEYFVSYYDYYQPEAYVPGRDLYIAKDSSINDDIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y + ++ L+ G E+ +++ L+ QY R Sbjct: 124 SATSALFERKDVIIIASVSCIYGLGSPFHYKEQVLSLRPGMIKERDDVIRKLIDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GDS+E+FP++ + A R+ F ++I+ I E LTG+ IR+++ IY Sbjct: 184 DIDFHRGTFRVRGDSVEVFPANSSEEAIRIEFFDDEIDRILEINSLTGEIIRSIKHPFIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT ++N A+K I EELK+ E EK G+LLEAQR+ +R YD+EML GSC+ Sbjct: 244 PASHYVTDEVSINRALKSISEELKVTAEEFEKNGKLLEAQRIRERTNYDIEMLREIGSCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L PG PP TL +Y P+D + F+DESHV++PQI GMY GD RK L +Y Sbjct: 304 GIENYSRHLNDLPPGAPPYTLLDYFPKDFVTFIDESHVSVPQIRGMYAGDRARKMNLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATP +E E+ + I E I+RPTGL+DP + Sbjct: 364 GFRLPSALDNRPLNFEEFEERMNQLVYVSATPNDYEKERSKE-IAECIVRPTGLIDPKIT 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q+ED+ I + ++L+T LTKRMAEDLT YL E IRV Y+HS+V T+E Sbjct: 423 VKETKGQIEDLIGRIKEKTDKHEKVLVTTLTKRMAEDLTNYLSEVGIRVEYLHSDVDTIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+++I+DLR FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RMKLIKDLRDDVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ +V++YAD +T S++ AI ET RRR+ Q E+N+KH+I P+ + + + + +ED Sbjct: 543 HLGGEVVMYADKMTPSMERAIGETDRRRKIQSEYNEKHHITPKGIVKSTENAMSALSIED 602 Query: 741 AATTNISIDAQQLSLSKKKGK----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ ++++ +K++ + ++ L QM L A NL FE AA++RDEI +LK Sbjct: 603 VNAEDV---VKKITSNKEEFEHDVDKEIELLTTQMKLYAKNLEFELAAKLRDEIDKLK 657 >gi|257465864|ref|ZP_05630175.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC 25563] gi|315917021|ref|ZP_07913261.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC 25563] gi|313690896|gb|EFS27731.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC 25563] Length = 660 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/660 (51%), Positives = 473/660 (71%), Gaps = 11/660 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ Y P+GDQP AI +L+K + + + Q+LLGVTGSGKTFT+A VIE +QRP +++ Sbjct: 1 MFRLCAKYQPTGDQPIAIEKLVKSLERKNRDQVLLGVTGSGKTFTIANVIEKVQRPTLII 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E+K+FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+S++NE+ID++R Sbjct: 61 APNKTLAAQLYQEYKSFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + + + + +L+ L+ +Y+R Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGISRSKLIERLIALRYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378 D+ +RGTFRV GD ++I+PS+LE +R+ +G+D+E ISE + LTG+KI+ N+E I Sbjct: 181 NDMNFVRGTFRVKGDVVDIYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IYA + Y+T L + I+E+ + + + G+LLEAQRL+QR+ YD+EM++ G Sbjct: 240 IYAATQYITEEEDLERIITEIREDQVREVKQFQDSGKLLEAQRLQQRVDYDIEMIKEIGY 299 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD RK TL Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTTLV 359 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRL + +DNRPL+F+E+ TI VSATPG +E++Q +VEQ+IRPTG++DP Sbjct: 360 ENGFRLKAALDNRPLQFDEFRARTGQTIYVSATPGDYEIQQSGSSVVEQLIRPTGILDPF 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R + QV+D+ +EI+ + R+L+T LTK+MAE+LTEY + I+VRYMHS+V T Sbjct: 420 IEVRPTKGQVDDLLEEIHKRVVKKQRVLVTTLTKKMAEELTEYYSDLGIKVRYMHSDVDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+RIEII+ LR G+ DVLVGINLLREGLDIPE LVAIL+ADKEGFLRS+ SLIQTIGRA Sbjct: 480 LDRIEIIKLLRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDP 735 ARNV +VILY D +T S+ LA++ET RRR Q +N H + P+++ ++I E +D Sbjct: 540 ARNVEGRVILYGDVMTDSMALAMEETKRRRAIQENYNLLHGVEPEAIVKEIAEEMIQLDY 599 Query: 736 ILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + E+A + + K+ K H K ++ + L+FE+A +RDE+K L+ Sbjct: 600 GISEEAFSKKSKKKFHSKEEIEKEIAKCHKKIVK-----LSKELDFEQAILVRDEMKLLQ 654 >gi|293380197|ref|ZP_06626279.1| excinuclease ABC subunit B [Lactobacillus crispatus 214-1] gi|290923241|gb|EFE00162.1| excinuclease ABC subunit B [Lactobacillus crispatus 214-1] Length = 681 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/659 (50%), Positives = 467/659 (70%), Gaps = 5/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND +VV+SVSCIYG+G + Y++ ++ + G+ ++ LL LV QY R Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +E+FP+ + A+ + FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYPIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+ I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L+ +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+VRY+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI T RRR+ Q+E NK+H I P+++ + I +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ + + + D L+ K+ K + +L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666 >gi|332292837|ref|YP_004431446.1| excinuclease ABC, B subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332170923|gb|AEE20178.1| excinuclease ABC, B subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 666 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/655 (50%), Positives = 462/655 (70%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP AI L+ G+++ E Q LLGVTGSGKTFT+A VI+ Q+P +V+A Sbjct: 3 FKLESPFKPTGDQPTAIKSLVDGVNANEAYQTLLGVTGSGKTFTVANVIQETQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P + YIEK+ SINE+I++MR Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IV++SVSC+YGIG+ + + I+++K + + LL LV+ Y R Sbjct: 123 STTTSLLSGRRDVIVIASVSCLYGIGNPAEFQKNIIEIKQDQVIARTMLLKKLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FR+ GD++E+FP + D+A+R+ FG++IEEI F P + + I ++I Sbjct: 183 TESEFNHGNFRIKGDTVEVFPGY-ADMAFRIHFFGDEIEEIEAFDPTSAEVIEKYSQLRI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + L A+ I E+L ++ E G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSQDVLQGAINQIGEDLTKQVGFFEGVGKHLEAKRLDERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L ++ P+D L+ VDESHVT+ Q+S MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEEW ++ I VSATP +EL++ +G VEQIIRPTGL+DP V Sbjct: 362 YGFRLPAAMDNRPLKFEEWEAMQNQVIYVSATPADYELQKTEGAYVEQIIRPTGLLDPIV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + RIL+T LTKRMAE+LT+YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEITKVTARNERILVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QTIGRAA Sbjct: 482 ERVEIMQDLRKGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVIDPI 736 RN+N K I+YAD IT+S+Q ID++ RR+KQ+++N KH ++P ++K+ + M + Sbjct: 542 RNINGKAIMYADKITRSMQETIDDSNYRRQKQIDYNTKHGLSPMAIKKSLDNAMTQKEAY 601 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 +E N++ + Q ++ + + ++S RK M AA L+F +AA++RD+IK Sbjct: 602 KIEAEELVNLAAEDAQEYQTRPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIK 656 >gi|84489383|ref|YP_447615.1| excinuclease ABC subunit B [Methanosphaera stadtmanae DSM 3091] gi|121717291|sp|Q2NGT1|UVRB_METST RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|84372702|gb|ABC56972.1| UvrB [Methanosphaera stadtmanae DSM 3091] Length = 649 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/659 (53%), Positives = 455/659 (69%), Gaps = 20/659 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY P GDQP AI L++ K Q L GVTGSGKTFTMA VIE + +P +VM+ Sbjct: 4 FNLYSDYKPLGDQPKAIKSLVEHYKDGIKEQTLEGVTGSGKTFTMANVIEQLDKPTLVMS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +TDT+I+KES+INE+IDR+RH Sbjct: 64 HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVAQTDTFIDKESAINEEIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SLL R+D IVVSSVSCIYGIGS E Y+Q + L+ + ++++L LVK QY R Sbjct: 124 SATQSLLTRDDVIVVSSVSCIYGIGSPEDYAQFTLTLQTQQEISREDILKELVKMQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI IRG FRV GD IEIFP + + A R+ ++G++I+ I + L G I ++ + I+ Sbjct: 184 DIEFIRGQFRVRGDVIEIFPIN-ANYALRIELWGDEIDVIYKIDALKGDIIEELQKVIIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V + TA+ IK+ELK R+ + G+ +EAQR+EQR +D+EML+ G C Sbjct: 243 PAKHFVIAKEKQETAIANIKKELKERVDTFKATGKYVEAQRIEQRTNFDMEMLQEIGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR GE P +L Y P+D L +DESHVT+PQI GMY GD RK L +Y Sbjct: 303 GIENYSMHMNGRKWGETPYSLLRYFPDDYLTIIDESHVTVPQIRGMYEGDRARKENLIQY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPLRF+E+ + + VSATP ++EL + + VEQIIRPTGLVDP Sbjct: 363 GFRLPSAKENRPLRFDEFMRAQNQVLYVSATPAAFELGRSKN-KVEQIIRPTGLVDPEPI 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI R+L+T LTK+MAEDLT+Y + N++ RY+HSE+ TLE Sbjct: 422 VRPIKNQVDDLLGEIRKCVDNNQRVLVTSLTKKMAEDLTDYYIKMNVKARYLHSEISTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII +LR G FD LVG+NLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 482 RTEIIDELRRGDFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSQTSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-----KEKIMEVIDP 735 NVN +VILYAD IT S++ A++ T RR+ Q+ +N HNI P+SV +KI E +D Sbjct: 542 NVNGRVILYADNITDSVRNAVNITKHRRKIQIAYNNDHNITPRSVVRKLKDKKIEEKVDD 601 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I D TT+ ID +K L K+M AA +LNFE+AA++RD I LK Sbjct: 602 IQEIDNITTD-EID------------EIIKELEKEMKQAAKDLNFEKAAKLRDRIMELK 647 >gi|304437272|ref|ZP_07397232.1| excision endonuclease subunit UvrB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369764|gb|EFM23429.1| excision endonuclease subunit UvrB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 691 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/657 (54%), Positives = 462/657 (70%), Gaps = 3/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AIA L GI + Q+LLG TG+GKT+TMAKVIE++QRP +V+A Sbjct: 29 FKVVAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIESVQRPTLVIA 88 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP N V YFVSYYD+YQPEAY+ +TDTYIEK++SIN++ID +RH Sbjct: 89 HNKTLAAQLASEFKSFFPDNYVGYFVSYYDFYQPEAYIAQTDTYIEKDASINDEIDELRH 148 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS ESY +M++ + G ++ ++E+L L+ +Y+R Sbjct: 149 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTITREEILQKLISIRYERN 208 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEIFP+ + R+ MFG+++E I EF TG+ ++ Sbjct: 209 DIAFERGRFRVRGDVIEIFPAGYNNRGVRIEMFGDEVERIIEFDVTTGEVYGERLHSMVF 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + AM I+ EL+ RL L+ EG+LLEAQRLEQR YDLEM++ G C Sbjct: 269 PASHYVTDDEDMKIAMADIRTELEERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 328 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y PED L+ +DESHVT+PQI MY GD RK +L + Sbjct: 329 GIENYSRHLTHRAPGATPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 388 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E++Q Q + +QIIRPTGL+DP VE Sbjct: 389 GFRLPSAFDNRPLTFEEFAARINQIVYVSATPGKYEMQQAQ-QVAQQIIRPTGLLDPEVE 447 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L + R+L+T LTKRMAE+LTEYL E ++VRY+HS++ T+E Sbjct: 448 VRPLAGQIDDLMGEIRLRIGRNERVLVTTLTKRMAENLTEYLREAGVKVRYLHSDIATIE 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR G+FDVLVGINLLREGLD+PE L+AILDADKEGFLRS T+LIQTIGRAAR Sbjct: 508 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAAR 567 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N VI+Y D IT S+Q AIDET RRR Q E+N++H I P+++ + I+ +I+ L+ Sbjct: 568 NAGGHVIMYGDVITGSMQRAIDETERRRTIQQEYNEEHGIVPKTIVKPIVPLIEMTLVAA 627 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ED + + L KK+ + +KSL ++M A+ L FE AA +RD I L+ Sbjct: 628 EDKSPYGKKDGKAKKKLGKKERENLVKSLLREMQQASRALEFERAAELRDMIVELEG 684 >gi|296272434|ref|YP_003655065.1| excinuclease ABC subunit B [Arcobacter nitrofigilis DSM 7299] gi|296096608|gb|ADG92558.1| excinuclease ABC, B subunit [Arcobacter nitrofigilis DSM 7299] Length = 657 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/663 (53%), Positives = 461/663 (69%), Gaps = 20/663 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI +L + I + + LLGVTGSGKT+TMAKVIE Q+P ++M Sbjct: 4 FKVESKYSPAGDQPQAIEKLSESILAGNQYNTLLGVTGSGKTYTMAKVIEKTQKPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN +++RMR Sbjct: 64 HNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINSELERMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IVV+SVS YG+G+ Y M+ +L +G Q+ LL LV YKR Sbjct: 124 SATASLLSFDDVIVVASVSANYGLGNPAEYKSMVQKLSVGFEYSQRTLLMKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I++FP++ +D R+ F +++E IS +T K ++V+ + IY Sbjct: 184 DKFFDRADFRVNGDVIDVFPAYWQDEFIRIEFFADEVESISIHEYMTNVKQKDVQDVTIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + +V L TA+K I+EEL+ RL L+ E RL+E QRL+QR+ +DLEM+E TG C+ Sbjct: 244 SVNPFVVNSENLATAVKKIEEELEDRLAFLKAEDRLVEYQRLKQRVEFDLEMIEGTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG PGE P ++ FE I +D LL VDESHV++PQ GM+ D RK L Sbjct: 304 GIENYARHLTGLEPGETPYSMMDYFEQIGKDFLLIVDESHVSLPQFRGMHAADKSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL F+E+ P + VSATP E ++ EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKAPHYLFVSATPNELE-TSMSSVVAEQIIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI + QVE ++DEI A + R+L+TVLTK+MAE+LT Y + IRV+YMHSE+ Sbjct: 423 TIEIMDSEFQVEKLHDEIKKVAAKNERVLVTVLTKKMAEELTAYYLDLGIRVKYMHSEID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER+EIIR LRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLRSKTSLIQT+GR Sbjct: 483 TLERVEIIRQLRLGEFDVLVGINLLREGLDIPETSLVAILDADKEGFLRSKTSLIQTMGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 ARN N +VIL+A +T S+Q AID T +RRE Q HNKKH I P S +++E D + Sbjct: 543 GARNQNGRVILFAKRVTDSMQFAIDVTNKRREVQEAHNKKHGITPTSTT-RVLE--DNLK 599 Query: 738 LEDAATTNISIDAQQLSLSK------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 LE+ DA L L K + K L L K M A+ +LNFEEA R+RDEI+ Sbjct: 600 LEE-------YDAVALKLEKLDKMPAAERKKMLIELNKAMTKASKDLNFEEAIRLRDEIE 652 Query: 792 RLK 794 ++K Sbjct: 653 KIK 655 >gi|323466934|gb|ADX70621.1| Excision endonuclease subunit UvrB [Lactobacillus helveticus H10] Length = 682 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/659 (50%), Positives = 463/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND IVV+SVS IYG+G + Y++ ++ + G ++ LL LV QY R Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNVLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T L A+K I +E+K ++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFMTNDDQLRRALKAISKEMKDQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN + R+ +T LTK+MAEDLT+YL + I+V+Y+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEHGITPKTIIKPVQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ D L+ + K +K+L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 GDKDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667 >gi|300088152|ref|YP_003758674.1| excinuclease ABC subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527885|gb|ADJ26353.1| excinuclease ABC, B subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 674 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/660 (51%), Positives = 466/660 (70%), Gaps = 6/660 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ+ +D+ GDQP A+ L +G+ + Q LLGVTGSGKTFTMA +I RPA+ Sbjct: 1 MTDFQLVSDFGLMGDQPQAVDALTRGLDEGLRDQTLLGVTGSGKTFTMANIIARTGRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY+EF+ FFPHN+VEYFVSYYDYYQPEAYVP D YIEKES IN++ID+ Sbjct: 61 VISHNKTLAAQLYAEFREFFPHNSVEYFVSYYDYYQPEAYVPSRDMYIEKESDINDEIDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RH+ATR+LL R D I+V+SVSCIYG+G E Y + I+ L+ G S + E++ LV QY Sbjct: 121 LRHAATRALLSRRDVIIVASVSCIYGLGEPEEYMRFILNLEKGVSYRRDEIVRKLVDMQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D+ RG FR+ GD++E+ P++ E+ A RV FG++IE I PLTG+ + ++ I Sbjct: 181 ERNDMDFTRGKFRLRGDTLELRPAY-EETAIRVEFFGDEIERILRIDPLTGEFLEDIRII 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY H+VT L A++ I++EL L+++G+LLEA RLEQR YDLEMLE G Sbjct: 240 DIYPAKHFVTSPEKLAKALQGIRDELAQHTAMLKEQGKLLEAARLEQRTNYDLEMLENAG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L R G P TL +Y PED +LFVDESH+++PQI GMY GD RK TL Sbjct: 300 YCSGVENYSRHLALRPAGSTPWTLLDYFPEDFILFVDESHMSLPQIRGMYNGDRARKETL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL F E+ + VSATPG +E E VEQ++RPTGL++P Sbjct: 360 VDYGFRLPSALDNRPLNFSEFRQRVGQAVYVSATPGPYEREHS-AQTVEQVVRPTGLLEP 418 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E++ Q++D+ ++I L +G R L+T LTK++AE L EY+ E ++ +Y+HSEV+ Sbjct: 419 IIEVKPTTGQIDDLLEQIKLRVARGERCLVTTLTKKLAEKLAEYITEAGVKTQYLHSEVE 478 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T ER+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEGFLRS+ +LIQT+GR Sbjct: 479 TFERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSEWALIQTMGR 538 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR+V+ +VI+YADTIT S++ AI E RRRE Q +N++H I PQ +++ I ++ + + Sbjct: 539 AARHVDGRVIMYADTITGSMERAIAEVKRRREIQEAYNQEHGITPQGIRKAIKDITERVR 598 Query: 738 LEDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++A S DA + ++LSK++ ++ L QM +A ++FE AA +RD I LK Sbjct: 599 TAESAVVAES-DADSYKSMALSKEELARLIRELETQMKKSAKLMDFERAALLRDRIIELK 657 >gi|289432332|ref|YP_003462205.1| excinuclease ABC subunit B [Dehalococcoides sp. GT] gi|288946052|gb|ADC73749.1| excinuclease ABC, B subunit [Dehalococcoides sp. GT] Length = 664 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/657 (51%), Positives = 463/657 (70%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ +GDQP A+ +L +G+ S Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 4 FKIVSDFALTGDQPQAVEKLAEGLVSGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID++RH Sbjct: 64 HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + TR+L ER D ++V+SVSCIYG+G E Y ++ LK G S + +L LV QY+R Sbjct: 124 ATTRALFERRDVVIVASVSCIYGLGEPEEYHSFVLPLKKGQSFRRDLILRRLVDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FR+ GD++EI P++ E++A RV FG++IE I P++G+ + ++E I IY Sbjct: 184 DLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIEEINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + A+K I+ EL+ RL ELE EG++LEA RL+QR YDLEM+E G C Sbjct: 243 PAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G P TL +Y PED LL VDESH+++PQI GMY GD RK TL +Y Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F+E+ I VSATPG +E E +VEQ++RPTGL++P + Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEPVMT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +E+ + R+L+T LTK+M+E L +YL E ++ Y+HSEV TLE Sbjct: 422 VKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+ +LIQT+GRAAR Sbjct: 482 RIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +VI+YAD IT S+Q A+DE RRR+ Q ++N+ HNI PQ +++ I ++ + I Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + T +S + + + ++ A L K L QM AA NL FE AA IRD + L+++ Sbjct: 599 SVTAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655 >gi|147669063|ref|YP_001213881.1| excinuclease ABC subunit B [Dehalococcoides sp. BAV1] gi|146270011|gb|ABQ17003.1| excinuclease ABC, B subunit [Dehalococcoides sp. BAV1] Length = 664 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/657 (51%), Positives = 463/657 (70%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ +GDQP A+ +L +G+ Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 4 FKIVSDFALTGDQPQAVEKLAEGLVRGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID++RH Sbjct: 64 HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+L ER D ++V+SVSCIYG+G E Y ++ LK G S + +L LV QY+R Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSFRRDLILRRLVDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FR+ GD++EI P++ E++A RV FG++IE I P++G+ + ++E I IY Sbjct: 184 DLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIEEINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + A+K I+ EL+ RL ELE EG++LEA RL+QR YDLEM+E G C Sbjct: 243 PAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G P TL +Y PED LL VDESH+++PQI GMY GD RK TL +Y Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F+E+ I VSATPG +E E +VEQ++RPTGL++P + Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEPVMT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +E+ + R+L+T LTK+M+E L +YL E ++ Y+HSEV TLE Sbjct: 422 VKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+ +LIQT+GRAAR Sbjct: 482 RIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +VI+YAD IT S+Q A+DE RRR+ Q ++N+ HNI PQ +++ I ++ + I Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + T +S + + + ++ A L K L QM AA NL FE AA IRD + L+++ Sbjct: 599 SVTAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655 >gi|224475900|ref|YP_002633506.1| excinuclease ABC subunit B [Staphylococcus carnosus subsp. carnosus TM300] gi|222420507|emb|CAL27321.1| excinuclease ABC subunit B [Staphylococcus carnosus subsp. carnosus TM300] Length = 660 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/655 (53%), Positives = 465/655 (70%), Gaps = 2/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQPAAI +L +GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +V+A Sbjct: 6 FKIVSDYEPQGDQPAAIKELTEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+EFK FP N VEYFVS+YDYYQPEAYVP TDT+IEK+++IN++ID++RH Sbjct: 66 HNKTLAGQLYNEFKELFPENRVEYFVSFYDYYQPEAYVPSTDTFIEKDATINDEIDQLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER+D I+V+SVS I+G+G+ E YS ++V ++ G +++ + L LV QY R Sbjct: 126 SATSSLFERDDVIIVASVSSIFGLGNPEEYSDLVVNIREGMEMDRSQFLRDLVDIQYTRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +E+FP+ E++ RV FG++I+ ISE LTG+ +R E I+ Sbjct: 186 DIDFKRGTFRVRGDVVEVFPASREEICIRVEFFGDEIDRISEVNYLTGEVLRQREHFSIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 246 PASHYVTRDEKLKLAIERIEKELEERLKELRSENKLLEAQRLEQRTNYDLEMMREMGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +LT R G P TL +Y +D L+ VDESHVT+PQI GMY GD RK L ++ Sbjct: 306 GIENYSVHLTLRPIGSTPYTLLDYFGDDWLVMVDESHVTLPQIRGMYNGDRARKQVLIDH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ + VSATPG +ELE + EQIIRPTGL+DP ++ Sbjct: 366 GFRLPSAIDNRPLTFEEFEEKAKQLVYVSATPGPYELEHTDE-MTEQIIRPTGLLDPKID 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R+L+T LTK+M+EDLT YL E I+V Y+HSE+KTLE Sbjct: 425 VRPTKNQIDDLLSEIQDRVDKNERVLITTLTKKMSEDLTTYLKEAGIKVNYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +D +VGINLLREG+DIPE LV ILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 485 RIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSERSLVQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VI+YAD IT S++ AIDET RRR+ Q E+N++H I PQ++ +KI +VI +E Sbjct: 545 NEHGEVIMYADKITDSMKFAIDETERRRKIQNEYNEEHGITPQTIHKKIHDVISAT-VET 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L+KK+ + + ++ K+M AA +L+FE A +RD + LK+ Sbjct: 604 KEENEKDQKVVPKKLTKKEREKTIANIEKEMKKAAKDLDFERATELRDMLFELKA 658 >gi|126663561|ref|ZP_01734558.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38] gi|126624509|gb|EAZ95200.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38] Length = 662 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/658 (51%), Positives = 464/658 (70%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI +L KGI + EK Q LLGVTGSGKTFT+A V++ +Q+P +V+A Sbjct: 3 FQVVSEYKPTGDQPQAIEKLSKGIVNGEKYQTLLGVTGSGKTFTVANVVQEVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+N+V+YFVSYYDYYQPEA++P T TYIEK+ SINE+++++R Sbjct: 63 HNKTLAAQLYSEFKQFFPNNSVQYFVSYYDYYQPEAFIPVTGTYIEKDLSINEELEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D IV+SSVSC+YGIG+ + + +V L+ G + + +LL LV+ Y R Sbjct: 123 STTSALLSGRRDIIVISSVSCLYGIGNPVEFQKNVVNLETGQQISRTKLLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FR+ GD +EIFPS+ D +R+ FG++IEEI F T Q + E + I Sbjct: 183 TEADFNPGNFRIKGDIVEIFPSY-GDEPFRIHFFGDEIEEIEAFDARTAQVLERYEKLSI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQNAIWAIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTI Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +ELE+ +G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELEKTEGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + Q++D+ +EI L + R+L+T LTKRMAE+L +YL + IR RY+HS+V TL Sbjct: 422 EIRPSANQIDDLIEEIQLRCEADERVLVTTLTKRMAEELAKYLTKVAIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K I+YAD ITKS+Q IDETT RREKQ ++N KH + P+++ + + + + Sbjct: 542 RNVNGKAIMYADKITKSMQKTIDETTYRREKQTKYNTKHGLEPKALNKSLGSALSGNSVS 601 Query: 740 DAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ A + L LSK + + ++ +RK M AA L+F +AA++RD+IK L+ Sbjct: 602 TGYFEKEALKAAEPESLYLSKPEIEKKIRDMRKLMEKAAKELDFMQAAKLRDDIKALQ 659 >gi|300775460|ref|ZP_07085322.1| excision endonuclease subunit UvrB [Chryseobacterium gleum ATCC 35910] gi|300506200|gb|EFK37336.1| excision endonuclease subunit UvrB [Chryseobacterium gleum ATCC 35910] Length = 663 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/669 (51%), Positives = 468/669 (69%), Gaps = 22/669 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q++Y P+GDQP AI +L +GI EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A Sbjct: 3 FKLQSEYKPTGDQPQAIEKLTEGIEIGEKYQTLLGVTGSGKTFTVANVIQNVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+ T TYIEK+ SINE+++++R Sbjct: 63 HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIATTGTYIEKDLSINEEVEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL R D ++V+SVSCIYGIG+ + + ++ + IG+ V + LL SLV Y R Sbjct: 123 SATASLLSGRRDVLIVASVSCIYGIGNPTEFHKSLISIAIGEKVTRTALLHSLVNALYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD I++FP++ D A R+ FG++IE+I F PLTG N + I+I Sbjct: 183 TLNEFQRGTFRVKGDVIDVFPAY-ADNAIRIQFFGDEIEKIQSFDPLTGNVESNFDQIQI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + TLN A++ I++++ ++ + LEA+RL++R DLEM++ G C Sbjct: 242 YPANLFVTSKETLNGAIREIQDDMVKQVDFFNSIEKPLEAKRLQERTELDLEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRLPGSRPFCLIDYFPKDFLMVIDESHVTVPQVHAMYGGDRSRKEALVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ I VSATP +ELE+ G +EQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELEKTGGAYIEQIIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ +EI A R+L+T LTK+MAE+LT+Y + IR RY+HS+V+TL Sbjct: 422 EVRPTLNQIDDLMEEIQKRADADERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVETL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I++DLRLG FDVL+G+NLLREGLD+PE LVAILDADKEG LRS+ S+IQT+GRAA Sbjct: 482 ERIQIMQDLRLGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN K I+YAD ITKS+Q +DET RR KQ+++N++H + P+++ +KI E + Sbjct: 542 RNVNGKAIMYADKITKSMQATLDETEYRRAKQMKYNEEHGLQPKALNKKISENLVGRSKD 601 Query: 734 -------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 +L+ A T S ++ + + +K+M AA NL+F +AA++ Sbjct: 602 FPDEKYTQKEILQKVAETKASYASEDID-------KMIAQKQKEMEAAAKNLDFIKAAKL 654 Query: 787 RDEIKRLKS 795 RDEI+ LK+ Sbjct: 655 RDEIEALKA 663 >gi|315023810|gb|EFT36812.1| excinuclease ABC subunit B [Riemerella anatipestifer RA-YM] Length = 666 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/672 (50%), Positives = 472/672 (70%), Gaps = 23/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L+ GI + Q LLGVTGSGKTFT+A V+ +QRP IV+A Sbjct: 3 FKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+ T TYIEK+ SINE+++++R Sbjct: 63 HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL R D ++V+SVSCIYGIG+ +++ +++L++ + + +LL LV Y R Sbjct: 123 SATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIELELQSKISRTDLLHKLVNALYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +RG+FRV GD I+IFP++ D A R+ FGN+I++I F P++G + + + I I Sbjct: 183 AVNEFVRGSFRVKGDVIDIFPAY-ADNAIRIRFFGNEIDKIQSFDPISGSIMGDFDKINI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + T+N+A++ I+++L ++ + G+ LEA+RL++R DLEM++ G C Sbjct: 242 YPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY+ GRNPG P L +Y P D L+ +DESHVTIPQ+ MY GD RK L E Sbjct: 302 SGIENYSRYMDGRNPGSRPFCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ I VSATP +ELE+ QG VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELEKTQGEYVEQIIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ +EI A++ R+L+T LTK+MAE+LT+Y + IR RY+HS+V TL Sbjct: 422 EVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I++DLR G FDVLVG+NLLREGLD+PE LVAILDADKEG LRS+ S+IQT+GRAA Sbjct: 482 ERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732 RN+N K I+YAD +TKS+Q IDET RREKQ+ +N+ + + PQ + +KI +V Sbjct: 542 RNINGKAIMYADKMTKSMQATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPD 601 Query: 733 ------IDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I +++ A T +S +A+ L + + +KQM AA L+F AA+ Sbjct: 602 FPKQEYIQKEIVKQVAETKVSYGNAEDL-------EKIIAEKQKQMEAAAKQLDFILAAK 654 Query: 786 IRDEIKRLKSSP 797 +RDEIK LK +P Sbjct: 655 LRDEIKALKGTP 666 >gi|163782904|ref|ZP_02177900.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1] gi|159882025|gb|EDP75533.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1] Length = 664 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/655 (51%), Positives = 458/655 (69%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++T+ P+GDQP AI +LL + K Q+LLG TG+GKT+T+A VIE +P +V+ Sbjct: 8 FCLKTNLKPAGDQPKAIEELLDNLEKGVKEQVLLGATGTGKTYTIANVIEKHGKPTLVVV 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQLY EFK FP NAVE+F+SYYDYYQPEAY+P D YIEK++SINE ++R RH Sbjct: 68 HNKILAAQLYREFKELFPDNAVEFFISYYDYYQPEAYIPEKDLYIEKDASINEVLERYRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D IVV+SVSCIYG+GS E Y M +++ G + + + LV+ Y+R Sbjct: 128 SATISVLERRDVIVVASVSCIYGLGSPEHYENMRIRVSKGAHLNLTKFVRKLVELGYERN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TF V GD++E+ PS ED R+ ++ +++E I+ L ++ +E + + Sbjct: 188 DYAYKRATFSVKGDALEVIPSEAEDYTVRIELWDDEVERIAVIDTLNRHHVKELEEVSFF 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ PRPT+ +A++ I+ +L+ R+ +K+G+ +EAQRL QR YDLEM+ G C+ Sbjct: 248 PASHYIAPRPTVESALEEIERDLRERVDWFKKQGKQVEAQRLYQRTMYDLEMIRELGHCK 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y PED LL VDESH+TIPQI MY GD RK L EY Sbjct: 308 GIENYSRYFDGREPGEPPFTLLDYFPEDFLLVVDESHMTIPQIRAMYNGDRSRKEKLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+RLPS +DNRPL+FEE+ + VSATP WE+E+ +GI+VEQI+RPTGLVDP VE Sbjct: 368 GWRLPSALDNRPLKFEEFLERLNQVVYVSATPSDWEIERSKGIVVEQIVRPTGLVDPEVE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q+ED+ EI ++ R L+ TKR+AE++ +YL ER I+ YMHSE+ +E Sbjct: 428 VRPTRNQLEDLIREIQERVRRDERALVLTTTKRLAEEVADYLTERKIKATYMHSELDAIE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R I+++LR G V+VG+NLLREGLD+PE LVAIL+ADKEGFLRS TSLIQTIGRAAR Sbjct: 488 RARIVKELREGSVHVVVGVNLLREGLDLPEVSLVAILEADKEGFLRSYTSLIQTIGRAAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K ILYAD ITKS++ AI+ET RRR+KQ ++N++H I P+S+ + I E+ + LE+ Sbjct: 548 NVNGKAILYADRITKSMERAIEETNRRRKKQRKYNEEHGITPKSIVKPIKEL---LALEE 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + + +++ ++ L K+M AA N FE+AA++RDEIK L++ Sbjct: 605 LDYVKLPLKLPKGIKTEEDLIKRIEKLEKEMWEAAKNWEFEKAAKLRDEIKSLRN 659 >gi|150024988|ref|YP_001295814.1| excinuclease ABC subunit B [Flavobacterium psychrophilum JIP02/86] gi|149771529|emb|CAL42998.1| Excinuclease ABC, B subunit [Flavobacterium psychrophilum JIP02/86] Length = 663 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/659 (52%), Positives = 469/659 (71%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+Q+DY P GDQP AI +L++GI EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A Sbjct: 3 FQVQSDYKPKGDQPQAIEKLVQGITDNEKYQTLLGVTGSGKTFTVANVIQEVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P T +IEK+ SINE++++MR Sbjct: 63 HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKMRM 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S SLL R D IV+SSVSC+YGIG+ + + ++ ++ G + + +LL LV+ Y R Sbjct: 123 STVSSLLSGRRDIIVISSVSCLYGIGNPVEFQKNVIPIEKGQIISRTKLLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ + G FR+ GD+++I+PS+ +D A+R+ FG++IEEI F T Q I E + I Sbjct: 183 TEMDFMPGNFRIKGDTVDIYPSYADD-AFRIHFFGDEIEEIESFDVKTTQVIEKFEKLTI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQNAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR+ G P L +Y P+D L+ VDESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRSTGTRPFCLLDYFPKDYLMVVDESHVTLSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ I VSATP +EL++ G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELQKTDGVVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + Q++D+ +EI + A+ R+L+T LTKRMAE+L +YL + NIR RY+HSEV TL Sbjct: 422 EIRPSLNQIDDLIEEIQVRAEIDERVLVTTLTKRMAEELAKYLTKVNIRCRYIHSEVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QTIGRAA Sbjct: 482 ERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K I+YAD IT S+Q IDET RREKQ+ N +NI PQ++ +KI L Sbjct: 542 RNLNGKAIMYADKITASMQKTIDETNYRREKQINFNIANNIIPQALNKKIESAFTKNTLV 601 Query: 740 DA----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D+ + N++ + + LSK + + ++ RK M AA +L+F +AA++RDEIK L+ Sbjct: 602 DSELGYTSGNMAAEPETEYLSKPEIEKRIRDKRKAMEKAAKDLDFMQAAKLRDEIKDLQ 660 >gi|33241258|ref|NP_876200.1| excinuclease ABC subunit B [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81835781|sp|Q7V9M1|UVRB_PROMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|33238788|gb|AAQ00853.1| Helicase subunit of the DNA excision repair complex [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 677 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/673 (51%), Positives = 468/673 (69%), Gaps = 23/673 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + ++ Y P GDQP AI +L+ G++S + Q LLG TG+GKTFT+A VI RPA+V+A Sbjct: 4 YYLKAPYQPKGDQPKAITKLVDGVNSGREYQTLLGATGTGKTFTIANVIAKTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER+D IVV+S+SCIYG+G Y + V+ K+G+ + ++ L LV QY R Sbjct: 124 SATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFKVGNEINLRKSLRELVANQYFRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FRV GD +EI P++ +D R+ +FG++IE I P+TG+ + ++ I IY Sbjct: 184 DFDIGRGKFRVKGDVLEIGPAY-DDRLVRIELFGDEIEAIRYVDPITGEILDSLNCISIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L TA+ I++ELK +L KEG+LLEAQRLEQR YDLEML G C Sbjct: 243 PAKHFVTPKERLVTAIDDIQKELKEQLDFFNKEGKLLEAQRLEQRTKYDLEMLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR G PP L +Y P+D LL +DESHVT Q+ MY GD RK L E+ Sbjct: 303 GVENYARHLSGREAGSPPECLIDYFPKDWLLVIDESHVTCSQLLAMYNGDQSRKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ +E+ T+ +SATPG+WELE G I+EQ+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKSQEFWNKANQTVFISATPGNWELEISSGAIIEQVIRPTGVLDPLVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QVED+ DEI +++ R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E Sbjct: 423 VRPTKGQVEDLLDEIRERSRKKQRVLITTLTKRMAEDLTDYLSENDVRVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LV ILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IMEV- 732 ++ K +LYAD T S++ AI+ET RRR Q +N+++NI P +K +E+ Sbjct: 543 HIEGKALLYADNFTDSMKKAIEETERRRAIQESYNQQNNIVPMPAGKKANNSILSFLELS 602 Query: 733 -------IDPILLEDAATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFE 781 ID L+E A +D + + + + +L L +M +A +L+FE Sbjct: 603 RRVQKDGIDNDLVEIAGNV---VDEFKFNNNSELAIENLPQLIDELETKMKKSAKDLDFE 659 Query: 782 EAARIRDEIKRLK 794 AA++RD+I +L+ Sbjct: 660 NAAKLRDKIHQLR 672 >gi|116071728|ref|ZP_01468996.1| excinuclease ABC subunit B [Synechococcus sp. BL107] gi|116065351|gb|EAU71109.1| excinuclease ABC subunit B [Synechococcus sp. BL107] Length = 679 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/671 (51%), Positives = 454/671 (67%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P GDQP AI QL+ G++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 FDLTAPYSPKGDQPTAITQLVDGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G ++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGATLNIRGQLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ +D R+ +FG+++E I P TG+ ++++E + IY Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEEVNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L+ A+K I+ EL+ RL L EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKDRLDDAIKAIRTELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLDQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREAGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLVDH 362 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ E W R T+ VSATPG+WELE G + +Q+IRPTG++DP + Sbjct: 363 GFRLPSAADNRPLKGAEFWEKAR-QTVFVSATPGNWELEVSTGQVAQQVIRPTGVLDPLI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E RVRY+HSE+ ++ Sbjct: 422 EVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENGTRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R+V K +LYA+ +T S+ AID T +RR+ Q +N++HNI P + +K I L Sbjct: 542 RHVEGKALLYAENMTDSMLKAIDVTEKRRKIQQTYNEEHNIVPTAAGKKASNSILSFLEL 601 Query: 740 DAATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEA 783 DA + ++ K +A + L +M AA L+FEEA Sbjct: 602 SRKLKQDGPDADLVEVAGKAVRALENDADAGLALEALPELIDQLESKMKDAAKKLDFEEA 661 Query: 784 ARIRDEIKRLK 794 A +RD +K+L+ Sbjct: 662 ANLRDRVKQLR 672 >gi|163790858|ref|ZP_02185283.1| excinuclease ABC subunit B [Carnobacterium sp. AT7] gi|159873926|gb|EDP68005.1| excinuclease ABC subunit B [Carnobacterium sp. AT7] Length = 664 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/650 (53%), Positives = 462/650 (71%), Gaps = 1/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQPAAI +L+ GI S K Q LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 6 FELVSKYQPSGDQPAAIKKLIAGIESGTKEQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEKESS+N++ID++RH Sbjct: 66 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKESSVNDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D IVV+SVSCIYG+ + E Y ++ L++G + + E+L LV Q++R Sbjct: 126 SATSALLERRDVIVVASVSCIYGLVNPEDYRDHVLSLRVGAEMNRDEMLRRLVDMQFERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIF + + A RV FG++I+ I E LTG+ +V+ + I+ Sbjct: 186 DIDFQRGRFRVRGDVVEIFLASRDSEAIRVEFFGDEIDRIREVDVLTGEVKADVQHVPIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+V +A+K I+EEL+ RL EL E +L+EAQRLEQR YDLEML G C Sbjct: 246 PATHFVANDEQTRSAIKNIQEELEERLKELRAEDKLIEAQRLEQRTNYDLEMLLEMGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P TL ++ P+D L+ +DESH+T+ QI GMY GD RK L +Y Sbjct: 306 GIENYSRHMDGRKPGEAPYTLIDFFPDDFLIVIDESHITMSQIRGMYNGDRARKQQLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLRLEEFENHVNQIMYISATPGPYELERAPEVI-EQIIRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EIN +++ R+ +T LTK+M+EDLT+YL E I+V Y+HSE+KTLE Sbjct: 425 VRPIKGQIDDLIGEINERSEKNERVFITTLTKKMSEDLTDYLKEVGIKVAYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRDLRLG +DVL+GINLLREG+D+PE LV ILDADKEGFLRS+ SL+QTIGRAAR Sbjct: 485 RTEIIRDLRLGVYDVLIGINLLREGIDVPEVSLVIILDADKEGFLRSERSLVQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI+YAD IT S++ AI ET RRRE Q E+N+KH I P+++ + I ++I + Sbjct: 545 NENGRVIMYADRITDSMRAAISETGRRRETQEEYNEKHGITPKTIIKDIRDLISITSVVK 604 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 S +++ + + L +M +AA LNFE+AA +RD + Sbjct: 605 GDDEGASGLENIAKMTRAQRLELIDGLELEMKVAAKELNFEKAANLRDMV 654 >gi|88802767|ref|ZP_01118294.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P] gi|88781625|gb|EAR12803.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P] Length = 662 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/664 (51%), Positives = 469/664 (70%), Gaps = 13/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L GI++ EK Q LLGVTGSGKTFT+A VI+ +++P +V+A Sbjct: 3 FKLVSEFSPTGDQPQAIQELSDGINTGEKFQTLLGVTGSGKTFTVANVIQEVRKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T TYIEK+ SINE I+R+R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVTGTYIEKDLSINEDIERLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +V++SVSC+YGIG+ + + ++ +++G + + + L LV+ Y R Sbjct: 123 STTSSLLSGRRDVLVIASVSCLYGIGNPTEFKKNVIPVQVGQLISRTKFLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + I GTF+V GD + I+PS+ D +R+ FG+++EEI F + I E + I Sbjct: 183 TEHEIKSGTFKVKGDVVTIYPSY-GDNGYRIHFFGDEVEEIELFDLESNAIINTFEELSI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ +I+E++ ++ E+ GR LEA+R+++R +DLEM+ G C Sbjct: 242 YPANLFVTSPDVLQNAIHHIQEDMVKQVAYFEEIGRSLEAKRIKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR+PG P L +Y P+D L+ +DESHVT+PQ MY GD RK L + Sbjct: 302 SGIENYSRYLDGRDPGTRPFCLLDYFPDDYLMIIDESHVTVPQTHAMYGGDRSRKENLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ TI VSATP +EL++ +G+ VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAIQNQTIFVSATPADYELQKTEGVFVEQIIRPTGLLDPMI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LT+YL NIR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQIRIEKDERTLVTTLTKRMAEELTKYLTRVNIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SL QTIGRAA Sbjct: 482 ERVEILQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN ILYAD +TKS+Q IDET RRREKQ+ +N +N+ P +K+K ID L + Sbjct: 542 RNVNGLAILYADKMTKSMQKTIDETDRRREKQIAYNTANNMVPTQIKKK----IDDTLTK 597 Query: 740 DAATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 A ++ +A+Q++ L K++ + ++ RKQM AA L+F AA++RDEI Sbjct: 598 TAVSSYHYDNAKQVAAEQDLQYLPKEEIEKRIRDKRKQMEAAAKELDFVVAAKLRDEIAL 657 Query: 793 LKSS 796 LK S Sbjct: 658 LKES 661 >gi|91215169|ref|ZP_01252141.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755] gi|91186774|gb|EAS73145.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755] Length = 668 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/666 (51%), Positives = 468/666 (70%), Gaps = 20/666 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++D+ P+GDQP AI +L+KG+H+ E+ Q LLGVTGSGKTFTMA V+E +QRP +V+A Sbjct: 3 FTLKSDFKPAGDQPQAIDKLVKGLHNNERYQTLLGVTGSGKTFTMANVVEEVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP +AVEYFVSYYDYYQPEA++P + TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKAFFPDSAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + ++ +++ + + +LL LV+ Y R Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPAEFQKNVISIEVDQQISRTKLLQRLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + RG FR+ GD++++FP + D A+R+ FG++IEEI F T + + + + I Sbjct: 183 TEALFNRGNFRIKGDTLDVFPGY-ADHAYRIHFFGDEIEEIEAFDVETKEVMAKYDKLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT LN A+ I +L ++ + G+ LEA+R+E+R +DLEM++ G C Sbjct: 242 YPANIFVTSPDILNQAIDQIAIDLGKQIEYFKDIGKPLEAKRIEERTNFDLEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTIPQ+ MY GD RK L + Sbjct: 302 SGIENYSRYLDGRKPGTRPFCLIDYFPDDFLMIVDESHVTIPQVGAMYGGDRSRKENLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPLR EE+ L+ + VSATP +EL++ G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLRLEEYEALQNQVVYVSATPADYELQKSGGVVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EIN+ + RIL+T LTKRMAE+L++YL IR RY+HS++ TL Sbjct: 422 EVRPSQNQIDDLIEEINIRVDKDQRILVTTLTKRMAEELSKYLTRVKIRTRYIHSDIDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS +L QTIGRAA Sbjct: 482 ERVEIMSDLRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRTLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---------- 729 R++ K ILYAD IT S+Q +D+T RR+KQ+++N KHNI PQ+VK+ + Sbjct: 542 RHLEGKGILYADKITVSMQKTMDQTDYRRQKQIDYNIKHNITPQAVKKSLDSALSGKKKE 601 Query: 730 -MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 EVI+ LE AA ++ + S+ K + +RK M AA +L+F EAAR RD Sbjct: 602 PYEVIEMPTLE-AAEEAVA------NYSESDLKKRMTKVRKSMEKAAKDLDFMEAARFRD 654 Query: 789 EIKRLK 794 E+K L+ Sbjct: 655 ELKMLQ 660 >gi|238927286|ref|ZP_04659046.1| excision endonuclease subunit B [Selenomonas flueggei ATCC 43531] gi|238884873|gb|EEQ48511.1| excision endonuclease subunit B [Selenomonas flueggei ATCC 43531] Length = 680 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/657 (54%), Positives = 461/657 (70%), Gaps = 3/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AIA L GI + Q+LLG TG+GKT+TMAKVIE +QRP +V+A Sbjct: 18 FKVVAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP N V YFVSYYD+YQPEAY+ +TDTYIEK++SIN++ID +RH Sbjct: 78 HNKTLAAQLASEFKSFFPDNYVGYFVSYYDFYQPEAYIAQTDTYIEKDASINDEIDELRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS ESY +M++ + G ++ ++E+L L+ +Y+R Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTITREEILQKLISIRYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEIFP+ + R+ MFG+++E I EF TG+ ++ Sbjct: 198 DIAFERGRFRVRGDVIEIFPAGYNNRGVRIEMFGDEVERIIEFDVTTGEVYGERLHSMVF 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + AM I+ EL+ RL L+ EG+LLEAQRLEQR YDLEM++ G C Sbjct: 258 PASHYVTDDEDMKIAMADIRTELEERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R PG P TL +Y PED L+ +DESHVT+PQI MY GD RK +L + Sbjct: 318 GIENYSRHLTHRAPGATPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E++Q Q + +QIIRPTGL+DP VE Sbjct: 378 GFRLPSAFDNRPLTFEEFAARINQIVYVSATPGKYEMQQAQ-QVAQQIIRPTGLLDPEVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L + R+L+T LTKRMAE+LTEYL E ++VRY+HS++ T+E Sbjct: 437 VRPLAGQIDDLMGEIRLRIGRNERVLVTTLTKRMAENLTEYLREAGVKVRYLHSDIATIE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR G+FDVLVGINLLREGLD+PE L+AILDADKEGFLRS T+LIQTIGRAAR Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738 N VI+Y D IT S+Q AIDET RRR Q E+N++H I P+++ + I+ +I+ L+ Sbjct: 557 NAGGHVIMYGDVITGSMQRAIDETERRRAIQQEYNEEHGIVPKTIVKPIVPLIEMTLVAA 616 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ED + + L KK+ + +KSL ++M A+ L FE AA +RD I L+ Sbjct: 617 EDKSPYGKKDGKAKKKLGKKERENLVKSLLREMRQASRALEFERAAELRDMIVELEG 673 >gi|189485388|ref|YP_001956329.1| UvrABC system protein B [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287347|dbj|BAG13868.1| UvrABC system protein B [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 672 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/663 (51%), Positives = 468/663 (70%), Gaps = 9/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L + + Q+LLGVTGSGKTF MA VIE +Q+P ++++ Sbjct: 5 FKLISKFKPSGDQPQAIDKLYHNYLNNKNSQILLGVTGSGKTFVMASVIEKLQKPTLIIS 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILAAQ Y+EFK FFP+N+VEYF+SYYDYYQPEAY+P +DTYIEK++SIN+ IDR+R Sbjct: 65 PNKILAAQTYAEFKAFFPNNSVEYFISYYDYYQPEAYIPSSDTYIEKDASINDHIDRLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT S+LER D IVV+SVSCIY +GS + Y M V++ G LL+ L+ +Y+R Sbjct: 125 KATTSILERKDVIVVASVSCIYNLGSPKDYQNMCVEIIAGKEKTISLLLTELIASRYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ RG FRV GD++EIFP++LE A ++ G+ +E I EF P+TG+ I + IY Sbjct: 185 EVEFKRGKFRVKGDTVEIFPAYLE-TAVKIEFCGDTVERIKEFNPVTGEVISKKDKAYIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VT + ++ A+K I+ EL RL L+ + + LEAQRLEQR YD+EML+ TGSC Sbjct: 244 PAKLFVTDKYKVDKALKTIQIELNTRLEVLKSQNKFLEAQRLEQRTKYDIEMLKETGSCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+L+G G P TL +Y +D L+ DESH+++PQI GMY GD RK TL Sbjct: 304 GIENYSRHLSGGLSGAKPTTLIDYFVQENDDFLIITDESHISLPQIRGMYEGDRSRKQTL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS +DNRPL+F+E+ + ++VSATPG++EL + + IV+ IIRPTGLVDP Sbjct: 364 VDFGFRLPSALDNRPLKFQEFEKVIRKFMMVSATPGTYELNRSKKYIVDLIIRPTGLVDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + IR Q++D+ EI ++ R L+T LTK+M+EDL YL E+ +V Y+HSE+ Sbjct: 424 EIVIRPISGQIQDLMQEIRKNVEKKQRTLVTTLTKKMSEDLAAYLKEKGFKVEYLHSEID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TL RIEI+++LRLGKFDVLVGINLLREGLD+PE LV +LDADKEGFLRS+ +LIQ GR Sbjct: 484 TLTRIEILKNLRLGKFDVLVGINLLREGLDLPEVSLVVVLDADKEGFLRSEPTLIQICGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN++ +VI YADT+T S+Q A+ E RRR+KQLEHNKK+NI P+S+ + + E+ + Sbjct: 544 AARNIDGRVIFYADTVTGSMQRALREMNRRRDKQLEHNKKNNIKPKSIIKAVHELDEFRN 603 Query: 738 LEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKR 792 L + N + +QL +++ K +K + QM +ADNL+FE AA +RD E+K Sbjct: 604 LSREESMNHIVAEEQLNYNITPKNIGNIIKEVELQMRESADNLDFESAAALRDRMLELKN 663 Query: 793 LKS 795 +KS Sbjct: 664 MKS 666 >gi|24213349|ref|NP_710830.1| excinuclease ABC subunit B [Leptospira interrogans serovar Lai str. 56601] gi|45658769|ref|YP_002855.1| excinuclease ABC subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59799051|sp|Q72N95|UVRB_LEPIC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|59799069|sp|Q8F8A9|UVRB_LEPIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|24194097|gb|AAN47848.1| excinuclease ABC subunit B [Leptospira interrogans serovar Lai str. 56601] gi|45602013|gb|AAS71492.1| nucleotide excision repair subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 666 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/654 (52%), Positives = 457/654 (69%), Gaps = 4/654 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F++ + Y P+GDQ AI + EK L+GVTGSGKTFTMA+VI+ + P +V Sbjct: 3 SVFKIHSAYQPAGDQVKAIQNIADSFQKGEKKVTLVGVTGSGKTFTMAQVIQNLGLPTLV 62 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 ++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE+ID++ Sbjct: 63 LSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKL 122 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT SLLER D ++VSSVSCIYG+GS E Y+ +V LK+GD++E+ ++ L+ QY Sbjct: 123 RLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVALKVGDTIERDTVIRKLLHIQYN 182 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ RG FRV GDSIEI+P++ D R+ FG++I+ IS P+T Q I +E Sbjct: 183 RNDLDFSRGNFRVRGDSIEIYPAYHTD-GIRIEFFGDEIDSISRINPVTAQTIFKLEKAY 241 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY H++T P + A++ I+ E+ + K +LLEA+R+ R YD+EML+ G Sbjct: 242 IYPAKHFITSGPKVKEAVENIRAEVDAQTDFFRKNNKLLEAERILSRTNYDMEMLQEMGY 301 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+LTGR PGE P L +Y + LL VDESHVTIPQI GM+ GD RK TL Sbjct: 302 CNGIENYSRHLTGRKPGERPACLIDYFQGEFLLIVDESHVTIPQIGGMFAGDRARKQTLV 361 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL F+E+ L P T+ VSATP +E+E+ +VEQIIRPTGL+DP Sbjct: 362 DFGFRLPSALDNRPLNFQEFETLTPRTLYVSATPAEYEIEKSSK-VVEQIIRPTGLLDPI 420 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V++R + Q+ED+ EI G R+L+T LTK+M+EDLT+Y E ++V Y+HSEV+T Sbjct: 421 VDVRPTKNQIEDLLVEIRKRIDAGERVLVTTLTKKMSEDLTDYYEEIGLKVAYLHSEVET 480 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+R+ IIRDLR G +DVL+GINLLREGLDIPE LVAILDADKEGFLR+ SLIQTIGRA Sbjct: 481 LDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA 540 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN ILYAD T S+ AI+ET RRR+ Q +HN K I P ++K+++ ++I+ Sbjct: 541 ARNVNGTAILYADKTTDSMAKAIEETKRRRKIQEDHNLKFGITPLTIKKEVGDIIEREEK 600 Query: 739 EDAATTNISIDAQQLSLSKK-KGKAHLK-SLRKQMHLAADNLNFEEAARIRDEI 790 E + + D ++ SKK K LK LR++M AA L+FE AA +RD++ Sbjct: 601 ERTSEDLVLEDVEKKFNSKKFPNKEVLKEKLREEMMKAAKELDFERAAILRDKM 654 >gi|124009064|ref|ZP_01693748.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134] gi|123985384|gb|EAY25299.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134] Length = 672 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/668 (50%), Positives = 471/668 (70%), Gaps = 14/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ +D+ P GDQP AI QL+ GI + EK Q LLGVTGSGKTFT A V+ + RP +V++ Sbjct: 2 YKLVSDFDPMGDQPKAIEQLIHGIKNGEKAQTLLGVTGSGKTFTAANVVAQLNRPTLVLS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P T TYIEK+ SIN +I+++R Sbjct: 62 HNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFLPTTGTYIEKDLSINSEIEKLRL 121 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT +LL R D +VV+SVSCIYGIG+ E + + ++ LK+GD + + + L +LV Y R Sbjct: 122 SATSALLSGRRDVLVVASVSCIYGIGNPEEFGKNVISLKVGDEISRNKFLFALVDILYSR 181 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G RG FRV GD+I+IF ++ +D A+R+ FG+++E I P T QK+ I I Sbjct: 182 TEAGFERGNFRVKGDTIDIFVAY-DDFAFRIFFFGDEVEAIHRIDPETNQKLSEETAISI 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT + L+ A+K I++++ +++ EKE R+ EA+R+++R +DLEM+ G C Sbjct: 241 FPANLFVTGQDVLHQAIKEIQDDMVKQVLYFEKENRVEEAKRIKERTEFDLEMMRELGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSRY RNPG P L +Y P+D LLF+DESHVT+PQI GMY GD RK L + Sbjct: 301 SGVENYSRYFDRRNPGSRPFCLLDYFPDDYLLFIDESHVTLPQIRGMYGGDRSRKTNLVD 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ + I +SATP +ELE+ +G+IVEQ+IRPTG++DP + Sbjct: 361 YGFRLPSALDNRPLNFQEFETMMNQVIYISATPAEYELEKSEGVIVEQLIRPTGVIDPEI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ +EI+ + R+L+T LTKRMAE+L++YL +I Y+HS+VK L Sbjct: 421 FVRPSLNQIDDLLEEIDATLKDDGRVLVTTLTKRMAEELSKYLDRLDINCTYIHSDVKPL 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+ DVL+G+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGRAA Sbjct: 481 ERVEILRQLRLGEIDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLIQTIGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIM---EVI 733 RN KVILYAD +T S++ A++ET RRR+ Q E+NKKHNI P++V KE IM V Sbjct: 541 RNEKGKVILYADKMTGSMERAMNETQRRRKVQDEYNKKHNITPKTVRKSKEAIMGQTNVA 600 Query: 734 DPILLEDAA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D A T N++ D +++ + +K+ +K M AA +L+F EAAR+R Sbjct: 601 DKRKKAGANYYTAPDTINMAADPVVSYMTQDDLQKLIKTTQKAMEKAAKDLDFMEAARLR 660 Query: 788 DEIKRLKS 795 DE+ LK+ Sbjct: 661 DELADLKT 668 >gi|305664821|ref|YP_003861108.1| excinuclease ABC subunit B [Maribacter sp. HTCC2170] gi|88707943|gb|EAR00182.1| excinuclease ABC subunit B [Maribacter sp. HTCC2170] Length = 663 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/664 (51%), Positives = 467/664 (70%), Gaps = 15/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI QL +GI+S+E Q LLGVTGSGKTF++A VIE +QRP +V+A Sbjct: 3 FKVVSEFKPTGDQPEAIRQLEEGINSQEPYQTLLGVTGSGKTFSVANVIEKVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + YIEK+ SINE I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL R D +VV+SVSC+YGIG+ + + ++ + + + +LL LV+ Y R Sbjct: 123 SATSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIFKNQVIARTKLLHMLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FRV GD +++FPS+ D A+R+ FG++IEEI F P I E + I Sbjct: 183 TTADFRNGNFRVKGDVVDVFPSY-ADHAFRIHFFGDEIEEIEAFDPFNNNVIEVYENLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ YI+++L ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDILQNAIHYIQDDLVHQIDYFKEIGKPLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVTIPQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL+ CQG+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLCQGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R L+T LTKRMAE+LT+YL N+R RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLVEEIQQRVEKDERTLVTTLTKRMAEELTKYLSRINVRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R++N K I+YAD IT S+Q IDET RREKQ+ +N +N+ P+++ + +D +L + Sbjct: 542 RHLNGKAIMYADKITASMQKTIDETNYRREKQIAYNTANNVTPKALNKS----LDSVLAK 597 Query: 740 DAATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 ++ +T + ++L L+K++ + ++ RK M AA L+F +AA++RDEIK Sbjct: 598 NSVST-YHFEKEELRAAEPDMDYLTKEQIEKMIRDKRKAMEKAAKELDFMQAAKLRDEIK 656 Query: 792 RLKS 795 L++ Sbjct: 657 MLQN 660 >gi|313206739|ref|YP_004045916.1| excinuclease ABC, b subunit [Riemerella anatipestifer DSM 15868] gi|312446055|gb|ADQ82410.1| excinuclease ABC, B subunit [Riemerella anatipestifer DSM 15868] gi|325335821|gb|ADZ12095.1| Helicase subunit of the DNA excision repair complex [Riemerella anatipestifer RA-GD] Length = 678 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/672 (50%), Positives = 472/672 (70%), Gaps = 23/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L+ GI + Q LLGVTGSGKTFT+A V+ +QRP IV+A Sbjct: 15 FKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLA 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+ T TYIEK+ SINE+++++R Sbjct: 75 HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRL 134 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL R D ++V+SVSCIYGIG+ +++ +++L++ + + +LL LV Y R Sbjct: 135 SATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIELELQSKISRTDLLHKLVNALYSR 194 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +RG+FRV GD I+IFP++ D A R+ FGN+I++I F P++G + + + I I Sbjct: 195 AVNEFVRGSFRVKGDVIDIFPAY-ADNAIRIRFFGNEIDKIQSFDPISGSIMGDFDKINI 253 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + T+N+A++ I+++L ++ + G+ LEA+RL++R DLEM++ G C Sbjct: 254 YPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYC 313 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY+ GRNPG P L +Y P D L+ +DESHVTIPQ+ MY GD RK L E Sbjct: 314 SGIENYSRYMDGRNPGSRPFCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 373 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ I VSATP +ELE+ QG VEQIIRPTGL+DP + Sbjct: 374 YGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELEKTQGEYVEQIIRPTGLLDPII 433 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++D+ +EI A++ R+L+T LTK+MAE+LT+Y + IR RY+HS+V TL Sbjct: 434 EVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDTL 493 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I++DLR G FDVLVG+NLLREGLD+PE LVAILDADKEG LRS+ S+IQT+GRAA Sbjct: 494 ERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 553 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732 RN+N K I+YAD +TKS+Q IDET RREKQ+ +N+ + + PQ + +KI +V Sbjct: 554 RNINGKAIMYADKMTKSMQATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPD 613 Query: 733 ------IDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I +++ A T +S +A+ L + + +KQM AA L+F AA+ Sbjct: 614 FPKQEYIQKEIVKQVAETKVSYGNAEDL-------EKIIAEKQKQMEAAAKQLDFILAAK 666 Query: 786 IRDEIKRLKSSP 797 +RDEIK LK +P Sbjct: 667 LRDEIKALKGTP 678 >gi|161507208|ref|YP_001577162.1| excinuclease ABC subunit B [Lactobacillus helveticus DPC 4571] gi|160348197|gb|ABX26871.1| Excinuclease ABC (subunit B) [Lactobacillus helveticus DPC 4571] Length = 682 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/659 (50%), Positives = 463/659 (70%), Gaps = 4/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI +L G K Q+L G TG+GKTFTMA +I + +P +V+ Sbjct: 10 FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L+ERND IVV+SVS IYG+G + Y++ ++ + G ++ LL LV QY R Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNMLLRDLVNLQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + A+R+ FG++I+ I E LTG+ I E+I ++ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H+VT L A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+ G Sbjct: 250 PATHFVTNDDQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GEPP TL ++ P+D L +DESH T+P+I MY GD +RK TL +Y Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +ELE+ VEQIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN R+ +T LTK+MAEDLT+YL + I+V+Y+HS++KTLE Sbjct: 429 VRPIEGQIDDLVGEINKRIDCNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++I+RDLRLGKFDVL+GINLLREG+D+PE LVAILDADKEGFLR+ L+QT+GRAAR Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737 N N +VI+YADTIT S++ AI+ T RRR+ Q E NK++ I P+++ + + +VI P Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEYGITPKTIIKPVQDVISITKPSS 608 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + ++ D L+ + K +K+L++QM AA L+FEEAA +RD I L+ S Sbjct: 609 GDRDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667 >gi|159904316|ref|YP_001551660.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9211] gi|238687131|sp|A9BD93|UVRB_PROM4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|159889492|gb|ABX09706.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT 9211] Length = 679 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/670 (51%), Positives = 464/670 (69%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 + + + Y P GDQP AI++L+ G++ ++ Q LLG TG+GKTFT+A VIE RP +V+A Sbjct: 4 YHLNSPYLPKGDQPKAISELVYGVNQGKQYQTLLGATGTGKTFTIANVIEQTGRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SS+NE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSVNEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G+ + +E L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKASVKFQLGNDINVRESLRELVSNQYVRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ I RG FR+ GD +EI P++ ED R+ +FG+++E I P+TG+ + N+ +I IY Sbjct: 184 DVDISRGNFRIKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPITGEILENLNSINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L A++ I++ELK +L +EG+LLEAQRLEQR YD+EML+ G C Sbjct: 243 PAKHFVTPKDRLLIAIQSIQKELKDQLDFFNQEGKLLEAQRLEQRTKYDIEMLKEVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L+GR+ G PP L +Y PED LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLSGRDQGTPPECLIDYFPEDWLLVVDESHVTCSQLQAMYNGDQSRKKVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ +E+ T+ +SATPG WE E IVEQ+IRPTG++DP VE Sbjct: 363 GFRLPSAADNRPLKSDEFWSKAKQTVFISATPGDWECEVSTDGIVEQVIRPTGVLDPVVE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ DEI + R+L+T LTKRMAEDL++YL E ++VRY+HSE+ ++E Sbjct: 423 VRPTAGQIDDLLDEIRKRVIKKERVLITTLTKRMAEDLSDYLSENRVKVRYLHSEIHSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII+DLR+G++DVLVG+NLLREGLD+PE LV ILDADKEGFLR+K SLIQTIGRAAR Sbjct: 483 RIEIIQDLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +LYAD +T+S+ AI ET RRR Q +N+KH I P+ +K I L Sbjct: 543 HVDGFALLYADNLTESMSTAIQETERRRAIQQAYNQKHGIIPKPAGKKPSNSILSFLELS 602 Query: 741 AATTNISIDAQQLSLSKKK----------GKAHLK------SLRKQMHLAADNLNFEEAA 784 N +A +S++ K G A ++ L +M+LAA+ L+FE+AA Sbjct: 603 RKLQNEGDNADLVSITSKAVDSLNQSEDLGIAFVELPEIIDKLEGKMNLAAEELDFEQAA 662 Query: 785 RIRDEIKRLK 794 ++RD I++L+ Sbjct: 663 KLRDRIRQLR 672 >gi|298253842|ref|ZP_06977429.1| helicase subunit of the DNA excision repair complex [Gardnerella vaginalis 5-1] gi|297531985|gb|EFH70960.1| helicase subunit of the DNA excision repair complex [Gardnerella vaginalis 5-1] Length = 704 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/686 (51%), Positives = 473/686 (68%), Gaps = 36/686 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKAPYKPSGDQPQAIDELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVSMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG+ IR ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A+K I++E R+ +L+K+ +LLEAQRLE R TYDLEML G C Sbjct: 251 PASHYIAGPERMECAVKAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL G +VEQIIRPTGL+DP +E Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + R+L+T LTK+MAEDLT+Y E I+V Y+HS+V TL Sbjct: 430 VRPVEGQVDDLLAEIKARVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YADT+T ++ AI ET RRREKQ+ +NK H I+P+ +++KI +V D + ED Sbjct: 550 NVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768 T + A + K G +H +K+L Sbjct: 610 VDTQTLL--AGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIMSLIKNLS 667 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH+AA+ L FE AAR+RDEI+ LK Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693 >gi|303233429|ref|ZP_07320098.1| excinuclease ABC, B subunit [Atopobium vaginae PB189-T1-4] gi|302480558|gb|EFL43649.1| excinuclease ABC, B subunit [Atopobium vaginae PB189-T1-4] Length = 772 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/592 (55%), Positives = 431/592 (72%), Gaps = 2/592 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y P GDQ +AI +L G+ + ++ Q LLGVTGSGKTFTMA VI+ Q+P +++ Sbjct: 23 FDIESRYTPRGDQVSAIEKLSYGVTNNKRYQTLLGVTGSGKTFTMANVIQQTQKPTLIIE 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQ+ SE K FPHNAV YFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++++RH Sbjct: 83 PNKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVEKLRH 142 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T SLL R DCIVV+SVSCIYGIGS + Y+ + + +E+ + + SL+ QY+R Sbjct: 143 QTTSSLLSRRDCIVVASVSCIYGIGSPQDYAGLAPNVDKTQPLERDDFIRSLIDIQYERN 202 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++RGTFRV GD++++FP + E R+ FG+++E I+E L G R + I I+ Sbjct: 203 DVDLVRGTFRVRGDAVDVFPPYAER-PIRIVFFGDEVETIAEIDALNGTIEREFDAIPIW 261 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT RP + +A+ I++EL+ R+ EL+ L+EAQRL QR +YD+EMLET G C Sbjct: 262 PASHYVTARPKITSAIGTIQDELEARVAELKAHNLLVEAQRLSQRTSYDIEMLETMGFCS 321 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PGEPP TL +Y P D L +DESHV + Q+ MY GD RK TL E+ Sbjct: 322 GIENYSRHLDGRKPGEPPYTLIDYFPSDMLCIIDESHVALHQLRAMYEGDRSRKVTLVEH 381 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPLRF+E+ P I VSATPG +EL + +VEQ+IRPTGL+DP V Sbjct: 382 GFRLPCALDNRPLRFDEFEARIPQFIYVSATPGDYELSVSKQ-VVEQVIRPTGLLDPDVC 440 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +R Q++D+ DEIN +G R+L+ LTK MA DLTE+ +R RV YM S+ TL+ Sbjct: 441 VRPSRGQIDDLADEINTRIAKGERVLVCTLTKHMAADLTEHFLDRGFRVSYMTSDTATLD 500 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+IIRDLR G DVLVGINLLREGLDIPE LVAILDADKEGFLRS+ LIQT+GRAAR Sbjct: 501 RIDIIRDLRQGNIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSRRDLIQTMGRAAR 560 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 N + VI+YAD IT+S++ AI ET RRR QL +N++H+I PQ++K+ + +V Sbjct: 561 NAHGTVIMYADRITQSMREAITETRRRRALQLAYNEEHHIVPQTIKKSLTDV 612 >gi|315186299|gb|EFU20060.1| Excinuclease ABC subunit B [Spirochaeta thermophila DSM 6578] Length = 661 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/657 (52%), Positives = 467/657 (71%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQ AIA L +G+ + Q L GVTGSGKTFTMAK++E +Q P +V++ Sbjct: 4 FRVEAPFGPAGDQGKAIALLSEGVKKGYRYQTLKGVTGSGKTFTMAKIVEEVQLPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV D YIEK++SINE+IDR+R Sbjct: 64 HNKTLAAQLYREFKEFFPHNAVEYFVSYYDYYQPEAYVASKDLYIEKDASINEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVV++VSCIYG+G+ E + +M V++ +G ++ L LV QY+R Sbjct: 124 SATASLMERPDVIVVATVSCIYGLGNPEHFREMRVRIDVGQRLDLGMLKQQLVSLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV G+ ++I+P++LE V +RV + +++ I +PLT + + +++ +Y Sbjct: 184 DAVLTRGTFRVRGEIVDIYPAYLEHV-YRVELDWDEVVSIKVVHPLTLEVLDERKSLFVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + +A++ I+EEL R EL + +L+EAQRL+ R YDLEMLE G C Sbjct: 243 PAKHFVLPEEQVRSAIQGIREELDERYRELLSQNKLVEAQRLKARTEYDLEMLEEMGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG+ P L +Y P+ L+F+DESHVT+PQ+ MY GD RK +L EY Sbjct: 303 GIENYSRHLSGRKPGQRPAVLLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR+EE+ + P I VSATP EL + +VEQ+IRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLRYEEFESIVPQVIYVSATPEEEELSKSSQ-VVEQVIRPTGLLDPEVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+Y EI ++G R+L+T LTK+MAEDLT+YL +RVRY+H+EV+T+E Sbjct: 422 VRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAEDLTDYLQSLGLRVRYLHAEVETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++RDLR G+FDVLVGINLLREGLD+PE LVAILDADK GFLRS TSLIQ +GRAAR Sbjct: 482 RVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSATSLIQIMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 N KVI+YAD +T +++ AI+ET RRR Q +N++H I PQ++++ + ++++ + Sbjct: 542 NAEGKVIMYADRVTDAMREAIEETRRRRTIQEAYNREHGITPQTIQKSVRDILERRMKVK 601 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+ I + + L + K ++ L K+M A NL FE AA IRDEI RLK Sbjct: 602 EEVERKEIEVLVHGYNILVPSERKKLIQRLEKEMLERAKNLEFEMAAVIRDEIARLK 658 >gi|218961133|ref|YP_001740908.1| excinulease of nucleotide excision repair, DNA damage recognition component [Candidatus Cloacamonas acidaminovorans] gi|167729790|emb|CAO80702.1| excinulease of nucleotide excision repair, DNA damage recognition component [Candidatus Cloacamonas acidaminovorans] Length = 667 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/668 (51%), Positives = 450/668 (67%), Gaps = 17/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AI L+KGI ++ Q+LLGVTGSGKTFT+A VI RP +V++ Sbjct: 4 FKLISDYTPSGDQPEAIEALIKGIEEGKRHQVLLGVTGSGKTFTIANVIAHFNRPTLVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FP NAVEYF+SYYDYYQPEAY+P D YIEK+SSINEQI+++R Sbjct: 64 HNKTLAAQLYGELKQLFPENAVEYFISYYDYYQPEAYIPGKDIYIEKDSSINEQIEKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SL+ER D I+VSSVSCIYG+G E Y + ++ LK G ++++EL+ L+ Y R Sbjct: 124 RATMSLMERRDVIIVSSVSCIYGLGVPEEYREALISLKKGMKMDREELIHQLISAHYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD ++IFP++LE RV FG++I + + +P++ Q + VE +Y Sbjct: 184 DIAFERGAFRVRGDVVDIFPAYLEH-CLRVEFFGDEIYRLEKIHPISCQPLGEVEKYDVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++ L A+ I++E+ R+ + + +EA+RL+QR T+DLEML G C Sbjct: 243 PAIHFLMNEEKLRKALISIEQEMNERVAWFLQNQKYVEAERLKQRTTFDLEMLHELGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R+LTG PGEPP L +Y PED L+ +DESHVTIPQ+ GM+ GD+ RK L EY Sbjct: 303 GIENYTRHLTGVKPGEPPNCLLDYFPEDFLMVIDESHVTIPQVHGMFAGDYTRKKNLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ I VSATP +EL +G IVEQ+IRPTGLVDP +E Sbjct: 363 GFRLPSAFDNRPLRFEEFEKFMHQVIFVSATPADYELSLTKGEIVEQVIRPTGLVDPEIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I + QV+D+ +I + +IL+ LTKRM+EDL+ YL I+ RYMHS++ ++E Sbjct: 423 INPIKHQVDDLIAQIKERVAKKQKILVMTLTKRMSEDLSIYLNNAGIKARYMHSDIDSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +IIRD RLG+FDV+VGINLLREGLD+PE LVAILDADK GFLRS SLIQ GRAAR Sbjct: 483 RAKIIRDFRLGEFDVIVGINLLREGLDLPEVSLVAILDADKTGFLRSTRSLIQISGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ KVI YAD IT +I+ + ET RRR KQL +N++H I PQ+ I + ID I+ Sbjct: 543 NVDGKVIFYADEITDAIKQTVAETNRRRAKQLAYNEEHGITPQT----IYKTIDQIMQST 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLR------------KQMHLAADNLNFEEAARIRD 788 A A+Q + K K ++ L K+M+ AA NL+FE AA +RD Sbjct: 599 AIAEGYDKIAKQATFEKPSAKEFMEYLELDNKEKIIELLTKEMNKAAANLDFEHAAELRD 658 Query: 789 EIKRLKSS 796 ++ L+ + Sbjct: 659 KLWELQQN 666 >gi|295397819|ref|ZP_06807884.1| excision endonuclease subunit UvrB [Aerococcus viridans ATCC 11563] gi|294973954|gb|EFG49716.1| excision endonuclease subunit UvrB [Aerococcus viridans ATCC 11563] Length = 664 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/659 (53%), Positives = 466/659 (70%), Gaps = 2/659 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I F + ++Y PSGDQP AI ++++ + + +K Q+LLG TG+GKTFTMA VI RP + Sbjct: 3 INQFDLVSEYEPSGDQPEAIRRIVEQVEAGDKAQVLLGGTGTGKTFTMANVIAQTNRPTL 62 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +D+YIEK +S+N++ID+ Sbjct: 63 VLAHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSYIEKSASVNDEIDK 122 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSAT S+LER D IVV+SVSCIYG+ + Y ++ ++ G + + + LV+ QY Sbjct: 123 LRHSATSSILERRDTIVVASVSCIYGLVNPAEYRDHVISIRQGQELSRDAFMRRLVENQY 182 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R DI RGTFRV GD +++F S + + RV FG++I+ I E LTG+ VE Sbjct: 183 ERNDIDFQRGTFRVRGDIVDVFLSSHDSSSIRVEFFGDEIDRIREVDALTGEVQSEVEHF 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY +H+V + ++K I+ EL+ RL EL EG+LLEAQRLEQR YD+EML G Sbjct: 243 PIYPATHFVVDHEQVEKSVKSIEAELEERLKELNDEGKLLEAQRLEQRTRYDIEMLLEMG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR++ GR PGE P TL ++ PED LL VDESH+T+PQ+ GMY GD RK L Sbjct: 303 YCNGIENYSRHMDGRQPGEAPYTLLDFFPEDFLLMVDESHMTMPQVRGMYNGDKARKQVL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVD 556 ++GFRLPS +DNRPL+ EE+ T+ VSATP +E+E+ + IVEQIIRPTGL+D Sbjct: 363 IDHGFRLPSALDNRPLKLEEFEEKLNQTLYVSATPADYEVEKAGEDDIVEQIIRPTGLLD 422 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P VE+R Q++D+ EIN ++ R+ +T LTKRMAEDLT+YL E I+V+Y+HS++ Sbjct: 423 PTVEVRPIEGQIDDIISEINDRIEREERVFITTLTKRMAEDLTDYLEEVGIKVKYLHSDI 482 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 KTLER EIIRDLRLG FDVL+GINLLREG+D+PE LV ILDADKEGFLR++ SLIQTIG Sbjct: 483 KTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVTILDADKEGFLRNERSLIQTIG 542 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN N VI+YAD IT S++ A+DET RRR Q +NK+H I PQ++K++I + I Sbjct: 543 RAARNQNGHVIMYADGITDSMRRAMDETARRRAIQQAYNKEHGIVPQTIKKEIRDAIRIT 602 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +N S+ Q +L + + L+++ +M AA +LNFE+AA +RD I LK+ Sbjct: 603 HVNSEEMSN-SLTEQLRALKRDDREQALRNVELEMKQAAKDLNFEKAAELRDIIMELKA 660 >gi|283783088|ref|YP_003373842.1| excinuclease ABC, B subunit [Gardnerella vaginalis 409-05] gi|283441612|gb|ADB14078.1| excinuclease ABC, B subunit [Gardnerella vaginalis 409-05] Length = 704 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/686 (50%), Positives = 474/686 (69%), Gaps = 36/686 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKAPYKPSGDQPQAIDELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVSMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG+ IR ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A++ I++E R+ +L+K+ +LLEAQRLE R TYDLEML G C Sbjct: 251 PASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR+ G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL G +VEQIIRPTGL+DP +E Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + R+L+T LTK+MAEDLT+Y E I+V Y+HS+V TL Sbjct: 430 VRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YADT+T ++ AI ET RRREKQ+ +NK H I+P+ +++KI +V D + ED Sbjct: 550 NVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768 T + A + K G +H +K+L Sbjct: 610 VDTQTLL--AGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANVSELPQDDIMSLIKNLS 667 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH+AA+ L FE AAR+RDEI+ LK Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693 >gi|297243676|ref|ZP_06927607.1| helicase subunit of the DNA excision repair complex [Gardnerella vaginalis AMD] gi|296888427|gb|EFH27168.1| helicase subunit of the DNA excision repair complex [Gardnerella vaginalis AMD] Length = 704 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/686 (50%), Positives = 474/686 (69%), Gaps = 36/686 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKAPYAPSGDQPQAIEELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVSMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG+ IR ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A++ I++E R+ +L+K+ +LLEAQRLE R TYDLEML G C Sbjct: 251 PASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR+ G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL G +VEQIIRPTGL+DP +E Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + R+L+T LTK+MAEDLT+Y E I+V Y+HS+V TL Sbjct: 430 VRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YADT+T ++ AI ET RRREKQ+ +NK H I+P+ +++KI +V D + ED Sbjct: 550 NVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768 T + A + K G +H +K+L Sbjct: 610 VDTQTLL--AGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIMSLIKNLS 667 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH+AA+ L FE AAR+RDEI+ LK Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693 >gi|284929353|ref|YP_003421875.1| Excinuclease ABC subunit B [cyanobacterium UCYN-A] gi|284809797|gb|ADB95494.1| Excinuclease ABC subunit B [cyanobacterium UCYN-A] Length = 664 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/663 (50%), Positives = 466/663 (70%), Gaps = 14/663 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 FQ++ + P+GDQP AI +L+ + K Q LLG TG+GKTF++A VI+ +++P +++ Sbjct: 1 MFQLKAPFKPTGDQPRAIEELILSLKEGNKFQTLLGATGTGKTFSIASVIDKIKKPTLIL 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL +E +NFFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +R Sbjct: 61 AHNKTLAAQLCNELRNFFPNNAVEYFISYYDYYQPEAYIPLSDTYIEKSASINDEIDMLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSATRSL ER D I+++S+SCIYG+G Y + + L++G + Q++LL LV QY R Sbjct: 121 HSATRSLFERQDVIIIASISCIYGLGMPSEYLKASIPLEVGREINQRQLLRDLVNVQYSR 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD +EI P++ ED R+ FG++++ I +P++G + +++ I I Sbjct: 181 NDMELKRGRFRVKGDILEIVPAY-EDRVIRIEFFGDEVDSIRYLHPVSGDILEDLKKINI 239 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y H+VT + L+ + K I EEL+ +++ E+ G+LLE+QR+ QR YDLE+L G C Sbjct: 240 YPARHFVTRKDRLDASCKAIAEELEQQIVNFEQAGKLLESQRISQRTRYDLELLREVGYC 299 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSR+L GR GE P L +Y+P+D LL VDESHVTIPQI GMY GD RK L + Sbjct: 300 NGVENYSRHLAGRESGESPECLIDYLPKDWLLVVDESHVTIPQIRGMYNGDQARKKVLID 359 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS DNRPL+ +E+ I VSATPG WELE+ + +++Q+IRPTG++DP + Sbjct: 360 HGFRLPSAADNRPLKSDEFWSKVNQCIFVSATPGEWELEKSEDKVIQQVIRPTGILDPKI 419 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + QV+D+ EI Q+ RIL+T LTKRMAEDLTEY ER ++VRY+HSE+K++ Sbjct: 420 SVRPTKNQVDDLLGEIKDRVQRQERILVTTLTKRMAEDLTEYFQEREVKVRYLHSEIKSI 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI++DLR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR + SLIQ IGRAA Sbjct: 480 ERIEILQDLRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRGEKSLIQIIGRAA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R++N + ILY D +T S+ AI+ET RRR Q +N K+NI P+S+ I E + IL Sbjct: 540 RHINGQAILYGDKLTDSMIKAIEETERRRHIQSSYNDKNNIIPKSI---ISERNNSIL-- 594 Query: 740 DAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + + S+D ++L +S K +K L +M +A+ L+FE AA+ RD+IK Sbjct: 595 NYLDISRSLDTEKLEEICDHIEEISLDKIPELIKQLESKMEKSANQLDFELAAKYRDQIK 654 Query: 792 RLK 794 + Sbjct: 655 HFR 657 >gi|195953210|ref|YP_002121500.1| excinuclease ABC subunit B [Hydrogenobaculum sp. Y04AAS1] gi|195932822|gb|ACG57522.1| excinuclease ABC, B subunit [Hydrogenobaculum sp. Y04AAS1] Length = 661 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/658 (51%), Positives = 455/658 (69%), Gaps = 4/658 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++FFQ++ P+GDQP AI +LL + K Q+LLG TG+GKTFT+A +I ++P + Sbjct: 1 MSFFQLKKHLKPAGDQPKAIDKLLSNFEAGAKAQVLLGATGTGKTFTIANIIAKYKKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQLY EFK FP+NAVEYF+SYYDYYQPEAY+P D YIEK+SSIN+ +D+ Sbjct: 61 VLAHNKTLAAQLYREFKELFPNNAVEYFISYYDYYQPEAYIPEKDLYIEKDSSINDILDK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 RHSAT+S++ER D IVV+SVSCIYG+GS E Y M +QL G ++ +L LV+ Y Sbjct: 121 YRHSATKSVIERADTIVVASVSCIYGLGSPEHYVNMRIQLLKGQKLDPLKLSRQLVEIGY 180 Query: 318 KRQDIGIIRGTFRV-CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 +R D RGTF V GDSIEI PSH +D+ R+ + N+I+ I E L IR ++ Sbjct: 181 ERNDFSFKRGTFSVRGGDSIEIVPSHADDIVIRIEFWDNEIDSIKELDLLNRHVIREIDY 240 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 ++ +HYV P+P L A++ I+++LK R+ + +G+ +EAQRL QR YD+EM++ Sbjct: 241 TVLFPATHYVAPKPALMEAIEKIEKDLKARVEYFKSQGKEIEAQRLWQRTMYDIEMIKEI 300 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C+ IENYSRY GR GEPP TL +Y+PED LL VDESHVTIPQ+ GMY GD RK Sbjct: 301 GHCKGIENYSRYFDGRKEGEPPFTLLDYMPEDFLLIVDESHVTIPQVRGMYNGDISRKQK 360 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L +YG+RLP+ +DNRPL+F+E+ I VSATPG WE+E +G+IVEQI+RPTGL+D Sbjct: 361 LVDYGWRLPAALDNRPLKFDEFLRKINKVIFVSATPGDWEIEFSKGVIVEQIVRPTGLLD 420 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +E+R Q+ED+ EI + R ++ TKR++ED+ YL ER I+ RY+HS++ Sbjct: 421 PEIEVRPTTNQLEDLIKEILKVKARNERAIVLTTTKRLSEDVANYLIERRIKARYLHSDL 480 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 +ER + I++LR G DV+VG+NLLREG+D+PE LVAIL+ADKEGFLRS TSLIQTIG Sbjct: 481 DAIERAKAIKELREGSIDVIVGVNLLREGIDMPEVSLVAILEADKEGFLRSTTSLIQTIG 540 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 R ARN+N K +LYAD IT+S++ AIDET RRRE Q +N++H I P+S+ + + E++ Sbjct: 541 RVARNINGKAMLYADRITESMKKAIDETNRRREIQKRYNEEHGIIPKSIVKPVKELLS-- 598 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ED + + ++K L L K M A+ FE+AA+IRDEI LK Sbjct: 599 -IEDLDYVKVPDSIPKDIKTEKDLVERLNKLEKMMWEASKKWEFEKAAKIRDEINELK 655 >gi|163786024|ref|ZP_02180472.1| excinuclease ABC subunit B [Flavobacteriales bacterium ALC-1] gi|159877884|gb|EDP71940.1| excinuclease ABC subunit B [Flavobacteriales bacterium ALC-1] Length = 668 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/663 (51%), Positives = 464/663 (69%), Gaps = 13/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P+GDQP AI QL GI S+EK Q LLGVTGSGKTFT+A VIE +QRP +V+A Sbjct: 3 FKIESEFKPTGDQPEAIKQLAGGIKSKEKYQTLLGVTGSGKTFTVANVIEEVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + YIEK+ SINE+I++MR Sbjct: 63 HNKTLAAQLYSEFKQFFPDNAVEYFVSYYDYYQPEAYIPVSGVYIEKDLSINEEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + ++ ++ + + +LL LV+ Y R Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFQKNVISIERDQVISRTKLLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FR+ GD++++FP + D A+R+ FG++IEEI F T + I + + I Sbjct: 183 TEAEFKNGNFRIKGDTVDVFPGY-SDNAFRIHFFGDEIEEIEAFDARTNEIIERYDRLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT LN A+K I+++L + ++ G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLNGAIKDIQDDLVKQHDYFKEIGKHLEAKRLKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTI Q+ MY GD RK L + Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKVNLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +E+++ G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQKTDGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++++ +EI ++ R L+T LTKRMAE+L +YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDNLIEEIQDRVEKDERTLVTTLTKRMAEELVKYLTRISIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K I+YAD ITKS+Q IDET RREKQ+ +N KHNI P+++ + +D L + Sbjct: 542 RNLNGKAIMYADKITKSMQKTIDETEYRREKQIAYNTKHNIKPKALNKS----LDSALAK 597 Query: 740 DAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +T I+ + + L+K + + ++ RKQM LAA L+F EAA RDEI Sbjct: 598 NSVSTYRTELDAKIAAEPESEYLTKSQLEKKIREKRKQMELAAKALDFMEAAHFRDEIMA 657 Query: 793 LKS 795 +S Sbjct: 658 YQS 660 >gi|308235368|ref|ZP_07666105.1| excinuclease ABC subunit B [Gardnerella vaginalis ATCC 14018] gi|311114861|ref|YP_003986082.1| excision endonuclease subunit UvrB [Gardnerella vaginalis ATCC 14019] gi|310946355|gb|ADP39059.1| excision endonuclease subunit UvrB [Gardnerella vaginalis ATCC 14019] Length = 704 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/686 (50%), Positives = 475/686 (69%), Gaps = 36/686 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ Y+PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKAPYNPSGDQPQAIEELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVNMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG+ IR ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + A++ I++E R+ +L+K+ +LLEAQRLE R TYDLEML G C Sbjct: 251 PASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL+++E+ T+ +SATPG +EL G +VEQIIRPTGL+DP +E Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + R+L+T LTK+MAEDLT+Y E I+V Y+HS+V TL Sbjct: 430 VRPVEGQVDDLLAEIKARVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YAD++T ++ AI ET RRREKQ+ +NK H I+P+ +++KI +V D + ED Sbjct: 550 NVSGTVLMYADSVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768 T + + + + K G +H +K+L Sbjct: 610 VDTQTLLVGGYR--NANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIMSLIKNLS 667 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 +QMH+AA+ L FE AAR+RDEI+ LK Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693 >gi|224541969|ref|ZP_03682508.1| hypothetical protein CATMIT_01142 [Catenibacterium mitsuokai DSM 15897] gi|224525109|gb|EEF94214.1| hypothetical protein CATMIT_01142 [Catenibacterium mitsuokai DSM 15897] Length = 656 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/656 (53%), Positives = 458/656 (69%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + + P GDQP AI +L+KGIH +K Q+LLG TG+GKTFT A VI + +P +V++ Sbjct: 3 YKLVSKFKPMGDQPEAIKELVKGIHEGKKTQVLLGGTGTGKTFTFANVIAQVNKPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P++DTYI+KES NE+I+ +R Sbjct: 63 HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPKSDTYIDKESQTNEEIEMLRA 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A SLLER D IVV+SV+ IYG+G+ +SY +MI L++G ++++ELL+ LV +QY R Sbjct: 123 AAMNSLLERKDTIVVASVAAIYGLGNPQSYQEMIFSLRVGQEIDRRELLTFLVDRQYTRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++GTFRV GD IEI P H E R+ +FG++++ I+E PLTG + T IY Sbjct: 183 DMDQVKGTFRVRGDVIEIVPGHTESYIIRIELFGDEVDRITEVDPLTGHVQASYNTYTIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+T R + A I+EELK RL + + LE +R++ R +D+EML G C Sbjct: 243 PAEEYITSREKMLHACDTIEEELKDRLQYYQDVAKPLEYERIDNRTRHDIEMLREVGICP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PGE P L +Y P+D LL VDESHV +PQI GM+ GD RK TL EY Sbjct: 303 GIENYSRHIDGRKPGERPYCLIDYFPDDFLLIVDESHVMLPQIRGMFNGDRSRKETLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P I VSATPG +ELE G VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLRFEEFEKLIPQAIFVSATPGDYELEGVHGEYVEQIIRPTGLLDPIIE 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L ++ R+L+T LTKRMAEDLT+YL E ++V Y+HSE KTLE Sbjct: 423 VRPIEDQIDDIISEIQLRIERNERVLITTLTKRMAEDLTDYLKEFGLKVAYLHSETKTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLRLGK+DVL+GINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 483 RTEILRDLRLGKYDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YAD IT S+Q AIDET+RRRE Q +NK H I P ++K++I E I + D Sbjct: 543 NADGHVIMYADRITDSMQHAIDETSRRREIQEAYNKAHGITPTTIKKEIREAIHGQEVID 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A + + KK K L+ L +QM AA L+FE A +RD I+ +K Sbjct: 603 EAQKLVK---KGRKAPKKDKKVLLEELERQMKEAAKVLDFERAMELRDMIEEIKDG 655 >gi|15606895|ref|NP_214276.1| excinuclease ABC subunit B [Aquifex aeolicus VF5] gi|8134784|sp|O67708|UVRB_AQUAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|2984128|gb|AAC07664.1| repair excision nuclease subunit B [Aquifex aeolicus VF5] Length = 663 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/650 (52%), Positives = 451/650 (69%), Gaps = 4/650 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++T+ P+GDQP AI +LL+ + K Q LLGVTGSGKTFT+A VI +P +V+ Sbjct: 8 FKLKTNLKPAGDQPKAIKKLLENLRKGVKEQTLLGVTGSGKTFTLANVIAKYNKPTLVVV 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQLY EFK FP NAVEYFVSYYDYYQPEAY+P D YIEK++SINE ++R RH Sbjct: 68 HNKILAAQLYREFKELFPENAVEYFVSYYDYYQPEAYIPEKDLYIEKDASINETLERFRH 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D IVV+SVSCIYG+G E Y + ++L+ G + +LL LV+ Y+R Sbjct: 128 SATISVLERRDVIVVASVSCIYGLGKPEHYENLRIKLQRGIRLNLSKLLRKLVELGYQRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I R TF V GD +EI PSH ED RV + +++E I L I+ VE ++ Sbjct: 188 DFAIKRATFSVRGDVVEIVPSHTEDYLVRVEFWDDEVERIVLMDALNRHVIKEVEEYSVF 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ PRPT+ A+K I+++L R+ + +GR +EAQRL QR YD+EM+ G C+ Sbjct: 248 PASHYIAPRPTVEQALKEIEKDLIERVKWFKSQGREVEAQRLYQRTMYDIEMIRELGHCK 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y PED LL +DESH+TIPQ+ MY GD RK L EY Sbjct: 308 GIENYSRYFDGRKPGEPPFTLLDYFPEDFLLIIDESHMTIPQLRAMYNGDRSRKEKLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+RLPS +DNRPL+FEE+ I VSATPG WELE+ + +VEQI+RPTGL+DP VE Sbjct: 368 GWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWELERSEA-VVEQIVRPTGLLDPVVE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q+E++ EI ++ R L+ TKR+AE++ +YL ER IR +YMHSE+ +E Sbjct: 427 VRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERKIRAKYMHSELDAIE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R ++IR+LR G DV+VG+NLLREGLD+PE LVAI+DADKEGFLRS +LIQTIGRAAR Sbjct: 487 RAQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSYQALIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++ K ILYAD ITK+++ AI ET RRR+ Q E NKKH I P+S+K+ + E+ + +E+ Sbjct: 547 NIHGKAILYADRITKAMEKAIQETQRRRKIQEEFNKKHGITPKSIKKPVKEL---LAIEE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 ++ + + S++ ++ L K+M A N FE+AA++RDEI Sbjct: 604 LDYVSVPEELPKGVKSEEDILKKIEKLEKEMWKYAQNWEFEKAAKVRDEI 653 >gi|78183661|ref|YP_376095.1| excinuclease ABC subunit B [Synechococcus sp. CC9902] gi|78167955|gb|ABB25052.1| Excinuclease ABC subunit B [Synechococcus sp. CC9902] Length = 679 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/671 (51%), Positives = 453/671 (67%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P GDQP AI QL+ G++ E+ Q LLG TG+GKTFTMA VI RPA+V+A Sbjct: 4 FDLTAPYSPKGDQPTAITQLVDGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH Sbjct: 64 HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + V+ ++G ++ + L LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGATLNIRGQLRELVNNQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I RG FR+ GD +EI P++ +D R+ +FG+++E I P TG+ ++++E I IY Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEDINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP+ L+ A+K I+ EL+ RL L EG+LLEAQRLEQR YDLEML+ G C Sbjct: 243 PAKHFVTPKDRLDDAIKAIRMELRDRLEFLNGEGKLLEAQRLEQRTKYDLEMLDQVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+R+L GR G PP L +Y P+D LL VDESHVT Q+ MY GD RK L ++ Sbjct: 303 GVENYARHLAGREAGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLVDH 362 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLPS DNRPL+ E W R T+ VSATPG+WELE G + +Q+IRPTG++DP + Sbjct: 363 GFRLPSAADNRPLKGSEFWEKAR-QTVFVSATPGNWELEVSTGQVAQQVIRPTGVLDPLI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R QV+D+ EI A + R+L+T LTKRMAEDLT+YL E RVRY+HSE+ ++ Sbjct: 422 EVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENGTRVRYLHSEIHSI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEII+DLRLG++DVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAA Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R+V K +LYA+ +T S+ AID T +RR+ Q +N++H I P + +K I L Sbjct: 542 RHVEGKALLYAENMTDSMLKAIDVTEKRRKIQHTYNEEHGIVPTAAGKKASNSILSFLEL 601 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEA 783 DA + ++ K +A K L +M AA L+FEEA Sbjct: 602 SRKLKQDGPDADLVEVAGKAVRALEKDADAGLALEALPELIDQLESKMKDAAKKLDFEEA 661 Query: 784 ARIRDEIKRLK 794 A +RD +K+L+ Sbjct: 662 ANLRDRVKQLR 672 >gi|171915971|ref|ZP_02931441.1| excinuclease ABC subunit B [Verrucomicrobium spinosum DSM 4136] Length = 745 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/720 (48%), Positives = 467/720 (64%), Gaps = 65/720 (9%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQ AIA+L+K + + + Q LLGVTGSGKTFTMA +I + +PA++M+ Sbjct: 10 FQLNSHYSPEGDQGQAIAKLVKSVRAGNRHQTLLGVTGSGKTFTMANIIAQIGKPALIMS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFKNFFPHNAVEYFVSY+DYYQPEAY+ R+DTYIEK+SSINE+I+RMR Sbjct: 70 HNKTLAAQLYSEFKNFFPHNAVEYFVSYFDYYQPEAYIARSDTYIEKDSSINEEIERMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S +LL R D IVV+SVSCIYG+GS E Y M++ LK+GD + ++ L+ LV Y+R Sbjct: 130 STMGALLTRKDVIVVASVSCIYGLGSPEDYEGMMLPLKVGDVITRESFLTRLVDMLYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FR GD IE+FP++LED A RV FG++I+ +S F PLTG + Y Sbjct: 190 DIAFGRGKFRARGDVIEVFPAYLEDEAIRVEFFGDEIDRMSVFNPLTGTATGQLPGYTFY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VTP L A+K I+EEL R+ E E++G+LLEAQRL R YD+EM++ G CQ Sbjct: 250 PAKQFVTPADKLRRAIKAIREELDARIAEFEQQGKLLEAQRLRMRTEYDIEMMQEMGFCQ 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L R PG P TL + +D +LF+DESHVT+PQI GMY GD RK L E+ Sbjct: 310 GIENYSRHLASREPGSTPGTLLSFFRDDFMLFLDESHVTVPQIGGMYEGDRSRKTVLVEH 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE---------------------- 538 GFRLPS MDNRPL+F E+ + VSATP ++E+E Sbjct: 370 GFRLPSAMDNRPLKFPEFMKKMHQIVYVSATPATFEVENSIVGNTGYIPHKRERIGEEEG 429 Query: 539 ------------------------------QCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 + + +IVEQIIRPTGL+DP V +R + Q+ Sbjct: 430 VPAMVPGSRSKPIVRISGSAEPLEKFDVTTKGRHLIVEQIIRPTGLLDPIVTMRPLKGQI 489 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 ++ + ++ R+L+T LTKR AEDLT+YL +++VRY+HSE+ +ER+EI+R L Sbjct: 490 DETIELCRQRIEKNERVLVTTLTKRTAEDLTDYLRNLDLKVRYLHSEIDAIERVEILRAL 549 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 R G+FD+LVGINLLREGLD+PE LV ILDADKEGFLRS+TSL+QT GRAAR+VN +V+L Sbjct: 550 RAGEFDILVGINLLREGLDLPEVSLVCILDADKEGFLRSETSLLQTAGRAARHVNGEVVL 609 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 +AD IT+SIQ I+ + RRE+Q +HN+KH I PQ+V+ + E + A N+ Sbjct: 610 FADQITQSIQALINISAYRRERQEDHNEKHGITPQTVQRAVQESLHTY----QAGRNVE- 664 Query: 749 DAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 + + + G A ++ L +M AA L +E AA +RD+I+ LK G++D+ Sbjct: 665 --ESMVRDEAGGYAVTEVIRELESEMAEAAVKLEYERAALLRDQIRELKKQA---GIEDT 719 >gi|283455816|ref|YP_003360380.1| excinuclease ABC subunit B [Bifidobacterium dentium Bd1] gi|283102450|gb|ADB09556.1| Excinuclease ABC subunit B [Bifidobacterium dentium Bd1] Length = 706 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 15 FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 75 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK G +++ ELL V QYKR Sbjct: 135 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 195 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ IKEEL R+ EL K+G+ LEAQRL R TYDLEML G C Sbjct: 254 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 314 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 374 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 433 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 493 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 553 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 612 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A +++ + S S K+ + LK+ L QM Sbjct: 613 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 672 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 673 HTAAEQLQFELAARLRDEIRDLK 695 >gi|237785414|ref|YP_002906119.1| excinuclease ABC subunit B [Corynebacterium kroppenstedtii DSM 44385] gi|237758326|gb|ACR17576.1| excinuclease ABC, subunit B [Corynebacterium kroppenstedtii DSM 44385] Length = 736 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/691 (49%), Positives = 476/691 (68%), Gaps = 38/691 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI ++ + + E+ +L+G TG+GK+ T A +IE QRP +VMA Sbjct: 35 FEVVSDYEPAGDQPQAIKEIDERLRRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH Sbjct: 95 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VVSSVSCIYG+G+ +SY + L++G+ V++ + L LV QY R Sbjct: 155 SATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSIPLRVGEEVDRDQFLRLLVDVQYTRN 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++I P++ E+V RV FG++I+ + +PLTG+ I + ++I+ Sbjct: 215 DVAFTRGTFRVKGDVVDIIPAY-EEVGVRVEFFGDEIDSLHTIHPLTGEVIDTHDQLRIF 273 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A + IK ELK RL +LE G+L+EAQRL R +DLEM+E G C Sbjct: 274 PATHYVAGPERMAKAEEAIKAELKDRLADLENRGKLVEAQRLRMRTEFDLEMIEQVGFCS 333 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G P TL +Y PED L +DESHVT+PQI GM+ GD RK L ++ Sbjct: 334 GIENYSRHIDGREAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDASRKRNLIDF 393 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL ++E++ + + +SATPG +ELE G VEQ+IRPTGLVDP + Sbjct: 394 GFRLPSAIDNRPLTWDEFDARKGQCVYMSATPGDYELEAAGGEYVEQVIRPTGLVDPKIV 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ +EI + R+L+T LTK+MAEDLT+YL + IRVRY+HS++ TL+ Sbjct: 454 VKPTKGQIDDLMEEIRQRTDKNERVLVTTLTKKMAEDLTDYLADAGIRVRYLHSDIDTLQ 513 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++RDLRLGK+DVLVGINLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAAR Sbjct: 514 RVELLRDLRLGKYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 573 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YADT+T S+ AIDET RRREKQ+ NK+HNI+PQ +++KI +++D + + Sbjct: 574 NVSGEVHMYADTVTDSMAQAIDETERRREKQIAFNKEHNIDPQPLRKKIADILDQVYDNE 633 Query: 741 A-----------------------------ATTNISIDA----QQLSLSKKKGKAHLKSL 767 + +T++++ DA Q + + L L Sbjct: 634 SEADEHGPGGTTTAGGGAQTSANGNGQKVQSTSSLTSDAALAGDQEPDYTEMTRDDLVRL 693 Query: 768 R----KQMHLAADNLNFEEAARIRDEIKRLK 794 R +QM AA +L FE AAR+RDE+ +K Sbjct: 694 RDDLTRQMGDAARDLKFELAARLRDELVGVK 724 >gi|171743203|ref|ZP_02919010.1| hypothetical protein BIFDEN_02331 [Bifidobacterium dentium ATCC 27678] gi|171278817|gb|EDT46478.1| hypothetical protein BIFDEN_02331 [Bifidobacterium dentium ATCC 27678] Length = 712 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 21 FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 80 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 81 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 140 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK G +++ ELL V QYKR Sbjct: 141 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 200 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 201 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ IKEEL R+ EL K+G+ LEAQRL R TYDLEML G C Sbjct: 260 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 320 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 380 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 439 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 499 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 559 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 618 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A +++ + S S K+ + LK+ L QM Sbjct: 619 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 678 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 679 HTAAEQLQFELAARLRDEIRDLK 701 >gi|237736951|ref|ZP_04567432.1| excinuclease ABC subunit B [Fusobacterium mortiferum ATCC 9817] gi|229420813|gb|EEO35860.1| excinuclease ABC subunit B [Fusobacterium mortiferum ATCC 9817] Length = 667 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/657 (50%), Positives = 471/657 (71%), Gaps = 5/657 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ + Y P GDQP AI ++++ I+ Q+LLGVTGSGKTFT+A +I+ RPA+++ Sbjct: 8 MFKLHSKYTPMGDQPEAIKKIVENINDGIADQVLLGVTGSGKTFTIANIIKETNRPALIL 67 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SSIN++I+++R Sbjct: 68 APNKTLAAQLYSEYKSFFPENAVEYFVSYYDYYQPEAYIAVTDTYIEKDSSINDEIEKLR 127 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +L+ R D I+V+SVS IYG+GS E+Y +M + + + +KEL+ L+ +Y+R Sbjct: 128 QAATAALINRRDVIIVASVSAIYGLGSAETYKKMTIPIDRQTGIGRKELIQRLISIRYER 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378 D+ RG FR+ GD I+I+PS++E +R+ + D+EEISE LTGQKIR N+E I Sbjct: 188 NDLAFERGKFRIKGDVIDIYPSYME-TGYRLEFWDEDLEEISEINTLTGQKIRKNLERIM 246 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY + Y+T + + I+++ + E +G+LLEAQRL+QR YD+EM+ G Sbjct: 247 IYPATQYLTEDGDIERIIAEIQKDKLEEVKAFEDKGKLLEAQRLKQRTEYDIEMIREIGY 306 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSRYL+G+ PGE P TL EY P+D + ++DESH++IPQI GMY GD RK +L Sbjct: 307 CKGIENYSRYLSGKKPGETPDTLLEYFPKDFVTYIDESHISIPQIRGMYNGDRARKESLV 366 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 + GFRL + +DNRPL+FEE+ + T+ VSATPG +E+++ G I EQ+IRPTG++DP Sbjct: 367 DNGFRLKAALDNRPLKFEEFRKITGQTVFVSATPGDFEIQESNGNIAEQLIRPTGILDPE 426 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R + QV+D+ +EI + + R+L+T LTK+MAE+LTEY +RV+YMHS++ T Sbjct: 427 IEVRPTKNQVDDLMEEIRIRVGKNQRVLVTTLTKKMAEELTEYYLGFGLRVKYMHSDIDT 486 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LERI+II+ LR G+FDVLVGINLLREGLDIPE LVAIL+ADKEGFLRS+ SL+QTIGRA Sbjct: 487 LERIDIIKGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 546 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV +VILY D IT S++ AIDET RRR+ Q ++N ++ I+P++V +I E D I L Sbjct: 547 ARNVEGRVILYGDIITDSMKEAIDETNRRRKIQNQYNIENGIDPKTVIREISE--DIINL 604 Query: 739 EDAATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + + S K + + L+K++ + L+FE+A RDE+ +LK Sbjct: 605 DYGLPDEVVKEKDKKVFSSKADIEKEIAKLQKEITKLSKELDFEKAIVKRDEMIKLK 661 >gi|306823048|ref|ZP_07456424.1| excision endonuclease subunit UvrB [Bifidobacterium dentium ATCC 27679] gi|304553680|gb|EFM41591.1| excision endonuclease subunit UvrB [Bifidobacterium dentium ATCC 27679] Length = 712 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 21 FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 80 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 81 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 140 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK G +++ ELL V QYKR Sbjct: 141 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 200 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 201 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ IKEEL R+ EL K+G+ LEAQRL R TYDLEML G C Sbjct: 260 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 320 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G +VEQIIRPTGLVDP ++ Sbjct: 380 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKID 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 439 VRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 499 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 559 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 618 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A +++ + S S K+ + LK+ L QM Sbjct: 619 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 678 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 679 HTAAEQLQFELAARLRDEIRDLK 701 >gi|261338683|ref|ZP_05966567.1| excinuclease ABC subunit B [Bifidobacterium gallicum DSM 20093] gi|270276309|gb|EFA22163.1| excinuclease ABC subunit B [Bifidobacterium gallicum DSM 20093] Length = 703 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/690 (51%), Positives = 470/690 (68%), Gaps = 45/690 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A ++E +QRP +++ Sbjct: 12 FVVKSPYQPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLVERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK+G +E+ +LL + V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLLLKVGQQIERDQLLRTFVDMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ I+ +PLTG I E++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGDVIGEQESVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL R+ +L ++G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMQRALTSIQQELDERVAQLHQQGKELEAQRLSMRTTYDLEMLSQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G +VEQIIRPTGLVDP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGEYELGLSDG-VVEQIIRPTGLVDPRID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI +G R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVEGQIDDLLAEIKDRVAKGERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD IT ++ AI ET RRRE Q+++N +H I+PQ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADDITDAMDKAITETNRRREIQMKYNDEHGIDPQPLIKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQL-----SLSKKKGKAHL------------------------------- 764 +D Q+L + K G +HL Sbjct: 610 -------VDTQELLEGGYRNANKAGNSHLGVPLTDADEAQRRHEELLKAGLPAQDLASLI 662 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L QMH AA+ L FE AAR+RDEI+ LK Sbjct: 663 RQLSDQMHTAAEQLQFELAARLRDEIRDLK 692 >gi|309801200|ref|ZP_07695329.1| excinuclease ABC, B subunit [Bifidobacterium dentium JCVIHMP022] gi|308222089|gb|EFO78372.1| excinuclease ABC, B subunit [Bifidobacterium dentium JCVIHMP022] Length = 706 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 15 FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 75 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 134 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK G +++ ELL V QYKR Sbjct: 135 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 194 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 195 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ IKEEL R+ EL K+G+ LEAQRL R TYDLEML G C Sbjct: 254 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 314 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G +VEQIIRPTGLVDP ++ Sbjct: 374 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKID 432 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 433 VRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 492 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 493 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 552 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 553 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 612 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A +++ + S S K+ + LK+ L QM Sbjct: 613 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 672 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 673 HTAAEQLQFELAARLRDEIRDLK 695 >gi|319951903|ref|YP_004163170.1| uvrabc system protein b [Cellulophaga algicola DSM 14237] gi|319420563|gb|ADV47672.1| UvrABC system protein B [Cellulophaga algicola DSM 14237] Length = 662 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/662 (51%), Positives = 467/662 (70%), Gaps = 13/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP+AI QL++G+++ EK Q LLGVTGSGKTFT+A VIE +Q+P +V+A Sbjct: 3 FKVVSEFKPAGDQPSAIKQLVEGLNTDEKYQTLLGVTGSGKTFTVANVIETVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + YIEK+ SINE I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPSSGLYIEKDLSINEDIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + ++ + + + + L LV+ Y R Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFQKNVISVHKDQVISRTKFLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FRV GD +++FPS+ D A+R+ FG++IEEI F PL K+ + E + I Sbjct: 183 TTADFRNGNFRVKGDVVDVFPSY-ADHAFRIHFFGDEIEEIEAFDPLKNTKLESYENLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+++I+++L ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDILQNAIRHIQDDLVKQIDFFKEVGKPLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTI Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTISQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL+ G+ VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLSDGVFVEQIIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R L+T LTKRMAE+L +YL NIR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLVEEIQQRNEKDERTLVTTLTKRMAEELAKYLDRINIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+++LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQNLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K I+YAD ITKS+Q ID+T RREKQ+ +N KHN+ P+++ + +D +L + Sbjct: 542 RNLNGKAIMYADKITKSMQQTIDDTNYRREKQMAYNAKHNLVPKALNKS----LDSVLAK 597 Query: 740 DAATT-NISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +T + + + + L+K++ + ++ RK M AA L+F +AA++RDEIK Sbjct: 598 NSVSTYHFEKEVARAAEPDLDYLTKEQIEKMIREKRKDMEKAAKELDFMQAAKLRDEIKM 657 Query: 793 LK 794 L+ Sbjct: 658 LQ 659 >gi|110636435|ref|YP_676642.1| excinuclease ABC subunit B [Cytophaga hutchinsonii ATCC 33406] gi|123059095|sp|Q11Z64|UVRB_CYTH3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|110279116|gb|ABG57302.1| Excinuclease ABC subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 673 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/666 (50%), Positives = 464/666 (69%), Gaps = 13/666 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAI QL++G+ + Q+LLGVTGSGKTFTMA VI+ Q+P +V++ Sbjct: 3 FNLTSKYEPTGDQPAAIKQLVEGVERNDPAQVLLGVTGSGKTFTMANVIQQTQKPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP N VEYF+SYYDYYQPEA++P + YIEK+ +IN++I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENLVEYFISYYDYYQPEAFMPTSGLYIEKDLAINQEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SL+ R D IVV+SVSCIYGIG+ E + + IV L G + + +LL S V+ Y R Sbjct: 123 SATSSLMSGRRDIIVVASVSCIYGIGNPEEFRKSIVVLHKGQQINRNKLLYSFVEILYNR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++++P++ D+A+R+ M+G+++E I P TG++I +++ + Sbjct: 183 TTRDFTRGTFRVTGDTVDVYPAY-ADIAYRIQMWGDEVESIQMIEPETGKRISEQKSLTL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT + +LN A+ +I+++L ++ E E R EA+R+++R +D+EM+ G C Sbjct: 242 FPANLFVTGKDSLNNAIHHIQDDLMKQVQLFEMEKRYGEAKRIQERTEFDIEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG+ P L +Y P+D LL VDESHVTIPQI M+ GD RK L E Sbjct: 302 SGIENYSRYFDGRMPGQRPFCLIDYFPDDFLLVVDESHVTIPQIRAMFGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS MDNRPL F+E+ + I VSATP +EL++ +G +VEQIIRPTGL+DP + Sbjct: 362 YGFRLPSAMDNRPLTFDEFESINTQAIYVSATPADYELQRSEGAVVEQIIRPTGLLDPQI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 I+ Q++D+ DEI + G RIL+T LTKRMAE+LT++L +R RY+HSEVKTL Sbjct: 422 FIKPTVNQIDDLLDEIQERIEMGDRILVTTLTKRMAEELTKFLDGVGVRTRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+R+LRLG FDVLVG+NLLREGLD+PE LVAI+DADKEGFLR+ SL+QTIGRAA Sbjct: 482 DRVEILRELRLGVFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRNVRSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N KVI+YAD IT S+Q AIDET+RRR QL +N+ H I P +V + E++ + Sbjct: 542 RNSNGKVIMYADKITASMQQAIDETSRRRATQLAYNELHGITPITVNKSKDEIMGQTKVA 601 Query: 740 DAATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D+ N ++ D L+K + + +K M AA +L+F EAAR RD Sbjct: 602 DSNKFNKQYIEPEGEPSLAADPVVAMLNKTELTKMIDRAKKDMDKAAKDLDFVEAARYRD 661 Query: 789 EIKRLK 794 E+ L+ Sbjct: 662 EMFALQ 667 >gi|291456498|ref|ZP_06595888.1| excinuclease ABC subunit B [Bifidobacterium breve DSM 20213] gi|291381775|gb|EFE89293.1| excinuclease ABC subunit B [Bifidobacterium breve DSM 20213] Length = 703 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L + I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYQPSGDQPQAITELSERIENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK+G + + +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG +I + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+EEL RL EL K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVKGQIDDLLGEIKARVDRNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T +++ AIDET RRR KQ+ +NK+H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRAKQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|152993729|ref|YP_001359450.1| excinuclease ABC subunit B [Sulfurovum sp. NBC37-1] gi|151425590|dbj|BAF73093.1| excinuclease ABC, B subunit [Sulfurovum sp. NBC37-1] Length = 657 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/657 (51%), Positives = 466/657 (70%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAI L+K I S + Q LLGVTGSGKT+TMAKVIE ++P ++M Sbjct: 4 FTVNSPYSPAGDQPAAIDSLVKSIESGNRYQTLLGVTGSGKTYTMAKVIEKTKKPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R+R Sbjct: 64 HNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL +D IV++SVS YG+GS E Y ++ +L +G+ QKELL V YKR Sbjct: 124 STTASLLSHDDVIVIASVSANYGLGSPEDYKTIVQKLVVGEEYNQKELLLKFVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G FRV G+ ++I+P++ ++ A R+ FG+++E I EF LTG+K R+++ + +Y Sbjct: 184 DEFFDIGNFRVSGEVVDIYPAYSDEFAIRIEFFGDEVEAIYEFNSLTGEKNRDLKEVTVY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + ++ + L A+K I+EEL RL +KE R++E RL+QR +DLEM+E TG C+ Sbjct: 244 SANQFIVSKEKLARAVKTIEEELDERLSYFQKEDRMIEYNRLKQRTEFDLEMIEATGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+LTG+ PGE P ++ FE + +D L+ VDESHV++ Q GMY GD RK L Sbjct: 304 GIENYSRHLTGKKPGETPYSMMDYFEAMHDDYLVIVDESHVSLSQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS +DNRPL F+E+ P + VSATP E+E ++ EQ++RPTGL+DP Sbjct: 364 VDHGFRLPSALDNRPLMFDEYINKAPHYLFVSATPAPLEIE-LSSVVAEQVVRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+ + QVE+++D + ++G RIL+TVLTK+MAE+LT Y + ++ RYMHS++ Sbjct: 423 EIEVIDSTYQVENLHDRMKPIIERGERILVTVLTKKMAEELTSYYNDLGLKARYMHSDLD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER ++IR LRLG+FD+LVGINLLREGLD+PE LVAILDADKEGFLRSKTSLIQT GR Sbjct: 483 AIERNQVIRSLRLGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSKTSLIQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N KV++YA +T S++ I+ T +RREKQ+ +NKKH I P + I E+ + Sbjct: 543 AARNANGKVLMYAKKMTDSMKATIETTQQRREKQIVYNKKHGITPTTT---IRELDANLK 599 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +EDA + ++ + K + + +K L+ +M AA NL FEEAAR+RDEI ++K Sbjct: 600 VEDAGEL-YNKRSKLDKMPKAERQQLVKELKAKMLAAAKNLEFEEAARLRDEIAKVK 655 >gi|307153035|ref|YP_003888419.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7822] gi|306983263|gb|ADN15144.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7822] Length = 665 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/664 (52%), Positives = 462/664 (69%), Gaps = 18/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P+GDQP AI QL+ I + Q LLG TG+GKTFT+A IE + RP +V+A Sbjct: 4 FYLQAPFQPTGDQPQAITQLIDSITRGNRFQTLLGATGTGKTFTIAATIEKIGRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH Sbjct: 64 HNKTLAAQLCNELRQFFPDNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + + L++G+ + Q++LL LV QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGMPSEYLKAAISLQVGEEINQRQLLRDLVSVQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FR+ GD +E+ P++ ED RV FG++I+ I P+TGQ + +++ I +Y Sbjct: 184 DLELQRGRFRLRGDVLELVPAY-EDRIIRVEFFGDEIDAIRYLDPVTGQILHSLDRINVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A + I+ EL+ R+ ELEK+G+LLEAQRL QR YDLE+L G C Sbjct: 243 PARHFVTPDDQLEAACQAIELELEERVEELEKQGKLLEAQRLGQRCRYDLELLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR GEPP L +Y P+D LL +DESHVT+PQI GMY GD RK L E+ Sbjct: 303 GVENYSRHLAGRQAGEPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQSRKKVLIEH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+ EE+ + VSATPG WE+EQ +G ++EQIIRPTG++DP + Sbjct: 363 GFRLPSAADNRPLKAEEFWQKVNQCVFVSATPGDWEIEQSEGRVMEQIIRPTGVLDPEIF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI + ++ R+L+T LTKRMAEDLTEY ER I+V+Y+HSE+ ++E Sbjct: 423 VRPTEGQVDDLLGEIKVRVKRNERVLITTLTKRMAEDLTEYFQERGIKVQYLHSEITSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+++LR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRAAR Sbjct: 483 RIEILQNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 ++ + ILY D +T S+ A++ET RRR Q+ +NK+H I PQ + ++ I L Sbjct: 543 HIQGQAILYGDNLTDSMLKAMEETERRRNIQIAYNKRHGITPQPIIKRSSNAILSFL--- 599 Query: 741 AATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +IS ++AQQL L +K + L +M AA L FEEAA+ RD I Sbjct: 600 ----DISRRLNAQQLEQVYEQADELPLEKVPELIGQLEDKMKEAAKKLEFEEAAKYRDRI 655 Query: 791 KRLK 794 + L+ Sbjct: 656 QHLR 659 >gi|255993949|ref|ZP_05427084.1| excinuclease ABC subunit B [Eubacterium saphenum ATCC 49989] gi|255993617|gb|EEU03706.1| excinuclease ABC subunit B [Eubacterium saphenum ATCC 49989] Length = 653 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/648 (50%), Positives = 460/648 (70%), Gaps = 6/648 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQ AI +L KGI + Q L+GVTGSGKTFTMA +IE Q+P +V++ Sbjct: 3 FKLHSKFSPMGDQKPAIEKLAKGIEEGRRHQTLMGVTGSGKTFTMAGLIEKAQKPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYF+SYYDYYQPEAY+P TDT+I+K++S N +ID++RH Sbjct: 63 HNKTLAGQLYGEFKEFFPENAVEYFISYYDYYQPEAYIPSTDTHIDKDASTNFEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS Y ++ +++G+ + E+L LV+ QY R Sbjct: 123 SATASLAERRDVIIVASVSCIYGLGSPFDYETQMLSIRLGEEKSRDEILKKLVEIQYHRA 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG+FRV GD I+I+PS E+ R+ MFG++IE+I E +TG+ + + I IY Sbjct: 183 DIDFSRGSFRVRGDVIDIYPSGSEN-PVRIEMFGDEIEDIREMNAVTGKLLGRRKHIAIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY++ L++A+ I ++L RL ++ G+ LEAQRLE+R YD+E++ G+C+ Sbjct: 242 PATHYISTPDKLSSAITQISKDLGERLKWFKENGKFLEAQRLEERTRYDIELINEMGTCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+RY+ G GE P TL +Y P+D L +DESHV +PQ+ MY GD RK TL +Y Sbjct: 302 GIENYARYINGLKEGERPYTLIDYFPDDFLTIIDESHVMLPQLRAMYAGDRSRKTTLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ +DNRPL+F E+ L + VSATP +E E+ GI EQIIRPTGL++P ++ Sbjct: 362 GFRLPAALDNRPLKFSEFEELVNQVVYVSATPAEYEKEKSGGITCEQIIRPTGLLEPEID 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN A++G R+L+T LTK+MAE L+ +L + +I+ YMHS++ +E Sbjct: 422 VRPIEGQIDDLIGEINKVAERGERMLITTLTKKMAESLSAFLIDADIKACYMHSDIDAIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIR+LRLGK+DVL+GINLLREGLDIPE +VAILDADKEGFLR++TSLIQTIGRAAR Sbjct: 482 RMEIIRELRLGKYDVLIGINLLREGLDIPEVSVVAILDADKEGFLRTETSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VILYAD I+ +++ A+DETTRRR+ Q +N++HNI P+S+++ I E I+ + + Sbjct: 542 NANGRVILYADGISNAMKNAMDETTRRRKIQQRYNEEHNITPKSIQKDIRESIEATIEVE 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + +SKK+ K + K+M AA +L FE AA +R+ Sbjct: 602 EEELK-----KPQEMSKKELSDFTKKIEKEMKQAAKDLQFERAAELRE 644 >gi|212716119|ref|ZP_03324247.1| hypothetical protein BIFCAT_01034 [Bifidobacterium catenulatum DSM 16992] gi|212661486|gb|EEB22061.1| hypothetical protein BIFCAT_01034 [Bifidobacterium catenulatum DSM 16992] Length = 711 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L + I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 20 FVVKSPYKPSGDQPKAIEELAERIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 79 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 80 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 139 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL + V QYKR Sbjct: 140 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDDLLRTFVAMQYKRN 199 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 200 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIGHQSQVHIF 258 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL R EL K+G+ LEAQRL R TYDLEML G C Sbjct: 259 PASHYVAGPQRMERALSTIQQELDQRTAELRKQGKELEAQRLTMRTTYDLEMLSQVGVCS 318 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 319 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 378 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 379 GFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 437 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R+L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 438 VRPVDGQIDDLLAEIKDRVNRNERVLITTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 497 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 498 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 557 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD IT+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 558 NVSGTVIMYADDITEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 617 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A +++ + A S ++ + LK+ L +QM Sbjct: 618 VDTQTLLGTGYRNADKAGNSHLGVPATSKEESDRRHEEILKAGLPAQDLADLIRQLSEQM 677 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 678 HTAAEQLQFELAARLRDEIRDLK 700 >gi|57234749|ref|YP_181185.1| excinuclease ABC subunit B [Dehalococcoides ethenogenes 195] gi|90110883|sp|Q3Z9B4|UVRB_DEHE1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|57225197|gb|AAW40254.1| excinuclease ABC, B subunit [Dehalococcoides ethenogenes 195] Length = 668 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/657 (51%), Positives = 465/657 (70%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ +GDQP A+ +L +G+ Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 4 FKIVSDFALTGDQPQAVEKLSEGLAHGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK++ INE+ID++RH Sbjct: 64 HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+L ER D ++V+SVSCIYG+G E Y ++ LK G S+ + +L LV QY+R Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLILRRLVDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FR+ GD++EI P++ E++A RV FG++IE I P++G+ + +++ I IY Sbjct: 184 DIDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIDEINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + A+K I+ EL+ RL ELE EG++LEA RL+QR YDLEM++ G C Sbjct: 243 PAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMQQAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G P TL +Y PED LL VDESH+++PQI GMY GD RK TL +Y Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F+E+ I VSATPG +E E Q +VEQ++RPTGL++P + Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSQQ-VVEQLVRPTGLLEPVIT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +E+ + R+L+T LTK+M+E L +YL E I+ Y+HSEV TLE Sbjct: 422 VKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+ +LIQT+GRAAR Sbjct: 482 RVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +VI+YAD IT S+Q A+DE +RRR+ Q ++N+ HNI PQ +++ I ++ + I Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + T +S + + + ++ L K L QM AA NL FE AA IRD + L+++ Sbjct: 599 SVTAEVSGPEFRPAPTLREDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655 >gi|296111253|ref|YP_003621635.1| excinuclease ABC subunit B [Leuconostoc kimchii IMSNU 11154] gi|295832785|gb|ADG40666.1| excinuclease ABC subunit B [Leuconostoc kimchii IMSNU 11154] Length = 627 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/627 (51%), Positives = 454/627 (72%), Gaps = 6/627 (0%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 +LG TG+GKTFT++ VI+++++P +V++ NK LA QLYSE K FFP+NAVEYFVSYYDYY Sbjct: 1 MLGATGTGKTFTISNVIKSVKKPTLVLSHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYY 60 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYVP +DT+IEK+S++N++ID++R+SAT SLL RND IVV+SVS I+G+G Y + Sbjct: 61 QPEAYVPSSDTFIEKDSAVNDEIDQLRNSATSSLLSRNDVIVVASVSSIFGLGDPHQYQE 120 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 ++ L++G+ + +L+ L+ Q+ R DI RGTFRV GD +EIFP+ +++A RV Sbjct: 121 HVINLRVGNEYGRDQLMRDLIDVQFTRNDIDFHRGTFRVRGDVMEIFPASEDEMALRVEF 180 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++I+ I E LTG+ + + IY H++T + TA+ IK+E+ ++ E Sbjct: 181 FGDEIDRIREINSLTGETSSERDFVAIYPAKHFMTDDDQMRTALAGIKQEMLAQVALFES 240 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EG+L+EAQR++QR YDL MLE G IENYSR++ GR PGEPP TL ++ P+D L+ Sbjct: 241 EGKLIEAQRIKQRTEYDLSMLEEMGFVGGIENYSRWMDGRQPGEPPFTLLDFFPDDFLIV 300 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 DESHVT+PQ+ GM+ GD RK TL YGFRLPS +DNRPL+ E+ I +SATP Sbjct: 301 ADESHVTMPQVRGMFNGDKARKETLVNYGFRLPSALDNRPLKLPEFEKHVNQIIYMSATP 360 Query: 533 GSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 G +ELE+ + + +QIIRPTGL+DP +E+R Q++D+ EIN A + R+ +T LT Sbjct: 361 GDYELERVTENHVAQQIIRPTGLLDPEIEVRPVMGQIDDLVGEINQRASKDERVFITTLT 420 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 KRMAEDLT+YL I+V Y+H+++KTLER EIIRDLRLGK+DVL+GINLLREG+D+PE Sbjct: 421 KRMAEDLTDYLKNVGIKVAYLHADIKTLERTEIIRDLRLGKYDVLIGINLLREGIDVPEV 480 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711 LVAILDADKEGFLR+ SLIQTIGRAARN N VI+YAD +T+S+Q AIDET RRRE Q Sbjct: 481 SLVAILDADKEGFLRNPRSLIQTIGRAARNANGHVIMYADKVTRSMQSAIDETARRRESQ 540 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLR 768 L++N K+ I P ++K++I ++I + D+ ++D Q++ L K + ++ + ++ Sbjct: 541 LQYNSKNGITPTTIKKEIRDLIS--VRTDSTDGQATVDLTQVAFKDLPKDEQQSIIANME 598 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKS 795 QM AA +L+FEEAA++RD + LK+ Sbjct: 599 SQMKAAAKSLDFEEAAQLRDSVMELKA 625 >gi|227546156|ref|ZP_03976205.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621802|ref|ZP_04664833.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133005|ref|YP_004000344.1| uvrb [Bifidobacterium longum subsp. longum BBMN68] gi|317481891|ref|ZP_07940918.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA] gi|322688833|ref|YP_004208567.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis 157F] gi|322690821|ref|YP_004220391.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum JCM 1217] gi|227213137|gb|EEI81009.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514993|gb|EEQ54860.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517106|emb|CBK70722.1| Excinuclease ABC subunit B [Bifidobacterium longum subsp. longum F8] gi|311773991|gb|ADQ03479.1| UvrB [Bifidobacterium longum subsp. longum BBMN68] gi|316916682|gb|EFV38077.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA] gi|320455677|dbj|BAJ66299.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum JCM 1217] gi|320460169|dbj|BAJ70789.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis 157F] Length = 703 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/683 (51%), Positives = 471/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AIA+L + I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK+G + + +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG +I + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+EEL RL EL K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +E+ G +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|119025694|ref|YP_909539.1| excinuclease ABC subunit B [Bifidobacterium adolescentis ATCC 15703] gi|118765278|dbj|BAF39457.1| UvrABC system protein B [Bifidobacterium adolescentis ATCC 15703] Length = 696 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/685 (51%), Positives = 468/685 (68%), Gaps = 35/685 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 5 FVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 65 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL V QYKR Sbjct: 125 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDDLLRKFVDMQYKRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 185 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESQVHIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I++EL R EL K+G+ LEAQRL R TYDLEML G+C Sbjct: 244 PASHYVAGAERMERALKTIQQELDERTAELHKQGKELEAQRLTMRTTYDLEMLSQVGTCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 304 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 364 GFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 423 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 483 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YAD IT++++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 543 NVSGTVVMYADDITEAMRKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769 T + + K G +HL + L + Sbjct: 603 VDTQTLL--GTGYRNADKAGNSHLGVPHTSKEESGRRHEEILKAGLPAQDLADLIRQLSE 660 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QMH AA+ L FE AAR+RDEI+ LK Sbjct: 661 QMHTAAEQLQFELAARLRDEIRDLK 685 >gi|83815715|ref|YP_445286.1| excinuclease ABC subunit B [Salinibacter ruber DSM 13855] gi|83757109|gb|ABC45222.1| excinuclease ABC, B subunit [Salinibacter ruber DSM 13855] Length = 691 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/668 (51%), Positives = 472/668 (70%), Gaps = 18/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++D+ P GDQP AI +L+ G+ ++ Q LLG TG+GKTFT+A VIE + +P +VM+ Sbjct: 12 FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYF+SYYDYYQPE+Y+ DTYIEK+ +IN++I+R+R Sbjct: 72 HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT L+ R+D IVV+SVSCIYG+GS + + I+ L+ G VE+ +LL + Y+R Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFQKEILPLERGLEVERNDLLRRFIDLFYER 191 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI GTFRV GD ++IFP++ E++A R+ +G++I+ ++ F P +G+++ V + Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYREEIALRIEFWGDEIDRLALFEPESGRELEEVNQFTL 251 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +VTP L A++ IKEEL+ RL L +EG+++EAQRLEQR +DLEM++ G C Sbjct: 252 YPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVGYC 311 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR PGE P L +Y P+D +L VDESHVTIPQ+ MY GD RK L E Sbjct: 312 SGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKLVE 371 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL FEE+ L P TI +SATP +ELEQ G+ VEQ++RPTG+ DP V Sbjct: 372 HGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDPEV 431 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R QV+D+ +EI A++G R+L+T LTKRM EDL +YL + VR+MHS++ L Sbjct: 432 DVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDIDAL 491 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++IIR LRLG++DVLVG+NLLREGLD+PE LVAILDAD++GFLRS+TSLIQT GRAA Sbjct: 492 ERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGRAA 551 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738 RNVN +VILYAD IT ++Q IDET RRRE+QLE+N+ H++ P+ +++ E+ + Sbjct: 552 RNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTAIA 611 Query: 739 ------EDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEE 782 E++ + + QLS LS+ + + + +R++M AA+NL FE Sbjct: 612 DEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEFER 671 Query: 783 AARIRDEI 790 AA +RD I Sbjct: 672 AAELRDSI 679 >gi|294507156|ref|YP_003571214.1| UvrABC system protein B [Salinibacter ruber M8] gi|294343484|emb|CBH24262.1| UvrABC system protein B [Salinibacter ruber M8] Length = 691 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/668 (51%), Positives = 472/668 (70%), Gaps = 18/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+++D+ P GDQP AI +L+ G+ ++ Q LLG TG+GKTFT+A VIE + +P +VM+ Sbjct: 12 FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEYF+SYYDYYQPE+Y+ DTYIEK+ +IN++I+R+R Sbjct: 72 HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT L+ R+D IVV+SVSCIYG+GS + + I+ L+ G VE+ +LL + Y+R Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFRKEILPLERGLEVERNDLLRRFIDLFYER 191 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI GTFRV GD ++IFP++ E++A R+ +G++I+ ++ F P +G+++ V + Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYREEIALRIEFWGDEIDRLALFEPESGRELEEVNQFTL 251 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +VTP L A++ IKEEL+ RL L +EG+++EAQRLEQR +DLEM++ G C Sbjct: 252 YPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVGYC 311 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR PGE P L +Y P+D +L VDESHVTIPQ+ MY GD RK L E Sbjct: 312 SGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKLVE 371 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL FEE+ L P TI +SATP +ELEQ G+ VEQ++RPTG+ DP V Sbjct: 372 HGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDPEV 431 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R QV+D+ +EI A++G R+L+T LTKRM EDL +YL + VR+MHS++ L Sbjct: 432 DVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDIDAL 491 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++IIR LRLG++DVLVG+NLLREGLD+PE LVAILDAD++GFLRS+TSLIQT GRAA Sbjct: 492 ERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGRAA 551 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738 RNVN +VILYAD IT ++Q IDET RRRE+QLE+N+ H++ P+ +++ E+ + Sbjct: 552 RNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTAIA 611 Query: 739 ------EDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEE 782 E++ + + QLS LS+ + + + +R++M AA+NL FE Sbjct: 612 DEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEFER 671 Query: 783 AARIRDEI 790 AA +RD I Sbjct: 672 AAELRDSI 679 >gi|86142267|ref|ZP_01060777.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217] gi|85831019|gb|EAQ49476.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217] Length = 666 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/655 (51%), Positives = 459/655 (70%), Gaps = 5/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+++ P+GDQP AI QL+ GI + E+ Q LLGVTGSGKTFT+A V++ +Q+P +V+A Sbjct: 3 FNIQSEFKPTGDQPGAIEQLVGGIDAGERYQTLLGVTGSGKTFTVANVLQEVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + ++ L+ + + +LL LV+ Y R Sbjct: 123 STTSSLLSGRRDIIVVASVSCLYGIGNPVEFQKNVIALERDMVISRTQLLKRLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RG FR+ GD+++I+P + +D A+RV FG++IEEI F T + + + + I Sbjct: 183 TTAEFNRGNFRIKGDTVDIYPGY-DDHAFRVHFFGDEIEEIEAFDVTTNEVLEKYDRLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I ++ ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQNAIDQIGFDMVKQVEYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+ Q+S MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVSAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++ +G VEQIIRPTGL+DP V Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPIV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R L+T LTKRMAE+LT+YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQKRVEKDERTLVTTLTKRMAEELTKYLTRVDIRTRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QTIGRAA Sbjct: 482 ERVEIMSDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736 RN+N I+YADTIT+S+Q ID + RR+KQ+ +N+KH + P ++K+ + + + Sbjct: 542 RNINGLAIMYADTITRSMQETIDTSEYRRQKQIAYNEKHGLKPMAIKKSLDNALAKKEKF 601 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 E TN++ + +SK K + ++ RKQM AA L+F EAA++RD IK Sbjct: 602 KFEAEELTNVAAEPDTAYMSKPKLEKLIRDTRKQMEAAAKELDFMEAAKLRDRIK 656 >gi|311064144|ref|YP_003970869.1| excinuclease ABC subunit B [Bifidobacterium bifidum PRL2010] gi|310866463|gb|ADP35832.1| UvrB Excinuclease ABC subunit B [Bifidobacterium bifidum PRL2010] Length = 703 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIEELSTRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKFVDMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIDHETSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K IKEEL R+ EL+K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ R PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPTKGQVDDLLAEIKDRVDKNERTLVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + + K+ + LK+ L +QM Sbjct: 610 VDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|260062196|ref|YP_003195276.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501] gi|88783758|gb|EAR14929.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501] Length = 662 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/662 (51%), Positives = 464/662 (70%), Gaps = 13/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQPAAIAQL GI ++ Q LLGVTGSGKTFT+A V+E +QRP +V+A Sbjct: 3 FKVVSEFQPTGDQPAAIAQLSGGIREGDRYQTLLGVTGSGKTFTVANVVEQVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + YIEK+ SINE I+++R Sbjct: 63 HNKTLAAQLYSEFKMFFPENAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +VV+SVSC+YGIG+ + + ++ L+ + + L+ LV+ Y R Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVIHLERDQVLARTRLMHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FRV GD +++FP + D A+R+ FG++IE I F P + I ET+ I Sbjct: 183 TTADFRNGNFRVRGDVLDVFPGY-ADHAFRIHFFGDEIEAIEAFDPYNNKVIEEYETLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQEAIHKIQDDLTAQVAYFKEIGKPLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTIPQ+ MY GD RK L Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTIPQVHAMYGGDRSRKENLVN 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +E++Q G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQQSGGVYVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L Q+ R L+T LTKRMAE+LT+YL ++R RY+HS+V TL Sbjct: 422 EVRPSENQIDDLVEEIQLRVQRDERTLVTTLTKRMAEELTKYLTRIDVRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVLVG+NLLREGLD+PE LVAI+DADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R++ K I+YADT+T S+Q IDET RR+KQL++NK+H I P+++K+ +D +L Sbjct: 542 RHLQGKAIMYADTVTDSMQKTIDETNYRRQKQLDYNKEHGITPRALKKN----LDSVLAR 597 Query: 740 DAATT----NISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +T DA++ L+K++ + ++ RK M AA +L+F +AA++RDEIK Sbjct: 598 NSVSTFHFEKKERDAREPDPAYLTKEQKEELIRKKRKDMERAAKDLDFMQAAKLRDEIKV 657 Query: 793 LK 794 L+ Sbjct: 658 LQ 659 >gi|37521424|ref|NP_924801.1| excinuclease ABC subunit B [Gloeobacter violaceus PCC 7421] gi|81834371|sp|Q7NJH7|UVRB_GLOVI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|35212421|dbj|BAC89796.1| excinuclease ABC subunit B [Gloeobacter violaceus PCC 7421] Length = 680 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/675 (52%), Positives = 456/675 (67%), Gaps = 27/675 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQP AIAQL G Q LLG TG+GKTFT+A VIE + +P +V+A Sbjct: 6 FVVSAPYRPTGDQPRAIAQLSAGALGGVTFQTLLGATGTGKTFTIANVIEKVGKPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK +SIN++ID +RH Sbjct: 66 HNKTLAAQLCNELREFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKSASINDEIDMLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+SVSCIYG+G E Y + + LK+G +++Q+ELL LV QY+R Sbjct: 126 SATRSLFERRDVIVVASVSCIYGLGMPEEYLRAAIPLKVGSNIDQRELLRQLVTVQYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD +EI P++ ED RV FG+++E + P+TG+ +R+V ++ IY Sbjct: 186 DIDLGRGRFRVRGDVVEIGPAY-EDRIIRVEFFGDEVEAVRWLDPVTGEVVRSVNSLNIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A I++EL+ R+ ELE E +LLEAQR++QR YDLEML G C Sbjct: 245 PAKHFVTPEEQLEQACIAIEQELEARVAELEGENKLLEAQRIKQRTRYDLEMLREVGYCN 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L R PGE P L +Y P+D LL VDESHVTIPQI GMY GD RK L ++ Sbjct: 305 GVENYSRHLAARRPGEAPSCLIDYFPQDWLLVVDESHVTIPQIRGMYNGDAQRKKVLIDH 364 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGI------------IVEQ 547 GFRLPS DNRPL+ E W+ +R I VSATPG WE+E G + EQ Sbjct: 365 GFRLPSAADNRPLKAPEFWDKVR-QAIFVSATPGDWEVELSGGGRDPETGRMAGEHVAEQ 423 Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 IIRPTG++DP V +R QV+D+ EI+ + R+L+T LTKRMAEDLTEY ER + Sbjct: 424 IIRPTGVLDPEVFVRPVAGQVDDLLHEIHDRVARRERVLVTTLTKRMAEDLTEYFQERGV 483 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +VRY+HSE++ +ERIEI++ LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ Sbjct: 484 KVRYLHSEIQAIERIEILQALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRA 543 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727 + SLIQTIGRAAR+V +VI+YAD +T S+ AI ET RRR+ Q +N H + PQ + + Sbjct: 544 ERSLIQTIGRAARHVRGQVIMYADRLTASMDKAISETERRRQIQRAYNAAHGLTPQPIVK 603 Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLN 779 + +D + D + ++ Q+L + + L QM AA L Sbjct: 604 R----LDANSILDYLAVSRRLNQQELEAAAAAPAEVALADIPELVSQLEIQMRDAAKKLE 659 Query: 780 FEEAARIRDEIKRLK 794 FE+AA RD+I +L+ Sbjct: 660 FEKAAEYRDKIHKLR 674 >gi|229826544|ref|ZP_04452613.1| hypothetical protein GCWU000182_01919 [Abiotrophia defectiva ATCC 49176] gi|229789414|gb|EEP25528.1| hypothetical protein GCWU000182_01919 [Abiotrophia defectiva ATCC 49176] Length = 663 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/654 (52%), Positives = 463/654 (70%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI +L++G + Q LLGVTGSGKTFTMA VI + P +V++ Sbjct: 4 FILHSEYAPTGDQPQAIEELVEGFKEGNQFQTLLGVTGSGKTFTMANVIAKLNLPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 64 HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D +VVSSVSCIYG+G Y M + ++ G + +E++ L+ QY R Sbjct: 124 SATAALSERKDVVVVSSVSCIYGLGDPIDYEDMTLSVRPGQIKDMEEVIRRLIDIQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFR+ GD +EIFP D A R+ FG++I+ ISE LTG + + + I+ Sbjct: 184 DMDFKRGTFRIRGDVVEIFPVASTDKAVRLEFFGDEIDRISEIDVLTGTTVAELAHVVIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A SHYV + A+ ++EEL +R+ + E +L+EAQR+++R +D+EM+ TG C Sbjct: 244 AASHYVVAPEKMKEALSRLEEELDLRVKYFKSEDKLIEAQRIKERTNFDIEMMRETGFCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR G P TL +Y P++ L+ VDESH+TIPQI GMY GD RK TL +Y Sbjct: 304 GIENYSGPLSGRPSGSMPFTLIDYFPDEFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + VSATP +E + + + EQIIRPTGLVDP + Sbjct: 364 GFRLPSALDNRPLNFTEFENKIDRMLFVSATPSEYEAKH-ELLRTEQIIRPTGLVDPEII 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ E+ ++ ++L+T LTK+MAEDLT+Y+ E IRVRY+HS++ TLE Sbjct: 423 VKPTAGQIDDLISEVKKETEKKNKVLVTTLTKKMAEDLTDYMREAGIRVRYLHSDIDTLE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIRD+RL FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 483 RSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+YADTIT S+ AI ET RRR Q+++N++H + PQ++K+K+ ++I + Sbjct: 543 NADGHVIMYADTITGSMNRAITETERRRAIQMKYNEEHGVVPQTIKKKVRDLISISKKVE 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ I DA+ S+S+ + KA +K L K+M+ AA LNFE AA++RDEI LK Sbjct: 603 EDSSKIIKDAE--SMSEAELKAVIKELTKKMNQAAVELNFETAAKLRDEIIELK 654 >gi|312130377|ref|YP_003997717.1| excinuclease abc, b subunit [Leadbetterella byssophila DSM 17132] gi|311906923|gb|ADQ17364.1| excinuclease ABC, B subunit [Leadbetterella byssophila DSM 17132] Length = 674 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/666 (50%), Positives = 463/666 (69%), Gaps = 13/666 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + + P+GDQP AI QL+ + S EK +LLGVTGSGKTFT+A VI+ + P ++++ Sbjct: 3 YKLTSAFQPTGDQPQAIEQLVASVQSGEKATVLLGVTGSGKTFTIANVIQRLDMPVLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ T+TYIEK+ IN++ID++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAYIATTNTYIEKDLMINQEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S SL+ R D IVV+SVSCIYG G+ + Q IV++ +GD++ + LL LV Y R Sbjct: 123 STVSSLMSGRKDVIVVASVSCIYGAGNPNEFKQSIVKVGVGDTISRNRLLYDLVAILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + RGTFRV GD+++I+P + D A R+ +G+++EEI P +G+KI++ I I Sbjct: 183 TEAEFNRGTFRVKGDTVDIYPGY-ADFAIRIIFWGDEVEEIQTIDPHSGKKIKSETKISI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT + L T+++ I+++L ++ E EGR +EA+R+++R +DLEM+ G C Sbjct: 242 FPANLFVTGKDALQTSIRQIQDDLVTQIKYFESEGRQIEAERIQERTEFDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PGE P L +Y +D LL VDESHV+IPQI MY GD RK +L E Sbjct: 302 NGIENYSRYFDRRMPGERPFCLLDYFQDDFLLVVDESHVSIPQIGAMYGGDRSRKTSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL F+E+ L P TI VSATP ++EL + G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPSALDNRPLTFQEFEQLTPQTIYVSATPANYELNKAGGVVVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EIN ++ R L+T LTKRMAE+L+ YL I+V Y+HSE+KT+ Sbjct: 422 EVRPSLNQIDDLLEEINDRIKKEERTLVTTLTKRMAEELSRYLERIGIKVAYIHSEIKTM 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+R+LRLG DVLVG+NLLREGLD+PE LVAI+DADKEGFLR SLIQTIGRAA Sbjct: 482 DRVEILRELRLGTIDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDNRSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME----- 731 RN N KVI+YAD IT S+Q AIDET RRR Q+E+NK H I P+++ KE IME Sbjct: 542 RNSNGKVIMYADKITGSMQQAIDETQRRRAIQMEYNKAHGITPKTILKSKEAIMEQTSIA 601 Query: 732 ---VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + + NI+ D ++K++ + ++ + M AA LNF +AAR RD Sbjct: 602 DFKAVPKSYYVEPDKANIAADPVVAYMNKEQLEKLMQEAKSNMEKAASELNFLQAARYRD 661 Query: 789 EIKRLK 794 E+ +L+ Sbjct: 662 EMLQLQ 667 >gi|298491889|ref|YP_003722066.1| excinuclease ABC subunit B ['Nostoc azollae' 0708] gi|298233807|gb|ADI64943.1| excinuclease ABC, B subunit ['Nostoc azollae' 0708] Length = 665 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/663 (51%), Positives = 461/663 (69%), Gaps = 8/663 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F +Q + P+GDQP AIAQL+ I + + Q LLG TG+GKTF++A VIE +++P + Sbjct: 1 MTEFSLQAPFSPTGDQPQAIAQLITSIEAGNRYQTLLGATGTGKTFSIAAVIEKVRKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID Sbjct: 61 VLAHNKTLAAQLCNEMREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RHSATRSL ER D IVV+S+SCIYG+G Y + + L+IG V+Q+++L L QY Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAIPLQIGMEVDQRQILRDLTSVQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ + +++ + Sbjct: 181 SRNDVEMGRGKFRVRGDLLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILSSLQAV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y H++TP L A + I ELK + + LE+ G+L+EAQR++QR YDLEML Sbjct: 240 NVYPARHFITPEQRLEVACEDISAELKQQKLALEELGKLVEAQRIDQRTRYDLEMLREVR 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENYSR+L GR GEPP L +Y P+D LL +DESHVT+PQI GMY GD RK L Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLLDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLPS DNRPL+ EE+ I VSATPG+WE+E + I+EQ+IRPTG+VDP Sbjct: 360 IDHGFRLPSAADNRPLKAEEFWQKANQCIFVSATPGNWEVEVSEDNIIEQVIRPTGVVDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 V +R QV+++ EI + R L+T LTKRMAEDLTEYL + ++VRY+HSE+ Sbjct: 420 EVLVRPTEGQVDNLLGEIKDRVELKERTLITTLTKRMAEDLTEYLEHKGVQVRYLHSEIN 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +++RIEI++DLR GKFDVLVG+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGR Sbjct: 480 SIQRIEILQDLRNGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AAR++ KVI+YAD +T S+ AIDET RRR Q +NK + I P+ V +K I L Sbjct: 540 AARHIQGKVIMYADKLTDSMIKAIDETDRRRGIQTAYNKMYGITPKPVVKKSSNAILSFL 599 Query: 738 LEDAA----TTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 D + T ++ + + L L + + L KQM AA + FEEAA++RD IK Sbjct: 600 --DVSRRLNTRDLKVVDKHLDELWLEDIPELITLLEKQMKEAAKKMEFEEAAKLRDRIKH 657 Query: 793 LKS 795 L+ Sbjct: 658 LRG 660 >gi|310287296|ref|YP_003938554.1| Excinuclease ABC subunit B [Bifidobacterium bifidum S17] gi|309251232|gb|ADO52980.1| Excinuclease ABC subunit B [Bifidobacterium bifidum S17] Length = 703 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKFVGMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIDHETSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K IKEEL R+ EL+K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ R PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPTKGQIDDLLAEIKDRVDKNERTLVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + + K+ + LK+ L +QM Sbjct: 610 VDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|328949674|ref|YP_004367009.1| UvrABC system protein B [Marinithermus hydrothermalis DSM 14884] gi|328449998|gb|AEB10899.1| UvrABC system protein B [Marinithermus hydrothermalis DSM 14884] Length = 667 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/647 (52%), Positives = 460/647 (71%), Gaps = 9/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AI L++G+ + LLG TG+GKT TMAKVIEAM RPA+V+APNK+LAAQ Sbjct: 9 PKGDQPEAIRALVEGLTDGARFLTLLGATGTGKTVTMAKVIEAMARPALVLAPNKVLAAQ 68 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK+++IN +I+R+RHS TRSLL Sbjct: 69 LVAEFRELFPENAVEYFISYYDYYQPEAYVPGRDLYIEKDAAINPEIERLRHSTTRSLLT 128 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+G+ E Y M + ++ G + ++ L+ +V+ Y+R ++ + G Sbjct: 129 RRDVIVVASVSAIYGLGNPEDYRAMHLVVEAGATYPREALIERMVELFYERNEVELQPGR 188 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+++E++P++ + R+ ++G++I+ IS +P+TG++++ + +Y +HY TP Sbjct: 189 FRAKGETLEVWPAY-DTEPVRIELWGDEIDRISVVHPVTGERLKELPGFVLYPATHYATP 247 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 L A++ I++EL+ RL ELE +G+LLEAQRL++R YDLEML G C+ IENY+R+ Sbjct: 248 EARLAPAIRAIEQELEERLKELEAQGKLLEAQRLKERTLYDLEMLRLMGHCKGIENYARH 307 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 L+GR PGEPP TL +Y PED L F+DESHV++PQ+ GMY GD+ RK L EYGFRLPS + Sbjct: 308 LSGRAPGEPPYTLLDYFPEDFLTFIDESHVSVPQLRGMYNGDYQRKRILVEYGFRLPSAL 367 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ + VSATPG +ELE + VEQIIRPTGL+DP V ++ Q+ Sbjct: 368 DNRPLRFEEFLERTGQIVFVSATPGPFELEHSDRV-VEQIIRPTGLLDPKVTVKPTEGQI 426 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 ED+ + A +G R+L+TVLTKRMAEDLT YL E +R RYMH E+ ER +IRDL Sbjct: 427 EDLIGAVRERAARGERVLVTVLTKRMAEDLTAYLTEHGVRARYMHHELDAFERQALIRDL 486 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG FDVLVGINLLREGLDIPE LVAILDADK GFLRS+ SLIQTIGRAARN +V L Sbjct: 487 RLGHFDVLVGINLLREGLDIPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAAGEVFL 546 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YAD I+++++ AI+ET RRR KQ +NK H I PQ++++ + ++ P +A + Sbjct: 547 YADQISEAMRAAIEETRRRRAKQEAYNKAHGITPQTIRKAVRAIVKPEDFGEAVLEAVGE 606 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D + L K + +L +M A++ L+FE AA +RD I+ L++ Sbjct: 607 DPEDL-------KEQIAALELEMWRASEALDFERAAELRDRIRALEA 646 >gi|229817850|ref|ZP_04448132.1| hypothetical protein BIFANG_03136 [Bifidobacterium angulatum DSM 20098] gi|229784750|gb|EEP20864.1| hypothetical protein BIFANG_03136 [Bifidobacterium angulatum DSM 20098] Length = 703 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L GD +E+ +LL + V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIERDDLLRTFVDMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 192 DIAFTRGIFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESEVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+ EL R+ EL+K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMARALKSIRAELDDRVAELKKQGKDLEAQRLSMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP +E Sbjct: 371 GFRLPSAMDNRPLKWPEFQRRIGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL E I+V Y+HS+V TL Sbjct: 430 VRPIEGQIDDLLGEIKARVARNERALVTTLTKKMAEDLTDYLLEHGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YAD IT+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 550 NVDGTVLMYADNITEAMHEAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++S+ + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLSVPTLDEDEANKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|332299257|ref|YP_004441178.1| UvrABC system protein B [Porphyromonas asaccharolytica DSM 20707] gi|332176320|gb|AEE12010.1| UvrABC system protein B [Porphyromonas asaccharolytica DSM 20707] Length = 677 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/671 (51%), Positives = 457/671 (68%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ ++RP +V++ Sbjct: 3 FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVERPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+ TDTYIEK+ +IN ++D++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVV+SVSCIYG+ + + I++L++G +E+ L+ L + Y Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G+FRV GD+I+IFP+ E VA+R+ ++ ++I+ I+ P++ + ++++ Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDDEIDRITIIDPVSAESQGTLDSL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +IY + +VT A+ IK++L R ELE+EG L EA+RL +R++YDLEM++ G Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLADRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR PGE P L +Y P+D LL +DESHV+IPQI MY GD RK TL Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDKARKTTL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ +DNRPL FEE+ L I VSATP +EL +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPAALDNRPLEFEEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+EIR QV+D+ +EI + ++ R L+T LTKRMAE+L++YL I+ Y+HS+V Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI+I+ LR G +DVLVG+NLLREGLD PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ VI YAD+IT S+Q IDET RRR KQ+ +N+ HNI P V K + Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEAHNITPTQVVSKRTNALSQ-- 600 Query: 738 LEDAATTNISIDAQQLS-------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 E TT S A+ L++ K ++ +RKQM+ AA LNF EAA Sbjct: 601 -EGYVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPDLIEQVRKQMYAAAKELNFVEAA 659 Query: 785 RIRDEIKRLKS 795 R+RDE+ L+S Sbjct: 660 RLRDEMYALQS 670 >gi|254411502|ref|ZP_05025279.1| excinuclease ABC, B subunit [Microcoleus chthonoplastes PCC 7420] gi|196182003|gb|EDX76990.1| excinuclease ABC, B subunit [Microcoleus chthonoplastes PCC 7420] Length = 665 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/659 (52%), Positives = 452/659 (68%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + GDQP AI++L + + + Q LLG TG+GKT+T+AKVIE +P +V+A Sbjct: 4 FDLQAPFEAKGDQPQAISRLTTSLQAGNRFQTLLGATGTGKTYTVAKVIEQTGKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E ++FFP NAVEYFVSYYDYYQPEAY+P +DTYIEK ++IN++ID +RH Sbjct: 64 HNKTLAAQLCNELRDFFPQNAVEYFVSYYDYYQPEAYIPVSDTYIEKSAAINDEIDMLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + + L++G ++Q++LL L QY R Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPLRVGTELDQRQLLRDLASVQYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI + RG FRV GD +EI P++ ED RV FG++I+ I P+TG ++++ + IY Sbjct: 184 DIEMGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYVDPVTGGILQSLNALNIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A + I+ EL ++ +L++ G+LLEAQRL+QR YDLE+L G C Sbjct: 243 PARHFVTPDDRLEEACEAIEAELHQQIAQLQEAGKLLEAQRLDQRTRYDLELLREVGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR GEPP L +Y P+D LL VDESHVT+PQI GMY GD RK L ++ Sbjct: 303 GVENYSRHLAGRMAGEPPECLIDYFPQDWLLVVDESHVTVPQIRGMYNGDQARKRVLIDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRL S DNRPL+ EE+ I VSATPG WE+EQ Q +VEQ+IRPTG+VDP + Sbjct: 363 GFRLLSAADNRPLKAEEFWTKVNQCIFVSATPGDWEIEQSQEQVVEQVIRPTGVVDPEIF 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ EI A + R+L+T LTKRMAEDLTEYL ER IRVRY+HSE+ ++E Sbjct: 423 VRPTEGQVDDLLAEIQERASKKERVLVTTLTKRMAEDLTEYLQERGIRVRYLHSEINSIE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI++ LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SLIQTIGRAAR Sbjct: 483 RIEILQSLREGAFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAARSLIQTIGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737 +V + ILYAD +T S+ AIDET RRR QL +N+ H I PQ + +K I L Sbjct: 543 HVRGQAILYADNLTDSMAKAIDETERRRGIQLAYNRMHGITPQPIVKKSSNAILAFLDVS 602 Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L + A+ L L + + L QM AA NL FE+AA+ RD+IK L+ Sbjct: 603 RRLNHQQLATVYEQAEDLPLEQI--PEVISQLETQMKEAAKNLEFEQAAQYRDKIKHLR 659 >gi|270307809|ref|YP_003329867.1| excinuclease ABC, B subunit [Dehalococcoides sp. VS] gi|270153701|gb|ACZ61539.1| excinuclease ABC, B subunit [Dehalococcoides sp. VS] Length = 668 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/657 (51%), Positives = 465/657 (70%), Gaps = 6/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ +GDQP A+ +L +G+ Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 4 FKIVSDFALTGDQPQAVEKLSEGLAHGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK++ INE+ID++RH Sbjct: 64 HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +ATR+L ER D ++V+SVSCIYG+G E Y ++ LK G S+ + LL LV QY+R Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLLLRRLVDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FR+ GD++EI P++ E++A RV FG++IE I P++G+ + +++ I IY Sbjct: 184 DIDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIDEINIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + A+K I+ EL+ RL ELE EG++LE RL+QR YDLEM++ G C Sbjct: 243 PAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEGKMLETARLKQRTNYDLEMMQQAGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G P TL +Y PED LL VDESH+++PQI GMY GD RK TL +Y Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL F+E+ +I VSATPG +E E Q +VEQ++RPTGL++P + Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQSIYVSATPGPYEKEHSQQ-VVEQLVRPTGLLEPVIT 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +E+ + R+L+T LTK+M+E L +YL E I+ Y+HSEV TLE Sbjct: 422 VKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVDTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG +DV+VGINLLREGLD+PE LVAILDADKEG+LRS+ +LIQT+GRAAR Sbjct: 482 RVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +V+ +VI+YAD IT S+Q A+DE +RRR+ Q ++N+ HNI PQ +++ I ++ + I Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + T +S + + + ++ L K L QM AA NL FE AA IRD + L+++ Sbjct: 599 SVTAEVSGPEFRPAPTLREDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655 >gi|157736872|ref|YP_001489555.1| excinuclease ABC subunit B [Arcobacter butzleri RM4018] gi|157698726|gb|ABV66886.1| excinuclease ABC, subunit B [Arcobacter butzleri RM4018] Length = 657 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/657 (53%), Positives = 464/657 (70%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AI L I + + LLGVTGSGKT+T+AKVIE +Q+P ++M Sbjct: 4 FKVVSDYEPSGDQPKAIEALSSSIKAGNQYNTLLGVTGSGKTYTIAKVIEKVQKPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN++++R+R Sbjct: 64 HNKTLAAQLYSEFKQFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IV++SVS YG+G+ Y M+ ++++G + QKE L L++ YKR Sbjct: 124 SATASLLSFDDVIVIASVSANYGLGNPSEYKAMVQRVEVGFNYSQKEFLLKLIEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+IFP++ ED RV FG+++E I++ +T K +++ + IY Sbjct: 184 DKFFDRADFRVNGDVIDIFPAYFEDEFIRVEFFGDEVESITKHEYITNTKTKDLNEVIIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + +V + L A+K I+EEL+ RL +KE +L+E QRL+QR+ +DLEM+E TG C+ Sbjct: 244 SVNPFVVTQENLGRAVKEIEEELERRLDFFQKEQKLVEYQRLKQRVEFDLEMIEGTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ GE P +L FE + ED LL VDESHV++PQ GM+ D RK L Sbjct: 304 GIENYARHLTGQKAGETPYSLLDYFEQMDEDFLLVVDESHVSLPQFRGMHAADRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+F+E+ P + VSATP ELE ++ EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFDEFINKAPHYVFVSATPNELELEMS-SVVAEQIIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++I + QVE ++DEI + R+L+TVLTK+MAE+L Y + I+V+YMHSE+ Sbjct: 423 IIDIIDSEFQVEKLHDEIKKVIAKNERVLVTVLTKKMAEELASYYADLGIKVKYMHSEID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR+LRLG FDVL+GINLLREGLDIPE LVAILDADKEGFLRSKTSLIQTIGR Sbjct: 483 AIERNQIIRELRLGTFDVLIGINLLREGLDIPETSLVAILDADKEGFLRSKTSLIQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N +VIL+A IT S+Q AIDET RRR+ Q E NK+HNI P+S K K+ E + Sbjct: 543 AARNENGRVILFAKRITASMQFAIDETNRRRKLQEEFNKEHNITPKSTKRKLDENLKLEE 602 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D A ++ S KK L L KQM AA +LNFEEA R+RDEI ++K Sbjct: 603 YDDVAWKKQKLEKMPASERKK----ILIELNKQMKKAASDLNFEEAIRLRDEIAKIK 655 >gi|313887287|ref|ZP_07820978.1| excinuclease ABC, B subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923206|gb|EFR34024.1| excinuclease ABC, B subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 677 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/671 (51%), Positives = 460/671 (68%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ ++RP +V++ Sbjct: 3 FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVERPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+ TDTYIEK+ +IN ++D++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVV+SVSCIYG+ + + I++L++G +E+ L+ L + Y Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G+FRV GD+I+IFP+ E VA+R+ ++ ++I+ I+ P++ + ++++ Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDDEIDRITIIDPVSAESQGTLDSL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +IY + +VT A+ IK++L R ELE+EG L EA+RL +R++YDLEM++ G Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR PGE P L +Y P+D LL +DESHV+IPQI MY GD RK TL Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDKARKTTL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ +DNRPL FEE+ L I VSATP +EL +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPAALDNRPLEFEEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+EIR QV+D+ +EI + ++ R L+T LTKRMAE+L++YL I+ Y+HS+V Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI+I+ LR G +DVLVG+NLLREGLD PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ VI YAD+IT S+Q IDET RRR KQ+ +N+ HNI P V K + Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEAHNITPTQVVSKRTNALSQ-- 600 Query: 738 LEDAATTNISIDAQ-----QLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 E TT S A+ Q++ L++ K ++ +RKQM+ AA LNF EAA Sbjct: 601 -EGYVTTKSSAQAEAYVEDQIAVASPVAEYLTQDKLPDLIEQVRKQMYAAAKELNFVEAA 659 Query: 785 RIRDEIKRLKS 795 R+RDE+ L+S Sbjct: 660 RLRDEMYALQS 670 >gi|261367038|ref|ZP_05979921.1| excinuclease ABC subunit B [Subdoligranulum variabile DSM 15176] gi|282571156|gb|EFB76691.1| excinuclease ABC subunit B [Subdoligranulum variabile DSM 15176] Length = 679 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/654 (51%), Positives = 455/654 (69%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ + P+GDQP AI L++GI + Q LLGVTGSGKTFTMA +I RP +++ Sbjct: 5 FHLKAPFQPTGDQPQAIEALVQGIEEGDDAQTLLGVTGSGKTFTMANIIARCNRPTLILE 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LA+Q+ +E ++FFP +AVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH Sbjct: 65 PNKTLASQICTEMRSFFPDDAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L E+ + I+V+SVSCIY +G Y M++ L+ G +E+ EL + LVK QY+R Sbjct: 125 SATAALSEQRNVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCNRLVKLQYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ IR FRV GD+++I ++ ++ A RV FG++I+ I EF PLTGQ V + I+ Sbjct: 185 DMNFIRNKFRVKGDTVDIHLAYNDEYAIRVEFFGDEIDRIIEFDPLTGQHKNVVRHVAIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY+ + + I E++ ++ + +EG+LLEAQR++QR YD+EML+ G C+ Sbjct: 245 PASHYIVGPEKMKEGLAKIALEMEEQVKKFTEEGKLLEAQRIQQRTNYDMEMLQEVGMCK 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR PG P TL +Y P+D LL VDESHV +PQI GMY GD+ RK TL EY Sbjct: 305 GIENYSAVLSGRAPGSTPTTLLDYFPDDFLLMVDESHVMLPQIRGMYGGDYSRKKTLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ I VSATPG +E Q + EQ+IRPTGL+DP + Sbjct: 365 GFRLPSAFDNRPLRFEEFEKKVHQKIFVSATPGEYE-RQHSSRVAEQVIRPTGLLDPLIM 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q+ED+ EI +G R L+T LT +MAEDLT+YL E ++ +YMH EV T E Sbjct: 424 VRPVEGQIEDLLGEIRQRIDRGERALVTTLTVKMAEDLTDYLEEHGVKTKYMHHEVDTFE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+DLR+G DV+VGINLLREGLD+PE L+AILDADKEGFLRS+TSLIQTIGRAAR Sbjct: 484 RMEIIKDLRVGAIDVIVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N V++YAD +T S++ AI ET RRR Q +N++H I P+++ + I + ++ + E+ Sbjct: 544 NANGVVLMYADEVTPSMERAIMETERRRAIQDAYNQEHGITPKTIVKAIGDGLEISMSEE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +Q +S+ + + ++ + K+M AA L FE AA++RDEI RL+ Sbjct: 604 NKRM------RQHRMSRAERQQTIERMTKEMKEAARLLQFELAAQLRDEIARLE 651 >gi|154487489|ref|ZP_02028896.1| hypothetical protein BIFADO_01344 [Bifidobacterium adolescentis L2-32] gi|154084007|gb|EDN83052.1| hypothetical protein BIFADO_01344 [Bifidobacterium adolescentis L2-32] Length = 703 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/685 (51%), Positives = 468/685 (68%), Gaps = 35/685 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDDLLRKFVDMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESQVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I++EL R EL K+G+ LEAQRL R TYDLEML G+C Sbjct: 251 PASHYVAGPERMERALKTIQQELDERTAELHKQGKELEAQRLTMRTTYDLEMLSQVGTCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD R+ TL E+ Sbjct: 311 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRERTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ V++YAD IT++++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVVMYADDITEAMRKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769 T + + K G +HL + L + Sbjct: 610 VDTQTLL--GTGYRNADKAGNSHLGVPHTSKEESGRRHEEILKAGLPAQDLADLIRQLSE 667 Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794 QMH AA+ L FE AAR+RDEI+ LK Sbjct: 668 QMHTAAEQLQFELAARLRDEIRDLK 692 >gi|320332650|ref|YP_004169361.1| UvrABC system protein B [Deinococcus maricopensis DSM 21211] gi|319753939|gb|ADV65696.1| UvrABC system protein B [Deinococcus maricopensis DSM 21211] Length = 671 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/656 (51%), Positives = 457/656 (69%), Gaps = 8/656 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 ++Q+++ PSGDQP AI L+ G+ S + Q LLG TG+GKT++MAKVIE RPA++M Sbjct: 1 MLRVQSEFTPSGDQPTAIRSLVDGLESGLRYQTLLGATGTGKTYSMAKVIEETGRPALIM 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNKIL AQL SEF+ FFP AVE+FVSYYDYYQPEAYVP D +I+K+++IN++++R+R Sbjct: 61 APNKILTAQLASEFREFFPGAAVEFFVSYYDYYQPEAYVPGKDLFIDKDANINQELERLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HS TRSLL R D IVV+SVSCIYG+G E Y + + LK+G + + +L LV+ QY R Sbjct: 121 HSTTRSLLTRRDTIVVASVSCIYGLGDPEEYRALNLVLKVGQPIGRDAILDRLVELQYDR 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + G FR GD IEI+PS+ E R+ ++G+D++ I ++P++G ++ + Sbjct: 181 NDIELAPGRFRAKGDVIEIWPSYDEQ-PLRLELWGDDLDRIVLYHPVSGDVQAELDATVV 239 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y HYV+ + A+ I++EL R+ + G+LLEAQR+++R YDLEML+ G C Sbjct: 240 YPAKHYVSSAGNIERAIVTIQQELDERVEYFKASGKLLEAQRIKERTLYDLEMLKVLGYC 299 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ GR PGE P T+ +Y D + FVDESHVTIPQ+ GM GD RK TL + Sbjct: 300 SGIENYSRHIDGRKPGETPYTMLDYFASDFVTFVDESHVTIPQVGGMSNGDRARKQTLVD 359 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS MDNRPL F E+ T+ VSATPG +E E I +QIIRPTGLVDP V Sbjct: 360 YGFRLPSAMDNRPLNFGEFLGKIGQTVFVSATPGPFEREHSDSI-ADQIIRPTGLVDPVV 418 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + QVED+ + A +G R L+T LTKRMAEDL EYL ++ +R RYMHS++ T+ Sbjct: 419 QLRPIKGQVEDILGRVRERAAKGERTLVTTLTKRMAEDLAEYLLDKGVRARYMHSDIDTV 478 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER IIRDLRLG +DVL+GINLLREGLD+PE LVAILDADK GFLRS+ SLIQTIGRAA Sbjct: 479 ERQVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAILDADKPGFLRSERSLIQTIGRAA 538 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN +VILY D+IT ++Q A++ET RRREKQL +N +H I P ++++ + +VI E Sbjct: 539 RNVNGEVILYGDSITPAMQAAMEETARRREKQLAYNAEHGITPTTIRKGVRDVIRG---E 595 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + A S D L + L L M A+++L+FE+AA +RD+I+ +++ Sbjct: 596 EEAELPQSPD---LGNDRDALMTQLTDLELDMWRASEDLDFEKAASLRDQIRAIEA 648 >gi|159901478|ref|YP_001547725.1| excinuclease ABC subunit B [Herpetosiphon aurantiacus ATCC 23779] gi|238687090|sp|A9B464|UVRB_HERA2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|159894517|gb|ABX07597.1| excinuclease ABC, B subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 698 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/656 (50%), Positives = 465/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ Y P GDQP AIAQL+ G++S Q LLG TG+GKT T+A+VIE +QRP +VMA Sbjct: 4 LKVHAPYEPRGDQPQAIAQLVNGLNSGLVHQTLLGATGTGKTHTIARVIEQVQRPTLVMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP NAV YFVSYYD Y PEAYVP D YIEKE+ INE+IDR+RH Sbjct: 64 HNKTLAAQLYAEFKEFFPENAVGYFVSYYDAYTPEAYVPSKDLYIEKEAQINEEIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT++L R+D I+V+SVS IYG+GS Y Q+ ++LK G+ + ++L +L+ Q++R Sbjct: 124 EATQALFTRSDVIIVASVSAIYGLGSPTDYGQVALKLKTGEIRNRDKVLRTLIDLQFERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD++EIFP++ E A+R+ M+G++IE + E PLTG+ + + I+++ Sbjct: 184 DLDFHRGTFRVRGDTLEIFPANAES-AFRIEMWGDEIERMVEVDPLTGEILTQKDHIEVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++ + A+ I+ EL+ +L LE EG++LEA RL+QR YDLE++E G C Sbjct: 243 PAKHFIPNADKMQAAIGDIRLELEQQLAHLEGEGKVLEAARLKQRTLYDLEIMEELGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R+ G+ P TL +Y P+D LL +DESH+++PQI GM+ GD RK TL ++ Sbjct: 303 GIENYSRHMDRRSEGQTPWTLLDYFPDDFLLVIDESHISVPQIRGMFNGDRSRKQTLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E++ I VSATPG +E + + +VEQIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLMFDEFSKHVHQAIYVSATPGVYEYQHHEQ-VVEQIIRPTGLLDPMVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q++D+ EI G R+L+T LTKRMAEDLT+YL E +R +Y+HS+V T+E Sbjct: 422 VRRTRGQIDDLLGEIKRRVDTGSRVLVTTLTKRMAEDLTDYLKEMGVRTQYLHSDVDTIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+I+RDLRLG FDVLVGINLLREGLD+PE LVAILDADK GFLRS++SL+Q IGRAAR Sbjct: 482 RIDILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKAGFLRSESSLVQIIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 +++ V++YADTIT ++ AI ET RRR+ Q +N++H I P+ + + + ++ + + Sbjct: 542 HIDGTVLMYADTITPAMDYAISETRRRRQIQERYNQQHGIEPKGIVKAVRDLTEGMKKVA 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A S++K++ + +L KQM AA +L FE+AA +RD++ ++ + Sbjct: 602 EKPAAYQTAANPDSMTKEELFKVINALEKQMKQAAKDLEFEKAALLRDQLTEMRQT 657 >gi|183601487|ref|ZP_02962857.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis HN019] gi|219683971|ref|YP_002470354.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis AD011] gi|241191013|ref|YP_002968407.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196419|ref|YP_002969974.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219093|gb|EDT89734.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis HN019] gi|219621621|gb|ACL29778.1| excinuclease ABC, B subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240249405|gb|ACS46345.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250973|gb|ACS47912.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794002|gb|ADG33537.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis V9] Length = 703 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/690 (51%), Positives = 467/690 (67%), Gaps = 45/690 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L GD +++ +LL + V QYKR Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIDRDDLLRTFVDMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I V + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIEQVSDVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL R+ EL K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMAKALDSIQRELDERVAELRKQGKELEAQRLSMRTTYDLEMLSQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGL+DP +E Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPKIE 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI G R L+T +TK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVEGQIDDLLAEIKDRVAAGERTLVTTMTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+ AI+ET RRRE Q+ +N++H+I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADEMTDSMSKAIEETNRRREIQMAYNEEHHIDPKPLIKKISDVNDMLAKED 609 Query: 741 AATTNISIDAQQL-----SLSKKKGKAHL------------------------------- 764 +D Q+L S K G +HL Sbjct: 610 -------VDTQELLEGGYRNSGKAGNSHLGLPNTTPEEADRRHEEILKAGLPAQDLADLI 662 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L QMH AA+ L FE AAR+RDEI+ LK Sbjct: 663 RQLSDQMHTAAEQLQFELAARLRDEIRDLK 692 >gi|307720472|ref|YP_003891612.1| Excinuclease ABC subunit B [Sulfurimonas autotrophica DSM 16294] gi|306978565|gb|ADN08600.1| Excinuclease ABC subunit B [Sulfurimonas autotrophica DSM 16294] Length = 660 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/657 (52%), Positives = 457/657 (69%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L I + Q L GVTGSGKT TMA+VIE ++ P I+M Sbjct: 7 FEVVSPYQPAGDQPKAIELLTDSILKGNRYQTLEGVTGSGKTHTMARVIENVKMPTIIMT 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP+N VEYFVSYYDYYQPEAY+PR D +IEK+S+IN++++R+R Sbjct: 67 HNKTLAAQLYSEFRQFFPNNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERLRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL +D IV++SVS YG+G E Y M+ L +GD + QK+LL LV+ Y R Sbjct: 127 SATANLLSYDDVIVIASVSANYGLGDPEEYQNMVQSLAVGDEIAQKKLLLRLVEMGYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RV G+SI+I+P + E A RV FG++IE I F + +K+ +++ IY Sbjct: 187 DTYFDSGHIRVNGESIDIYPPYFEQEAIRVEFFGDEIEAIYTFDVIDNKKLEEHKSVTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S + + ++ A+K I+EEL RL +KEG+LLE QRL+QR+ +DLEML+TTG C+ Sbjct: 247 ATSQFSVSQEKMSVAIKRIEEELDERLAYFQKEGKLLEYQRLKQRVEFDLEMLQTTGMCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR LT + PGE P TL +Y ++ L+ VDESHV++PQ GMY GD RK L Sbjct: 307 GIENYSRLLTNKKPGEAPFTLLDYFEQNHKEYLVIVDESHVSLPQYRGMYAGDRARKEVL 366 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL+ +E+ P + VSATP +ELE EQIIRPTGL+DP Sbjct: 367 VDYGFRLPSALDNRPLKADEYINKAPHYLFVSATPAEYELEMSVA-KAEQIIRPTGLLDP 425 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI+ + QVED++DEI + R+L+TVLTK+MAE LT+YL + I+V+YMHS++ Sbjct: 426 VIEIKPSDNQVEDIHDEIKKTVVKDERVLITVLTKKMAEALTKYLADLGIKVQYMHSDID 485 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ER +IIR LRLG+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+T+L+QTIGR Sbjct: 486 TIERNQIIRSLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETALVQTIGR 545 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 ARN N +VILYA+ +T S+Q AID+TT RRE Q +NK+H I P++ K + E + Sbjct: 546 GARNENGRVILYANKMTGSMQRAIDKTTARREIQEAYNKEHGITPKTTKRTLDENLK--- 602 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 LED Q + + KA +K L +M AA LNFEEAAR+RDEI ++K Sbjct: 603 LEDHGDIYQKYKKQD-KIPPSERKAMVKELSLKMKQAAKELNFEEAARLRDEITKIK 658 >gi|308186115|ref|YP_003930246.1| UvrABC system protein B [Pantoea vagans C9-1] gi|308056625|gb|ADO08797.1| UvrABC system protein B [Pantoea vagans C9-1] Length = 613 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/607 (56%), Positives = 435/607 (71%), Gaps = 8/607 (1%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+APNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I+ Sbjct: 1 MVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 60 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 +MR SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + Q Sbjct: 61 QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ 120 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y R D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V Sbjct: 121 YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPR 180 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 IY +HYVTPR + AM+ IK EL R L + +LLE QR+ QR +DLEM+ Sbjct: 181 FTIYPKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSEL 240 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD RK T Sbjct: 241 GYCSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKET 300 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L EYGFRLPS +DNRP++FEE+ L P TI VSATPG +ELE+ +V+Q++RPTGL+D Sbjct: 301 LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLD 360 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +E+R TQV+D+ EI+ R+L+TVLTKRMAEDLTEYL E +VRY+HS++ Sbjct: 361 PIIEVRPVGTQVDDLLSEIHQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDI 420 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIG Sbjct: 421 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 480 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--- 733 RAARN+N K ILY D IT S+ AI+ET RRREKQ HN+K+ I PQ + +KI +++ Sbjct: 481 RAARNINGKAILYGDKITPSMARAIEETERRREKQQLHNEKNGIVPQGLNKKITDILELG 540 Query: 734 -DPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + + A +AQ L+ L+ + + + L QM A NL FE+AA +RD Sbjct: 541 KNVVKTRGKAKPARPGEAQALADFQLLTPQALQKKIHELEGQMQQHAQNLEFEQAASVRD 600 Query: 789 EIKRLKS 795 ++ L++ Sbjct: 601 QLHELRT 607 >gi|257463628|ref|ZP_05628019.1| excinuclease ABC subunit B [Fusobacterium sp. D12] gi|317061180|ref|ZP_07925665.1| excinuclease ABC subunit B [Fusobacterium sp. D12] gi|313686856|gb|EFS23691.1| excinuclease ABC subunit B [Fusobacterium sp. D12] Length = 660 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/658 (51%), Positives = 476/658 (72%), Gaps = 7/658 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ Y P+GDQP AI +L++ + + + Q+LLGVTGSGKTFT+A VIE +QRP +++ Sbjct: 1 MFRLCAKYQPTGDQPIAIEKLVESLEKKNRDQVLLGVTGSGKTFTIANVIERVQRPTLII 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLY E+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+S++NE+ID++R Sbjct: 61 APNKTLAAQLYQEYKAFFPDNAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + + + + +L+ L+ +Y+R Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGILRAKLIERLIALRYER 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378 D+ IRG+FRV GD I+++PS+LE +R+ +G+D+E ISE + LTG+KI+ N+E I Sbjct: 181 NDMNFIRGSFRVKGDVIDVYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IYA + Y+T L + I+E+ + E +K G+LLEAQRL+QR+ YD+EM++ G Sbjct: 240 IYAATQYITEEEDLERIISEIREDQTREVKEFQKVGKLLEAQRLQQRVDYDIEMIKEIGY 299 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD RK L Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTALV 359 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRL + +DNRPL+FEE+ TI VSATPG +E++Q IVEQ+IRPTG++DP Sbjct: 360 ENGFRLKAALDNRPLQFEEFRERTGQTIYVSATPGDYEIKQAGSAIVEQLIRPTGILDPL 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+RS + QV+D+ +EI+ + R+L+T LTK+MAE+LTEY E ++VRYMHS+V T Sbjct: 420 IEVRSTKGQVDDLLEEIHKRMLKKQRVLVTTLTKKMAEELTEYYEELGVKVRYMHSDVDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+RIEII+ LR G+ DVLVGINLLREGLDIPE LVAIL+ADKEGFLRS+ SLIQTIGRA Sbjct: 480 LDRIEIIKALRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ KVILY D +T S+ +A++ET RRR Q +N H + P+S+ + E+ + I+ Sbjct: 540 ARNIEGKVILYGDVMTDSMTMAMEETERRRGIQENYNLLHGLEPESI---VKEIAEEIIQ 596 Query: 739 EDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D + S +++ SK++ + + K++ + L+FE+A +R+E+KRL+ Sbjct: 597 LDYGISKEAFSQKSKKKFHSKEEIEKEIAKCHKKIVKLSKELDFEQAILVREEMKRLQ 654 >gi|224282842|ref|ZP_03646164.1| excinuclease ABC subunit B [Bifidobacterium bifidum NCIMB 41171] gi|313140001|ref|ZP_07802194.1| UvrABC system protein B [Bifidobacterium bifidum NCIMB 41171] gi|313132511|gb|EFR50128.1| UvrABC system protein B [Bifidobacterium bifidum NCIMB 41171] Length = 703 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/683 (51%), Positives = 471/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKFVGMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + ++ I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIDHETSVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K IKEEL R+ EL+K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ R PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDL +YL ER I+V Y+HS+V TL Sbjct: 430 VRPTKGQIDDLLAEIKDRVDKNERTLVTTLTKKMAEDLADYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + + K+ + LK+ L +QM Sbjct: 610 VDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|20092137|ref|NP_618212.1| excinuclease ABC subunit B [Methanosarcina acetivorans C2A] gi|22257070|sp|Q8TKS3|UVRB_METAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|19917359|gb|AAM06692.1| excinuclease ABC, subunit B [Methanosarcina acetivorans C2A] Length = 670 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/700 (49%), Positives = 470/700 (67%), Gaps = 40/700 (5%) Query: 99 MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 M S Q L + LL + + W D F++ + + P G QP AI Sbjct: 1 MKVSSQTPGELSKKKFELLHDARYW-------------DSPQFKLISGFEPKGSQPQAIE 47 Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +L++G+ RE+ Q LLGVTGSGKT+T+A VI +++P +V+A NK LAAQLY+EF+ FFP Sbjct: 48 KLVEGLKKREQFQTLLGVTGSGKTYTVANVINQIRKPTLVIAHNKTLAAQLYNEFREFFP 107 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 N VEYFVSYYDYYQPE+Y+P D YIEK++ IN +I++MR +AT SL+ R D IVV+SV Sbjct: 108 ENRVEYFVSYYDYYQPESYLPAKDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASV 167 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 SCIYG+G+ E++ +M +LK+GD V++KE+L L+ Q++R D+ ++ G FRV GD+I+I Sbjct: 168 SCIYGLGNPENFQKMGFELKVGDKVQRKEILEKLIDIQFERNDMELMPGRFRVKGDTIDI 227 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 P + +D+ RV +FG++++ ISE TGQ+ +++ +Y HYV P +A++ Sbjct: 228 IPGYFDDII-RVELFGDEVDRISEVDKQTGQRKEDMDYFFVYPARHYVIPEEEQKSAIRS 286 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I EEL+ L L LLE+ RL+QR YD+EM+E TGSC+ IENYSR+ R PGE P Sbjct: 287 ILEELEEHLPTL----GLLESHRLKQRTLYDMEMIEETGSCKGIENYSRHFDHRQPGEQP 342 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 L +Y PED LL +DESH TIPQ+ GMY GD RK +L +YGFRLPS DNRPL+FEE+ Sbjct: 343 FCLLDYFPEDFLLIIDESHQTIPQLHGMYNGDRSRKKSLVDYGFRLPSAYDNRPLKFEEF 402 Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 I VSATP +E E IVEQIIRPTGLVDP VE+R QV DV EI Sbjct: 403 EKYMENVIFVSATPSDYEREHS-ARIVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKI 461 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +G R L+T LTK++AE+LTE+L I+ RY+HS++KT+ER EIIR+LRLGKFDVLVG Sbjct: 462 VDRGDRALVTTLTKKLAEELTEFLARNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVG 521 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLDIPE G + ILDADKEGFLR SLIQ IGRAARN +SKV+LYAD +T+SI+ Sbjct: 522 INLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAARNSSSKVVLYADNMTESIK 581 Query: 699 LAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPILLEDAATTNISIDAQQLS 754 A+DET RRR Q+ +N++H I P++ ++EK++++ D + N+ I+ Sbjct: 582 KAVDETERRRSMQIAYNEEHGIVPKTIRKPIREKVVDITDTKHIPKTDIPNVIIE----- 636 Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L +M AAD L+FE A ++R+ IK+L+ Sbjct: 637 ------------LDAEMREAADRLDFERAIQLRELIKKLE 664 >gi|289178755|gb|ADC86001.1| Excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis BB-12] Length = 712 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/690 (51%), Positives = 467/690 (67%), Gaps = 45/690 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 21 FVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 80 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 81 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 140 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L GD +++ +LL + V QYKR Sbjct: 141 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIDRDDLLRTFVDMQYKRN 200 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I V + I+ Sbjct: 201 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIEQVSDVHIF 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL R+ EL K+G+ LEAQRL R TYDLEML G C Sbjct: 260 PASHYVAGPERMAKALDSIQRELDERVAELRKQGKELEAQRLSMRTTYDLEMLSQVGVCS 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 320 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGL+DP +E Sbjct: 380 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPKIE 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI G R L+T +TK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 439 VRPVEGQIDDLLAEIKDRVAAGERTLVTTMTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 499 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD +T S+ AI+ET RRRE Q+ +N++H+I+P+ + +KI +V D + ED Sbjct: 559 NVSGTVIMYADEMTDSMSKAIEETNRRREIQMAYNEEHHIDPKPLIKKISDVNDMLAKED 618 Query: 741 AATTNISIDAQQL-----SLSKKKGKAHL------------------------------- 764 +D Q+L S K G +HL Sbjct: 619 -------VDTQELLEGGYRNSGKAGNSHLGLPNTTPEEADRRHEEILKAGLPAQDLADLI 671 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L QMH AA+ L FE AAR+RDEI+ LK Sbjct: 672 RQLSDQMHTAAEQLQFELAARLRDEIRDLK 701 >gi|146299926|ref|YP_001194517.1| excinuclease ABC subunit B [Flavobacterium johnsoniae UW101] gi|146154344|gb|ABQ05198.1| excinuclease ABC, B subunit [Flavobacterium johnsoniae UW101] Length = 663 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/658 (52%), Positives = 462/658 (70%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P GDQP AI +L +G+ EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A Sbjct: 3 FQVTSDYSPKGDQPQAIQKLAQGVVDGEKYQTLLGVTGSGKTFTVANVIQEVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P T +IEK+ SINE++++MR Sbjct: 63 HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +VV+SVSC+YGIG+ + + ++++ + + +LL SLV+ Y R Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPVEFKKNVIEITRDQVISRTKLLHSLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + GTFR+ GD++EI+PS+ +D A+RV FG++IEEI F T Q I + + I Sbjct: 183 TEADFNPGTFRIKGDTVEIYPSYADD-AYRVHFFGDEIEEIESFDAKTSQVIEKFKRLTI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPEVLQGAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR G P L +Y P D L+ VDESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRQAGTRPFCLLDYFPSDYLMVVDESHVTVSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++ GI VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSDGIYVEQIIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + + R+L+T LTKRMAE+L +YL + +IR RY+HSEV TL Sbjct: 422 EVRPSLNQIDDLIEEIQVRCELDERVLVTTLTKRMAEELAKYLTKVSIRCRYIHSEVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SL QTIGRAA Sbjct: 482 ERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNHRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPIL 737 RN+N K I+YAD IT S+Q IDET RR KQ+ N ++NI PQ++ +KI +P++ Sbjct: 542 RNLNGKAIMYADKITASMQRTIDETNYRRTKQINFNVENNITPQALNKKIDSAFTKNPLV 601 Query: 738 -LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E T + + + LSK + ++ RK M AA L+F +AA++RD+IK+L+ Sbjct: 602 EYELGHTLPAAAEPETAYLSKADLEKLIREKRKSMEKAAKELDFMQAAKLRDDIKKLQ 659 >gi|296453877|ref|YP_003661020.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum JDM301] gi|296183308|gb|ADH00190.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. longum JDM301] Length = 703 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/683 (51%), Positives = 470/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AIA+L + I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK G + + +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQINRDDLLRRFVAMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHEPQVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+EEL RL EL K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +E+ G +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|86133729|ref|ZP_01052311.1| excinuclease ABC, B subunit [Polaribacter sp. MED152] gi|85820592|gb|EAQ41739.1| excinuclease ABC, B subunit [Polaribacter sp. MED152] Length = 662 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/658 (51%), Positives = 458/658 (69%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ P+GDQP AI QL +G+ EK Q LLGVTGSGKTFT+A V++ +++P +++A Sbjct: 3 FKIKSEFSPTGDQPEAIKQLSEGVKQNEKFQTLLGVTGSGKTFTIANVVKEVKKPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+R+R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVSGTYIEKDLSINEDIERLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +VV+SVSC+YGIG+ + + ++ +++G + + L LV Y R Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPTEFKKNVIPVRVGQQISRTTFLHQLVTSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I I G F+V GD + I+PS+ D +RV FG++IEEI F I E + I Sbjct: 183 TEIEIKSGKFKVKGDVVTIYPSY-GDNGYRVHFFGDEIEEIEAFDLENNTVIEKFEHLTI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+E++ ++ ++ G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANLFVTSPDVLQDAIHQIQEDMVKQVNYFKEIGKPLEAKRLEERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+PQ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVPQTHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+F+E+ ++ TI VSATP +EL++ +G+ VEQIIRPTGL+DPP+ Sbjct: 362 YGFRLPAAMDNRPLKFDEFEAIQNQTIFVSATPADYELQKSEGVFVEQIIRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LT+YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLTRVDIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNKSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN I+YAD IT S+Q IDET RRRE Q+ +N KHN P + +KI + + + Sbjct: 542 RNVNGLAIMYADKITDSMQKTIDETERRREIQIAYNTKHNRVPTQINKKIEDTLTKSAVS 601 Query: 740 DAATTNISIDA--QQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 N A Q+L L K++ + ++ RKQM AA +L+F AA++RDEI LK Sbjct: 602 SFHYDNAITKAAEQELQYLPKEEIQDRIRKKRKQMEAAAKSLDFIVAAQLRDEIAVLK 659 >gi|225619311|ref|YP_002720537.1| excinuclease ABC subunit B [Brachyspira hyodysenteriae WA1] gi|225214130|gb|ACN82864.1| excinuclease ABC, B subunit [Brachyspira hyodysenteriae WA1] Length = 682 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/667 (50%), Positives = 464/667 (69%), Gaps = 24/667 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ PSGDQ AI L+KG+ + K Q LLGVT SGKTFT+A VIE RP +VM+ Sbjct: 3 FKLESNFKPSGDQVTAIDSLVKGLENNNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP D YI+K++S+N++IDR+R Sbjct: 63 HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++ ++ E++ LV QY+R Sbjct: 123 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYIAIEKDGEYDRDEIIEKLVSIQYERV 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R F+V GD+IEI ++ ++V RV FG+ +E I + P+T QK+ + + IY Sbjct: 183 KDVLERARFKVIGDTIEIMSAYSDEV-IRVEFFGDTVERIIKINPITRQKLAEQDRVVIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT L +K I+EEL + + + EG+L+EA+R+ R YDLEML G C Sbjct: 242 PAKHFVTGGDKLAAGIKLIEEELDEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR G+ P L +Y PED L +DESHV++PQI GM+ GD RK TL +Y Sbjct: 302 GIENYSRPLSGRKEGDRPACLIDYFPEDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ L TI +SATP +EL++ + VEQIIRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPLYFEEFEKLTHDTIYISATPAEYELKKSSQV-VEQIIRPTGLLDPIIE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + Q++ + +EI RI +T LTK+MAEDLT+YL E +R RY+HS+++T+E Sbjct: 421 VYPIDGQIDRILEEIKKTVANNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE L+ ILDADK GFLR+ T+LIQTIGRAAR Sbjct: 481 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI++AD+I+ ++++AI+ET RRR Q+E+NKKHNI P+++ +KI ++I+ E+ Sbjct: 541 NANGRVIMFADSISDAMKVAIEETERRRTIQMEYNKKHNITPKTIIKKIQDIIER---EE 597 Query: 741 AATTN-------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 T+ + ID +Q K ++K L K+M A+D+L FE+A IR Sbjct: 598 KVETSYELHFDFRRFNERVKIDPEQ------KSDDYIKELEKEMKKASDSLEFEKAIEIR 651 Query: 788 DEIKRLK 794 ++I +LK Sbjct: 652 EKINQLK 658 >gi|213692614|ref|YP_002323200.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254764901|sp|B7GSZ2|UVRB_BIFLI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|213524075|gb|ACJ52822.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458765|dbj|BAJ69386.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 703 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/683 (51%), Positives = 470/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK G + + +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQINRDDLLRRFVAMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHEPQVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+EEL RL EL K+G+ LEAQRL+ R TYDLEML G C Sbjct: 251 PASHYVAGPERMERALKTIREELDGRLSELRKQGKELEAQRLDMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+L GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHLDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVKGQIDDLLAEIKARVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D + ED Sbjct: 550 NVSGVVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|289449747|ref|YP_003474942.1| excinuclease ABC subunit B [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184294|gb|ADC90719.1| excinuclease ABC, B subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 743 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/594 (54%), Positives = 424/594 (71%), Gaps = 1/594 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQPAAI L G + + Q LLGVTGSGKTFTMA +I +QRP +V+A Sbjct: 3 FKLHAPFQPTGDQPAAIEALTAGFTAGRRAQTLLGVTGSGKTFTMANIIARLQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L+ QL +EFK FFP NAVEYFVSYYD+YQPEAY+ TDTYIEK+S+IN++IDRMRH Sbjct: 63 PNKTLSGQLCAEFKAFFPENAVEYFVSYYDFYQPEAYIAATDTYIEKDSAINDEIDRMRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLER D IVV+SVSCIYG+G +Y ++V L+ G + + E++ LV QY+R Sbjct: 123 SATASLLERRDVIVVASVSCIYGLGDPYTYKHLMVHLREGATKNRDEVIRELVDIQYQRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GDS++I+P + + R+S F ++I+ I+E LTG+ + + IY Sbjct: 183 DYDCRRGTFRVRGDSLDIYPISSDKIILRISFFDDEIDRIAEVDALTGKTLALRNYVLIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T R + A+ I++EL R+ EL EG+++EA RLEQR YD++ML TG + Sbjct: 243 PASHYATSRAKIMGALSDIEQELTARVKELRAEGKIMEAYRLEQRTRYDMDMLLETGFVK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GR PG PP TL ++ PED LL +DESHVT+PQI MY GD RK L +Y Sbjct: 303 GIENYSRFLDGRKPGVPPYTLLDFFPEDYLLMIDESHVTVPQIGAMYAGDRSRKEALVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL+F E+ T+ VSATPG +E + + + EQ+IRPTGL+DPP+E Sbjct: 363 GFRLPAAFDNRPLKFNEFERKMGQTLFVSATPGKYEAQHSE-FVQEQVIRPTGLLDPPIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I Q+ED+ I G R L+ LTK+M+EDLTE+ ++V+Y+HS++ E Sbjct: 422 IHPVDGQIEDMLAAIKKKTAVGERTLVLTLTKKMSEDLTEFFSSAGLKVKYLHSDIANEE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I+++LR G+FDVLVGINLLREG+D+PE GL+AILDADKEGFLRS TSLIQ IGR AR Sbjct: 482 RLRILKELREGEFDVLVGINLLREGIDLPEVGLLAILDADKEGFLRSATSLIQIIGRVAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 NVN KVI+YAD+IT ++Q A+DET RRR Q +N+ HNI P +V ++I E+ D Sbjct: 542 NVNGKVIMYADSITAAMQNAVDETNRRRRIQATYNQIHNITPHTVVKEIRELPD 595 >gi|254421406|ref|ZP_05035124.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7335] gi|196188895|gb|EDX83859.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7335] Length = 680 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/660 (51%), Positives = 455/660 (68%), Gaps = 9/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P+GDQP AI QL+K + + + Q LLG TG+GKT T+A+ I+ + +P +V+A Sbjct: 5 FNIQAPFEPAGDQPQAIKQLVKNLKANREYQTLLGATGTGKTHTIARTIDQVGKPTLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL +E + FFP N+VEYF+SYYDYYQPEAY+P TDTYI+K SSIN++ID +RH Sbjct: 65 HNKTLAAQLCNELREFFPDNSVEYFISYYDYYQPEAYIPVTDTYIQKTSSINDEIDMLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSL ER D IVV+S+SCIYG+G Y + L++G Q+++L L QY R Sbjct: 125 SATRSLFERKDVIVVASISCIYGLGIPSEYLNASIPLRVGAETNQRQVLRDLASVQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG +++++ + IY Sbjct: 185 DLEMGRGRFRVKGDVLEIGPAY-EDRVIRVEFFGDEIDAIRYIDPVTGATLQSMDALNIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VTP L A K I+ ELK +L LE +G+LLEAQRLEQR YDLEMLE G C Sbjct: 244 PARHFVTPDDKLEAACKGIRAELKEQLEFLESQGKLLEAQRLEQRTRYDLEMLEEVGYCN 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENY+R+L GR PG PP L +Y P D LL VDESHVT+PQI MY GD RK L E Sbjct: 304 GVENYTRHLAGRLPGAPPECLLDYFPHDDWLLAVDESHVTVPQIRAMYNGDQARKRVLIE 363 Query: 500 YGFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPS DNRPL+ EE W+ + I VSATPG WE+ +G +V+QIIRPTG++DP Sbjct: 364 HGFRLPSAADNRPLKAEEFWDKVN-QCIFVSATPGDWEIGLSEGHVVDQIIRPTGVLDPE 422 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 + +R + QV+D+ E+ + A++ R L+T LTKRMAEDLT+Y E +RVRY+HSEV + Sbjct: 423 IMVRPSEGQVDDLLGEVRMRAEKDERTLVTTLTKRMAEDLTDYFNEHGVRVRYLHSEVHS 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ERIEII+DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQTIGRA Sbjct: 483 IERIEIIQDLRNGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRA 542 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV----KEKIMEVID 734 AR++ K ILYAD +T+S++ AI ET RRR Q E+N+K+ I P ++ I+ +D Sbjct: 543 ARHIEGKAILYADNMTESMEQAIGETERRRAIQAEYNEKNGITPTALIRRQSNSILSFLD 602 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +A ++ + L+ + A + L +M AA L FEEA+ RD IK L+ Sbjct: 603 VSRRLNAEELEQAV-SHSDELALEDIPALIGQLETKMKQAAKELKFEEASEFRDRIKHLR 661 >gi|120436638|ref|YP_862324.1| excinuclease ABC subunit B [Gramella forsetii KT0803] gi|117578788|emb|CAL67257.1| UvrABC system protein B [Gramella forsetii KT0803] Length = 667 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/660 (51%), Positives = 463/660 (70%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQP AI QL+ GI E+ Q LLGVTGSGKTFT+A VIE +Q+P +V+A Sbjct: 3 FNIKSDYKPTGDQPNAIKQLVTGIDKNEQYQTLLGVTGSGKTFTVANVIEDVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEA++P + TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IV++SVSC+YGIG+ + + +V ++ + + + L LV+ Y R Sbjct: 123 STTSSLLSGRRDVIVIASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHRLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FR+ GD++++FPS+ D A+R+ FG++IE+I F P T I E + I Sbjct: 183 TEAEFNHGNFRIKGDTVDVFPSY-ADNAFRIHFFGDEIEDIEAFDPGTNDVIEKYERLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A++ I+++L ++ + G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQGAIREIQDDLVKQVDYFQDIGKNLEAKRLDERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y PED L+ VDESHVTIPQ+ M+ GD RK L + Sbjct: 302 SGIENYSRYLDGRMPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMFGGDRSRKENLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++ +G+ VEQ+IRPTGL+DP V Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLLDPIV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + + RIL+T LTKRMAE+LT+YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQIRVDKDERILVTTLTKRMAEELTKYLTRIDIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVLVG+NLLREGLD+PE LVAI+DADKEGFLRS SL QTIGRAA Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----IMEVID 734 R+V+ + ILYAD IT S+Q ID+T RR+KQ+++N ++NI P + +K I E +D Sbjct: 542 RHVDGRAILYADKITNSMQKTIDQTEYRRQKQIDYNTENNITPTKLVKKFNNALIKEKLD 601 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I + + + + LSK + + ++ RK M AA L+F +AAR+RDEIK L+ Sbjct: 602 -IYDHETRPDLKAAEEEAEYLSKPQMEKKVREKRKAMETAAKELDFMQAARLRDEIKMLQ 660 >gi|183220252|ref|YP_001838248.1| excinuclease ABC subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910370|ref|YP_001961925.1| excinuclease ABC subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226695568|sp|B0SDE2|UVRB_LEPBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|226695569|sp|B0SLS0|UVRB_LEPBP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|167775046|gb|ABZ93347.1| Helicase subunit of the DNA excision repair complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778674|gb|ABZ96972.1| UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 664 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/653 (51%), Positives = 461/653 (70%), Gaps = 5/653 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M + + +GDQ AI + K + L+GVTGSGKTFTMA+VI +++P ++++ Sbjct: 4 FKMVSPFKAAGDQVKAIENIAKSFGEGKNKITLVGVTGSGKTFTMAEVITRVKKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+ S+NE+ID++R Sbjct: 64 HNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDMSMNEEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLLER+D I+VSSVSCIYG+GS E Y +V L++GD +++ +++ + QY R Sbjct: 124 RATSSLLERDDVIIVSSVSCIYGLGSPEDYMNSVVMLQVGDKIDRDQIIRKFLHIQYARN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD+IEI PS+ E+ R+ +FG++I+ +S+ PLTG+ ++ + +Y Sbjct: 184 DIDFSRGNFRVRGDTIEIMPSYQEE-GIRIELFGDEIDGLSKIDPLTGKVKIKLDRVVVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H++T P + AM+ IKEE+ + K+G+ LEA+R+E R YD+EML G C Sbjct: 243 PAKHFITSGPKIKDAMEKIKEEMAAQKEYFLKQGKHLEAERIESRTNYDMEMLLELGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+LTGR GE P L +Y P +D LL +DESHVT+PQI GMY GD RK TL E Sbjct: 303 GIENYSRHLTGRAEGERPACLLDYFPGKDFLLIIDESHVTLPQIGGMYAGDRSRKQTLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL F E+ + P T+ VSATP EL + + + EQIIRPTGL+DP V Sbjct: 363 FGFRLPSALDNRPLNFTEFEAMTPRTLYVSATPDQNELNKSEAVF-EQIIRPTGLLDPVV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q+ED+ +EI L Q R+L+T LTK+M+EDLT+Y E +++ Y+HSE+ T+ Sbjct: 422 EVRPTTNQIEDLLNEIRLRINQKERVLITTLTKKMSEDLTDYYKEVGLKIAYLHSEIDTI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EIIRDLR G +D +VGINLLREGLDIPE LVAILDADKEGFLR+ SL+QTIGRAA Sbjct: 482 ERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K ILYAD +T SI+ A+ ET RRR Q HN+K I PQ+++++I +++ + E Sbjct: 542 RNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEKMGITPQTIQKEIHDILPREMAE 601 Query: 740 DAATTNISIDAQ-QLSLSKKKGKAHLK-SLRKQMHLAADNLNFEEAARIRDEI 790 + + D + + +L K K K L+ +L+++M A++++FE+AA RD++ Sbjct: 602 EDSKEEALKDLEKEFTLKKYKTKDKLREALKREMLRYANDMDFEKAAMFRDKM 654 >gi|154494931|ref|ZP_02033936.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC 43184] gi|154085481|gb|EDN84526.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC 43184] Length = 675 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/665 (51%), Positives = 460/665 (69%), Gaps = 11/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA L GI S Q LLGVTGSGKTFT+A VI+ +++P ++++ Sbjct: 3 FELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSC+YG+ ++++ +V L+ G +++ +LL V Y Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 I RG FRV GD+++IFP+ + A+R+ + ++++ IS F P TGQ+I + + Sbjct: 183 NKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + +NTA+ I +L ++ L + G+ EA+RL +R+T+DLEM+ G Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR GE P L +Y P+D LL VDESHVTIPQI MY GD+ RK L Sbjct: 303 HCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKKNL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLP+ MDNRPL F+E+ L P I VSATP +ELE+ +GI+V+Q+IRPTGL+DP Sbjct: 363 VDYGFRLPAAMDNRPLTFDEFESLTPLAIYVSATPADYELEKSEGIVVDQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+R Q++D+ +EI A R+L+T LTKRMAE+LT YL IR Y+HS+V Sbjct: 423 VIEVRPTLNQIDDLMEEITQRAAVDERVLVTTLTKRMAEELTAYLTRMGIRCNYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI+I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERIQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733 AARNVN KVI YAD IT S++L +DET RRREKQL +N+KH I P+ V + + ++ Sbjct: 543 AARNVNGKVIFYADKITDSMRLTMDETARRREKQLAYNEKHGITPKQVIKNSVSLVAEKQ 602 Query: 734 DPILLEDAATT----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 P+ E A ++ D +++K+ + ++ +KQM AA L+F EAA+ RDE Sbjct: 603 QPVTGEPYAYVEPEPSLVADPVVQYMNRKQLEKAIERTKKQMMEAAKKLDFIEAAQFRDE 662 Query: 790 IKRLK 794 + +L+ Sbjct: 663 LVKLE 667 >gi|329920416|ref|ZP_08277148.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 1401G] gi|328936092|gb|EGG32545.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 1401G] Length = 665 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS LIQ +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSNRPLIQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|312873113|ref|ZP_07733172.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091346|gb|EFQ49731.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2062A-h1] Length = 665 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS L+Q +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|225010655|ref|ZP_03701125.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-3C] gi|225005208|gb|EEG43160.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-3C] Length = 665 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/658 (50%), Positives = 456/658 (69%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ + P+GDQP AIAQ++ GI ++ Q L+GVTGSGKTFT+A VI+ +Q+P +++A Sbjct: 3 FSLESPFKPTGDQPQAIAQIVSGIQAKTPSQTLVGVTGSGKTFTVANVIQEVQKPTLILA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEDIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +V++SVSC+YG+G+ + + +V+++ + + L LV+ Y R Sbjct: 123 STTSSLLSGREDVLVIASVSCLYGMGNPVEFEKNVVRIERDQIISRTAFLKQLVQALYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G+FRV GD +++FPS+ D A RV FG++IEEI F PL + + E ++I Sbjct: 183 TTADFVNGSFRVKGDVVDVFPSY-TDHAIRVHFFGDEIEEIESFDPLHNKTLETFEQLRI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +V+ L A+ I+E++ ++ + EG+ LEA+RLE+R T+DLEM+ G C Sbjct: 242 FPANMFVSSPDILQNAIHSIQEDMVKQVNFFKTEGKHLEAKRLEERTTFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVTIPQ+ M+ GD RK L Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPKDFLMVVDESHVTIPQVHAMFGGDRSRKENLVT 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L P + VSATP +ELEQ QG++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEILTPQALYVSATPADYELEQSQGVVVEQIIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ EI R L+T LTKRMAE+L +YL +R RY+HS+V TL Sbjct: 422 EVRPSTNQIDDLVAEIQDRVAIDERTLVTTLTKRMAEELAKYLTNIQVRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAI+DADKEGFLR+ SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNARSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K I+YAD TKS+Q IDET RREKQ+ +N HN P+++ + + V+ + Sbjct: 542 RNVNGKAIMYADKTTKSMQKTIDETNYRREKQIAYNTAHNTVPKALNKSLDNVLTKNSVS 601 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + AQ+ L+ ++ + + RK M AA NL+F EAA++RDEIK L+ Sbjct: 602 AYHFEKANHRAQEPDPNYLTPEERAKMIVAKRKTMEKAAKNLDFLEAAKLRDEIKALQ 659 >gi|312875110|ref|ZP_07735127.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2053A-b] gi|311089400|gb|EFQ47827.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2053A-b] Length = 665 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS L+Q +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|309808271|ref|ZP_07702178.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 01V1-a] gi|312870824|ref|ZP_07730930.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 3008A-a] gi|315653879|ref|ZP_07906795.1| excision endonuclease subunit UvrB [Lactobacillus iners ATCC 55195] gi|325913350|ref|ZP_08175718.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 60-B] gi|308168474|gb|EFO70585.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 01V1-a] gi|311093700|gb|EFQ52038.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 3008A-a] gi|315488575|gb|EFU78221.1| excision endonuclease subunit UvrB [Lactobacillus iners ATCC 55195] gi|325477453|gb|EGC80597.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 60-B] Length = 665 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS LIQ +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|154150649|ref|YP_001404267.1| excinuclease ABC subunit B [Candidatus Methanoregula boonei 6A8] gi|153999201|gb|ABS55624.1| excinuclease ABC, B subunit [Methanoregula boonei 6A8] Length = 660 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/660 (52%), Positives = 450/660 (68%), Gaps = 27/660 (4%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F++ + + P+G QP AIAQL G+ + Q LLGVTGSGKTFTMA VI A +P + Sbjct: 1 MTGFELVSSFLPAGSQPEAIAQLSDGLADNARFQTLLGVTGSGKTFTMANVIAAANKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQLY EF +FFPHN VEYFVSYYDYYQPE+Y+P D YIEK+S+IN +I+ Sbjct: 61 VIAHNKTLAAQLYQEFCDFFPHNRVEYFVSYYDYYQPESYIPAKDQYIEKDSAINPKIEM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R SAT SL R D IVV+SVSCI+G+G+ E++ + L +G + + E++S L+ Q+ Sbjct: 121 LRLSATASLSHRRDVIVVASVSCIFGLGNPENFRNLGFDLSVGQKIPRNEIMSRLLDIQF 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R DI + G FRV GD I+I P + D+ R+ +FG++IE+I E TG K ++ Sbjct: 181 ERNDIDLSPGRFRVKGDIIDIVPGYFNDI-IRIELFGDEIEKIREVDKNTGAKKEEMKYF 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y H+VTP TA+ I+EEL L L L+EA RL QR +DLEM+ TG Sbjct: 240 YVYPARHFVTPESAQKTAVASIQEELDEVLPTLG----LVEAHRLRQRTNFDLEMIRETG 295 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 SC+ IENYSR+ GR GE P L +Y P+D LL +DESH TIPQ+ GMY GD RK TL Sbjct: 296 SCKGIENYSRHFDGRKAGEKPYCLLDYFPDDFLLIIDESHQTIPQLHGMYNGDRSRKETL 355 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 YGFRLPS +DNRPL+F E+ + VSATPG +EL+ + VEQIIRPTGLVDP Sbjct: 356 VNYGFRLPSALDNRPLKFFEFEQYMRQVVFVSATPGPYELKHSTQV-VEQIIRPTGLVDP 414 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE+R Q DV +E+ +G R+L+T LTK++AE+L+EYL ++ IR RY+HSE++ Sbjct: 415 SVEVRPIEGQTLDVIEEVKKTIARGDRVLVTTLTKKLAEELSEYLADKGIRTRYLHSEIQ 474 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR SLIQ IGR Sbjct: 475 TLERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDTRSLIQIIGR 534 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVI 733 AARNVN+ V+LYAD++T S++ AI ET RRRE Q+ +N+ H+I PQ+ VKEK +E+ Sbjct: 535 AARNVNANVVLYADSMTDSMKSAISETRRRREMQIAYNENHHITPQTIIKPVKEKEVEIK 594 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 D + A N+ I+ L KQM AAD+L+FE A +R+++K+L Sbjct: 595 DTKHVPKAEIPNVVIE-----------------LEKQMRDAADSLDFERAIALREQVKKL 637 >gi|325911395|ref|ZP_08173807.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 143-D] gi|325476745|gb|EGC79899.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 143-D] Length = 665 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/657 (50%), Positives = 459/657 (69%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS LIQ +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSNRPLIQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRRIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKQIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|309804718|ref|ZP_07698783.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 09V1-c] gi|308166110|gb|EFO68328.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 09V1-c] Length = 665 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/656 (50%), Positives = 456/656 (69%), Gaps = 3/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS L+Q +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I+ D LS K+ + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKQINDFADLNFDELSAKQKDQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|16331511|ref|NP_442239.1| excinuclease ABC subunit B [Synechocystis sp. PCC 6803] gi|3123003|sp|Q55170|UVRB_SYNY3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|1001167|dbj|BAA10309.1| excinuclease ABC subunit B [Synechocystis sp. PCC 6803] Length = 669 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/660 (50%), Positives = 449/660 (68%), Gaps = 8/660 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + + P+GDQP AIA L++ + K Q LLG TG+GKTFTMA VI + RP +V+ Sbjct: 5 LFSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVL 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +R Sbjct: 65 AHNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSATRSL ER D IVV+S+SCIYG+G Y + V L++G + + ++ LV QY R Sbjct: 125 HSATRSLFERRDVIVVASISCIYGLGIPSQYLKAAVPLQVGAEYDPRLVIRDLVNVQYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FR+ GD +EI P++ ED R+ FG+++E + P++G+ +++++ I I Sbjct: 185 NDVELQRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEVEALRLIDPVSGEILQSLDRISI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y H+VTP TL A + I+ E++ ++ LEK L+EAQRL QR YDLEML G C Sbjct: 244 YPARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSRYL R GEPP L +Y PED LL +DESHVTIPQ+ GMY GD RK L + Sbjct: 304 NGVENYSRYLADRQAGEPPECLVDYFPEDWLLVIDESHVTIPQLRGMYNGDQARKKVLID 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS DNRPL+ EE+ + VSATPG WE+EQ + ++EQ+IRPTG++DP + Sbjct: 364 HGFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVWEIEQSEARVIEQVIRPTGVLDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R QV+D+Y EI + R+L+T LTKRMAEDLT+Y ER I+V+Y+HSE++++ Sbjct: 424 FVRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSEIQSI 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RIEI++ LR G+FDVL+G+NLLREGLD+PE LVAI+DADKEGFLR++ SLIQTIGRAA Sbjct: 484 QRIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737 R++ + ILYAD T S+Q AI ET RRR+ Q E+N+KH I PQ + ++ I L Sbjct: 544 RHIRGQAILYADNFTDSMQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQFLDI 603 Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L + AQ L L K ++ L ++M AA FE AA RD I+ L+ Sbjct: 604 SRRLNSQQLEEVYEQAQDLPLEKIPDL--IQQLEEKMQEAAKKQEFEVAAIYRDRIQHLR 661 >gi|298207799|ref|YP_003715978.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559] gi|83850437|gb|EAP88305.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559] Length = 668 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/660 (51%), Positives = 455/660 (68%), Gaps = 8/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++++Y P+GDQP AI QL+ I E+ LLGVTGSGKTFT+A VI+ +QRP +V+A Sbjct: 3 FTIESEYKPTGDQPGAIKQLVSNIEENEQYSTLLGVTGSGKTFTVANVIKEVQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFPHNA+EYFVSYYDYYQPEA++P + TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYSEFKSFFPHNAIEYFVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +VV+SVSC+YGIG+ + + ++ +K + + ELL LV+ Y R Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIKRDQQISRTELLKKLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FR+ GD+++++PS+ +D A+R+ FG++IE+I +F T I E + I Sbjct: 183 TTGEFNHGNFRIKGDTLDVYPSYADD-AFRIHFFGDEIEDIEQFDVQTNTVIEKYERLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L+ A+ I +L + + G+ LEA+RLE+R +DLEM++ G C Sbjct: 242 YPANMFVTSPDVLHKAIDNIALDLGKQTEYFKDIGKHLEAKRLEERTNFDLEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y PED L+ VDESHVTIPQ+ MY GD RK L + Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMYGGDRSRKENLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL+FEE+ L+ I VSATP +EL++ G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLKFEEFEALQNQVIYVSATPADYELQKTDGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + R L+T LTKRMAE+L +YL +IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQTRVDKDQRTLVTTLTKRMAEELVKYLTRIDIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QTIGRAA Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-----ID 734 R++ K I+YAD IT S+Q IDET RR KQ+ +N KHNI P ++K+ I ++ Sbjct: 542 RHLEGKAIMYADKITDSMQKTIDETEYRRTKQINYNTKHNITPTALKKGIDSALAGKKVE 601 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P E A T + + + ++ + ++ +RK M AA L+F EAAR RDEIK L+ Sbjct: 602 PYKFEKAPTLK-AAEEEVAYFTEDQLDKRIREVRKAMEKAAKELDFIEAARFRDEIKMLQ 660 >gi|259501061|ref|ZP_05743963.1| excision endonuclease subunit UvrB [Lactobacillus iners DSM 13335] gi|302190490|ref|ZP_07266744.1| excinuclease ABC subunit B [Lactobacillus iners AB-1] gi|259167755|gb|EEW52250.1| excision endonuclease subunit UvrB [Lactobacillus iners DSM 13335] Length = 665 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/657 (50%), Positives = 459/657 (69%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS L+Q +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKQIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|309809352|ref|ZP_07703214.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 2503V10-D] gi|312874337|ref|ZP_07734368.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2052A-d] gi|308170263|gb|EFO72294.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 2503V10-D] gi|311090103|gb|EFQ48516.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2052A-d] Length = 665 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/657 (50%), Positives = 459/657 (69%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EIN+ ++ R+ +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLE Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++IIRDLRLGKFDVLVGINLLREG+D+PE LVAILDADKEGFLRS L+Q +GRAAR Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N KVI+YAD IT S+Q AID T RRR Q+ N+KH+I P+++ + I ++I D Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608 Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I+ D L+ LS K+ + + +L +QM +AA L+FE AA +RD I LK Sbjct: 609 QKDKQIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664 >gi|292669610|ref|ZP_06603036.1| excision endonuclease subunit UvrB [Selenomonas noxia ATCC 43541] gi|292648819|gb|EFF66791.1| excision endonuclease subunit UvrB [Selenomonas noxia ATCC 43541] Length = 681 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/657 (53%), Positives = 459/657 (69%), Gaps = 3/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AIA L GI + Q+LLG TG+GKT+TMAKVIE +QRP +V+A Sbjct: 18 FKVAAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +RH Sbjct: 78 HNKTLAAQLASEFKSFFPDNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS ESY +M++ + G ++ ++E+L LV +Y+R Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EI+P+ + R+ MFG+++E I EF +G+ ++ Sbjct: 198 DIAFERGRFRVRGDVVEIYPAGYNNRGVRIEMFGDEVERIIEFDVTSGEVYGERLHSMVF 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + AM I+ EL RL EL+ G+LLEAQRLEQR YDLEM+E G C Sbjct: 258 PASHYVTDDEDMKIAMADIRTELAERLDELKGAGKLLEAQRLEQRTNYDLEMMEEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT RN G+ P TL +Y PED L+ +DESHVT+PQI MY GD RK +L + Sbjct: 318 GIENYSRHLTHRNAGDTPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKISLVDN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +E++Q Q + +QIIRPTGL+DP VE Sbjct: 378 GFRLPSAFDNRPLTFEEFAARVNQIVYVSATPGKYEIQQAQ-QVTQQIIRPTGLLDPVVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L ++ R+L+T LTKRMAE LT+YL E ++VRY+HS++ T+E Sbjct: 437 VRPLDGQIDDLLSEIRLRIERNERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATIE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR G+FDVLVGINLLREGLD+PE L+AILDADKEGFLRS T+LIQTIGRAAR Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N VI+Y D +T S+Q AI+ET RRR Q E+N+ H I P+++++ I+ +I+ L+ Sbjct: 557 NAGGHVIMYGDVVTGSMQRAIEETERRRTIQNEYNEAHGITPKTIEKPIVPLIEMTLVAA 616 Query: 741 AATTNIS-IDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D++ KK + +L KSL ++M A+ L FE AA +RD I L+ Sbjct: 617 EGKEPYGRQDSKAKKKLAKKDRENLVKSLLREMQQASRALEFERAAELRDMIVELEG 673 >gi|320529473|ref|ZP_08030559.1| excinuclease ABC subunit B [Selenomonas artemidis F0399] gi|320138267|gb|EFW30163.1| excinuclease ABC subunit B [Selenomonas artemidis F0399] Length = 678 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/656 (53%), Positives = 462/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AIA L GI + + Q+LLG TG+GKT+TMAKVIE +QRP +V+A Sbjct: 18 FKVVAPFEPMGDQPHAIADLAGGIENGQTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +RH Sbjct: 78 HNKTLAAQLASEFKSFFPNNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS ESY +M++ + G ++ ++E+L LV +Y+R Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + R+ MFG+++E I EF ++G+ ++ Sbjct: 198 DIAFERGRFRVRGDVVEIFPAGYNNRGVRIEMFGDEVERIIEFDVVSGEIYGERLHSMVF 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + AM I+ EL+ +L L+ EG+LLEAQRLEQR YDLEM++ G C Sbjct: 258 PASHYVTEDEDMKIAMADIRTELEEQLAMLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R GE P TL +Y PED L+ +DESHVT+PQI MY GD RK +L + Sbjct: 318 GIENYSRHLTHRKAGETPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATPG +E++Q Q + +QIIRPTGL+DP VE Sbjct: 378 GFRLPSAFDNRPLTFDEFAARVNQIVYVSATPGKYEMQQAQ-QVTQQIIRPTGLLDPVVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L ++ R+L+T LTKRMAE LT+YL E ++VRY+HS++ T+E Sbjct: 437 VRPLDGQIDDLLSEIRLRIERRERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATIE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR G+FDVLVGINLLREGLD+PE L+AILDADKEGFLRS TSLIQTIGRAAR Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+Y D +T S++ AIDET RRRE Q +NK+H I P+++ + ++ +I+ L+ Sbjct: 557 NASGHVIMYGDVVTGSMRRAIDETERRREIQEAYNKEHGIVPKTIVKPVVPLIEMTLVAA 616 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + KK + +L KSL ++M A+ L FE AA +RD I L+ Sbjct: 617 EGTAPYGKKDGKKKKLGKKERENLVKSLLREMQQASRALEFERAAELRDMIVELEG 672 >gi|332521822|ref|ZP_08398273.1| excinuclease ABC, B subunit [Lacinutrix algicola 5H-3-7-4] gi|332042652|gb|EGI78853.1| excinuclease ABC, B subunit [Lacinutrix algicola 5H-3-7-4] Length = 667 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/659 (50%), Positives = 470/659 (71%), Gaps = 13/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+++ P+GDQPAAI QL+ GI++ EK Q LLGVTGSGKTFT+AK +E++++P +V+A Sbjct: 3 FKIQSEFSPTGDQPAAIKQLVDGINANEKYQTLLGVTGSGKTFTVAKFVESVKKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + YIEK+ SINE+I++MR Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGVYIEKDLSINEEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +VV+SVSC+YGIG+ + + ++ +K + + +LL LV+ Y R Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVITIKRDQEISRTKLLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FR+ GD+++IFPS+ +D A+RV FG++IE I +F T + I + + I Sbjct: 183 TEADFKHGNFRIKGDTVDIFPSYADD-AFRVHFFGDEIEMIEQFNIQTNEVIDEYDRLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+K I+++L + + G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQGAIKEIQDDLVKQHDYFKDIGKHLEAKRLKERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ VDESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPDDYLMVVDESHVTVSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ + VSATP +EL++ G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVLYVSATPADYELQKTDGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LT+YL +IRVRY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLSRIDIRVRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R++N K I+YAD ITKS+Q IDET RR KQ+++N +N+ P+++ + +D +L + Sbjct: 542 RHLNGKAIMYADKITKSMQSTIDETEYRRAKQIKYNTDNNLTPKALNKS----LDNVLSK 597 Query: 740 DAATT-NISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 ++ +T + ++A + + L+K + + ++ RK M AA L+F AA++RDEIK Sbjct: 598 NSVSTYSYELEAARAAEPESEYLTKAELEKKIREKRKLMEKAAKALDFIIAAQLRDEIK 656 >gi|260881593|ref|ZP_05404787.2| excinuclease ABC subunit B [Mitsuokella multacida DSM 20544] gi|260848464|gb|EEX68471.1| excinuclease ABC subunit B [Mitsuokella multacida DSM 20544] Length = 699 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/680 (51%), Positives = 469/680 (68%), Gaps = 5/680 (0%) Query: 121 KIWTPHRSWSI----NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176 +IW +R + H + F++ + P GDQP AIA+L G+ + ++ Q+LLG Sbjct: 3 RIWEGNRMAMVPKLNTMHFDEERPFEVVAPFEPMGDQPQAIAELAAGVENGQQAQVLLGA 62 Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236 TG+GKT+T+AKVIE +Q+P +V+A NK LAAQL SEFK FFP+N V YFVSYYD+YQPEA Sbjct: 63 TGTGKTYTIAKVIEKVQKPTLVIAHNKTLAAQLASEFKAFFPNNYVGYFVSYYDFYQPEA 122 Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296 Y+ TDTYIEK++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ Sbjct: 123 YIASTDTYIEKDASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLS 182 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L G V++ +L LV +Y+R D+ RG FRV GD IE+FP+ + A R+ +FG++ Sbjct: 183 LHKGQIVDRDAILKKLVSIRYERNDVAFERGQFRVRGDVIEVFPAGYNNRAVRIELFGDE 242 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 ++ I EF +TG+ ++ SHYVT L AMK I+ E++ ++ + + EG+L Sbjct: 243 VDRIVEFDVVTGEVYGERTHSMVFPASHYVTEDEDLKIAMKDIEAEMEEQVKKFKAEGKL 302 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 +EAQR+EQR YDLEM++ G C IENYSR+LT R GE P TL +Y PED L+ +DES Sbjct: 303 IEAQRIEQRTRYDLEMMQEMGYCSGIENYSRHLTHRKAGEAPYTLLDYFPEDFLIVMDES 362 Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 HVT+PQ+ MY GD RK +L E GFRLPS DNRPL FEE+ I VSATPG +E Sbjct: 363 HVTLPQLHAMYAGDRSRKVSLVENGFRLPSAFDNRPLTFEEFAARINQIIYVSATPGKYE 422 Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596 LEQ Q + +QIIRPTGL+DP +E+R Q++D+ EI + ++ R+L+T LTK+MAE Sbjct: 423 LEQAQ-QVAQQIIRPTGLLDPEIEVRPLEGQIDDLLAEIKVRIERNERVLVTTLTKKMAE 481 Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +LT+Y E ++VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE L+AI Sbjct: 482 NLTDYFTEVGVKVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAI 541 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 LDADKEGFLRS TSLIQ IGRAARN VI+YAD IT S++ AIDET RRRE Q +NK Sbjct: 542 LDADKEGFLRSDTSLIQIIGRAARNARGHVIMYADRITDSMKRAIDETARRREIQDGYNK 601 Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 H I P+++ + I +I+ L+ ++ + L+KK + +K+L ++M A+ Sbjct: 602 AHGITPKTIVKPIKPLIETTLVAESGGKYEVKKGSKKKLTKKDRENLIKTLTREMQQASR 661 Query: 777 NLNFEEAARIRDEIKRLKSS 796 L FE AA +RD I L S Sbjct: 662 ALEFERAAELRDMILELDGS 681 >gi|284038488|ref|YP_003388418.1| excinuclease ABC subunit B [Spirosoma linguale DSM 74] gi|283817781|gb|ADB39619.1| excinuclease ABC, B subunit [Spirosoma linguale DSM 74] Length = 673 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/664 (49%), Positives = 466/664 (70%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L+KG++ E Q+LLGVTGSGKTFT+A +I RP +V++ Sbjct: 3 FKLTSEFQPTGDQPKAIEKLVKGVNEGEPAQVLLGVTGSGKTFTIANLIARTNRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ T+TYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAYIATTNTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +L+ R D IVV+SVSCIYG+G+ E + + +V++ +G+ + + L LV Y R Sbjct: 123 AATSALMSGRRDVIVVASVSCIYGMGNPEEFKRNVVRIGVGEQMSRNNFLHQLVSILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + RG FRV GD+++++ ++ D A+RV FG++IE I P TG+K+ + I Sbjct: 183 TEGEFQRGNFRVKGDTVDLYVAY-ADFAYRVIFFGDEIETIQRIDPGTGKKLSEESMVTI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT R TLN A+ I++++ ++ E E R +EA R+ +R +DLEM+ G C Sbjct: 242 FPANLFVTGRDTLNGAIYQIQDDMVAQVRYFESELREMEATRIRERTEFDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG+ P L +Y P+D L+ VDESHVTIPQI M+ GD RK L + Sbjct: 302 SGIENYSRYFDKRLPGQRPFCLLDYFPDDFLMVVDESHVTIPQIRAMWGGDRSRKTALVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS MDNRPL F+E+ L +I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPSAMDNRPLTFQEFEDLSGQSIYVSATPSDYELRKSEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ + I+ ++G R+L+T LTKRMAE+LT+YL I+ RY+HSEVKTL Sbjct: 422 EVRPSLNQIDDLLEAIDGRIKRGERVLVTTLTKRMAEELTKYLDRVGIKTRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+RDLRLG FDVLVG+NLLREGLD+PE LVAI+DADKEGFLR SLIQTIGRAA Sbjct: 482 DRVEILRDLRLGNFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDIRSLIQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N KVI+YAD IT S+Q AIDET RRR QLE+N + I P +V + ++ + Sbjct: 542 RNANGKVIMYADRITGSMQKAIDETNRRRAIQLEYNTDNGITPTTVLKSRESIMGQTKVA 601 Query: 740 DAATTNISIDAQQLSLS-----KKKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEI 790 D+ + ++ +++ ++ + GK L+ + + +M AA +L+F EAAR+RDE+ Sbjct: 602 DSKAKHFYVEPEEIRIAADPVVRYMGKGDLEKIIQETQSKMERAAKDLDFMEAARLRDEL 661 Query: 791 KRLK 794 +L+ Sbjct: 662 FQLR 665 >gi|225351877|ref|ZP_03742900.1| hypothetical protein BIFPSEUDO_03479 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157124|gb|EEG70463.1| hypothetical protein BIFPSEUDO_03479 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 711 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L + I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 20 FVVKSPYKPSGDQPKAIEELAERIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 79 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 80 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 139 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ L+ G +++ +LL + V QYKR Sbjct: 140 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDDLLRTFVAMQYKRN 199 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG I + I+ Sbjct: 200 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIGRQSQVHIF 258 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I++EL R EL K+G+ LEAQRL R TYDLEML G C Sbjct: 259 PASHYVAGPQRMERALSTIQQELDQRTAELRKQGKELEAQRLTMRTTYDLEMLSQVGVCS 318 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR PG PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 319 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 378 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +EL G+ VEQIIRPTGLVDP ++ Sbjct: 379 GFRLPSAMDNRPLKWPEFLERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 437 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 438 VRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 497 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 498 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 557 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD IT+++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D + ED Sbjct: 558 NVSGTVIMYADDITEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 617 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A +++ + A S ++ + LK+ L +QM Sbjct: 618 VDTQTLLGTGYRNEGKAGNSHLGVPATSKEESDRRHEEILKAGLPAQDLADLIRQLSEQM 677 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 AA+ L FE AAR+RDEI+ LK Sbjct: 678 RAAAEQLQFELAARLRDEIRDLK 700 >gi|313895915|ref|ZP_07829469.1| excinuclease ABC, B subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312975340|gb|EFR40801.1| excinuclease ABC, B subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 678 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/656 (53%), Positives = 462/656 (70%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P GDQP AIA L GI + + Q+LLG TG+GKT+TMAKVIE +QRP +V+A Sbjct: 18 FKVIAPFEPMGDQPHAIADLAGGIENGQTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK+FFP+N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +RH Sbjct: 78 HNKTLAAQLASEFKSFFPNNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS ESY +M++ + G ++ ++E+L LV +Y+R Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ + R+ MFG+++E I EF ++G+ ++ Sbjct: 198 DIAFERGRFRVRGDVVEIFPAGYNNRGVRIEMFGDEVERIIEFDVVSGEIYGERLHSMVF 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + AM I+ EL+ +L L+ EG+LLEAQRLEQR YDLEM++ G C Sbjct: 258 PASHYVTEDEDMKIAMADIRTELEEQLAMLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+LT R GE P TL +Y PED L+ +DESHVT+PQI MY GD RK +L + Sbjct: 318 GIENYSRHLTHRKAGETPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F+E+ + VSATPG +E++Q Q + +QIIRPTGL+DP VE Sbjct: 378 GFRLPSAFDNRPLTFDEFAARVNQIVYVSATPGKYEMQQAQ-QVTQQIIRPTGLLDPVVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI L ++ R+L+T LTKRMAE LT+YL E ++VRY+HS++ T+E Sbjct: 437 VRPLDGQIDDLLSEIRLRIERRERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATIE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EII DLR G+FDVLVGINLLREGLD+PE L+AILDADKEGFLRS TSLIQTIGRAAR Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTSLIQTIGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + VI+Y D +T S++ AIDET RRRE Q +NK+H I P+++ + ++ +I+ L+ Sbjct: 557 NASGHVIMYGDVVTGSMRRAIDETERRREIQEAYNKEHGIVPKTIVKPVVPLIEMTLVAA 616 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + KK + +L KSL ++M A+ L FE AA +RD I L+ Sbjct: 617 EGTAPYGKKDGKKKKLGKKERENLVKSLLREMQQASRALEFERAAELRDMIVELEG 672 >gi|154174543|ref|YP_001408491.1| excinuclease ABC subunit B [Campylobacter curvus 525.92] gi|112802728|gb|EAU00072.1| excinuclease ABC, B subunit [Campylobacter curvus 525.92] Length = 659 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/658 (50%), Positives = 452/658 (68%), Gaps = 8/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ AI ++K I S K LLGVTGSGKTFTMA VI + P ++M Sbjct: 4 FEISSKFSPSPDQARAIENIVKSIKSGNKYNTLLGVTGSGKTFTMANVIRELNMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D YIEK+SS+NE+++RMR Sbjct: 64 HNKSLAAQLYSEFKGFFPNNHVEYFISYYDYYQPEAYIPRSDLYIEKDSSVNEELERMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL ND I V+SVS YG+G+ Y M+ L +G+ + Q+ LL+ LV YKR Sbjct: 124 SATASLLSFNDVICVASVSANYGLGNPSEYQGMVAYLNVGERLNQRNLLTKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++I+P++ D A RV FG++IE + F L +K+++V +Y Sbjct: 184 DAYFDRGDFRVNGDVVDIYPAYYNDEALRVEFFGDEIEAMYHFDVLDNKKLKDVGKFTLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S ++ L A+K I++EL RL E G+L+EAQRL+QR+ +DLEM+ +TG C+ Sbjct: 244 ATSQFIVGADRLKVAIKDIEKELDERLGEFNAAGKLVEAQRLKQRVEFDLEMMSSTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI----PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 IENY+R+LTG+ PGE P ++F+Y + L+ VDESHV++PQ GMY GD RK Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFELLNSGEYLVIVDESHVSLPQFRGMYAGDRSRKEV 363 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L EYGFRLPS +DNRPL+F+E+ + + VSATP EL G + EQI+RPTGL+D Sbjct: 364 LVEYGFRLPSALDNRPLKFDEFINKKAKFLFVSATPNELELNLSSGHVYEQILRPTGLLD 423 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +EI+ + QVE ++DE ++ R+L+TVLTK+MAE+L+ Y E ++V+YMHS++ Sbjct: 424 PLIEIKDSDNQVEILFDEAKKVIERNERVLVTVLTKKMAEELSRYYTELGVKVKYMHSDI 483 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT+G Sbjct: 484 DAIERNEIIRGLRGGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMG 543 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARNVN +V+++A ITKS+Q A+D T RR+ Q E+NK H I P+S I E + Sbjct: 544 RAARNVNGRVLMFAKKITKSMQEAMDTTNARRKLQDEYNKAHGITPRSASRNIEESLH-- 601 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ED T + + ++ K +K LRKQM AA L FE+AA +RDEI +++ Sbjct: 602 -IEDEGETYRKAKNLEKMPAAERAKI-VKELRKQMLEAAAQLEFEKAATLRDEIAKIR 657 >gi|88602451|ref|YP_502629.1| excinuclease ABC subunit B [Methanospirillum hungatei JF-1] gi|88187913|gb|ABD40910.1| Excinuclease ABC subunit B [Methanospirillum hungatei JF-1] Length = 642 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/663 (51%), Positives = 452/663 (68%), Gaps = 31/663 (4%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T FQ+ +++ P+G QP AI QL++G S Q LLGVTGSGKTFTMA VIE +Q P + Sbjct: 1 MTEFQLVSNFKPTGSQPDAIRQLVEGFKSGSSFQTLLGVTGSGKTFTMANVIEQLQIPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQLY EF++FFP+N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I+ Sbjct: 61 VIAHNKTLAAQLYHEFRDFFPNNRVEYFVSYYDYYQPESYIPKKDQYIEKDAQINPKIEM 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 MR SAT SLL RND IV++SVSCIYG+G ++Y +M L +G + ++E++S LV Y Sbjct: 121 MRLSATASLLSRNDVIVIASVSCIYGLGRPDTYKRMGFDLGVGQKISRREIISRLVDNLY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R +I II G FRV GD I++ PS+ ++ R+ +FG+++E I+E TG + + + Sbjct: 181 ERNEIEIIPGRFRVKGDIIDLVPSYYNNI-IRIELFGDEVERITEINRTTGNPVERLRHV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y SHYV A+ I++EL RL L +LE+ RL QR YD+EM+ TG Sbjct: 240 YVYPASHYVIDESQKEKALLEIEKELNERLPHLG----MLESHRLRQRTMYDIEMIRETG 295 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 SC+ IENYSR+ GR PGE P L +Y PE L+F+DESH T+PQ+ M+ GD RK L Sbjct: 296 SCKGIENYSRFFDGRKPGEKPYCLLDYFPERFLIFIDESHQTLPQVRAMFHGDRSRKTPL 355 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS DNRPLRF E+ I VSATPG +EL+ +VEQIIRPTGLVDP Sbjct: 356 VEYGFRLPSAFDNRPLRFFEFEQYLKNVICVSATPGDYELDHSTQ-VVEQIIRPTGLVDP 414 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE+R + Q+E++ EI ++G RIL+T LTKR+AE+LTEYL ++ RY+HS++ Sbjct: 415 VVEVRPIQGQMENIKFEIQRTIERGDRILITTLTKRLAEELTEYLLSHGVKTRYLHSDID 474 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER EIIR+LRLG FDVLVGINLLREGLDIPE G + ILDADKEGFLR SLIQ IGR Sbjct: 475 TLERTEIIRELRLGSFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARSLIQIIGR 534 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN ++ V+LYADT+T S+Q AIDET RRR Q+E+N H I P+++++ + + Sbjct: 535 AARNSDAFVVLYADTVTGSMQKAIDETERRRALQIEYNTSHGITPKTIQKPVRD------ 588 Query: 738 LEDAATTNISIDAQQLSLSKKKG--KAHLK----SLRKQMHLAADNLNFEEAARIRDEIK 791 Q++ L KKK K+ L +L QM AA L+FEEA R+RD++ Sbjct: 589 -------------QEIDLGKKKKVPKSALPNLIINLESQMRSAAQRLDFEEAIRLRDQLT 635 Query: 792 RLK 794 L+ Sbjct: 636 ALR 638 >gi|169837276|ref|ZP_02870464.1| excinuclease ABC subunit B [candidate division TM7 single-cell isolate TM7a] Length = 612 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/597 (54%), Positives = 430/597 (72%), Gaps = 2/597 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP AI L G+ ++ Q LLGVTGSGKTFTMA +I Q P +V+A Sbjct: 3 FKLKSKYKPTGDQPEAIKSLTAGLSRGDREQTLLGVTGSGKTFTMANIIANYQAPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N V YFVSY+DYYQPEAY+ +DTYIEK+S IN++IDR+RH Sbjct: 63 HNKTLAAQLYSEFKQFFPENEVHYFVSYFDYYQPEAYIASSDTYIEKDSKINDEIDRLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +LL R+D I+V+SVSCIYGIGS ++Y+ M + +K+G+ Q + + L QY+R Sbjct: 123 AATTALLTRSDTIIVASVSCIYGIGSPDTYADMSINIKMGEHRRQDKFIRQLTDIQYQRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD ++IFP+ + D A+R+ FGN+++ I+ PLTG+ I I+ Sbjct: 183 DIDFDRGIFRVKGDVVDIFPAGM-DQAYRIEFFGNEVDRITRLNPLTGEITGEPRQISIF 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 NSHY TP+ + A++ IK+E + RL E+ + LEAQRL QR YDLEMLE TG + Sbjct: 242 PNSHYATPKEMIMKAIEGIKKEFEDRLAWFERNHKFLEAQRLSQRTKYDLEMLEQTGFVK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+ R GE P TL +Y P+D LL VDESH+T+PQ+ GMY GD RK L E+ Sbjct: 302 GIENYSRYLSNREQGEQPATLIDYFPDDWLLLVDESHMTLPQVRGMYNGDRARKEVLVEH 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ I +SATPG +EL Q + QIIRPTGL+DP ++ Sbjct: 362 GFRLPSALDNRPLKFEEFYNHINQAIYISATPGDYEL-QHSSTLARQIIRPTGLLDPEID 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV+D+ EI + R+L+T LTKRMAEDL+ YL E I+ Y+HSE+ TLE Sbjct: 421 IRPTEGQVDDLIKEIRDRINKKQRVLVTTLTKRMAEDLSTYLQELGIKTAYIHSEIDTLE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +I+RDLR G +DVLVGINLLREGLD+PE LVAI+DADKEGFLRS+++LIQTIGRAAR Sbjct: 481 RGDILRDLRSGVYDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSESALIQTIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 +V KV++Y D IT+S++LAIDET RR+ Q ++N ++NI P+ V + I E + I+ Sbjct: 541 HVEGKVLMYGDVITRSMRLAIDETNSRRKLQQQYNLENNITPRGVDKAIDEGLRAII 597 >gi|307718238|ref|YP_003873770.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192] gi|306531963|gb|ADN01497.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192] Length = 661 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/657 (52%), Positives = 468/657 (71%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQ AIA L +G+ + Q L GVTGSGKTFTMAK++E +Q P +V++ Sbjct: 4 FRVEAPFGPAGDQGKAIALLSEGVKKGYRYQTLKGVTGSGKTFTMAKIVEEVQLPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV D YIEK++SINE+IDR+R Sbjct: 64 HNKTLAAQLYREFKEFFPHNAVEYFVSYYDYYQPEAYVASKDLYIEKDASINEEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVV++VSCIYG+G+ E + +M V++ +G ++ L LV QY+R Sbjct: 124 SATASLMERPDVIVVATVSCIYGLGNPEHFREMRVRIDVGQHLDLGMLKQQLVSLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV G+ ++I+P++LE V +RV + +++ I +PLT + + +++ +Y Sbjct: 184 DAVLTRGTFRVRGEVVDIYPAYLEHV-YRVELDWDEVVSIKVVHPLTLEVLDERKSLFVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + +A++ I+EEL+ R EL + +L+EAQRL+ R YDLEMLE G C Sbjct: 243 PAKHFVLPEEQIRSAIQGIREELEERYRELLSQNKLVEAQRLKARTEYDLEMLEEMGYCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG+ P L +Y P+ L+F+DESHVT+PQ+ MY GD RK +L EY Sbjct: 303 GIENYSRHLSGRKPGQRPAVLLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLR+EE+ + P I VSATP EL + +VEQIIRPTGL+DP VE Sbjct: 363 GFRLPSALDNRPLRYEEFEAIVPQVIYVSATPEEEELSKSSQ-VVEQIIRPTGLLDPEVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+Y EI ++G R+L+T LTK+MAEDLT+YL +RVRY+H+EV+T+E Sbjct: 422 VRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAEDLTDYLQSLGLRVRYLHAEVETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++RDLR G+FDVLVGINLLREGLD+PE LVAILDADK GFLRS TSLIQ +GRAAR Sbjct: 482 RVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSATSLIQIMGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738 N KVI+YAD +T +++ AI+ET RRR Q +N++H I PQ++++ + ++++ + Sbjct: 542 NAEGKVIMYADRVTDAMREAIEETRRRRTIQEAYNREHGITPQTIQKSVRDILERKMKVK 601 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E+ I + + L + K ++ L K+M A NL FE AA IRDEI RLK Sbjct: 602 EEVERKEIEVLVHGYNILVPSERKKLIQRLEKEMLERAKNLEFEMAAVIRDEIARLK 658 >gi|228469698|ref|ZP_04054666.1| excinuclease ABC subunit B [Porphyromonas uenonis 60-3] gi|228308717|gb|EEK17443.1| excinuclease ABC subunit B [Porphyromonas uenonis 60-3] Length = 677 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/671 (50%), Positives = 454/671 (67%), Gaps = 19/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + RP +V++ Sbjct: 3 FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVDRPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+ TDTYIEK+ +IN ++D++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVV+SVSCIYG+ + + I++L++G +E+ L+ L + Y Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G+FRV GD+I+IFP+ E VA+R+ ++ +I+ I+ P++ + ++ + Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDEEIDRITIIDPISAESQGTLDNL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +IY + +VT A+ IK++L R ELE+EG L EA+RL +R++YDLEM++ G Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR PGE P L +Y P+D LL +DESHV+IPQI MY GD RK TL Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDRARKTTL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ +DNRPL F E+ L I VSATP +EL +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPAALDNRPLEFSEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+EIR QV+D+ +EI + ++ R L+T LTKRMAE+L++YL I+ Y+HS+V Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI+I+ LR G +DVLVG+NLLREGLD PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ VI YAD+IT S+Q IDET RRR KQ+ +N++H+I P V K + Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEEHHITPTQVVSKRTNALSQ-- 600 Query: 738 LEDAATTNISIDAQQLS-------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 E TT S A+ L++ K ++ +RKQM+ AA LNF EAA Sbjct: 601 -EGYVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPELIEQVRKQMYAAAKELNFVEAA 659 Query: 785 RIRDEIKRLKS 795 R+RDE+ L+S Sbjct: 660 RLRDEMYALQS 670 >gi|288818056|ref|YP_003432403.1| excinuclease ABC subunit B [Hydrogenobacter thermophilus TK-6] gi|288787455|dbj|BAI69202.1| excinuclease ABC subunit B [Hydrogenobacter thermophilus TK-6] gi|308751657|gb|ADO45140.1| excinuclease ABC, B subunit [Hydrogenobacter thermophilus TK-6] Length = 663 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/654 (50%), Positives = 451/654 (68%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +QT P+GDQP AI +LL + K Q+LLG TG+GKTFT+A +I +P +V+A Sbjct: 7 FVLQTSLKPAGDQPKAIEELLNNLERGVKEQVLLGATGTGKTFTLANLIAQYNKPTLVIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK+LAAQLY EFK FP+NAVEYF+SYYDYYQPEAY+P D YIEK++SIN+ ++R RH Sbjct: 67 HNKVLAAQLYREFKELFPNNAVEYFISYYDYYQPEAYIPEKDLYIEKDASINQVLERYRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D IVV+SVSCIYG+GS Y M ++L++G+ + +LL LV+ Y+R Sbjct: 127 SATISVLERRDVIVVASVSCIYGLGSPHHYYSMRIKLRVGERISTSKLLRKLVELGYQRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R TF V +++E+ PS ED R+ + ++IE I+ L I +E I+ Sbjct: 187 DYTYKRATFSVRANALEVIPSDAEDRIVRIEFWDDEIERITLIDALNRHTIGELEEFTIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHY+ PR T+ A+ I+ +L R+ + +G+ LEA+RL QR YDLEM+ G C+ Sbjct: 247 PSSHYIAPRSTVEDALLQIERDLIERVKWFKNQGKELEARRLYQRTMYDLEMIREIGHCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y P+D LL +DESHVT+PQI MY GD RK L EY Sbjct: 307 GIENYSRYFDGRKPGEPPFTLLDYFPKDFLLIIDESHVTVPQIRAMYNGDRSRKEKLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+RLPS +DNRPL+FEE+ I VSATPG WE+++ +GIIVEQI+RPTGL+DP VE Sbjct: 367 GWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWEIQRSRGIIVEQIVRPTGLLDPEVE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R Q+ED+ EI + ++ R ++ TKR+AE++ +YL ER + +YMHS++ +E Sbjct: 427 VRPTRGQLEDLLREIQIRKKRNERAIVLTTTKRLAEEVADYLTERGVSAKYMHSDLDAIE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R II+DLR G DV+VG+NLLREGLD+PE LVAILDADKEGFLRS TSLIQ IGRAAR Sbjct: 487 RARIIKDLREGSIDVIVGVNLLREGLDLPEVSLVAILDADKEGFLRSYTSLIQIIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD +T+S++ AI+ET RRREKQ +HN H I P+S+ + V D + +E+ Sbjct: 547 NINGKAILYADRMTESMKRAIEETRRRREKQRKHNHLHGITPRSI---VKPVKDLLSIEE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + S++ ++ L ++M A FE+AA++RDEIK+L+ Sbjct: 604 LDYVKVPSEIPKGIKSEEDIIRRIEKLEREMLECAKKWEFEKAAKLRDEIKKLR 657 >gi|89890826|ref|ZP_01202335.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) [Flavobacteria bacterium BBFL7] gi|89516971|gb|EAS19629.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) [Flavobacteria bacterium BBFL7] Length = 666 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/662 (50%), Positives = 462/662 (69%), Gaps = 12/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q+++ P+GDQP AI L+ GI++ ++ Q LLGVTGSGKTFT A VI+ QRP ++++ Sbjct: 3 FKIQSEFKPTGDQPKAIKSLVDGINNGDQYQTLLGVTGSGKTFTAANVIQETQRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEA++P + TYIEK+ SINE I++MR Sbjct: 63 HNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEDIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D IVV+SVSC+YGIG+ + + +++LK + + + +LL LV+ Y R Sbjct: 123 STTSALLSGRRDVIVVASVSCLYGIGNPVEFQKNVIRLKRDEVIARTQLLHKLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RG FR+ GD+I++FPS+ D A+++ FG++IE I F P+ G+ + + I I Sbjct: 183 TTADFNRGNFRINGDTIDVFPSY-ADYAFKIHFFGDEIELIETFNPVDGRLMEQWQEITI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+E+L ++ ++ G+ LEA+RL++R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQNAIHSIQEDLVKQVDYFKEIGKPLEAKRLQERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y PED L+ +DESHVT+PQ+S MY GD RK L + Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPEDFLMVIDESHVTVPQVSAMYGGDRSRKENLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ + VSATP +EL + +G+ EQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMLQNQVLYVSATPADYELAKTEGVYTEQIIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EI+ + R+L+T LTKRMAE+LT+YL +IR RY+HS+V TL Sbjct: 422 EVRPSQNQIDDLVEEIHKRVELDERVLVTTLTKRMAEELTKYLSRISIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ SL QTIGRAA Sbjct: 482 ERVAIMHDLRSGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN ILYAD IT S+Q ID+T RR KQ+ +N+ H + P ++K+ + + + Sbjct: 542 RNVNGLAILYADKITNSMQETIDQTEYRRSKQIAYNETHGLKPMAIKKSLETALTK---K 598 Query: 740 DAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 AT I + + + LSK+K + ++ RKQM AA L+F EAAR+RD+IK Sbjct: 599 REATYTIEKSLNLAAAEEEATYLSKEKLEQKIRDTRKQMEKAAKELDFMEAARLRDQIKM 658 Query: 793 LK 794 L+ Sbjct: 659 LQ 660 >gi|34558250|ref|NP_908065.1| excinuclease ABC subunit B [Wolinella succinogenes DSM 1740] gi|81832798|sp|Q7M806|UVRB_WOLSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|34483969|emb|CAE10965.1| EXINUCLEASE ABC SUBUNIT B [Wolinella succinogenes] Length = 658 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/658 (51%), Positives = 463/658 (70%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L + I ++ + Q L+GVTGSGKT+TMAK+IE +Q P ++M Sbjct: 4 FKVHSPYEPAGDQPQAIEKLAQSIQTQHRYQTLVGVTGSGKTYTMAKIIEKLQIPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE+++R+R Sbjct: 64 HNKTLAAQLYSEFRGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D IVV+SVS YG+GS Y QMI +L++G+ + Q+ELL LV+ YKR Sbjct: 124 SATTSLLAHEDVIVVASVSANYGLGSPAEYVQMIQKLEVGERLHQRELLLRLVEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ I+I+P++ ED RV FG++IE I+ + Q + + + +Y Sbjct: 184 DNFFDRGDFRVNGEVIDIYPAYSEDEVVRVEFFGDEIERIALLDSVDRQALGELPSYILY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ + L+ A+K I+ EL+ RL +KEGR++E RL+QR +DLEM+ TG C+ Sbjct: 244 AANQFIVGQNRLHEALKTIESELEERLAFYQKEGRMVEHARLKQRTEFDLEMIGATGICK 303 Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+LTG+ GE P +L FE+ + L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYSRHLTGKKVGETPYSLLDYFEFKGKPYLIIVDESHVSLPQFGGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 E+GFRLPS +DNRPL +EE+ P + VSATP ELE Q I EQI+RPTGL+DP Sbjct: 364 VEHGFRLPSALDNRPLTYEEFITKAPHYLFVSATPAPRELELSQAQIAEQIVRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+R ++ QV ++DEI +G R+L+T LTK+MAE+LT+Y + I+VRYMHSE+ Sbjct: 424 LYEVRDSQNQVAALFDEIKAVVARGERVLITALTKKMAEELTKYYADLGIKVRYMHSEID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR LR G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN+N +V+L+A IT S++ A++ T RR KQ E N+KH I P+SV K+ E + Sbjct: 544 AARNLNGRVLLFAQKITPSMKRAMEVTDYRRSKQQEFNQKHGITPKSVTRKLDE---ELR 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 LE ++ + K + + +K + K+MH AA L+FEEAAR+RDEI ++++ Sbjct: 601 LEGVGDLYAKASKKE-KIPKAEREKIIKEMTKKMHEAAKLLDFEEAARLRDEIAKIRA 657 >gi|293375597|ref|ZP_06621871.1| excinuclease ABC, B subunit [Turicibacter sanguinis PC909] gi|325836778|ref|ZP_08166245.1| excinuclease ABC, B subunit [Turicibacter sp. HGF1] gi|292645814|gb|EFF63850.1| excinuclease ABC, B subunit [Turicibacter sanguinis PC909] gi|325491156|gb|EGC93445.1| excinuclease ABC, B subunit [Turicibacter sp. HGF1] Length = 657 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/655 (52%), Positives = 460/655 (70%), Gaps = 9/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL++ I K Q+LLG TG+GKTFT+A V++A+ +P +V+A Sbjct: 6 FEIVSKYSPSGDQPKAIKQLVENIEHGVKEQVLLGATGTGKTFTIANVVQAVNKPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++ N++ID++RH Sbjct: 66 HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAKTNDEIDKLRH 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYGIG E Y M+V +++G +E+ +LL LV+ QY+R Sbjct: 126 SATAALLERNDVIVVASVSCIYGIGDPEEYKSMMVSIRVGMEMERNDLLKELVRIQYQRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EI P E A R+ FG +++ I E LTG+ + + + I+ Sbjct: 186 DIDFHRGTFRVRGDIVEILPIATEKNAIRIEFFGEEVDRIREIDTLTGEVLSERKHVVIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT + A+K I+EEL+ ++ + E +L+EAQR+EQR YDLEM+ G C Sbjct: 246 PASHFVTGEERMKIALKNIEEELEQQIEYFKSEEKLIEAQRIEQRTRYDLEMMAEMGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS L+ R G P L ++ P+D LL DESHVT+PQ+ GMY GD RK TL + Sbjct: 306 GVENYSGPLSLRERGATPYCLLDFFPDDWLLVADESHVTLPQVRGMYNGDRARKETLVNH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I VSATPG +EL + +VEQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLQFNEFEEKIHQAIYVSATPGDYELARTDK-VVEQIIRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + +R Q++ + EI ++ R+L+T LT +M+E+LT YL E I+V Y+HSE+KTLE Sbjct: 425 LHPSRGQIDHLVGEIYKRIEKNERVLVTTLTIKMSEELTNYLKELGIKVAYLHSEIKTLE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEIIRDLR+G +DVLVGINLLREGLDIPE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 485 RIEIIRDLRVGTYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + +VILYAD +T S+Q AI+ET+RRRE Q N++H I P ++++ + +VI Sbjct: 545 NADGRVILYADKMTGSMQRAIEETSRRREIQENFNEEHGIIPMTIRKDVRDVI------- 597 Query: 741 AATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 AT + +A+ +S+K + + L K+M AA L+FE AA +RD + LK Sbjct: 598 RATEVVEKEAKYDKKMSRKDKEKLMAKLEKEMKEAAKALDFETAATLRDAMLELK 652 >gi|325285016|ref|YP_004260806.1| UvrABC system protein B [Cellulophaga lytica DSM 7489] gi|324320470|gb|ADY27935.1| UvrABC system protein B [Cellulophaga lytica DSM 7489] Length = 661 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/662 (50%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L+KG++ EK Q LLGVTGSGKTFT+A V+E +Q+P +V+A Sbjct: 3 FKVVSKFEPTGDQPQAIKELVKGVNEGEKHQTLLGVTGSGKTFTVANVVEKVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T T+IEK+ SINE I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTTGTFIEKDLSINEDIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL R D IV++SVSC+YGIG+ + + ++ +K + + + L LV+ Y R Sbjct: 123 SATSSLLSGRRDVIVIASVSCLYGIGNPVEFQKNVISIKRDQVISRTKFLHQLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G FRV GD +++FPS+ D A+R+ FG++IEEI F PL + + E + I Sbjct: 183 TTEDFRNGNFRVKGDVVDVFPSY-ADHAFRIHFFGDEIEEIEAFDPLHNKVLEVYENLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+ ++ ++ ++ G+ LEA+RLE+R T+DLEM+ G C Sbjct: 242 YPANMFVTSPDILQNAIHAIQADMVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPDDYLMVIDESHVTVPQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ ++ I VSATP +EL+ G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMIQNQVIHVSATPADYELQLSGGVYVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + Q++D+ +EI+L ++ R L+T LTKRMAE+L +YL ++R RY+HS+V TL Sbjct: 422 EIRPSLNQIDDLVEEIHLRIEKDERTLVTTLTKRMAEELAKYLDRISVRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN K I+YAD IT S+Q IDET RRE+Q+ +N KHN P ++ + +D L + Sbjct: 542 RNVNGKAIMYADKITASMQKTIDETNYRRERQIAYNTKHNKKPMALNKS----LDSALSQ 597 Query: 740 DAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +T + + L+ + ++ RK M AA L+F EAA++RDEIK Sbjct: 598 NSVSTYHFEKEEARAAEPDMAYLTTDQKDKMIREKRKAMEKAAKELDFMEAAKLRDEIKA 657 Query: 793 LK 794 L+ Sbjct: 658 LQ 659 >gi|108804843|ref|YP_644780.1| excinuclease ABC subunit B [Rubrobacter xylanophilus DSM 9941] gi|108766086|gb|ABG04968.1| Excinuclease ABC subunit B [Rubrobacter xylanophilus DSM 9941] Length = 625 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/623 (54%), Positives = 449/623 (72%), Gaps = 10/623 (1%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 +TGSGKT TMA+VIE + RPA+V+A NK LAAQL SEF FFP+NAVEYFVSYYDYYQPE Sbjct: 1 MTGSGKTHTMARVIEKVGRPALVIAHNKTLAAQLASEFSEFFPNNAVEYFVSYYDYYQPE 60 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 AYVP+TDT+IEK++ INE IDR+RHSAT +L R D IVV+SVS IYG+GS E Y Q +V Sbjct: 61 AYVPQTDTFIEKDAQINEDIDRLRHSATSALFTRRDVIVVASVSAIYGLGSPEEYRQKMV 120 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 L+ G + ++L LV+ QY R D + RG FRV GD +E+ P++ +D +R+S FG+ Sbjct: 121 LLERGGFYDLDDVLRDLVRIQYTRNDYQLSRGNFRVRGDVLEVHPAY-QDTFYRLSFFGD 179 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 ++E I E P+TG+ +R E++ +Y +H+VT L A++ I+ EL+ R ELE+EG+ Sbjct: 180 ELEGIMEVDPVTGEVLREPESLTVYPATHFVTGEERLRRAIEGIEAELEERYAELEREGK 239 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 +LEA RL QR YDLEML G C IENYSR+L GR PG P TL +Y PED + FVDE Sbjct: 240 MLEAYRLRQRTQYDLEMLRELGYCSGIENYSRHLDGRPPGSTPYTLLDYFPEDYVTFVDE 299 Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 SH+T+PQI GMY GD RK TL E+GFRLPS +DNRPLR+EE+ + VSATPG + Sbjct: 300 SHITLPQIRGMYNGDRSRKETLVEHGFRLPSALDNRPLRWEEFLLKTNQLVFVSATPGPY 359 Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 ELE + + VEQIIRPTGLVDP VE+R R Q++D+ +E++ ++ R+L+T LT +MA Sbjct: 360 ELENSERV-VEQIIRPTGLVDPEVEVRPTRNQIDDLMNEVHRRVERNERVLITTLTIKMA 418 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDLT+YL E ++ RYMH+ ++TL+RI+IIR LR G+FDVLVGINLLREGLD+PE LVA Sbjct: 419 EDLTDYLLEHGVKARYMHANIETLDRIQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVA 478 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDADKEGFLR + +LIQTIGRAARN N +VI+YADT T++++ AI ET RRR Q+E+N Sbjct: 479 ILDADKEGFLRGERALIQTIGRAARNANGRVIMYADTETEAMRAAIRETNRRRSIQMEYN 538 Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS----LRKQM 771 ++H I P+++++ + + ILL A ++ + + L+ L+ +M Sbjct: 539 RRHGIEPRTIRKGVSD----ILLAAEARGLYRAGRRRRAAEAPRDPGELRDLIARLQAEM 594 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 AA+ L FE AA++RDEIK L+ Sbjct: 595 MEAAEELKFEYAAKLRDEIKDLE 617 >gi|302338834|ref|YP_003804040.1| excinuclease ABC subunit B [Spirochaeta smaragdinae DSM 11293] gi|301636019|gb|ADK81446.1| excinuclease ABC, B subunit [Spirochaeta smaragdinae DSM 11293] Length = 666 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/666 (51%), Positives = 459/666 (68%), Gaps = 23/666 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQ AAI L G+ + + Q L GVTGSGKTFTMA +I Q P +V++ Sbjct: 7 FKLVSDYAPSGDQGAAIDALADGLSNGLRYQTLKGVTGSGKTFTMANIIRRAQLPTLVLS 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP+NAVEYFVSYYDYYQPEAYVP D YIEK+SSINE+IDR+R Sbjct: 67 HNKTLAAQLYRELQGFFPNNAVEYFVSYYDYYQPEAYVPSKDLYIEKDSSINEEIDRLRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER+D IVVS+VSCIYG+GS +Y M V+ +G+S+ L++ QY R Sbjct: 127 SATSSLMERSDVIVVSTVSCIYGLGSPVAYRDMRVKATVGESLNIASFARDLIRLQYDRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFR+ GD +E+FP++L++ A+R+ + +++ I +PLTG I +++++IY Sbjct: 187 DAVLERGTFRIRGDVLEVFPAYLQE-AFRMELDWDEVVRIRRIHPLTGDTIEELDSVQIY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P ++TA++ I+ ELK +L E G+LLEAQRL R YDLEML+ G C Sbjct: 246 PAKHFVMPEEQVHTALERIRRELKDQLEYFEHRGKLLEAQRLRGRTEYDLEMLQEMGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS L+GR G+ P L +Y PE L F+DESHVT+PQ+ MY GD RK L E+ Sbjct: 306 GIENYSAPLSGRGEGQRPAVLLDYFPEKFLTFIDESHVTLPQVGAMYEGDRSRKMNLVEH 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL + E+ L I VSATPG E + + +VEQIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLFYAEFEELVDRVIYVSATPGKLEKRRSER-LVEQIIRPTGLLDPELE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q+ED+Y EI + R L+T LTK+M+EDLT+YL ++VRY+HSE++T+E Sbjct: 425 VRPTKGQIEDLYAEIRKRVECNERTLVTTLTKKMSEDLTDYLSGLGLKVRYLHSEIETIE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+RDLRLG FDVL+GINLLREGLD+PE L+AILDADK GFLRS TSLIQTIGRAAR Sbjct: 485 RVEILRDLRLGTFDVLIGINLLREGLDLPEVSLIAILDADKIGFLRSATSLIQTIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733 N + KVI+YAD I+ +++ AI ET RRR Q +N++H I P ++K+ + +++ Sbjct: 545 NEHGKVIMYADRISDAMKEAIGETERRRAIQEAYNEEHGITPTTIKKAVQDILVRKKEEA 604 Query: 734 -----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + I + A NI I A++ K ++ L + M A NL FE+AA +RD Sbjct: 605 KKGETETIEMVKAG-YNILIPAER--------KRLIRHLEEMMLEHAKNLEFEQAAVVRD 655 Query: 789 EIKRLK 794 EI RLK Sbjct: 656 EIGRLK 661 >gi|294101779|ref|YP_003553637.1| excinuclease ABC, B subunit [Aminobacterium colombiense DSM 12261] gi|293616759|gb|ADE56913.1| excinuclease ABC, B subunit [Aminobacterium colombiense DSM 12261] Length = 682 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/648 (50%), Positives = 450/648 (69%), Gaps = 6/648 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ D+ PSGDQP AI +L++ + + + Q LLGVTGSGKTFT+A V+ RP +V+A Sbjct: 5 FNLKADWGPSGDQPEAIEKLVESLKNGTRFQTLLGVTGSGKTFTVANVLAQFDRPVLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFPHNAV YFVSYYDYYQPEAY+P +DTYIEK++SIN++I+++R Sbjct: 65 HNKTLAAQLYTEFKTFFPHNAVHYFVSYYDYYQPEAYIPSSDTYIEKDASINDRIEKLRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT++L+ER D IVV+SVSCIYG+G E Y ++I +G+ +++ + L+ Y R Sbjct: 125 AATKALVERRDVIVVASVSCIYGLGKKEMYEEVIFPFAVGEKWDRRGFMERLIDNYYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + G FR GD +EI+PS+ E A RV+ F ++IE I E P++G ++ + I+ Sbjct: 185 DMLLEAGKFRARGDVLEIYPSYSE-TALRVAFFDDEIERIDEIDPVSGHTLKQLPKASIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT R ++ AM I++EL +L L+K+G+LLEAQRLE R YD+EML G C Sbjct: 244 PAQHYVTSRDAIDKAMGQIQQELDEQLHLLKKQGKLLEAQRLEMRTRYDMEMLAEVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL GRNPGEPP TL ++ P+D ++ +DESH+T+PQ+ GMY GD RK TL E Sbjct: 304 GIENYSRYLDGRNPGEPPGTLLDFFPDDFIMVIDESHITLPQVRGMYNGDRARKTTLVEN 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL + E+ I +SATPG WE E + EQIIRPTG+VDP V Sbjct: 364 GFRLPSCLDNRPLNWREFKKYLRQVIFISATPGDWERE-VSTCVAEQIIRPTGVVDPEVV 422 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A QV+D+ D + +G R L+T LTK+ +EDL EYL + +V+Y+HSE+ E Sbjct: 423 VSPATGQVDDLVDRLRGITARGERALVTTLTKKSSEDLAEYLADLQFKVKYIHSELNAFE 482 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IRDLR G+ +LVGINLLREG+D+PE LVAILDAD+EGFLRS SLIQ +GRAAR Sbjct: 483 RAELIRDLRSGEVSILVGINLLREGMDLPEVSLVAILDADREGFLRSHRSLIQIMGRAAR 542 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +V+LYAD T+SI+ ++ ET RRRE Q+ N+KH I PQ++ + + +L E+ Sbjct: 543 NTRGQVVLYADVETESIRTSVQETRRRREIQMLFNEKHGIIPQTISKTVQN----LLPEE 598 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + + +++++ +K+ + L + M A + L+FE+AA+IRD Sbjct: 599 FTSDAVKLESRRGKRTKEVQEYTHSDLERLMWEAVEKLDFEKAAQIRD 646 >gi|291297353|ref|YP_003508751.1| excinuclease ABC subunit B [Meiothermus ruber DSM 1279] gi|290472312|gb|ADD29731.1| excinuclease ABC, B subunit [Meiothermus ruber DSM 1279] Length = 673 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/648 (51%), Positives = 454/648 (70%), Gaps = 9/648 (1%) Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207 P GDQP AIA L + + E+ LLG TG+GKT TMAKVIEA+QRPA+VMAPNK+LAA Sbjct: 15 EPKGDQPQAIAALTEALRDGERFVTLLGATGTGKTVTMAKVIEALQRPALVMAPNKVLAA 74 Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267 QL +EF+ FP NAVE+F+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 75 QLAAEFRELFPENAVEFFISYYDYYQPEAYVPGRDLYIEKDASINPEIERLRHSTTRSLL 134 Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 R D IVV+SVS IYG+GS E Y M + +++G ++ L+ LV QY+R D+ + G Sbjct: 135 TRRDVIVVASVSAIYGLGSPEDYKNMSLVVEVGQDCPRERLIERLVDLQYERGDLQLEAG 194 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 FR G+ +E++P++ E R+ +FG+ I+ ++ +P+TG++++++ + +HY T Sbjct: 195 RFRARGEVLEVWPAY-EQEPIRIELFGDTIDRVTVVHPVTGERLKDLPGFVLLGATHYAT 253 Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447 P L A+ I+ EL+ RL E EG+LLEAQRL++R YDLEMLE G+C IENYSR Sbjct: 254 PEWRLKEAIPEIRRELEERLKVFEAEGKLLEAQRLKERTLYDLEMLEVMGTCPGIENYSR 313 Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507 +L+G+ PGE P TL +Y PED L+ +DESHV++PQ+ GMY GD+ RK TL +YGFRLPS Sbjct: 314 FLSGKTPGEAPYTLLDYFPEDYLVLLDESHVSVPQLRGMYNGDYIRKKTLVDYGFRLPSA 373 Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 +DNRPL+F E+ + VSATPG +ELE G +VEQIIRPTGL+DP V ++ Q Sbjct: 374 LDNRPLKFNEFLERVGQVVFVSATPGPYELE-VSGRVVEQIIRPTGLLDPRVTVKPTTGQ 432 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 +ED+ I A +G R L+TVLT RMAE+LT YL E +R RY+H E+ ER ++RD Sbjct: 433 IEDLMGAIRTRAARGERTLVTVLTVRMAEELTAYLVEHGVRARYLHHELDAFERQALLRD 492 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LRLG FD LVGINLLREGLD+PE LVAILDADK+GFLRS+ SLIQTIGRAARNV +V Sbjct: 493 LRLGYFDALVGINLLREGLDLPEVSLVAILDADKQGFLRSERSLIQTIGRAARNVGGEVF 552 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 LYADT++ +++ AI+ET RRR Q +N +H I P +V++ + +++ P E A + Sbjct: 553 LYADTVSDAMKAAIEETNRRRALQEAYNLEHGITPATVQKSVRKLVKPEDYEAEAAEAVL 612 Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 D L ++ + +M A++ L+FE+AA +RD+++ L++ Sbjct: 613 DDPALLQSLLEQLET-------EMWAASEALDFEKAASLRDQMRSLEA 653 >gi|28493262|ref|NP_787423.1| excinuclease ABC subunit B [Tropheryma whipplei str. Twist] gi|28476303|gb|AAO44392.1| excinuclease ABC subunit B [Tropheryma whipplei str. Twist] Length = 677 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/673 (49%), Positives = 464/673 (68%), Gaps = 24/673 (3%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 N H K +F++ +Y PSGDQP AI +L I S E +LLG TG+GK+ T+A +IE Sbjct: 4 NLHPK---YFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGKSATIAWLIEK 60 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + RP +++A NK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++S+ Sbjct: 61 LARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDYYQPEAYVPKTDTFIEKDASV 120 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N +++R+RH AT SLL R D IVV++VSCIYG+G+ Y + +L++G + Q+ LL Sbjct: 121 NSEVERLRHRATTSLLTRRDVIVVATVSCIYGLGAPSEYLKAGFRLEVGQKISQRVLLER 180 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 + QY R D+G RG FRV GD+IEI P + E+ R+ M+G++IE + +P+TG + Sbjct: 181 FTQLQYNRNDVGFERGNFRVRGDTIEIIPVY-EEYTVRIEMWGDEIERVLCLHPVTGNVL 239 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + I+ SHYVT L A+ I++EL+ RL ++ LLEAQRLE R YD+E Sbjct: 240 SEQRGVLIFPASHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIE 299 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 ++E G C IENYSR++ GR PGEPP L +Y +D L +DESHVT+PQI M+ GDF Sbjct: 300 LMEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQIGSMHAGDF 359 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L E GFRLPS +DNRPL F+E+ I +SATPG +EL + G +VEQIIRP Sbjct: 360 SRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATPGKYELSKSDG-VVEQIIRP 418 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGLVDP + ++ + Q++D+ +EI R+L+T LTKRMAE+LT++L E + V Y Sbjct: 419 TGLVDPKITVKPIKGQIDDLLEEIRKRKLLSERVLVTTLTKRMAEELTDFLSEAGVNVSY 478 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS++ TL R+E++ LR+G+ DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 479 LHSDIDTLHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSF 538 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAAR+V+ +V +YAD +T+S+Q +IDET RRR Q ++N+K + P +K+ + + Sbjct: 539 IQTIGRAARHVSGEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSD 598 Query: 732 V----------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 + ID +L+ + + ID +Q+ K+H+KSL +M++AA++L FE Sbjct: 599 ITEVLSRPSRKIDCTILD--SLPDPKIDGKQI-------KSHIKSLEAKMYMAAESLMFE 649 Query: 782 EAARIRDEIKRLK 794 EAA +RDEI+ LK Sbjct: 650 EAAELRDEIQSLK 662 >gi|256419588|ref|YP_003120241.1| excinuclease ABC, B subunit [Chitinophaga pinensis DSM 2588] gi|256034496|gb|ACU58040.1| excinuclease ABC, B subunit [Chitinophaga pinensis DSM 2588] Length = 684 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/672 (51%), Positives = 459/672 (68%), Gaps = 24/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q Y P+GDQP AI QL++GI Q LLGVTGSGKTFT+A VI+ +QRP +V+ Sbjct: 3 FKIQAPYAPAGDQPTAIRQLVEGIQDGAPAQTLLGVTGSGKTFTVANVIQQVQRPTLVLT 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLY EF+ FFP NAVEYFVSYYDYYQPEAY+P +DTYIEK+ SINE++D++R Sbjct: 63 HNKTLVAQLYGEFRQFFPDNAVEYFVSYYDYYQPEAYMPVSDTYIEKDLSINEELDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVV+SVSCIYG+G+ Y I++L G ++ + +L LV Y R Sbjct: 123 RATTSLLSGRRDIIVVASVSCIYGMGNPTDYENGIIRLHKGQTIGRNTVLHGLVNSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RG FRV GD+++I ++ D +R++ FG++IEEI F G++I +E I Sbjct: 183 TTGDFNRGNFRVQGDTVDINLPYV-DFGYRITFFGDEIEEIESFDVQNGKRIGTMENAAI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + Y+ P+ + I++EL ++ G+ LEAQRL +R+ YDLEM+ G C Sbjct: 242 FPANLYMAPKDMMAQITFEIQDELMAQVEYFRSIGKHLEAQRLSERVNYDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L R PG P L +Y P+D LL +DESHVTIPQI GMY GD RK TL + Sbjct: 302 SGIENYSRFLDRRAPGTRPFCLLDYFPKDFLLVIDESHVTIPQIGGMYGGDRSRKLTLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS MDNRPL F E+ L I VSATPG +EL Q +G++VEQ++RPTGL++PP+ Sbjct: 362 FGFRLPSAMDNRPLNFYEFENLVNQAIFVSATPGEYELRQTEGVVVEQVVRPTGLLEPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + QV+D+ DEI+ +G R+L+T LTKRMAE++ +YL+ N++ RY+HSEV TL Sbjct: 422 EIRPSVNQVDDLLDEIDKRVLKGGRVLVTTLTKRMAEEMDKYLHRINVKSRYIHSEVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI+RDLRLG DVLVG+NLLREGLD+PE LVAILDADKEGFLR + SL QT GRAA Sbjct: 482 ERIEILRDLRLGNIDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRDERSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIM---EVI 733 RN VI YAD IT S+Q IDET RRREKQ+ +N HNI P++V KE+I+ V+ Sbjct: 542 RNAEGLVIFYADKITDSMQRTIDETDRRREKQVAYNTAHNITPRTVLKSKEQILGQTSVL 601 Query: 734 D--------PILLEDAATTNISID----AQQLSLSKK---KGKAHLKSLRKQMHLAADNL 778 + P + D + ++ D A+Q +++ K + + + ++K M AA +L Sbjct: 602 EIKQFDENSPYAVHDEVSL-VAEDAMGYAKQEAVTAKTIPQMEKAISKVKKDMEKAAKDL 660 Query: 779 NFEEAARIRDEI 790 +F EAAR+RD++ Sbjct: 661 DFMEAARLRDQM 672 >gi|300871666|ref|YP_003786539.1| excinuclease ABC subunit B [Brachyspira pilosicoli 95/1000] gi|300689367|gb|ADK32038.1| excinuclease ABC, B subunit [Brachyspira pilosicoli 95/1000] Length = 679 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/667 (50%), Positives = 467/667 (70%), Gaps = 24/667 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ PSGDQ AI L+KG+ ++ K Q LLGVT SGKTFT+A VIE RP +VM+ Sbjct: 4 FKIESNFKPSGDQITAIDSLVKGLENKNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP D YI+K++S+N++IDR+R Sbjct: 64 HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++ ++ E++ LV QY+R Sbjct: 124 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYIAIEKDGEYDRDEIIEKLVSIQYERV 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R F+V GD++EI ++ ++V RV FG+ +E I + P+T QKI + + IY Sbjct: 184 KDVLERARFKVMGDTLEIMSAYSDEV-IRVEFFGDTVERIIKINPITRQKIAEQDRVVIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT L +K I+EEL+ + + + EG+L+EA+R+ R YDLEML G C Sbjct: 243 PAKHFVTGGDKLAAGIKLIEEELEEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR G+ P L +Y P+D L +DESHV++PQI GM+ GD RK TL +Y Sbjct: 303 GIENYSRPLSGRKEGDRPACLIDYFPKDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ L TI +SATP +EL++ + VEQIIRPTGL+DP +E Sbjct: 363 GFRLPSALDNRPLFFEEFESLTNDTIYISATPAEYELKKSSQV-VEQIIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + Q++ + +EI RI +T LTK+MAEDLT+YL E +R RY+HS+++T+E Sbjct: 422 VYPINGQIDRILEEIKKTVSNNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE L+ ILDADK GFLR+ T+LIQTIGRAAR Sbjct: 482 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI++ADTI+ ++++AI+ET RRR+ Q+++NK+HNI P+++ +KI ++I+ E+ Sbjct: 542 NANGRVIMFADTISDAMKVAIEETERRRKIQMDYNKEHNITPKTIIKKIQDIIER---EE 598 Query: 741 AATTN-------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 T+ + ID +Q K ++K L K+M A+D+L FE+A IR Sbjct: 599 KVETSYELHFDFRRFNERVKIDPEQ------KSDDYIKELEKEMKKASDSLEFEKAIEIR 652 Query: 788 DEIKRLK 794 ++I +LK Sbjct: 653 EKINQLK 659 >gi|28572626|ref|NP_789406.1| excinuclease ABC subunit B [Tropheryma whipplei TW08/27] gi|81839344|sp|Q83NI7|UVRB_TROW8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|28410758|emb|CAD67144.1| excinuclease ABC subunit B [Tropheryma whipplei TW08/27] Length = 677 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/673 (49%), Positives = 464/673 (68%), Gaps = 24/673 (3%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 N H K +F++ +Y PSGDQP AI +L I S E +LLG TG+GK+ T+A +IE Sbjct: 4 NLHPK---YFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGKSATIAWLIEK 60 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + RP +++A NK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++S+ Sbjct: 61 LARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDYYQPEAYVPKTDTFIEKDASV 120 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N +++R+RH AT SLL R D IVV++VSCIYG+G+ Y + +L++G + Q+ LL Sbjct: 121 NSEVERLRHRATTSLLTRRDVIVVATVSCIYGLGAPSEYLKAGFRLEVGQKISQRVLLER 180 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 + QY R D+G RG FRV GD+IEI P + E+ R+ M+G++IE + +P+TG + Sbjct: 181 FTQLQYNRNDVGFERGNFRVRGDTIEIIPVY-EEYTVRIEMWGDEIERVLCLHPVTGNLL 239 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + I+ SHYVT L A+ I++EL+ RL ++ LLEAQRLE R YD+E Sbjct: 240 SEQRGVLIFPASHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIE 299 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 ++E G C IENYSR++ GR PGEPP L +Y +D L +DESHVT+PQI M+ GDF Sbjct: 300 LMEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQIGSMHAGDF 359 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L E GFRLPS +DNRPL F+E+ I +SATPG +EL + G +VEQIIRP Sbjct: 360 SRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATPGKYELSKSDG-VVEQIIRP 418 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGLVDP + ++ + Q++D+ +EI R+L+T LTKRMAE+LT++L E + V Y Sbjct: 419 TGLVDPKITVKPIKGQIDDLLEEIRKRKLLSERVLVTTLTKRMAEELTDFLSEAGVNVSY 478 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HS++ TL R+E++ LR+G+ DVLVGINLLREGLD+PE LVAILDADKEGFLRS TS Sbjct: 479 LHSDIDTLHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSF 538 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAAR+V+ +V +YAD +T+S+Q +IDET RRR Q ++N+K + P +K+ + + Sbjct: 539 IQTIGRAARHVSGEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSD 598 Query: 732 V----------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 + ID +L+ + + ID +Q+ K+H+KSL +M++AA++L FE Sbjct: 599 ITEVLSRPSRKIDCTILD--SLPDPKIDGKQI-------KSHIKSLEAKMYMAAESLMFE 649 Query: 782 EAARIRDEIKRLK 794 EAA +RDEI+ LK Sbjct: 650 EAAELRDEIQSLK 662 >gi|325955516|ref|YP_004239176.1| UvrABC system protein B [Weeksella virosa DSM 16922] gi|323438134|gb|ADX68598.1| UvrABC system protein B [Weeksella virosa DSM 16922] Length = 662 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/667 (50%), Positives = 467/667 (70%), Gaps = 21/667 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + P+GDQP AI +L +G+ +K Q LLGVTGSGKTFT+A V+ +QRP +V+A Sbjct: 3 FEIKSTFEPTGDQPQAIKKLAQGVLDGDKYQTLLGVTGSGKTFTIANVVTEIQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NA+EYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYMEFKEFFPDNAIEYFVSYYDYYQPEAYLPSSGTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D +VV+SVSC+YGIG+ + + ++ ++ G + + LL LV+ Y R Sbjct: 123 STTSSLLSGRRDILVVASVSCLYGIGNPTEFHKNVISIEQGQIISRTHLLHKLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +RG FR+ GD+I+I+P++ +D R+S FG+++EEIS F TG+ I +E I I Sbjct: 183 TEGAFLRGNFRIKGDTIDIYPAYADD-GIRLSYFGDEVEEISIFDIETGKTITKLEKINI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + TLN A+ I+ +L ++ + G+ LEA+RL++R +DLEM++ G C Sbjct: 242 YPANLFVTSKETLNDAIHNIQLDLGKQVDYFIEIGKTLEAKRLKERTEFDLEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P+D L+ +DESHVT+ Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +ELE+ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFESLQNQVIYVSATPAKYELEKSEGVVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EI R+L+T LTKRMAE+LT++L + IR Y+HS++ TL Sbjct: 422 EVRPSQNQMDDLMEEIQKRVDLDERVLVTTLTKRMAEELTKFLVKYGIRTNYIHSDIDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVKIMADLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732 RNVN I+YAD IT S+Q IDET RRRE Q ++N +H PQ + +KI+ + Sbjct: 542 RNVNGLAIMYADKITDSMQQTIDETNRRREIQHQYNIEHGKTPQPLHKKIISLNKQAESF 601 Query: 733 -IDPI----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 ++P L+ +AA + +L S++K + ++ L K M AA NL+F +AA +R Sbjct: 602 ELNPYEQKHLIAEAA------ENTELYTSEEK-QQQIEKLTKAMEKAAKNLDFIQAASLR 654 Query: 788 DEIKRLK 794 D+I LK Sbjct: 655 DQINALK 661 >gi|289522996|ref|ZP_06439850.1| excinuclease ABC subunit B [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503539|gb|EFD24703.1| excinuclease ABC subunit B [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 674 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 449/661 (67%), Gaps = 8/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI +L G+ + Q LLGVTGSGKTFT+A VIE +QRP +V+A Sbjct: 11 FELVAPWKPAGDQPLAIEKLALGLKQGTRYQTLLGVTGSGKTFTIANVIEKIQRPVLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP+N V YFVSYYDYYQPEAY+P D YIEK++SINE+I+++R Sbjct: 71 HNKTLAAQLYSEFKDFFPNNEVHYFVSYYDYYQPEAYLPSQDIYIEKDASINERIEKLRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T++LLER D IVV+SVSCIYG+G +SY + I + +GD++ +K+ L+ Y+R Sbjct: 131 ATTKALLERRDVIVVASVSCIYGLGRRKSYEEAIFRFSVGDNINRKDFFKRLLDNYYERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + GTFR GD +E++P++ D A RV F ++IE I E PL G+ I + ++ Sbjct: 191 DTTLEPGTFRGRGDVVEVYPAY-SDTALRVFFFDDEIERIEEIDPLWGKTIVEKDCAAVF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT ++ A+K I+EEL R+ EL+ EG+LLEAQRL R YD++ML G C Sbjct: 250 PAQHYVTTHDSIKKALKAIEEELDFRVAELQSEGKLLEAQRLSTRTRYDMQMLSEVGYCS 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L GRNPGEPP TL ++ P D ++ +DESH+T+PQI GMY GD RK TL E+ Sbjct: 310 GIENYSRHLDGRNPGEPPGTLLDFFPGDFVMVIDESHITVPQIRGMYNGDVSRKKTLVEH 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPLR+EE+ I VSATPG +EL + +VE ++RPTG++DP VE Sbjct: 370 GFRLPSCLDNRPLRWEEFEEYMKQVIFVSATPGDYELSTSEQ-VVELLVRPTGILDPKVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A+ Q++D+ + ++ R+L+ LTKR AEDL EYL +V+Y+HSE T E Sbjct: 429 VVPAKHQLDDLLYRLKGCLKENKRVLVNTLTKRSAEDLAEYLAGLGYKVKYIHSEFDTFE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E++RDLR+G D+LVG+NLLREGLD+PE LVAILDAD+EGFLRS S+IQ IGRAAR Sbjct: 489 RAELLRDLRIGTIDILVGVNLLREGLDLPEVSLVAILDADREGFLRSSRSIIQMIGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 + V+LYAD +T+SI++A+ ET RRR+ Q N +H I P+S+ + I+ ++ LLE Sbjct: 549 HAAGMVVLYADEMTESIKVAVSETERRRKIQEAFNIEHGIEPKSIVKPIVHLLPEELLEK 608 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 + + L+ L + M A LNFEEAAR+RD I +K + Sbjct: 609 REGEG------DHGAVPRPSEVSLEELERMMWDAVAKLNFEEAARLRDLISDIKGGRITR 662 Query: 801 G 801 G Sbjct: 663 G 663 >gi|319935310|ref|ZP_08009748.1| UvrABC system protein B [Coprobacillus sp. 29_1] gi|319809718|gb|EFW06119.1| UvrABC system protein B [Coprobacillus sp. 29_1] Length = 657 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/655 (52%), Positives = 463/655 (70%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI QL++GI + +K Q+LLG TG+GKTFT++ VI + +P +V+A Sbjct: 4 FKLVSEYSPMGDQPTAIKQLVEGIRAGQKEQVLLGGTGTGKTFTVSNVIAEVNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP N VEYFVS +D+YQPEAY+P++D YI+K + N +I+ +R Sbjct: 64 HNKTLAGQLYSELKEFFPENRVEYFVSNFDFYQPEAYIPKSDVYIDKTAQTNYEIEMLRS 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A SLLER D IVV+SV+ IYG+G+ E Y +MI L++G +++KELL+ LV +QY+R Sbjct: 124 AAMNSLLERRDTIVVASVASIYGLGNPEQYREMIFSLRVGQEIDRKELLTYLVDRQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +GTFRV GD IEI P H E R+ +FG+++E ISE PLTG+ + + +T IY Sbjct: 184 DIEQSKGTFRVRGDVIEIVPGHTESWLIRIELFGDEVERISEADPLTGKTLGSYKTYTIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 YVT + + A I EELK RL E+ + LE +RL+QR +D+EML G C Sbjct: 244 PAYGYVTRKDQMLKACDTIAEELKERLKYFEEGMKPLEYERLDQRTRHDIEMLREVGMCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+ P TL +Y P+D L+ VDESHV +PQ+ GM+ GD RK TL EY Sbjct: 304 GIENYSRHIDGRQAGQRPYTLIDYFPDDFLMIVDESHVMLPQVRGMFNGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + I VSATPG +ELE+ G EQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELERTNGTFAEQIIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R ++ Q++D+ EIN ++ R+L+T LTKRMAEDL+ YL E ++V Y+HS+ KTLE Sbjct: 424 VRPSKNQIDDIISEINDRIEKNERVLITTLTKRMAEDLSAYLKEMGMKVAYLHSDTKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLRLGK+DVL+GINLLREGLD+PE LV ILDADKEGFLRS+ SLIQTIGRAAR Sbjct: 484 RTEILRDLRLGKYDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSQRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + KVI+Y D +T S++ AIDET+RRRE Q E+N++H+I PQ++ ++I ++I D Sbjct: 544 NAHGKVIMYGDNMTDSMKKAIDETSRRREIQEEYNREHHITPQTIHKEIRDLIQGKETID 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 AT S+ + KK K + L K+M AA L+FE A +RD I LK Sbjct: 604 EAT---SLLKKGKKADKKAKKKLIDDLEKEMKQAAKVLDFERAMELRDMIMELKG 655 >gi|254457128|ref|ZP_05070556.1| excinuclease ABC, B subunit [Campylobacterales bacterium GD 1] gi|207085920|gb|EDZ63204.1| excinuclease ABC, B subunit [Campylobacterales bacterium GD 1] Length = 660 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/657 (52%), Positives = 456/657 (69%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L + I + Q L GVTGSGKT+TMAKVIE ++ P I+M Sbjct: 7 FKVNSPYQPAGDQPTAIKVLSESILKGNRYQALEGVTGSGKTYTMAKVIENVKMPTIIMT 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP+N +EYFVSYYDYYQPEAY+PR D +IEK+S+IN++++RMR Sbjct: 67 HNKTLAAQLYSEFREFFPNNHIEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S+T +LL +D IV++SVS YG+G E Y M+ L++GD + QK+LL LV+ Y R Sbjct: 127 SSTANLLSYDDVIVIASVSANYGLGDPEEYLNMVQALEVGDEIPQKKLLLRLVEMGYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RV G+S++I+P + E A R+ FG++IE I F + +K+ + IY Sbjct: 187 DTYFDSGHIRVNGESLDIYPPYFEQEAIRIEFFGDEIEAIYTFDIIDNKKLEEHKKFTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S + + + A+K I+EEL RL + G+LLE QRL+QR+ +DLEML+TTG C+ Sbjct: 247 ATSQFSVSQEKMAVAIKRIEEELDERLAYFQSAGKLLEHQRLKQRVEFDLEMLQTTGMCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENYSR LT + PGE P TL +Y +D L+ VDESHV++PQ GMY GD RK L Sbjct: 307 GVENYSRLLTNKKPGEAPFTLLDYFALNHKDYLVIVDESHVSLPQYRGMYAGDRARKEVL 366 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL+ +E+ P + VSATP +ELE + QIIRPTGL+DP Sbjct: 367 VDYGFRLPSALDNRPLKADEYINKAPHYLFVSATPAEYELEMS-SVTAHQIIRPTGLLDP 425 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI+ + QVED++DEI + A + RIL+TVLTK+MAE LT+YL + I+V+YMHS++ Sbjct: 426 ILEIKPSDNQVEDIHDEIKIIAAKNERILITVLTKKMAEALTKYLADLGIKVQYMHSDID 485 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ER +IIR LRLG+FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+T+LIQTIGR Sbjct: 486 TIERNQIIRALRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETALIQTIGR 545 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 ARN N +VILYA+ ITKS+Q AID TT RRE Q +NK++ I P + K+ + Sbjct: 546 GARNSNGRVILYANKITKSMQKAIDTTTSRREIQEAYNKENGITPTTTIRKLDANLKVED 605 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D + +D ++ S+K K K L +M AA LNFEEAAR+RDEI ++K Sbjct: 606 HGDIYQKHKKMD--KMPASEK--KVITKELMLKMKQAAKELNFEEAARLRDEIMKIK 658 >gi|302325697|gb|ADL24898.1| UvrABC system protein B [Fibrobacter succinogenes subsp. succinogenes S85] Length = 706 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/692 (49%), Positives = 466/692 (67%), Gaps = 38/692 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y +GDQP AI +L +G + E+ Q LLGVTGSGKTFTMA VI+ + +P +++ Sbjct: 16 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 75 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDY+QPEAY+P TDT+IEK++SIN++ID++R Sbjct: 76 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 135 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R D I+V+SVSCIYG+GS Y ++V++K GD ++ ++L LV QY R Sbjct: 136 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG+FRV GD IE+ PS+ ED R+ +FG++++ + F +TG+ I+ VE + I Sbjct: 196 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 254 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT ++ I++EL RL EL+KEG++LE+ RL R YD+EML TG C Sbjct: 255 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R PG P TL +Y +D LL +DESHV+IPQ+ GM GD RK TL +Y Sbjct: 315 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLP +DNRP+ F E+ + P ++ VSATPG +EL++ G++ EQI RPTGL+DP + Sbjct: 375 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 434 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+ + Q++ + I + G R+L+T LTK+MA+DLTE+ E +R +Y+HS++KTL Sbjct: 435 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 494 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER E+IR LR G++DVLVGINLLREGLD+PE +VAILDADKEGFLR+ SLIQT+GRA+ Sbjct: 495 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 554 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDPI 736 RNVN V+L+AD +T+S+Q AIDET RRR Q E NK+H I P+SV KI E +IDP+ Sbjct: 555 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 614 Query: 737 LLEDAATTNISIDAQ-----------QLSLSKKKGK----------------------AH 763 TT+ D + Q S ++K K + Sbjct: 615 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 674 Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L L +QM AA L+FEEAARIRD I+ L + Sbjct: 675 LADLERQMKEAAARLDFEEAARIRDIIRSLDA 706 >gi|313683342|ref|YP_004061080.1| excinuclease ABC subunit b [Sulfuricurvum kujiense DSM 16994] gi|313156202|gb|ADR34880.1| Excinuclease ABC subunit B [Sulfuricurvum kujiense DSM 16994] Length = 657 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/658 (52%), Positives = 458/658 (69%), Gaps = 10/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L GI E+ L GVTGSGKT TMA+VIE +Q P I+M Sbjct: 4 FKVHSPYQPAGDQPVAIEALSSGIKRGERYVALEGVTGSGKTMTMARVIEQVQLPTIIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF++FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R+R Sbjct: 64 HNKTLAAQLYSEFRSFFPENHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL +D IVV+SVS YG+G E Y +M+ + IGD + QK+LL LV+ Y R Sbjct: 124 SATANLLSYDDVIVVASVSANYGLGDPEEYEKMVQVVTIGDEISQKKLLLRLVEMGYARN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G FRV G+ ++I+P + +D A R+ FG+++E ++ F PL + +ETI IY Sbjct: 184 DSYFDGGHFRVNGEVVDIYPPYWQDQALRIEFFGDEVERLALFEPLNNSVVETIETITIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S + + L+ A+K I++EL RL +L+KEG+++EAQRL+QR +DLEML+ TG C+ Sbjct: 244 ATSQFAVGQEKLSRAIKRIEDELGERLAQLDKEGKIVEAQRLKQRCEFDLEMLQATGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+LT + PGE P TL +Y + L+ VDESHV++PQ GM+ GD RK L Sbjct: 304 GIENYSRHLTDKKPGEAPYTLLDYFALHHDKYLIIVDESHVSLPQFRGMFAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL +E+ P + VSATP + E++ I QIIRPTGL+DP Sbjct: 364 VDYGFRLPSALDNRPLMIDEFMNKAPHYMFVSATPAAQEID-ISTTIAHQIIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + I+ + QVED++DEI G R+L+TVLTK+MAE LT+YL + I+V+YMHSE+ Sbjct: 423 IITIKPSENQVEDLHDEIKKTVALGDRVLVTVLTKKMAEALTKYLADLGIKVQYMHSEID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR LR+G FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGR Sbjct: 483 AIERNQIIRGLRVGDFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN + +VILYA IT S++ AI TT RR Q +N+KH I P + K + E + Sbjct: 543 AARNEHGRVILYAQKITGSMERAIKTTTDRRAVQEAYNQKHGITPITTKRSLDENLK--- 599 Query: 738 LEDAATT-NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 LED + N S A+ L +++ K ++ L +M AA L FEEAAR+RDEI +++ Sbjct: 600 LEDPSELYNRSKKAKTLPAAER--KKLIEELNIKMREAAKKLEFEEAARLRDEIAKIR 655 >gi|223041263|ref|ZP_03611510.1| excinuclease ABC, B subunit [Campylobacter rectus RM3267] gi|222877471|gb|EEF12605.1| excinuclease ABC, B subunit [Campylobacter rectus RM3267] Length = 658 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/657 (49%), Positives = 453/657 (68%), Gaps = 7/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ A+A ++ + S K Q LLGVTGSGKTFTMA VI + P ++M Sbjct: 4 FEISSKFSPSEDQARAVANIVASVRSGNKYQTLLGVTGSGKTFTMANVIRELNMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SS+NE+++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D + V+SVS YG+G+ Y M+ L +GD + Q+ LL LV YKR Sbjct: 124 SATASLLSFDDVVCVASVSANYGLGNPSEYQGMVAYLNVGDKINQRALLQKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD ++++P++ D A+R+ FG++IE + L +K +++ +Y Sbjct: 184 DVYFDRGDFRVNGDVVDVYPAYFNDEAFRIEFFGDEIETMYSLDVLENKKRHDLKKFILY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S ++ L A+K I+EEL RL E ++ +L+EAQRL+QR+ +DLEM+ +TG C+ Sbjct: 244 PTSQFIVGENRLKIAIKQIEEELAERLKEFNEQSKLVEAQRLKQRVEFDLEMMSSTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P ++F+Y +D L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFELGGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+F+E+ R + VSATP +E+ G + EQI+RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFDEFINKRAKFLFVSATPNEYEINLSCGHVYEQILRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI+ + QVE ++DE ++ R+L+TVLTK+MAE+L+ Y E I+V+YMHS++ Sbjct: 424 LIEIKDSENQVEILFDEAKKTIERNERVLVTVLTKKMAEELSRYYTELGIKVKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G+FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT+GR Sbjct: 484 AVERNEIIRGLRGGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN +V+++A ITKS+Q A+D T RR+ Q E+N+ H I P+S I E + Sbjct: 544 AARNVNGRVLMFAKKITKSMQEAMDTTLARRKMQEEYNRAHGITPRSASRNIEESLH--- 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ED T + A + + + +K LRKQM AA L FE+AA +RDEI +++ Sbjct: 601 VED-GTEILRKGANLEKMPAAERASIIKELRKQMLEAAAQLEFEKAAALRDEIAKIR 656 >gi|326335519|ref|ZP_08201706.1| excision endonuclease subunit UvrB [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692285|gb|EGD34237.1| excision endonuclease subunit UvrB [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 667 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/658 (50%), Positives = 452/658 (68%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P GDQP AIA L+ GI+ +EK Q LLGVTGSGKTFT+A V+E +Q P +V+A Sbjct: 3 FQLISDFKPMGDQPGAIASLVSGINDQEKYQTLLGVTGSGKTFTIANVVEQVQVPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P T YIEK+ SINE I+RMR Sbjct: 63 HNKTLAAQLYNEFKAFFPNNAVEYFVSYYDYYQPEAYIPVTGVYIEKDLSINEDIERMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D +VV+SVSC+YGIG+ + + ++ + G ++ + + + LV+ Y R Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPLEFQKNVISIGEGQTLTRTKFMHQLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FRV GD I++FP + E RV FGN+IE I F T + I +E I I Sbjct: 183 TTADFLHGNFRVKGDVIDVFPGYSE-TPLRVHFFGNEIELIETFDRETNKTIERLEKINI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+K I+++L ++ + G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQAAIKDIQDDLVKQIEFFQSAGKTLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL R PG P L +Y P+D L+ +DESH TIPQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDRRPPGSRPFCLIDYFPKDFLMVIDESHATIPQVRAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++ GI VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPTDYELQKSGGIYVEQVIRPTGLLDPKI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EI ++ R+L+T LTKRMAE+LT+YL + +R RY+HS+V TL Sbjct: 422 EVRPSKNQIDDLLEEIQKCVEEDQRVLVTTLTKRMAEELTKYLTKMEVRCRYVHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS S+ QT+GRAA Sbjct: 482 ERIEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSMTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N + I+YAD IT S+++ I+ET RREKQ+ +N H I PQ + ++I + + Sbjct: 542 RNINGRAIMYADKITDSMRVTIEETAYRREKQMNYNLTHGITPQPLHKRIENALSKSPIT 601 Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N + S +S+++ + ++ RK M A+ L+F +AA RD +K L+ Sbjct: 602 EFHYENTPKKKETTSTKPMSREELEKEIQQTRKLMEAASKELDFIQAAHYRDLLKELQ 659 >gi|289549151|ref|YP_003474139.1| excinuclease ABC subunit B [Thermocrinis albus DSM 14484] gi|289182768|gb|ADC90012.1| excinuclease ABC, B subunit [Thermocrinis albus DSM 14484] Length = 663 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/654 (50%), Positives = 449/654 (68%), Gaps = 3/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++TD P+GDQP AI QLL+ + K Q+LLG TG+GKTFT+A VI +P +++ Sbjct: 7 FLLKTDLKPAGDQPKAIKQLLENLEKGVKEQVLLGATGTGKTFTIANVIAQYNKPTLIVV 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NKILAAQLY E K FP NAVEYF+SYYDYYQPEAY+P D YIEK++SINE ++R RH Sbjct: 67 HNKILAAQLYRELKELFPDNAVEYFISYYDYYQPEAYIPEKDLYIEKDASINEILERYRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT S+LER D IVV+SVSCIYG+GS +SY M + +++GD + +L LV+ Y+R Sbjct: 127 SATVSVLERRDVIVVASVSCIYGLGSPDSYYSMRIPIEVGDRISITKLTRKLVEIGYQRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I R F V G+++EI PS ED R+ + +++E I + I +V + ++ Sbjct: 187 DYSIKRAVFSVKGNALEIIPSDAEDRLVRIEFWDDEVESIKILDAINRHVIDSVNRVVLF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV PR + A+K I+++L R+ K GR +EAQRL QR +D+EM+ G C+ Sbjct: 247 PASHYVAPRDRIEEALKEIEKDLHERVEWFRKRGRHVEAQRLYQRTMHDIEMIRELGHCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GR PGEPP TL +Y P+D LL +DESHVT+PQI MY GD RK L EY Sbjct: 307 GIENYSRYFDGRKPGEPPFTLLDYFPKDFLLIIDESHVTLPQIRAMYNGDRSRKEKLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 G+RLPS +DNRPL F+E+ I VSATPG WELE+ +G +VEQI+RPTGL+DP VE Sbjct: 367 GWRLPSALDNRPLTFQEFLERINQVIYVSATPGEWELERSKGAVVEQIVRPTGLLDPEVE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RS + Q+ED+ EI + ++G R L+ TKR+AE++ EYL +R I+ +YMHS+ +E Sbjct: 427 VRSTQGQLEDLVKEIQIRKKRGERALVLTTTKRLAEEVAEYLNDRKIKAKYMHSDQDAIE 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +II++LR G D +VG+NLLREGLD+PE LVAIL+ADKEGFLRS TSLIQTIGRAAR Sbjct: 487 RAKIIKELREGSIDAIVGVNLLREGLDLPEVSLVAILEADKEGFLRSYTSLIQTIGRAAR 546 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N+N K ILYAD IT S+Q AI+ET RRR Q ++N++H I P+S+ + + E+ + +E+ Sbjct: 547 NINGKAILYADRITPSMQRAIEETNRRRRIQQQYNQEHGITPKSITKPVKEL---LAIEE 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + +++ + L K+M A FE+AA++RDEIK+L+ Sbjct: 604 LDYVKLPTHLPKGIKTEEDILEKIAKLEKEMWECAKRWEFEKAAQLRDEIKKLR 657 >gi|269123687|ref|YP_003306264.1| excinuclease ABC, B subunit [Streptobacillus moniliformis DSM 12112] gi|268315013|gb|ACZ01387.1| excinuclease ABC, B subunit [Streptobacillus moniliformis DSM 12112] Length = 658 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/659 (50%), Positives = 466/659 (70%), Gaps = 15/659 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI ++++ I + Q+LLGVTGSGKTFT+A +I+ + RPA++MA Sbjct: 3 FKLHSDYKPTGDQPEAIKKVVENIKNGISDQILLGVTGSGKTFTIANIIKELNRPALIMA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+S+INE+ID++ H Sbjct: 63 PNKILAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIQSTDTYIEKDSAINEEIDKLTH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKR 319 +AT +LL R D IV++SVS IYG+GS SY+ + + I S + +KEL+ SL+ +Y+R Sbjct: 123 AATAALLNRKDVIVIASVSAIYGLGSPNSYADRSLYVDIALSGIGRKELIKSLLSLRYER 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D + R FRV GD I+++P + +D+ +R F ++E ISE + LT +KIR+++ + + Sbjct: 183 NDAILERAKFRVKGDVIDVYPIY-QDIVYRFEFFDEELESISELHTLTYKKIRDIKRLNL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 +HY++ T N + I+EE+ R+ E +L+EAQR++QR YD+EM+ G C Sbjct: 242 MPATHYLSEVDT-NVLVDNIREEMNERIKYFEDRLQLVEAQRIKQRTEYDIEMIREIGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + +ENYSRYLTG+ GE P TL +Y PE ++F+DESH+ +PQI GM GD RK L Sbjct: 301 KGMENYSRYLTGKKSGEAPYTLLDYFPESPIVFLDESHIMVPQIGGMSNGDRSRKEMLVN 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLR EE+ + VSATP +E+ + G IVE ++RPTG+V+P + Sbjct: 361 HGFRLPSALDNRPLRHEEFFNKVEQVVYVSATPSDYEINESNGEIVELLVRPTGIVEPSI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + QV+++ D+I +G RIL+T LTK+MAE+LTEY + I+V+YMHSE+ T+ Sbjct: 421 EIRPTKNQVDNLMDDIKERVSRGERILVTTLTKKMAEELTEYYLDYGIKVKYMHSEISTI 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI++ LR G+FDVLVGINLLREGLD+PE LVAIL+ADKEGFLRS+ SLIQT+GRAA Sbjct: 481 DRVEIVKGLRNGEFDVLVGINLLREGLDLPEVSLVAILEADKEGFLRSRRSLIQTMGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDP 735 RNVN VILYAD ITKS++ AIDE RRR+ Q +N ++NI PQ+VK E ++E D Sbjct: 541 RNVNGHVILYADKITKSMKEAIDEVERRRDVQERYNMENNIVPQNVKAHLTESLLEYTDE 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ED ++ S K+ + +K + +M A+N +EEA R+++ LK Sbjct: 601 V--EDKKENKVTFK------SIKELEKEIKKVEAEMKKFAENYQYEEAIDRRNKLNELK 651 >gi|255536616|ref|YP_003096987.1| excinuclease ABC subunit B [Flavobacteriaceae bacterium 3519-10] gi|255342812|gb|ACU08925.1| Excinuclease ABC subunit B [Flavobacteriaceae bacterium 3519-10] Length = 663 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/665 (50%), Positives = 461/665 (69%), Gaps = 13/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+Q++Y P+GDQP AI +L KG+ EK Q LLGVTGSGKTFT+A V+ +Q+P +V+A Sbjct: 3 FQLQSEYKPTGDQPVAIDKLTKGLEIGEKYQTLLGVTGSGKTFTVANVVNNVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEA++ T+TYIEK+ SINE+++++R Sbjct: 63 HNKTLAAQLFMEFKEFFPDNAVEYFVSYYDYYQPEAFIASTNTYIEKDLSINEEVEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA+ SLL R D ++V+SVSCIYGIG+ +++ +++LK + + + L LV Y R Sbjct: 123 SASASLLSGRRDVLIVASVSCIYGIGNPSEFNKSLIELKKSSKITRTDFLHKLVNALYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD I+++P++ D A RV FG++IE+I F PLTG + + + + I Sbjct: 183 TLNEFTRGTFRVKGDVIDVYPAY-ADNAVRVQFFGDEIEKIYSFNPLTGNIMSDFDEMNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + T A++ I++++ ++ + EA+RL++R DLEM++ G C Sbjct: 242 YPANLFVTSKETQVGAIREIQDDMVKQVDFFNSIEKPFEAKRLQERTELDLEMMKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG P L +Y P+D L+ +DESHVT+PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYFDRRLPGTRPFCLLDYFPKDFLMVIDESHVTVPQVHAMYGGDRSRKEVLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLP+ MDNRPL+FEE+ ++ I VSATP +ELE+ G VEQIIRPTGL+DP + Sbjct: 362 HGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELEKSGGEYVEQIIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +IR + Q++D+ +EI + R+L+T LTK+MAE+LT+Y IR RY+HS+V+TL Sbjct: 422 DIRPSINQIDDLIEEIRKRTEVDERVLVTTLTKKMAEELTKYFTRFGIRTRYIHSDVETL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I++DLR+G FDVLVG+NLLREGLD+PE LVAILDADKEG LRS+ SL+QTIGRAA Sbjct: 482 ERIQIMQDLRVGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN + ILYAD IT S+Q AIDET RR+KQ+E+N+KH + P S+ +KI E++ Sbjct: 542 RNVNGRAILYADKITVSMQRAIDETNYRRQKQMEYNEKHGLVPTSLNKKISEILVGRSKD 601 Query: 734 --DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 DP + ++ D K + + +K M AA NL+F +AA++RDEI Sbjct: 602 FPDPKYTQKEILKQVAEDKANYG---KDAQVLIAEKQKAMEAAARNLDFIKAAKLRDEIA 658 Query: 792 RLKSS 796 LK++ Sbjct: 659 ALKAT 663 >gi|42526877|ref|NP_971975.1| excinuclease ABC subunit B [Treponema denticola ATCC 35405] gi|81831412|sp|Q73MY7|UVRB_TREDE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|41817192|gb|AAS11886.1| excinuclease ABC, B subunit [Treponema denticola ATCC 35405] Length = 662 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/657 (51%), Positives = 459/657 (69%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQ AI L GI + +K Q L GVTGSGKTFTMA +I+A+Q+P ++++ Sbjct: 4 FKLISDYKPSGDQGEAIKALSDGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP D YIEK++SIN++IDR+R Sbjct: 64 HNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVVS+VSCIYG+G ES+ + + ++ G+++E ++L L+ QY+R Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGENIEIEKLKKQLISLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FRV GD +EIFP+++ED A+R+ +I I +F P++G+ I+ E + IY Sbjct: 184 DAVLERGRFRVKGDVMEIFPAYMED-AYRLEFDWEEIVRIRKFNPISGEVIQEYEELSIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + A++ IK+EL+ RL L KEG+LLEA+RL+ R YD+EML G C Sbjct: 243 PAKHFVMPEDAIPNALERIKKELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + R PGEPP TLF Y P+D LLF+DESHVT PQ+ MY GD RK L ++ Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPL+ +E+ + + VSATPG E++ IVEQ+IRPTGL+DP +E Sbjct: 363 GFRLPCALDNRPLKIDEFEKMLNQAVFVSATPGPKEIKYSTR-IVEQVIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I + Q+E +Y E+ R L+ LTK+MAEDLT+YL ++V+Y+HSEV+T+E Sbjct: 422 IHKSEGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI++ LR G+FDVL+GINLLREG+D+PE + ILDADK GFLRS TSLIQ +GRAAR Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738 N N KV++YAD I+ +++ I+ET RRR Q +NK+H I P+++K+ I +++ + + Sbjct: 542 NENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTRENEIK 601 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++AA L+ L+ K +K L QM AD L FEEAA IRD+I+ +K Sbjct: 602 KEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVK 658 >gi|296125069|ref|YP_003632321.1| excinuclease ABC, B subunit [Brachyspira murdochii DSM 12563] gi|296016885|gb|ADG70122.1| excinuclease ABC, B subunit [Brachyspira murdochii DSM 12563] Length = 685 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/661 (50%), Positives = 469/661 (70%), Gaps = 12/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++++ PSGDQ AI L+KG+ ++ K Q LLGVT SGKTFT+A VIE RP +VM+ Sbjct: 6 FKLESNFKPSGDQVTAIESLVKGLENKNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP D YI+K++S+N++IDR+R Sbjct: 66 HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++ ++ E++ LV QY+R Sbjct: 126 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYISIEKDGEYDRDEIIEKLVSIQYERV 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R FRV GD++EI ++ ++V R+ FG+ +E I + P+T +K+ + + IY Sbjct: 186 KDVLERARFRVIGDTLEIMSAYSDEV-IRIEFFGDTVERIIKINPVTRKKLSEQDRVVIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT L +K I+EEL+ + + + EG+L+EA+R+ R YDLEML G C Sbjct: 245 PAKHFVTGGDKLAAGIKLIEEELEEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR L+GR G+ P L +Y P+D L +DESHV++PQI GM+ GD RK TL +Y Sbjct: 305 GIENYSRPLSGRKEGDRPACLIDYFPKDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL FEE+ L TI +SATP +EL++ + VEQIIRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLFFEEFEKLTNDTIYISATPAEYELKKSSKV-VEQIIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + Q++ + +EI RI +T LTK+MAEDLT+YL E +R RY+HS+++T+E Sbjct: 424 VYPIDGQIDRILEEIKKTISNNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EIIRDLRLG FDVLVGINLLREGLD+PE L+ ILDADK GFLR+ T+LIQTIGRAAR Sbjct: 484 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +VI++AD+I+ ++++AIDET RRR+ Q+E+NK+HNI P+++ +KI ++I+ E+ Sbjct: 544 NANGRVIMFADSISDAMKVAIDETERRRKIQMEYNKEHNITPKTIIKKIQDIIER---EE 600 Query: 741 AATTN--ISIDAQQLSL-----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 T+ + D ++ + K++ ++K L K+M A+D+L FE+A IR++I +L Sbjct: 601 KVETSYELHFDFRRFNERVKIDPKQQSDEYIKELEKEMKRASDSLEFEKAIEIREKINQL 660 Query: 794 K 794 K Sbjct: 661 K 661 >gi|261415175|ref|YP_003248858.1| excinuclease ABC, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371631|gb|ACX74376.1| excinuclease ABC, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 732 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/692 (49%), Positives = 466/692 (67%), Gaps = 38/692 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y +GDQP AI +L +G + E+ Q LLGVTGSGKTFTMA VI+ + +P +++ Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEYFVSYYDY+QPEAY+P TDT+IEK++SIN++ID++R Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R D I+V+SVSCIYG+GS Y ++V++K GD ++ ++L LV QY R Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG+FRV GD IE+ PS+ ED R+ +FG++++ + F +TG+ I+ VE + I Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT ++ I++EL RL EL+KEG++LE+ RL R YD+EML TG C Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR + R PG P TL +Y +D LL +DESHV+IPQ+ GM GD RK TL +Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLP +DNRP+ F E+ + P ++ VSATPG +EL++ G++ EQI RPTGL+DP + Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+ + Q++ + I + G R+L+T LTK+MA+DLTE+ E +R +Y+HS++KTL Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER E+IR LR G++DVLVGINLLREGLD+PE +VAILDADKEGFLR+ SLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDPI 736 RNVN V+L+AD +T+S+Q AIDET RRR Q E NK+H I P+SV KI E +IDP+ Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640 Query: 737 LLEDAATTNISIDAQ-----------QLSLSKKKGK----------------------AH 763 TT+ D + Q S ++K K + Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700 Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L L +QM AA L+FEEAARIRD I+ L + Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSLDA 732 >gi|325473927|gb|EGC77115.1| UvrABC system protein B [Treponema denticola F0402] Length = 662 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/657 (51%), Positives = 458/657 (69%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQ AI L GI + +K Q L GVTGSGKTFTMA +I+A+Q+P ++++ Sbjct: 4 FKLISDYKPSGDQGEAIKALSDGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP D YIEK++SIN++IDR+R Sbjct: 64 HNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVVS+VSCIYG+G ES+ + + ++ G+++E ++L L+ QY+R Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGENIEIEKLKKQLISLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FRV GD +EIFP+++ED A+R+ +I I +F P++G+ I+ E + IY Sbjct: 184 DAVLERGRFRVKGDVMEIFPAYMED-AYRLEFDWEEIVRIRKFNPISGEVIQEYEELSIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + A++ IK EL+ RL L KEG+LLEA+RL+ R YD+EML G C Sbjct: 243 PAKHFVMPEDAIPNALERIKNELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + R PGEPP TLF Y P+D LLF+DESHVT PQ+ MY GD RK L ++ Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPL+ +E+ + + VSATPG E++ IVEQ+IRPTGL+DP +E Sbjct: 363 GFRLPCALDNRPLKIDEFEKMLNQAVFVSATPGPKEIKYSTR-IVEQVIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I + Q+E +Y E+ R L+ LTK+MAEDLT+YL ++V+Y+HSEV+T+E Sbjct: 422 IHKSEGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI++ LR G+FDVL+GINLLREG+D+PE + ILDADK GFLRS TSLIQ +GRAAR Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738 N N KV++YAD I+ +++ I+ET RRR Q +NK+H I P+++K+ I +++ + + Sbjct: 542 NENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTRENEIK 601 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++AA L+ L+ K +K L QM AD L FEEAA IRD+I+ +K Sbjct: 602 KEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVK 658 >gi|223982821|ref|ZP_03633045.1| hypothetical protein HOLDEFILI_00319 [Holdemania filiformis DSM 12042] gi|223965220|gb|EEF69508.1| hypothetical protein HOLDEFILI_00319 [Holdemania filiformis DSM 12042] Length = 659 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/657 (51%), Positives = 460/657 (70%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AI +L+ G+ + +K Q+LLG TG+GKTFT+ VIE + RP +V A Sbjct: 6 FQLVSKYKPTGDQPGAIDKLVAGLAAGKKEQVLLGATGTGKTFTIGNVIERVNRPTLVFA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FPHN VEYFVS +DYYQPEAY+P+TDTYIEK + N+++D +R Sbjct: 66 HNKTLAGQLYSEFKELFPHNRVEYFVSNFDYYQPEAYMPKTDTYIEKNAMTNDELDMLRM 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A S+LER D I+V+SV+CIY Y M +++GD +++ +LL LV +QYKR Sbjct: 126 AAVNSVLERRDTIIVASVACIYASSDPNQYRDMFFTIRVGDHIDRNDLLRKLVDRQYKRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI-KI 379 D+ RGTFRV GD+IE+ H + R+ MF ++IE I E PLTG K++N T+ + Sbjct: 186 DMDRARGTFRVRGDTIEVNMGHTDTFMLRIEMFDDEIERICEVDPLTG-KLQNAYTVYNV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + S Y P+ + A + I+EEL++RL EL+++G+L+E QRLEQR YDLE L G C Sbjct: 245 FPASGYARPKDQIERACQEIEEELELRLAELDRQGKLVEKQRLEQRCRYDLEALREFGVC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS ++ GR G+ P LF+Y P+D LL VDESHV++PQI GMY GD RK TL E Sbjct: 305 PGIENYSSHIDGRPAGQRPWNLFDYFPKDFLLVVDESHVSLPQIRGMYNGDRARKETLVE 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRP+RFEE+ L I VSATPG++ELE+ G +VEQIIRPTGL+DP + Sbjct: 365 YGFRLPSALDNRPMRFEEFETLVNQAIYVSATPGNYELEKVHGEVVEQIIRPTGLLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R R Q++D+ DEI+ R+L+T LT +MAEDLT+YL + +++V Y+H E TL Sbjct: 425 TVRPTRGQIDDLLDEIHHCIAANERVLITTLTVKMAEDLTDYLKKNDLKVAYLHHETLTL 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER E IRDLR GK+DVLVGINLLREG+DIPE LVAILDADKEGFLRS+ SLIQTIGRAA Sbjct: 485 ERTETIRDLRRGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + +VI+Y D +T S++ AI+ET RRR Q+ +N++H+I P ++ + I E I + Sbjct: 545 RNAHGRVIMYGDKMTDSMKKAIEETNRRRAIQIAYNEEHHITPTTIVKDIGEAIHGKETQ 604 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + A + ++ ++K + +L K+M AA L+FE AA +RD + LK++ Sbjct: 605 EMAARYMKKKSKLGKKEQQK---LIDNLEKEMKDAARVLDFERAAELRDMLLELKAT 658 >gi|228473000|ref|ZP_04057757.1| excinuclease ABC subunit B [Capnocytophaga gingivalis ATCC 33624] gi|228275582|gb|EEK14359.1| excinuclease ABC subunit B [Capnocytophaga gingivalis ATCC 33624] Length = 667 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/658 (49%), Positives = 453/658 (68%), Gaps = 5/658 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +D+ P GDQPAAIA L+ GI+ +EK Q LLGVTGSGKTFT+A V+E +Q P +V+A Sbjct: 3 FQLVSDFKPMGDQPAAIASLVNGINDQEKYQTLLGVTGSGKTFTIANVVEQVQVPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P T YIEK+ SINE I+RMR Sbjct: 63 HNKTLAAQLYNEFKAFFPNNAVEYFVSYYDYYQPEAYIPVTGVYIEKDLSINEDIERMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D +VV+SVSC+YGIG+ + + ++ ++ G ++ + + + LV+ Y R Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPLEFQKNVISIEEGQTLTRTKFMHQLVQSLYAR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FRV GD I++FP + E RV FGN+IE I F T + I ++ + I Sbjct: 183 TTADFLHGNFRVKGDVIDVFPGYSE-TPIRVHFFGNEIELIESFDRETNKTIERLDKLNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A++ I+++L ++ + G+ LEA+RLE+R +DLEM+ G C Sbjct: 242 YPANMFVTSPDVLQAAIRDIQDDLVKQIEFFQSVGKTLEAKRLEERTNFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL R PG P L +Y P+D L+ +DESH T+PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDRRPPGSRPFCLIDYFPKDFLMVIDESHATVPQVRAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ I VSATP +EL++C G+ VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKCGGVYVEQVIRPTGLLDPKI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R ++ Q++D+ +EI ++ R+L+T LTKRMAE+LT+YL + +R RY+HS+V TL Sbjct: 422 EVRPSKNQIDDLLEEIQKCVEEDQRVLVTTLTKRMAEELTKYLTKMEVRCRYVHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIEI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS S+ QT+GRAA Sbjct: 482 ERIEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSMTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ + I+YAD IT S+++ I+ET RREKQ+ +N H I PQ + +KI + + Sbjct: 542 RNIDGRAIMYADKITDSMRVTIEETAYRREKQMNYNLTHGITPQPLHKKIENALSKSPIT 601 Query: 740 DAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N + +S+ + + ++ RK M A+ L+F +AA RD +K L+ Sbjct: 602 EFHYENTPKKKEHSPTKPMSRGELEKEIQQTRKLMEAASKELDFIQAAHYRDLLKELQ 659 >gi|330752228|emb|CBL87185.1| UvrABC system protein B [uncultured Sphingobacteria bacterium] gi|330752271|emb|CBL87227.1| UvrABC system protein B [uncultured Sphingobacteria bacterium] Length = 672 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/666 (50%), Positives = 464/666 (69%), Gaps = 13/666 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI QL++GI+ E+ Q+LLGVTGSGKTFTMA VIE +QRP +++ Sbjct: 3 FKLTSKFEPTGDQPNAIKQLVEGINKNEEFQVLLGVTGSGKTFTMANVIEQVQRPTLILT 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLY+EF FFP NAVE+FVSYYDYYQPEAY+ +DTYIEK+ SINE+ID++R Sbjct: 63 HNKTLTAQLYAEFMEFFPDNAVEFFVSYYDYYQPEAYMHGSDTYIEKDLSINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D I+VSSVSCIYG+G+ E + ++++K G+ + + L LV Y R Sbjct: 123 RATSSLLSGRRDVIIVSSVSCIYGMGNPEDFKNSVIRIKKGEVIARNAFLYKLVDSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I R TFRV GD+++I ++ D +RV FG++IE+I TG++I +++ I Sbjct: 183 TEIDFKRATFRVKGDTVDINLPYV-DYGYRVIFFGDEIEKIERIEIETGKRIHDLDHCAI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + Y+ P+ L +K I++EL E EGR +EA+R+ +R+T+DLEM+ G C Sbjct: 242 FPANLYIAPKDRLKFIIKDIEDELYDHEKFFEAEGRFIEAKRVRERVTFDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PG P L +Y PED L+ VDESHVT+PQ+ GM+ GD RK L Sbjct: 302 NGIENYSRFFDGRKPGTRPFCLLDYFPEDYLMIVDESHVTLPQVRGMWGGDRARKLNLVN 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPL FEE+ + T+ VSATPG++ELEQ +G++VEQI+RPTGL+DPP+ Sbjct: 362 YGFRLPSAIDNRPLSFEEFESVTNQTVYVSATPGNYELEQTEGVVVEQIVRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI+ + RIL+T LTKRMAE+LT+YL + NI+V+Y+HSEV TL Sbjct: 422 EVRPSINQIDDLLEEIHGRIEIDERILITTLTKRMAEELTKYLEKLNIKVQYIHSEVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EII++LRLG FDVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL QT GRAA Sbjct: 482 DRVEIIKNLRLGIFDVLVGVNLLREGLDMPEVSLVAILDADKEGFLRNNRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI YAD T S+Q+ IDET RRR Q+ +N+K I P ++ + ++++ + Sbjct: 542 RNSNGLVIFYADKTTDSMQITIDETNRRRATQIAYNEKWGITPTTITKSKEDIVNQRTVL 601 Query: 740 D--AATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D A I+ +++S +SK K + +K +M AA +L+F AA+ RD Sbjct: 602 DIRVAQPKAYIEPEEISVAADPIIAYMSKDKIEDMIKQTEFKMKKAAKDLDFISAAQYRD 661 Query: 789 EIKRLK 794 E+ LK Sbjct: 662 ELFALK 667 >gi|311742591|ref|ZP_07716400.1| excision endonuclease subunit UvrB [Aeromicrobium marinum DSM 15272] gi|311314219|gb|EFQ84127.1| excision endonuclease subunit UvrB [Aeromicrobium marinum DSM 15272] Length = 694 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/681 (50%), Positives = 474/681 (69%), Gaps = 18/681 (2%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 ++ + + ++ +DY P+GDQPAAIA+L + I + +LLG TG+GKT T A + E Sbjct: 4 VSELQRQVAPIEVVSDYRPAGDQPAAIAELSRRIAEGAQDTVLLGATGTGKTATTAWLAE 63 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +VM PNK+LAAQ +E + P+NAVEYFVSYYDYYQPEAY+ ++DTYIEK+SS Sbjct: 64 QIQRPMLVMMPNKLLAAQFANELRELLPNNAVEYFVSYYDYYQPEAYIAQSDTYIEKDSS 123 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE+++R+RHSAT SLL R D IVV++VSCIYG+GS + Y + ++ K+G+ + ++ LL Sbjct: 124 VNEEVERLRHSATWSLLTRRDVIVVATVSCIYGLGSAQEYLERMIGFKVGEEMPRERLLR 183 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 +LV+ QY R D+ RGTFRV GD++EIFP + E A RV FG++IE + +PLTG+ Sbjct: 184 TLVEAQYVRNDVATTRGTFRVKGDTVEIFPVYQEH-AVRVEFFGDEIERLMTLHPLTGEV 242 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + + + + +HY T+ AM I+ EL+ RL ELE G+LLEAQRL R TYDL Sbjct: 243 LSDDTELYVGSATHYAAGPQTMQRAMGTIRLELEERLAELEGAGKLLEAQRLRMRTTYDL 302 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+E G+C IENYSR++ R PG P L +Y P+D +L VDESHVTIPQI MY GD Sbjct: 303 EMMEQVGTCAGIENYSRHMDQRGPGTPGHCLLDYFPDDFVLVVDESHVTIPQIGAMYEGD 362 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK +L E+GFRLPS MDNRPL+++E+ T+ +SATPGS+E+ + G +VEQIIR Sbjct: 363 MSRKRSLVEHGFRLPSAMDNRPLKWDEFLDRIGQTVYLSATPGSYEMGRTGGDVVEQIIR 422 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP V ++ Q++D+ +I ++ R+L+T LTK+M+EDLT+YL E IR R Sbjct: 423 PTGLIDPEVVVKPTSGQIDDLIGQIRERTERDERVLVTTLTKKMSEDLTDYLLEAGIRTR 482 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE LVAILDADKEGFLRS S Sbjct: 483 YLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRS 542 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQTIGRAARNV+ +VI+YAD IT S+ AIDET RRREKQ+ +N + ++PQ ++++I Sbjct: 543 LIQTIGRAARNVSGQVIMYADRITDSMAQAIDETNRRREKQIAYNLEKGVDPQPLRKRIG 602 Query: 731 EVIDPILLEDAATTNI-----------------SIDAQQLSLSKKKGKAHLKSLRKQMHL 773 ++ D + EDA T + A + L + ++ L +QM Sbjct: 603 DITDMLAREDADTETLLAATGDKRRRGAPVPLGEPSADRGGLPSGELAQLIEQLSEQMRA 662 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA L FE AARIRDE+ LK Sbjct: 663 AAAELQFEVAARIRDEVSDLK 683 >gi|325958855|ref|YP_004290321.1| UvrABC system protein B [Methanobacterium sp. AL-21] gi|325330287|gb|ADZ09349.1| UvrABC system protein B [Methanobacterium sp. AL-21] Length = 653 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/656 (50%), Positives = 455/656 (69%), Gaps = 11/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI + +G + K Q LLGVTGSGKTFTMA V++ +++P +V++ Sbjct: 4 FKLISPYKPLGDQPKAIKSISEGFNKGLKHQTLLGVTGSGKTFTMANVVKEVKKPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+ ++DTYI+KE+ IN++ID MRH Sbjct: 64 HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYIAQSDTYIDKEAQINDEIDMMRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SLL R+D IVVSSVSCIYGIGS E Y +I+ +++GDS +++++ +L+ QY+R Sbjct: 124 STTQSLLTRDDVIVVSSVSCIYGIGSPEDYGGLILSVEVGDSDGREKIIRTLIDMQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EI P+ ++ R+ +FG++++ IS PL G R+++ + ++ Sbjct: 184 DIDFTRGKFRVRGDVVEIRPAQ-GNIGIRIELFGDEVDRISLIDPLLGSVKRDMDRVVVF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+VT + + +A+ I++EL+ RL L + +L+EAQRLEQR +D+EML+ G C Sbjct: 243 PAKHFVTSKDKIESAITNIEKELEERLTVLHSQNKLVEAQRLEQRTRFDMEMLQEVGYCT 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+GR GE P TL +Y P+D L +DESHVT+PQI GMY GD RK +L ++ Sbjct: 303 GIENYSMHLSGRKWGETPITLMQYFPDDFLTIIDESHVTVPQIGGMYAGDRARKDSLVDH 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F E+ ++ + VSATP +EL Q +VEQIIRPTGLVDP + Sbjct: 363 GFRLPSARENRPLNFSEFEMIQNQVLYVSATPAKYELGISQN-MVEQIIRPTGLVDPEII 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ QV+ + I ++ R+L+T LTK+MAEDLT+Y + I+VRY+HS++ TLE Sbjct: 422 VKPVVGQVDHLLGAIKAKVEKDQRVLVTTLTKKMAEDLTDYYAKVGIKVRYLHSDITTLE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RI+II +LR G FD LVG+NLLREGLD+PE LV ILDADKEGFLRSKTSLIQTIGRAAR Sbjct: 482 RIDIIDELRRGSFDCLVGVNLLREGLDLPEVALVGILDADKEGFLRSKTSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VI+YAD IT SI A++ T RR+ Q+ +NK++ INP+S + E Sbjct: 542 NVEGQVIIYADKITDSISSAVEITNERRKLQMAYNKENGINPKSTVRSVKE--------- 592 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + I + K + +K L M A+ L+FE AA+IRD+I+ L+ + Sbjct: 593 KTKKDTKIRDNVKDIPKDELLLLIKDLEADMKKASQKLDFETAAKIRDKIQFLEGA 648 >gi|23465559|ref|NP_696162.1| excinuclease ABC subunit B [Bifidobacterium longum NCC2705] gi|81847289|sp|Q8G5L9|UVRB_BIFLO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|23326224|gb|AAN24798.1| excinuclease ABC subunit B [Bifidobacterium longum NCC2705] Length = 703 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AIA+L + I + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK+G + + +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG +I + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+EEL+ RL EL K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMERALKTIREELEERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +E+ G +VEQIIRPTGL+DP ++ Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKID 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|294056378|ref|YP_003550036.1| excinuclease ABC, B subunit [Coraliomargarita akajimensis DSM 45221] gi|293615711|gb|ADE55866.1| excinuclease ABC, B subunit [Coraliomargarita akajimensis DSM 45221] Length = 687 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/660 (50%), Positives = 459/660 (69%), Gaps = 11/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P GDQP AI L+ + + K Q LLGVTGSGKTF+MA VI+ +QRPA++++ Sbjct: 3 FKLSSEYAPQGDQPEAIRSLVDSVRAGNKYQTLLGVTGSGKTFSMANVIQELQRPALIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN++I+R+R Sbjct: 63 HNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDEIERLRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A+ SL+ R D IV++SVSCIYG+GS E + M++ L G + + L+ LV+ Y+R Sbjct: 123 AASSSLISRRDVIVIASVSCIYGLGSPEDFKDMMIPLSRGMELSRDTFLARLVEILYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGTFRV GD ++I+P+++E A R+ +G++++ I E P+TG+ +++ +Y Sbjct: 183 DVDFKRGTFRVRGDVVDIYPAYME-TAIRLEFWGDELDAIFELDPVTGETSGSLDMFHLY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + YVTP+ + A+ I++EL R+ E + LLEAQR++ R YD+E+L+ G C Sbjct: 242 PATQYVTPKDKIERAVGGIRQELDERIAWFESQNLLLEAQRIKMRTEYDIELLQEMGFCT 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGE P L ++ PED LLFVDESHVT+PQ+ MY GD RK L +Y Sbjct: 302 GIENYSRYLSGRKPGERPFCLIDFFPEDFLLFVDESHVTLPQVRAMYNGDRARKERLVQY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP + EE+ + TI VSATP + E + I EQ+IRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPQKIEEFESITGQTIYVSATPAAHEFD-VSTTIAEQVIRPTGLLDPELE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QVEDV E+ A+ G R L+T LTKRM+EDLT+YL E ++ V Y+HS++ +E Sbjct: 421 LRPIKGQVEDVIGEVRKASDAGERTLITTLTKRMSEDLTDYLREADLSVEYLHSDIDAIE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+R LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS TSLIQT GRAAR Sbjct: 481 RVEILRRLRKGDFDVLIGVNLLREGLDLPEVALVAILDADKEGFLRSSTSLIQTAGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 + +VILYADTIT SI+ ++ T RREKQ+ +N+ H I P+SV+ + E L Sbjct: 541 HEKGRVILYADTITDSIKHTLETTGYRREKQMAYNEAHGITPRSVERGLDES-----LHA 595 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + S + + ++ + + + ++M AA L FE+AA IRD+I L+S Sbjct: 596 PGSKRYSQEEDEPLIAAESDDRDVAEVIAEMEEEMLEAARKLEFEKAALIRDQIDILQSG 655 >gi|126179267|ref|YP_001047232.1| excinuclease ABC subunit B [Methanoculleus marisnigri JR1] gi|125862061|gb|ABN57250.1| Excinuclease ABC subunit B [Methanoculleus marisnigri JR1] Length = 642 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/659 (50%), Positives = 457/659 (69%), Gaps = 20/659 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 +T F ++ D+ P+G QP AI +L G+ E+ Q LLGVTGSGKTFT+A V+E +Q+P + Sbjct: 1 MTAFHLKADFKPTGSQPDAIRKLTDGLSRGEQYQTLLGVTGSGKTFTIANVVEEVQKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQLY+EF++FFP N VEYFVSYYDYYQPE+Y+ + D YIEK++ IN +I++ Sbjct: 61 VIAHNKTLAAQLYNEFRSFFPDNRVEYFVSYYDYYQPESYIAKRDLYIEKDAQINPKIEQ 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 MR +AT SLL R D I+V+SVSCIYG+G+ E++ M ++K+ D + + +++ LV Q+ Sbjct: 121 MRLAATASLLSRPDTIIVASVSCIYGLGNPENFQGMGFEMKVRDRMRRDDIIRRLVDIQF 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R DI ++ G FRV GD+I+I P + ++ R+ +FG++I+ ISE +G+++ ++ Sbjct: 181 ERNDIELMPGRFRVKGDTIDIVPGYFNNI-IRIELFGDEIDRISEIDKTSGERLEAMDYF 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y H+V P A+ I++EL+ L L+ +LEA RL QR YD++ML TG Sbjct: 240 FVYPARHFVAPEEEKERAIASIEQELEEWLPNLD----MLEAHRLRQRTLYDIDMLRETG 295 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +C+ IENYSR+ GR GE P L +Y PED L+ +DESH T+PQ+ GMY GD+ RK +L Sbjct: 296 TCKGIENYSRHFDGRKAGEQPYCLLDYFPEDFLMVIDESHQTLPQVRGMYNGDYSRKKSL 355 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS DNRPL+FEE++ I VSATPG +EL++ + EQIIRPTGLVDP Sbjct: 356 VDYGFRLPSAFDNRPLKFEEFSGYMKNVIFVSATPGDYELKRSS--VAEQIIRPTGLVDP 413 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VEIR Q+ DV EI ++G RILLT LTKR+AE+L+EYL E+ I+ RY+HSE+ Sbjct: 414 AVEIRPIEGQIPDVMTEIRATIERGDRILLTTLTKRLAEELSEYLAEQGIKTRYLHSEID 473 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ER EIIR LRLGK+DVLVGINLLREGLDIPE G V ILDADKEGFLR SL+QTIGR Sbjct: 474 TIERTEIIRQLRLGKYDVLVGINLLREGLDIPEVGFVGILDADKEGFLRDARSLVQTIGR 533 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN+KV+LYADT+T SI+ A+ ET RRR QL++N +H I PQ+ ++ PI Sbjct: 534 AARNVNAKVVLYADTMTDSIKKAMAETGRRRAMQLDYNVRHGITPQT-------IVKPIR 586 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 ++ T+I + K + + L M AA+ L FE A +RD IKRL+ Sbjct: 587 EKEVDITDIK------HVPKSEVPNLIIELEADMREAAERLEFERAIALRDMIKRLQEG 639 >gi|110669574|ref|YP_659385.1| excinuclease ABC subunit B [Haloquadratum walsbyi DSM 16790] gi|109627321|emb|CAJ53811.1| excinuclease ABC chain B [Haloquadratum walsbyi DSM 16790] Length = 700 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/654 (50%), Positives = 456/654 (69%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI L G + Q LLGVTGSGKT T++ V+E +QRP +V+A Sbjct: 21 FRVDAPFDPAGDQPDAINSLASGFDAGMTEQTLLGVTGSGKTNTVSWVVEEIQRPTLVIA 80 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FP NAVEYFVSYYDYYQPEAYV +TDTYI+K+ SINE+IDR+RH Sbjct: 81 HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDLSINEEIDRLRH 140 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G +Y+ M ++ ++G + + ELL+ LV Y+R Sbjct: 141 SATRSLLTRDDVIVVASVSAIYGLGDPANYTDMALRFEVGSQINRDELLAQLVDLNYERN 200 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++E++P + A R+ +G++I+ +S+ PLTG + + ++ Sbjct: 201 DVDFQQGTFRVRGDTVEVYPMYGR-YAVRIEFWGDEIDRLSKLDPLTGNVVSEEPAVLVH 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P L +A+ I+ + R+ E++G L+ AQR+E+R T+D+EML TG C Sbjct: 260 PAEHYSIPEAKLESAIDEIETLMTDRIQYFERQGDLVAAQRIEERTTFDIEMLRETGYCS 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +++ R+ G+PP TL +Y P+D L VDESH T+PQI G + GD RK +L + Sbjct: 320 GIENYSVHMSDRDSGDPPHTLLDYFPDDFLTVVDESHQTLPQIRGQFAGDKSRKDSLVKN 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T + VSATPG++E E + +VEQI+RPT L+DP +E Sbjct: 380 GFRLPTAYDNRPLTFEEFQKKTGTRLYVSATPGTYEREHSEQ-VVEQIVRPTHLIDPAIE 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A QV+D+ + IN ++ R+L+T LTKRM+EDLTE+L E + V YMH E TLE Sbjct: 439 VADATGQVDDLLNRINKRVERDERVLVTTLTKRMSEDLTEFLEEAGVDVAYMHDETDTLE 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IRDLRLG DVLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRAAR Sbjct: 499 RHELIRDLRLGTIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV +VILYAD IT S+ AIDET RRR+ Q ++N++H +PQ++++ I E P +D Sbjct: 559 NVEGEVILYADEITDSMSAAIDETRRRRQIQRKYNEEHGYDPQTIQKAIGETNLPGSDDD 618 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T + + K++ + +++L ++M A +L FE AA IRD+I+ ++ Sbjct: 619 STTRTT-----ETPVDKQEARIQIETLEERMESAVSDLEFELAADIRDQIRDIQ 667 >gi|332827826|gb|EGK00561.1| UvrABC system protein B [Dysgonomonas gadei ATCC BAA-286] Length = 671 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/664 (50%), Positives = 456/664 (68%), Gaps = 12/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y+P+GDQPAAIA L +GI Q LLGVTGSGKTFT+A VI+ + +P +V++ Sbjct: 3 FKLTSYYNPTGDQPAAIAALSEGILQNLPSQTLLGVTGSGKTFTVANVIQNVNKPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T+TYIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYSEFKTFFPDNAVEYFVSYYDYYQPEAYIPSTNTYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + T SLL R D IVVSSVSC+YG+G+ E + + + +G + + L +LV Y R Sbjct: 123 ATTTSLLSGRRDVIVVSSVSCLYGMGNPEDFENSTISIHVGQKLVRDVFLRALVSALYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I G FRV GD++++F ++ + + RV +G++IE I PL+G KI + +I Sbjct: 183 NEIEPKAGNFRVKGDTVDVFLAYGDPIV-RVVFWGDEIESIECLDPLSGVKIDKYDDFRI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + + A+ I+ +L ++ L+ G+ LEA+RL +R+TYDLEM+ G C Sbjct: 242 YPANLFVTTKDRMVRAIAEIEIDLGRQVDFLQSIGKQLEAKRLYERVTYDLEMIREVGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG P L ++ PED +L +DESHVTIPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDNRKPGTRPFCLLDFFPEDFMLVIDESHVTIPQIRAMYGGDHSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL+FEE+ L P TI VSATP +EL + +GI+VEQ+IRPTGL+DPP+ Sbjct: 362 YGFRLPAALDNRPLKFEEFESLVPQTIYVSATPADYELMKSEGIVVEQLIRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI + R L+T LTKRMAE+LT YL ++ Y+HS+V TL Sbjct: 422 DVRPSLNQIDDLMEEIQTRVDKNERTLVTTLTKRMAEELTAYLLNNGMKCSYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 DRVQIMDDLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734 RNVN KVI YAD IT+S++ I+ET RRRE Q+ +NK+H I PQ +++ V Sbjct: 542 RNVNGKVIFYADKITESMEKTINETNRRREIQMAYNKEHGITPQQIRKARTSVFSLRKEE 601 Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +D++ S D Q ++K + K ++ RKQM AA L F EAA+ RD++ Sbjct: 602 QFSVKSYTQDSSIAIASEDKIQY-MTKDELKKAIEKARKQMSAAAKKLEFLEAAQFRDQV 660 Query: 791 KRLK 794 +L+ Sbjct: 661 IKLE 664 >gi|224418058|ref|ZP_03656064.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491] gi|253827389|ref|ZP_04870274.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491] gi|313141597|ref|ZP_07803790.1| exinuclease abc subunit b [Helicobacter canadensis MIT 98-5491] gi|253510795|gb|EES89454.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491] gi|313130628|gb|EFR48245.1| exinuclease abc subunit b [Helicobacter canadensis MIT 98-5491] Length = 658 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/661 (50%), Positives = 463/661 (70%), Gaps = 13/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI +L I S + Q L+GVTGSGKTF+MA +IE +Q P ++M Sbjct: 4 FILNSSYKPAGDQPQAIKKLSDFIKSGSQYQTLIGVTGSGKTFSMAHIIEELQMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE+++R+R Sbjct: 64 HNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IVV+SVS YG+G+ + Y +MI + +IG S Q+ +L LV+ YKR Sbjct: 124 SATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEIGSSYNQRNILLRLVEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ I+I+P++ ED A R+ FG+++E+I + + ++++E+ +Y Sbjct: 184 DSFFDRGDFRVNGEVIDIYPAYSEDEAVRLEFFGDELEKIVILDSVDKKPLKSLESFVLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A+K I++EL RL +KE +++E +RL+ R +DLEM+E+TG C+ Sbjct: 244 AANPFIVGADRLKVAIKNIEKELAERLNFFKKENKMVEYERLKSRTEFDLEMIESTGICK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P +L +Y + + LL VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGKAPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL++EE+ P + VSATP ELE EQ+IRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSGNHTAEQLIRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+ S QVE +YDE +G R+L+T LTK+MAE+LT Y + ++VRYMHSE+ Sbjct: 424 LYEVLSVENQVEVLYDEAKKVIARGERVLVTALTKKMAEELTRYYNDLGLKVRYMHSEID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR LR+G+FD+LVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734 AARNVN KV+L+AD IT S++ A++ T RR KQ NK HNI PQSV K+ E + D Sbjct: 544 AARNVNGKVLLFADKITPSLKKAMEVTDYRRSKQEAFNKAHNIKPQSVSRKLDENLKNQD 603 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +L + A ++ + +++ + +K L K+MH AA L+FEEAAR+RDEI +++ Sbjct: 604 LGMLYEKAK-------KKEKMPRQEREKLVKELTKKMHEAAKRLDFEEAARLRDEIIKMR 656 Query: 795 S 795 + Sbjct: 657 N 657 >gi|23336676|ref|ZP_00121879.1| COG0556: Helicase subunit of the DNA excision repair complex [Bifidobacterium longum DJO10A] gi|189439606|ref|YP_001954687.1| excinuclease ABC subunit B [Bifidobacterium longum DJO10A] gi|189428041|gb|ACD98189.1| DNA excision repair enzyme Helicase subunit [Bifidobacterium longum DJO10A] Length = 703 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/683 (51%), Positives = 471/683 (68%), Gaps = 31/683 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AIA+L + + + E +L+G TG+GKT T A +IE +QRP +++ Sbjct: 12 FVVKSPYKPSGDQPQAIAELAERVENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH Sbjct: 72 PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT +LL R DC+VV++VSCIYG+G+ E Y+ ++ LK+G + + +LL V QYKR Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD++EI P + E++A R+ FG++I+ IS +PLTG +I + I+ Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+K I+EEL+ RL EL K+G+ LEAQRL R TYDLEML G C Sbjct: 251 PASHYVAGPERMERALKTIREELEERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ GR G PP TL ++ P+D LL +DESHVT+PQI MY GD RK TL E+ Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++ E+ T+ +SATPG +E+ G +VEQIIRPTGL+DP + Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKIN 429 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR GK DV+VGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ VI+YAD T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D + ED Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609 Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771 A T++ + + + K+ + LK+ L +QM Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 H AA+ L FE AAR+RDEI+ LK Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692 >gi|298377371|ref|ZP_06987324.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_19] gi|298265785|gb|EFI07445.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_19] Length = 673 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA L +GI S Q LLGVTGSGKTFT+A VI+ +QRP ++++ Sbjct: 3 FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSC+YG+ ++++ + L+ G +++ +LL V Y Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G FRV GD+++IFP+ + +A+R+ + ++I+ IS F PLTG++ + + Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + +N A+ I +L ++ L++ G+ EA+RL +R+T+DLEM+ G Sbjct: 243 NIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G+ P L +Y P+D LL VDESHVTIPQI MY GD+ RK L Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKKNL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS MDNRPL F+E+ L P I VSATP +EL + +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +++R + Q++D+ +EI + + R+L+T LTKRMAE+LT Y+ +R Y+HS+V Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER++I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERVQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733 AARNVN KVI YAD IT S+Q +DET RRREKQ+ +N+ H I P+ V + + ++ Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602 Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +P + + ++ Q +++ + + ++ RKQM AA L+F EAA+ RDE+ Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661 Query: 791 KRLK 794 +L+ Sbjct: 662 VKLE 665 >gi|189501743|ref|YP_001957460.1| excinuclease ABC subunit B [Candidatus Amoebophilus asiaticus 5a2] gi|189497184|gb|ACE05731.1| hypothetical protein Aasi_0293 [Candidatus Amoebophilus asiaticus 5a2] Length = 676 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/664 (49%), Positives = 461/664 (69%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI QL+ GI++ E+ Q LLGVTGSGKTFTMA VI+A+ +P +VM+ Sbjct: 3 FKLTAPYQPTGDQPQAIQQLVHGINTGERSQTLLGVTGSGKTFTMANVIQAVNKPTLVMS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E +NFFP NAVEYFVSYYDYYQPEAY+P T+ YIEK+ SIN++++++R Sbjct: 63 HNKTLAAQLYGELRNFFPENAVEYFVSYYDYYQPEAYIPATNVYIEKDLSINDELEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL R D I+V+SVSCIYGIG+ E + + I++L++G+ + + +LL + V Y R Sbjct: 123 RATSALLTGRRDVIIVASVSCIYGIGNPEEFGKNILRLQVGERIARNKLLLNFVDMLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + RG FRV GD+I+IF ++ D A+R +G++IE I P TGQK+ + I Sbjct: 183 NEQEFSRGHFRVKGDTIDIFLAY-ADYAYRFLFWGDEIEAIHSIDPNTGQKLSEERQVLI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT + TL A+ I+++L ++ E EGR EA+R+++R DLEM+ G C Sbjct: 242 FPANLFVTSKDTLQQAIHEIQDDLVAQIKFFENEGRFDEAKRIQERTELDLEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG P L +Y P+D LL +DESHVTIPQI M+ GD RK L + Sbjct: 302 SGIENYSRYFDKRQPGMRPFCLVDYFPKDYLLMIDESHVTIPQIRAMWGGDRARKVNLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 FRLP+ +DNRPL F E+ L I VSATP +EL +G++VEQ+IRPTGL+DP + Sbjct: 362 NAFRLPAALDNRPLNFNEFETLINQVIFVSATPSDYELRHSEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +E+ ++ R+L+T LTKRMAE+LT+YL ++ Y+HSE+KTL Sbjct: 422 EVRPSLNQIDDLLNEVADRIKKKERVLITTLTKRMAEELTKYLERAGVKCSYIHSEIKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I+RDLRLG DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+QTIGRAA Sbjct: 482 ERIDILRDLRLGVIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + KVI+YADTITKS++ AIDET+RRR Q+E+N KHNI P+SV + +++ + Sbjct: 542 RNEDGKVIMYADTITKSMETAIDETSRRRSIQMEYNLKHNITPRSVHKSREAILEQTKVG 601 Query: 740 DAATT---------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D +++ D + + + +++ K+M AAD L+F EA R+++E+ Sbjct: 602 DTPQAAQYYVEKEPSVAADPIIPYMRRDELDKLIQATEKKMLAAADKLDFIEAERLKNEL 661 Query: 791 KRLK 794 + LK Sbjct: 662 EALK 665 >gi|330508505|ref|YP_004384933.1| excinuclease ABC subunit B [Methanosaeta concilii GP-6] gi|328929313|gb|AEB69115.1| excinuclease ABC, B subunit [Methanosaeta concilii GP-6] Length = 658 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/658 (50%), Positives = 449/658 (68%), Gaps = 27/658 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P G QP AI QL+ G+ E+ Q L+GVTGSGKT+T+A VI +Q+P +V+ Sbjct: 18 FRLHSSFAPCGSQPEAIDQLVLGLQRNERFQTLIGVTGSGKTYTVANVISQVQKPTLVIV 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+EFK FFP N VEYF+SYYDYYQPE+Y+P D YIEK+S IN +I++MR Sbjct: 78 HNKTLAEQLYNEFKEFFPDNRVEYFISYYDYYQPESYIPSKDQYIEKDSLINPKIEQMRL 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T SLL R D IVV+SVSCIYG+G+ E++ M +LK+ + + +K++L LV Y+R Sbjct: 138 ATTASLLSRRDVIVVASVSCIYGLGNPENFQSMGFELKVNERISRKDILERLVDILYERS 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + G FRV G++I+I P + ++ R+ +FGN +E ISE +TG+++ ++ +Y Sbjct: 198 DLDLSPGRFRVNGETIDIIPGYFNNI-IRIELFGNKVERISEVDRITGKRVEDMSYFFVY 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYV P L A+ IK EL RL EL ++EA RL QR +D+EM+E TGSC+ Sbjct: 257 PARHYVIPENELKAAVDSIKAELNERLQELG----MIEAHRLRQRTMHDMEMIEETGSCK 312 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R PGEPP L +Y P+D LL +DESH T+PQ+ M RGD RK L +Y Sbjct: 313 GIENYSRHFDRRQPGEPPYCLIDYFPDDFLLIIDESHQTLPQLRAMNRGDRSRKKNLVDY 372 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +ELE + VEQIIRPTGL+DP VE Sbjct: 373 GFRLPSSYDNRPLDFEEFERFMRNVIFVSATPGDYELEHSKSP-VEQIIRPTGLLDPEVE 431 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+DV EI+ +G R L+T LTKR+AE+LT+YL + +IR RY+HSE++ LE Sbjct: 432 VRPIDGQVKDVMTEISGVISRGDRALVTTLTKRLAEELTDYLSQNDIRARYLHSEIQPLE 491 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR + SLIQTIGRA+R Sbjct: 492 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDEKSLIQTIGRASR 551 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDPI 736 N NS+V+LYAD +T SI+ A++ T RRR Q+ +N++H I PQ++K EK++E+ D Sbjct: 552 NANSRVVLYADRMTGSIKKAMETTERRRSLQMAYNQEHGIIPQTIKKPIREKVVEITDTR 611 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + N I+ L +M AA+ L FE A ++RD ++RL+ Sbjct: 612 HIPKSDIPNAIIE-----------------LEAEMMAAAERLEFERAIQLRDTVRRLE 652 >gi|189219825|ref|YP_001940466.1| excinuclease ABC subunit B, helicase [Methylacidiphilum infernorum V4] gi|189186683|gb|ACD83868.1| Excinuclease ABC subunit B, helicase [Methylacidiphilum infernorum V4] Length = 691 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/655 (51%), Positives = 449/655 (68%), Gaps = 7/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQ AI +L +GI + +K Q+LLGVTGSGKTFT+AK IE +Q+P +V+ Sbjct: 10 FKVVSPFEPCGDQGKAIDELSRGIKAGKKHQVLLGVTGSGKTFTIAKCIEKVQKPTLVIC 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE+K FFP +AVEYFVSY+DYYQPEAY+P TDTYIEK+SS+N +I+R+R Sbjct: 70 HNKTLAAQLYSEYKQFFPDSAVEYFVSYFDYYQPEAYIPSTDTYIEKDSSVNTEIERLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D IVV+SVSCIYG+GS E Y + Q+++G ++ + + L+ LV+ Y+R Sbjct: 130 SATNSLLTRRDVIVVASVSCIYGLGSPEDYESLCCQVEVGQNISRNQFLAMLVEMLYERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD +EI H+ D R+ FG+ I+ I+EF LTG+ + ++ I Sbjct: 190 DLQLTRGKFRVRGDVVEI--CHVSPDRGLRIEFFGDRIDRITEFELLTGRSLCRLQKELI 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SH+VT L A+ I+ EL R+ ELE +G+LLEAQRL R DLEMLE G C Sbjct: 248 FPASHFVTTSEKLKRAIGSIRRELDERIAELESKGKLLEAQRLRLRTENDLEMLEELGFC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L+GR G P TL ++ PED L +DESH TIPQI GMY GD RK TL E Sbjct: 308 NGIENYSRHLSGRPAGSAPYTLLDFFPEDFLTVIDESHATIPQIQGMYEGDMSRKRTLVE 367 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL F E+ I VSATPG +EL Q G ++EQIIRPTGL+DP V Sbjct: 368 HGFRLPSALDNRPLSFSEFEAKIGQVIYVSATPGEYELRQTGGQVIEQIIRPTGLLDPEV 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++DV E + ++G R+L+ LTK+ AEDL++YL E +VRY+HSE+ + Sbjct: 428 EVRPLEGQIDDVIKESSRRIKEGQRVLVLTLTKQTAEDLSDYLRELGFKVRYLHSELDAI 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LR G FDVLVGINLLREGLD+PE LV ILDADKEG+LRS+ SLIQ GRAA Sbjct: 488 ERVEILRGLRAGDFDVLVGINLLREGLDLPEVSLVCILDADKEGYLRSEKSLIQIAGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R+ KVILYAD +T+SI+ I T RR KQL++N++H + P+ V+ K + + ++ Sbjct: 548 RHEKGKVILYADVMTQSIKKLIAVTNYRRAKQLQYNEEHGVTPRGVRAKELVSLHGLIRS 607 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D Q +K +K L M A+ L FE+AA RD+I+ LK Sbjct: 608 EEKEIVHFKDTQ----AKMDYMELIKELGAAMIEASAKLEFEKAALFRDQIEELK 658 >gi|268680222|ref|YP_003304653.1| excinuclease ABC subunit B [Sulfurospirillum deleyianum DSM 6946] gi|268618253|gb|ACZ12618.1| excinuclease ABC, B subunit [Sulfurospirillum deleyianum DSM 6946] Length = 658 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/659 (50%), Positives = 462/659 (70%), Gaps = 7/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y PSGDQP AI +L I + Q L+GVTGSGKT+TMA++I+ ++ P ++M Sbjct: 4 FFLESPYQPSGDQPRAIERLSASIKKGNRYQTLIGVTGSGKTYTMAQIIQKLKMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR+D +IEK+SSINE+++R+R Sbjct: 64 HNKTLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D I V+SVS YG+G+ Y +M+ ++ G+S+ QK+LL LV YKR Sbjct: 124 SATASLLSYDDVICVASVSANYGLGNPHEYKKMVQIIEKGESINQKKLLLRLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++IFP++ E+ A RV FG+++E I F +K++++ + +Y Sbjct: 184 DTFFDRGCFRVSGDVVDIFPAYNEEEAIRVEFFGDEVESIYYFDVFLNKKLQSLPKVVLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A+K I++EL RL +KE +L+E QRL+QR+ +DLEML++TG+C+ Sbjct: 244 AANQFIVGHERLQKAIKSIEQELDERLAYFQKEDKLVEYQRLKQRVEFDLEMLQSTGACK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+RYLTG PG P +LF+Y + ++ L+ VDESHV++PQ GM+ GD RK L Sbjct: 304 GVENYARYLTGIEPGATPYSLFDYFEAMGKEYLVIVDESHVSLPQFRGMFAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL F+E+ P + VSATP EL + EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKAPRYLFVSATPKELELGLSGENVAEQIIRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VEI S++ QVE +YD I + ++L+TVLTK+MAE+LT Y + ++++YMHS++ Sbjct: 424 EVEILSSKNQVETLYDRIKEVTCKDEKVLVTVLTKKMAEELTRYYADLGMKIKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR LR+G+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNQIIRSLRVGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN+N +V+++A+ IT S+Q AI+ T RRR Q N++H I P S K+ E + L Sbjct: 544 AARNLNGRVLMFAEKITDSMQKAIETTLRRRALQEAFNQEHGITPTSTTRKMDENLK--L 601 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 E + N ++ S+K K + L K MH AA L FE+AA++RD+I++LK + Sbjct: 602 EEHSDIYNTYDKKDKIPPSEK--KKIIAELTKAMHEAAKILEFEKAAKLRDQIEKLKKA 658 >gi|150006946|ref|YP_001301689.1| excinuclease ABC subunit B [Parabacteroides distasonis ATCC 8503] gi|255016032|ref|ZP_05288158.1| excinuclease ABC subunit B [Bacteroides sp. 2_1_7] gi|256842055|ref|ZP_05547560.1| excinuclease ABC, B subunit [Parabacteroides sp. D13] gi|149935370|gb|ABR42067.1| excinuclease ABC, B subunit [Parabacteroides distasonis ATCC 8503] gi|256736371|gb|EEU49700.1| excinuclease ABC, B subunit [Parabacteroides sp. D13] Length = 673 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA L +GI S Q LLGVTGSGKTFT+A VI+ +QRP ++++ Sbjct: 3 FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSC+YG+ ++++ + L+ G +++ +LL V Y Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G FRV GD+++IFP+ + +A+R+ + ++I+ IS F PLTG++ + + Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + +N A+ I +L ++ L++ G+ EA+RL +R+T+DLEM+ G Sbjct: 243 NIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G+ P L +Y P+D LL VDESHVTIPQI MY GD+ RK L Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKKNL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS MDNRPL F+E+ L P I VSATP +EL + +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +++R + Q++D+ +EI + + R+L+T LTKRMAE+LT Y+ +R Y+HS+V Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER++I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733 AARNVN KVI YAD IT S+Q +DET RRREKQ+ +N+ H I P+ V + + ++ Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602 Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +P + + ++ Q +++ + + ++ RKQM AA L+F EAA+ RDE+ Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661 Query: 791 KRLK 794 +L+ Sbjct: 662 VKLE 665 >gi|320535927|ref|ZP_08035995.1| excinuclease ABC subunit B [Treponema phagedenis F0421] gi|320147231|gb|EFW38779.1| excinuclease ABC subunit B [Treponema phagedenis F0421] Length = 662 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/658 (50%), Positives = 455/658 (69%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY PSGDQP AI QL G+ + ++ Q L GVTGSGKTFTMA +I+A+Q+P ++++ Sbjct: 4 FELISDYAPSGDQPEAIRQLADGVLAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP D YIEK++SIN++IDR+R Sbjct: 64 HNKTLAAQLYREFKGFFPHNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVVS+VSCIYG+G ES+ + + ++ G +V+ + L LV QY+R Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDMENLKRQLVSLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FR+ GD +E+FP+++E+ A+R+ +I I F+P++G+ E + IY Sbjct: 184 DAVLERGRFRLKGDVLEVFPAYMEE-AYRIEFDWEEIVRIRRFHPISGEISTEFEELSIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V + TA+ I++EL RL L + +LLEA+RL+ R YD+EML G C Sbjct: 243 PAKHFVLKEDAIPTALVRIRKELNDRLAVLRAQNKLLEAERLKTRTEYDIEMLSEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + R PGEPP TLF Y P+D LLF+DESHVT PQ+ MY GD RK L ++ Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQVGAMYEGDRSRKQNLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPL+ E+ + I VSATPG E+ Q IVEQ+IRPTGL+DP +E Sbjct: 363 GFRLPCALDNRPLKINEFESMLNQAIFVSATPGPKEI-QYSTRIVEQLIRPTGLLDPILE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + + Q+ED+Y EI G R L+ LTK+MAEDLT+YL ++V+Y+HSE++T+E Sbjct: 422 VHKSEGQMEDIYREIQKRIVVGERSLILTLTKKMAEDLTDYLLGLGLKVKYIHSEIETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI++ LR G+FDVL+GINLLREG+D+PE + ILDADK GFLRS TSLIQ +GRAAR Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737 N N KVI+Y+D I+ +++ I ET RRR Q +N H I P+++K+ I +++ + + Sbjct: 542 NENGKVIMYSDRISDAMRETITETERRRSIQQAYNAAHGITPKTIKKAIEDILVRENELK 601 Query: 738 LEDA-ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E A A T I++ L + + K +K L +QM AD L FEEAA +RD+I+ +K Sbjct: 602 KEAAQAETEPLINSFNLLVPADRKKL-IKKLEQQMSAFADELRFEEAAAVRDKIEEIK 658 >gi|242310406|ref|ZP_04809561.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489] gi|239522804|gb|EEQ62670.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489] Length = 658 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/662 (50%), Positives = 460/662 (69%), Gaps = 15/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI +L I + Q L+GVTGSGKTF+MA +I+ +Q P ++M Sbjct: 4 FVLNSSYKPAGDQPQAIEKLSGFIKDGSQYQTLIGVTGSGKTFSMAHIIQELQMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSIN++++R+R Sbjct: 64 HNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IVV+SVS YG+G+ + Y +MI + ++G+S QK +L LV+ YKR Sbjct: 124 SATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEVGESYHQKSMLLRLVEMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ ++I+P++ ED R+ FG+++E+I+ + + IRN+E+ +Y Sbjct: 184 DSFFDRGDFRVNGEVVDIYPAYSEDEVVRLEFFGDELEKITILDSIDKKPIRNLESFVLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A+K I++EL RL +KE +++E +RL+ R +DLEM+E+TG C+ Sbjct: 244 AANPFIVGADRLKIAIKSIEKELAERLDFFKKENKMVEYERLKSRTEFDLEMIESTGICK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P +L +Y + + LL VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGKKPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL++EE+ P + VSATP ELE + I EQ+IRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSKNHIAEQLIRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+ S QVE +YDE +G ++L+T LTK+MAE+LT Y + ++VRYMHSE+ Sbjct: 424 IYEVLSVENQVEVLYDEAKKVIARGEKVLVTSLTKKMAEELTRYYSDLGLKVRYMHSEID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IIR LR+G+FD+LVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734 AARNVN +V+L+AD IT S++ A++ T RR KQ N+ HNI PQSV K+ E + Sbjct: 544 AARNVNGRVLLFADKITPSLKKAMEVTDYRRAKQEAFNQAHNITPQSVSRKLDENLKNQD 603 Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 +L E A ++ L +K L K+MH AA L+FEEAAR+RDEI ++ Sbjct: 604 LGMLYEKAKKKEKMPKIEREKL--------VKELTKKMHEAAKRLDFEEAARLRDEIAKM 655 Query: 794 KS 795 +S Sbjct: 656 RS 657 >gi|193214950|ref|YP_001996149.1| excinuclease ABC subunit B [Chloroherpeton thalassium ATCC 35110] gi|193088427|gb|ACF13702.1| excinuclease ABC, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 684 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/670 (48%), Positives = 466/670 (69%), Gaps = 15/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI +L +G+ +K Q LLGVTGSGKTF+++ VI + +P +V++ Sbjct: 10 FELSCPYSPAGDQPKAIKELTEGVLRGDKHQTLLGVTGSGKTFSISNVIANVNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYF+SYYD+YQPEAY+P TD YI K+ IN++IDR+R Sbjct: 70 HNKTLAAQLYGEFKQFFPNNAVEYFISYYDFYQPEAYLPSTDKYIAKDFRINDEIDRLRL 129 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT ++L R D I+VSSVSCIYG+GS + ++ I+ L+ G ++ELL+ LV Y R Sbjct: 130 RATSAVLSGRKDVIIVSSVSCIYGLGSPDEWASQIIFLETGMEKSRRELLNELVSIHYTR 189 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ ++RG FRV GD I+I P++ ED R+ FG++I+ + F TG V I Sbjct: 190 NDVELVRGKFRVRGDIIDIVPAY-EDYGVRIEFFGDEIDRLQLFEIKTGDVFEEVSDFAI 248 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +VT L+ +K I++EL RL L E +L+EAQRLE+R YD+EM++ G C Sbjct: 249 YPAKQFVTMEENLHKGIKAIEKELASRLNVLRSEDKLVEAQRLEERTRYDIEMMKELGYC 308 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEY-IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 +ENYSR+L+GR GE P L +Y I D L+ +DESHVT+PQI MY GD RK+ L Sbjct: 309 SGVENYSRHLSGRGEGEKPYCLLDYFIDNDYLVVIDESHVTLPQIRAMYAGDRSRKSILV 368 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRPL+FEE+ + P TI VSATPG +EL+Q G++VEQIIRPTGL+DP Sbjct: 369 EHGFRLPSALDNRPLKFEEFQAMTPQTIYVSATPGDYELQQSGGVVVEQIIRPTGLLDPS 428 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +++R + Q++D+ EI + A+ G +IL LTKRM+EDL +YL + +R +Y+HSE+K+ Sbjct: 429 IDVRPVKNQIDDLLAEIRMRAKIGEKILTMTLTKRMSEDLQDYLEKVGVRSQYLHSEIKS 488 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+R++I+R+LR+G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLR K SL+Q GRA Sbjct: 489 LDRVQILRELRMGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRDKKSLLQISGRA 548 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N KVI YAD +T+S++ I+ET RRR Q+ +N+ + I P+++ + + +V+ + Sbjct: 549 ARNSNGKVIFYADKMTESMRAVINETERRRAIQIAYNEANGIVPKTIHKSLEQVMTSTSV 608 Query: 739 EDA------ATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 DA A + + L ++K++ A + + ++M AA+ ++E+AA + Sbjct: 609 ADAQRRQKRARMQVESGVENLLEEVIEKMTKEEKLAMIDQMTEEMVDAAERTDYEKAAYL 668 Query: 787 RDEIKRLKSS 796 RDEI+RL+++ Sbjct: 669 RDEIRRLQNA 678 >gi|332886177|gb|EGK06421.1| UvrABC system protein B [Dysgonomonas mossii DSM 22836] Length = 673 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/664 (50%), Positives = 457/664 (68%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQPAAIA L +G+ Q LLGVTGSGKTFT+A VI+ + +P +V++ Sbjct: 3 FKLTSNYSPTGDQPAAIAALSEGVLQDIPFQTLLGVTGSGKTFTVANVIQNVDKPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T+TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYSEFKTFFPDNAVEYFVSYYDYYQPEAYIPSTNTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + T SLL R D IVVSSVSC+YG+G+ E + + LK+G + + L SLV Y R Sbjct: 123 ATTTSLLSGRRDIIVVSSVSCLYGMGNPEDFESSTISLKVGQKIVRDVFLRSLVSALYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ G FRV GD++++F ++ + + RV +G++IE I PLTG KI + +I Sbjct: 183 NEVDPKAGNFRVKGDTVDVFLAYGDPIV-RVVFWGDEIESIECLDPLTGIKIDSYNDFRI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + ++ A+ I+ +L ++ + G+ LEA+RL +R+TYDLEM+ G C Sbjct: 242 YPANLFVTTKDRMDRAIGEIEIDLGRQVEFFQSIGKPLEAKRLYERVTYDLEMIREVGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG P L ++ P+D LL VDESHVTIPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDNRKPGTRPFCLLDFFPDDFLLVVDESHVTIPQIRAMYGGDHSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL+FEE+ L P TI VSATP +EL + +G+IVEQ+IRPTGL+DPP+ Sbjct: 362 YGFRLPAALDNRPLKFEEFESLVPQTIYVSATPADYELLKSEGVIVEQLIRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI + +Q R L+T LTKRMAE+LT YL I Y+HS+V TL Sbjct: 422 DVRPSLNQIDDLMEEIQMRVEQNERTLVTTLTKRMAEELTNYLSNNGISCSYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RI+I+ LR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 DRIQIMDSLRTGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI YAD IT S+ I+ET RRREKQ+ +N++H I P+ +++ V E Sbjct: 542 RNVNGKVIFYADKITDSMAKTINETNRRREKQMAYNEEHGIVPKQIQKARTSVFTQRKGE 601 Query: 740 DAA---------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 D+A +I+ + Q +S ++ K + +KQM AA L F EAA+ RD++ Sbjct: 602 DSAIPQPYSQDSILSIASEDQMQYMSAEELKKAIAKAKKQMSAAAKKLEFLEAAQYRDQV 661 Query: 791 KRLK 794 +L+ Sbjct: 662 IKLE 665 >gi|322368181|ref|ZP_08042750.1| excinuclease ABC subunit B [Haladaptatus paucihalophilus DX253] gi|320552197|gb|EFW93842.1| excinuclease ABC subunit B [Haladaptatus paucihalophilus DX253] Length = 685 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/656 (50%), Positives = 452/656 (68%), Gaps = 7/656 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ + P+GDQP AI QL +G + Q LLGVTGSGKT T++ IE +Q+P +V Sbjct: 18 TDFRVDAPFDPAGDQPEAIEQLAEGFDEGMEKQTLLGVTGSGKTNTVSWTIEEVQKPTLV 77 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SINE+IDR+ Sbjct: 78 IAHNKTLAAQLYEEFRNLFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINEEIDRL 137 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSATRSLL R+D IVV+SVS IYG+G ++Y M ++L++G+ + + ELL+ LV Y Sbjct: 138 RHSATRSLLTRDDVIVVASVSAIYGLGDPQNYEDMRLRLEVGEEIGRDELLARLVDLNYD 197 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ +GTFRV GD++EIFP + A RV ++G++I+ I + PL G+ + Sbjct: 198 RNDMDFTQGTFRVRGDTVEIFPMYGR-YAVRVELWGDEIDRIVKIDPLEGEVKSQEPAVL 256 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ HY P T+ A+ I+E+L+ R+ E+ G L+ AQR+E+R T+DLEM++ G Sbjct: 257 VHPAEHYSIPEETMAEAIAEIEEDLERRIRYFERNGDLVAAQRIEERTTFDLEMMKEAGY 316 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYS Y T R G+ P TL +Y P+D L +DESH T+PQI G + GD RK +L Sbjct: 317 CSGIENYSVYFTEREVGDAPYTLLDYFPDDFLCVIDESHQTVPQIRGQFAGDKSRKDSLV 376 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRLP+ DNRPL FEE+ T+ +SATP +E EQ + IVEQI+RPT LVDP Sbjct: 377 ENGFRLPTAYDNRPLTFEEFEEKSAKTLYISATPADYEREQSEQ-IVEQIVRPTHLVDPK 435 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+ A Q++D+ I+ ++ R+L+T LTKRMAEDLTEYL E + V YMH E T Sbjct: 436 VEVADASGQIDDLMARIDDRIERDERVLVTTLTKRMAEDLTEYLEEAGVAVEYMHDETDT 495 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER E++R LRLG+FDVLVGINLLREGLDIPE +VAILDAD++GFLRS+T+L+QT+GRA Sbjct: 496 LERHELVRGLRLGEFDVLVGINLLREGLDIPEVSMVAILDADQQGFLRSETALVQTMGRA 555 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN +V+LYAD +T +++ A+DET RRR Q E N++H PQ++++ + E P Sbjct: 556 ARNVNGEVVLYADEVTDAMESAMDETGRRRRIQREFNEEHGYEPQTIEKAVSEANLP--- 612 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T+ + + ++ + L +M AA+NL FE AA IRD I+ L+ Sbjct: 613 --GSKTDTGGVTRNSPETDEEALEQISRLEDRMEEAANNLEFELAADIRDRIRELR 666 >gi|150400336|ref|YP_001324103.1| excinuclease ABC subunit B [Methanococcus vannielii SB] gi|150013039|gb|ABR55491.1| excinuclease ABC, B subunit [Methanococcus vannielii SB] Length = 649 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/660 (50%), Positives = 459/660 (69%), Gaps = 29/660 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++++D+ P G QP+AI +L+ + + Q LLGVTGSGKTFT+A VIE +++P +V Sbjct: 6 FRLKSDFEPKGSQPSAIDKLVFDLTKNPENSKQTLLGVTGSGKTFTIANVIEKVKKPTLV 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M Sbjct: 66 IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R A+ ++L R D I+V+SVSCIYG+GS + + +M +LK G +++ E++ LV QY+ Sbjct: 126 RLRASSAILSRRDVIIVASVSCIYGLGSPKLFKEMGFELKKGSKIKRAEIIEKLVDIQYE 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D ++ G FRV GD+I+I P + +D R+ +FG++I+ I E K + + Sbjct: 186 RNDTELVSGRFRVKGDTIDIIPGY-QDETIRLELFGDEIDRIYELDSKNMTKKHELASFY 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y H+VT + A+K I +EL L LE +L+A RL+Q+ YD+EM+E TGS Sbjct: 245 MYPAKHFVTTEESKKNAIKSILKELDEWLPHLE----MLKANRLKQKTLYDIEMIEETGS 300 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSR+ R EP L +Y P+D L+ +DESH TIPQI GMY+GD RK +L Sbjct: 301 CKGIENYSRHFENRGENEPAYCLLDYFPDDFLIVIDESHQTIPQIRGMYKGDRSRKKSLI 360 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS DNRPL+FEE+ I VSATPG +ELE+ I VEQIIRPTGL+DP Sbjct: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELEKSNQI-VEQIIRPTGLLDPK 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VEIR + QVED+ +E ++G R+L+T LTKR++E+LTEYL ++N++ RY+HS++ T Sbjct: 420 VEIRPIKGQVEDIINETEKMVKRGERVLITTLTKRLSEELTEYLAQKNVKARYLHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+ SLIQTIGRA Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734 ARN NSKV+LYAD IT SIQ A+ ET RRR+ Q E+N KH+I P++ +++K+++++D Sbjct: 540 ARNANSKVVLYADKITDSIQKAVFETKRRRKIQEEYNIKHDITPKTIVKPIRDKVVDIVD 599 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + N+ ++ L +M+LAA+ L FE A +IRD+I +LK Sbjct: 600 IKHIPKSEIPNVIVE-----------------LESEMYLAAEALEFERAIQIRDKIAKLK 642 >gi|260773212|ref|ZP_05882128.1| excinuclease ABC subunit B [Vibrio metschnikovii CIP 69.14] gi|260612351|gb|EEX37554.1| excinuclease ABC subunit B [Vibrio metschnikovii CIP 69.14] Length = 600 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/596 (54%), Positives = 433/596 (72%), Gaps = 17/596 (2%) Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 K+FFPHNAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR SAT++LLER D Sbjct: 1 MKSFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNSHIEQMRLSATKALLERKDA 60 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 I+V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R D+ RG FRV Sbjct: 61 IIVASVSAIYGLGDPDSYLKMMLHLRRGDVLNQRDMLRRLAELQYSRNDVAFERGQFRVR 120 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKIYANSHYVTPRPT 391 G+ I+IFP+ E A RV MF ++IE IS F PLTG + R++ +Y +HYVTPR Sbjct: 121 GEVIDIFPAESEQEAVRVEMFDDEIECISLFDPLTGVIRQRDLARFTVYPKTHYVTPRER 180 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 + A++ IK+EL++R L +LLE QR+ QR +D+EM+ G C IENYSRYL+G Sbjct: 181 ILDAIEQIKQELQLRRQTLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSG 240 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511 R+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK TL E+GFRLPS +DNR Sbjct: 241 RSAGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNR 300 Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571 PL+FEE+ L P TI VSATP ++ELE+ G +VEQ++RPTGL+DP +E+R TQV+D+ Sbjct: 301 PLKFEEFEALAPQTIFVSATPSAYELEKSAGDVVEQVVRPTGLLDPEIEVRPVATQVDDL 360 Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 EI + A + R+L+T LTKRMAEDLTEYL+E ++VRY+HS++ T+ER+EIIRDLRLG Sbjct: 361 LSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLG 420 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691 FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR++ K ILY D Sbjct: 421 VFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLRGKAILYGD 480 Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751 ITKS++ AIDET RRREKQ +N++ I PQ+++ I ++++ L DA ++ Sbjct: 481 NITKSMRKAIDETERRREKQQAYNQQRGIEPQALRRSIKDIME---LGDATKPKQQKASK 537 Query: 752 QLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L+K ++ + + L +M+ A +L FE AA+ RD+I +L+ Sbjct: 538 VVPLAKVAEPGASYDLLTPQQLEKQIMKLEAEMYKHAQDLEFELAAQKRDQITQLR 593 >gi|329765462|ref|ZP_08257038.1| excinuclease ABC subunit B [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137900|gb|EGG42160.1| excinuclease ABC subunit B [Candidatus Nitrosoarchaeum limnia SFB1] Length = 650 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/660 (50%), Positives = 454/660 (68%), Gaps = 20/660 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L++G+ R+ +Q LLGVTGSGKTF++A VI + +V++ Sbjct: 7 FELVSEFEPTGDQPQAIDLLVEGVKKRQ-IQTLLGVTGSGKTFSIANVIARTGKNTLVIS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP N V YFVSYYDYYQPE+Y+P+TDTYIEK++ INE+I+++R Sbjct: 66 HNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQINEKIEKLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT LL I+VS+VSCIY +G+ + + + + + GD +++ +L+ + +Y+R Sbjct: 126 EATAMLLSGEPTIIVSTVSCIYSLGNPKDWDDLAITINSGDVIKRSDLIKKFIDARYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I G FRV GD+I+I P++ ED+ R+SMFG+D+E+I ++ ++ R + IKI+ Sbjct: 186 DTEIAPGNFRVKGDTIDIIPAYSEDIV-RISMFGDDVEKIMLLDNISLKEKRKINQIKIF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY+ + A++ IK+EL+ RL EL + LE QRLE R YDLEM+E G C Sbjct: 245 PAKHYLIAKDVREKAVRSIKDELEKRLPELNE----LEKQRLEMRTKYDLEMIEELGYCS 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GRNPGE L ++ +D LL +DESHVT+PQ+ GMY+GD+ RK L Y Sbjct: 301 GIENYSRHFDGRNPGEKAFCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDYSRKKELVTY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ TI VSATP +E ++ I EQ++RPTGL+DP VE Sbjct: 361 GFRLPSAYDNRPLKFEEFEGYLKNTIFVSATPSEYE-KKISAQIAEQLVRPTGLLDPVVE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI A + R+L+T LTKRMAEDL EYL ++ +RVRYMHSE++ L+ Sbjct: 420 IRPTKDQMDDLIQEIAKRAVKNERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSEIEGLQ 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IR LRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLR+ TSLIQT GRAAR Sbjct: 480 RTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTFGRAAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN VI+YAD ITKS+ AIDET RR+EKQ+++NK+HNI PQ++ + + E I Sbjct: 540 NVNGSVIMYADNITKSMSNAIDETNRRKEKQIQYNKEHNITPQTIIKSVPEQI------- 592 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 ++D +L S + L QM ++ L+FE A RD IKRL+ F+ Sbjct: 593 -----TTLDESKLK-SIHDMTTDIIELESQMKKYSEELDFERAIECRDRIKRLEKEIKFK 646 >gi|150021713|ref|YP_001307067.1| excinuclease ABC subunit B [Thermosipho melanesiensis BI429] gi|149794234|gb|ABR31682.1| excinuclease ABC, B subunit [Thermosipho melanesiensis BI429] Length = 662 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/660 (50%), Positives = 463/660 (70%), Gaps = 14/660 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PSGDQP AI +L++G+ KVQ LLGVTGSGKTFTMAK++E + +P +V++ Sbjct: 3 FRVISDFKPSGDQPKAIKKLVEGLKKGYKVQTLLGVTGSGKTFTMAKIVEQINKPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK+FFP N VE+FVSYYDYYQPEAY+P D YIEK + INE I RMR Sbjct: 63 PNKTLAAQLYSEFKSFFPENKVEFFVSYYDYYQPEAYIPTKDLYIEKNADINEIISRMRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +S+L R D IVV+SVS IY G +S + +++IG ++ E L+ L K Y+R+ Sbjct: 123 SAIKSILTRKDVIVVASVSAIYNCGDPNDFSNLNYRVEIGQKLKIGEFLTHLAKIGYERK 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + +GTFR+ GD+IEIFPS+ +D ++ +FG++++EI F PL I ++ + IY Sbjct: 183 EEIDSKGTFRLKGDTIEIFPSYQDD-GIKIELFGDEVDEIFLFDPLNRSVIERLDKVIIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++T + A+K IKEEL+ +L+ K+G++LEA+RL+QR DLE+L G C Sbjct: 242 PTREFITSEEKILRAVKTIKEELEEQLVYFRKKGKILEAERLKQRTLNDLELLTALGYCT 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP +L +Y D L+F+DESH+TIPQ+ MYRGD+ RK L EY Sbjct: 302 GIENYSRHFDGREPGEPPYSLLDYFGNDYLIFIDESHITIPQLRAMYRGDYSRKKNLVEY 361 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLP DNRPLRFEE WN + I VSATPG +E++ Q IVEQIIRPTGLVDP V Sbjct: 362 GFRLPCAFDNRPLRFEEFWNKI-DKVIFVSATPGEFEIKNSQQ-IVEQIIRPTGLVDPEV 419 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + QV+D+ EI ++ R L+TVLTK+ AE L+EYL E I+ Y+HSE+ T+ Sbjct: 420 EVRPTKNQVDDLVGEILKVRKRNERALVTVLTKKTAERLSEYLVELGIKALYLHSELDTI 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+E+++ LR G +V+VG+NLLREGLD+PE LVAILD+D EGFLRS+T+L+Q IGR A Sbjct: 480 ERVEVLKKLRRGDIEVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLVQIIGRVA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-----KEKIMEVID 734 RN N +VI+YAD IT +++ AI+ET RRR+ Q+++N+++NI P+++ +E + +D Sbjct: 540 RNQNGRVIMYADRITPAMKRAIEETNRRRKLQMKYNERNNIKPKTIIKPLDEEIFKQFMD 599 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +I + + L++ + ++ L ++M+ AA L +E+AAR+RDE+ LK Sbjct: 600 NENELKEELESIFMLKESLTVEE-----YVAVLEEEMYKAASELRYEDAARLRDELFMLK 654 >gi|78777891|ref|YP_394206.1| excinuclease ABC subunit B [Sulfurimonas denitrificans DSM 1251] gi|78498431|gb|ABB44971.1| Excinuclease ABC subunit B [Sulfurimonas denitrificans DSM 1251] Length = 660 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/657 (52%), Positives = 447/657 (68%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L I + Q L GVTGSGKT TMA+VIE ++ P I+M Sbjct: 7 FKVVSPYQPAGDQPEAIKILSDSILKGNRYQALEGVTGSGKTHTMARVIENVKMPTIIMT 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP+N VEYFVSYYDYYQPEAY+PR D +IEK+S+IN++++R+R Sbjct: 67 HNKTLAAQLYSEFRQFFPNNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERLRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S+T +LL +D IVV+SVS YG+G E Y M+ + IGD + QK+LL LV+ Y R Sbjct: 127 SSTANLLSYDDVIVVASVSANYGLGDPEEYENMVQSVAIGDVIAQKKLLLRLVEMGYSRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G RV G+S++IFP + E A R+ FG++IE I F + +K+ + IY Sbjct: 187 DSYFDSGHIRVNGESLDIFPPYFEQEAIRIEFFGDEIEAIYTFDTIDNKKLEEHKQFTIY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S + + L A+K I+EEL RL +KEG+L+E QRL+QR+ +DLEML+TTG C+ Sbjct: 247 ATSQFSVRQEKLAVAIKRIEEELDDRLAYFKKEGKLVEHQRLKQRVEFDLEMLQTTGMCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR LT + GE P TL +Y ++ L+ VDESHV++PQ GMY GD RK L Sbjct: 307 GIENYSRLLTEKKIGEAPYTLLDYFALHHKEYLVIVDESHVSLPQYRGMYAGDRARKEVL 366 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL +E+ P + VSATP +ELE + EQIIRPTGL+DP Sbjct: 367 VEYGFRLPSALDNRPLMLDEYINKAPHYLFVSATPSKYELE-LSAVKAEQIIRPTGLLDP 425 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI+ + QVED++DEI + R+L+TVLTK+MAE LT+YL + IRV YMHS++ Sbjct: 426 VIEIKPSTNQVEDIHDEIKKITLKNERVLITVLTKKMAEALTKYLADLGIRVEYMHSDID 485 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T++R +IIR LR G+FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQTIGR Sbjct: 486 TIQRNQIIRSLRQGEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTIGR 545 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 ARN N +VILYA+ IT S+Q AID T RRE Q +HNK H I P + K+ E + Sbjct: 546 GARNSNGRVILYANKITTSMQKAIDTTNARREIQDKHNKIHGITPTTTIRKLDENLKVEE 605 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D N +D S + KA + L +M AA LNFEEAAR+RDEI ++K Sbjct: 606 YGDIYQKNKKMDKMPAS----ERKAMVTQLSLKMKEAARELNFEEAARLRDEIAKIK 658 >gi|320528723|ref|ZP_08029875.1| excinuclease ABC subunit B [Solobacterium moorei F0204] gi|320130933|gb|EFW23511.1| excinuclease ABC subunit B [Solobacterium moorei F0204] Length = 658 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/655 (49%), Positives = 443/655 (67%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA+L+ G+H+ +K Q+L G TG+GKTFTMA +I M RP +V + Sbjct: 6 FELVSPFKPTGDQPKAIAELVAGLHAGKKEQVLEGATGTGKTFTMANIIAQMNRPTLVFS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FPHN VE+FVS +DYYQPEAY+P++D YIEK ++INE++D R Sbjct: 66 HNKTLAGQLYSEFKELFPHNRVEFFVSNFDYYQPEAYMPKSDMYIEKTAAINEELDMFRE 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SLLER D IVV+SV+CIY Y M +++G+S+++ +L+ L++ QY R Sbjct: 126 STLNSLLERRDTIVVASVACIYAASDPVEYKNMFYTIRVGESIDRNDLMRRLIELQYSRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RGT RV GD I++ PS+ + R+ MFG +IE I+E PLTG+ + + I+ Sbjct: 186 DVDQTRGTIRVRGDIIDLTPSYTNEFNIRIEMFGEEIERITEIDPLTGKTMNAYQFYNIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y + T+ A I+ EL+ RL K+G+ LEA+RLEQR +DLE L G C Sbjct: 246 PASGYARSKETMLRACDAIEAELEDRLEYFRKKGKPLEAERLEQRTRFDLEALRENGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR G+ P LF+Y P+D LLFVDESHV++PQ+ GMY GD RK L EY Sbjct: 306 GIENYSMHIDGRKVGQRPWNLFDYFPKDFLLFVDESHVSLPQVRGMYNGDRQRKEVLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS ++NRP++F+E+ + I SATPG +ELE + EQIIRPTGL+DP + Sbjct: 366 GFRLPSALENRPMKFDEFQTMMNQVIYCSATPGDFELEAVDHHVTEQIIRPTGLLDPKIT 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ + ++ ++ R+L+T LT RMAEDLT YL ER ++ Y+H E KTLE Sbjct: 426 VKPTKGQIDDICEALDARLKRNERVLITTLTVRMAEDLTAYLKERGYKIAYLHHETKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IRDLRLGK D +VGINLLREGLDIPE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RTEVIRDLRLGKVDAIVGINLLREGLDIPEVSLVCILDADKEGFLRSHRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N +V +YAD +T S++ AI+ET RRR+ Q +N +H I P +VK+ + E I ++ Sbjct: 546 NANGEVYMYADVMTDSMRYAINETERRRKIQEAYNVEHGIIPTTVKKNVEEAIRGKETKE 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A + A+ LS+K + + +M AA +LNFE AA +RD + LKS Sbjct: 606 MAAKYMQKKAK---LSQKDKAKLIADMEVEMREAAASLNFERAAELRDILFELKS 657 >gi|301308772|ref|ZP_07214724.1| excinuclease ABC subunit B [Bacteroides sp. 20_3] gi|300833296|gb|EFK63914.1| excinuclease ABC subunit B [Bacteroides sp. 20_3] Length = 673 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA L +GI + Q LLGVTGSGKTFT+A VI+ +QRP ++++ Sbjct: 3 FEISSSFSPTGDQPEAIAALSEGIKNGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSC+YG+ ++++ + L+ G +++ +LL V Y Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G FRV GD+++IFP+ + +A+R+ + ++I+ IS F PLTG++ + + Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + +NTA+ I +L ++ L++ G+ EA+RL +R+T+DLEM+ G Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G+ P L +Y P+D +L VDESHVTIPQI MY GD+ RK L Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFMLVVDESHVTIPQIRAMYGGDYARKKNL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS MDNRPL F+E+ L P I VSATP +EL + +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +++R + Q++D+ +EI + + R+L+T LTKRMAE+LT Y+ +R Y+HS+V Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER++I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERVQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733 AARNVN KVI YAD IT S+Q +DET RRREKQ+ +N+ H I P+ V + + ++ Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602 Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +P + + ++ Q +++ + + ++ RKQM AA L+F EAA+ RDE+ Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661 Query: 791 KRLK 794 +L+ Sbjct: 662 VKLE 665 >gi|311748765|ref|ZP_07722550.1| excinuclease ABC subunit B [Algoriphagus sp. PR1] gi|126577300|gb|EAZ81548.1| excinuclease ABC subunit B [Algoriphagus sp. PR1] Length = 679 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/672 (50%), Positives = 477/672 (70%), Gaps = 22/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L +G+++ EK Q+LLGVTGSGKTFT+A +I+ +Q+P ++++ Sbjct: 3 FKLTSDYQPTGDQPKAIEKLSEGVNNGEKAQVLLGVTGSGKTFTIANLIQQVQKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P + TYIEK+ SIN++I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA+ SLL R D IVV+SVSCIYGIG+ E + + +++L+ GD + + +LL LV Y R Sbjct: 123 SASSSLLTGRRDVIVVASVSCIYGIGNPEEFGKNVIRLQEGDRIPRNQLLFKLVDILYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + GTFRV GD+++IF ++ D +R+ +G++IE I P +G+K+ + + I I Sbjct: 183 TQQDLTHGTFRVKGDTVDIFVAY-ADWGYRIFFWGDEIEAIQRIDPKSGKKLNDEKIISI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT + TL TA+ I+ ++ ++ EKEG+ +EA+RL++R +DLEM+ G C Sbjct: 242 FPANLFVTGKDTLQTAIHEIQHDMVAQVNFFEKEGKFMEAKRLQERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSRY R PG P L +Y P+D LL +DESHVT+PQ+ M+ GD RK L + Sbjct: 302 SGVENYSRYFDRREPGARPFCLIDYFPDDFLLVIDESHVTVPQVRAMWGGDRSRKVNLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+FEE+ L + VSATP +EL +G +VEQIIRPTGL+DP + Sbjct: 362 FGFRLPSALDNRPLKFEEFETLANQVVYVSATPADYELNLTEGEVVEQIIRPTGLLDPTI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R ++ Q++D+ +EI+ + R+L+T LTKRMAE+L +YL ++ RY+HSEVKTL Sbjct: 422 DVRPSQNQIDDLLEEIDQTIKTDARVLVTTLTKRMAEELQKYLERAGVKSRYIHSEVKTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+R+LRLG FDVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SL+QTIGRAA Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIM---EVI 733 RN +VI+YAD IT S+++AIDET RRR Q+ +N++H I P +V ++KIM +V Sbjct: 542 RNQEGRVIMYADKITPSMKMAIDETKRRRALQIAYNEEHGITPTTVIKSRDKIMGQTKVA 601 Query: 734 D----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 D P+ E+ N++ D LSK+K + + +KQM AA LNF EA Sbjct: 602 DSKRNPKVYAGPMPGEE----NMAADPVVQYLSKEKLEKLIVQTQKQMEKAAKELNFMEA 657 Query: 784 ARIRDEIKRLKS 795 AR+RDE + KS Sbjct: 658 ARLRDEWQSQKS 669 >gi|328948864|ref|YP_004366201.1| UvrABC system protein B [Treponema succinifaciens DSM 2489] gi|328449188|gb|AEB14904.1| UvrABC system protein B [Treponema succinifaciens DSM 2489] Length = 665 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/655 (48%), Positives = 467/655 (71%), Gaps = 7/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI +L +G +K Q L GVTGSGKTFTMAK+IEA+QRP ++++ Sbjct: 4 FHVVSPFEPSGDQPNAIKKLSEGFFRGDKYQTLKGVTGSGKTFTMAKIIEAVQRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L+AQLY EFK FFP NAVEYFVSYYDYYQPEAYVP D YIEK++SIN++ID++R Sbjct: 64 HNKTLSAQLYREFKTFFPDNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINKEIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT +L+ER D I+V++VSCIYG+G + Y +M + ++ G+ ++ E+ S L+ QY+R Sbjct: 124 AATYALMERRDVIIVATVSCIYGLGMPDLYKEMRIHVEKGNELDTHEIASRLISIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FR+ GD+IEIFP ++E D A+++ + + I I F ++G+ I ++ +++ Sbjct: 184 DMILERGKFRIKGDTIEIFPPYMETDEAYKIELDFDQISRIKRFNAISGETIEELDELQL 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y H+V PR + + + I+ EL RL EL G++LEA+RL+ R TYDLEM++ G C Sbjct: 244 YPAKHFVVPRDQMASVTEKIQTELDSRLEELRSAGKILEAERLKTRTTYDLEMMKEMGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS ++GR G+PP TL Y P+D L +DE+HV++PQI MY GD RK L + Sbjct: 304 SGIENYSGPISGRKRGDPPATLLHYFPDDFLCMIDEAHVSVPQIGAMYEGDRARKQNLID 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+ +E+ I V+ATP E+++ +VEQ+IRPTGL+DP + Sbjct: 364 FGFRLPSALDNRPLKIDEFTKKMNQVIFVTATPRPEEIKKSTQ-VVEQLIRPTGLLDPKI 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D++ E++ ++G R L+ LTK+MAEDLT+YL E N++V+Y+HSE+ T Sbjct: 423 EVRPSEGQMQDIFKEVSARIKKGERSLILTLTKKMAEDLTDYLSELNLKVKYIHSEIDTF 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++ LR G+ DVL+GINLLREG+D+PE L+AILDADK GFLRS TSLIQ IGRAA Sbjct: 483 ERVEILKSLRTGETDVLIGINLLREGIDLPEVSLIAILDADKIGFLRSTTSLIQIIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + V++YAD ++ +++ AIDET RRR Q +NK+H I P+++K+ + ++++ + Sbjct: 543 RNADGTVLMYADRMSDAMKEAIDETKRRRSIQEAYNKEHGIVPKTIKKAVEDILEHQKED 602 Query: 740 DAATTNISIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 NI ++A L ++K++ K L ++K+M AAD L++E+AA +RD+I Sbjct: 603 AEQEANIKLEALKNCTNLFVAKQRKKL-LDLMKKEMSEAADRLDYEQAAVLRDQI 656 >gi|225012707|ref|ZP_03703142.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-2A] gi|225003240|gb|EEG41215.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-2A] Length = 662 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/662 (49%), Positives = 460/662 (69%), Gaps = 13/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+GDQP AI +++ +++ L GVTGSGKTFTMA ++ +QRP +V+A Sbjct: 3 FKLVSDFKPTGDQPKAIEEIVNQFQNQDSFVTLQGVTGSGKTFTMANAVQQLQRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+++R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEDIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSC+YGIG+ + + ++ ++ + + +L+ LV+ Y R Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPAEFEKNVITIERDQVISRTQLMHRLVQSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RG FRV GD I++FP + D+A+++ FG++IE I F P+ ++ + + I Sbjct: 183 TTAEFSRGNFRVLGDIIDVFPGY-ADIAFKIHFFGDEIELIEAFDPINNSRLEQYDKVNI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A+ I+++L ++ ++ G+ LEA+RL +R +DLEM+ G C Sbjct: 242 YPANIFVTSPDIIQNAILQIQDDLVKQVDYFKEVGKHLEAKRLHERTEFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL GR PG P L +Y P D L+ VDESHVTI Q+ MY GD RK L E Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPNDFLMIVDESHVTISQVHAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L+ + VSATP +ELE+ +G VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFESLQNQVLYVSATPADYELEKTEGAFVEQIIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LT+YL IR RY+HS+V TL Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLSRAQIRCRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QTIGRAA Sbjct: 482 ERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K I+YAD ITKS+Q IDET RREKQ +N K++I P ++ + +D L + Sbjct: 542 RNIEGKAIMYADVITKSMQKTIDETNYRREKQNAYNVKNDITPTALNKS----LDSALAK 597 Query: 740 DAATTNIS-IDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 ++ +T+ + +++++++ L+K + + ++ LRK M AA +L+F EAA+ RD+IK Sbjct: 598 NSLSTHANELESRKVAEEANRYLTKPQIEKKIRELRKDMEKAAKSLDFIEAAKYRDDIKL 657 Query: 793 LK 794 L+ Sbjct: 658 LQ 659 >gi|85057679|ref|YP_456595.1| excinuclease ABC subunit B [Aster yellows witches'-broom phytoplasma AYWB] gi|123518201|sp|Q2NJ77|UVRB_AYWBP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|84789784|gb|ABC65516.1| excinuclease ABC subunit B [Aster yellows witches'-broom phytoplasma AYWB] Length = 667 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/655 (49%), Positives = 449/655 (68%), Gaps = 4/655 (0%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F++Q+ PSGDQP AI +L+ K Q+LLG TG+GKTFT+A +I+ +Q+ +V Sbjct: 5 NLFKLQSSLKPSGDQPQAIQKLVNNFKQGLKEQILLGATGTGKTFTIANIIQHLQQKTLV 64 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LA QLY+E K FP+N VEYF+SYYDYYQPEAYV +DTYIEK+S IN++ID++ Sbjct: 65 IAHNKTLAGQLYNELKAMFPNNRVEYFISYYDYYQPEAYVASSDTYIEKDSKINDEIDQL 124 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSA SL+ R+D IVV+SVSCIYG+G ++ Y + + L+IGD E+K L++ L++ +Y+ Sbjct: 125 RHSAAGSLINRDDVIVVASVSCIYGVGDLKDYQKSTLHLQIGDKYERKNLINKLIELKYQ 184 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R +I RGTFRV GD IEI S +++ R+ FGN+IE I FY L G+ I N++ I Sbjct: 185 RNEINFQRGTFRVRGDIIEIIASSSKEIGIRIIFFGNEIENIQNFYVLNGKAIANLKLIT 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ S Y T L ++K I++ELK ++ EK +LL AQ+++ R +DLEMLE G+ Sbjct: 245 LFPASLYATNNQKLQESIKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGN 304 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C +ENYSR+L + GE P TL ++ D L VDESHVTIPQI GMY GDF RK L Sbjct: 305 CNGVENYSRHLALKGKGEAPSTLIDFFGNDFLTIVDESHVTIPQIKGMYFGDFSRKNNLV 364 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPS +DNRPL+F E+ I +SATPG +EL + + IVEQIIRPT ++DP Sbjct: 365 NFGFRLPSALDNRPLKFNEFQEKMNKVIYLSATPGDYELTK-KIPIVEQIIRPTFVLDPE 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R Q++D+Y EI + RIL+T LT M+EDLT YL I+V Y+HSE+K+ Sbjct: 424 IEVRPTNNQMDDLYFEIKHQTKNNQRILITTLTINMSEDLTTYLKNLGIKVAYLHSEIKS 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 L+R+EI++DLRLGK+D LVG+NLLREGLD+PE LVAILDADK+GFLR++ SLIQTIGRA Sbjct: 484 LQRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN+ K I+YAD I+ ++Q+AI+ET RRR+ Q ++N+ + P ++ + I+E I Sbjct: 544 ARNITGKAIMYADCISPAMQIAIEETYRRRKIQKQYNETMKVTPTALNKTILETISIKQK 603 Query: 739 EDAATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 E Q Q++ + +K L+K M AA L+FE+AA +RD I Sbjct: 604 ERIKNEKGKSKVQKKLQINTNMTAKNKEIKRLQKTMKEAAKALDFEKAATLRDLI 658 >gi|289753720|ref|ZP_06513098.1| excinuclease ABC (subunit B-helicase) uvrB [Mycobacterium tuberculosis EAS054] gi|289694307|gb|EFD61736.1| excinuclease ABC (subunit B-helicase) uvrB [Mycobacterium tuberculosis EAS054] Length = 654 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/568 (58%), Positives = 423/568 (74%), Gaps = 1/568 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS SLIQTIGRAAR Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRR 708 NV+ +V +YAD IT S++ AIDET RRR Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRR 573 >gi|260654700|ref|ZP_05860190.1| excinuclease ABC subunit B [Jonquetella anthropi E3_33 E1] gi|260630716|gb|EEX48910.1| excinuclease ABC subunit B [Jonquetella anthropi E3_33 E1] Length = 681 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/655 (49%), Positives = 443/655 (67%), Gaps = 10/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++Q + P+GDQP AI++L +G+ ++ Q LLGVTGSGKTFT+A VI+ QRP +V+A Sbjct: 6 FRLQAPWPPAGDQPGAISRLTEGLLRGDRCQTLLGVTGSGKTFTVASVIQNFQRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P +D YIEK++SIN+QI+RMR Sbjct: 66 HNKTLAAQLYSEFKGFFPDNAVHYFVSYYDYYQPEAYLPGSDVYIEKDASINDQIERMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T+SL+ER D IVV+SVSCIYG+G E+Y +V +G+ +++ L SL+K Y+R Sbjct: 126 ATTKSLIERRDVIVVASVSCIYGMGKRENYEDAVVSFSVGERWKRRAFLESLMKSYYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + G FRV GD +E++P + D + R S F ++E I E P++G+ + E + ++ Sbjct: 186 DLDLSPGKFRVRGDVVELYPVY-SDKSLRFSFFDEELESIDEVEPISGKTVTRRERVSVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT + AM I+ EL+ RL + LEAQRLE R YD+EML G C Sbjct: 245 PAQHYVTSDNAVAEAMVKIRAELEERLEFFRSQKSFLEAQRLESRTKYDMEMLAEAGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL GR GE P TL ++ P D L+ VDESH+T+PQ+ GM+ GD RK L E+ Sbjct: 305 GIENYSRYLDGREAGEQPGTLLDFFPPDFLMVVDESHITLPQVRGMFNGDRARKEVLVEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL++ E+ I SATPG WE+++ +VEQ+IRPTG+VDP V Sbjct: 365 GFRLPSCLDNRPLKWNEFENFMQRVICCSATPGDWEIQRSSQ-VVEQVIRPTGVVDPEVF 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A QV+D+ DEI A + G R+L+T LTK+MAEDL EY + ++ +Y+HSE+ E Sbjct: 424 VRPASGQVDDLLDEIARATEAGGRVLVTTLTKKMAEDLAEYAGKLGVKAKYIHSELDAFE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R ++IR+LR G DVLVGINLLREG+D+PE LVAILDAD+EGFLRS SLIQ +GRAAR Sbjct: 484 RADLIRELREGSVDVLVGINLLREGIDMPEVTLVAILDADREGFLRSYRSLIQIMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N S+VILYADT T SI+ A E++RRR+KQLE NK H I P++V + + ++ Sbjct: 544 NTESRVILYADTQTDSIRQACAESSRRRQKQLEFNKAHGIVPRTVSKSVSRLL------- 596 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + + ++ + ++ K M + L FE+AA +RD + L++ Sbjct: 597 -PELEFEEAPEAAASKAEEEQMDCATIEKLMWESVKKLQFEKAAMLRDRLAELRN 650 >gi|262384314|ref|ZP_06077449.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_33B] gi|262294017|gb|EEY81950.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_33B] Length = 673 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA L +GI S Q LLGVTGSGKTFT+A VI+ +QRP ++++ Sbjct: 3 FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSC+YG+ ++++ + L+ G +++ +LL V Y Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G FRV GD+++IFP+ + +A+R+ + ++I+ IS F PLTG++ + + Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + +N A+ I +L ++ L++ G+ EA+RL +R+T+DLEM+ G Sbjct: 243 NIYPTNLFVTTQDRINMAIGQIDVDLGTQVNLLKEIGKPFEAKRLYERVTFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G+ P L +Y P+D +L VDESHVTIPQI MY GD+ RK L Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFMLVVDESHVTIPQIRAMYGGDYARKKNL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS MDNRPL F+E+ L P I VSATP +EL + +G++VEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +++R + Q++D+ +EI + + R+L+T LTKRMAE+LT Y+ +R Y+HS+V Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKNERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER++I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733 AARNVN KVI YAD IT S++ +DET RRREKQ+ +N+ H I P+ V + + ++ Sbjct: 543 AARNVNGKVIFYADKITASMRQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602 Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 +P + + ++ Q +++ + + ++ RKQM AA L+F EAA+ RDE+ Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661 Query: 791 KRLK 794 +L+ Sbjct: 662 VKLE 665 >gi|300709532|ref|YP_003735346.1| excinuclease ABC subunit B [Halalkalicoccus jeotgali B3] gi|299123215|gb|ADJ13554.1| excinuclease ABC subunit B [Halalkalicoccus jeotgali B3] Length = 686 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/664 (51%), Positives = 452/664 (68%), Gaps = 9/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI QL+ G S Q LLGVTGSGKT T++ +E +Q P +V+A Sbjct: 20 FRVEAPFEPAGDQPEAIEQLVSGYESGMDRQTLLGVTGSGKTNTVSWTVEGIQTPTLVIA 79 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +DTYI+K++SIN++IDR+RH Sbjct: 80 HNKTLAAQLYEEFRNLFPDNAVEYFVSYYDYYQPEAYVEASDTYIDKDASINDEIDRLRH 139 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G +Y M +QL+ G +++ ELL LV Y+R Sbjct: 140 SATRSLLTRDDVIVVASVSAIYGLGDPRNYVDMSLQLEQGQRIDRDELLKGLVDLNYERN 199 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++E+FP + A RV +G++I+ +S+ PL G + I+ Sbjct: 200 DVDFTQGTFRVRGDTVEVFPMYGR-YAVRVEFWGDEIDRLSKLDPLEGDLKSEEPAVLIH 258 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P + A+ I+E+L+ R+ E+ G +L AQR+E+R T+D+EM+ TG C Sbjct: 259 PAEHYSIPEQRMENAISEIEEDLEKRIRYFERNGDMLSAQRIEERTTFDIEMMRETGYCS 318 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS YL+ R G+ P TL +Y P+D L +DESH TIPQI G Y GD RK +L E Sbjct: 319 GIENYSVYLSDRESGDAPYTLLDYFPDDFLTVIDESHQTIPQIKGQYAGDKSRKDSLVEN 378 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ + VSATPG +E + + IVEQI+RPT LVDP V Sbjct: 379 GFRLPTAYDNRPLTFEEFEERVGKRLYVSATPGDYERDVSEQ-IVEQIVRPTHLVDPAVS 437 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++SA+ Q++D+ I+ + R+L+T LTKRMAEDLTEYL + V YMH E TLE Sbjct: 438 VQSAQEQIDDLMARIDERTDRDERVLVTTLTKRMAEDLTEYLENSGVGVEYMHDETDTLE 497 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IR LRLG+FDVLVGINLLREGLDIPE LVAILDAD++GFLRS+T+LIQT+GRAAR Sbjct: 498 RHELIRGLRLGEFDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSRTTLIQTMGRAAR 557 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +V+LYAD T ++ AI+ET RRRE Q E N+ H+ P ++ +++ E P D Sbjct: 558 NAEGEVVLYADETTDAMAEAIEETQRRREIQREFNEAHDYTPTTIDKEVSETNLPGSKTD 617 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T+ ++ DA + + +A ++SL ++M+ AA NL FE AA IRD I+ L+ F Sbjct: 618 --TSGVTGDAPE---DTEAAQARVQSLEERMNEAASNLEFELAADIRDRIRELREE--FD 670 Query: 801 GLDD 804 L D Sbjct: 671 ALSD 674 >gi|34540208|ref|NP_904687.1| excinuclease ABC subunit B [Porphyromonas gingivalis W83] gi|34396520|gb|AAQ65586.1| excinuclease ABC, B subunit [Porphyromonas gingivalis W83] Length = 678 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/668 (49%), Positives = 454/668 (67%), Gaps = 14/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + + P+GDQP AI QL++GI+ Q LLGVTGSGKTFT+A V+ A+ RP +V++ Sbjct: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R Sbjct: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D +VVSSVSC+YG+ + E++S+ ++ L G ++ + LV+ Y Sbjct: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G FRV GDS++IFP+ + VA+RV + ++E +S F P TG++ + + Sbjct: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 KIY + +VT + ++ A+ I +L ++ L++ G+ EA+RL +R+TYDLEM+ G Sbjct: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR+ GE P L +Y PED LL +DESHVTIPQI MY GD RK L Sbjct: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ +DNRPLRF+E+ L P T+ +SATP +EL + +G+IVEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++++ QV+D+ +EI ++ R+L+T LTKRMAE+L+EYL I Y+HS+V Sbjct: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER+ I+ DLR G +D L+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734 AAR+++ +VI YAD IT S+QL +DET RRR KQL +N+ H I PQ + + + D Sbjct: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602 Query: 735 PILLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 L+ + I+ + LSK K +A + S +KQM AA L+F EAAR+ Sbjct: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662 Query: 787 RDEIKRLK 794 RDE RL+ Sbjct: 663 RDEAARLE 670 >gi|257456400|ref|ZP_05621596.1| excinuclease ABC subunit B [Treponema vincentii ATCC 35580] gi|257446060|gb|EEV21107.1| excinuclease ABC subunit B [Treponema vincentii ATCC 35580] Length = 663 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/657 (50%), Positives = 448/657 (68%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ DY P+GDQ AI QL GI + ++ Q L GVTGSGKTFTMA +I+A+Q+P ++++ Sbjct: 4 FKLMADYQPAGDQGDAIRQLADGILAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP D YIEK++SIN++IDR+R Sbjct: 64 HNKTLAAQLYREFKGFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVVS+VSCIYG+G ES+ + + ++ G +V+ +L L+ QY+R Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDPGKLKKQLISLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RG FRV GD +E+FP+++E+ A+R+ +I I F PLTG+ + E + IY Sbjct: 184 DAVLERGRFRVKGDVMEVFPAYMEE-AYRIEFDWEEIVRIRRFNPLTGEVSQEYEELSIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P + A++ IK EL RL L+ +G+L EA+RL+ R YD+EML G C Sbjct: 243 PAKHFVMPENAIPNAIERIKRELDARLEVLKAQGKLFEAERLKTRTEYDIEMLSEMGYCP 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + R PGEPP TLF Y P+D LLF+DESHVT PQI MY GD RK L ++ Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQIGAMYEGDRSRKQNLVDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP +DNRPL+ E+ + I VSATPG EL Q +VEQ+IRPTGL+DP +E Sbjct: 363 GFRLPCALDNRPLKINEFEAMLNQAIFVSATPGPKEL-QYSTRVVEQLIRPTGLLDPLIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I + Q+E +Y E+ + R L+ LTK+MAEDLT+YL ++V+Y+HSEV+T+E Sbjct: 422 IHPSEGQMEHIYGEVKKRIAKDERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI++ LR G+FDVL+GINLLREG+D+PE + ILDADK GFLRS TSL+Q +GRAAR Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLVQIVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738 N N V++YAD I+ +++ I+ETTRRR Q +N H I P ++K+ I +++ + + Sbjct: 542 NANGSVVMYADRISDAMKETIEETTRRRSIQQAYNDAHGITPTTIKKSIEDILVREAEIK 601 Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +DAA + L+ K +K L QM AD L FEEAA IRD+I+ +K Sbjct: 602 KDAARAETEPLVNSFNILNPADRKKLIKKLEAQMAEYADMLLFEEAAVIRDKIEEIK 658 >gi|284166957|ref|YP_003405236.1| excinuclease ABC subunit B [Haloterrigena turkmenica DSM 5511] gi|284016612|gb|ADB62563.1| excinuclease ABC, B subunit [Haloterrigena turkmenica DSM 5511] Length = 687 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/664 (50%), Positives = 456/664 (68%), Gaps = 7/664 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P+GDQP AI QL +G Q LLGVTGSGKT T++ +IE +Q+P +V+A Sbjct: 21 FTVDAPFEPAGDQPEAIEQLAEGFRQGMDKQTLLGVTGSGKTNTVSWLIEEIQKPTLVIA 80 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SIN++IDR+RH Sbjct: 81 HNKTLAAQLYEEFRNLFPENAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINDEIDRLRH 140 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D IVV+SVS IYG+G +Y M ++L++G+ V + ELL LV Y+R Sbjct: 141 SATRSLLTREDVIVVASVSAIYGLGDPRNYVDMSMRLEVGEEVGRDELLKRLVDLNYERN 200 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++EI+P + A RV ++G++I+ + + PL G+ + + + ++ Sbjct: 201 DVDFTQGTFRVRGDTVEIYPMYGR-YAVRVELWGDEIDRMVKVDPLEGKTQGDQQAVLVH 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P TL AM I+ +L R+ E++G ++ AQR+E+R ++DLEM++ TG C Sbjct: 260 PAEHYSIPETTLEEAMDEIRTDLDKRISYFERQGDMIAAQRIEERTSFDLEMMQETGYCS 319 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS YL+ R G+ P TL +Y P+D L VDESHVT+PQ+ G Y GD RK +L E Sbjct: 320 GIENYSVYLSDRESGDAPYTLLDYFPDDFLTVVDESHVTLPQVRGQYAGDKSRKDSLVEN 379 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T+ VSATPG +E E+ IVEQI+RPT LVDP +E Sbjct: 380 GFRLPTAYDNRPLTFEEFQEKTNQTLYVSATPGDYEREESDQ-IVEQIVRPTHLVDPEIE 438 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A Q++D+ D I+ + R L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 439 VSPASGQIDDLMDRIDERIARDERTLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 498 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR LRLG+ DVLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRAAR Sbjct: 499 RHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 558 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD + +++ AI+ET RRR Q E+N++H + P ++++++ E P Sbjct: 559 NVNGEVVLYADDPSNAMESAIEETQRRRRIQQEYNEEHGLEPTTIEKEVGETNLP----- 613 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 + T + + + +++ + ++ L +M AA NL FE AA IRD I+ ++ Sbjct: 614 GSKTETTQVSGREIEDEEEAERYIAELEDRMDEAASNLEFELAADIRDRIREVREEFDLA 673 Query: 801 GLDD 804 G +D Sbjct: 674 GGED 677 >gi|188995449|ref|YP_001929701.1| excinuclease ABC subunit B [Porphyromonas gingivalis ATCC 33277] gi|188595129|dbj|BAG34104.1| excinuclease ABC B subunit [Porphyromonas gingivalis ATCC 33277] Length = 678 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/668 (49%), Positives = 453/668 (67%), Gaps = 14/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + + P+GDQP AI QL++GI+ Q LLGVTGSGKTFT+A V+ A+ RP +V++ Sbjct: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R Sbjct: 63 HNKTLAAQLYGEFKAFFPKNAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D +VVSSVSC+YG+ + E++S+ ++ L G ++ + LV+ Y Sbjct: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G FRV GDS++IFP+ + VA+RV + ++E +S F P TG++ + + Sbjct: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 KIY + +VT + ++ A+ I +L ++ L++ G+ EA+RL +R+TYDLEM+ G Sbjct: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR+ GE P L +Y PED LL +DESHVTIPQI MY GD RK L Sbjct: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ +DNRPLRF+E+ L P T+ +SATP +EL + +G+IVEQ+IRPTGL+DP Sbjct: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++++ QV+D+ +EI ++ R+L+T LTKRMAE+L+EYL I Y+HS+V Sbjct: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER+ I+ DLR G +D L+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734 AAR+++ +VI YAD IT S+QL +DE RRR KQL +N+ H I PQ + + + D Sbjct: 543 AARHIHGRVIFYADKITDSMQLTMDEAARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602 Query: 735 PILLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 L+ + I+ + LSK K +A + S +KQM AA L+F EAAR+ Sbjct: 603 VSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662 Query: 787 RDEIKRLK 794 RDE RL+ Sbjct: 663 RDEAARLE 670 >gi|149370618|ref|ZP_01890307.1| excinuclease ABC subunit B [unidentified eubacterium SCB49] gi|149356169|gb|EDM44726.1| excinuclease ABC subunit B [unidentified eubacterium SCB49] Length = 666 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/662 (51%), Positives = 461/662 (69%), Gaps = 16/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQP AI L+ GI S EK Q LLGVTGSGKTFT+A VIE +Q+P +V+A Sbjct: 3 FNLVSEFSPTGDQPEAIKALVTGIESEEKYQTLLGVTGSGKTFTVANVIEKVQKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFKN FP NAVEY+VSYYDYYQPEA++P + TYIEK+ SINE+I+ MR Sbjct: 63 HNKTLAAQLYTEFKNLFPENAVEYYVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEVMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T SLL R D IVV+SVSCIYGIG+ + + ++ L+ G + + +LL LV Y R Sbjct: 123 STTSSLLSGRRDVIVVASVSCIYGIGNPAEFQKSVISLEAGQIISRTKLLHQLVHSLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G FR+ GD++++FPS+ D A+R+ FG++IEEI F P + I + + I Sbjct: 183 TEAEFSHGRFRIKGDTLDVFPSY-ADHAFRIHFFGDEIEEIEAFNPENNEVIEKYDRLTI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT L A+ I+++L ++ ++ G+ LEA+RLE+R T+DLEM+ G C Sbjct: 242 YPANMFVTSPDVLKEAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL R PG P L +Y P D L+ VDESHV+IPQ+ MY GD RK L E Sbjct: 302 SGIENYSRYLDKRLPGTRPFCLLDYFPSDYLMVVDESHVSIPQVGAMYGGDRSRKENLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+ EE+ L+ I VSATP +ELE+ G+ VEQIIRPTGL+DPP+ Sbjct: 362 YGFRLPAAMDNRPLKAEEFESLQNQVIFVSATPADYELEKTGGVFVEQIIRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + Q++D+ +EI + ++ R+L+T LTKRMAE+LT+YL N+R RY+HS+V TL Sbjct: 422 EIRPSLNQIDDLLEEIQIRVEKDERVLVTTLTKRMAEELTKYLMRVNVRTRYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 ERVEIMQDLRRGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N K I+YAD ITKS+QL ID T +REKQ+ +N K+NI P +K+ L Sbjct: 542 RNINGKAIMYADKITKSMQLTIDATNYKREKQIAYNTKNNITPTQIKKSFDNA-----LS 596 Query: 740 DAATTNISID-AQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 ++ +I+ AQ L+ L+K + + +++ RK M AA L+F AA++RD+I Sbjct: 597 NSKKNAYTIETAQSLAAESEENEYLTKPQIEKNIRDTRKAMEKAAKELDFMMAAKLRDKI 656 Query: 791 KR 792 K+ Sbjct: 657 KK 658 >gi|224438015|ref|ZP_03658954.1| excinuclease ABC subunit B [Helicobacter cinaedi CCUG 18818] gi|313144461|ref|ZP_07806654.1| UvrABC system protein B [Helicobacter cinaedi CCUG 18818] gi|313129492|gb|EFR47109.1| UvrABC system protein B [Helicobacter cinaedi CCUG 18818] Length = 658 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/666 (50%), Positives = 447/666 (67%), Gaps = 25/666 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++ Y P+GDQP AI ++ I + K L+GVTGSGKT+TMA +I + P ++M Sbjct: 4 FILESQYAPAGDQPQAITKITDSILNGAKYSTLVGVTGSGKTYTMANIIAKLNLPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R Sbjct: 64 HNKTLAAQLYSEFKGFFPKNKVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IVV+SVS YG+G+ + Y MI +L++G S QK LL LV Y R Sbjct: 124 SATTSLLAYDDVIVVASVSANYGLGNPQEYLTMIEKLEVGQSYTQKALLLKLVNMGYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ ++IFP++ E+ R+ FG++IE I F L Q + +++ +Y Sbjct: 184 DSIFERGNFRVNGEVVDIFPAYNENEFIRIEFFGDEIERIGAFDALERQNLAWLKSFVLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A++ I+ EL+MRL E E E + +E QRL+ R +DLEM+ +G C+ Sbjct: 244 AANQFIVSEKRLQLALQNIESELEMRLQEFELENKQIEYQRLKGRTEFDLEMIRESGICK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P +L +Y + L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGKAPGETPYSLLDYFEQKGKPYLIIVDESHVSLPQFGGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPLRF+E+ P + VSATP ELE Q I EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAKLELELSQSHIAEQIIRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+R + QV D+YDEI L + R+L+T LTK+MAE+L++Y E I+VRYMHS++ Sbjct: 424 LYEVRDSDNQVLDLYDEIKLRVENNERVLITTLTKKMAEELSKYYGELGIKVRYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IR LRLG+F+VL+GINLLREGLD+PE L+AI+DADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNHLIRSLRLGEFNVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN KVILYA IT S+Q A D T RR KQ NK+HNI P+SV+ + Sbjct: 544 AARNVNGKVILYAKKITGSMQRAFDITDYRRAKQEAFNKEHNITPKSVQRGL-------- 595 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFEEAARIRD 788 + + I++ LS +KG +K L +M AA L FEEAARIRD Sbjct: 596 -----ESELKIESSGLSRLYEKGNKKIPKSERDSIIKDLTLKMQQAAKALEFEEAARIRD 650 Query: 789 EIKRLK 794 EI +++ Sbjct: 651 EIAKIR 656 >gi|255321517|ref|ZP_05362675.1| excinuclease ABC, B subunit [Campylobacter showae RM3277] gi|255301373|gb|EET80632.1| excinuclease ABC, B subunit [Campylobacter showae RM3277] Length = 658 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/657 (50%), Positives = 459/657 (69%), Gaps = 7/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ A+A ++ + S K Q LLGVTGSGKTFTMA VI+ + P ++M Sbjct: 4 FEISSKFSPSEDQARAVANIVASVRSGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SS+NE+++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D + V+SVS YG+G+ Y M+ L +G+++ Q+ LL LV YKR Sbjct: 124 SATASLLSFDDVVCVASVSANYGLGNPSEYQGMVAYLGVGENINQRALLQKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++++P++ D A R+ FG++I+ + F L +K+++V +Y Sbjct: 184 DNYFDRGDFRVNGDVVDVYPAYWGDEALRIEFFGDEIDAMYHFDVLENKKLKDVGKFTLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S ++ L A+K I+EEL+ RL E ++G+L+EAQRL+QR+ +DLEM+ +TG C+ Sbjct: 244 ATSQFIVGADRLKIAIKQIEEELEERLKEFNEQGKLVEAQRLKQRVEFDLEMMSSTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P ++F+Y +D L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFELGGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+F+E+ R + VSATP +E+ G + EQI+RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKFDEFINKRAKFLFVSATPNEYEINLSCGHVYEQILRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI+ + QVE ++DE ++ R+L+TVLTK+MAE+L+ Y E I+V+YMHS++ Sbjct: 424 LIEIKDSENQVEILFDEAKKTIERNERVLVTVLTKKMAEELSRYYTELGIKVKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G+FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT+GR Sbjct: 484 AVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN +V+++A ITKS+Q A+D T RR+ Q E+N+ H I P+S I E + Sbjct: 544 AARNVNGRVLMFAKKITKSMQEAMDTTLARRKMQEEYNRAHGITPRSASRNIEESLH--- 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ED T + A + + + +K LRKQM AA+ L FE+AA +RDEI +++ Sbjct: 601 VED-GTEILRKGANLEKMPASERASIIKELRKQMLEAAEQLEFEKAAALRDEIAKIR 656 >gi|154148242|ref|YP_001407219.1| excinuclease ABC subunit B [Campylobacter hominis ATCC BAA-381] gi|189037954|sp|A7I3X8|UVRB_CAMHC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|153804251|gb|ABS51258.1| excinuclease ABC, B subunit [Campylobacter hominis ATCC BAA-381] Length = 657 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/657 (49%), Positives = 454/657 (69%), Gaps = 8/657 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ AI + I + K Q LLGVTGSGKTFTMA +I+ +Q PA++M Sbjct: 4 FEIVSKFSPSKDQQNAIENITASIKNGNKYQTLLGVTGSGKTFTMANIIKNLQMPALIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N +EYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPKNHIEYFISYYDYYQPEAYIPRQDLFIEKDSSINDELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D + ++SVS YG+G+ Y M++ L+I K LL LV Y R Sbjct: 124 SATASLLSFDDVVTIASVSANYGLGNPAEYQGMVLFLEINKKFSLKFLLRKLVDMGYSRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD I+I+P++ D A R+ FG++++++ F + +K +N++ +Y Sbjct: 184 DTYFDRGDFRVNGDIIDIYPAYFNDEAIRLEFFGDELDDMYHFDVIENKKTQNLKKFILY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S ++ L A+K I+ EL RL G+L+EAQRL+QR+ +DLEMLE+TG C+ Sbjct: 244 PTSQFIVGENRLKEAIKGIENELGERLEFFNDNGKLVEAQRLKQRVDFDLEMLESTGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+RYLTG+N GE P +LF+Y D L+ +DESHV++PQ GMY GD RK TL Sbjct: 304 GIENYARYLTGQNAGETPYSLFDYYEIKGMDYLVIIDESHVSLPQFRGMYAGDRSRKETL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL F+E+ R + VSATP +ELE + + QI+RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKRAKFLFVSATPNDYELELSKDHVYYQILRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + ++ + QVE +YD R+L+TVLTK+MAE+L++Y E ++V+YMHS++ Sbjct: 424 EIVLKDSDNQVEILYDMAKEVIADNERVLVTVLTKKMAEELSKYYLELGLKVKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER E+IR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNELIRGLRTGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN KV+++ IT S++ AI+ T +RR+ Q E+NK HNI P+SV + E + Sbjct: 544 AARNVNGKVVMFCKKITNSMKEAIEITQKRRKYQDEYNKTHNITPKSVSRNVEESLK--- 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L+D + ++ A+++ S ++ K +K LRKQM AAD L FE+AA +RDEIK+++ Sbjct: 601 LDDTEAIDRAMKAEKMP-SSERAKI-VKDLRKQMMEAADKLEFEKAAALRDEIKKMR 655 >gi|223557935|gb|ACM90942.1| UvrABC [uncultured bacterium URE12] Length = 697 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/657 (51%), Positives = 452/657 (68%), Gaps = 5/657 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI L GI + + Q+LLGVTGSGKTFTMA VIE +Q+PA+V++ Sbjct: 4 FHLVSPFRPAGDQPRAIDALCAGIEAGKADQVLLGVTGSGKTFTMASVIERLQKPALVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK+LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK++++N+ ID++R Sbjct: 64 PNKVLAAQLYSEFKTFFPENAVEYFVSYYDYYQPEAYIPSTDTYIEKDAAVNDHIDKLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT S+L R D IVV+SVSCIY IGS ++++ M + ++ V +KEL +LVK +Y+R Sbjct: 124 KATTSILTRRDTIVVASVSCIYNIGSPDNFNNMCLHIQKEMPVSRKELTETLVKMRYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI R FRV G +I+IFP+ E +A R+ +F IE I E PLTG + + + I+ Sbjct: 184 DIEFNRKNFRVRGGNIDIFPADSE-LAIRL-IFDETIERICEIDPLTGDVKKEMNDVWIF 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + +A I+ EL+ R+ G+ LEA+R+EQR YDLEM+ TG C+ Sbjct: 242 PATHFITSAEEMESAAVRIEAELEERIKWFRAHGKPLEAERIEQRTRYDLEMIRQTGYCR 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSRYL GR G P +LF Y +D LLF+DESHV +PQI GMY GD RK L + Sbjct: 302 GVENYSRYLAGREAGSMPDSLFGYYRNQDFLLFIDESHVALPQIRGMYEGDRARKQCLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPP 558 +GFRLPS +DNRPL+F+E+ LRP T+ VSATPG EL +C + IVEQIIRPTGL DP Sbjct: 362 FGFRLPSALDNRPLKFDEFESLRPATVYVSATPGPIELSRCPEDSIVEQIIRPTGLTDPE 421 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V+I Q++ + EI A++ R L+ LTK+ AEDL+ YL E+ +R RYMHS++ T Sbjct: 422 VKILPVTGQIQALQKEIAERAEKKERCLVLTLTKKTAEDLSSYLEEKGLRARYMHSDMDT 481 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER++I+ R G+FD LVGINLLREGLDIPE LVAIL+AD EGFLRS+T+LIQ GRA Sbjct: 482 LERLDILAAFRRGEFDALVGINLLREGLDIPEVSLVAILNADNEGFLRSETTLIQIAGRA 541 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV +VIL+AD T SI A+ E RRR Q+E+N+ H I P+S+ + I++ + Sbjct: 542 ARNVGGEVILFADRETGSIGRAVAEMNRRRNIQVEYNRTHGITPKSIVKDIVDYDELHRP 601 Query: 739 EDAATTNI-SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +++AT + + +SK + + M AA+NLNFE AA +RD + LK Sbjct: 602 DNSATATVREVLPDYGKMSKSALSQLADDMERMMREAAENLNFERAAELRDRLAELK 658 >gi|149198552|ref|ZP_01875596.1| excinuclease ABC subunit B [Lentisphaera araneosa HTCC2155] gi|149138267|gb|EDM26676.1| excinuclease ABC subunit B [Lentisphaera araneosa HTCC2155] Length = 672 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/664 (48%), Positives = 464/664 (69%), Gaps = 14/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+++D+ P+GDQP AI +LL G+ S ++ Q LLGVTGSGKTFT+A ++E RP +++A Sbjct: 17 YQLKSDFEPAGDQPEAIKKLLSGLESSQQFQTLLGVTGSGKTFTVANIVEQAGRPVLILA 76 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEFK+FFP N VEYFVSY+DYYQPEAY+P+TDTYI K+SS+N++I++ R Sbjct: 77 QNKTLAAQLFSEFKHFFPKNRVEYFVSYFDYYQPEAYIPQTDTYIAKDSSVNDEIEKFRL 136 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLER D IV++SVSCIYG+G E ++M V+L +GD +++ EL+ L++ +Y+R Sbjct: 137 SATCSLLERRDVIVIASVSCIYGLGDPEMLTRMSVKLAVGDEMDRDELIHLLIESRYERN 196 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG F V GD + IFPS+ +D R+ FG++I+EIS L + + I+ Sbjct: 197 DTAPSRGEFSVSGDVVNIFPSYKDDY-IRIEFFGDEIDEISLRDELNHNVLEGMSHTLIF 255 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T + L + + EEL ++ + E EG+L+EAQR+ QR YD+EM+ G CQ Sbjct: 256 PASHFATSKDRLEKMVPQVLEELDDQVSKFENEGKLVEAQRIYQRTNYDMEMVAELGYCQ 315 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+TGR G P TL ++ P+D L VDESHVTIPQ MY GD RK++L E+ Sbjct: 316 GIENYSRYVTGRPIGSRPFTLIDFFPDDYLTIVDESHVTIPQFRAMYNGDKSRKSSLVEH 375 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ T+ VSATP ++E+++ +VE ++RPTGLVDP VE Sbjct: 376 GFRLPSALDNRPMKFEEFEAKMGQTVFVSATPANYEIDKSSD-VVELVVRPTGLVDPVVE 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QV+D+ EI +++ R+++T LTK+ +EDL++YL + ++ Y+HS + T+E Sbjct: 435 IRPLKGQVDDLLAEIRDRSKKNERVIVTCLTKKTSEDLSDYLQDLGVKCTYIHSGIDTIE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+R+LR G+ DV++GINLLREG+D+PE LVA+LDADKEGFLRS T+L+Q GRAAR Sbjct: 495 RIEILRELRSGEIDVVIGINLLREGMDLPEVSLVAVLDADKEGFLRSTTALLQIAGRAAR 554 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------D 734 N N ILYADT+T S++ +DET +RREKQ+++N++H I PQ++ K E + Sbjct: 555 NANGSCILYADTMTGSMRRFLDETGKRREKQMQYNEEHGITPQTIIRKEQESLFSGGSSV 614 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P ++ + + + + +S + L+ L+ +M AA+ L FE AA +RD+IK LK Sbjct: 615 PGKRKNKKESILELREEDIS------EELLRDLKNEMIKAAEALEFERAAELRDKIKELK 668 Query: 795 SSPY 798 Y Sbjct: 669 EKLY 672 >gi|222824185|ref|YP_002575759.1| excinuclease ABC, subunit B [Campylobacter lari RM2100] gi|222539407|gb|ACM64508.1| excinuclease ABC, subunit B [Campylobacter lari RM2100] Length = 657 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/662 (50%), Positives = 451/662 (68%), Gaps = 14/662 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PS DQ AI ++K I + K Q LLGVTGSGKTFTMA +I+ + P ++M+ Sbjct: 2 FELTSDFKPSPDQKQAIDGIVKSIQAGNKYQTLLGVTGSGKTFTMANIIKNLNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF +N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFANNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA+ SLL +D I ++SVS YG+G+ Y M++ L++ + QKELL LV YKR Sbjct: 122 SASASLLSYDDVICIASVSANYGLGNPSEYVGMVLILELNMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD ++I+P++ ED A R+ FG+++E + + L +K +++ +Y Sbjct: 182 DNFFDRADFRVNGDIVDIYPAYYEDEAIRLEFFGDELEAMYHYNVLENKKGKDLNKFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A++ IK EL RL E E +L+EAQRL+QR+ +DLEML++TG C+ Sbjct: 242 PTSQFSVGETRLKKAIEGIKAELNERLAYFENENKLVEAQRLKQRVEFDLEMLQSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+ +LTG G+ P TLF+Y +D L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYALHLTGLKSGDTPYTLFDYFAIKNQDFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFINKNC---KFLFVSATPAPLELELSKENIFYQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +EI+ + QVE +YDE ++ R+L+TVLTK+MAE+L++Y E ++V+YMHS Sbjct: 419 LDPKIEIKDSENQVEILYDEAKKVIERNERVLITVLTKKMAEELSKYYLELGLKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ +ER EIIR LR G FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS T+LIQT Sbjct: 479 EIDAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSTTALIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+A +TKS+Q AID T RR Q +NKKHNI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFAKKVTKSMQEAIDTTNERRTLQEAYNKKHNITPTSVKRNIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L K +A + K LRKQM AA NL FE+AA +RDEI +L Sbjct: 597 --LKHELEQGEIYRKGKELEKMPAKERAKIVKELRKQMLEAAKNLEFEKAAMLRDEINKL 654 Query: 794 KS 795 ++ Sbjct: 655 RT 656 >gi|298346802|ref|YP_003719489.1| excision endonuclease subunit B [Mobiluncus curtisii ATCC 43063] gi|304389493|ref|ZP_07371456.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656739|ref|ZP_07909626.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236863|gb|ADI67995.1| excision endonuclease subunit B [Mobiluncus curtisii ATCC 43063] gi|304327303|gb|EFL94538.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492694|gb|EFU82298.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 723 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/697 (50%), Positives = 470/697 (67%), Gaps = 45/697 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ ++Y PSGDQP AIA+L + I+S EK +LLG TG+GKT T A +IE +QRP +V+ Sbjct: 18 LEVVSEYTPSGDQPEAIAELAERINSGEKDVVLLGATGTGKTATTAWLIEKLQRPTLVLE 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+S+IN++++R+RH Sbjct: 78 PNKTLAAQLTAEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSAINDEVERLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y + L G +E+++L+ V+ QY R Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLTRGMQIERQDLIKRFVQMQYNRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+I P + E++ RV MFG++I+ ++ +P+TG + V I ++ Sbjct: 198 DVEFTRGNFRVRGDTIDIIPMY-EELGVRVEMFGDEIDALALLHPVTGATLHEVNEIYVF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL+ R +G+LLE QRL R TYDLEML G C Sbjct: 257 PASHYVAGPERMERALAGIESELEERCKWFHDQGKLLEEQRLRMRTTYDLEMLRQIGMCA 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PGEPP TL +Y PED LL +DESHVT+PQI GM+ GD RK TL ++ Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPEDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ T+ +SATPG +EL G +VEQIIRPTGLVDP + Sbjct: 377 GFRLPSAMDNRPLKWEEFQDRIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKIV 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ ++I L + R+L+T LTKRMAEDLT YL +R IRV Y+HS+V TL Sbjct: 436 VKPVEGQIDDLMEQIRLRTEADERVLVTTLTKRMAEDLTTYLAQRGIRVEYLHSDVDTLR 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G+FDVLVGINLLREGLD+PE LV+ILDADK+GFLRS SLIQTIGRAAR Sbjct: 496 RVELLRSLRQGEFDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSTKSLIQTIGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD ++ +++ AIDET RRR KQ+ +N+ H I+PQ +++KI +V D + ED Sbjct: 556 NVHGEVHMYADAVSDAMREAIDETERRRHKQIAYNEAHGIDPQPLRKKISDVTDMLARED 615 Query: 741 AATTNI-------------------------------SIDAQQLSLSK---KKGKAH--- 763 T + I+ +++ ++ + AH Sbjct: 616 IDTAELLGTGYRQPDQKPSAAARSAAQDAAAARAALEVINRARVNATEDQPSQAGAHENT 675 Query: 764 ------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L QMH AA L FE AAR+RDEI LK Sbjct: 676 VDLPSLVAELTDQMHTAASELRFELAARLRDEIADLK 712 >gi|313676676|ref|YP_004054672.1| excinuclease ABC, b subunit [Marivirga tractuosa DSM 4126] gi|312943374|gb|ADR22564.1| excinuclease ABC, B subunit [Marivirga tractuosa DSM 4126] Length = 674 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/667 (49%), Positives = 466/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L KG+ E+ Q+LLGVTGSGKTFT+A ++E +Q+P +V++ Sbjct: 3 FKITSEYQPTGDQPKAIQALQKGVEEGEQDQVLLGVTGSGKTFTIANLVERVQKPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P ++ YIEK+ SINE+I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSNVYIEKDLSINEEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT +LL R D IVV+SVSCIYGIG+ E + + I++L+ GD V + +LL + V Y R Sbjct: 123 SATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNIIRLQQGDKVARNQLLFAFVDILYNR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RGTFRV GD+++IF ++ D A+R+ +G++IE I P TG+KI + I I Sbjct: 183 TTAEFKRGTFRVKGDTVDIFVAY-ADFAYRIMFWGDEIESIQRIDPETGKKISEEKIISI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + +VT + L+ A+K I++++ ++ E++GR LEA+RL++R +D+EM+ G C Sbjct: 242 FPANLFVTGKDVLHQAIKEIQDDMVEQVKFFERDGRFLEAKRLQERTEFDIEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSRY R PG P L +Y P+D L+ +DESHVT+PQ+ MY GD RK L + Sbjct: 302 SGVENYSRYFDRRTPGTRPFCLLDYFPDDFLMVIDESHVTVPQVRAMYGGDRARKINLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YG+RLPS MDNRPL+F+E+ L TI VSATP +EL + +G +VEQ+IRPTGL+DP + Sbjct: 362 YGYRLPSAMDNRPLKFDEFENLIGQTIFVSATPAEYELRKTEGSVVEQVIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI+ + R+L T LTKRMAE+L ++L ++ RY+HSEV TL Sbjct: 422 DVRPSGNQIDDLLEEIDERVKLNERVLCTTLTKRMAEELHKFLGRAGVKSRYIHSEVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI+RDLRLG+FDVLVG+NLLREGLD+PE LVAILDADKEGFLR++ SL+QTIGRAA Sbjct: 482 DRVEILRDLRLGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNQRSLVQTIGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN KVI+YAD IT S+Q A+DET RRR Q +N++H I P++V + ++ + Sbjct: 542 RNEKGKVIMYADKITDSMQQAMDETNRRRAIQKAYNEEHGITPKTVFKSRESILGQTVAV 601 Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D+ T+++ D + K + + +K+M AA L+F EAAR+R Sbjct: 602 DSKKTSQKKYYAGIEETSVAADPVVQYMDKTGLDKMISATKKKMEKAAKELDFIEAARLR 661 Query: 788 DEIKRLK 794 DE + L+ Sbjct: 662 DEWQELQ 668 >gi|292654206|ref|YP_003534103.1| excinuclease ABC subunit B [Haloferax volcanii DS2] gi|291371794|gb|ADE04021.1| excinuclease ABC subunit B [Haloferax volcanii DS2] Length = 698 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/665 (50%), Positives = 449/665 (67%), Gaps = 7/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI L +G VQ LLGVTGSGKT T++ V+E +Q+P +V+A Sbjct: 18 FRVDAPFDPAGDQPEAIEALARGFREGADVQTLLGVTGSGKTNTVSWVVEEIQKPTLVLA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP NAVEYFVSYYDYYQPEAY+ +TDTYI+K+ SINE+IDR+RH Sbjct: 78 HNKTLAAQLYEEFKGLFPDNAVEYFVSYYDYYQPEAYIEQTDTYIDKDMSINEEIDRLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G ++Y+ M ++L++G +++ ELL +LV Y+R Sbjct: 138 SATRSLLTRDDVIVVASVSAIYGLGDPKNYTDMSLRLEVGQGMDRDELLRALVDLNYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++E+FP + A R+ +G++I+ + + PL G+ + + ++ Sbjct: 198 DVDFRQGTFRVRGDTVEVFPMYGR-YAVRIEFWGDEIDRMLKLDPLEGEVKSSEPAVLVH 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P L A+ I+E ++ R+ +++G L+ AQR+E+R T+D+EML TG C Sbjct: 257 PAEHYSIPEEQLEGAISEIEELMEQRVKHFQRQGDLVAAQRIEERTTFDIEMLRETGHCS 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+ R PG+ P TL +Y P+D L +DESHVT+PQI G Y GD RK +L E Sbjct: 317 GIENYSVHLSDREPGDAPYTLLDYFPDDFLTVIDESHVTLPQIKGQYAGDKSRKDSLVEN 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T+ SATPG +E E IVEQI+RPT LVDP VE Sbjct: 377 GFRLPTAYDNRPLTFEEFEETVGQTLFASATPGDYEREHSDQ-IVEQIVRPTHLVDPKVE 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A QV+D+ I+ + R+L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 436 VTEATGQVDDLMARIDERIDRDERVLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IR LRLG DVLVGINLLREGLDIPE LVAILDAD++GFLRS+T+L+QT+GRAAR Sbjct: 496 RHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETTLVQTMGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD +T +++ AI ET RRR Q E N++H P ++++++ E P D Sbjct: 556 NVNGEVVLYADEMTDAMEAAISETQRRRRIQQEFNEEHGYTPTTIEKEVGETNLPGSKTD 615 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 T +S D + + L +M AADNL FE AA IRD I+ L+ Sbjct: 616 --TRGVSGDE---PADADEAVEQIAFLEDRMQEAADNLEFELAADIRDRIQNLRREFDVD 670 Query: 801 GLDDS 805 L+D Sbjct: 671 ALEDG 675 >gi|45358290|ref|NP_987847.1| excinuclease ABC subunit B [Methanococcus maripaludis S2] gi|74579596|sp|Q6LZA2|UVRB_METMP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|44921048|emb|CAF30283.1| excinuclease ABC subunit B [Methanococcus maripaludis S2] Length = 646 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/660 (50%), Positives = 452/660 (68%), Gaps = 29/660 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F+++ ++ P G Q AIA L+K + + + Q LLGVTGSGKTFT+A VIE +Q+P +V Sbjct: 6 FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M Sbjct: 66 IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT ++L R D I+V+SVSCIYG+G+ E + +M +LK+G+ +++ +++ LV QY+ Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ ++ G FRV GD+++I P + +D+ RV MFG++I+ I E P K +++ Sbjct: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y H+V P A+ I +EL L L+ +L++ RL+Q+ YD+EM+E TGS Sbjct: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGS 300 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSR+ R GEP L +Y PED L+ +DESH TIPQI GMY+GD RK +L Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS DNRPL+FEE+ I VSATPG +EL+ + VEQIIRPTGL+DP Sbjct: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VEIR QVED+ E ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++ T Sbjct: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+ SLIQTIGRA Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734 ARN NSKV+LYA +T SI+ A+ ET RRR+ Q EHN+KHNI PQ+ ++EK++++ D Sbjct: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISD 599 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ ++ + + FE+A +IRD I +LK Sbjct: 600 VKHIPVADIPNVIVELEAEMYEAAEALE-----------------FEKAIKIRDTIAKLK 642 >gi|257387213|ref|YP_003176986.1| excinuclease ABC subunit B [Halomicrobium mukohataei DSM 12286] gi|257169520|gb|ACV47279.1| excinuclease ABC, B subunit [Halomicrobium mukohataei DSM 12286] Length = 684 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/667 (50%), Positives = 450/667 (67%), Gaps = 8/667 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F++ + P+GDQP AI QL+ G Q LLGVTGSGKT T++ IE +Q+P +V Sbjct: 16 TAFRVDAPFEPAGDQPDAIEQLVDGYRRGMDKQTLLGVTGSGKTNTVSWAIEELQQPTLV 75 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY EF++ FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SIN++IDR+ Sbjct: 76 IAHNKTLAAQLYEEFRSLFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINDEIDRL 135 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSATRSLL R+D IVV+SVS IYG+G +Y M ++L+ G +E+ ELL LV Y+ Sbjct: 136 RHSATRSLLTRDDVIVVASVSAIYGLGDPRNYVDMSLRLEEGQQIERDELLGQLVDLNYE 195 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ +GTFRV GD++EI+P + A RV M+G++I+ + + PL G+ + + Sbjct: 196 RNDVDFTQGTFRVRGDTVEIYPMYGR-YAVRVDMWGDEIDRLVKMDPLEGEVVSQEPAVL 254 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ HY P L A++ I++ L R+ E++G + AQR+E+R T+DLEM++ TG Sbjct: 255 LHPAEHYSIPEQRLQRAIEEIEDMLADRIRYFERQGDAVAAQRIEERTTFDLEMMKETGY 314 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYS +L+ R GE P TL +Y PED L VDESH TIPQI G + GD RK +L Sbjct: 315 CSGIENYSVHLSDRESGEAPYTLLDYFPEDFLTVVDESHQTIPQIKGQFEGDKSRKESLV 374 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E GFRLP+ DNRPL FEE+ T+ VSATPG +E E+ G +VEQI+RPT LVDP Sbjct: 375 ENGFRLPTAFDNRPLTFEEFEEKTDRTLYVSATPGDYEREES-GQVVEQIVRPTHLVDPA 433 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+ A QV+D+ + I + R+L+T LTKRMAEDLTEYL E + V YMH E T Sbjct: 434 IEVADASGQVQDLLERIESMPDEE-RVLVTTLTKRMAEDLTEYLEESGVDVAYMHDETDT 492 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER E+IR LRLG+ VLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRA Sbjct: 493 LERHELIRSLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRA 552 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN +V+LYAD + +++ AI+ET RRR+ Q +N++H P +++++I E P Sbjct: 553 ARNVNGEVVLYADDTSDAMRSAIEETQRRRQIQQAYNEEHGFEPTTIEKEIGESSLP--- 609 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 A T+ S A + + L +M AADNL FE AA IRD I+ L+ Sbjct: 610 --GAETDTSDVAGDGPADADEAARQIDRLEARMAEAADNLEFELAADIRDRIRELREEFE 667 Query: 799 FQGLDDS 805 G DD Sbjct: 668 LDGGDDG 674 >gi|73670177|ref|YP_306192.1| excinuclease ABC subunit B [Methanosarcina barkeri str. Fusaro] gi|72397339|gb|AAZ71612.1| Excinuclease ABC subunit B [Methanosarcina barkeri str. Fusaro] Length = 670 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/658 (51%), Positives = 457/658 (69%), Gaps = 27/658 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P G QP AI +L++G+ E+ Q LLGVTGSGKT+T+A VI ++RP +V+A Sbjct: 30 FKLVSDFEPKGSQPQAIEKLVEGLEKGEQYQTLLGVTGSGKTYTVANVINQVRRPTLVIA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P + YIEK++ IN +I++MR Sbjct: 90 HNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYLPARNQYIEKDAQINPKIEQMRL 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SL+ R D IVV+SVSCIYG+G+ E++ +M +LK+GD V++KE+L LV+ Q++R Sbjct: 150 AATASLMSRQDVIVVASVSCIYGLGNPENFQKMGFELKVGDKVQRKEILQKLVEIQFERN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++ G FRV GD+I+I P + +++ R+ +FG++++ ISE TGQ+ ++ +Y Sbjct: 210 DLELMPGRFRVKGDTIDIIPGYFDNII-RIELFGDEVDRISEVDKQTGQRTGEMDYFFVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYV P +A++ I EEL+ L EL LE+ RL+QR YD+EM++ TGSC+ Sbjct: 269 PARHYVIPEEEQKSAIQSILEELEEHLPELGL----LESHRLKQRTIYDMEMIQETGSCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R PGE P L +Y PED L+ +DESH TIPQ+ GMY GD RK +L +Y Sbjct: 325 GIENYSRHFDHRQPGEQPFCLLDYFPEDFLMVIDESHQTIPQLHGMYNGDRSRKKSLVDY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F+E+ I VSATP +E E IVEQIIRPTGLVDP VE Sbjct: 385 GFRLPSAYDNRPLKFDEFEKYMRNVIFVSATPSDYEREHS-AHIVEQIIRPTGLVDPEVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR QV DV EI ++G R L+T LTK++AE+LTEYL I+ RY+HS++KT+E Sbjct: 444 IRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEELTEYLARNEIKARYLHSDIKTIE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR SLIQ IGRAAR Sbjct: 504 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPI 736 N +SKV+LYAD +T SI+ A+ ET RRR Q+ +NK+H I P + ++EK++++ D Sbjct: 564 NASSKVVLYADNMTDSIKKAVTETERRRSMQIAYNKEHGIVPTTIRKPIREKVVDITDTK 623 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N+ I+ L +M AAD L+FE A ++R+ IK+L+ Sbjct: 624 HIPKTDIPNMIIE-----------------LETEMREAADRLDFERAIQVREMIKKLE 664 >gi|55981861|ref|YP_145158.1| excinuclease ABC subunit B [Thermus thermophilus HB8] gi|62299025|sp|Q56243|UVRB_THET8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|55773274|dbj|BAD71715.1| excinuclease ABC subunit B (UvrB) [Thermus thermophilus HB8] Length = 665 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/647 (52%), Positives = 449/647 (69%), Gaps = 11/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AIA L++ + E+ LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ Sbjct: 10 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 70 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+G Y + ++ G ++ LL L++ Y+R DI + G Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 189 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ +EIFP++ E RV +FG+++E IS+ +P+TG+++R + ++ +HY++P Sbjct: 190 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSP 248 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 + KE + R+ E+ G +L AQRL++R YDLEML G+C +ENY+RY Sbjct: 249 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS + Sbjct: 308 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 367 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ + VSATPG +EL G +VEQIIRPTGL+DP V ++ Q+ Sbjct: 368 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 426 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 D+ + I A +G R L+TVLT RMAE+LT +L E IR RY+H E+ ER +IRDL Sbjct: 427 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDL 486 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG +D LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAARN +V L Sbjct: 487 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 546 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YAD +++++Q AI+ET RRR Q +N +H I P++V++++ VI P E+A Sbjct: 547 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 601 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LS + + + L M AA+ L+FE AAR+RDEI+ L++ Sbjct: 602 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 645 >gi|222481042|ref|YP_002567279.1| excinuclease ABC, B subunit [Halorubrum lacusprofundi ATCC 49239] gi|222453944|gb|ACM58209.1| excinuclease ABC, B subunit [Halorubrum lacusprofundi ATCC 49239] Length = 684 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/659 (51%), Positives = 452/659 (68%), Gaps = 7/659 (1%) Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206 + P+GDQP AIA+L++G S Q LLGVTGSGKT T++ V E + +P +V+A NK LA Sbjct: 25 FEPAGDQPEAIAELVEGFESGADKQTLLGVTGSGKTNTVSWVAEELNQPTLVLAHNKTLA 84 Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266 AQLY EF+ FP NAVEYFVSYYDYYQPEAYV +TDT+I+KE SINE+IDR+RHSATRSL Sbjct: 85 AQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTFIDKEMSINEEIDRLRHSATRSL 144 Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 L RND IVV+SVS IYG+G ++Y M ++L++G+ V ++ELL+ LV Y+R D+ + Sbjct: 145 LTRNDVIVVASVSAIYGLGDPQNYRDMALRLEVGEEVGREELLARLVDLNYERNDVDFTQ 204 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 GTFRV GD++EI+P + A RV ++G +I+ + + P+ G+ + + ++ HY Sbjct: 205 GTFRVRGDTVEIYPMYGR-YAVRVELWGEEIDRMLKVDPMKGEVVSEEPAVMLHPAEHYS 263 Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446 P L A+ I+ ++ R+ E++G L+ AQR+E+R T+D+EML G C IENYS Sbjct: 264 IPDDKLEQAIAEIQGLMEKRVGYFERQGDLVAAQRIEERTTFDIEMLREAGYCSGIENYS 323 Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506 ++ R G+ P TL +Y P+D L +DESH TIPQI G Y GD RK +L E GFRLP+ Sbjct: 324 VHMDDRESGDAPYTLMDYFPDDFLTVIDESHQTIPQIKGQYEGDKSRKDSLVENGFRLPT 383 Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566 DNRPL FEE+ T+ VSATP +E E I EQI+RPT LVDP VE+ A Sbjct: 384 AYDNRPLTFEEFEEKSDRTLYVSATPSDYERETSDR-IAEQIVRPTHLVDPKVEVTEATG 442 Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 QVED+ + +N ++ R+L+T LTKRMAEDLTEY E I V YMH E TLER EIIR Sbjct: 443 QVEDLLERVNERIERDERVLVTTLTKRMAEDLTEYFEEAGIDVAYMHDETDTLERHEIIR 502 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 DLRLG DVLVGINLLREGLDIPE LVAILDAD+EGFLRS T+L+QT+GRAARNVN +V Sbjct: 503 DLRLGNIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSTTTLVQTMGRAARNVNGEV 562 Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746 +LYAD +T S++ AI+ET RRRE QL+HN++H ++ + + E P D T+N+ Sbjct: 563 VLYADRMTDSMEAAIEETQRRREIQLKHNEEHGYEAATIDKPVSETNLPGSKTD--TSNV 620 Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 S+ + S ++ KA +++L +M AA NL FE AA IRD I +L+ + G DD Sbjct: 621 SVGDVE---SAEEAKAQIEALEDRMDEAASNLEFELAADIRDRIAKLRRAFELDGGDDG 676 >gi|229496125|ref|ZP_04389846.1| excinuclease ABC subunit B [Porphyromonas endodontalis ATCC 35406] gi|229316956|gb|EEN82868.1| excinuclease ABC subunit B [Porphyromonas endodontalis ATCC 35406] Length = 676 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/665 (50%), Positives = 450/665 (67%), Gaps = 10/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI+QL+ G+ Q LLGVTGSGKTFT+A VI RP ++++ Sbjct: 3 FELTSQYKPTGDQPEAISQLVAGLKQNIPAQTLLGVTGSGKTFTIANVIAQANRPTLIVS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAY+ TDTYIEK+ +IN +I++MR Sbjct: 63 HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYLATTDTYIEKDMAINAEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T SLL R D IVVSSVSC+YG+ +S I+ LK G + + L+ L Y Sbjct: 123 RTTASLLSGRRDVIVVSSVSCLYGMADPHVFSDCIITLKRGMTYPRSRLMRDLAASYYIN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + G+FRV GD+I+IFP+ + VA+RV + ++I+ +S +P++G ++ + Sbjct: 183 NKVDFTSGSFRVNGDTIDIFPAIEGYDGVAYRVEYWDDEIDSLSVIHPVSGTIQGELDNL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + A++ IK++L +R+ ELE + EA RL++R+ YD+EM+ G Sbjct: 243 SIYPANLFVTTKEQTKQAIEEIKKDLALRVAELESMEKHYEATRLQERVKYDVEMISEIG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR+ G P L +Y P+D LL VDESHVTIPQ+ MY GD RK +L Sbjct: 303 YCTGIENYSRYFDGRSAGARPFCLLDYFPQDFLLVVDESHVTIPQVRAMYGGDKARKTSL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLP+ +DNRPL F+E+ L P+TI +SATP +ELE+ +G+I+EQIIRPTGL DP Sbjct: 363 VDYGFRLPAALDNRPLTFDEFRELTPSTIYISATPAEYELEESEGVIIEQIIRPTGLPDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+R QV+D+ +EI ++ R+L+T LTKRMAE+L+EYL I Y+HS+V Sbjct: 423 IIEVRPTEHQVDDLMEEIQQRRERHQRVLVTTLTKRMAEELSEYLQRAGIATAYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI I+ +LR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TLERIRILDELRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734 AAR+V KV+ YAD +T+S+Q IDET RRE+QL +NK +NI P+ V + + ++ Sbjct: 543 AARHVEGKVLFYADKVTESMQQTIDETADRRERQLAYNKANNITPRQVVKSGISLVSGGD 602 Query: 735 -PILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 P L A SI D LS + ++ L S RK+M+ AA L+F EAAR+RDE Sbjct: 603 LPSTLPAQAYIESSIPTKDPMVEYLSASQLRSLLDSTRKKMYEAAKALDFSEAARLRDEA 662 Query: 791 KRLKS 795 L++ Sbjct: 663 NDLET 667 >gi|159904552|ref|YP_001548214.1| excinuclease ABC subunit B [Methanococcus maripaludis C6] gi|159886045|gb|ABX00982.1| excinuclease ABC, B subunit [Methanococcus maripaludis C6] Length = 646 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/660 (50%), Positives = 452/660 (68%), Gaps = 29/660 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F+++ D+ P G QP AIA+L+ + + + Q LLGVTGSGKTFT+A VIE +Q+P +V Sbjct: 6 FKLKADFKPKGSQPEAIAELVNDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M Sbjct: 66 IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT ++L R D I+V+SVSCIYG+G+ E + +M +LK+GD +++ +++ LV QY+ Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGDKIKRSDIIEKLVDIQYE 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ ++ G FRV G++++I P + +D+ RV MFG++I+ I E P K +++ Sbjct: 186 RNDMELVPGRFRVKGETLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHELDSFY 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y H+V P A+ I +EL L L+ +L++ RL+Q+ YD+EM+E TGS Sbjct: 245 MYPAKHFVIPEEDKKNAITSILKELDEWLPHLD----MLKSHRLKQKTLYDIEMIEETGS 300 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSR+ R GEP L +Y PED L+ +DESH T+PQI GMY+GD RK +L Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTLPQIRGMYKGDRSRKQSLI 360 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS DNRPLRFEE+ I VSATPG +EL+ + VEQIIRPTGL+DP Sbjct: 361 DYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VEIR QVED+ E ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++ T Sbjct: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+ SLIQTIGRA Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734 ARN NSKV+LYAD +T SI+ A+ ET RRR Q E+N+ HNI P++ ++EK++++ D Sbjct: 540 ARNANSKVVLYADKMTDSIKKAVFETERRRNLQKEYNETHNITPKTIVKPIREKVVDISD 599 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ I+ + + FE+A +IRD I +LK Sbjct: 600 VKHIPVADIPNVIIELEAEMYEAAEALE-----------------FEKAIKIRDTIAKLK 642 >gi|169351518|ref|ZP_02868456.1| hypothetical protein CLOSPI_02298 [Clostridium spiroforme DSM 1552] gi|169291740|gb|EDS73873.1| hypothetical protein CLOSPI_02298 [Clostridium spiroforme DSM 1552] Length = 657 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/656 (52%), Positives = 454/656 (69%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQ AI +L+ G+ + +K Q+LLG TG+GKTFT++ VI A+ +P +V+A Sbjct: 4 FKLVSPFKPMGDQIEAIDKLVAGVKAGKKEQVLLGGTGTGKTFTVSNVIAAVNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P D YI+K + N +I+ +R Sbjct: 64 HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPGRDLYIDKNAKTNYEIEMLRS 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A SL+ER D IVV+SV+ IYG+G+ E Y +MI L++G +++KELL+ LV +QY+R Sbjct: 124 AAMNSLIEREDVIVVASVASIYGLGNPEQYKEMIFALRVGQDIDRKELLTYLVDRQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +GTFRV GD IEI P H E+ R+ +FG+ +E I+E PLTG + T IY Sbjct: 184 DIEQTKGTFRVRGDVIEIVPGHTENWLIRIELFGDTVERITEVDPLTGHVLGAYNTYTIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 YVT + + A I +EL+ RL E E +LLE +RL+QR +D+EML G C Sbjct: 244 PAYGYVTKKEQILKACDTITKELEERLKEFRDETKLLEYERLDQRTRHDVEMLREVGMCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR G+ P TL +Y P+D L+ VDESHV +PQ+ GMY GD RK TL EY Sbjct: 304 GIENYSRHIDGRKEGQRPYTLIDYFPKDFLMIVDESHVMLPQVRGMYNGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + I VSATPG +ELE +VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELEHVNNEVVEQIIRPTGLLDPKIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q++D+ EI + ++ R+L+T LTKRMAEDL+ YL E I+V Y+HS+ KTLE Sbjct: 424 VRPTANQIDDIISEIKMRQEKNERVLITTLTKRMAEDLSAYLKELGIKVAYLHSDTKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLR+GK+DVLVGINLLREGLD+PE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RTEILRDLRIGKYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSNRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739 N N +VI+Y D IT S+ AI+ET RRR+ Q +NK+HNI P ++ ++I + I +++ Sbjct: 544 NSNGEVIMYGDKITDSMAYAIEETNRRRKIQDAYNKEHNIIPTTIHKEIRDAIRGQEVID 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 DAA S+ + SKK +A + L KQM AA L+FE A +RD I L+ Sbjct: 604 DAA----SLVKKGRKASKKDKQAMIHELEKQMKDAAKVLDFERAMELRDIIMELQG 655 >gi|315655348|ref|ZP_07908248.1| excision endonuclease subunit UvrB [Mobiluncus curtisii ATCC 51333] gi|315490288|gb|EFU79913.1| excision endonuclease subunit UvrB [Mobiluncus curtisii ATCC 51333] Length = 723 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/697 (50%), Positives = 464/697 (66%), Gaps = 45/697 (6%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ ++Y PSGDQP AIA+L + I+S EK +LLG TG+GKT T A +IE +QRP +V+ Sbjct: 18 LEVVSEYTPSGDQPEAIAELAERINSGEKDVVLLGATGTGKTATTAWLIEKLQRPTLVLE 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+S+IN++++R+RH Sbjct: 78 PNKTLAAQLTAEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSAINDEVERLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y + L G +E++ L+ V+ QY R Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLTRGMQIERQHLIKRFVQMQYNRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+I P + E++ RV MFG++I+ ++ +P+TG + V I ++ Sbjct: 198 DVEFTRGNFRVRGDTIDIIPMY-EELGVRVEMFGDEIDALALLHPVTGATLHEVNEIYVF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + A+ I+ EL+ R +G+LLE QRL R TYDLEML G C Sbjct: 257 PASHYVAGPERMERALAGIESELEERCKWFHDQGKLLEEQRLRMRTTYDLEMLRQIGMCA 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PGEPP TL +Y PED LL +DESHVT+PQI GM+ GD RK TL ++ Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPEDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS MDNRPL++EE+ T+ +SATPG +EL G +VEQIIRPTGLVDP + Sbjct: 377 GFRLPSAMDNRPLKWEEFQDRIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKIV 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ QV+D+ ++I L + R+L+T LTKRMAEDLT YL +R IRV Y+HS+V TL Sbjct: 436 VKPVEGQVDDLMEQIRLRTEADERVLVTTLTKRMAEDLTTYLAQRGIRVEYLHSDVDTLR 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R LR G+FDVLVGINLLREGLD+PE LV+ILDADK+GFLRS SLIQTIGRAAR Sbjct: 496 RVELLRSLRQGEFDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSTKSLIQTIGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD ++ +++ AI+ET RRR KQ+ +N+ H I+PQ +++KI +V D + ED Sbjct: 556 NVHGEVHMYADAVSDAMRDAIEETERRRHKQIAYNEAHGIDPQPLRKKISDVTDMLARED 615 Query: 741 AATTNI---------------------------------------SIDAQQLSLSKKKGK 761 T + + + Q + Sbjct: 616 IDTAELLGTGYRQPDQKPSAAVRSAAQDTAAARAALEVINRARVNATEDQPSQAGADENT 675 Query: 762 AHLKS----LRKQMHLAADNLNFEEAARIRDEIKRLK 794 L S L QMH AA L FE AAR+RDEI LK Sbjct: 676 VDLPSLVAELTNQMHTAASELRFELAARLRDEIADLK 712 >gi|255961258|ref|YP_003097816.1| DNA excision repair helicase [Onion yellows phytoplasma OY-M] gi|294862472|sp|Q6YQE1|UVRB_ONYPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|162809328|dbj|BAF95573.1| helicase subunit of the DNA excision repair [Onion yellows phytoplasma OY-M] Length = 670 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/663 (49%), Positives = 453/663 (68%), Gaps = 14/663 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++Q+ PSGDQP AI +L+ + Q+LLG TG+GKTFT+A +I+ +Q+ +V+ Sbjct: 6 LFKLQSSLKPSGDQPQAIQKLVNNFKQGLQEQILLGATGTGKTFTIANIIQHLQQKTLVI 65 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LA QLY+E K FP+N VEYF+SYYDYYQPEAYV +DTYIEK+S IN++ID++R Sbjct: 66 AHNKTLAGQLYNELKAMFPNNRVEYFISYYDYYQPEAYVASSDTYIEKDSKINDEIDQLR 125 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSA SLL R+D IVV+SVSCIYG+G ++ Y + + L+IGD E++ L++ L++ +Y+R Sbjct: 126 HSAAGSLLNRDDVIVVASVSCIYGVGDLKDYQKSTLHLQIGDKYERQALINKLIELKYQR 185 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I RGTFRV GD IEI S +++ R+ FGN+IE I F L G+ I N++ I + Sbjct: 186 NEINFQRGTFRVRGDIIEIIASSSKEIGIRIIFFGNEIENIQNFDVLNGKAITNLKLITL 245 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + S Y T L +K I++ELK ++ EK +LL AQ+++ R +DLEMLE G+C Sbjct: 246 FPASLYATNTQKLQEGIKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGNC 305 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSR+L + GE P TL ++ + L +DESHVTIPQI GMY GDF RK L Sbjct: 306 NGVENYSRHLALKEKGEAPSTLIDFFGNEFLTIIDESHVTIPQIKGMYFGDFSRKTNLVN 365 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F E+ I +SATPG++EL + + IVEQIIRPT ++DP + Sbjct: 366 FGFRLPSALDNRPLKFHEFQAKMNKVIYLSATPGNYELTK-KIPIVEQIIRPTFVLDPEI 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR Q++D+Y EI + RIL+T LT M+EDLT YL I+V Y+HSE+K+L Sbjct: 425 EIRPTHNQMDDLYFEIKHQTKNNQRILITTLTINMSEDLTAYLKNLCIKVAYLHSEIKSL 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EI++DLRLGK+D LVG+NLLREGLD+PE LVAILDADK+GFLR++ SLIQTIGRAA Sbjct: 485 QRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRAA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+ K I+YAD I+ ++Q+AI+ET RRR+ Q ++N+ + P ++ + I+E I E Sbjct: 545 RNITGKAIMYADCISPAMQIAIEETYRRRKIQQQYNETMKVTPTALNKTILETISIKQKE 604 Query: 740 DAATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFEEAARIRDEI 790 A N + + +KK + H +K L+K M AA L+FE+AA +RD I Sbjct: 605 SAQNENENGKVK----GQKKLQTHTNITAKNKEIKRLQKMMKEAAKTLDFEKAATLRDLI 660 Query: 791 KRL 793 L Sbjct: 661 LEL 663 >gi|7546428|pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide Excision Repair Enzyme gi|1325924|dbj|BAA08653.1| UvrB [Thermus thermophilus] Length = 665 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/647 (52%), Positives = 449/647 (69%), Gaps = 11/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AIA L++ + E+ LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ Sbjct: 10 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 70 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+G Y + ++ G ++ LL L++ Y+R DI + G Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 189 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ +EIFP++ E RV +FG+++E IS+ +P+TG+++R + ++ +HY++P Sbjct: 190 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSP 248 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 + KE + R+ E+ G +L AQRL++R YDLEML G+C +ENY+RY Sbjct: 249 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS + Sbjct: 308 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 367 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ + VSATPG +EL G +VEQIIRPTGL+DP V ++ Q+ Sbjct: 368 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 426 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 D+ + I A +G R L+TVLT RMAE+LT +L E IR RY+H E+ +R +IRDL Sbjct: 427 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 486 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG +D LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAARN +V L Sbjct: 487 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 546 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YAD +++++Q AI+ET RRR Q +N +H I P++V++++ VI P E+A Sbjct: 547 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 601 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LS + + + L M AA+ L+FE AAR+RDEI+ L++ Sbjct: 602 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 645 >gi|134045892|ref|YP_001097378.1| excinuclease ABC subunit B [Methanococcus maripaludis C5] gi|132663517|gb|ABO35163.1| Excinuclease ABC subunit B [Methanococcus maripaludis C5] Length = 646 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/660 (50%), Positives = 454/660 (68%), Gaps = 29/660 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F+++ D+ P G QP AIA+L+ + + + Q LLGVTGSGKTFT+A VIE +Q+P +V Sbjct: 6 FKLKADFEPKGSQPEAIAELVNELEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M Sbjct: 66 IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDAQINPKIEQM 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT ++L R D I+V+SVSCIYG+G+ E + +M +LK+G+ +++ +++ LV QY+ Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ ++ G FRV GD+++I P + +D+ RV MFG++I+ + E P K +++ Sbjct: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRMYELDPKNMTKKHELDSFY 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y H+V P A+ I +EL L L+ +L++ RL+Q+ YD+EM+E TGS Sbjct: 245 MYPAKHFVIPEEDKKNAITSILKELDEWLPHLD----MLKSHRLKQKTLYDIEMIEETGS 300 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSR+ R GEP L +Y P+D L+ +DESH TIPQI GMY+GD RK +L Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPDDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS DNRPLRFEE+ I VSATPG +EL++ + VEQIIRPTGL+DP Sbjct: 361 DYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGDYELDKSNQV-VEQIIRPTGLLDPE 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VEIR QVED+ E ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++ T Sbjct: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+ SLIQTIGRA Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734 ARN NSKV+LYA+ +T SI+ A+ ET RRR Q E+N+KHNI P++ ++EK++++ D Sbjct: 540 ARNANSKVVLYANKMTDSIKKAVFETERRRNLQKEYNEKHNIAPKTIVKPIREKVVDISD 599 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ I+ + + FE+A +IRD I +LK Sbjct: 600 VKHIPVADIPNVVIELEAEMYEAAEALE-----------------FEKAIKIRDTIAKLK 642 >gi|315638204|ref|ZP_07893386.1| excision endonuclease subunit UvrB [Campylobacter upsaliensis JV21] gi|315481740|gb|EFU72362.1| excision endonuclease subunit UvrB [Campylobacter upsaliensis JV21] Length = 656 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/660 (50%), Positives = 444/660 (67%), Gaps = 13/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+Q+++ PS DQ AI ++K I + K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 FQLQSEFKPSFDQKEAIEGIIKSIKAGHKYQTLLGVTGSGKTFTMANVIKELAMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FFPHN +EYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFPHNHIEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ + + QK LL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPSEYEGMVLIFEENMQISQKALLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD+++I+P++ ED R+ FG+D+E I + L +K ++++ +Y Sbjct: 182 DTFFDRADFRVSGDTVDIYPAYYEDEVVRLEFFGDDLERIYHYNILENKKTKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IKEEL RL E E +L+E QRL+QR+ +DLEML++TG C+ Sbjct: 242 PTSQFSVGEARLKEAIKEIKEELNSRLAYFENENKLVEYQRLKQRVEFDLEMLQSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGQTPYTLFDYYAIKKRPFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP EL+ I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELDLSGKNIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE +YDE + RIL+TVLTK++AE+L+ Y E +RV+YMHS Sbjct: 419 LDPIIELKDSHNQVEILYDEAKKVIARNERILVTVLTKKLAEELSRYYLELGLRVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER E+IR LR G+FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNELIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q AID T+ RR+ Q E+NKKH I P SVK + E + Sbjct: 539 MGRAARNVNGKVLLFCQKITKSMQEAIDTTSERRKLQEEYNKKHKITPTSVKRNLEESLK 598 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L + + S K +K LRK+M AA NL FE+AA +RDEIK+ K Sbjct: 599 NEDLGEIYRKGAKFEKMPASERAK----FVKELRKEMLEAAKNLEFEKAAALRDEIKKFK 654 >gi|21229391|ref|NP_635313.1| excinuclease ABC subunit B [Methanosarcina mazei Go1] gi|23822295|sp|Q8PRZ9|UVRB_METMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|20907982|gb|AAM32985.1| Excinuclease ABC, subunit B [Methanosarcina mazei Go1] Length = 670 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/658 (50%), Positives = 458/658 (69%), Gaps = 27/658 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P G QP AI +L+ G+ E Q LLGVTGSGKT+T+A VI +++P +V+A Sbjct: 30 FKLVSDFEPKGSQPEAIEKLVDGLKKGEPFQTLLGVTGSGKTYTVANVINQIRKPTLVIA 89 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EF+ FFP N VEYFVSYYDYYQPE+Y+P D YIEK++ IN +I++MR Sbjct: 90 HNKTLAAQLYNEFREFFPENRVEYFVSYYDYYQPESYLPAKDQYIEKDAMINPKIEQMRL 149 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SL+ R D IVV+SVSCIYG+G+ E++ +M +LK+GD V +KE+L L+ Q++R Sbjct: 150 AATASLMSRQDVIVVASVSCIYGLGNPENFQKMGFELKVGDKVHRKEILEKLIDIQFERN 209 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++ G FRV GD+I+I P + +D+ R+ +FG++++ ISE TGQ+ +++ +Y Sbjct: 210 DLELMPGRFRVKGDTIDIIPGYFDDII-RIELFGDEVDRISEVDKQTGQRKEDMDYFFVY 268 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYV P +A+++I EEL+ RL EL LE+ RL+QR YD+EM++ TGSC+ Sbjct: 269 PARHYVIPEEEQKSAIQFILEELEERLPELGL----LESHRLKQRTLYDMEMIQETGSCK 324 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R PGE P L +Y P+D LL +DESH TIPQ+ GMY GD RK +L +Y Sbjct: 325 GIENYSRHFDHRQPGEKPFCLLDYFPDDFLLVIDESHQTIPQLHGMYNGDRSRKKSLVDY 384 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATP +E E +VEQIIRPTGLVDP VE Sbjct: 385 GFRLPSAFDNRPLKFEEFEKYMKNVIFVSATPADYEREHSSR-VVEQIIRPTGLVDPEVE 443 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV DV EI ++G R L+T LTK++AE+LTE+L + I+ RY+HS++KT+E Sbjct: 444 VRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEELTEFLAKNEIKARYLHSDIKTIE 503 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR+ SLIQ IGRAAR Sbjct: 504 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRNSKSLIQIIGRAAR 563 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPI 736 N +S+V+LYAD +T SI+ A+ ET RRR Q+ +N++H I P + ++EK++++ D Sbjct: 564 NSSSRVVLYADNMTDSIKSAVQETERRRSMQIAYNEEHGIVPTTIRKPIREKVVDITDTK 623 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + N+ I+ L +M AAD L+FE A ++R+ IK+L+ Sbjct: 624 HIPKTDIPNVIIE-----------------LDAEMREAADRLDFERAIQVRELIKKLE 664 >gi|197294511|ref|YP_001799052.1| excinuclease ABC subunit B [Candidatus Phytoplasma australiense] gi|171853838|emb|CAM11787.1| Helicase subunit of the DNA excision repair complex [Candidatus Phytoplasma australiense] Length = 663 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/656 (49%), Positives = 454/656 (69%), Gaps = 7/656 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F+++TD P+GDQP AI +L++G K Q+LLG TG+GKTFT+A +I+ +Q+ + Sbjct: 1 MNMFKLKTDLKPNGDQPQAIKKLVQGFEKGFKEQILLGATGTGKTFTIANIIQHLQQQTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LA QLY+E K FP N VEYF+SYYDYYQPEAYV +DTYIEK+S IN++ID+ Sbjct: 61 VIAHNKTLAGQLYNELKMMFPENKVEYFISYYDYYQPEAYVTSSDTYIEKDSKINDEIDQ 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +RH+A SLL R D IVV+SVSCIYG+G +E Y + L+IGD E+ L LV+ ++ Sbjct: 121 LRHNAIVSLLNRKDVIVVASVSCIYGVGDLEDYQSSTLFLQIGDRFERNLFLKKLVELKF 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R ++ RGTFRV GD +EI PS +++ R+ FG++IE I F L + I N++ Sbjct: 181 QRNEVNFGRGTFRVRGDIVEIIPSSHKEIGIRIIFFGDEIERIQLFELLNAKVIENLKVT 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 KI+ S Y + ++K I++ELK ++ EKE L+ AQ+++ R ++DLEML G Sbjct: 241 KIFPASLYAVNAEKIKESIKRIRQELKEQIKHFEKEKNLVAAQKIKMRTSHDLEMLAEMG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+L+ + G+PP TL ++ ++ L +DESHVT+PQI GMY GDF RK+ L Sbjct: 301 HCSGIENYSRHLSLKEQGQPPSTLIDFFDKEFLTIIDESHVTVPQIKGMYFGDFSRKSNL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 YGFRLPS +DNRPL+F E+ I +SATPG E+E+ II EQIIRPT ++DP Sbjct: 361 VNYGFRLPSALDNRPLKFHEFEEKIDKIIYLSATPGDHEIERKLPII-EQIIRPTFVLDP 419 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E++ + Q++D+Y EI Q+ R+L+T LT M+EDLT YL I+V Y+HSE+K Sbjct: 420 EIEVKRTQNQMDDLYFEIKKRIQKNQRVLITTLTINMSEDLTAYLKNLGIKVTYLHSEIK 479 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +L+R+EI+RDLRLGK+D LVG+NLLREGLD+PE LVAILDADK+GFLR++ SLIQTIGR Sbjct: 480 SLQRLEILRDLRLGKYDCLVGVNLLREGLDLPEVSLVAILDADKQGFLRNQRSLIQTIGR 539 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ KVI+YAD + +++LAI ET RRR+ Q ++N+K+ + P S+K+ I E + I Sbjct: 540 AARNVDGKVIMYADNTSDAMKLAITETNRRRQIQKDYNQKNQLTPLSLKKNISESV-SIQ 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 +D AT+ ++ K +K L M AA+ L+FE+AA +RD I L Sbjct: 599 TKDKATS-----KKEPMFDLKNINQQIKKLTNDMKKAAEKLDFEKAASLRDLILEL 649 >gi|218295874|ref|ZP_03496654.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23] gi|218243612|gb|EED10140.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23] Length = 665 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/647 (51%), Positives = 446/647 (68%), Gaps = 11/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AI +LL+ + E+ LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ Sbjct: 10 PKGDQPKAIGELLEALRDGERYVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 70 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+G Y + ++ G ++ LL L+ Y+R +I + G Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGMRYPREALLEKLLDLGYERNEIDLSPGR 189 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FRV G+ +E+FP++ E RV +FG+++E I + +P+TG+++R + ++ +HY++P Sbjct: 190 FRVRGEVLEVFPAY-ETEPIRVELFGDEVERILQVHPITGERLRELPGFVLFPATHYLSP 248 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 + KE + R+ E+ G +L AQRL++R YDLEML G+C +ENY+RY Sbjct: 249 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS + Sbjct: 308 FTGKAPGEPPFTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 367 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ + VSATPG +EL G +VEQIIRPTGL+DP V ++ QV Sbjct: 368 DNRPLRFEEFLEKVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQV 426 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 D+ + I AQ+G R L+TVLT RMAE+LT++L E IR RY+H E+ ER +IRDL Sbjct: 427 LDLMEGIRERAQRGERTLVTVLTVRMAEELTDFLVEHGIRARYLHHELDAFERQALIRDL 486 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG FD LVGINLLREGLD+PE LVAILDADK GFLRS+ SLIQTIGRAARN +V L Sbjct: 487 RLGHFDALVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNARGEVWL 546 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YAD ++++++ AI ET RRR Q +N +H I P++V++ + VI P E + Sbjct: 547 YADQVSEAMEKAIRETNRRRAIQEAYNLEHGIVPKTVEKGVRAVIRP---EGYGEAPFEL 603 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +++ L KA L L M AA+ L+FE AA +RDEI+ L++ Sbjct: 604 PSEEEDL-----KARLAELELLMWQAAEALDFERAAALRDEIRALEA 645 >gi|119357816|ref|YP_912460.1| excinuclease ABC subunit B [Chlorobium phaeobacteroides DSM 266] gi|189037955|sp|A1BI09|UVRB_CHLPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|119355165|gb|ABL66036.1| Excinuclease ABC subunit B [Chlorobium phaeobacteroides DSM 266] Length = 685 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/666 (50%), Positives = 449/666 (67%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ ++Y P GDQP AI L G+ ++ Q LLGVTGSGKTFT++ VI + +P +VM+ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP NAVEYFVSYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T SLL R D IVVSSVSCIYG+GS + + IV+L+ G ++ L LV Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ G FRV GD I++ P+H E++A RV FG++IE + F +G+ + I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y ++ TL AM I+ EL RL EL ++ RL+EA+RLE+R YDLEM++ G C Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR+ GE P L +Y PED L+ VDESHVT+PQI GMY GD RKA L E Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ + P I VSATPG ELE+C G++VEQ++RPTGL+DPPV Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ EI +G + L+ LTKRM+EDL +Y + IR RY+HSE+K+L Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I+R+LR G +VLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ V+ YAD +T+SI +DET RRR Q +N+ H I P+S+++ + +V++ + Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607 Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA A + + A S + ++ A + LR +M+ AA + +E+AA +R Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667 Query: 788 DEIKRL 793 DEI RL Sbjct: 668 DEIARL 673 >gi|9955068|pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair Enzyme Uvrb From Thermus Thermophilus Length = 664 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/647 (52%), Positives = 449/647 (69%), Gaps = 11/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AIA L++ + E+ LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ Sbjct: 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 68 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 69 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 128 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+G Y + ++ G ++ LL L++ Y+R DI + G Sbjct: 129 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 188 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ +EIFP++ E RV +FG+++E IS+ +P+TG+++R + ++ +HY++P Sbjct: 189 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSP 247 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 + KE + R+ E+ G +L AQRL++R YDLEML G+C +ENY+RY Sbjct: 248 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 306 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS + Sbjct: 307 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 366 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ + VSATPG +EL G +VEQIIRPTGL+DP V ++ Q+ Sbjct: 367 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 425 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 D+ + I A +G R L+TVLT RMAE+LT +L E IR RY+H E+ +R +IRDL Sbjct: 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 485 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG +D LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAARN +V L Sbjct: 486 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 545 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YAD +++++Q AI+ET RRR Q +N +H I P++V++++ VI P E+A Sbjct: 546 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 600 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LS + + + L M AA+ L+FE AAR+RDEI+ L++ Sbjct: 601 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 644 >gi|150403661|ref|YP_001330955.1| excinuclease ABC subunit B [Methanococcus maripaludis C7] gi|150034691|gb|ABR66804.1| excinuclease ABC, B subunit [Methanococcus maripaludis C7] Length = 646 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/660 (50%), Positives = 452/660 (68%), Gaps = 29/660 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F+++ D+ P G QP AIA+L+ + +S + Q LLGVTGSGKTFT+A VIE +Q+P +V Sbjct: 6 FKLKADFKPKGSQPDAIAELVNDLEKNSEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLY+EFK+FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M Sbjct: 66 IAHNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT ++L R D I+V+SVSCIYG+G+ + + +M +LK G+ +++ ++ LV QY+ Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPKLFKEMGFELKTGEKIKRSGIIEKLVDIQYE 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ ++ G FRV GD+++I P + +D+ RV MFG++I+ I E P K +++ Sbjct: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDIV-RVEMFGDEIDRIYELDPKNMTKKHELDSFY 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y H+V P A+K I +EL L L+ +L++ RL+Q+ YD+EM+E TGS Sbjct: 245 MYPAKHFVIPEEDKKNAIKSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGS 300 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSR+ R GEP L +Y PED L+ +DESH TIPQI GMY+GD RK +L Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS DNRPLRFEE+ I VSATPG +EL+ + VEQIIRPTGL+DP Sbjct: 361 DYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VEI+ QVED+ E ++G R+L+T LTKR+AE+LTEYL +R ++ RY+HS++ T Sbjct: 420 VEIKPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRQVKARYLHSDIDT 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+ SLIQTIGRA Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734 ARN NSKV+LYAD +T SI+ A+ ET RRR Q ++N+ HNI P++ ++EK++++ D Sbjct: 540 ARNANSKVVLYADKMTDSIKKAVSETERRRNLQKDYNEMHNITPKTIVKPIREKVVDISD 599 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + A N+ I+ + + FE+A +IRD I +LK Sbjct: 600 IKHIPVADIPNVIIELEAEMYEAAEALE-----------------FEKAIKIRDNIAKLK 642 >gi|78186279|ref|YP_374322.1| excinuclease ABC subunit B [Chlorobium luteolum DSM 273] gi|78166181|gb|ABB23279.1| Excinuclease ABC subunit B [Chlorobium luteolum DSM 273] Length = 695 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/667 (49%), Positives = 452/667 (67%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AI +L +G+ + Q LLGVTGSGKTFT++ VI RP +VM+ Sbjct: 15 YRLVSPYEPAGDQPKAIKELTEGLKAGSPFQTLLGVTGSGKTFTISNVIAQAGRPVLVMS 74 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 75 HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPSIDKYIAKDLRINDEIERLRL 134 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL R D IVVSSVSCIYG+GS E + I++L+ G E+ L L+ Y R Sbjct: 135 KATSALLSGRRDVIVVSSVSCIYGLGSPEEWKSQIIELRTGMLKERNSFLQELIALHYVR 194 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ G FRV GD I++ P++ + +A RV FG++IE + F +G+ + + I Sbjct: 195 DDVDPGSGKFRVRGDIIDLIPAY-DQLALRVEFFGDEIESLQTFDMSSGEVLGSDPYAFI 253 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V L AM I+ EL RL EL R +EA RLE+R YDLEM++ G C Sbjct: 254 YPARQFVAGEEQLRQAMLRIENELAGRLNELRSAERFVEAGRLEERTRYDLEMMKELGYC 313 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+++GRNPGE P L +Y PED L+ VDESHVT+PQI GMY GD RK+ L E Sbjct: 314 SGIENYSRHISGRNPGERPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKSILVE 373 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRF+E+ + P I +SATPG ELE+ G++VEQ++RPTGL+DPPV Sbjct: 374 HGFRLPSALDNRPLRFDEFMDMVPEVICISATPGDLELERSGGVVVEQVVRPTGLLDPPV 433 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++++ EI G ++L+ LTKRM+EDL ++L + +R RY+HSE+K+L Sbjct: 434 EVRPVKGQIDNLLMEIRRHTAGGHKVLVMTLTKRMSEDLHDFLRKAGVRSRYLHSEIKSL 493 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G+ DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 494 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 553 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV V+LYADTIT+SI+ +DET RRRE Q +N++H I P+S+ + + E++D + Sbjct: 554 RNVEGFVVLYADTITRSIREVLDETARRREIQHRYNEEHGITPRSITKSVEEILDTTSVA 613 Query: 740 DAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + ++L S++ ++G A LR +M AA + +E+AA +R Sbjct: 614 DAEERYRRRRFGLEPRPERLLSGVLESMTPEEGFAMAAELRAEMQQAALAMEYEKAAYLR 673 Query: 788 DEIKRLK 794 DEI RL+ Sbjct: 674 DEIARLE 680 >gi|237750187|ref|ZP_04580667.1| excinuclease ABC subunit B [Helicobacter bilis ATCC 43879] gi|229374081|gb|EEO24472.1| excinuclease ABC subunit B [Helicobacter bilis ATCC 43879] Length = 660 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/660 (49%), Positives = 459/660 (69%), Gaps = 7/660 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 F + ++Y P+GDQP AI L K I++ EK L+GVTGSGKTF+MA +I+ + P ++ Sbjct: 4 NLFNLTSNYKPAGDQPQAINFLCKQINNNEKYNTLIGVTGSGKTFSMANIIQNLNMPTLI 63 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 M+ NK L AQLYSEFK+FFPHN VEYF+S++DYYQPEAY+PR D +IEK+SSIN++++R+ Sbjct: 64 MSHNKTLCAQLYSEFKSFFPHNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINDELERL 123 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R SAT SLL +D IV++SVS YG+G+ Y MI +L++ + +QK LL+ LV+ Y Sbjct: 124 RLSATTSLLAYDDVIVIASVSANYGLGNPSEYLTMIEKLEVSKTYQQKRLLTKLVEMGYT 183 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R + RG+FRV G+ ++IFP++ E R+ FG++IE I+ L ++ +++ Sbjct: 184 RNETSFERGSFRVKGEVVDIFPAYNEVEFIRIEFFGDEIERIAVLESLDNTLVKELDSYV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +YA + ++ L A+ I++EL+ RL E E R+LE +RL+ R +DLEM++ G Sbjct: 244 LYAANQFIVGENRLKNAIVEIEQELQERLKFYESENRMLEYERLKSRTEFDLEMIKENGI 303 Query: 439 CQSIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 C+ IENY+R+LTG+ PGE P +L FEY + LL VDESHV++PQ GMY GD RK Sbjct: 304 CKGIENYARHLTGKKPGETPFSLLDYFEYKKKPYLLIVDESHVSLPQFGGMYAGDRSRKE 363 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L EYGFRLPS +DNRPL+F+E+ + + VSATP EL + + EQ+IRPTGL+ Sbjct: 364 VLVEYGFRLPSALDNRPLQFDEFINKKANFLFVSATPAELELSLSKDNVCEQLIRPTGLL 423 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP E+R +R QV+D+ +EI + ++ R+L+T LTK+M+E+L +Y + I++ Y+HSE Sbjct: 424 DPEFEVRDSRIQVKDLLEEIKVCVERKERVLITTLTKKMSEELAKYYAKEGIKIEYLHSE 483 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + +ER +IR+LRLG FDVLVGINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQT+ Sbjct: 484 IDAIERNHLIRNLRLGVFDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTM 543 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNVN KVILYA+ ITKS++ A+D TT RR+KQ E NKKH I P SV + E Sbjct: 544 GRAARNVNGKVILYAEKITKSMRKAMDTTTYRRKKQEEFNKKHGIIPTSVSRNVEE---E 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LED+ + + + K+ + +K L+ +M A+ L+FE A ++RDEI RL+S Sbjct: 601 LRLEDSTKVYDKMSKKN-KIPAKEKENLIKDLKIKMLEASKRLDFEAAIQLRDEIARLRS 659 >gi|309803824|ref|ZP_07697909.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 11V1-d] gi|308164058|gb|EFO66320.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 11V1-d] Length = 624 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/623 (51%), Positives = 442/623 (70%), Gaps = 5/623 (0%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G TG+GKTFTMA +I + +P +V++ NK L QLY EFK FFP+NAVEYFVSYYDYYQP Sbjct: 3 GATGTGKTFTMANLIAKLNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQP 62 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294 EAYVP +DTYIEK+S+IN++ID++RH+ T +L++R D IVV+SVSCI+G+G Y++ + Sbjct: 63 EAYVPSSDTYIEKDSAINDEIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSV 122 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L +G+ E+ LL LV QY R D+ + RG FRV GD +EIFP+ + +RV FG Sbjct: 123 ISLSVGEEYERDLLLRDLVNIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFG 182 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 ++I++I E LTG+ + E I ++ +H++T + A+ IK+EL +++ + +G Sbjct: 183 DEIDQIVEANSLTGEILGKCEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKG 242 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 +LLEAQR++QR YD+EM++ G IENYSR++ R GEPP TL ++ P+D L+ +D Sbjct: 243 KLLEAQRIKQRTNYDIEMMQEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILID 302 Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 ESH T+P++ MY GD RK TL +YGFRLPS +DNRPL+ E+ + VSATPG Sbjct: 303 ESHATMPELQAMYNGDRRRKQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGD 362 Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594 +EL + +VEQIIRPTGL+DP VE+R Q++D+ EIN+ ++ R+ +T LTK+M Sbjct: 363 YELSRTDK-VVEQIIRPTGLLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKM 421 Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 +EDLT+YL E I+V+Y+HSE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE LV Sbjct: 422 SEDLTDYLKELGIKVQYLHSEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLV 481 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 AILDADKEGFLRS LIQ +GRAARN N KVI+YAD IT S+Q AID T RRR Q+ Sbjct: 482 AILDADKEGFLRSTRPLIQMMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLF 541 Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQM 771 N+KH+I P+++ + I ++I D +I+ D L+ LS K+ + + +L +QM Sbjct: 542 NQKHHIIPKTIVKPIRDIISHTKDVDQKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQM 600 Query: 772 HLAADNLNFEEAARIRDEIKRLK 794 +AA L+FE AA +RD I LK Sbjct: 601 KIAAQKLDFETAATLRDAIIDLK 623 >gi|207092372|ref|ZP_03240159.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_AG0C1] Length = 658 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/664 (48%), Positives = 459/664 (69%), Gaps = 13/664 (1%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA+ Sbjct: 1 MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R Sbjct: 61 IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +IR ++++ Sbjct: 181 SRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIRRLDSV 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494 C+ IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 + L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRP Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRP 417 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP E+R + QV+D++DEI L +G R+L+T LTK+MAE+L +Y E ++ RY Sbjct: 418 TGLLDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARY 477 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MHSE+ +ER +IR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSL Sbjct: 478 MHSEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSL 537 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQT+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E Sbjct: 538 IQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEE 597 Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 + L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI Sbjct: 598 ELK--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIA 653 Query: 792 RLKS 795 +L++ Sbjct: 654 QLRT 657 >gi|325297929|ref|YP_004257846.1| UvrABC system protein B [Bacteroides salanitronis DSM 18170] gi|324317482|gb|ADY35373.1| UvrABC system protein B [Bacteroides salanitronis DSM 18170] Length = 674 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/667 (50%), Positives = 463/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIAQL +G+ + Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELVSDYQPTGDQPEAIAQLTEGVKNGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN +ID++R Sbjct: 63 HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINGEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL RND +V+SS+SCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRNDVVVISSISCIYGMGNPADFYNNVIEIKKGKKLDRNVFLRKLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD+++IF ++ D A RV + ++I+ I E P++G +I + KI Sbjct: 183 NDLELNRGNFRVKGDTVDIFLAYT-DSALRVMFWDDEIDAIEEIDPISGHRINEYDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + ++ A+ I+++L ++ E++G+ EA+RL +R+TYD+EML G C Sbjct: 242 YPANLFMTTKESVLRAIHQIEDDLTKQVAWFEEQGKNYEAKRLYERVTYDMEMLRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG P L ++ P+D L+ +DESH ++PQI MY GD RK L + Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPKDFLMVIDESHASVPQIRAMYGGDRARKENLIK 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L I VSATP +ELEQ +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQELAKQIIYVSATPDDYELEQSEGIVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EIR + QV+D+ +EI ++ RIL+T LTKRMAE+LTEYL + IR Y+HS+V+TL Sbjct: 422 EIRPSMNQVDDLMEEIQQRIERQERILVTTLTKRMAEELTEYLLQHGIRCTYIHSDVETL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMEDLRQGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN KVI+YAD IT S+Q IDET RRR KQL +N+ H I P+ +K ++ Sbjct: 542 RNVNGKVIMYADRITDSMQQTIDETNRRRAKQLAYNEAHGITPKQIKRAYNNILLEQTES 601 Query: 734 -----DPILLEDA-ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 P DA A + D +SK++ + + RK M AA L+F EAA+ R Sbjct: 602 ESSTSKPKAYTDAPAQMYAAADPIVQYMSKEQLQKSINRTRKLMQEAAKKLDFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ RL+ Sbjct: 662 DELLRLE 668 >gi|317011311|gb|ADU85058.1| excinuclease ABC subunit B [Helicobacter pylori SouthAfrica7] Length = 658 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/662 (49%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIDALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKAGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + TT RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFETTTYRRAKQEEFNKLHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D A ++ ++ S++ +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDDEAKIAKALKKDKIPKSER--DKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|313124979|ref|YP_004035243.1| excinuclease ABC subunit b [Halogeometricum borinquense DSM 11551] gi|312291344|gb|ADQ65804.1| Excinuclease ABC subunit B [Halogeometricum borinquense DSM 11551] Length = 704 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/644 (51%), Positives = 439/644 (68%), Gaps = 7/644 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI QL +G + + Q LLGVTGSGKT T+A +E +Q+P +V+A Sbjct: 22 FRVDAPFDPAGDQPEAIEQLARGFEAGMEKQTLLGVTGSGKTNTVAWTVEEIQKPTLVIA 81 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFKN FP NAVEYFVSYYDYYQPEAY+ +TDTYI+K+ SINE+IDR+RH Sbjct: 82 HNKTLAAQLYEEFKNLFPDNAVEYFVSYYDYYQPEAYIEQTDTYIDKDMSINEEIDRLRH 141 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G +Y+ M ++L++GD +++ +LL LV Y+R Sbjct: 142 SATRSLLTRDDVIVVASVSAIYGLGDPANYTDMSLRLEVGDRMDRDDLLRRLVDLNYERN 201 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++E+FP + A R+ +G++I+ + + PL G + I+ Sbjct: 202 DVDFQQGTFRVRGDTVEVFPMYGR-YAVRIEFWGDEIDRMQKLDPLQGAVKSTEPAVLIH 260 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P L A+ I+E ++ R+ E++G L+ AQR+E+R T+D+EML+ TG C Sbjct: 261 PAEHYSIPEDQLEQAISEIEELMEERVRYFERQGDLVAAQRIEERTTFDIEMLQETGYCS 320 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +++ R G+ P TL +Y P+D L +DESH T+PQI G + GD RK +L E Sbjct: 321 GIENYSVHMSNRESGDAPYTLLDYFPDDFLTVIDESHQTLPQIRGQFAGDKARKDSLVEN 380 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T+ VSATPG +E E + I EQI+RPT LVDP VE Sbjct: 381 GFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPGDYEREHSEQ-IAEQIVRPTHLVDPKVE 439 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A QV+D+ D I+ ++ R L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 440 LADATGQVDDLLDRIDTRIERDERTLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 499 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IRDLRLG DVLVGINLLREGLDIPE LVAILDAD+EGFLRS T+LIQT+GRAAR Sbjct: 500 RHELIRDLRLGHIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSTTTLIQTMGRAAR 559 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VILYAD T S++ AI+ET RRR Q N++H P ++ + + E P Sbjct: 560 NVNGEVILYADETTDSMEAAIEETQRRRAIQQAFNEEHGYEPTTIDKAVGETNLP----- 614 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + T+ + A + + + ++ L +M AADNL FE AA Sbjct: 615 GSETSATRSASEQPTDEDDAREQIEYLEDRMQEAADNLEFELAA 658 >gi|332295640|ref|YP_004437563.1| UvrABC system protein B [Thermodesulfobium narugense DSM 14796] gi|332178743|gb|AEE14432.1| UvrABC system protein B [Thermodesulfobium narugense DSM 14796] Length = 684 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/656 (50%), Positives = 451/656 (68%), Gaps = 7/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQ AI QL++G+ K Q LLG TG+GKTFT+A VI +++P ++MA Sbjct: 4 FKLFEPFKPAGDQERAIDQLVEGVEKGYKYQTLLGATGTGKTFTIANVINRVKKPTLIMA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL SE + FFP NAVEYF+SYYDYYQPEAY+P+ D YIEK++SIN++IDR RH Sbjct: 64 PNKTLAAQLCSELRTFFPENAVEYFISYYDYYQPEAYIPQRDLYIEKDASINDEIDRYRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLLER D IVV+SVSCIY +G E Y ++ GD + + + + L+ Y+R Sbjct: 124 SATRSLLEREDVIVVASVSCIYSLGQPEEYKTNSFVIREGDKLSRDDFIDQLIYMLYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV + ++ PS ++ A+RV + I I++ +P++ + + +E++ I+ Sbjct: 184 DYEFKRNNFRVNINVVDFIPS-FDEYAYRVRFDEDSIRSITKLHPVSLEPVEKIESLWIF 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH++ L A+ I+ EL+ R+ E G+++EA+R+EQR YD+EML+T G C+ Sbjct: 243 PASHFILRDEKLKRAIDSIRVELEERIKYFESLGKVVEAKRIEQRTLYDIEMLQTIGYCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYSR+ T R PGEPP TL +Y P+D L+ +DESH+++PQI GMYRGD RK L ++ Sbjct: 303 GVENYSRHFTFRKPGEPPITLLDYFPKDFLVILDESHLSVPQIRGMYRGDEARKKNLIDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPLRFEE+ I +SATP S+E E I VEQIIRPTG++DP VE Sbjct: 363 GFRLPSAYDNRPLRFEEFIEKANQIIFMSATPASFEKENSSQI-VEQIIRPTGILDPIVE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +QV D +E A++G R L+T LTKR+AEDL YL + I+ Y+HSE +E Sbjct: 422 VRDFESQVNDSINETRENAKRGFRTLITTLTKRLAEDLANYLIQEGIKAYYLHSEQDAIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++++ +LRLGK+DV+VGINLLREGLD+PE V ILDADKEGFLRS TSLIQTIGRAAR Sbjct: 482 RLDVLHNLRLGKYDVVVGINLLREGLDLPEVTRVLILDADKEGFLRSSTSLIQTIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV SKVILYA IT+S++ AIDET RRR+ Q+E+N KHNI P S+ + I +++D D Sbjct: 542 NVESKVILYASKITESMREAIDETNRRRKIQMEYNLKHNITPTSISKPISDIVD----RD 597 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + +I + + + S K + K +R +M A FEEAA+ RD +K LK+ Sbjct: 598 SEGNSIEEELRSIIKSNKNDLELTEKEIRTKMIEYAKEWKFEEAAKYRDLLKLLKN 653 >gi|288574819|ref|ZP_06393176.1| excinuclease ABC, B subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570560|gb|EFC92117.1| excinuclease ABC, B subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 669 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/650 (49%), Positives = 450/650 (69%), Gaps = 8/650 (1%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 + F++++ + PSGDQ AI +L +G K Q L+GVTGSGKTFT+A VI+ +QRP ++ Sbjct: 3 SLFKLKSPWAPSGDQGQAIDKLSEGFEKGLKYQTLMGVTGSGKTFTVANVIQKVQRPTLI 62 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 +A NK LAAQLYSEF++FFP NAV YFVSYYDYYQPEAYVP +DTYIEK++S+N++I+++ Sbjct: 63 LAHNKTLAAQLYSEFRDFFPDNAVHYFVSYYDYYQPEAYVPSSDTYIEKDASVNDRIEKL 122 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R +AT++L+ER D IVV+SVSCIYG+G ++Y + ++ +G+ +++ L SL+ Y Sbjct: 123 RLAATKALIEREDVIVVASVSCIYGLGKKKTYEEAVIPFSVGEIWDRRTFLESLMAGYYS 182 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ + G FRV GD +EIFP++ D RV F ++IE I E P++G+ + E Sbjct: 183 RNDVALSPGNFRVRGDVVEIFPAY-SDTCLRVVFFDDEIESIEETDPVSGKTVLRKERAA 241 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY HYVT + AMK I EE++ ++ +G+ +EAQR+E R YD+EML TG Sbjct: 242 IYPAQHYVTTDEAVAGAMKAISEEMRQQVDLFTSQGKFIEAQRIESRTRYDMEMLVETGY 301 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSRY+ GR+ GEPP TL ++ P+D LL VDESH+T+PQ+ GM+ GD RK TL Sbjct: 302 CSGIENYSRYMDGRSEGEPPGTLIDFFPDDFLLVVDESHITLPQVRGMFNGDRARKETLV 361 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +GFRLPSC+DNRPLR+EE++ T+ +SATPG WE + IVEQ+IRPTG+ DP Sbjct: 362 NHGFRLPSCLDNRPLRWEEFSRYMNRTLFLSATPGDWESSMSER-IVEQVIRPTGIPDPE 420 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V I A QV+D+ + + + R L+T LTK+ AEDL YL + ++ +Y+HS++ T Sbjct: 421 VLIVPASGQVDDLLERLREVIGKDERALVTTLTKKGAEDLGGYLVDLGLKAKYIHSDLNT 480 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER ++I++LR G VLVG+NLLREG+D+PE LVAILDAD+EGFLRS SLIQ +GRA Sbjct: 481 FERADLIKELRSGGVSVLVGVNLLREGMDLPEVTLVAILDADREGFLRSYRSLIQVMGRA 540 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVNSKV+LYAD +T SI A+DET RRRE Q+++N++HNI P++V +I ++ L+ Sbjct: 541 ARNVNSKVVLYADEMTDSISKAVDETVRRRELQIKYNEEHNIVPKTVYREIRTLLPEELM 600 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 +DA + L ++ + L + M A + L FE AA +RD Sbjct: 601 KDALPKGPDKWEETLEGMEE------RDLERLMWEAVEKLQFERAATLRD 644 >gi|161528613|ref|YP_001582439.1| excinuclease ABC subunit B [Nitrosopumilus maritimus SCM1] gi|160339914|gb|ABX13001.1| excinuclease ABC, B subunit [Nitrosopumilus maritimus SCM1] Length = 650 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/660 (50%), Positives = 458/660 (69%), Gaps = 26/660 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 IT F++ ++Y P+GDQP AI QL+KG+ + VQ LLGVTGSGKTF++A VI + + Sbjct: 4 ITQFELASEYAPTGDQPQAIDQLVKGVKDK-TVQTLLGVTGSGKTFSVANVIARTGKNTL 62 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLYSE K FFP N V YFVSYYDYYQPE+Y+P+TDTYIEK++ +NE+I++ Sbjct: 63 VISHNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQVNEKIEK 122 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R AT LL I+VS+VSCIY +G+ + + + + + GD +++ EL+ L+ +Y Sbjct: 123 LRLEATAMLLSGEPTIIVSTVSCIYSLGNPQDWEDLAITVTAGDEIKRNELIRQLIDARY 182 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D + G FRV GD+I+I P++ ED+ R+SMFG+++E+IS ++ ++ + + + Sbjct: 183 ERNDTEVAPGNFRVKGDTIDITPAYSEDLV-RISMFGDEVEKISVLDHVSLKEKKKINQM 241 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 KI+ HY+ + A++ IK+ELK RL EL + LE QRLE R YDLEM+E G Sbjct: 242 KIFPAKHYLIAKDVRKKAVQSIKDELKKRLPELNE----LEKQRLEMRTKYDLEMIEELG 297 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+ GR G+ L ++ +D LL +DESHVT+PQ+ GMY+GD RK L Sbjct: 298 YCSGIENYSRHFDGRKAGQKAFCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDHSRKKEL 357 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 YGFRLPS DNRPL+FEE+ TI VSATP +E ++ I EQ++RPTGL+DP Sbjct: 358 VTYGFRLPSAYDNRPLKFEEFEEYVRNTIFVSATPADYE-KKISSQIAEQLVRPTGLLDP 416 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VEIR + Q++D+ +EIN R+L+T LTKRMAEDL EYL ++ +RVRYMHSE++ Sbjct: 417 EVEIRPTKNQMDDLIEEINKKVANSERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSEIE 476 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 L+R E+IR LRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLR+ TSLIQT GR Sbjct: 477 GLQRTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTFGR 536 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N VI+YADT+T+S++ A++ET RRREKQ+++NK +NI P+++ + + E + Sbjct: 537 AARNENGNVIMYADTVTQSMKNAMNETKRRREKQMKYNKDNNITPKTIIKSVPEQV--TT 594 Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L+D+ +T +I+ D + L QM +++L+FE A RD IKRL+ Sbjct: 595 LDDSKLKSTHDIATD--------------IIDLEAQMKKYSEDLDFERAIECRDRIKRLE 640 >gi|189462714|ref|ZP_03011499.1| hypothetical protein BACCOP_03411 [Bacteroides coprocola DSM 17136] gi|189430583|gb|EDU99567.1| hypothetical protein BACCOP_03411 [Bacteroides coprocola DSM 17136] Length = 674 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/669 (50%), Positives = 462/669 (69%), Gaps = 19/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIAQL +G+ S Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELVSDYQPTGDQPEAIAQLTEGVKSGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL RND IV+SSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRNDVIVISSVSCIYGMGNPADFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEI---FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 DI + RG FRV GD+++I + HL RV + ++I+ I E P++G + + + Sbjct: 183 NDIELNRGNFRVKGDTVDISLAYTDHL----LRVIFWDDEIDAIEEIDPVSGHRTGSFDE 238 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 KIY + ++T + + A+ I+++L ++ E++G+ EA+RL +R+TYD+EML Sbjct: 239 YKIYPANLFMTTKESTLKAIHQIEDDLTKQVAFFEEQGKPYEAKRLYERVTYDMEMLREL 298 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSRY GR PG P L ++ P+D L+ +DESHV++PQI MY GD RK Sbjct: 299 GHCSGIENYSRYFDGREPGSRPYCLLDFFPKDFLIVIDESHVSVPQIRAMYGGDRARKEN 358 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L EYGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +G++VEQ+IRPTGL+D Sbjct: 359 LVEYGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGVVVEQVIRPTGLLD 418 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +E+R + QV+D+ +EI + R+L+T LTKRMAE+LTEYL NIR Y+HSEV Sbjct: 419 PIIEVRPSLNQVDDLMEEIQQRIELKERVLVTTLTKRMAEELTEYLLRHNIRCTYIHSEV 478 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 TLER++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT G Sbjct: 479 DTLERVQIMEDLRQGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 538 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEV 732 RAARNVN KVI+YAD IT S++ IDET RRREKQL +N+ H I PQ +K+ ++E Sbjct: 539 RAARNVNGKVIMYADKITDSMKQTIDETNRRREKQLAYNEAHGITPQQIKKNRNNALLET 598 Query: 733 IDPI-------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 +E+ + D +SK++ + ++ RK M AA LNF EAA+ Sbjct: 599 TGETSSKQPKAYVENTEHIQAAADPIVQYMSKEQLQKSMERTRKLMQEAAKKLNFIEAAQ 658 Query: 786 IRDEIKRLK 794 RDE+ RL+ Sbjct: 659 YRDELLRLE 667 >gi|15612106|ref|NP_223758.1| excinuclease ABC subunit B [Helicobacter pylori J99] gi|8134789|sp|Q9ZKA0|UVRB_HELPJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|4155631|gb|AAD06620.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99] Length = 658 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/662 (49%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR YDLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEYDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI +G R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA T+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRERAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|325997968|gb|ADZ50176.1| Excinuclease ABC subunit B [Helicobacter pylori 2017] Length = 658 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/662 (49%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA VI +P ++M Sbjct: 3 LFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI +G R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|210135272|ref|YP_002301711.1| excinuclease ABC subunit B [Helicobacter pylori P12] gi|210133240|gb|ACJ08231.1| excinuclease ABC subunit B [Helicobacter pylori P12] Length = 658 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/662 (49%), Positives = 459/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TTG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|307637782|gb|ADN80232.1| Excinuclease ABC subunitB [Helicobacter pylori 908] Length = 658 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/662 (49%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA VI +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI +G R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|323342415|ref|ZP_08082647.1| excision endonuclease subunit UvrB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463527|gb|EFY08721.1| excision endonuclease subunit UvrB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 663 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/656 (50%), Positives = 447/656 (68%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQ AI +L +GI +K Q+LLG TG+GKTFT+++VI + RP +V Sbjct: 9 FELVSKFDPKGDQVRAIGELTQGILDGKKEQVLLGATGTGKTFTVSQVIAKLNRPTLVFV 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYIEK S IN+++D +RH Sbjct: 69 HNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYLPGSDTYIEKSSMINQELDMLRH 128 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A S+L+R D I+V+SV+ IY Y +M+ +++G + +++L+ LVK+QY R Sbjct: 129 AAQNSVLQRRDTIIVASVASIYATADPSYYKEMLYVMRVGQEITREDLMRDLVKRQYIRN 188 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI GTFRV GD IE+ +D+ RV FG++I+ I E +TG I+ Sbjct: 189 DIEQSVGTFRVRGDVIEVVRGDRDDIVVRVEFFGDEIDRIVEVDRITGNVREGYLVYDIF 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + A I+ EL RL E E +L+E QRL+QR YDLE L G C Sbjct: 249 PANQYARDMDQIRPAADRIEAELHERLAYFESENKLVEHQRLKQRTEYDLEALREFGMCS 308 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS ++ GR+P + P TLF+Y P+D L VDESHV++PQ+ GMY GD RK TL EY Sbjct: 309 GVENYSMHIDGRDPNQRPYTLFDYFPDDYLFIVDESHVSLPQVRGMYNGDQSRKRTLVEY 368 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS M+NRP+ FEE+ ++ TI VSATPG +ELE+ +VEQIIRPTGL+DP +E Sbjct: 369 GFRLPSAMNNRPMTFEEFTSVQKQTIYVSATPGDYELEKVNHQVVEQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I+ ++ QV+D+ D+I ++ R+L+T LT +MA+DLT YL E I+V Y+H E KTLE Sbjct: 429 IKKSQGQVDDLIDQILERRERDERVLITTLTVKMAQDLTNYLLETGIKVAYLHHETKTLE 488 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEI+RDLRLGK+DV+VGINLLREGLD+PE L+AILDADKEGFLRS SL+Q +GRAAR Sbjct: 489 RIEILRDLRLGKYDVVVGINLLREGLDLPEVSLIAILDADKEGFLRSYRSLVQIVGRAAR 548 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N VI+YAD IT S++ IDET RRR+ Q+ +N+K+ I PQ++K++I +VI E Sbjct: 549 NSNGHVIMYADRITDSMKKTIDETKRRRDIQIAYNEKNGITPQTIKKEIRDVIAG--KET 606 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 A T+ + + KK ++ L K+M AA L+FE AA++RD + +K+S Sbjct: 607 AELTHRIRNNKGKRKDKKAVDELIQKLEKEMREAAALLDFERAAQLRDIVMEMKAS 662 >gi|108563478|ref|YP_627794.1| excinuclease ABC subunit B [Helicobacter pylori HPAG1] gi|122980471|sp|Q1CSF2|UVRB_HELPH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|107837251|gb|ABF85120.1| excinuclease ABC subunit B [Helicobacter pylori HPAG1] Length = 658 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKNFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|149193929|ref|ZP_01871027.1| excinuclease ABC subunit B [Caminibacter mediatlanticus TB-2] gi|149135882|gb|EDM24360.1| excinuclease ABC subunit B [Caminibacter mediatlanticus TB-2] Length = 676 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/677 (49%), Positives = 458/677 (67%), Gaps = 28/677 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L I + L+GVTGSGKTFTMA +IE +Q P +++ Sbjct: 2 FKLNSTYKPTGDQPKAIEKLTNCIKKGSRYNTLIGVTGSGKTFTMANIIEKLQIPTLILT 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN +++R+R Sbjct: 62 HNKTLAAQLYSEFKEFFPQNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINAELERLRV 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLE +D IVV+SVS +YG+G+ Y +M+ ++ +GD + Q++ + L+ Y R Sbjct: 122 SATASLLEYDDVIVVASVSALYGLGNPLEYKKMVAKIAVGDEINQRDFMLRLLSMGYTRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ I+IFP++ ED RV FG++I+ I +T +KI++++ I IY Sbjct: 182 DKYFERGNFRVNGEVIDIFPTYFEDDVIRVEFFGDEIDRIYTIDYITNEKIQDIKEITIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A+ I++EL RL E E +G+++E QRL+QR +DLEMLETTG+C+ Sbjct: 242 AANQFIVGANRLAEAINSIEKELLHRLREFEAQGKIIEYQRLKQRTEFDLEMLETTGTCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ PGE P +L +Y + L+ VDESHV++PQ GMY GD RK L Sbjct: 302 GIENYARHLTGKKPGETPYSLLDYFEIKGKPYLVIVDESHVSLPQFRGMYNGDRARKEVL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRP +F+E+ P + VSATPG +ELE I EQIIRPTGL+DP Sbjct: 362 VEYGFRLPSALDNRPYKFDEFINKAPHYLFVSATPGEFELE-ISTCIAEQIIRPTGLLDP 420 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE+ ++ QV +YD+ +G R+L+T LTK+MAE+L +Y E ++V+YMHS++ Sbjct: 421 VVELYPSKDQVATLYDKAKEVISKGERVLVTTLTKKMAEELQKYYLELGLKVKYMHSDID 480 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G+FD+L+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 481 VVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 540 Query: 678 AARNVNSKVILYA--------------------DTITKSIQLAIDETTRRREKQLEHNKK 717 AARNVN +V+++A D ITKS+ AI T +RR KQ E+NK Sbjct: 541 AARNVNGRVLMFADKITDPIIIDDNLEDLEKIKDKITKSMYNAIKTTIQRRIKQKEYNKL 600 Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 HNI P+S K +D L E+ + + ++ K LK L++QM AA N Sbjct: 601 HNITPKSTIRK----LDKSLKEEGYEAISKELKNKNKIPPREKKEILKKLKQQMQEAAKN 656 Query: 778 LNFEEAARIRDEIKRLK 794 L FE+AA +RD+IK LK Sbjct: 657 LEFEKAAMLRDKIKELK 673 >gi|224373160|ref|YP_002607532.1| excinuclease ABC subunit B [Nautilia profundicola AmH] gi|223589676|gb|ACM93412.1| excinuclease ABC, B subunit [Nautilia profundicola AmH] Length = 676 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/677 (48%), Positives = 459/677 (67%), Gaps = 28/677 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L I + L+GVTGSGKTFTMA +I+ +Q P +++ Sbjct: 2 FKLNSNFKPTGDQPQAIEKLSGCIKQGNRYNTLIGVTGSGKTFTMANIIQKLQIPTLILT 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN +++R+R Sbjct: 62 HNKTLAAQLYSEFKEFFPQNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINAELERLRV 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLLE +D IVV+SVS +YG+G+ Y +M+ ++ +GD + Q++ + L+ Y R Sbjct: 122 SATASLLEYDDVIVVASVSALYGLGNPIEYKKMVAKIAVGDEINQRQFMMRLLSMGYTRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ I+IFP++ ED RV FG++I+ I +T +K+++++ I IY Sbjct: 182 DKYFERGNFRVNGEVIDIFPTYFEDDVIRVEFFGDEIDRIYTIDYMTNEKLQDLKEITIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A++ I++EL RL E E++G+++E QRL+QR +DLEMLETTG+C+ Sbjct: 242 AANQFIVGADRLAEAIQSIEKELGERLKEFEQQGKIIEHQRLKQRTEFDLEMLETTGTCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENYSR+LTG+ PGE P +L +Y + L+ VDESHV++PQ GMY GD RK L Sbjct: 302 GIENYSRHLTGKKPGETPYSLLDYFEIKGKPYLVIVDESHVSLPQFRGMYNGDRARKEVL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRP +F+E+ P + VSATPG +ELE + EQIIRPTGL+DP Sbjct: 362 VEYGFRLPSALDNRPYKFDEFINKAPHYLFVSATPGEYELE-ISTCVAEQIIRPTGLLDP 420 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE+ ++ QV ++D ++G ++L+T LTK+MAE+L +Y E ++V+YMHS++ Sbjct: 421 IVELLPSQNQVATLFDRAKEVIEKGEKVLVTTLTKKMAEELQKYYLEMGLKVKYMHSDID 480 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G+FD+L+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 481 VVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 540 Query: 678 AARNVNSKVILYA--------------------DTITKSIQLAIDETTRRREKQLEHNKK 717 AARNVN +V+++A D IT S+ AI T RR KQ E+NKK Sbjct: 541 AARNVNGRVLMFAGKIEEPVVLDDDLEVLEKIKDKITGSMYRAIKTTITRRIKQKEYNKK 600 Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 H I P+S K +D L E+ + + K+ KA + LRK+M+ AA Sbjct: 601 HGIIPKSTIRK----LDKSLKEEGYEAIAKELKNKNKIPAKEKKAIIAKLRKEMNEAAKA 656 Query: 778 LNFEEAARIRDEIKRLK 794 L FE+AA +RD+I+ LK Sbjct: 657 LEFEKAAMLRDKIEELK 673 >gi|15645728|ref|NP_207905.1| excinuclease ABC subunit B [Helicobacter pylori 26695] gi|2499097|sp|P94846|UVRB_HELPY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|2314265|gb|AAD08158.1| excinuclease ABC subunit B (uvrB) [Helicobacter pylori 26695] Length = 658 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L +G R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|118475355|ref|YP_892046.1| excinuclease ABC subunit B [Campylobacter fetus subsp. fetus 82-40] gi|189037953|sp|A0RPB3|UVRB_CAMFF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|118414581|gb|ABK83001.1| excinuclease ABC, B subunit [Campylobacter fetus subsp. fetus 82-40] Length = 658 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/658 (50%), Positives = 457/658 (69%), Gaps = 9/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ A+ ++ I S K +LLGVTGSGKTFTMA VI+ + P ++M Sbjct: 4 FEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLE +D +VV+SVS YG+G+ Y M++ L +G S+ QKELL LV YKR Sbjct: 124 SATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD ++I+P++ D A R+ FG++++ + F L ++ ++V +Y Sbjct: 184 DAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKRTKDVSKFILY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A S ++ L A+K I+ EL+ RL EKE RL+E QRL+QR+ +DLEML +TGS + Sbjct: 244 ATSQFIVGENRLKQAIKDIELELEDRLAFYEKENRLVEYQRLKQRVEFDLEMLSSTGSTK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+RYLTG+ GE P +LF+Y +D L+ VDESHV++PQ GMY GD RK L Sbjct: 304 GVENYARYLTGQKAGETPYSLFDYFEVSGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+ +E+ + + VSATP +E++ QG + EQI+RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLKLDEFIAKKANYLFVSATPNQYEIDLSQGHVYEQILRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+ S+ QVE ++D +G R+L+T LTK+M+E+LT Y E I+V+YMHS++ Sbjct: 424 RIEVISSDNQVEVLFDRAKAVIARGERVLVTTLTKKMSEELTRYYQELGIKVKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER E+IR LR G+FD+LVGINLLREGLD+PE LVA+LDADKEGFLRS+TSLIQT+GR Sbjct: 484 AVERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN VIL+A+ IT S++ AID T RR+ Q ++NKK+ I P+S + + Sbjct: 544 AARNVNGTVILFANKITNSMKEAIDTTEARRKYQGDYNKKYGITPRSASRNLEDS----- 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L++ N+ A++L +A + K LRKQM AA NL FE+AA +RDEI +L+ Sbjct: 599 LKEEDLPNLYNKAKKLEKMPASERAKIVKELRKQMLEAAKNLEFEKAAALRDEIAKLR 656 >gi|208435009|ref|YP_002266675.1| excinuclease ABC subunit B [Helicobacter pylori G27] gi|208432938|gb|ACI27809.1| excinuclease ABC subunit B [Helicobacter pylori G27] Length = 663 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/662 (49%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 8 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 67 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 68 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 128 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 424 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 484 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 485 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 604 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 605 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 660 Query: 794 KS 795 ++ Sbjct: 661 RT 662 >gi|217076276|ref|YP_002333992.1| excinuclease ABC subunit B [Thermosipho africanus TCF52B] gi|226695570|sp|B7IEY7|UVRB_THEAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|217036129|gb|ACJ74651.1| excinuclease ABC, B subunit [Thermosipho africanus TCF52B] Length = 661 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/654 (49%), Positives = 461/654 (70%), Gaps = 10/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ PSGDQP AI +L++G+ ++Q LLGVTGSGKTFTMAKV+E + +P ++++ Sbjct: 2 FKVYSDFSPSGDQPEAIKKLVEGLQKGYRIQTLLGVTGSGKTFTMAKVVEKVGKPTLIIS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK+FFP N VE+FVSYYDYYQPEAY+P D YIEK + INE I++MR Sbjct: 62 PNKTLAAQLYSEFKSFFPENKVEFFVSYYDYYQPEAYIPTRDLYIEKNADINEVIEKMRI 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +S++ R D IVV+SVS IY G + +S + L +G ++ + L+ L + Y+R+ Sbjct: 122 SAIKSIMTRKDVIVVASVSAIYNCGDPKDFSDLNFVLSVGQEIDLEGFLTHLARIGYERK 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + GTFRV GD IEI+P + +D R+ +FG++I+ I F PL + + ++ + IY Sbjct: 182 EEVALGGTFRVKGDVIEIYPRY-QDEGIRIELFGDEIDSIYTFDPLNRKILEKLDRVVIY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++T + A+K I +EL+ +L +K+G+ LEA+RL+QR D+E+L G C Sbjct: 241 PTKEFITTEEKIQRAVKSILKELEEQLEYFKKQGKHLEAERLKQRTMNDIELLTALGYCS 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GRNPG+PP +L +Y +D L+F+DESH+TIPQ+ MYRGDF RK L +Y Sbjct: 301 GIENYSRHFDGRNPGDPPYSLLDYFGDDYLVFIDESHITIPQLRAMYRGDFSRKKNLVDY 360 Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 GFRLP DNRPL+FEE WN ++ I VSATPG +E+ Q +VEQIIRPTGLVDP V Sbjct: 361 GFRLPCAYDNRPLKFEEFWNKVK-NVIFVSATPGDFEINNSQQ-VVEQIIRPTGLVDPEV 418 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R L+TVLTK+ AE L EYL E I+ Y+HSE+ T+ Sbjct: 419 EVRPTQNQIDDLVNEIAKIRKRNERALVTVLTKKTAEKLAEYLIEMGIKALYIHSELDTI 478 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+E+++ LR G +V+VG+NLLREGLD+PE LVAILD+D EGFLRS+T+LIQ IGR A Sbjct: 479 ERVEVLKKLRRGDVEVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLIQIIGRVA 538 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738 RN+N KVI+YAD IT +++ AIDET RRR+ Q+E+NKKH I P+++ + + E I + Sbjct: 539 RNINGKVIMYADKITPAMKKAIDETNRRRKIQIEYNKKHGITPKTIIKPLDEEIFKQFMT 598 Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 ++ +I + SLS ++ ++ L ++M+ AA L +E+AAR+RDE+ Sbjct: 599 DEDEEKEEIKTIFELKESLSIEE---YIALLEEEMYKAASELRYEDAARLRDEL 649 >gi|46199833|ref|YP_005500.1| excinuclease ABC subunit B [Thermus thermophilus HB27] gi|46197460|gb|AAS81873.1| excinuclease ABC subunit B [Thermus thermophilus HB27] Length = 668 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/647 (51%), Positives = 448/647 (69%), Gaps = 11/647 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AIA L++ + E+ LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ Sbjct: 12 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 71 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 72 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 131 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D IVV+SVS IYG+G Y + ++ G ++ LL L++ Y+R DI + G Sbjct: 132 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREALLERLLELGYQRNDIDLSPGR 191 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ +EIFP++ E RV +FG+++E I + +P+TG+++R + ++ +HY++P Sbjct: 192 FRARGEVLEIFPAY-ETEPIRVELFGDEVERILQVHPVTGERLRELPGFVLFPATHYLSP 250 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 + KE + R+ E+ G +L A+RL++R YDLEML G+C +ENY+RY Sbjct: 251 EGLEEILKEIEKELWE-RVRYFEERGEVLYAERLKERTLYDLEMLRVMGTCPGVENYARY 309 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS + Sbjct: 310 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSAL 369 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ + VSATPG +EL G +VEQIIRPTGL+DP V ++ Q+ Sbjct: 370 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 428 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 D+ + I A +G R L+TVLT RMAE+LT +L E IR RY+H E+ ER +IRDL Sbjct: 429 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDL 488 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG +D LVGINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAARN +V L Sbjct: 489 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 548 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YAD +++++Q AI+ET RRR Q +N +H I P++V++++ VI P E+A Sbjct: 549 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 603 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LS + + + L M AA+ L+FE AAR+RDEI+ L++ Sbjct: 604 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 647 >gi|57242081|ref|ZP_00370021.1| excinuclease ABC, B subunit [Campylobacter upsaliensis RM3195] gi|57017273|gb|EAL54054.1| excinuclease ABC, B subunit [Campylobacter upsaliensis RM3195] Length = 656 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/660 (50%), Positives = 445/660 (67%), Gaps = 13/660 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+Q+++ PS DQ AI ++K I + K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 FQLQSEFKPSFDQEEAIMGIVKSIKAGHKYQTLLGVTGSGKTFTMANVIKELAMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FFPHN +EYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFPHNHIEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ + + QK+LL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPSEYEGMVLIFEENMQISQKDLLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD ++I+P++ ED R+ FG+D+E I + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVNGDLVDIYPAYYEDEVVRLEFFGDDLERIYHYNILENKKTKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IKEEL RL E E +L+E QRL+QR+ +DLEML++TG C+ Sbjct: 242 PTSQFSVGEARLKEAIKAIKEELNARLAYFENENKLVEYQRLKQRVEFDLEMLQSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGQTPYTLFDYYAIKKRPFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSGKNIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE +YDE + RIL+TVLTK++AE+L+ Y E +RV+YMHS Sbjct: 419 LDPIIELKDSTNQVEILYDEAKKVIARNERILVTVLTKKLAEELSRYYLELGLRVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER E+IR LR G+FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNELIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q AID T+ RR+ Q E+NKKH I P SVK + + + Sbjct: 539 MGRAARNVNGKVLLFCQKITKSMQEAIDTTSERRKLQEEYNKKHKITPTSVKRNLEQSLK 598 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ED A+ + + +K LRK+M AA NL FE+AA +RDEI++ K Sbjct: 599 N---EDLGEI-YRKGAKFEKMPANERAKFVKELRKEMLEAAKNLEFEKAAALRDEIRKFK 654 >gi|332297756|ref|YP_004439678.1| UvrABC system protein B [Treponema brennaborense DSM 12168] gi|332180859|gb|AEE16547.1| UvrABC system protein B [Treponema brennaborense DSM 12168] Length = 665 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/666 (49%), Positives = 452/666 (67%), Gaps = 21/666 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y PSGDQP AI +L++G + Q L GVTGSGKTFTMAK+IE +QRP ++++ Sbjct: 4 FKVVAPYEPSGDQPQAIERLVEGFLRGDTYQTLKGVTGSGKTFTMAKIIEKVQRPTLIIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L+AQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP D YIEK++SIN++IDRMR Sbjct: 64 HNKTLSAQLYREFKSFFPDNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SL+ER D IVV++VSCIYG+G E Y M + ++ G +++ LV QY+R Sbjct: 124 AATYSLMERRDVIVVATVSCIYGLGMPELYKDMRIHIEKGQTLDPAAFGRQLVTLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D + RG FR+ GD +E++P+++E D A+R+ + +I I F ++G+ I ++ I Sbjct: 184 DAVLDRGRFRIRGDVLEVYPAYMETDEAYRIELDWEEIVRIRRFNTISGEIIEELDETTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y H+V P L +A IK E++ R+ L++ G++LEA+RL+ R +YDLEML G C Sbjct: 244 YPAKHFVVPPEMLKSATDRIKSEMEDRVQFLQQTGKILEAERLKTRTSYDLEMLSEMGYC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS ++GR GEPP TL Y P D+L +DE+HVT+ QI MY GD RK L + Sbjct: 304 PGIENYSGPISGRRSGEPPATLLHYFPSDTLCLIDEAHVTVSQIGAMYEGDRSRKQNLID 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL++ E+ + TI V+ATP E+++ +VEQ+IRPTGL+DP V Sbjct: 364 FGFRLPSALDNRPLKYAEFESMISQTIYVTATPREQEIKRSTQ-VVEQLIRPTGLLDPIV 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q+ED+Y EI +G R LL LTK+MAEDLTEYL ++VRY+HSEV+T+ Sbjct: 423 EVRPSEGQMEDIYGEIKERIARGERCLLLTLTKKMAEDLTEYLDGLGLKVRYIHSEVETI 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI++ LR G+FDVL+GINLLREGLD+PE +AILDADK GFLRS TSLIQ IGRAA Sbjct: 483 ERVEILKGLRSGEFDVLIGINLLREGLDLPEVSFIAILDADKIGFLRSATSLIQIIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RN N V++YAD + +++ AI+ET RRE Q +N H I P +V + + +++ Sbjct: 543 RNQNGMVVMYADRESDAMKAAIEETVHRREVQEAYNTAHGITPATVSKAVADILVRQNED 602 Query: 734 --DPILLEDAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 + E A + N+ + AQ+ L +K+L KQM AD L FE+AA +RD Sbjct: 603 KKAAVETETAVLRKSVNLFVPAQRRKL--------IKALEKQMSEFADCLEFEQAAAVRD 654 Query: 789 EIKRLK 794 EI +K Sbjct: 655 EIAAIK 660 >gi|317012887|gb|ADU83495.1| excinuclease ABC subunit B [Helicobacter pylori Lithuania75] Length = 658 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|196230715|ref|ZP_03129576.1| excinuclease ABC, B subunit [Chthoniobacter flavus Ellin428] gi|196225056|gb|EDY19565.1| excinuclease ABC, B subunit [Chthoniobacter flavus Ellin428] Length = 733 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/714 (47%), Positives = 462/714 (64%), Gaps = 66/714 (9%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P GDQ AIA+L K I + + Q LLGVTGSGKTFT A VI+ +++P +V++ Sbjct: 3 FQLASRYQPKGDQAQAIAKLTKSIEAGNRHQTLLGVTGSGKTFTAANVIQNVEKPTLVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP NAVEYFVSY+DYYQPEAY+PRTDTYIEK+SSINE+I+R+R Sbjct: 63 HNKTLAAQLYSEFKQFFPENAVEYFVSYFDYYQPEAYIPRTDTYIEKDSSINEEIERLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL R D IV++SVSCIYG+GS E Y M++ +K+G + ++ LS LV Y+R Sbjct: 123 STTSSLLSRRDVIVIASVSCIYGLGSPEDYMNMLLTIKVGQQISREAALSKLVDMLYERN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DIG RG FRV GD++E+ P++L++ A R+ FG++++ I+ F PLTG + I +Y Sbjct: 183 DIGFNRGKFRVRGDTVEVHPANLDEEAIRIEFFGDEVDRITRFDPLTGHGHEQLTMITLY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VTP + AM IKEEL R+I EK G LLEAQR++ R YDLEM++ G C Sbjct: 243 PAKQFVTPADKMRRAMGTIKEELAERIIHFEKHGHLLEAQRIKMRTEYDLEMMQEMGFCS 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG P TL ++ P+D LL +DESH TIPQ+ GMY GD RK+ L +Y Sbjct: 303 GIENYSRHLSGRPPGSRPFTLLDFFPKDYLLVIDESHATIPQVGGMYEGDKSRKSVLVDY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL---------------EQCQGIIV 545 GFRLPS +DNRPLRF E+ + + +SATP +E+ +Q + + Sbjct: 363 GFRLPSALDNRPLRFPEFMEMTGQALYISATPAEFEIKNSIVGNTSYIPHKRQQSEQVGK 422 Query: 546 EQII-----------RPTGLVDPPVE----------------------------IRSART 566 E+ + G + PVE IR + Sbjct: 423 EEDVPFARGRCVAGAAALGAPNTPVEEFDVHTPGRPLVVEQIIRPTGLLDPRITIRPLKG 482 Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 Q+++ + + R+L+T LTKR AEDL++YL + ++VRY+HS++ T+ER+EI+R Sbjct: 483 QIDETLELCRQRIEVKERVLITTLTKRTAEDLSDYLRDVGLKVRYLHSDIDTIERVEILR 542 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LR +FD+LVGINLLREGLD+PE LV ILDADKEG+LRS+TSLIQT GRAAR+VN +V Sbjct: 543 ALRAAEFDILVGINLLREGLDLPEVSLVCILDADKEGYLRSQTSLIQTAGRAARHVNGEV 602 Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL----LEDAA 742 L+ADT+TKS++ + T RR +Q+ +N+KH I P+SV+ + E + IL LE++ Sbjct: 603 YLFADTVTKSMEALLAITEYRRARQIAYNEKHGITPRSVQRAVQESLHTILKGRELEESV 662 Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D SL++ L+ L ++M +AA+NL +E+AA +RD+I LK+ Sbjct: 663 VREGGGD---FSLTET-----LRELEQEMMIAANNLEYEKAALLRDQIAELKAG 708 >gi|320451473|ref|YP_004203569.1| excinuclease ABC subunit B [Thermus scotoductus SA-01] gi|320151642|gb|ADW23020.1| excinuclease ABC, subunit B [Thermus scotoductus SA-01] Length = 666 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/654 (52%), Positives = 456/654 (69%), Gaps = 13/654 (1%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P GDQP AI +LL+ + E+ LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ Sbjct: 10 PKGDQPKAIRELLEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L +EF+ FP NAVEYF+SYYDYYQPEAYVP D YIEK++SIN +I+R+RHS TRSLL Sbjct: 70 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D +VV+SVS IYG+G Y + ++ G ++ LL L++ Y R D+ + G Sbjct: 130 RKDVVVVASVSAIYGLGDPREYRARNLVVERGAVYPREALLERLLELGYTRNDLDLSPGR 189 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 FR G+ +EIFP++ E RV +FG+++E I + +P+TG+++R + ++ +HY++P Sbjct: 190 FRARGEVLEIFPAY-ETEPLRVELFGDEVERILQVHPITGERLRELPGFVLFPATHYLSP 248 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 L ++ I++EL R+ E+ G +L AQRL++R YDLEML G+C +ENY+RY Sbjct: 249 E-GLEGVLQEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS + Sbjct: 308 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSAL 367 Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568 DNRPLRFEE+ P + VSATPG +ELE G +VEQIIRPTGL+DP V ++ Q+ Sbjct: 368 DNRPLRFEEFLERVPQVVFVSATPGPFELEHS-GALVEQIIRPTGLLDPLVVVKPTENQI 426 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 D+ + I AQ+G R L+TVLT RMAE+LT +L E +R RYMH E+ ER +IRDL Sbjct: 427 LDLMEGIRERAQRGERTLVTVLTVRMAEELTAFLQEHGVRARYMHHELDAFERQALIRDL 486 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 RLG FD LVGINLLREGLDIPE LVAILDADK GFLRS+ SLIQTIGRAARN +V L Sbjct: 487 RLGHFDALVGINLLREGLDIPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAKGEVWL 546 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748 YADTI+++++ AI ET RRR Q +N++H I P++V++++ +I P + A + Sbjct: 547 YADTISEAMERAIRETNRRRALQEAYNQEHGIVPETVRKEVRAIIRPEEYGEKAPVE-AW 605 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802 + + L K + L M AA+ L+FE AAR+RDE++ L++ QGL Sbjct: 606 EGEDL-------KERIAELELAMWQAAEALDFERAARLRDELRALEAR--LQGL 650 >gi|289581736|ref|YP_003480202.1| excinuclease ABC subunit B [Natrialba magadii ATCC 43099] gi|289531289|gb|ADD05640.1| excinuclease ABC, B subunit [Natrialba magadii ATCC 43099] Length = 686 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/654 (50%), Positives = 446/654 (68%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI QL G +S + Q LLGVTGSGKT T++ IE +Q+P +V+A Sbjct: 19 FEVDAPFEPAGDQPEAIEQLADGFNSGMEKQTLLGVTGSGKTNTVSWTIEEVQKPTLVIA 78 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SIN++IDR+RH Sbjct: 79 HNKTLAAQLYEEFRNLFPENAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINDEIDRLRH 138 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R D IVV+SVS IYG+G +Y M ++L++G+ V + +LL LV Y+R Sbjct: 139 SATRSLLTREDVIVVASVSAIYGLGDPRNYIDMSLRLEVGEEVGRDDLLKQLVDLNYERN 198 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++EI+P + A RV ++G++I+ + + PL G + + + ++ Sbjct: 199 DVDFTQGTFRVRGDTVEIYPMYGR-YAVRVELWGDEIDRMVKVDPLEGTTQGDQQAVLVH 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P P L AM I+++L R+ ++ G ++ QR+E+R T+DLEM++ TG C Sbjct: 258 PAEHYSIPEPKLERAMDEIRDDLDSRISYFDRTGDMIAGQRIEERTTFDLEMMQETGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS YL+ R GE P TL +Y P+D L +DESH TIPQI G Y GD RK +L E Sbjct: 318 GIENYSVYLSDRESGEAPYTLLDYFPDDFLTVIDESHQTIPQIRGQYAGDKSRKDSLVEN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T+ VSATP +E E + I EQI+RPT LVDP + Sbjct: 378 GFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPSDYEREHSER-IAEQIVRPTHLVDPEIS 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A Q++D+ D I+ + R L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 437 VSPASGQIDDLMDRIDDRIDRDERTLVTTLTKRMAEDLTEYLEEAGVNVEYMHDETDTLE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR LRLG+ DVLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRAAR Sbjct: 497 RHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VILYAD + +++ AI+ET RRR Q E+N++H + P ++ + + E P Sbjct: 557 NVNGEVILYADDPSNAMKSAIEETKRRRRIQQEYNEEHGLEPTTIDKAVSETNLP----G 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + T + ++L + + ++ L +M AA NL FE AA IRD I+ ++ Sbjct: 613 SKTDTSQVSGRELE-DEDEAARYIDELETRMDEAASNLEFELAADIRDRIREVR 665 >gi|167755025|ref|ZP_02427152.1| hypothetical protein CLORAM_00529 [Clostridium ramosum DSM 1402] gi|237735250|ref|ZP_04565731.1| excinuclease ABC subunit B [Mollicutes bacterium D7] gi|167705075|gb|EDS19654.1| hypothetical protein CLORAM_00529 [Clostridium ramosum DSM 1402] gi|229380995|gb|EEO31086.1| excinuclease ABC subunit B [Coprobacillus sp. D7] Length = 657 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/656 (52%), Positives = 452/656 (68%), Gaps = 5/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P GDQ AI QL+ GI +K Q+LLG TG+GKTFT++ VI A+ +P +V+A Sbjct: 4 FKLVSPFSPMGDQEEAIKQLVAGIKEGKKEQVLLGGTGTGKTFTVSNVIAAVNKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P D YI+K + N +I+ +R Sbjct: 64 HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPGRDLYIDKNAKTNYEIEMLRS 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A SL+ER D IVV+SV+ IYG+G+ E Y +MI L++ +++KELL+ LV +QY+R Sbjct: 124 AAMNSLIEREDVIVVASVASIYGLGNPEQYKEMIFSLRVDQDIDRKELLTYLVDRQYQRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI +GTFRV GD IEI P H E R+ +FG+ +E ISE PLTG + T IY Sbjct: 184 DIEQTKGTFRVRGDVIEIVPGHTESWLIRIELFGDTVERISEVDPLTGHVLGVYNTYTIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 YVT + + A I EL+ RL + E +LLE +RLEQR +D+EML G C Sbjct: 244 PAYGYVTKKEQILKACDTITAELENRLETFKAETKLLEHERLEQRTRHDVEMLREVGMCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR+ G+ P TL +Y P+D L+ VDESHV +PQ+ GMY GD RK TL EY Sbjct: 304 GIENYSRHIDGRDEGQRPYTLIDYFPKDFLMIVDESHVMLPQVRGMYNGDRSRKETLVEY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + I VSATPG +ELE + +VEQIIRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELEHVENKVVEQIIRPTGLLDPVIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ EI + + R+L+T LTKRMAEDL+ YL E I+V Y+HS+ KTLE Sbjct: 424 VRPTKDQIDDIISEIKIRQDRNERVLITTLTKRMAEDLSAYLKELGIKVAYLHSDTKTLE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+RDLRLGK+DVLVGINLLREGLD+PE LV ILDADKEGFLRS SLIQTIGRAAR Sbjct: 484 RTEILRDLRLGKYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSNRSLIQTIGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739 N N +VI+Y D IT S+ AI+ET RRR+ Q +NK+HNI P ++ ++I + I +++ Sbjct: 544 NSNGEVIMYGDKITDSMAYAIEETNRRRKIQDAYNKEHNITPTTIHKEIRDAIRGQEVID 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 DAA S+ + SKK + ++ L KQM AA L+FE A +RD I L+ Sbjct: 604 DAA----SLVKKGKKASKKDKQVMIQELEKQMKDAAKVLDFERAMELRDIIMELQG 655 >gi|257460140|ref|ZP_05625244.1| excinuclease ABC, B subunit [Campylobacter gracilis RM3268] gi|257442581|gb|EEV17720.1| excinuclease ABC, B subunit [Campylobacter gracilis RM3268] Length = 658 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/658 (50%), Positives = 448/658 (68%), Gaps = 9/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ + PS DQ AI ++ G S K Q LLGVTGSGKTFTMA +I+ + PA+VM Sbjct: 4 FKIESKFSPSEDQEKAIEGIVAGFQSGNKYQTLLGVTGSGKTFTMANIIKRLGIPALVMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+S +N++++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPQNHVEYFISYYDYYQPEAYIPRQDLFIEKDSDVNQELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D I V+SVS YG+G Y M++ +IG K LL LV YKR Sbjct: 124 SATASLLSFDDVITVASVSANYGLGDPAEYKGMVLFFEIGSKFSTKFLLRKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV GD I+I+P++ D A+R+ FG++IE + L +K ++V+ +Y Sbjct: 184 DDFFDRGNFRVNGDVIDIYPAYFNDEAFRIEFFGDEIEAMYHLDVLENKKTQSVKKFILY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S ++ L + +K I+EEL+ RL E G+L+EAQRL+ R+ +DLEML TG C+ Sbjct: 244 PTSQFIVGEQRLKSTIKGIEEELEQRLKFFEDAGKLVEAQRLKGRVEFDLEMLGATGMCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+RYLTG+ PGE P +LF+Y +D L+ VDESHV++PQ GM+ GD RK TL Sbjct: 304 GIENYARYLTGQKPGETPYSLFDYYESKGKDYLVIVDESHVSLPQFRGMFAGDRSRKETL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL F+E+ + + VSATP +EL+ +G + EQI+RPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKKAKFLFVSATPNDYELQLSRGAVYEQILRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + ++ + QVE ++D +G RIL+TVLTK+MAE+L++Y E ++V+YMHS++ Sbjct: 424 QIILKDSDNQVEILHDMAKEVIARGERILVTVLTKKMAEELSKYYLELGLKVKYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER E+IR LR G++D+L+GINLLREGLD+PE L+AI+DADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNELIRGLRSGEYDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ +V+++ IT S+Q AID T +RR+ Q E+N+ H I P S I E + Sbjct: 544 AARNVHGQVVMFCKKITASMQEAIDITQKRRKFQDEYNRAHGITPHSASRNIEESLK--- 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +ED T I L +A + K LRKQM AA L FE+AA +RDEI +L+ Sbjct: 601 IEDG--TEILRKGANLEKMPAAERAKIVKELRKQMLEAAAALEFEKAAALRDEIAKLR 656 >gi|160902951|ref|YP_001568532.1| excinuclease ABC subunit B [Petrotoga mobilis SJ95] gi|160360595|gb|ABX32209.1| excinuclease ABC, B subunit [Petrotoga mobilis SJ95] Length = 658 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/654 (50%), Positives = 452/654 (69%), Gaps = 5/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++++Y P GDQP AI +L GI+ + Q LLGVTGSGKT+TMA +I + RP +V++ Sbjct: 2 FKLRSEYEPQGDQPKAIEELSSGINKNYRFQTLLGVTGSGKTYTMANIIANVNRPTLVLS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNKILA QLY+EFK FFP N VE+F+SYYDYYQPEAY+P D YIEK + IN+ + +MR Sbjct: 62 PNKILAVQLYNEFKEFFPENRVEFFISYYDYYQPEAYIPSRDIYIEKNADINDILVKMRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S +S+L R D IVVSSVS IY G+ + +S + + L++ + ++E+L L K QY RQ Sbjct: 122 STLKSVLTRRDVIVVSSVSAIYASGNPDDFSNINLYLRVNEEYSRREILIKLGKMQYTRQ 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + GTFR GD +EIFP + ED RV+ F N++E+I I + I IY Sbjct: 182 EKDYLGGTFRWKGDVLEIFPPY-EDFGIRVTFFDNEVEKIEALDVFNRTIIEEFDKITIY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VT + + +A++ I +L+ ++ ++EG+LLEAQR+EQR+ DLE L+T G C+ Sbjct: 241 PAKEFVTSQEKIFSAIERINADLQTQIEYFKREGKLLEAQRIEQRVKQDLEFLQTLGYCK 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY GRNPG+ P TL +Y ED + F+DESH+ +PQ+ M+RGD+ RK L +Y Sbjct: 301 GIENYSRYFDGRNPGDSPWTLLDYFDEDFVTFIDESHIAVPQLRAMFRGDYARKKNLVDY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ I VSATPG +E+E IVEQIIRPTGLVDP VE Sbjct: 361 GFRLPSALDNRPLRFEEFLEKTNQIIFVSATPGPFEME-VSDQIVEQIIRPTGLVDPKVE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++S QV+D E+ ++G R L VLTK+ AE L+++L I+ Y+HSE+ T+E Sbjct: 420 VKSTEGQVDDFISEVKEVVERGERALAVVLTKKDAEILSDHLNLMGIKSLYLHSELDTIE 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+I+ +R G+ +V+VG+NLLREGLD+PE LVAI+DAD+EGFLRS+T+LIQTIGRAAR Sbjct: 480 RSEVIKKIRNGEIEVVVGVNLLREGLDLPEVSLVAIMDADREGFLRSETTLIQTIGRAAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV KV+LYAD IT++++ AIDET RRRE Q+++N +NI P+S+ +K+ E + ++ Sbjct: 540 NVQGKVLLYADRITEAMKTAIDETNRRREIQIQYNIDNNITPKSIIKKLPEDMFAPFKDN 599 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 I A + +LS +L L ++M+ AA L +EEAAR RDEIKR+K Sbjct: 600 EVKEEDYIFAVEENLSPDD---YLAMLEEKMYEAASELKYEEAARYRDEIKRIK 650 >gi|298372807|ref|ZP_06982797.1| excinuclease ABC subunit B [Bacteroidetes oral taxon 274 str. F0058] gi|298275711|gb|EFI17262.1| excinuclease ABC subunit B [Bacteroidetes oral taxon 274 str. F0058] Length = 711 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/669 (48%), Positives = 445/669 (66%), Gaps = 19/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AI +L + + Q LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 42 FNLVSAYQPSGDQPQAIRELTEAVDKGVDYQTLLGVTGSGKTFTMANVIANVNRPTLIIS 101 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R Sbjct: 102 HNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYLPATDTYIEKDLAINSEIEKLRL 161 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT LL RND ++VSSVSC+YGIG+ E + + + L +G ++ + + L SLV Y R Sbjct: 162 SATSQLLSGRNDIVIVSSVSCLYGIGNPEDFKKNTIPLAVGQNILRDDFLRSLVVANYSR 221 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I + RG FRV GD+++IFP++ D RV + NDI+ + P TGQ I ++ + Sbjct: 222 NEIDLNRGNFRVKGDTVDIFPAY-ADFILRVIFWDNDIDSLETLDPTTGQTIEVFDSFNL 280 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + + T + +N A+ I +L ++ ++ + EA+RL++R+TYD+EM+ G C Sbjct: 281 YPATIFTTTQERINHALDLIALDLGKQVEFFKENNKPYEAKRLQERVTYDIEMIREVGYC 340 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSRY R PG P +F+Y P+D L+FVDESHVTIPQI GM+ GD+ RK L E Sbjct: 341 SGVENYSRYFDNRPPGSRPFCIFDYFPKDFLVFVDESHVTIPQIHGMFGGDYSRKKNLVE 400 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL+FEEW L P I VSATP +EL + G +VEQ++RPTGL+DP + Sbjct: 401 YGFRLPASIDNRPLKFEEWEALVPRAIFVSATPAEYELNKSHGTVVEQVVRPTGLLDPEI 460 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++++ +EI + R L+ LTKRMAE+L YL + IR Y+HS+++TL Sbjct: 461 EVRPSEYQIDNLMNEIVDRIDKQERTLVVTLTKRMAEELNRYLCQAGIRSAYIHSDIETL 520 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G++DVLVG+NLLREGLD+P+ LVAILDADKEGFLR+ SL QT GRAA Sbjct: 521 DRVKIMDDLRRGEYDVLVGVNLLREGLDLPQVSLVAILDADKEGFLRNHRSLTQTAGRAA 580 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---------- 729 R+VN KVI YAD IT S++L IDET RRR KQ +N+KH+I P V + Sbjct: 581 RHVNGKVIFYADKITHSMRLTIDETNRRRAKQQAYNEKHHITPTQVVSQAQSSLWGKTNR 640 Query: 730 ----MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + P D N+SI + K A+ R++M AA ++ F EAA+ Sbjct: 641 ADYNADTATPPTATDGYEKNMSIIRAMEDRNIDKAIAY---ARRRMTEAARSMEFIEAAQ 697 Query: 786 IRDEIKRLK 794 RDE+ RL+ Sbjct: 698 WRDELLRLE 706 >gi|317180847|dbj|BAJ58633.1| excinuclease ABC subunit B [Helicobacter pylori F32] Length = 658 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 3 LFDLKSPYLPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TTG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKNNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRTLEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|315587002|gb|ADU41383.1| excision endonuclease subunit UvrB [Helicobacter pylori 35A] Length = 663 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L+K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 8 LFDLKSPYPPAGDQPQAIEALMKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 67 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 68 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 128 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKHAYKSFLLKLVEMGYSR 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 424 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 484 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 485 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 604 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D ++ ++ S++ + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 605 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 660 Query: 794 KS 795 ++ Sbjct: 661 RT 662 >gi|78188292|ref|YP_378630.1| excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3] gi|90110879|sp|Q3ATT8|UVRB_CHLCH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|78170491|gb|ABB27587.1| Excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3] Length = 681 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/667 (49%), Positives = 449/667 (67%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +Q+ + Y P+GDQP AI L++G+ Q LLGVTGSGKTFT++ VI + RP +VM+ Sbjct: 9 YQLVSPYQPAGDQPKAIEALVQGVRDGRHWQTLLGVTGSGKTFTISNVIAQLNRPVLVMS 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 69 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLRL 128 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL R D IVVSSVSCIYG+GS E + I++L+ G ++ E L L+ Y R Sbjct: 129 RATSALLSGRKDVIVVSSVSCIYGLGSPEEWKAQIIKLRAGMEKDRDEFLRELISLHYLR 188 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ G FRV GD+I++ P+H E++A R+ FG++IE + F TG+ + + E I Sbjct: 189 DDVQPTSGRFRVRGDTIDLVPAH-EELALRIEFFGSEIESLQTFDIQTGEILGDDEYAFI 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V L AM I+ EL RL L E R +EA+RLE+R YDLEM++ G C Sbjct: 248 YPARQFVADEEKLQVAMLAIENELAGRLNLLRSENRFVEARRLEERTRYDLEMMKELGYC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+++GR GE P L +Y PED ++ VDESHVT+PQI GMY GD RK L E Sbjct: 308 SGIENYSRHISGRPAGERPICLLDYFPEDYMVVVDESHVTLPQIRGMYGGDRSRKTVLVE 367 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ + P I +SATPG EL + G +VE ++RPTGL+DPPV Sbjct: 368 HGFRLPSALDNRPLRFEEYEEMVPQVICISATPGEHELMRSGGEVVELLVRPTGLLDPPV 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++++ EI G + L+ LTKRM+EDL ++ + IR RY+HSE+K+L Sbjct: 428 EVRPVKGQIDNLLAEIRHHISIGHKALVMTLTKRMSEDLHDFFRKAGIRCRYLHSEIKSL 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 488 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ V+LYAD IT+SIQ +DET RRR Q +N++H I P+S+ + + +++D + Sbjct: 548 RNLDGFVVLYADVITRSIQEVLDETARRRAIQQRYNEEHGITPRSIVKSVDQILDTTGVA 607 Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + +L+ +KG A ++ LR +M AA+++ +E+AA +R Sbjct: 608 DAEERYRRRRFGLEPKPERVLSGYADNLTPEKGYAIVEGLRLEMQEAAEHMEYEKAAYLR 667 Query: 788 DEIKRLK 794 DEI +++ Sbjct: 668 DEITKME 674 >gi|308184852|ref|YP_003928985.1| excinuclease ABC subunit B [Helicobacter pylori SJM180] gi|308060772|gb|ADO02668.1| excinuclease ABC subunit B [Helicobacter pylori SJM180] Length = 658 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRTYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I++++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKHLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|317014499|gb|ADU81935.1| excinuclease ABC subunit B [Helicobacter pylori Gambia94/24] Length = 658 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQNKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKENVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI +G R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA T+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|109947030|ref|YP_664258.1| excinuclease ABC subunit B [Helicobacter acinonychis str. Sheeba] gi|123362731|sp|Q17YL7|UVRB_HELAH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|109714251|emb|CAJ99259.1| excinuclease ABC subunit B [Helicobacter acinonychis str. Sheeba] Length = 658 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y +GDQP AI L K + ++ Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYSLAGDQPQAIDTLTKSLKNKNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKILEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + TT RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFETTTYRRAKQEEFNKLHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D T I+ ++ + K + + +K L K+M A NL+FEEA +RDEI +L Sbjct: 600 K--LRDD--ETKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMHLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|163784875|ref|ZP_02179647.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1] gi|159879856|gb|EDP73588.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1] Length = 595 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/584 (53%), Positives = 418/584 (71%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 T F+++ + P+GDQP AI QL + + K Q+LLG TG+GKT T K IE +PA+V Sbjct: 2 TPFKIKLPFKPAGDQPKAIKQLYQNLKDGVKEQVLLGATGTGKTITFGKTIEKYGKPALV 61 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 + NK LAAQ+Y E K FP NAVEYFVSYYDYYQPEAY+P D YIEK+SSIN+ IDR+ Sbjct: 62 LTHNKTLAAQIYRELKEIFPDNAVEYFVSYYDYYQPEAYLPEKDVYIEKDSSINDAIDRL 121 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 RHSAT+SL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G ++++ELL L++ QY+ Sbjct: 122 RHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMPIDRQELLRRLIELQYQ 181 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D RGTF V GD++E+ SH ED R+ FG++IE I+E R ++ Sbjct: 182 RDDYSFKRGTFSVKGDTVEVLASHTEDTILRIEFFGDEIEAITELDLFNRNVKRKLDRTV 241 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ SHYV P+P + A++ I+ +L+ + E K G+ +EA RL QR YD+EM+ G+ Sbjct: 242 IFPASHYVIPKPDIAEAVRQIQIDLEKEVEEFRKLGKEIEANRLWQRTNYDIEMILELGT 301 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSRY GR PGE P TL +Y P+D LL +DESHVTIPQI MY GD RK L Sbjct: 302 CKGIENYSRYFDGRKPGEAPYTLLDYFPDDYLLIIDESHVTIPQIRAMYNGDRKRKENLV 361 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YG+R+ S DNRPL+FEE+ I VSATP WE+E+ +GIIVEQIIRPTGL+DP Sbjct: 362 KYGWRMKSAFDNRPLKFEEFLQKIERAIYVSATPSDWEIERSKGIIVEQIIRPTGLLDPE 421 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V ++ Q++D+ EI ++ R ++ LTK+MAE+L++YL ER+I+ Y+HSE+ T Sbjct: 422 VVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLSDYLQERDIKAVYLHSEIDT 481 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER +II++LR G +DV+VG+NLLREG+D+PE LVAILDADK+GFLRS T+LIQ IGRA Sbjct: 482 IERAKIIKELREGIYDVVVGVNLLREGIDMPEVSLVAILDADKQGFLRSTTALIQIIGRA 541 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722 ARNVN + ILYAD IT +++ AI+ET RRR+ Q E+NKKH I P Sbjct: 542 ARNVNGRAILYADKITPAMEKAIEETNRRRKLQEEYNKKHGITP 585 >gi|325996380|gb|ADZ51785.1| Excinuclease ABC subunit B [Helicobacter pylori 2018] Length = 658 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/662 (49%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA VI +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI +G R L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERGLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|162447877|ref|YP_001621009.1| excinuclease ABC subunit B [Acholeplasma laidlawii PG-8A] gi|161985984|gb|ABX81633.1| excinuclease ABC subunit B [Acholeplasma laidlawii PG-8A] Length = 654 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/656 (50%), Positives = 448/656 (68%), Gaps = 7/656 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++++ Y PSGDQP AI +L+ S K Q+LLG TG+GKTFT+A +IE M + +V+ Sbjct: 4 LFKLKSPYKPSGDQPEAIDKLISNFESGTKEQILLGATGTGKTFTIANIIEKMGKKTLVL 63 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LA QLY E K+ FP N VEYF+SYYDY+QPEAYV +DTYIEK+SSIN++ID +R Sbjct: 64 AHNKTLAGQLYGELKSLFPENRVEYFISYYDYFQPEAYVVSSDTYIEKDSSINDEIDELR 123 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 HSA SLL R D IVV+SVSCIYGIG + Y + + L++G+ + LL+ L++ Y+R Sbjct: 124 HSAVASLLTREDVIVVASVSCIYGIGDPDDYKKATIFLRVGEEYGRNNLLNKLIELTYER 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI RG+FRV GD+IEI ++ RVS FG++I++I F PLTG + I Sbjct: 184 NDIDFKRGSFRVRGDAIEIILANEASQGIRVSFFGDEIDDIILFDPLTGVSKERTTFVTI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + ++ + + +++ IK EL ++ + +LLEAQR+E R YD+EMLE G Sbjct: 244 FPATLFMANKDKMKESIRRIKNELADQIHFFQGNNQLLEAQRIEMRTKYDIEMLEEIGFT 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR++ R GE P TL ++ +D L+ +DESHVTIPQ+ GMY GD RK L Sbjct: 304 SGIENYSRHIALREAGETPATLIDFFGDDYLMVIDESHVTIPQVRGMYFGDRSRKENLVN 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPL+F+E+ + I +SATPG +ELE+ IVEQIIRPT L+DP + Sbjct: 364 FGFRLPSALDNRPLQFDEFQARQDKVIYLSATPGPYELERNLP-IVEQIIRPTYLLDPEI 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 I+ Q++D+Y EI ++ R+L+T LT +M+EDLT + E ++V Y+HSEVK+L Sbjct: 423 TIKPTVGQIDDLYFEIKKRIEKNQRVLVTTLTIKMSEDLTRHFKELGLKVAYLHSEVKSL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER I+R LRLGK+DVL+GINLLREGLD+PE GLVAILDADK+GFLRS+ SLIQTIGRAA Sbjct: 483 ERTTILRALRLGKYDVLIGINLLREGLDLPEVGLVAILDADKQGFLRSERSLIQTIGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ VI+YADTI++S+Q AIDET RRR Q ++N+ H++ P V + ++ D I ++ Sbjct: 543 RNIDGTVIMYADTISESMQKAIDETNRRRSIQTKYNETHHVTPTQV---VKDIRDDISIK 599 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T D L L KK+ + LK L M AA +L+FE+A IRD I LK+ Sbjct: 600 GVITDK---DLDNLKLDKKQKEKELKRLDTLMRQAAKDLDFEKAMEIRDLIFELKA 652 >gi|219852418|ref|YP_002466850.1| excinuclease ABC subunit B [Methanosphaerula palustris E1-9c] gi|219546677|gb|ACL17127.1| excinuclease ABC, B subunit [Methanosphaerula palustris E1-9c] Length = 654 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/655 (52%), Positives = 454/655 (69%), Gaps = 19/655 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P G QP AI QL++G+ Q LLGVTGSGKTFT+A VI A+QRP +V+A Sbjct: 11 FKLVSPFEPKGSQPEAIEQLVQGLSDGPARQTLLGVTGSGKTFTIANVIAAVQRPTLVIA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK+FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK+S IN +I++MR Sbjct: 71 HNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDSQINPKIEQMRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T SL+ R D IVV+SVSCIYG+G+ E++ M +LK+ D V+++ LL LV+ Q++R Sbjct: 131 ATTASLMSRRDVIVVASVSCIYGLGNPENFQSMGFELKVHDRVQRRALLLRLVEIQFERN 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++ G FRV GD+I+I P + ++ R+ +FG++IE I E TG+K +++ +Y Sbjct: 191 DLELMPGRFRVKGDTIDIIPGYFNNI-IRIELFGDEIERIMEIDRNTGEKRESMDYFFVY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V P T AM I+EEL+ RL EL +E+ RL QR YDLEM+E TGSC+ Sbjct: 250 PARHFVIPEETRKRAMASIREELEERLPELGL----IESHRLAQRTQYDLEMMEETGSCK 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R GE P L +Y P+D L+ +DESH TIPQ+ GMY+GD+ RK +L +Y Sbjct: 306 GIENYSRHFDFRKAGEKPYCLLDYFPDDFLMVIDESHQTIPQVHGMYKGDYSRKKSLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATP +E E + VEQIIRPTGL+DPPV Sbjct: 366 GFRLPSAFDNRPLKFEEFERYMKDVIYVSATPSRYERETSIQV-VEQIIRPTGLIDPPVT 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q DV E+ +G R L+T LTKR+AE+LTEYL +R IR RY+HSE+ T+E Sbjct: 425 IRPTDGQTVDVIREVKKVIARGDRALITTLTKRLAEELTEYLADRGIRTRYLHSEIDTIE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR LRLG+FDVLVGINLLREGLDIPE G + ILDADKEGFLR SLIQ IGRAAR Sbjct: 485 RTEIIRQLRLGEFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARSLIQIIGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N++S V+LYADT+T SI+ A+ ET RRR Q+ +N++H+I P+++++ I E I L+D Sbjct: 545 NMHSYVVLYADTMTDSIKTALSETERRRTLQIAYNEEHHIVPETIRKPIRE--KEIDLKD 602 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L +K+ L +L +M AA+ L+FE A +R+ IK+L + Sbjct: 603 VK-----------HLPRKEIPNLLIALDAEMKQAAEVLDFERAIALRERIKQLNA 646 >gi|308183218|ref|YP_003927345.1| excinuclease ABC subunit B [Helicobacter pylori PeCan4] gi|308065403|gb|ADO07295.1| excinuclease ABC subunit B [Helicobacter pylori PeCan4] Length = 658 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNIAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|317182367|dbj|BAJ60151.1| excinuclease ABC subunit B [Helicobacter pylori F57] Length = 658 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 3 LFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP + + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPVYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V +++E Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVT-RVLE-- 596 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + + L D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 597 EELKLRD-DEIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|1737482|gb|AAC46270.1| UvrB [Helicobacter pylori] Length = 658 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +D RPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDTRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI +G R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FDVL+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMREHAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|317009722|gb|ADU80302.1| excinuclease ABC subunit B [Helicobacter pylori India7] Length = 658 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRAIGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA T+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRTLEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|217033092|ref|ZP_03438557.1| hypothetical protein HPB128_23g10 [Helicobacter pylori B128] gi|298735886|ref|YP_003728411.1| excinuclease ABC subunit B [Helicobacter pylori B8] gi|216945193|gb|EEC23882.1| hypothetical protein HPB128_23g10 [Helicobacter pylori B128] gi|298355075|emb|CBI65947.1| excinuclease ABC subunit B [Helicobacter pylori B8] Length = 658 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|308062389|gb|ADO04277.1| excinuclease ABC subunit B [Helicobacter pylori Cuz20] Length = 658 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 3 LFDLKSSYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D ++ ++ S++ + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|297380290|gb|ADI35177.1| excinuclease ABC, B subunit [Helicobacter pylori v225d] Length = 663 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 8 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 67 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 68 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 128 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 424 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 484 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 485 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 604 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D ++ ++ S++ + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 605 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 660 Query: 794 KS 795 ++ Sbjct: 661 RT 662 >gi|145219261|ref|YP_001129970.1| excinuclease ABC subunit B [Prosthecochloris vibrioformis DSM 265] gi|145205425|gb|ABP36468.1| Excinuclease ABC subunit B [Chlorobium phaeovibrioides DSM 265] Length = 689 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/669 (48%), Positives = 448/669 (66%), Gaps = 14/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQPAAIA L +G+ S Q LLGVTGSGKT+TM+ VI +P +VM+ Sbjct: 13 FRLVSPYAPAGDQPAAIAALTEGLKSGSDYQTLLGVTGSGKTYTMSNVIANAGKPVLVMS 72 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 73 HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPTIDKYIAKDLRINDEIERLRL 132 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL R D IVVSSVSCIYG+GS E + I++L+ G E+ E L L+ + R Sbjct: 133 KATSALLSGRKDVIVVSSVSCIYGLGSPEDWKSQIIELRTGMEKERDEFLQELIALHFVR 192 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ G FRV GD I++ P++ + +A RV FG++IE + F +G+ + + I Sbjct: 193 DDVNPGPGKFRVRGDCIDLVPAY-DQIALRVEFFGSEIESLQSFDMESGEILGSDAYAFI 251 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V L TAM I++EL RL EL + R +EA RLE+R YDLEM++ G C Sbjct: 252 YPARQFVAEEEKLKTAMLAIEDELAGRLNELRADNRFVEAGRLEERTRYDLEMMKELGYC 311 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+++ R PGE P L +Y PED L+ VDESHVT+PQI GMY GD RK L E Sbjct: 312 SGIENYSRHISQRGPGERPYCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTILVE 371 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRF+E+ + P + +SATPG EL + G++VEQ++RPTGL+DPPV Sbjct: 372 HGFRLPSALDNRPLRFDEFEEMAPQVVCISATPGDHELLRSGGVVVEQVVRPTGLLDPPV 431 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++++ EI G + L+ LTKRM+EDL ++ + IR RY+HSE+K+L Sbjct: 432 EVRPVKGQIDNLLAEIRRHVAGGHKALVMTLTKRMSEDLHDFFRKSGIRSRYLHSEIKSL 491 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G+ DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 492 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 551 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN V+LYADTIT+SI+ +DET RRR Q +N +H I P+S+ + + +++D + Sbjct: 552 RNAEGFVVLYADTITRSIREVLDETARRRTIQQAYNDEHGIVPRSIVKSVNQILDTTGVA 611 Query: 740 DAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + ++L SL+ +G A + LR +M AA + +E+AA +R Sbjct: 612 DAEERYRRRRFGLVPKPERLLAGALESLTADEGLAMVAELRVEMQEAAVKMEYEKAAYLR 671 Query: 788 DEIKRLKSS 796 DEI +L+ Sbjct: 672 DEITKLEQG 680 >gi|261839846|gb|ACX99611.1| excinuclease ABC subunit B [Helicobacter pylori 52] Length = 658 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKCLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|167753248|ref|ZP_02425375.1| hypothetical protein ALIPUT_01520 [Alistipes putredinis DSM 17216] gi|167659179|gb|EDS03309.1| hypothetical protein ALIPUT_01520 [Alistipes putredinis DSM 17216] Length = 680 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/678 (48%), Positives = 457/678 (67%), Gaps = 22/678 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIAQLL I K LLGVTGSGKTFT+A VI + RP +V++ Sbjct: 3 FKLVSDYAPTGDQPEAIAQLLASIRHGSKHNTLLGVTGSGKTFTVANVISQLNRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ SIN++I++MR Sbjct: 63 HNKTLAAQLYGEFKNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINDEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T +LL R D IVVSSVSC+YG G+ + M + +++G+ + K+ L LV+ Y R Sbjct: 123 STTATLLSGRRDVIVVSSVSCLYGCGNPSDFHSMAIHIEVGEILNYKQFLYKLVEALYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + + TFRV GD+I+I + E + +RV+ F N++E I P+TGQ+I+ ++ + Sbjct: 183 TERELTPATFRVTGDTIDIMAAFGEFGNQCFRVTFFDNEVESIQSIDPVTGQRIQTLDAL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y S +VT + ++TA++ I +L ++ E+ GR EAQR++QR+ YDLEM++ G Sbjct: 243 TLYPVSLFVTTKERIHTAVQQIYLDLGKQIAFFEQAGRPAEAQRIKQRVEYDLEMIKELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G P L +Y P+D L+ +DESHVT+PQ+ M+ GD RK L Sbjct: 303 YCPGIENYSRYFDGRAEGTRPFCLLDYFPQDYLMVIDESHVTLPQVHAMFGGDRARKENL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ DNRPLRFEE+ L TTI VSATP +EL + +G+IVEQ+IRPTGLVDP Sbjct: 363 VEYGFRLPAAKDNRPLRFEEFEQLVGTTIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+E+R Q++D+ +EI+ + +IL+T +TKRMAE+L++Y +R RY+HS++ Sbjct: 423 PLEVRITDNQIDDLLEEIDKRVRNDDKILVTTITKRMAEELSKYFDRVGVRNRYIHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER++I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLR+ S+ Q GR Sbjct: 483 TLERVQILEDLRAGMFDVLIGVNLLREGLDLPEVALVAILDADKEGFLRNVRSITQIAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--------- 728 AAR+ N VILYAD T S++ AI+++ RRREKQ+ +N +H + P+ ++ Sbjct: 543 AARHSNGNVILYADHCTDSMRYAIEQSNRRREKQMRYNMEHEMLPRQAQKSGSGQSTLLA 602 Query: 729 ---IMEVIDPIL--LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 V D IL L D T ++ D + S + + R++M AA +L+F A Sbjct: 603 NTVQTPVTDGILYPLPDNRQT-LAADVTS-AYSTESIDTQIARAREEMERAAKSLDFLAA 660 Query: 784 ARIRD---EIKRLKSSPY 798 + RD E+++LK S Y Sbjct: 661 TKFRDRMYELQKLKESEY 678 >gi|154249185|ref|YP_001410010.1| excinuclease ABC subunit B [Fervidobacterium nodosum Rt17-B1] gi|229557962|sp|A7HKC0|UVRB_FERNB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|154153121|gb|ABS60353.1| excinuclease ABC, B subunit [Fervidobacterium nodosum Rt17-B1] Length = 661 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/659 (50%), Positives = 458/659 (69%), Gaps = 11/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ +DY P GDQP AI L+ G++ + Q LLGVTGSGKTFTMA VI+ + RP ++++ Sbjct: 3 YELISDYEPMGDQPQAIESLVNGLNKGYRFQTLLGVTGSGKTFTMANVIKEVNRPVLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEFK FFP+N VE+F+SYYDYYQPEAYVP D YIEK + IN+ I RMR Sbjct: 63 PNKTLAAQLYSEFKAFFPNNKVEFFISYYDYYQPEAYVPTKDLYIEKSADINDVIARMRM 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR- 319 SA +S++ R D IVV+SVS IY G + + ++L++G + E + LVK Y+R Sbjct: 123 SAIKSIMTRRDVIVVASVSAIYACGDPRDFDTLNIKLEVGQRINLSEFVKKLVKIGYERK 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +DIG+ G+FR+ GD++EIFPS+ +D R+ +FG++I+ + F + I ++ + I Sbjct: 183 EDIGLT-GSFRLRGDTLEIFPSY-QDEGIRIELFGDEIDRMYTFDRMNRDVIERLDRLTI 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y YVT + A+K I+ EL ++ +L EG+ LEAQRL QR D+E+L T G C Sbjct: 241 YPTKEYVTTEEKIERAVKSIRAELDEQVKKLRSEGKELEAQRLWQRTMNDIELLSTLGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+ GR PGEPP +L +Y ED ++F+DESH+TIPQ+ MY G+ RK +L E Sbjct: 301 TGIENYSRHFDGRQPGEPPYSLLDYYDEDFIVFIDESHITIPQLRAMYHGEMSRKKSLVE 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP DNRPL+F+E+ I VSATPG +ELE + + VEQIIRPTGL+DP V Sbjct: 361 YGFRLPCAYDNRPLKFDEFMQKVNQVIFVSATPGPYELEVSEQV-VEQIIRPTGLIDPQV 419 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R R QV+D+ +EI ++G + L+TVLTK+ AE L EYL E NIR Y+HSE+ + Sbjct: 420 EVRPTRYQVDDLVNEIVQVKKRGEKALVTVLTKKTAEMLAEYLVEFNIRALYLHSELDAI 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+E+++ LR G+ DV+VG+NLLREGLD+PE LVAILDAD EGFLRS+T+LIQ IGR A Sbjct: 480 KRVEVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRTA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME-VIDPILL 738 RN N KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I P+++ + +ME + P Sbjct: 540 RNENGKVIMYADRITPAMQRAIDETNRRRKIQMEYNEKHGIKPKTIIKPLMEDIFAPFRD 599 Query: 739 EDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ + SI + SLS ++ A L+ +M+ AA L +E+AAR+RDE+ ++K Sbjct: 600 KEEEMYKVYEDSILQMKESLSLEEYAALLEE---EMYKAASELRYEDAARLRDELFKIK 655 >gi|76801024|ref|YP_326032.1| excinuclease ABC subunit B [Natronomonas pharaonis DSM 2160] gi|90111041|sp|Q3ITS0|UVRB_NATPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|76556889|emb|CAI48463.1| excinuclease ABC chain B [Natronomonas pharaonis DSM 2160] Length = 683 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/658 (50%), Positives = 451/658 (68%), Gaps = 10/658 (1%) Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206 + P+GDQP AI L+ G S + Q LLGVTGSGKT T++ V+E +Q+P +V+A NK LA Sbjct: 24 FEPAGDQPDAIETLVAGFESGAEKQTLLGVTGSGKTNTVSWVLEELQQPTLVLAHNKTLA 83 Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266 AQLY EF+ FP NAVEYFVSYYDYYQPEAYV +TDTYI+K+ SINE+I+R+RHSATRSL Sbjct: 84 AQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDMSINEEIERLRHSATRSL 143 Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 L R+D IVV+SVS IYG+G +Y +M ++L+ GD +++LLS+LV+ Y+R D+ + Sbjct: 144 LTRDDVIVVASVSAIYGLGDPANYEEMALRLEAGDERSREDLLSALVELNYERNDVDFQQ 203 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 GTFRV GD++EI+P + A RV +G++I+ + + + G+ + I+ HY Sbjct: 204 GTFRVRGDTVEIYPMYGRH-AVRVEFWGDEIDRLLKVDIVDGEVVSEEPATLIHPAEHYS 262 Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446 P L TA++ I+ L+ R+ E++G L+ AQR+E+R T+D+EML+ TG C IENYS Sbjct: 263 VPDRRLETAIEEIEGLLEDRIDYFERQGDLVAAQRIEERTTFDIEMLQETGHCSGIENYS 322 Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506 +++ R GEPP TL +Y P+ L +DESH TIPQI G + GD RK +L E GFRLP+ Sbjct: 323 VHMSDRETGEPPYTLLDYFPDGFLTVIDESHQTIPQIKGQFEGDRSRKESLVENGFRLPT 382 Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566 DNRPL+FEE+ T+ VSATPG +E + + +VEQI+RPT LVDP +E+ A Sbjct: 383 AYDNRPLKFEEFEAKTDRTLYVSATPGDYERDHSEQ-VVEQIVRPTYLVDPDIEVEPAEK 441 Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 QVED+ + I A + R+L+T LTKRMAEDLTEYL + V YMH E TLER E++R Sbjct: 442 QVEDLIERIQ-ATPEDERVLVTTLTKRMAEDLTEYLENAGVDVAYMHDETDTLERHELVR 500 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LRLG+ VLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRAARNV V Sbjct: 501 SLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAARNVEGSV 560 Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746 +LYAD T S+ AI+ET RRRE Q E N +H P+++++ + E P ++T+ Sbjct: 561 VLYADETTDSMAAAIEETRRRREIQREFNAEHGHEPRTIEKPVSETNLP-----GSSTDT 615 Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804 A + + + ++ L +M AADNL FE AA IRD I+ L+ + F GL+D Sbjct: 616 DGVADVAPDTVDEAEQLIERLETRMQEAADNLEFELAADIRDRIRELRET--FDGLED 671 >gi|189345954|ref|YP_001942483.1| excinuclease ABC subunit B [Chlorobium limicola DSM 245] gi|238692185|sp|B3EFX1|UVRB_CHLL2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189340101|gb|ACD89504.1| excinuclease ABC, B subunit [Chlorobium limicola DSM 245] Length = 684 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/667 (49%), Positives = 452/667 (67%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P GDQP AI QL++G+ ++ Q LLGVTGSGKTFT++ +I + +P +VM+ Sbjct: 9 YRLVSSYSPKGDQPKAIEQLVEGVQRGDRWQTLLGVTGSGKTFTISNLIAQVGKPVLVMS 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSCIYG+GS E + I++L+ G ++ + L LV Y R Sbjct: 129 KATSSLLSGRRDVIVVSSVSCIYGLGSPEEWKAQIIELRPGMEKDRDQFLQELVSLHYVR 188 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ G FRV GD I++ P+H E++A RV FG +IE + F +G+ + + I Sbjct: 189 DDMKPGPGKFRVRGDIIDLVPAH-EELAVRVEFFGPEIESLQTFDMQSGEVLGRDDYAFI 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V + AM I+ EL RL EL E RL+EA+RLE+R YDLEM++ G C Sbjct: 248 YPARQFVAGEEQMRHAMLAIENELAGRLNELRGENRLIEARRLEERTRYDLEMMKELGYC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L GR PG+ P L +Y PED L+ VDESHVT+PQI GMY GD RK L E Sbjct: 308 SGIENYSRHLAGREPGDRPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTILVE 367 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRF+E+ L P + VSATPG ELE G+IVEQ++RPTGL+DPPV Sbjct: 368 HGFRLPSALDNRPLRFDEYVGLVPQVVCVSATPGDLELEYSGGVIVEQLVRPTGLLDPPV 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ EI +G + L+ LTKRM+EDL +Y + IR RY+HSE+K+L Sbjct: 428 EVRPVKGQIDDLLGEIRKHTARGFKALIMTLTKRMSEDLDDYFRKTGIRSRYLHSEIKSL 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G+ DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 488 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN V+LYAD +T+SI+ +DET+RRR+ Q +N++H I PQS+ + + +V++ + Sbjct: 548 RNSEGFVVLYADVLTRSIREVLDETSRRRKIQQAYNEEHGIVPQSIIKSVEQVLNTTGVA 607 Query: 740 DAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + ++L +L+ ++ + +SLR +M AA + +E+AA +R Sbjct: 608 DAEERYRRKRFGLEPKPERLLSTLIDTLTAEECYSMAESLRLEMQEAALKMEYEKAAYLR 667 Query: 788 DEIKRLK 794 DEI + + Sbjct: 668 DEITKFE 674 >gi|189500951|ref|YP_001960421.1| excinuclease ABC subunit B [Chlorobium phaeobacteroides BS1] gi|226695480|sp|B3EMK1|UVRB_CHLPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|189496392|gb|ACE04940.1| excinuclease ABC, B subunit [Chlorobium phaeobacteroides BS1] Length = 690 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/669 (48%), Positives = 441/669 (65%), Gaps = 14/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P GDQP AI L +G+ + Q+LLGVTGSGKTFTMA VI + +P ++++ Sbjct: 9 FRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVLLIS 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 69 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIERLRL 128 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSCIYG+G+ E + I++L++ E+ L L+ + R Sbjct: 129 KATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLHFVR 188 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D + G FRV GD I++ P H E+ A RV FG++IE + F TG+ + E I Sbjct: 189 DDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEYAFI 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V R L AM I++EL RL + +EA+R+E+R YDLEM++ G C Sbjct: 248 YPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKELGYC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L+GR GE P L +Y PED L+ VDESHVT PQI GMY GD RK L E Sbjct: 308 SGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTILVE 367 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +DNRPLRFEE+ + P I VSATPG +EL + G +VEQ++RPTGL+DP + Sbjct: 368 YGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLDPEI 427 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R Q++D+ +EI +G + L+ LTKRM+EDL +YL + +R RY+HSE+K+L Sbjct: 428 VVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEIKSL 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G+ D+LVG+NLLREGLD+PE LVAILDADKEGFLR SL+Q GRAA Sbjct: 488 ERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV V+ YAD IT S++ IDET RRR Q + N+ H + P S+ + + +V+D + Sbjct: 548 RNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTTGVA 607 Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + I+ SL ++ A + LR +M AA+++ FE+AA +R Sbjct: 608 DAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAAYLR 667 Query: 788 DEIKRLKSS 796 DE+ +L+ + Sbjct: 668 DEVTKLEDA 676 >gi|317177865|dbj|BAJ55654.1| excinuclease ABC subunit B [Helicobacter pylori F16] Length = 658 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKINKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAVTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|257053424|ref|YP_003131257.1| excinuclease ABC subunit B [Halorhabdus utahensis DSM 12940] gi|256692187|gb|ACV12524.1| excinuclease ABC, B subunit [Halorhabdus utahensis DSM 12940] Length = 685 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/663 (51%), Positives = 449/663 (67%), Gaps = 8/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIAQL +G S Q LLGVTGSGKT T++ V+E +Q+P +V+A Sbjct: 19 FRVDAPFDPAGDQPNAIAQLAEGYRSGMDEQTLLGVTGSGKTNTVSWVLEEIQQPTLVIA 78 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FP NAVEYFVSYYDYYQPEAYV +TD YIEK++SIN++IDR+RH Sbjct: 79 HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDKYIEKDASINDEIDRLRH 138 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G +Y M ++L++G +++ ELL LV Y+R Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPANYVDMSLRLEVGQEIDRDELLGRLVDLNYERN 198 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++EI+P + A RV ++G +I+ IS+ PL G+ I+ Sbjct: 199 DVDFTQGTFRVRGDTVEIYPMYGR-YALRVELWGEEIDRISKLDPLEGELQSEEPAALIH 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P + A++ I+E ++ R+ E++G L+ AQR+E+R T+DLEMLE TG C Sbjct: 258 PAEHYSIPEQEIENAIEEIEELMERRVDYFERQGDLVAAQRIEERTTFDLEMLEETGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+ R GE P TL +Y P+D L VDESH TIPQI G Y GD RK +L E Sbjct: 318 GIENYSVHLSDRESGEAPYTLLDYFPDDFLTVVDESHQTIPQIKGQYEGDKSRKDSLVEN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T+ VSATP +E EQ +VEQI+RPT LVDP +E Sbjct: 378 GFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPSDYEREQSDQ-VVEQIVRPTYLVDPEIE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 + A +QV+D+ D ++ A R L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 437 VSPAESQVDDLMDRLD-ALPDDERALVTTLTKRMAEDLTEYLEEAGVAVEYMHDETDTLE 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E++R LR G+FDVLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRAAR Sbjct: 496 RHELVRGLRAGEFDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN KV+LYAD + +++ AI ET RRR Q E+N+++ P ++++ I E P Sbjct: 556 NVNGKVVLYADEPSDAMESAIAETKRRRRIQREYNEEYGHEPTTIEKAIGETNLP----- 610 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 + T A ++ ++ L ++M AADNL FE AA IRD I+ L+ Sbjct: 611 GSKTETGGSATADPEDEEAAARLIEELEERMGEAADNLEFELAADIRDRIRELREEYDLD 670 Query: 801 GLD 803 G D Sbjct: 671 GPD 673 >gi|307299265|ref|ZP_07579066.1| excinuclease ABC, B subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915061|gb|EFN45447.1| excinuclease ABC, B subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 668 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/669 (49%), Positives = 448/669 (66%), Gaps = 18/669 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F+M + Y P GDQP AI +L+ G+ S ++ Q LLGVTGSGKTFTMA VI +QRPAIV+ Sbjct: 2 LFEMDSSYSPQGDQPQAIEKLIDGLKSGDRFQTLLGVTGSGKTFTMANVISTLQRPAIVI 61 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 +PNK L AQLY EFK FFP N VE F+SYYDYY PE+Y+P D +IEKE+ INE ++RMR Sbjct: 62 SPNKTLVAQLYREFKTFFPKNKVELFISYYDYYMPESYIPSKDLFIEKEAEINETLERMR 121 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +S+L RND +V++SVS IY G + ++ M + L+ G S+ +KEL L QY R Sbjct: 122 ISALKSVLTRNDTVVLASVSAIYASGDPKDFATMNIFLERGKSINRKELALKLANIQYNR 181 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + G F V G+ EIFP + ED R+ F ++IE I F P+ + I ++ + + Sbjct: 182 SEDVSAGGVFHVKGEIFEIFPPY-EDFGIRLYFFDDEIERIVSFDPINRKTIEELDMVTV 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +VT + + AM+ I+ EL+ R+ +LE+EG+ LEAQRL QR TYD+EML + G C Sbjct: 241 YPAKEFVTTQDKILGAMRNIENELEERVKQLEREGKYLEAQRLRQRTTYDMEMLSSVGYC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-FVDESHVTIPQISGMYRGDFHRKATLA 498 IENYSR+ GR PGE P TL +Y + + F+DESH+ +PQ+ MYRGD+ RK L Sbjct: 301 SGIENYSRFFDGRMPGEKPYTLLDYFDREKFITFIDESHIGVPQLGAMYRGDYSRKKNLV 360 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLP+ DNRPL+FEE+ + VSATPG++E E II +Q+IRPTGLVDP Sbjct: 361 DYGFRLPAAFDNRPLKFEEFLSTVGQIVFVSATPGNFEAEHSTRII-DQVIRPTGLVDPE 419 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V + +QV+D + + ++ R L+TVLTK+ AE L++YL E IR Y+HSE+ Sbjct: 420 VIVHPTESQVDDFIERMREVKKRNERALVTVLTKKAAEMLSDYLNEVGIRSEYLHSELDA 479 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 +ER+E++R LR G +V+VG+NLLREGLD+PE LVAI+DADKEGFLRS+T+LIQTIGRA Sbjct: 480 IERVEVLRKLRDGTVEVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTLIQTIGRA 539 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNVN +VILYADT+T S++ AIDET RRR KQL +NK+HNI P+S+ + + I Sbjct: 540 ARNVNGQVILYADTMTGSMKRAIDETNRRRLKQLIYNKEHNITPESIVKPLYRNI----F 595 Query: 739 EDAATTNISIDAQ-QLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIR 787 E+ A N+ + + + + +G LK L ++M AA L FE+AA +R Sbjct: 596 EEFAGENLDKEREDKARATYLEGVMALKESLDYEDYIALLNEEMIRAAGELRFEDAAILR 655 Query: 788 DEIKRLKSS 796 DE+ LK S Sbjct: 656 DEMYSLKKS 664 >gi|206895378|ref|YP_002247043.1| excinuclease ABC, B subunit [Coprothermobacter proteolyticus DSM 5265] gi|206737995|gb|ACI17073.1| excinuclease ABC, B subunit [Coprothermobacter proteolyticus DSM 5265] Length = 651 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/655 (49%), Positives = 448/655 (68%), Gaps = 14/655 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + PSGDQP AI +L GI+ K Q LLGVTGSGKTFTMAK+IEA+ P +V++ Sbjct: 5 FKVEAPFEPSGDQPEAIEKLCDGINKGFKFQTLLGVTGSGKTFTMAKIIEALNLPTLVIS 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LA QLYSEF+ FFPHNAVE F+SYYDYY+PEAY+P TDTY+ K+++INE ID+MR Sbjct: 65 PNKTLAVQLYSEFREFFPHNAVELFMSYYDYYRPEAYIPETDTYLPKDAAINEDIDKMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA SLL R D +VV+SVSCIY + + E ++ + G + K + L + Y+R Sbjct: 125 SAISSLLSRRDVVVVASVSCIYSLENPEVFAGSAFSITEGMKMNTKFFMRRLSQISYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND-IEEISEFYPLTGQKIRNVETIKI 379 DI + G FR G +++FP H + + V F +D IE I E PLTG+++ + + Sbjct: 185 DIELRPGNFRSRGFKVDVFPPHAQGIISVV--FDDDVIESIYESDPLTGERMFSYHSYTF 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + ++VT + + + EL ++ + ++EG+ +EAQR+E+R YD+EML +TG C Sbjct: 243 FPSKYFVTSEQLIRNVVDQVMVELDKQVRQFKEEGKYIEAQRIEERTKYDMEMLLSTGYC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY +GR G+ P TL +Y L+F+DESH+TIPQI M+ G+ RK TL Sbjct: 303 SGIENYSRYFSGRREGQRPYTLLDYFRRPYLMFIDESHLTIPQIRAMFHGEMQRKETLVR 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS DNRPL F+E+ L I VSATPG +ELE + + VEQI+RPTGLVDP V Sbjct: 363 FGFRLPSAKDNRPLNFDEFLSLVDKVIFVSATPGPYELEVSKQV-VEQIVRPTGLVDPEV 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++ A+ QV+D+ E+ Q G R L+ LTK+MAE L+ YL +VRY+HSE+ + Sbjct: 422 VVKPAKNQVDDLVRELTRVVQHGERALVLTLTKQMAEKLSTYLSSLKFKVRYLHSEIDVI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +++++LR G D++VGINLLREGLD+PE LVA+LDADKEGFLRS+ SLIQ IGRA+ Sbjct: 482 ERSQVLKELRTGVIDIIVGINLLREGLDLPEVSLVAVLDADKEGFLRSERSLIQMIGRAS 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN +VILYAD +T S++ A+DET RRREKQL +NK+H I PQ+V++++++ +D Sbjct: 542 RNVNGRVILYADQLTDSLRSAVDETNRRREKQLAYNKEHGITPQTVRKRVVDYLD----- 596 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 IS A ++K++ A L L ++M+ AA+ L FE+A IRD+IK LK Sbjct: 597 -----FISGAASGSRMTKEEANAMLLQLEQEMYEAAEALEFEKAIVIRDKIKELK 646 >gi|317178583|dbj|BAJ56371.1| excinuclease ABC subunit B [Helicobacter pylori F30] Length = 658 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 3 LFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKINKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKENVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 R--LRDD--EIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|254779666|ref|YP_003057772.1| excinuclease ABC subunit B [Helicobacter pylori B38] gi|254001578|emb|CAX29614.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B) [Helicobacter pylori B38] Length = 658 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/662 (48%), Positives = 455/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP I L K + + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQTIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++VRYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|313203369|ref|YP_004042026.1| excinuclease ABC subunit b [Paludibacter propionicigenes WB4] gi|312442685|gb|ADQ79041.1| Excinuclease ABC subunit B [Paludibacter propionicigenes WB4] Length = 666 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/659 (48%), Positives = 457/659 (69%), Gaps = 6/659 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI QL++G+++ Q LLGVTGSGKTF++A V+E +QRP +V++ Sbjct: 3 FKLIFPFRPTGDQPEAIRQLVEGLNADIPFQTLLGVTGSGKTFSIANVVEQIQRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+P +DTYIEK+ +IN++I+++R Sbjct: 63 HNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYLPVSDTYIEKDLAINQEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + T +LL R D +VVSSVSCIYG+G+ + ++ ++ + G V + + L +LV Y R Sbjct: 123 ATTSALLSGRRDVLVVSSVSCIYGMGNPDDFNSNVIDIHRGQKVVRNDFLRTLVDSLYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I + RG FRV GD+++IF ++ D RV +G++IE+I PLT + ++ KI Sbjct: 183 NEIELNRGNFRVKGDTVDIFLAY-ADFVLRVVFWGDEIEDIQTVDPLTFNVQESFDSYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y S +VT + L A++ I+ ++ ++ G+ EA+R+ +R+ YD+EM++ G C Sbjct: 242 YPASIFVTTKERLAAAIQLIEIDMAKQVDYFRSIGKHYEAKRIYERVNYDIEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L +Y P+D L+ +DESHV+I QI M+ GD RK L + Sbjct: 302 SGIENYSRYFDGREAGSRPFCLLDYFPKDFLMVIDESHVSISQIRAMFGGDSARKQNLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRPL+FEE+ L P TI VSATP +ELE+ QGI+++Q+IRPTGL+DP + Sbjct: 362 YGFRLPSAKDNRPLKFEEFEELAPQTIYVSATPADYELEKSQGIVIDQLIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI + ++ R L+T LTKRMAE+LT+YL + ++ Y+HS+V TL Sbjct: 422 DVRPSLNQIDDLLEEITVRTEKNERTLVTTLTKRMAEELTDYLGKMGVQCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVQIMEDLRRGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736 RN+N +VI+YAD IT S+Q I ET RRREKQL +N+ H I P ++ + +P+ Sbjct: 542 RNLNGRVIMYADKITDSMQKTISETNRRREKQLAYNEAHGITPTAIVKGERNSFSKAEPL 601 Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +E + +I+ D +SK + + +K M AA L F EAA++RDE+ +L+ Sbjct: 602 AYIEPENSKSIAADPVVQYMSKSALEKAIAKTKKSMQEAAKKLEFLEAAQLRDELIKLE 660 >gi|261838445|gb|ACX98211.1| excinuclease ABC subunit B [Helicobacter pylori 51] Length = 658 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/662 (48%), Positives = 455/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++ +R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLECLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|217034664|ref|ZP_03440069.1| hypothetical protein HP9810_901g11 [Helicobacter pylori 98-10] gi|216942872|gb|EEC22363.1| hypothetical protein HP9810_901g11 [Helicobacter pylori 98-10] Length = 658 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 3 LFDLKSPYLPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQINKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D I+ ++ + K + + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 600 K--LRDD--EIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|281356806|ref|ZP_06243297.1| excinuclease ABC, B subunit [Victivallis vadensis ATCC BAA-548] gi|281316933|gb|EFB00956.1| excinuclease ABC, B subunit [Victivallis vadensis ATCC BAA-548] Length = 671 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/672 (48%), Positives = 451/672 (67%), Gaps = 18/672 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F++ Y P+GDQP AIAQLL +++ Q LLGVTGSGKTFT+A IE + RP + Sbjct: 1 MGIFKLHAPYAPAGDQPQAIAQLLDNFKRQQRYQTLLGVTGSGKTFTLANAIEKLDRPVL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLYSEFK FFP NAVEYF+SYYDYY PE+Y+P+TDTYI K++SINE I++ Sbjct: 61 VLSHNKTLAAQLYSEFKAFFPENAVEYFISYYDYYLPESYIPQTDTYIAKDASINENIEK 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R SAT SL+ER D IVV+SVSCIYG+GS + Y+ + V++++GD++++ E+L LV QY Sbjct: 121 LRLSATASLVERRDVIVVASVSCIYGLGSPDDYADLCVRVEVGDTLDRDEILRRLVDIQY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ +G FRV GD ++++ +D R+S FG+++E + ++G+ + + Sbjct: 181 GRNDMSPEKGEFRVRGDVVDVYEPQRDDF-IRISFFGDEVESLERRDVVSGKVKTRPKFV 239 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 ++ H+V P+ +N A I E+ R+ EK L+EAQRL QR+TYD+EM++ G Sbjct: 240 TLFPCKHFVLPQERINGAADRILAEMAERVAWFEKNNLLVEAQRLYQRVTYDIEMMKEIG 299 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYS YL+ R PG P LF++ P D L +DESHVT+PQ+ MY+ D +RK L Sbjct: 300 YCSGIENYSMYLSNRRPGSRPYCLFDFFPPDFLTVIDESHVTLPQLQAMYKADRNRKMVL 359 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 ++GFRLP+ ++NRPL+FEE+ L T+ VSATPG +EL+ VE I+RPTGL+DP Sbjct: 360 IDHGFRLPTALENRPLQFEEFEQLTGDTVFVSATPGEYELKHSDK-PVELIVRPTGLLDP 418 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+R QV+DV EI A G R L+T LTK+ +E L +YL E ++ Y+HSE+ Sbjct: 419 VIEVRPLEGQVDDVIGEIRRATAAGERTLVTTLTKKSSERLADYLAELGVKASYLHSELD 478 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 LER+ ++ LR G FD ++GINLLREG+D+PE LVAILDADKEGFLRS+ SL+QT GR Sbjct: 479 ALERVRVLNKLRDGDFDCVIGINLLREGIDLPEVALVAILDADKEGFLRSERSLVQTAGR 538 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN + +VILYAD +T S++ ID+T RR+KQ+E+NK HNI P+++++ I I+ Sbjct: 539 AARNKDGRVILYADNLTPSMKGLIDQTNARRKKQMEYNKLHNITPETIRKGRSLTIGEIV 598 Query: 738 ---------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 L D T+ S D L LS +A + L +M AA+ L FE Sbjct: 599 STGSDKQKSKLRMPKLADTMFTD-STDLGSLGLSAADQEALIAELTGEMLAAAEALEFER 657 Query: 783 AARIRDEIKRLK 794 AA +RD+IK L+ Sbjct: 658 AADLRDQIKALQ 669 >gi|332665062|ref|YP_004447850.1| UvrABC system protein B [Haliscomenobacter hydrossis DSM 1100] gi|332333876|gb|AEE50977.1| UvrABC system protein B [Haliscomenobacter hydrossis DSM 1100] Length = 673 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/662 (50%), Positives = 453/662 (68%), Gaps = 13/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + Y P+GDQP AIA+L +++ E+ Q+LLGVTGSGKTFT+A VI + RP +V+ Sbjct: 3 FQLVSKYSPTGDQPLAIAKLTDSLNAGERTQVLLGVTGSGKTFTIANVIANVNRPTLVLT 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLY E + FFP NAVEYFVSYYDYYQPEAY+ +DTYIEK+ INEQ+D++R Sbjct: 63 HNKTLTAQLYGELQEFFPDNAVEYFVSYYDYYQPEAYLSVSDTYIEKDLLINEQVDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL R D I+V+SVSCIYG+G+ E Y I++++ G + + L LV+ Y R Sbjct: 123 RATSNLLSGRRDIIIVASVSCIYGMGNPEDYKSGIIRIQKGQVISRNAFLYKLVESLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +I R TFRV GD+++I ++ D +R+ FG++I+EI TG++I + I Sbjct: 183 TEIEFKRATFRVRGDTVDINLPYV-DYGYRIKFFGDEIDEIEMIEIETGKRIDRMNDAAI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + Y+ P+ N ++ I++EL + E+EGRLLEA+R+ +R +DLEM++ G C Sbjct: 242 FPANLYIAPKDRQNMIIRQIEDELHDQEKYFEREGRLLEAKRIHERTLFDLEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYSR+ GR G P L +Y PED LL +DESHVTIPQI GMY GD RK +L E Sbjct: 302 NGVENYSRFFDGRMVGTRPFCLLDYFPEDYLLVIDESHVTIPQIRGMYGGDRARKLSLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS MDNRPL F E+ + I VSATPG +E EQ G++VEQ+IRPTGL+DPP+ Sbjct: 362 HGFRLPSAMDNRPLNFTEFEGMFSQVIFVSATPGDYEFEQTGGVVVEQLIRPTGLLDPPI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + R+L+T LTKRMAE+LT+YL + NI++RY+HSEV T+ Sbjct: 422 EVRPSLNQIDDLLEEIQQRIAREERVLVTTLTKRMAEELTKYLAKLNIKIRYIHSEVDTM 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+RDLRLG FDVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL QT GRAA Sbjct: 482 ERVEILRDLRLGGFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNDRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PIL 737 RN N VI YAD IT S+Q IDET RRR Q+ +N++ I P++V + E+++ IL Sbjct: 542 RNSNGLVIFYADKITDSMQRTIDETERRRVIQMAYNEERGITPKTVFKSKEEILNQRSIL 601 Query: 738 LEDAATT-------NISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 T+ NI+I A L +++ + + ++M AA L+F AA++RD Sbjct: 602 DVRGKTSQAYIEPENITIAADPLVSYMTRDQLEKLASETERKMKQAAKELDFITAAQMRD 661 Query: 789 EI 790 E+ Sbjct: 662 EL 663 >gi|325280315|ref|YP_004252857.1| UvrABC system protein B [Odoribacter splanchnicus DSM 20712] gi|324312124|gb|ADY32677.1| UvrABC system protein B [Odoribacter splanchnicus DSM 20712] Length = 669 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/666 (49%), Positives = 457/666 (68%), Gaps = 18/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI QL++G+ S Q+LLGVTGSGKTFT+A VI + RP ++++ Sbjct: 3 FKLTSEFQPTGDQPEAIRQLIQGLQSGRSSQVLLGVTGSGKTFTVANVINEIHRPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 T SLL R D IVVSSVSC+YG+ ++ + LK G ++ + LL LV Y Sbjct: 123 RTTASLLSGRRDVIVVSSVSCLYGMADPRAFGSNVTHLKRGMTISRNVLLRRLVDALYAN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +I RG FR G++++IFP+ + VA+R+ + + I+ IS F P+TGQ I + + + Sbjct: 183 NEIEFKRGCFRAKGETVDIFPAIETYDGVAYRIEFWDDVIDRISSFNPVTGQSIGSQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + T+ A+ I ++L+ +L L++ G+ +EA+RLE+R+ YD+EM+ G Sbjct: 243 DIYPANLFVTDKATIAHALVEIGQDLQDQLAYLKEIGKFMEAKRLEERVKYDMEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G P L +Y PED L+ +DESHVT+PQI MY GD RK TL Sbjct: 303 YCPGIENYSRYFDGRKAGVRPFCLLDYFPEDFLMVIDESHVTLPQIRAMYGGDHARKLTL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLP+ DNRPL F+E+ TI +SATP +ELE+ +GIIVEQIIRPTG+ DP Sbjct: 363 VDYGFRLPAAFDNRPLTFDEFESKTGQTIYISATPADYELEKSEGIIVEQIIRPTGIPDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EI ++ Q++ + +EI R L+T LTKRMAE+L++YL I+ +Y+HS+V Sbjct: 423 VIEIVPSKNQIDHLVNEIQQRIDLRERTLVTTLTKRMAEELSKYLDRIGIKCQYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ER++I+ +LR G DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GR Sbjct: 483 TIERVKILENLRKGIIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV+ KVI+YAD +T+S+Q IDET RREKQL +N++H+I P+ +I + D L Sbjct: 543 AARNVDGKVIMYADQVTRSMQETIDETNYRREKQLRYNEEHHIVPR----QIYKSTDAAL 598 Query: 738 LEDAATTNISIDAQQLSL---------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 +D T+ ++ + L L SK + + ++ + M AA L+F EAAR+RD Sbjct: 599 TQD--TSKAYVEEEHLHLVADPVVAYMSKPEIEKMIQKTKAAMQKAAKELDFIEAARLRD 656 Query: 789 EIKRLK 794 E+ +L+ Sbjct: 657 EMFQLE 662 >gi|227875382|ref|ZP_03993523.1| excision endonuclease subunit B [Mobiluncus mulieris ATCC 35243] gi|227843936|gb|EEJ54104.1| excision endonuclease subunit B [Mobiluncus mulieris ATCC 35243] Length = 743 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/613 (53%), Positives = 446/613 (72%), Gaps = 9/613 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AIA+L + I++ E+ +LLG TG+GKT T A +IE++QRP +V+ Sbjct: 18 FQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH Sbjct: 78 PNKTLAAQLTAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y + L G + + +L+ V QY R Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+I P + E++ RV FG++I+ ++ +P+TG+ + V+ I ++ Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + AM I+ E++ R +G+LLE QRL R TYDLEM+ G C Sbjct: 257 PASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD RK TL ++ Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+++E+ T+ +SATPG +EL + G+ VEQIIRPTGLVDP + Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +EI + ++ R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADK+GFLRS SLIQTIGRAAR Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD ++ S++ AIDET RRR KQL N++H I+P+ +++KI +V D + ED Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615 Query: 741 AATTNISIDAQQL 753 ID +QL Sbjct: 616 -------IDTEQL 621 >gi|332673914|gb|AEE70731.1| excision endonuclease subunit UvrB [Helicobacter pylori 83] Length = 663 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I + +P ++M Sbjct: 8 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 67 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 68 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 128 LSAAISLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 247 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELTLRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE + + EQIIRPTG Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKNNVAEQIIRPTG 424 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 484 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 485 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 604 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D ++ ++ S++ + +K L K+M A NL+FEEA R+RDEI +L Sbjct: 605 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 660 Query: 794 KS 795 ++ Sbjct: 661 RT 662 >gi|307700874|ref|ZP_07637899.1| excinuclease ABC, B subunit [Mobiluncus mulieris FB024-16] gi|307613869|gb|EFN93113.1| excinuclease ABC, B subunit [Mobiluncus mulieris FB024-16] Length = 743 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/613 (53%), Positives = 445/613 (72%), Gaps = 9/613 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AIA+L + I++ E+ +LLG TG+GKT T A +IE++QRP +V+ Sbjct: 18 FQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH Sbjct: 78 PNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y + L G + + +L+ V QY R Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+I P + E++ RV FG++I+ ++ +P+TG+ + V+ I ++ Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + AM I+ E++ R +G+LLE QRL R TYDLEM+ G C Sbjct: 257 PASHYVAGPERMERAMAGIEAEMEQRCRWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD RK TL ++ Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+++E+ T+ +SATPG +EL + G+ VEQIIRPTGLVDP + Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +EI + ++ R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADK+GFLRS SLIQTIGRAAR Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD ++ S++ AIDET RRR KQL N++H I+P+ +++KI +V D + ED Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615 Query: 741 AATTNISIDAQQL 753 ID +QL Sbjct: 616 -------IDTEQL 621 >gi|269977363|ref|ZP_06184336.1| excinuclease ABC subunit B [Mobiluncus mulieris 28-1] gi|269934666|gb|EEZ91227.1| excinuclease ABC subunit B [Mobiluncus mulieris 28-1] Length = 743 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/613 (53%), Positives = 445/613 (72%), Gaps = 9/613 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AIA+L + I++ E+ +LLG TG+GKT T A +IE++QRP +V+ Sbjct: 18 FQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH Sbjct: 78 PNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y + L G + + +L+ V QY R Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+I P + E++ RV FG++I+ ++ +P+TG+ + V+ I ++ Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + AM I+ E++ R +G+LLE QRL R TYDLEM+ G C Sbjct: 257 PASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD RK TL ++ Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+++E+ T+ +SATPG +EL + G+ VEQIIRPTGLVDP + Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +EI + ++ R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADK+GFLRS SLIQTIGRAAR Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD ++ S++ AIDET RRR KQL N++H I+P+ +++KI +V D + ED Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615 Query: 741 AATTNISIDAQQL 753 ID +QL Sbjct: 616 -------IDTEQL 621 >gi|188527894|ref|YP_001910581.1| excinuclease ABC subunit B [Helicobacter pylori Shi470] gi|188144134|gb|ACD48551.1| excinuclease ABC subunit B [Helicobacter pylori Shi470] Length = 658 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/662 (48%), Positives = 454/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKCLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYTGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D ++ ++ S++ + +K L K+M A NL+FEEA +RDEI +L Sbjct: 600 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMHLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|308063898|gb|ADO05785.1| excinuclease ABC subunit B [Helicobacter pylori Sat464] Length = 658 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/662 (48%), Positives = 453/662 (68%), Gaps = 13/662 (1%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F +++ Y P+GDQP AI L K + Q L+GVTGSGKT+TMA +I +P ++M Sbjct: 3 LFDLKSPYPPAGDQPQAIEALTKSLKDNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIM 62 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R Sbjct: 63 SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K L LV+ Y R Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++ RG+FR G+ ++IFP++ + R+ FG++IE I+ F L +I+ ++++ + Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 YA S + LN A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 + IENY+R+ TG+ P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362 Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 L EYGFRLPS +DNRPL+F+E+ NC + VSATP ELE Q + EQIIRPTG Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP E+R + QV+D++DEI L + R+L+T LTK+MAE+L +Y E ++ RYMH Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER IIR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK H+I P++V + E + Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L +D ++ ++ S++ + +K L K+M A NL+FEEA +RDEI +L Sbjct: 600 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMHLRDEIAKL 655 Query: 794 KS 795 ++ Sbjct: 656 RT 657 >gi|330836908|ref|YP_004411549.1| Excinuclease ABC subunit B [Spirochaeta coccoides DSM 17374] gi|329748811|gb|AEC02167.1| Excinuclease ABC subunit B [Spirochaeta coccoides DSM 17374] Length = 711 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/673 (49%), Positives = 453/673 (67%), Gaps = 11/673 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 N ++ F + + SGDQ AI L +G+ + E L GVTGSGKT+TMAK+IE Sbjct: 29 GNVRGEVIPFSVVAPFGTSGDQQQAIDALSEGLIAGEDRLTLKGVTGSGKTYTMAKIIEK 88 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 +QRP ++++ NK LAAQLY EFK+FFP+NAVEYFVS YDYYQPEAYVP D YIEK++ I Sbjct: 89 VQRPTLILSHNKTLAAQLYREFKSFFPNNAVEYFVSTYDYYQPEAYVPGKDLYIEKDADI 148 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N++IDR+R SA+ SL+ER D IVVS+VSCIYG+ + S M +G + L Sbjct: 149 NDEIDRLRLSASFSLMERRDVIVVSTVSCIYGLANPVSLRDMTKTYAVGMQFDHTRELEQ 208 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV+ QY+R D + RG FRV GD IEI PS++E+ A R+S+ ++I I F P++G+K Sbjct: 209 LVRMQYERNDAILKRGNFRVRGDVIEICPSYMEN-AVRISLEWDEISSIQWFDPVSGEKQ 267 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 +V T +Y +V P+ + A+ IK+E++ + G+ LEA+R++ R+ YD+E Sbjct: 268 ESVPTFTLYPAKQFVMPKEQVVKAIGRIKDEMEAQYEHFITSGKPLEAERIKTRVEYDME 327 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 ML+ G C IENYSR L+ R GE P L +Y P + L F+DESHVT+PQ+ MY GD Sbjct: 328 MLQEIGYCSGIENYSRPLSNRKEGERPAVLLDYFPPNFLTFIDESHVTLPQVGAMYEGDR 387 Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551 RK L EYGFRLPS +DNRPL+F+E+ + + VSATPG EL + + VEQ+IRP Sbjct: 388 SRKMNLVEYGFRLPSALDNRPLKFDEFTHVVGQRVFVSATPGKLELAESSRV-VEQVIRP 446 Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 TGL+DP + +R Q+E++Y EI + R+L+T LTK+M+EDLT+YL ++VRY Sbjct: 447 TGLLDPEISVRPTEGQMENLYGEIRSCIAKKQRVLVTTLTKKMSEDLTDYLTNLGLKVRY 506 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +HSE++T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE LVAILDADK GFLRS+TSL Sbjct: 507 LHSEIETIERVEILRDLRLGVFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSETSL 566 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 IQTIGRAARN +VI+YAD ++ ++ AI ET RRR Q+E+NK H I P ++ + I + Sbjct: 567 IQTIGRAARNAEGRVIMYADRMSDAMSTAIKETNRRRALQMEYNKAHGITPTTIVKAIQD 626 Query: 732 VIDPILLEDAATT-----NISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + I+ E T +I+I + + L K+ K ++K L ++M A NL FE AA Sbjct: 627 I---IIREKTETLEIQKEDIAIRKSRFNLLEAKERKKYIKELEQEMLECAKNLEFERAAM 683 Query: 786 IRDEIKRLKSSPY 798 +RDEI ++ + Sbjct: 684 LRDEITAIREGRF 696 >gi|89897859|ref|YP_514969.1| excinuclease ABC subunit B [Chlamydophila felis Fe/C-56] gi|89331231|dbj|BAE80824.1| excision nuclease helicase subunit B [Chlamydophila felis Fe/C-56] Length = 656 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/656 (51%), Positives = 441/656 (67%), Gaps = 11/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ D+ P GDQPAAIA+L +G+ ++ + Q+LLG TGSGKTFT+A V+ + RP +V+A Sbjct: 3 FELRADFAPCGDQPAAIAKLTQGVRNQAQFQVLLGTTGSGKTFTIANVVANINRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK IN +ID++R Sbjct: 63 HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS ++Y+ M ++L+I + L S LVK Y+ Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPDNYASMALELEIEKEYPRSLLTSQLVKMNYQAS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R TFR G I+IFP++ D A R++ F + + I PLT + +V ++ IY Sbjct: 183 PVA-QRATFRERGSVIDIFPAYESDRAIRLAFFNDTLTSIEYNDPLTMMPLESVASVIIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ R +E RL QR +D+EM++ TG C+ Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERMLFFHD--RPIEQDRLFQRTIHDIEMIKETGFCK 299 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ T PG PP L +Y PED LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 300 GIENYSRHFTKTPPGSPPACLLDYFPEDFLLVIDESHQTLPQMRAMYRGDLSRKQSLVEY 359 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG EL + +G +VEQIIRPTG+ DP E Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGEMELNESRGHVVEQIIRPTGIPDPIPE 419 Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 IR A QV+D+ +EI L+ Q +IL+ +TK++AED+ +L E +I Y+HS ++T Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQE-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ DLRLG DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRA Sbjct: 479 AERTRILTDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV KVI YAD T+SI+ + ET RRR+ QLE+NK HNI PQ + + I+ +PI Sbjct: 539 ARNVEGKVIFYADQKTQSIEQTLKETERRRKIQLEYNKAHNITPQPIIKAILA--NPIPQ 596 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T D ++ LS K+ + +K M AA F+EAA+ RD++K K Sbjct: 597 GRKQETQ---DNLKMPLSTKELEKLIKKYENLMQQAAHEFRFDEAAKYRDKMKAAK 649 >gi|325971742|ref|YP_004247933.1| UvrABC system protein B [Spirochaeta sp. Buddy] gi|324026980|gb|ADY13739.1| UvrABC system protein B [Spirochaeta sp. Buddy] Length = 689 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/681 (49%), Positives = 452/681 (66%), Gaps = 19/681 (2%) Query: 130 SINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 SI N D++F F++ + Y PSGDQ AI +L G+ + Q L GVTGSGKT+TM Sbjct: 14 SITNVHGDVSFQNKPFRVVSAYDPSGDQAQAIEKLSAGLVQGDVYQTLKGVTGSGKTYTM 73 Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 AK+IE +QRP +V++ NK LAAQLY EFK+FFP NAVEYFVS YDYYQPEAYVP D YI Sbjct: 74 AKIIEQVQRPTLVLSHNKTLAAQLYREFKSFFPDNAVEYFVSTYDYYQPEAYVPGKDLYI 133 Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 EK++ IN +IDR+R SA+ SL+ER D IVV++VSCI+G+ + S M+ GD E Sbjct: 134 EKDADINVEIDRLRLSASFSLMERRDVIVVATVSCIFGLANPVSVRDMVHTFTKGDQFEH 193 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 ++L LV+ QY+R D + RG FRV GD IEI PS+LE+ A R+S+ ++I I F P Sbjct: 194 HDVLEKLVRMQYERNDAILKRGAFRVKGDIIEICPSYLEN-AVRISIDWDEIASIQWFDP 252 Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 ++G+K V++ +Y +V P + A+ I+ E++ ++ G+ LEA+R++ R Sbjct: 253 VSGEKQEMVDSYTLYPAKQFVMPPEQVKAAIGKIRSEMEDQVEYFNSMGKPLEAERIKTR 312 Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 + YDLEMLE G C IENYSR L+ R GE P L +Y P D + F+DESHVT+PQ+ Sbjct: 313 VEYDLEMLEEIGYCSGIENYSRPLSDRKVGERPAVLLDYFPPDFVTFIDESHVTLPQVGA 372 Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MY GD RK L YGFRLPS +DNRPL+ E+ + I VSATPG EL IV Sbjct: 373 MYEGDRSRKLNLVNYGFRLPSALDNRPLKAVEFEQVVQQRIYVSATPGKTEL-GLSSQIV 431 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQ+IRPTGL+DP +E+RS+ Q+E++Y EI + R+L+T LTK+M+EDLT+Y Sbjct: 432 EQVIRPTGLLDPQIEVRSSEGQMENLYGEIRSVIAKKQRVLVTTLTKKMSEDLTDYFASL 491 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++VRY+HSE+ T+ER+EI+RDLRLG FD+LVGINLLREGLD+PE L+AILDADK GFL Sbjct: 492 GLKVRYLHSEIDTIERVEILRDLRLGVFDILVGINLLREGLDLPEVSLIAILDADKIGFL 551 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS TSLIQ IGRAARN +VI+YAD ++ +++ +I ET RRR Q +N++H I P ++ Sbjct: 552 RSTTSLIQIIGRAARNSEGRVIMYADRMSSAMEESIGETNRRRAIQTAYNEEHGITPTTI 611 Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADN 777 + + ++ LE I Q L++ K K ++K+L K+M AA N Sbjct: 612 VKAVQDI-----LEREREVTKEIQKQDLTILKSGYNLFNANDRKKYVKALEKEMLEAAKN 666 Query: 778 LNFEEAARIRDEIKRLKSSPY 798 L FE AA IRDEI ++ + Sbjct: 667 LEFERAAIIRDEIAAIREGQF 687 >gi|32267047|ref|NP_861079.1| excinuclease ABC subunit B [Helicobacter hepaticus ATCC 51449] gi|81835926|sp|Q7VFX7|UVRB_HELHP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|32263099|gb|AAP78145.1| excinuclease ABC [Helicobacter hepaticus ATCC 51449] Length = 658 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/658 (50%), Positives = 445/658 (67%), Gaps = 7/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P+GDQP AI ++ + IH+ + L+GVTGSGKT+TMA +I + P ++M Sbjct: 4 FILDSQFAPAGDQPQAIQKITQFIHNGAQYSTLVGVTGSGKTYTMANIIANLNIPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R Sbjct: 64 HNKTLAAQLYSEFRGFFPKNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IV++SVS YG+G+ Y MI + +IG QK LL LV Y R Sbjct: 124 SATTSLLAYDDIIVIASVSANYGLGNPAEYLTMIHKFEIGQEEAQKTLLLKLVDMGYTRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ I+IFP++ E R+ FG++IE I F L + +E+ +Y Sbjct: 184 DTIFERGNFRVNGEVIDIFPAYNEKEFIRIEFFGDEIERIGVFDALERTALTQLESFVLY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L +A+K I+ EL+ RL E + + +E QRL+ R +DLEM++ +G C+ Sbjct: 244 AANQFIVGAQRLQSAIKNIEVELENRLEEFVSQDKQIEYQRLKTRTEFDLEMIKESGICK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ GE P +L +Y + LL VDESHV++PQ GMY GD RK L Sbjct: 304 GIENYARHLTGKKAGETPYSLLDYFEQKGKPYLLIVDESHVSLPQFGGMYAGDRSRKEVL 363 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPLRF+E+ P + VSATP ELE Q I EQIIRPTGL+DP Sbjct: 364 VEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAQKELELSQEHIAEQIIRPTGLLDP 423 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+R A V D+YDEI + R+L+T LTK+MAE+L++Y E I+VRYMHS++ Sbjct: 424 LYEVRDADNAVLDLYDEIKARIAKNQRVLITTLTKKMAEELSKYYAELGIKVRYMHSDID 483 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IR LRLG+FDVL+GINLLREGLD+PE L+AI+DADKEGFLRS+TSLIQT+GR Sbjct: 484 AIERNHLIRALRLGEFDVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQTMGR 543 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV KVILYA IT S+Q A + T RR KQ E N+ HNI P+SV+ + + + Sbjct: 544 AARNVEGKVILYAKKITGSMQRAFEVTDYRRTKQEEFNRIHNITPKSVQRNVEQELK--- 600 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +E + + + A + + K + ++ +K L +MH AA L FEEAAR+RDEI R+++ Sbjct: 601 IESSGLSRLYEKASK-KIPKSERESIIKELNIKMHQAAKALEFEEAARLRDEIARIRT 657 >gi|187251936|ref|YP_001876418.1| excinuclease ABC subunit B [Elusimicrobium minutum Pei191] gi|186972096|gb|ACC99081.1| Excinuclease ABC, B subunit [Elusimicrobium minutum Pei191] Length = 665 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/664 (49%), Positives = 451/664 (67%), Gaps = 18/664 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + PSGDQP AI L + I + + Q LLGVTGSGKT+TMA +I PA++M+ Sbjct: 4 FKLKAPFSPSGDQPQAIKNLCQNIKNGQTRQTLLGVTGSGKTYTMANIIAQTDMPALIMS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK+LAAQLY+EFK FFP N+VEYF+SYYDYYQPEAY+P+TDTYIEK+SSINE I++MR Sbjct: 64 PNKVLAAQLYAEFKQFFPENSVEYFISYYDYYQPEAYIPQTDTYIEKDSSINEHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 AT SLL RND IV++SVS IY IGS +++++M + +K G + + + S L+K QY+R Sbjct: 124 KATTSLLTRNDVIVIASVSSIYNIGSPDNFAEMCLYVKKGIPLNRVAVTSLLIKNQYERS 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ G FR+ G +I+I P + E R+ M + + + +P+TG I V+ IY Sbjct: 184 EMEFTPGKFRLRGGNIDILPPYRE-TGIRIEMGPQAVNALYKIHPITGDVIEEVDEEFIY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V ++ A+K I EE + R+ ELE G+ LEA RL+QR YD+EML+ TG C+ Sbjct: 243 PAKHFVVKESDIDRAIKEINEEKEGRVKELEAIGKPLEAYRLKQRTEYDMEMLKQTGFCK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI--PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 IENYSR L GR PG P LF+Y E+ L+F+DESHV +PQ+ GMY GD RK L Sbjct: 303 GIENYSRPLAGREPGSRPDCLFDYFRKHENFLVFIDESHVAVPQVRGMYNGDRSRKQMLI 362 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 ++GFRLPS +DNRPL+F+E+ + P+T+ VSATPG +EL IVEQ+IRPTGLVDP Sbjct: 363 DFGFRLPSALDNRPLKFDEFEKILPSTVFVSATPGPYELTVSANNIVEQVIRPTGLVDPQ 422 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V I Q+ + +I ++G R L+ LTK+ AEDLT + E+ I+ RY+HS++++ Sbjct: 423 VSIHPTAGQIGHLISKIEERIKKGQRSLVLSLTKKTAEDLTVFFDEKGIKARYLHSDIES 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER+EI++ + G FDVLVGINLLREGLDIP+ GLVAIL AD EGFLR++T+LIQ GRA Sbjct: 483 LERVEILQKFKQGVFDVLVGINLLREGLDIPQVGLVAILGADNEGFLRNETTLIQISGRA 542 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN++ +V+LYAD T SI+ A+ E RRREKQ +NK+H+I PQS+ + +E D Sbjct: 543 ARNIDGEVVLYADRKTDSIKNALAEMDRRREKQTAYNKEHHITPQSIIKAEIEFKD---F 599 Query: 739 EDAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 E+ A T N + + +L K +K + +QM AADNLNFE A +RD + Sbjct: 600 ENTAKTEGLRALHNFTDIPKPDNLPK-----MIKEIERQMKDAADNLNFELAVDLRDRML 654 Query: 792 RLKS 795 LKS Sbjct: 655 ELKS 658 >gi|90578521|ref|ZP_01234332.1| excinuclease ABC subunit B [Vibrio angustum S14] gi|90441607|gb|EAS66787.1| excinuclease ABC subunit B [Vibrio angustum S14] Length = 656 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/621 (51%), Positives = 433/621 (69%), Gaps = 2/621 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP A+A+L+ I Q L GVTGSGKTFTMA +I +QRP +++A Sbjct: 6 FILHSAYPPSGDQPEALARLIGNIQDGVTHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S++N+Q++R+R Sbjct: 66 HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAVNQQLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D IVV+SVS IYG+G Y + + L +G ++++++ + LV QY R Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPAQYRAVQIPLSVGMTIDREDFIQRLVALQYSRC 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + I R TFRV G+ +I+P+ E A RV MF + IE++ F P+TG+ + +++ + Sbjct: 186 ERTIERATFRVHGEIFDIYPADSESKAIRVVMFDDTIEQLQWFDPITGKVLGDIDHYFVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + L A I++EL+MR+ EL E R++EA RL +R T+D+EM++ G C Sbjct: 246 PKTLYAASKDKLMKASIEIQKELEMRVTELNNENRIVEAARLYERTTHDIEMMQQLGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS YL R+P PP TL +Y+PED LLF+DESHV IPQIS MYR D RK TL +Y Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPEDGLLFIDESHVMIPQISAMYRSDVSRKETLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F+E+ ++P T+ VSATPG +EL++ Q + EQIIRPTGL+DP VE Sbjct: 366 GFRLPSAKNNRPLMFKEFEQIKPQTVFVSATPGEYELKKSQQHVTEQIIRPTGLLDPIVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQ +D+ EI+ Q+ R+L+T LTK+ AE L E + E+ I+V Y+HSEVKT + Sbjct: 426 VRPLATQTDDLLKEISERTQKDERVLVTTLTKKSAEALYELMVEQGIKVSYIHSEVKTEQ 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR GKFDVL+GINLLREGLDIPE LVA+L AD GFLRS +LIQ IGRAAR Sbjct: 486 RVEIIDDLRAGKFDVLIGINLLREGLDIPEASLVAVLHADHAGFLRSTLALIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738 N N K ILYAD IT ++Q A+ E+ +RRE+Q E+NK HNI P S K K ++ + P Sbjct: 546 NANGKAILYADKITPAMQQAMAESQQRRERQQEYNKAHNITPASSKRKKADINNNEPAQH 605 Query: 739 EDAATTNISIDAQQLSLSKKK 759 +N+S QQ++ ++K+ Sbjct: 606 SVEFCSNLSELCQQITATEKE 626 >gi|306818695|ref|ZP_07452417.1| excision endonuclease subunit UvrB [Mobiluncus mulieris ATCC 35239] gi|304648381|gb|EFM45684.1| excision endonuclease subunit UvrB [Mobiluncus mulieris ATCC 35239] Length = 743 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/613 (53%), Positives = 444/613 (72%), Gaps = 9/613 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y P+GDQP AI +L + I++ E+ +LLG TG+GKT T A +IE++QRP +V+ Sbjct: 18 FQVISNYQPAGDQPQAIKELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +EF+ P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH Sbjct: 78 PNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL R D +VVSSVSCIYG+G+ E Y + L G + + +L+ V QY R Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG FRV GD+I+I P + E++ RV FG++I+ ++ +P+TG+ + V+ I ++ Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV + AM I+ E++ R +G+LLE QRL R TYDLEM+ G C Sbjct: 257 PASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD RK TL ++ Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+++E+ T+ +SATPG +EL + G+ VEQIIRPTGLVDP + Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ Q++D+ +EI + ++ R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E++R+LR G FDVLVGINLLREGLD+PE LVAILDADK+GFLRS SLIQTIGRAAR Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+ +V +YAD ++ S++ AIDET RRR KQL N++H I+P+ +++KI +V D + ED Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615 Query: 741 AATTNISIDAQQL 753 ID +QL Sbjct: 616 -------IDTEQL 621 >gi|330719341|ref|ZP_08313941.1| excinuclease ABC subunit B [Leuconostoc fallax KCTC 3537] Length = 603 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/602 (52%), Positives = 430/602 (71%), Gaps = 6/602 (0%) Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 M+ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++ Sbjct: 1 MSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKL 60 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R+SAT +L ER+D I+V+SVS I+G+G Y +V L+ G + +LL L+ Q++ Sbjct: 61 RNSATSALFERDDVIIVASVSSIFGLGDPHQYQDHVVSLRNGLEYGRDQLLRDLIDIQFQ 120 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI RG FRV GD +EIFP+ ++ A R+ FG++I+ I EF+ LTG+ + ++ I Sbjct: 121 RNDIDFQRGRFRVRGDVVEIFPASSDENALRIEFFGDEIDRIREFHALTGEVVAELDHIA 180 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ +H++T +N A+ IK EL +L E+EG+LLEAQRL+QR YDL M+E G Sbjct: 181 IFPATHFMTNDAIMNRAIGTIKVELDEQLKVFEQEGKLLEAQRLKQRTEYDLAMMEEMGY 240 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 IENYSR++ GR PGEPP TL ++ P+D L+ VDESHVT+PQ+ GMY GD RK L Sbjct: 241 TNGIENYSRHMDGRKPGEPPFTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDKARKQQLV 300 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL +E+ I +SATPG +E E+ + I +QIIRPTGL+DP Sbjct: 301 DYGFRLPSALDNRPLTLQEFEKHVNQIIYMSATPGVYESERVPEKYIAQQIIRPTGLLDP 360 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E+R Q++D+ EIN ++ R+ +T LTKRMAEDLT+YL + +I+V Y+H+++K Sbjct: 361 EIEVRPVMGQIDDLVGEINQRVEKDERVFITTLTKRMAEDLTDYLKDLSIKVAYLHADIK 420 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLER EIIRDLRLGK+DVL+GINLLREG+D+PE LVAILDADKEGFLR++ SLIQTIGR Sbjct: 421 TLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGR 480 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N VI+YAD++T S+Q A+DET RRRE Q +N KH I P+++K+ I ++I + Sbjct: 481 AARNENGHVIMYADSVTDSMQRAMDETRRRREIQTAYNTKHGITPRTIKKDIRDLIS--V 538 Query: 738 LEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +ID +++ L K + + L ++ QM AA L+FEEAA +RD I LK Sbjct: 539 SHETNNKEETIDLTKVAFKDLPKDEQTSILNNMDGQMRAAAKALDFEEAANLRDLIMELK 598 Query: 795 SS 796 +S Sbjct: 599 TS 600 >gi|327404594|ref|YP_004345432.1| UvrABC system protein B [Fluviicola taffensis DSM 16823] gi|327320102|gb|AEA44594.1| UvrABC system protein B [Fluviicola taffensis DSM 16823] Length = 674 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/671 (48%), Positives = 460/671 (68%), Gaps = 18/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +++ P+GDQP AI QL+KGI Q LLGVTGSGKTFTMA VI+ +P ++++ Sbjct: 3 FQLVSEFKPTGDQPEAIKQLVKGIDDGHFAQTLLGVTGSGKTFTMANVIQQTGKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEK+ IN++I+++R Sbjct: 63 HNKTLAAQLYGEFKQFFPNNSVEYFVSYYDYYQPEAYLPVTDTFIEKDMQINDEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT +LL R D IV++SVSCIYGIG+ ++ I+ + +G + + L LV+ Y R Sbjct: 123 SATSALLSGRRDVIVIASVSCIYGIGNPNEFANSIIPIHVGQLFPRNKFLLRLVENLYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + RGTFRV GD+++I ++ D A RV +G++IE I P +I + I+I Sbjct: 183 TEAEFKRGTFRVKGDTVDIHLAY-ADYALRVEFWGDEIERIRTIDPENNSEIEIFQEIQI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +V+ T A+ I E++ +++ ++E ++LEA+RLE+R +YD+EM+ G C Sbjct: 242 YPANIFVSSPETTRKAIDQIGEDMVIQVENFKREKKILEAKRLEERTSYDMEMMRELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY R PG P L +Y P+D L+ VDESHVT+PQI MY GD RK L + Sbjct: 302 SGIENYSRYFDQREPGTRPFCLLDYFPDDYLMIVDESHVTMPQIRAMYGGDRARKINLVD 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFR+ + MDNRPL F+E+ L + VSATP +ELEQ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRIQAAMDNRPLMFDEFQTLINQIVYVSATPADYELEQSEGVVVEQLIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +E+ L ++ R L+T LTKRMAE+L +YL + I RY+HS++ T+ Sbjct: 422 EVRPSLNQIDDLIEEMQLRIEKDERTLVTTLTKRMAEELQKYLDKLGIACRYIHSDIDTI 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EI+R LRLG+FDVL+G+NLLREGLD+PE LVAI+DADKEGFLR++ SL+QT+GRAA Sbjct: 482 ERVEILRQLRLGEFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLVQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RN+N +VI+YAD +TKS++ I ET RRR Q+E+N+ H + P ++ K EVI Sbjct: 542 RNINGRVIMYADKMTKSMERTISETERRRAMQIEYNEAHGLVPTALN-KSTEVILKSTKV 600 Query: 734 ---DPILLEDAAT---TNISIDAQQLSLSKKKGKAHLKSL---RKQMHLAADNLNFEEAA 784 DP T + A + +++ K + K++ RKQM AA +L+F EAA Sbjct: 601 ADGDPETRSQKYTPYEAGTGLFAAEPTVNYKDPEELEKAIGAKRKQMEKAAKDLDFIEAA 660 Query: 785 RIRDEIKRLKS 795 R+RDE+ L++ Sbjct: 661 RLRDELFELQA 671 >gi|294674053|ref|YP_003574669.1| excinuclease ABC subunit B [Prevotella ruminicola 23] gi|294472062|gb|ADE81451.1| excinuclease ABC, B subunit [Prevotella ruminicola 23] Length = 679 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/671 (47%), Positives = 463/671 (69%), Gaps = 18/671 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QL +G+ ++ Q+LLGVTGSGKTFTMA VI RP ++++ Sbjct: 4 FILTSEYKPTGDQPEAIRQLTEGLDRGDRAQVLLGVTGSGKTFTMANVIAQHNRPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVE++VSYYDYYQPEAY+P TDTYIEK+ +IN++IDR+R Sbjct: 64 HNKTLAAQLYEEMKGFFPQNAVEFYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDRLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL RND +VVSSVSCIYG+GS + + +++LK G +++ LL LV Y R Sbjct: 124 SAVSNLLSGRNDVVVVSSVSCIYGMGSPVALQENVIELKKGQILDRNALLRKLVAALYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD+++I ++ E V R++ + ++I+ I E +T ++ + + ++ Sbjct: 184 NDLDLQRGNFRVKGDTVDIAMAYSE-VVLRITFWDDEIDAIEEMDAVTFDRLASFDEYRL 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + N A+ I+++L +++ E+ G ++AQR+++R+ YD+EM++ G C Sbjct: 243 YPANLFMTSQEQTNIAIHQIQDDLMKQVLYFEEIGDNIKAQRIKERVEYDMEMIKELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR GE P L ++ P+D LL +DESHV++PQIS MY GD RK L E Sbjct: 303 SGIENYSRYFDGRQAGERPYCLLDFFPDDYLLIIDESHVSVPQISAMYGGDRSRKQNLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+FEE+ I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAFDNRPLKFEEFQQEVNQVIYVSATPADYELNEAEGVVVEQVIRPTGLLDPEI 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + +G R+L+T LTKRMAE+LTEYL +++ Y+HS+V TL Sbjct: 423 EVRPSENQIDDLMDEILTRSHRGERVLITTLTKRMAEELTEYLLNHSVKTAYIHSDVATL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 DRVKILSDLRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-------------- 725 RNVN KVI+YADTIT S+QL IDET RRR KQ+++N++H+I P+ + Sbjct: 543 RNVNGKVIMYADTITASMQLTIDETLRRRLKQMKYNEEHHITPKQIVKNLSFNALQKENR 602 Query: 726 --KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 +++M A ++ D + +++ + + ++ ++M AA L+F +A Sbjct: 603 ADTKELMRNFSMAAENGDAGVRVAADPIEERMTRPQMEKLIEETTRKMKEAAKQLDFLQA 662 Query: 784 ARIRDEIKRLK 794 A+ RDEI RL+ Sbjct: 663 AQYRDEIVRLQ 673 >gi|258648590|ref|ZP_05736059.1| excinuclease ABC subunit B [Prevotella tannerae ATCC 51259] gi|260851372|gb|EEX71241.1| excinuclease ABC subunit B [Prevotella tannerae ATCC 51259] Length = 677 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/670 (48%), Positives = 469/670 (70%), Gaps = 21/670 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ F++ ++Y P+GDQP AI L G + Q+LLGVTGSGKTFT+A VI+ + +P + Sbjct: 1 MSAFKLHSEYQPTGDQPEAIEALTTGAKAGTPAQVLLGVTGSGKTFTIANVIKNLNKPTL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY+EFK+FFP NAVEY+VSYYDYYQPEAY+P +D YIEK+ +INE+IDR Sbjct: 61 VLSHNKTLAAQLYTEFKDFFPENAVEYYVSYYDYYQPEAYIPSSDLYIEKDMAINEEIDR 120 Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 +R +AT +LL R D IVVSSVSCIYG+G+ ++ + ++ LK+G S+ +LL L+ Sbjct: 121 LRLAATSALLSGRKDVIVVSSVSCIYGMGNPAAFYENVIDLKVGSSIGVTQLLQKLIASL 180 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y R D+ G FRV GD+++I+ ++ E++ RV+ +G+D++ I E L+G + E Sbjct: 181 YTRNDVAPKSGNFRVNGDTVDIYLAYTEEII-RVTFWGDDVDTIEEIDALSGYRTATFEE 239 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 K+Y + ++T + T A++ I+++L ++ + E+EG++LEA+RL +R++YD+EM+ Sbjct: 240 YKVYPANLFLTSKETQELAIRSIQDDLVEQVQKFEEEGKMLEAKRLSERVSYDIEMIREL 299 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSRY GR+PG P L ++ PED L+ +DESHVT+PQI M+ GD HRK Sbjct: 300 GHCSGIENYSRYFDGRSPGTRPYCLLDFFPEDFLIVIDESHVTVPQIRAMWGGDRHRKVN 359 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L YGFRLP+ +DNRPL F+E++ + I +SATP +EL++ +G+IVEQIIRPTGL+D Sbjct: 360 LVNYGFRLPAALDNRPLTFDEFHQMAKQVIYISATPDDYELQESEGVIVEQIIRPTGLLD 419 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 PP+E+R ++D+ +EI ++ R+L+T LTK+M+E+LT+YL + I+ Y+HS++ Sbjct: 420 PPIEVRPNDYPIDDLMEEIRQCIEREERVLVTTLTKKMSEELTDYLLKNGIKTAYIHSDI 479 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 TLER+ I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS S+ QT G Sbjct: 480 DTLERVRIMEDLRKGTYDVLVGVNLLREGLDLPEVALVAILDADKEGFLRSTRSMTQTAG 539 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----ME 731 RAARNVN +VI+YA+ IT S+Q IDET RRR KQ+ +N++H++ P+ +K+KI E Sbjct: 540 RAARNVNGRVIMYANRITTSMQQTIDETNRRRAKQIAYNEQHHLKPRQIKKKIKTNQLTE 599 Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKK------GKAHL-----KSLRKQMHLAADNLNF 780 + + E + TT D +Q S K GK L KQM AA++L+F Sbjct: 600 LSEARQSEKSTTT---YDLRQTSTPKAAEDQAVYGKKETYEERHARLEKQMKAAAEHLDF 656 Query: 781 EEAARIRDEI 790 AA++RDE+ Sbjct: 657 VLAAQLRDEL 666 >gi|110596901|ref|ZP_01385191.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031] gi|110341588|gb|EAT60048.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031] Length = 683 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/668 (49%), Positives = 447/668 (66%), Gaps = 14/668 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 +++ + Y P+GDQP AI L +G+ + Q LLGVTGSGKTFT++ VI + +P +VM Sbjct: 6 LYRLVSPYSPTGDQPKAIEALSEGVLTGNPYQTLLGVTGSGKTFTISNVIARVNKPVLVM 65 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 + NK LAAQLY E K FFP NAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 66 SHNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLR 125 Query: 260 HSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 AT SLL R D IVVSSVSCIYG+GS E + I++L+ G ++ L L+ Y Sbjct: 126 LRATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIIELRSGMEKDRDLFLKELIALHYV 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R DI G FRV GD I++ P+H E++A RV FGN+IE + F +G+ + Sbjct: 186 RDDIDPAPGKFRVRGDIIDLVPAH-EELALRVEFFGNEIESLQTFDIHSGEVLGVDPYAF 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 IY +V L AM I+ EL +L E RLLEA+RLE+R YDLEM++ G Sbjct: 245 IYPARQFVAEEAKLKEAMFAIENELAGQLNWFRAENRLLEARRLEERTRYDLEMMKELGY 304 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+L+GRN GE P L +Y PE+ L+ +DESHVT+PQI GMY GD RK L Sbjct: 305 CSGIENYSRHLSGRNAGERPYCLLDYFPEEYLVVIDESHVTLPQIRGMYGGDRSRKTILV 364 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRPLRFEE+ + P I VSATP EL + G++VEQ++RPTGL+DPP Sbjct: 365 EHGFRLPSALDNRPLRFEEFEEMAPQVICVSATPSEHELTRSGGVVVEQLVRPTGLLDPP 424 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R + Q++++ EI L +G + L+ LTKRMAEDL ++ + IR RY+HSE+K+ Sbjct: 425 VEVRPVKGQIDNLLAEIRLHTAKGNKALVMTLTKRMAEDLHDFFRKTGIRSRYLHSEIKS 484 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LERI+I+R+LR+G DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRA Sbjct: 485 LERIQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRA 544 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV V+LYAD +T+SI+ +DET RRR Q +N++H I P+S+ + + +++D + Sbjct: 545 ARNVEGFVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGIVPRSIIKSVDQILDTTGV 604 Query: 739 EDAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 DA + +++ S++ +G A LR +M AA ++ +E+AA + Sbjct: 605 ADAEERYRRKRFGLEPKPERMLAGLLESMTPAEGYAMAAELRIEMQEAAVHMEYEKAAYL 664 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 665 RDEIAKLE 672 >gi|15791178|ref|NP_281002.1| excinuclease ABC subunit B [Halobacterium sp. NRC-1] gi|169236934|ref|YP_001690134.1| excinuclease ABC subunit B [Halobacterium salinarum R1] gi|22257071|sp|Q9HMT9|UVRB_HALSA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|10581796|gb|AAG20482.1| excision nuclease chain B [Halobacterium sp. NRC-1] gi|167728000|emb|CAP14788.1| excinuclease ABC subunit B [Halobacterium salinarum R1] Length = 689 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/663 (48%), Positives = 444/663 (66%), Gaps = 7/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AIA+L+ G + Q LLGVTGSGKT T++ V+E +Q+P +V+A Sbjct: 19 FRVEAPFDPAGDQPDAIAELVAGYEQGAQQQTLLGVTGSGKTNTVSWVVEELQQPTLVIA 78 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF++ FP NAVEYFVSYY+YYQPEAYV +TD YIEK++SIN++IDR+RH Sbjct: 79 HNKTLAAQLYEEFRSLFPDNAVEYFVSYYNYYQPEAYVEQTDKYIEKDASINDEIDRLRH 138 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G +Y +M ++++ G S+ + +LL+ LV Y R Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPRNYEEMSLRVERGQSIGRDQLLAKLVDLNYDRN 198 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++E++P + RV +G++I+ +++ PL G + + Sbjct: 199 DVDFTQGTFRVRGDTVEVYPMYGR-YPVRVEFWGDEIDRMAKLDPLEGTVESEEPAVLFH 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P + A++ I+ ++ R+ E+ G ++ AQR+E+R T+DLEM+ G C Sbjct: 258 PAEHYSVPDAEMEQAIERIRTDMHERVRHFERTGDMVAAQRIEERTTFDLEMMAEAGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS YL+ R G+ P TL +Y P+D L +DESH T+PQI G Y GD RK +L + Sbjct: 318 GIENYSVYLSDREVGDAPYTLLDYFPDDFLTVIDESHRTVPQIKGQYEGDKSRKDSLVDN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL F E+ T+ VSATPG E Q +VEQI+RPT LVDP + Sbjct: 378 GFRLPTAYDNRPLTFAEFADKTDRTLYVSATPGDHERAQSAN-VVEQIVRPTHLVDPDIS 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I A QVED+ D I+ + R+L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 437 IADATGQVEDLMDRIDERVARDERVLVTTLTKRMAEDLTEYLEEAGVAVEYMHDETDTLE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E++R LRLG++DVLVGINLLREGLDIPE LVAILDAD++GFLRS+TSL+QT+GRAAR Sbjct: 497 RHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETSLVQTMGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD T ++Q AIDET RRR Q N+ H P ++++ + ++ P Sbjct: 557 NVNGEVVLYADETTDAMQAAIDETQRRRRIQRAFNEDHGTTPTTIEKAVGDMNLP----- 611 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 A T+ + A +++ ++ L +M AA NL FE AA IRD ++ L+ + Sbjct: 612 GAETDTADVAGDAPSDEQEAALLVEDLEARMEDAASNLEFELAADIRDRMRELREAFDLD 671 Query: 801 GLD 803 G D Sbjct: 672 GGD 674 >gi|198274586|ref|ZP_03207118.1| hypothetical protein BACPLE_00738 [Bacteroides plebeius DSM 17135] gi|198272033|gb|EDY96302.1| hypothetical protein BACPLE_00738 [Bacteroides plebeius DSM 17135] Length = 680 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/666 (50%), Positives = 456/666 (68%), Gaps = 19/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AIAQL +GI Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELISDYQPTGDQPEAIAQLTEGIRQHVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D IVVSSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSSLLSGRKDVIVVSSVSCIYGMGNPADFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++IF ++ + V RV + ++I+ I E P++G +I E KI Sbjct: 183 NDIELNRGNFRVKGDTVDIFLAYTDSV-LRVMFWDDEIDGIEEIDPVSGHRIGTFEEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L ++ E+ G+ EA+RL +R+TYD+EML G C Sbjct: 242 YPANLFMTTKESTLRAIHQIEDDLTKQVAYFEEIGKPYEAKRLYERVTYDMEMLRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG P L ++ PED L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL FEE+ + I VSATP +EL+Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLTFEEFQQMAKQVIYVSATPAEYELQQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI ++ R+L+T LTKRMAE+LTEYL IR Y+HS+V+TL Sbjct: 422 DVRPSLNQIDDLMEEIQQRIEREERVLVTTLTKRMAEELTEYLLNNGIRCAYIHSDVETL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I+ +LR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERIKIMDELREGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP----------------Q 723 RNVN KVI+YAD IT S++ IDET RRREKQL +N+ H I P Q Sbjct: 542 RNVNGKVIMYADRITDSMRQTIDETNRRREKQLAYNEAHGITPKQITRSRTNALLDIEKQ 601 Query: 724 SVKEKIMEVIDP-ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 S +E + +P E A + + D ++K + + ++ RK M AA L+F E Sbjct: 602 SSQENSSKPKEPRAYTETEAQLHAAADPVVQYMTKGQLQKSIEQTRKLMQEAAKKLDFIE 661 Query: 783 AARIRD 788 AA+ RD Sbjct: 662 AAQYRD 667 >gi|300521564|gb|ADK25993.1| UvrB [Candidatus Nitrososphaera gargensis] Length = 659 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/658 (49%), Positives = 455/658 (69%), Gaps = 15/658 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 +F + + PSGDQP AI QL++G+ + Q LLGVTGSGKT+T+A VI + +V Sbjct: 7 SFALAKDAFPPSGDQPEAIEQLVRGVQKGGR-QTLLGVTGSGKTYTIANVIARTNKNTLV 65 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258 ++ NK LAAQLY+EFK FFP N V YFVS+YDYYQPE+Y+P+TDTYIEK++ +NE+I++M Sbjct: 66 ISHNKTLAAQLYAEFKEFFPENNVGYFVSFYDYYQPESYIPQTDTYIEKDTEVNEKIEKM 125 Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 R AT L+ I+VS+VSCIY +GS + + + + L G +++K L+ +L++ +Y+ Sbjct: 126 RLEATAMLMSGEPTIIVSTVSCIYSLGSPKEWEKSAITLTKGMEIDRKILIHNLIEARYE 185 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ ++ G FR GD+I+I P + +D+ RVS+FG++IE IS ++ +K+R+V +K Sbjct: 186 RNDMSLMPGNFRAKGDTIDIIPGYSDDII-RVSVFGDEIERISIHDHVSMKKLRDVNAVK 244 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 I+ HY+T + N+A++ IK EL+ L L E LE QRL QR YDLEM+E G Sbjct: 245 IFPAKHYITDDDSRNSALESIKRELENWLPNLPSE---LERQRLAQRTKYDLEMIEELGY 301 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C IENYSR+L GR PG+PP L ++ +D LL +DESHVT+PQ+ GMY GD RK L Sbjct: 302 CSGIENYSRHLDGRAPGQPPFCLLDFFGDDFLLVIDESHVTLPQLHGMYNGDHTRKKMLI 361 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 +YGFRLPS DNRPL+FEE+ I VSATPG +EL+ + EQ++RPTGLVDP Sbjct: 362 DYGFRLPSSYDNRPLKFEEFEKYLRNVIFVSATPGPYELKSSWQV-AEQLVRPTGLVDPK 420 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VEIR + Q+ED+ EI A++ R L+T LTKRMAEDL E+L + +RVRY+HSE++ Sbjct: 421 VEIRPTKNQMEDLIKEIKNRAKKNQRTLVTTLTKRMAEDLAEFLAKNEVRVRYLHSEIEG 480 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER ++IR LRLG+FD LVGINLLREGLDIPE LVAILDADKEGFLR+ TSLIQT GRA Sbjct: 481 LERTQLIRQLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRNTTSLIQTFGRA 540 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN++ VI+Y+D T+S++ AI+ET RRR+KQLE+NKKH I P+++ + I E I Sbjct: 541 ARNLDGAVIMYSDHSTESMKQAIEETERRRKKQLEYNKKHKIKPRTIVKPIPESTKEI-- 598 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D + S+ Q L + +A +K A+ L+FE+A R+++ +++ + Sbjct: 599 GDMSVETKSMTRQDLVKLAVETEATMKRF-------AEELDFEKAIMFREKLSKIRKA 649 >gi|21674365|ref|NP_662430.1| excinuclease ABC subunit B [Chlorobium tepidum TLS] gi|81790952|sp|Q8KC79|UVRB_CHLTE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|21647543|gb|AAM72772.1| excinuclease ABC, subunit B [Chlorobium tepidum TLS] Length = 684 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/667 (48%), Positives = 442/667 (66%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP+AI L G+ ++ Q LLGVTGSGKTFT++ VI + RP +V++ Sbjct: 11 FKLESPYGPTGDQPSAIKALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVNRPTLVLS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 71 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSLDKYIAKDLKINDEIERLRL 130 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL RND IVVSSVSCIYG+GS E + IV+L+ G +++ E L LV Y R Sbjct: 131 RATSALLSGRNDVIVVSSVSCIYGLGSPEDWMAQIVELRQGMELDRDEFLQRLVALHYFR 190 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + G FRV GD I++ P H E++A R+ FG++I+ I F P +G+ I E I Sbjct: 191 DDVDLSPGRFRVRGDVIDLVPGH-EELALRIEFFGSEIDSIHTFDPKSGEIIGRDEYAFI 249 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V L AM I+ EL RL L E +L+EAQRLE+R YDLEM++ G C Sbjct: 250 YPARQFVADSEKLEVAMLAIENELAERLNALRAEEKLVEAQRLEERTRYDLEMMKELGYC 309 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENY+R++ GR PGE P L +Y PED L+ VDESHVT+PQI GMY GD RK L E Sbjct: 310 SGIENYARHIAGRKPGERPWCLLDYFPEDFLVVVDESHVTLPQIRGMYGGDRSRKTVLVE 369 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ + P I VSATP + EL + G++VEQ+IRPTGL+DP + Sbjct: 370 HGFRLPSALDNRPLRFEEFEEMVPQVICVSATPSAHELMRSGGVVVEQLIRPTGLLDPQI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+ Q++ + I +G + L+ LTKRM+EDL Y + +R +Y+HSE+K+L Sbjct: 430 EVHPVAGQIDHLLARIRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEIKSL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G +VLVG+NLLREGLD+PE LVAILDADKEGFLR TSL+Q GRAA Sbjct: 490 ERMQILRELRAGDIEVLVGVNLLREGLDLPEVALVAILDADKEGFLRDATSLMQIAGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV V+ YAD IT S++ +DET RRR Q E+N+KH I P+S+ + + +V++ + Sbjct: 550 RNVEGLVLFYADKITDSMREVLDETERRRRIQREYNEKHGIEPRSIIKSVDQVLNTTSVA 609 Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + + S+S+ + + +M AA+ ++E+AA +R Sbjct: 610 DAEERYRRKRLGLQKRPELELRGVLDSMSRSDVMLMVAEMNAEMQKAAEQTDYEKAAYLR 669 Query: 788 DEIKRLK 794 DEI L+ Sbjct: 670 DEILMLQ 676 >gi|315926794|gb|EFV06168.1| Excinuclease ABC B subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 657 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKKHNI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKHNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|55379581|ref|YP_137431.1| excinuclease ABC subunit B [Haloarcula marismortui ATCC 43049] gi|74579266|sp|Q5UYC8|UVRB_HALMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|55232306|gb|AAV47725.1| UvrABC system protein B [Haloarcula marismortui ATCC 43049] Length = 686 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/654 (51%), Positives = 441/654 (67%), Gaps = 7/654 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI QL G Q LLGVTGSGKT T++ V+E +Q+P +V+A Sbjct: 19 FRVDAPFDPAGDQPEAIEQLASGYRQGMDRQTLLGVTGSGKTNTVSWVVEEIQQPTLVIA 78 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FP NAVEYFVSYYDYYQPEAYV +TDT+I+K++SIN++IDR+RH Sbjct: 79 HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTFIDKDASINDEIDRLRH 138 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRSLL R+D IVV+SVS IYG+G +Y M + L++G +E+ ELL LV Y+R Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPRNYIDMSLSLEVGQEIERDELLGQLVDLNYERN 198 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +GTFRV GD++EI+P + A RV +G++I+ + + PL G+ ++ Sbjct: 199 DVDFTQGTFRVRGDTLEIYPMYAR-YALRVEFWGDEIDRMLKVDPLEGEVKSEEPAALLH 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY P L A+ I++ L R+ E++G + AQR+E+R T+D+EM++ TG C Sbjct: 258 PAEHYSIPEQRLQRAIDEIEKLLDQRISYFERQGNHVAAQRIEERTTFDIEMMQETGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L+ R GE P TL +Y P+D L VDESH T+PQI G + GD RK +L E Sbjct: 318 GIENYSVHLSDRETGEAPYTLLDYFPDDFLTVVDESHQTLPQIRGQFEGDKSRKESLVEN 377 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP+ DNRPL FEE+ T+ VSATPG +E + +VEQI+RPT LVDP VE Sbjct: 378 GFRLPTAFDNRPLTFEEFEEKTDQTLYVSATPGDYERDHSDQ-VVEQIVRPTHLVDPAVE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I SA QVED+ + I+ + R+L+T LTKRMAEDLTEYL E + V YMH E TLE Sbjct: 437 IASATGQVEDLLERIDDRVDRDERVLVTTLTKRMAEDLTEYLEESGVNVAYMHDETDTLE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IR LRLG DVLVGINLLREGLDIPE LVAILDAD+EGFLRS+T+L+QT+GRAAR Sbjct: 497 RHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +V+LYAD + ++Q AI ET RRR Q ++N+ H P ++++++ E P Sbjct: 557 NVNGEVVLYADERSNAMQSAIQETQRRRRIQQQYNEDHGFEPTTIEKEVGETNLP--GSK 614 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T IS D + + ++ L ++M AADNL FE AA IRD I+ L+ Sbjct: 615 TETGGISSDG---ASDADEATRQIEQLEERMQEAADNLEFELAADIRDRIRELR 665 >gi|148926649|ref|ZP_01810330.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni CG8486] gi|145845168|gb|EDK22263.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni CG8486] Length = 657 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GIENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|194334626|ref|YP_002016486.1| excinuclease ABC subunit B [Prosthecochloris aestuarii DSM 271] gi|194312444|gb|ACF46839.1| excinuclease ABC, B subunit [Prosthecochloris aestuarii DSM 271] Length = 683 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/669 (47%), Positives = 450/669 (67%), Gaps = 14/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++++ Y P GDQP AI L G+ E Q LLGVTGSGKTFTM+ VI +P +V++ Sbjct: 8 YRLESSYEPMGDQPGAIDALSAGVRDGEPCQTLLGVTGSGKTFTMSNVIARAGKPVLVIS 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P D YI K+ INE+I+R+R Sbjct: 68 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLRINEEIERLRL 127 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL R D IVVSSVSCIYG+GS E + I++L+ G ++++ L LV + R Sbjct: 128 RATSALLSGRRDVIVVSSVSCIYGLGSPEDWMAQILELRTGMDMDREAFLQRLVDLHFVR 187 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + G FRV GD I++ P+H ED A RV +G++I+ + F P TG+ I E I Sbjct: 188 DDMELSSGKFRVRGDVIDLVPAHEED-ALRVEFYGSEIDRLQLFNPRTGEIIEEQEYACI 246 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V + L AM I+ EL RL E RL+EA+RLE+R YDLEM++ G C Sbjct: 247 YPARQFVADKARLEAAMLSIENELAGRLNTFRAEDRLVEARRLEERTRYDLEMIKELGYC 306 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS +L+GR GE P L +Y +D ++ +DESHV++PQI GMY GD RK L E Sbjct: 307 SGIENYSSHLSGRKAGERPYCLLDYFQDDYMVVIDESHVSLPQIRGMYAGDRSRKTILVE 366 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ + P I VSATPG +EL + QG++VEQ++RPTGL+DP + Sbjct: 367 HGFRLPSALDNRPLRFEEFEEVVPQMICVSATPGDYELTRSQGVVVEQLVRPTGLLDPEI 426 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R Q++++ +EI +G + L+ +TKRM+EDL ++L + +R RY+HSE+K+L Sbjct: 427 TVRPVSGQIDNLLEEIRQNTAKGFKTLVMTITKRMSEDLHDFLRKAGVRSRYLHSEIKSL 486 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERI+I+R+LR G DVLVG+NLLREGLD+PE LVAILDADK+GFLR SL+Q GRAA Sbjct: 487 ERIQILRELRAGDVDVLVGVNLLREGLDLPEVALVAILDADKQGFLRDARSLMQIAGRAA 546 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV +V+ YAD IT S++ IDET RRR+ Q + N++H I P+S+ + + +V++ + Sbjct: 547 RNVEGRVVFYADRITPSMREVIDETDRRRKVQQQFNEEHGIVPRSIIKSVDQVLNTTSVA 606 Query: 740 DAAT------TNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + ++L +LS ++ + + L+ +M AA+++ +E+AA +R Sbjct: 607 DAEERFRRKRLGLQQKNERLLEGVIDTLSPEELSSMAEDLKCEMQEAAESMEYEKAAWLR 666 Query: 788 DEIKRLKSS 796 DEI +++ + Sbjct: 667 DEISKIEHA 675 >gi|205355522|ref|ZP_03222293.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni CG8421] gi|205346756|gb|EDZ33388.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni CG8421] Length = 657 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|121612747|ref|YP_001000376.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|167005322|ref|ZP_02271080.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|87249413|gb|EAQ72373.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 657 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDIPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEFLFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|283953964|ref|ZP_06371493.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 414] gi|283794569|gb|EFC33309.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 414] Length = 657 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/661 (49%), Positives = 442/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +D+ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSDFKPSPDQEKAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD ++I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIVDIYPAYYEDEVVRLEFFGDELDVMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKTELNERLACFEHENKLVEHQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDESKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T +RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNQRRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA +RDEI +L Sbjct: 597 --LKNEENLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAALRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|283956090|ref|ZP_06373577.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 1336] gi|283792410|gb|EFC31192.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 1336] Length = 657 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPASVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|193212081|ref|YP_001998034.1| excinuclease ABC subunit B [Chlorobaculum parvum NCIB 8327] gi|193085558|gb|ACF10834.1| excinuclease ABC, B subunit [Chlorobaculum parvum NCIB 8327] Length = 684 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/667 (49%), Positives = 444/667 (66%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++ Y P+GDQP+AI L +G+ ++ Q LLGVTGSGKTFT++ VI + RP +V++ Sbjct: 11 FKLESPYGPTGDQPSAIKALTEGVLRGDRWQTLLGVTGSGKTFTVSNVIAQINRPTLVLS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 71 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLKINDEIERLRL 130 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT +LL RND IVVSSVSCIYG+GS E + I++L+ G +++ E L LV Y R Sbjct: 131 RATSALLSGRNDVIVVSSVSCIYGLGSPEDWLAQIIELRQGMEMDRDEFLQMLVSLHYFR 190 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + G FRV GD I++ P H E++A R+ FG++I I F P TG+ I E I Sbjct: 191 DDVDLSPGRFRVRGDVIDLVPGH-EELALRIEFFGSEIYSIQTFDPKTGEIISRDEYAFI 249 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V L TAM I++EL RL L E +L+EAQRLE+R YDLEM++ G C Sbjct: 250 YPARQFVADTEKLETAMLAIEDELAGRLNVLRGEDKLVEAQRLEERTRYDLEMMKELGYC 309 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENY+R++ GR PGE P L +Y PED L+ VDESHVT+PQI GMY GD RK L E Sbjct: 310 SGIENYARHIAGRKPGERPWCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTVLVE 369 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ P + VSATP EL + +G++VEQ+IRPTGL+DP + Sbjct: 370 HGFRLPSALDNRPLRFEEFEEKVPQVLCVSATPAEHELMRSEGVVVEQLIRPTGLLDPQI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+ Q++ + + +G + L+ LTKRM+EDL Y + +R +Y+HSE+K+L Sbjct: 430 EVHPVAGQIDHLLARVRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEIKSL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR G DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 490 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNNKSLMQIAGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV V+ YAD IT S++ IDET RRR Q +N+KH I P+S+ + + +V++ + Sbjct: 550 RNVEGLVLFYADKITASMREVIDETERRRRIQQAYNEKHGIEPRSIIKSVDQVLNTTSVA 609 Query: 740 DAA----------TTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA ++ Q L +LS+ + + + +M AA ++E+AA +R Sbjct: 610 DAEERYRRKRLGLQKRPELELQGLLDTLSRNEVVKMVAEMNTEMQKAAKETDYEKAAYLR 669 Query: 788 DEIKRLK 794 DEI L+ Sbjct: 670 DEILMLE 676 >gi|288799999|ref|ZP_06405458.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 299 str. F0039] gi|288333247|gb|EFC71726.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 299 str. F0039] Length = 678 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/669 (49%), Positives = 466/669 (69%), Gaps = 16/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL GI + + Q+LLGVTGSGKTFT+A I +++P ++++ Sbjct: 3 FKITSKYKPTGDQPEAIKQLTDGILAGDTAQVLLGVTGSGKTFTIANTIANVKKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPKNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINEDIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL R D I+VSSVSCIYG+G + + I+ ++ G+ +++ + L LV Y R Sbjct: 123 SAVSALLSGRQDVIIVSSVSCIYGMGGPSAMGESIINIQQGEQLDRNDFLRKLVDALYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RGTFRV G++I++F ++ D R++ + ++E I E +T ++I + + +I Sbjct: 183 NDIDLTRGTFRVKGETIDVFMAY-SDHILRITWWDEEVESIEELDSVTFKRIASFTSYQI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + +N A+++I+++L ++ E G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANIFVTSKDQVNDAIRHIQDDLTDQIAFFESVGDTIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR+PGE P L ++ P+D LL VDESHVTIPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRSPGERPYCLLDFFPQDFLLVVDESHVTIPQIRAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLP+ DNRPLRFEE++ + I VSATP +ELE+ G+IVEQIIRPTGL+DP + Sbjct: 362 FGFRLPAAFDNRPLRFEEFHEMVNQAIYVSATPADYELEESDGVIVEQIIRPTGLLDPLI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ DEI ++ RIL+T LTKRMAE+LT+YL ++ Y+HS+V TL Sbjct: 422 IVRPSENQIDDLMDEIIECTKREERILVTTLTKRMAEELTDYLINNGVKTSYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ LR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNGLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S+Q IDET RRR Q+++N++H+I PQ +++ I ++ Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETERRRLIQMKYNEEHHITPQQIQKSIKSLLTNDTTN 601 Query: 740 DAATTNISIDAQQLS--------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + T + SI +LS +SK++ + ++ + M AA +L+F +AA+ Sbjct: 602 NNTTKDYSISENELSSNKVMLAADEIVVKMSKEQLRKSIQYTTEMMKQAAKDLDFLQAAQ 661 Query: 786 IRDEIKRLK 794 RDEI +L+ Sbjct: 662 YRDEILKLQ 670 >gi|284925936|gb|ADC28288.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni IA3902] Length = 657 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKKGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|86151710|ref|ZP_01069924.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|218562319|ref|YP_002344098.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124185|ref|YP_004066189.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|14195312|sp|Q9PPM7|UVRB_CAMJE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|85841339|gb|EAQ58587.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|112360025|emb|CAL34817.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315017907|gb|ADT66000.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 657 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|307353384|ref|YP_003894435.1| excinuclease ABC subunit B [Methanoplanus petrolearius DSM 11571] gi|307156617|gb|ADN35997.1| excinuclease ABC, B subunit [Methanoplanus petrolearius DSM 11571] Length = 656 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/657 (52%), Positives = 445/657 (67%), Gaps = 27/657 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P+G QP AI +L +G++ E+ Q LLGVTGSGKTFT+A VIE Q+P +V+A Sbjct: 7 FKLVSDFAPAGSQPEAIKELDEGLNKGERFQTLLGVTGSGKTFTIANVIEYYQKPVLVLA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++MR Sbjct: 67 HNKTLAAQLYNEFKEFFPGNRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRL 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL R D IVV+SVS IYG+G+ E++ + +LK GD +++ +LL LV ++R Sbjct: 127 AATASLLSRTDVIVVASVSAIYGLGNPENFENLGFELKAGDRIKRNDLLMKLVDILFERN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D ++ G FRV GD+I++ P + ++ R+ MFG++IE ISE TG + ++ +Y Sbjct: 187 DTELMPGRFRVRGDTIDLIPGYFNNI-IRIEMFGDEIERISEVDKNTGDILEPMKYFFVY 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYV P A++ IK EL+ RL L LEA RL+QR YD+EM+E TGSC+ Sbjct: 246 PARHYVIPEEEKAAAIEAIKAELEERLPLLGP----LEAHRLKQRTLYDMEMIEETGSCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ R GE P L +Y P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 302 GIENYSRHFDRRAEGEKPFCLLDYFPDDFLLVVDESHQTLPQVRGMYNGDRSRKIPLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL F E+ I VSATPG +E E + VEQIIRPTGLVDP VE Sbjct: 362 GFRLPSAFDNRPLVFNEFEEYMRHVIFVSATPGIYEEEHSLNV-VEQIIRPTGLVDPLVE 420 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR R Q+ DV +EI ++G R+L+T LTK++AE+LTE+L + I+ RY+HS++KT+E Sbjct: 421 IRPVRGQMADVLEEIRKTTEKGDRVLITTLTKKLAEELTEFLASKKIKTRYLHSDIKTIE 480 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR SLIQ IGRAAR Sbjct: 481 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSRSLIQIIGRAAR 540 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDPI 736 N NS V+LYAD +T SI+ A+ ET RRR QLE NK H I P ++K EK +++ D Sbjct: 541 NANSYVVLYADNMTDSIKKAVSETERRRNMQLEFNKAHGIVPVTIKKPVREKEIDIKDIK 600 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + A N+ I+ L M AA+ L+FE A +RD I++L Sbjct: 601 HIPKAEIPNLIIE-----------------LEADMDAAAEALDFERAIVLRDRIRQL 640 >gi|57236983|ref|YP_178784.1| excinuclease ABC subunit B [Campylobacter jejuni RM1221] gi|81819538|sp|Q5HVA1|UVRB_CAMJR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|57165787|gb|AAW34566.1| excinuclease ABC, B subunit [Campylobacter jejuni RM1221] gi|315058089|gb|ADT72418.1| Excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni S3] Length = 657 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLAKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|194337381|ref|YP_002019175.1| excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194309858|gb|ACF44558.1| excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 698 Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust. Identities = 325/669 (48%), Positives = 441/669 (65%), Gaps = 14/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AI L G+ S Q LLGVTGSGKTFT++ VI RP +VM+ Sbjct: 23 YKIVSPYSPAGDQPKAIEALCDGVRSGNPYQTLLGVTGSGKTFTISNVIARFDRPVLVMS 82 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEYF+SYYD+YQPEAY+P D YI K+ IN++I+R+R Sbjct: 83 HNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLRL 142 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSCIYG+GS E + IV+L+ G ++ L L+ Y R Sbjct: 143 KATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIVELRSGMEKDRDLFLKELISLHYIR 202 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ G FRV GD I++ P+H E++A R+ FG++IE I F +G+ + + I Sbjct: 203 DDVQPSSGKFRVRGDIIDLVPAH-EELALRIEFFGSEIESIQTFDIHSGEVLGVEDYAFI 261 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +V L AM I+ EL RL E RLLEA+R+E+R YDLEM++ G C Sbjct: 262 YPARQFVADEEKLKVAMLAIENELAERLNYFRSENRLLEARRIEERTRYDLEMMKELGYC 321 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L+ R PGE P L +Y P D L+ +DESHVT+PQI GMY GD RK L E Sbjct: 322 SGIENYSRHLSARPPGERPCCLLDYFPSDFLVIIDESHVTLPQIRGMYGGDRSRKTILVE 381 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS +DNRPLRFEE+ + I VSATP EL + G++VEQ++RPTGL+DPPV Sbjct: 382 HGFRLPSALDNRPLRFEEFEEMASQVICVSATPSEHELLRSGGVVVEQLVRPTGLLDPPV 441 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R Q++++ EI + +G ++L+ LTKRM+EDL ++ + IR RY+HSE+K+L Sbjct: 442 EVRPVTGQIDNLLAEIRIHTAKGNKVLVMTLTKRMSEDLHDFFRKTGIRSRYLHSEIKSL 501 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+R+LR+G DVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL+Q GRAA Sbjct: 502 ERMQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 561 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ V+LYAD +T+SI+ +DET RRR Q +N++H I P+S+ + + +++D + Sbjct: 562 RNVDGLVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGITPRSIIKSVDQILDTTGVA 621 Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 DA + +L+ + G A LR +M AA + +E+AA +R Sbjct: 622 DAEERYRRKRFGLEPKPERVLSGHIDTLTPEAGYALAAELRLEMQEAAVQMEYEKAAYLR 681 Query: 788 DEIKRLKSS 796 DEI +L+ + Sbjct: 682 DEITKLEQA 690 >gi|86149808|ref|ZP_01068037.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839626|gb|EAQ56886.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 657 Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust. Identities = 330/661 (49%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 NATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSATSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|313617223|gb|EFR89711.1| excinuclease ABC subunit B [Listeria innocua FSL S4-378] Length = 587 Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust. Identities = 320/589 (54%), Positives = 425/589 (72%), Gaps = 5/589 (0%) Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267 QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RHSAT +L Sbjct: 1 QLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRHSATAALF 60 Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R DI RG Sbjct: 61 ERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQRG 120 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I + E + I+ SH+VT Sbjct: 121 RFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIFPASHFVT 180 Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447 + A+ IK EL+ RL L E +LLEAQRLEQR YDLEM+E G C IENYSR Sbjct: 181 RPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSR 240 Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507 +L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD RK L ++GFRLPS Sbjct: 241 HLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSA 300 Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 +DNRPLR EE+ + +SATPG +ELE +I EQIIRPTGL+DP VEIR + Q Sbjct: 301 LDNRPLRLEEFEKHINQIMFISATPGPYELEXXPDVI-EQIIRPTGLLDPIVEIRPIQGQ 359 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 ++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLERIEIIRD Sbjct: 360 IDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRD 419 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAARN N +VI Sbjct: 420 LRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVI 479 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 +YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I +I AA + Sbjct: 480 MYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAAT---SAADEREA 536 Query: 748 IDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 537 VKQHDLSKMSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 585 >gi|307747592|gb|ADN90862.1| UvrABC system protein B [Campylobacter jejuni subsp. jejuni M1] Length = 657 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 330/661 (49%), Positives = 440/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 STTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|86153333|ref|ZP_01071537.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843059|gb|EAQ60270.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 657 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 330/661 (49%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y + I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLKLGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|153952519|ref|YP_001398373.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. doylei 269.97] gi|152939965|gb|ABS44706.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 657 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 330/661 (49%), Positives = 441/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A++ IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGEARLKQAIRDIKIELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|62185531|ref|YP_220316.1| excinuclease ABC subunit B [Chlamydophila abortus S26/3] gi|81312322|sp|Q5L4S6|UVRB_CHLAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|62148598|emb|CAH64370.1| UvrABC system protein B UvrB [Chlamydophila abortus S26/3] Length = 656 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 334/656 (50%), Positives = 435/656 (66%), Gaps = 11/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP AIA+L +G+ +R Q+LLG TGSGKTFT+A V+ + RP +V+A Sbjct: 3 FELRAAFSPCGDQPEAIAKLTQGVRNRTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK IN +ID++R Sbjct: 63 HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++L +G + L S LVK Y+ Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELTVGTEYPRALLASQLVKMHYQAS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R TFR G I+IFP++ ++A R+ F + + I PLT +V ++ +Y Sbjct: 183 SVP-QRSTFRERGSVIDIFPAYESELAIRLEFFNDTLTSIDYSDPLTMMPKESVTSVILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ RL + R +E RL R T+D+EM++ TG C+ Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 299 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ T PG PP L +Y PED LL +DESH T+PQI MYRGDF RK +L EY Sbjct: 300 GIENYSRHFTNTPPGAPPTCLLDYFPEDFLLVIDESHQTLPQIRAMYRGDFSRKQSLVEY 359 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG EL + QG IVEQI+RPTG+ DP E Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQILRPTGIPDPIPE 419 Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 IR A QV+D+ +EI L+ Q +IL+ +TK++AED+ +L E +I Y+HS ++T Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQE-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ DLRLG DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRA Sbjct: 479 AERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ KVI YAD T SI+ + ET RRR QLE+NK +NI P+ + + I +PI Sbjct: 539 ARNVDGKVIFYADHKTLSIEQTLKETERRRHIQLEYNKANNITPKPIIKAIFA--NPIPQ 596 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 D Q LS ++ + +K M AA+ F+EAA+ RD++K K Sbjct: 597 GGKKAVQ---DTPQKPLSTQELEKLIKKYENLMLQAANAFRFDEAAQYRDKMKAAK 649 >gi|212550673|ref|YP_002308990.1| excinuclease ABC subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548911|dbj|BAG83579.1| excinuclease ABC subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 672 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 311/663 (46%), Positives = 441/663 (66%), Gaps = 11/663 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+ + Q LLGVTGSGKTFTMA VI + PA++++ Sbjct: 3 FELVSNFRPAGDQPQAIHSLVSRVKQGVSYQTLLGVTGSGKTFTMANVIAQIGHPALILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+ +FK FFPHNAVEYFVSYYD+YQPEAY+P ++TYIEK+ IN +I+RMR Sbjct: 63 HNKTLAAQLFKDFKEFFPHNAVEYFVSYYDFYQPEAYLPISNTYIEKDFGINAEIERMRI 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 ++ +LL R D ++VSS+SC+YG+G+ E Y + IV +K G ++ Q L LV Y R Sbjct: 123 ASVSALLSGRQDVVIVSSISCLYGMGNPEDYRENIVSIKRGMTMLQTIFLRKLVTGMYSR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 I G FRV GD++++FP++ D+A RV +G++IE+I F P+ GQ + E I Sbjct: 183 NQIDFTNGRFRVMGDTVDVFPAY-SDMALRVIFYGDEIEKICTFNPVNGQVLEIFEQYDI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + T + + A++ I+ +L + L G++ EA+RL +R+ +D+EM+ G C Sbjct: 242 YPAGLFTTTQDRVVVAVRQIEADLNQHICFLNGLGKIQEARRLHERVRFDIEMIRQLGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L +Y P + L+ +DESHVTIPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQQGDRPFCLIDYFPGNFLMIIDESHVTIPQIRAMYEGDQSRKMNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL F+E+ + P I +SATP +EL C+GII+EQ++RPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLTFDEFESITPQKIFISATPAEYELRMCEGIIIEQVVRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+RS Q++D+ +EI ++ R L+T LTKRMAE+L Y NI+ Y+HS++K L Sbjct: 422 EVRSTLHQIDDLMEEIRQRLEKNERTLVTTLTKRMAEELNSYFVNLNIQAAYIHSDIKAL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ II + R G FDVL+G+NLLREGLD+PE LVA+LDADKEGFLRS SL Q GRAA Sbjct: 482 ERVGIIDEFRRGVFDVLIGVNLLREGLDLPEVSLVAVLDADKEGFLRSYRSLTQIAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KVI YAD +TKS++ ID+T +RREKQL +NK++ I P+ V++ + ++L Sbjct: 542 RNINGKVIFYADKMTKSMRNTIDDTNKRREKQLLYNKRNRIIPKQVQKSVST--SSLVLH 599 Query: 740 DAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 NI ++ + ++S + + + +RK M A+ F EAA RDE+ + Sbjct: 600 TNTKLNIKFAFNIETVFKEASTMSHIQLEKAINQIRKMMLFASKQFEFLEAAHYRDELIK 659 Query: 793 LKS 795 L++ Sbjct: 660 LEN 662 >gi|89071985|ref|ZP_01158581.1| excinuclease ABC subunit B [Photobacterium sp. SKA34] gi|89052086|gb|EAR57537.1| excinuclease ABC subunit B [Photobacterium sp. SKA34] Length = 656 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 315/621 (50%), Positives = 433/621 (69%), Gaps = 2/621 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP A+A+L+ I Q L GVTGSGKTFTMA +I +QRP +++A Sbjct: 6 FILHSAYPPSGDQPEALARLIGNIQDGVTHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S++N+Q++R+R Sbjct: 66 HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAVNQQLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D IVV+SVS IYG+G Y + + L +G ++++++ + LV QY R Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPAQYRAVQIPLSVGMTIDREDFIQRLVALQYSRC 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + I R TFRV G+ +I+P+ E + RV MF + IE++ P+TG+ + +++ + Sbjct: 186 ERTIERATFRVHGEIFDIYPADSESKSVRVVMFDDTIEQLQWLDPITGKVMGDIDHYFVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + L A I++EL+MR+ EL E R++EA RL +R T+D+EM++ G C Sbjct: 246 PKTLYAASKDKLLKASIEIQKELEMRVAELNNENRIVEAARLYERTTHDIEMMQQLGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS YL R+P PP TL +Y+PED LLF+DESHV IPQIS MYR D RK TL +Y Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPEDGLLFIDESHVMIPQISAMYRSDVSRKETLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F+E+ ++P T+ VSATPG +EL++ ++EQIIRPTGL+DP VE Sbjct: 366 GFRLPSAKNNRPLMFKEFEQIKPQTVFVSATPGDYELKKSDQHVIEQIIRPTGLLDPIVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQ +D+ EI+ Q+ R+L+T LTK+ AE L E + E+ I+V Y+HSEVKT + Sbjct: 426 VRPLATQTDDLLKEISERTQKDERVLVTTLTKKSAEALYELMSEQGIKVSYIHSEVKTEQ 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR G FDVL+GINLLREGLDIPE LVA+L+AD GFLRS +LIQ IGRAAR Sbjct: 486 RVEIIDDLRAGTFDVLIGINLLREGLDIPEASLVAVLNADHAGFLRSTQALIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--IMEVIDPILL 738 N N K ILYAD IT ++Q A+ E+ +RRE+Q+E+NK HNI P S + K ++ +P Sbjct: 546 NANGKAILYADKITPAMQQAMTESQQRRERQVEYNKAHNITPASSQRKKAAIDNNEPTQH 605 Query: 739 EDAATTNISIDAQQLSLSKKK 759 +N+S QQ++ ++K+ Sbjct: 606 SIEFCSNLSELCQQITATEKE 626 >gi|157414952|ref|YP_001482208.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 81116] gi|157385916|gb|ABV52231.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 81116] Length = 657 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 330/661 (49%), Positives = 439/661 (66%), Gaps = 14/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ + + PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSKFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 STTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NKK+NI P SVK I E Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L + I ++L +A L K LRKQM AA L FE+AA IRDEI +L Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654 Query: 794 K 794 + Sbjct: 655 R 655 >gi|291515122|emb|CBK64332.1| Excinuclease ABC subunit B [Alistipes shahii WAL 8301] Length = 690 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 323/673 (47%), Positives = 443/673 (65%), Gaps = 22/673 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI QL+ I K LLGVTGSGKTFT+A VI + RP +V++ Sbjct: 3 FKLVSDYAPMGDQPEAIGQLVSSIEHGSKHNTLLGVTGSGKTFTVANVIARLNRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+NFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ IN +I++MR Sbjct: 63 HNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLQINAEIEKMRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +LL R D IVVSSVSC+YG G+ + + +K+G V K L LV+ Y R Sbjct: 123 GTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAINIKVGQVVSYKHFLYKLVEALYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + + TFRV GD+++I + E + +RV F N++E I P+TGQ+I ++++I Sbjct: 183 TERELEPATFRVNGDTVDIMAAFGEFGNQCFRVMFFDNEVEAIQSIDPVTGQRIASLDSI 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +YA + +VT + +N A++ I +L ++ E+ GR +EAQR++QR+ YDLEM++ G Sbjct: 243 TLYATNLFVTTKERINAAVQQIYLDLGKQIEFFERAGRPMEAQRIKQRVEYDLEMIKELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR G P L +Y P+D L+ VDESHVT+PQ+ M+ GD RK L Sbjct: 303 YCPGIENYSRYFDGRAAGTRPFCLIDYFPKDYLMVVDESHVTLPQVHAMFGGDRARKENL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ DNRPL F E+ L+ T+I VSATP +EL + +G+IVEQ+IRPTGLVDP Sbjct: 363 VEYGFRLPAAKDNRPLTFSEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+E+R Q++D+ EI+ + ++L+T +TKRMAE+L++Y +R RY+HS+V Sbjct: 423 PLEVRVTLNQIDDLIGEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI+I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL Q GR Sbjct: 483 TLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE---------- 727 AAR+ VILYADT T S++ AI+++ RRREKQ+ +N +H + P+ ++ Sbjct: 543 AARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHEMLPRQAQKSGSGQSALLA 602 Query: 728 ------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 ++ PI + A + D Q+ + + A + R++M AA +LNF Sbjct: 603 GRVDTSEVNMTAYPIAEDHYAA---AADVQKSYTASENIDALIDKAREEMERAAKSLNFL 659 Query: 782 EAARIRDEIKRLK 794 AA+ RD + L+ Sbjct: 660 AAAKFRDRMYELQ 672 >gi|57167692|ref|ZP_00366832.1| excinuclease ABC, B subunit [Campylobacter coli RM2228] gi|305433199|ref|ZP_07402355.1| excision endonuclease subunit UvrB [Campylobacter coli JV20] gi|57020814|gb|EAL57478.1| excinuclease ABC, B subunit [Campylobacter coli RM2228] gi|304443900|gb|EFM36557.1| excision endonuclease subunit UvrB [Campylobacter coli JV20] Length = 657 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 327/668 (48%), Positives = 437/668 (65%), Gaps = 28/668 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +D+ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++ + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELDMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL F+E+ + +SATP ELE + I QI+RPTGL+DP Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKDCQFLFISATPAPLELELSKENIFHQIMRPTGLLDP 421 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS++ Sbjct: 422 LIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDID 481 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT+GR Sbjct: 482 AIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 541 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN KV+L+ ITKS+Q A+D T RR+ Q +N+KHNI P SVK I E + Sbjct: 542 AARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLK--- 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786 + + L +KGK +K LRKQM AA L FE+AA + Sbjct: 599 -----------NEENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATL 647 Query: 787 RDEIKRLK 794 RDEI +LK Sbjct: 648 RDEINKLK 655 >gi|222099925|ref|YP_002534493.1| UvrABC system protein B [Thermotoga neapolitana DSM 4359] gi|254764916|sp|B9K844|UVRB_THENN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|221572315|gb|ACM23127.1| UvrABC system protein B [Thermotoga neapolitana DSM 4359] Length = 664 Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust. Identities = 330/663 (49%), Positives = 457/663 (68%), Gaps = 14/663 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G++ + Q LLGVTGSGKTFTMA VI + RPA+V++ Sbjct: 2 FKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVIS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P D YIEK + IN+ I RMR Sbjct: 62 PNKTLAAQLYQEFKTFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S +S+ R D IVV+SVSCIY G + +M ++L +G+ ++ EL L K Y+R Sbjct: 122 STLKSVRTRRDVIVVASVSCIYATGDPNDFDRMNIKLSVGERLDVFELAEKLAKIGYQRT 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G FR+ GD++EI+P++ +D RV FG++I+ IS + ++ + IY Sbjct: 182 EDVSLSGCFRIRGDTLEIYPTY-QDEGIRVEFFGDEIDAISLIDRFNRTTLERLDKVIIY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VT L A++ IKEEL+ RL EL+K+G++LE +RL+QR D+E+LET G C Sbjct: 241 PAVEFVTTEEKLRRAIESIKEELRERLAELKKQGKVLEYERLKQRTLNDIELLETMGYCP 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y +D ++F+DESH+T+PQ+ MY GD RK L EY Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDDDFVVFIDESHITVPQLRAMYNGDRSRKKNLVEY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ + VSATPG +EL + + VEQIIRPTGLVDP VE Sbjct: 361 GFRLPSAYDNRPLTFEEFLKKVGQIVFVSATPGDFELSVSEQV-VEQIIRPTGLVDPEVE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R R QV+D+ +EI Q+G R L+TVLTK+ AE L+E+L E I+ Y+HSE+ +E Sbjct: 420 VRPTRGQVDDLINEIVKVKQRGERALVTVLTKKTAELLSEHLTELGIKSLYLHSELDAIE 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E+++ LR G DV+VG+NLLREGLD+PE LVAI+DAD EGFLRS+T+LIQ IGR AR Sbjct: 480 RVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADTEGFLRSETTLIQIIGRTAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPILLE 739 NVN KVI+YAD IT +++ AI+ET RRR QLE+NKKH I P+S+ + + +EV + +++ Sbjct: 540 NVNGKVIMYADRITNAMKRAIEETNRRRRIQLEYNKKHGITPRSIVKPLEIEVFEQFMVK 599 Query: 740 DA------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + NI + LSL + ++ L ++M+ AA L +E+AA +RDE+ R+ Sbjct: 600 EEPAEYGDTIKNIFSMKESLSLEE-----YVALLEEEMYRAASELRYEDAAALRDELFRV 654 Query: 794 KSS 796 K + Sbjct: 655 KET 657 >gi|218130938|ref|ZP_03459742.1| hypothetical protein BACEGG_02540 [Bacteroides eggerthii DSM 20697] gi|217987282|gb|EEC53613.1| hypothetical protein BACEGG_02540 [Bacteroides eggerthii DSM 20697] Length = 718 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 334/695 (48%), Positives = 473/695 (68%), Gaps = 25/695 (3%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 I+ P S+ ++ ++ F++ + YHP+GDQP AIAQL +G+ Q LLGVTGSGK Sbjct: 19 IFIPF--LSLPDNPDEMNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGK 76 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFT+A VI + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P + Sbjct: 77 TFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSS 136 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 DTYIEK+ +IN++ID++R +AT +LL R D +VVSSVSCIYG+G+ + +++++ G Sbjct: 137 DTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQG 196 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + L LV Y R DI + RG FRV GD+++I+ ++ +++ R+ +G++I+ I Sbjct: 197 KNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSI 255 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 E P++G I + KIY + ++T + A+ I+++L ++ E EGR EA+ Sbjct: 256 EEVDPVSGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAK 315 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RL++R+TYD+EM+ G C IENYSRY GR G P L ++ PED L+ +DESHV++ Sbjct: 316 RLQERVTYDMEMMRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSV 375 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQI MY GD RK L EYGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q Sbjct: 376 PQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQS 435 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 +GI+VEQ+IRPTGL+DP +E+R + Q++D+ +EI L ++ R L+T LTKRMAE+LTE Sbjct: 436 EGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTE 495 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YL N++ Y+HS+V TLER+ I+ DLR G++DVLVG+NLLREGLD+PE LVAILDAD Sbjct: 496 YLLNNNVKCNYIHSDVDTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDAD 555 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS SL QT GRAARNVN VI+YAD IT+S+QL IDET RRREKQL++N++H I Sbjct: 556 KEGFLRSHRSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGI 615 Query: 721 NPQSV---------------------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759 PQ + KEK+ +E +T+ ++ D +S+ + Sbjct: 616 TPQQIKKAKSLNVFAGTEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQ 675 Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ +K M AA L+F EAA+ RDE+ +++ Sbjct: 676 LEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 710 >gi|307565585|ref|ZP_07628065.1| excinuclease ABC, B subunit [Prevotella amnii CRIS 21A-A] gi|307345744|gb|EFN91101.1| excinuclease ABC, B subunit [Prevotella amnii CRIS 21A-A] Length = 681 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 324/675 (48%), Positives = 467/675 (69%), Gaps = 23/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI L +G+ E Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSTYKPTGDQPEAIRALTEGLKRGEHSQVLLGVTGSGKTFTVANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPHNAVEYYVSYYDYYQPEAYIPTTDTYIEKDLAINDKIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D I+VSSVSCIYG+G + + ++ +K G +++ L LV Y R Sbjct: 123 SAVSSLLSGRKDVIIVSSVSCIYGMGGPAAMQENVIHIKKGQKMDRNYFLRQLVSSLYLR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD+++I ++ ++V R++ + ++I+ I E + ++ + +T +I Sbjct: 183 NDMDLQRGYFRVKGDTVDIAMAYSDNV-LRITWWDDEIDSIEEVDSIAFHRLSSFDTYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A+ I+++L M++ ++ G ++A+R+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTQQAISKIQDDLMMQIDHFKQLGENIKAKRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D LL +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRTAGQRPYCLLDFFPKDYLLVIDESHVSVPQISAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL+FEE+ + I VSATP +EL++ G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLKFEEFKSMIHQVIYVSATPADFELKEADGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI + A++ RIL+T LTKRMAE+LTEYL ++R Y+HS+V +L Sbjct: 422 DVRPSENQIDDLMNEILIRAERQERILVTTLTKRMAEELTEYLLNHDVRTAYIHSDVASL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++II DLR G +DVLVG+NLLREGLDIPE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIINDLRAGLYDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--- 736 RN+N KVI+YADTIT+S+Q IDET RRR KQL++N++HNI P + + I +++ P Sbjct: 542 RNINGKVIMYADTITESMQKTIDETMRRRIKQLKYNEEHNITPAQIVKTIKDIL-PTNKE 600 Query: 737 -----------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 +ED + + D S+SK++ + +K+ + M AA NL+ Sbjct: 601 GDNNFKNTTNKTINKKPHIEDIKSDTFASDPIIKSMSKEQLEKSIKNTTELMKQAAKNLD 660 Query: 780 FEEAARIRDEIKRLK 794 F +AA+ RDEI RL+ Sbjct: 661 FLQAAQYRDEILRLQ 675 >gi|317476249|ref|ZP_07935500.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA] gi|316907660|gb|EFV29363.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA] Length = 718 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 334/695 (48%), Positives = 473/695 (68%), Gaps = 25/695 (3%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 I+ P S+ ++ ++ F++ + YHP+GDQP AIAQL +G+ Q LLGVTGSGK Sbjct: 19 IFIPF--LSLPDNPDEMNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGK 76 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFT+A VI + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P + Sbjct: 77 TFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSS 136 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 DTYIEK+ +IN++ID++R +AT +LL R D +VVSSVSCIYG+G+ + +++++ G Sbjct: 137 DTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQG 196 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + L LV Y R DI + RG FRV GD+++I+ ++ +++ R+ +G++I+ I Sbjct: 197 KNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSI 255 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 E P++G I + KIY + ++T + A+ I+++L ++ E EGR EA+ Sbjct: 256 EEVDPVSGVMIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAK 315 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RL++R+TYD+EM+ G C IENYSRY GR G P L ++ PED L+ +DESHV++ Sbjct: 316 RLQERVTYDMEMMRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSV 375 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQI MY GD RK L EYGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q Sbjct: 376 PQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQS 435 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 +GI+VEQ+IRPTGL+DP +E+R + Q++D+ +EI L ++ R L+T LTKRMAE+LTE Sbjct: 436 EGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTE 495 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YL N++ Y+HS+V TLER+ I+ DLR G++DVLVG+NLLREGLD+PE LVAILDAD Sbjct: 496 YLLNNNVKCNYIHSDVDTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDAD 555 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS SL QT GRAARNVN VI+YAD IT+S+QL IDET RRREKQL++N++H I Sbjct: 556 KEGFLRSHRSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGI 615 Query: 721 NPQSV---------------------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759 PQ + KEK+ +E +T+ ++ D +S+ + Sbjct: 616 TPQQIKKAKSLNVFAGTEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQ 675 Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ +K M AA L+F EAA+ RDE+ +++ Sbjct: 676 LEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 710 >gi|88596906|ref|ZP_01100142.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|88190595|gb|EAQ94568.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni 84-25] Length = 657 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 327/668 (48%), Positives = 438/668 (65%), Gaps = 28/668 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGEARLKQAIKDIKTELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLPS +DNRPL F+E+ + VSATP ELE + I QI+RPTGL+DP Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDP 421 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS++ Sbjct: 422 LIELKDSDNQVEILFDEAKKIIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDID 481 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT+GR Sbjct: 482 AIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 541 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNVN KV+L+ ITKS+Q A+D T RR+ Q +N+KHNI P SVK I E + Sbjct: 542 AARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLK--- 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786 + + L +KGK +K LRKQM AA L FE+AA + Sbjct: 599 -----------NEENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATL 647 Query: 787 RDEIKRLK 794 RDEI +L+ Sbjct: 648 RDEINKLR 655 >gi|283768498|ref|ZP_06341410.1| excinuclease ABC, B subunit [Bulleidia extructa W1219] gi|283104890|gb|EFC06262.1| excinuclease ABC, B subunit [Bulleidia extructa W1219] Length = 660 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 315/655 (48%), Positives = 439/655 (67%), Gaps = 3/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L+KG+ S +K Q+L G TG+GKTFTMA +I + RP ++ + Sbjct: 6 FELVSTFKPTGDQPKAIEELVKGVLSGKKEQVLQGATGTGKTFTMANIIAKVNRPTLIFS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FP+N VEYF+S +DYYQPEAYV + D YIEK ++IN+++D R Sbjct: 66 HNKTLAGQLYSEFKELFPYNRVEYFISNFDYYQPEAYVAQRDMYIEKTAAINDELDMFRE 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S SLLER D IVV+SV+CIY + Y M +++G+S + LL LV+ QY R Sbjct: 126 STINSLLERRDTIVVASVACIYAASDPKQYKDMFFTIRVGESYNRNALLRRLVEMQYGRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ +RG+ RV GD I++ PS + R+ +FG++++ I+E P TG + + I+ Sbjct: 186 DVDQVRGSMRVRGDVIDLTPSFTDQFNIRIELFGDEVDRITEVDPTTGTTLNAYQFYNIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y + ++ A I+ EL+ RL +K +LLE +RLEQR +D+E L G Sbjct: 246 PASGYARNKESILRACDAIEAELEERLRYFKKHDKLLEYERLEQRTRFDIESLRENGYVS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS ++ R G+ P LF+Y PE+ L+ VDESHV++PQI GMY GD RK TL +Y Sbjct: 306 GIENYSFHIDHRKQGQRPWNLFDYFPENFLIMVDESHVSLPQIRGMYNGDHSRKQTLVDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS ++NRP++++E+ + P I SATPG +ELE+ +VEQIIRPTGL+DP VE Sbjct: 366 GFRLPSALENRPMKWDEFEAMIPQVIYCSATPGDYELEKVHNHVVEQIIRPTGLLDPVVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + Q++D+ ++ Q+ ++L+T LT M+EDLT YL ER +V Y+H E T+E Sbjct: 426 VRPTKGQIDDICIALDERIQKKEKVLITTLTVHMSEDLTSYLKERGYQVSYIHHETNTIE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +II DLR+GK+DV+VGINLLREGLDIPE L+ ILDADKEGFLRSK SLIQ IGRAAR Sbjct: 486 RSQIIHDLRIGKYDVVVGINLLREGLDIPEVSLICILDADKEGFLRSKRSLIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N N V +Y DTIT S++ AI+ET RRR Q +NK+H+I P++V++ I +VI ++ Sbjct: 546 NANGHVYMYGDTITDSMKEAIEETNRRRYIQETYNKEHHIVPKTVQKSIGDVIRGKETQE 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A+ I A+ +SK+ + L +M AA NLNFE AA +RD + LK+ Sbjct: 606 MASRYIRKKAK---MSKQDTATLITHLEAEMKEAAANLNFERAAELRDMVLELKA 657 >gi|124485733|ref|YP_001030349.1| excinuclease ABC subunit B [Methanocorpusculum labreanum Z] gi|124363274|gb|ABN07082.1| Excinuclease ABC subunit B [Methanocorpusculum labreanum Z] Length = 644 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 329/662 (49%), Positives = 443/662 (66%), Gaps = 29/662 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q+ Y P G QP AI +L +G+ E+ Q LLGVTGSGKTFT+A VI+ +QRP +V+A Sbjct: 5 FSLQSTYSPKGSQPEAIEELTEGLLDGEQFQTLLGVTGSGKTFTIANVIQNVQRPTLVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+EFK+FFP+N VEYF+SYYDYYQPE+Y+ + D YIEK++SIN +I+ MR Sbjct: 65 HNKTLAAQLYNEFKDFFPNNHVEYFISYYDYYQPESYIAKKDQYIEKDASINPKIEMMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +AT S+L D IVV+SVSCIYG+G+ E++ + +++ G + ++ELL L+ ++R Sbjct: 125 AATASILSHRDTIVVASVSCIYGLGNPENFQNLGFEVRRGQKITRRELLERLLSILFERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI ++ G FRV GD++++ P + ++ R+ +FG+ I+ ISE TG++ +E IY Sbjct: 185 DIELMPGRFRVKGDTVDLIPGYFNNI-IRIELFGDTIDRISEIDKTTGKEKERMEYFFIY 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL--LEAQRLEQRITYDLEMLETTGS 438 H+VTP A+ I+ EL+ E+ E RL L A RL QR YDLEM+E TGS Sbjct: 244 PARHFVTPESEKQAAIDSIRGELE----EVLAENRLDDLAAHRLRQRTQYDLEMIEETGS 299 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ IENYSR+ R GE P L +Y P+D L+ +DESH ++PQ+ GMY GD RK +L Sbjct: 300 CKGIENYSRHFDRRAAGEKPYCLLDYFPDDFLMVIDESHQSLPQVRGMYNGDHSRKQSLV 359 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 EYGFRLPS DNRPL+F E+ I VSATPG +E + II EQIIRPTGLVDP Sbjct: 360 EYGFRLPSAFDNRPLKFVEFEKYLKQVIFVSATPGDYERKYSSQII-EQIIRPTGLVDPV 418 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+R Q +D+ EI+ +G R L+T LTK++AE+LTEYL + I+ RY+HSE++T Sbjct: 419 VEVRPITGQTDDLLREISAVIGRGDRALVTTLTKKLAEELTEYLAGQGIKTRYLHSEIQT 478 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 LER E+IR LRLG FDVLVGINLLREGLDIPE G + ILDADKEGFLR SLIQ IGRA Sbjct: 479 LERTELIRQLRLGMFDVLVGINLLREGLDIPEIGFIGILDADKEGFLRDARSLIQIIGRA 538 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVID 734 ARN +S V+LYAD +T S++ A+ ET RRRE Q+ N +H I P ++K EK +++ D Sbjct: 539 ARNSDSHVVLYADKMTDSMREALAETARRREMQMAFNTEHGITPVTIKKPVREKEVDIKD 598 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L + N+ I+ L +M+ AA L+FE A ++RD +K L+ Sbjct: 599 IRHLPKSEIPNLIIE-----------------LEAEMNAAAAALDFERAIQLRDRVKELR 641 Query: 795 SS 796 Sbjct: 642 GG 643 >gi|83319947|ref|YP_424722.1| excinuclease ABC subunit B [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283833|gb|ABC01765.1| excinuclease ABC, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 665 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 324/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ T Y PSGDQ AI +L KGI +K Q+LLG TG+GKTFT+A +I + A+V+A Sbjct: 8 YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FP N VEYFVS +D++QPEAY+P D YI+K+S N ++D MR Sbjct: 68 HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +LL RND IVV+SV+ ++ + + YS ++LK+G +++ ELL+ LV+ Y R Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI G+F GD I+I P + ++ +R+S+F ++IE I +T + N+ T+ I+ Sbjct: 188 DIENQLGSFSAKGDVIKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+TP+ L T I+ EL RL EL+ E +LLEAQRLEQR YDLE LE G C Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L R+ G+ P L +Y D + VDESH+T+PQI GMY D RK TL EY Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I SATPG +EL+ +V+QIIRPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ +EI+L Q R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+ DLR G +DV+VG+NLLREGLD+PE LV ILDADK+GFLR+ SLIQTIGR AR Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I+YADT+++++ AI ET RRR Q E NKKHNI P+++ + I E IL E Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISE---SILSEQ 604 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + K + + + +LR++M AA L+FE AA +RD I L++ Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELEN 660 >gi|315609009|ref|ZP_07883981.1| excision endonuclease subunit UvrB [Prevotella buccae ATCC 33574] gi|315249389|gb|EFU29406.1| excision endonuclease subunit UvrB [Prevotella buccae ATCC 33574] Length = 680 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 326/673 (48%), Positives = 461/673 (68%), Gaps = 20/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL GI Q+LLGVTGSGKTFT+A VI+ +++P ++++ Sbjct: 3 FELTSKYKPTGDQPEAIRQLTDGIKDGMPAQVLLGVTGSGKTFTVANVIQNVEKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R Sbjct: 63 HNKTLAAQLYQEMKGFFPRNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL R D IVVSSVSCIYG+G + Q +++LK G+++++ E L LV Y R Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQQSVIKLKKGETLDRNEFLRRLVDALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD++++F ++ ++V RV+ + ++I+ I E T ++ + E+ ++ Sbjct: 183 NDIDLQRGCFRVKGDTVDVFMAYSDNV-LRVTWWDDEIDAIEEVDAETFHRVESFESYEL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLVKQVDYFNEIGDTIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR GE P L ++ P+D LL VDESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+F+E+ L TI VSATP +EL + +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFDEFLSLLHQTIYVSATPADFELREAEGVVVEQIIRPTGLLDPQI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ DEI + + R+L+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 DVRPSENQIDDLLDEILTRSHRNERVLVTTLTKRMAEELTEYLLNNNVRANYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S+Q IDET RRR QL++N++H I PQ + + I + E Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHGITPQQIVKAIRSALPTKGDE 601 Query: 740 DAA------------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 D + + D + +++++ + + + M AA +L+F Sbjct: 602 DGTAAARSGHYPNLQAYLEPDSAAFAADPIVMQMTREQLEKSIANTTALMKQAAKDLDFI 661 Query: 782 EAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 662 QAAQYRDEIIRLQ 674 >gi|291277558|ref|YP_003517330.1| excinuclease ABC subunit B [Helicobacter mustelae 12198] gi|290964752|emb|CBG40607.1| excinuclease ABC subunit B [Helicobacter mustelae 12198] Length = 654 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 318/658 (48%), Positives = 448/658 (68%), Gaps = 9/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + Y P+GDQ AI +L I + + Q L+GVTGSGKTF+MA +I + P ++M+ Sbjct: 2 FTLHAPYAPAGDQTQAIHKLSTFIKNGNQYQTLIGVTGSGKTFSMANIIARLNMPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R Sbjct: 62 HNKTLCAQLYSEFKGFFPKNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +D IVV+SVS YG+G+ E Y MI ++++G + LL LV Y R Sbjct: 122 SATTSLLAYDDVIVVASVSANYGLGNPEEYLTMIEKVQVGQHTSRDHLLKKLVDMGYSRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG F V G+ ++IFP++ E RV FG++IE I + + ++++ +++ IY Sbjct: 182 DNFFERGNFAVSGECVDIFPAYNEVEFVRVEFFGDEIERIGIYDSIERREVKRLDSYVIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ A++ I++EL+ RL E + +++E RL+ R +DLEM+E++G C+ Sbjct: 242 AANQFIVSYERQKIALRNIEKELQERLAFFESQDKMIEYSRLKTRTEFDLEMMESSGICR 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+LTG+ GE P +L +Y + L+ VDESHV++PQ GMY GD RK L Sbjct: 302 GIENYARHLTGKKEGETPYSLLDYFEQKGRPYLVIVDESHVSLPQFGGMYSGDRSRKEVL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL+FEE+ P + VSATP ELE + EQIIRPTGL+DP Sbjct: 362 VEYGFRLPSALDNRPLKFEEFIHKAPHFLFVSATPAQKELELSGQNVAEQIIRPTGLLDP 421 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+R + QV D+YDEI + R+L+T LTK+MAE+L++Y E ++++YMHSE+ Sbjct: 422 LYEVRDSDNQVLDLYDEIKGVVAKKQRVLITTLTKKMAEELSKYYAELGLKIQYMHSEID 481 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IR LRLG+FD+LVGINLLREGLD+PE L+AI+DADKEGFLRS+TSL+QT+GR Sbjct: 482 AIERNHLIRSLRLGEFDILVGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLVQTMGR 541 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARNV +VI YA IT+S+Q A++ T RR+KQ+E+N H I+P+SV+ + E + Sbjct: 542 AARNVEGRVIFYAKKITQSMQRAMEITDYRRKKQMEYNALHQISPKSVQRNLEEELK--- 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 LE +A + ++ + K + + +K L K+M +A L+FEEAAR+RDEI R+KS Sbjct: 599 LESSA---VLYKDKKAKIPKSERENIIKELNKKMLASAKLLDFEEAARLRDEIARIKS 653 >gi|29840717|ref|NP_829823.1| excinuclease ABC subunit B [Chlamydophila caviae GPIC] gi|33301869|sp|Q821H8|UVRB_CHLCV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|29835067|gb|AAP05701.1| excinuclease ABC, subunit B [Chlamydophila caviae GPIC] Length = 656 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 334/656 (50%), Positives = 433/656 (66%), Gaps = 11/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP AIA+L +GI + + Q+LLG TGSGKTFT+A V+ + RP +V+A Sbjct: 3 FELRAAFAPCGDQPEAIAKLTQGIRNDVQSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK IN +ID++R Sbjct: 63 HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G + L + LVK Y+ Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYASMALELKVGKEYPRTLLAAQLVKMNYQAS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R TFR G I+IFP++ D A R+ F + + I PLT +V + IY Sbjct: 183 PVA-QRSTFRERGSVIDIFPAYESDQAIRLEFFNDTLSSIEYSDPLTMIPTASVASTIIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A+ I+EEL+ R++ R +E RL R T+D+EM++ TG C+ Sbjct: 242 PGSHYVTPEAVREQAICSIREELEERMLFFHD--RPVEQDRLFHRTTHDIEMIKETGFCK 299 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ T PG PP L +Y PED LL +DESH T+PQI MYRGD RK +L EY Sbjct: 300 GIENYSRHFTKMPPGAPPACLLDYFPEDFLLVIDESHQTLPQIRAMYRGDLSRKQSLVEY 359 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG EL + QG IVEQIIRPTG+ DP E Sbjct: 360 GFRLPSAYDNRPLTYEEAQKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 419 Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 IR A QV+D+ +EI L+ Q +IL+ +TK++AED+ +L E +I Y+HS ++T Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQE-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ DLRLG DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRA Sbjct: 479 AERTRILADLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV KVI YAD T+SI+ + ET RRR+ QL++NK +NI P+ + + I +PI Sbjct: 539 ARNVEGKVIFYADQKTRSIEQTLKETERRRQIQLDYNKANNITPKPIIKAIFA--NPI-- 594 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 S + + LS K+ + +K M AA F+EAA+ RD++K K Sbjct: 595 -PQGGKKESQEPAKTPLSIKELEKLIKKFENLMQEAAHEFRFDEAAKYRDKMKAAK 649 >gi|270297065|ref|ZP_06203264.1| excinuclease ABC, B subunit [Bacteroides sp. D20] gi|270273052|gb|EFA18915.1| excinuclease ABC, B subunit [Bacteroides sp. D20] Length = 686 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 328/676 (48%), Positives = 464/676 (68%), Gaps = 23/676 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+H Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 4 FELTSAYQPTGDQPEAIAQLTEGVHEGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + +++++ G + + L LV Y R Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++++ I E P++G + + KI Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRVTFWGDEVDSIEEVDPMSGVTVAKFDAYKI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E EGR EA+RL++R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQI MY GD RK L E Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+F+E+ + I VSATP +EL + +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LTEYL N++ Y+HS+V TL Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 ERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726 RNVN VI+YAD IT S+QL IDET RRREKQL++N++H I PQ +K Sbjct: 543 RNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATNEA 602 Query: 727 --------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778 EK +E +T+ ++ D +S+K+ + ++ +K M AA L Sbjct: 603 SGEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEAAKKL 662 Query: 779 NFEEAARIRDEIKRLK 794 +F EAA+ RDE+ +++ Sbjct: 663 DFIEAAQYRDEVLKME 678 >gi|256384068|gb|ACU78638.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri str. GM12] gi|256384900|gb|ACU79469.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri str. GM12] gi|296455543|gb|ADH21778.1| excinuclease ABC subunit B [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 665 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 322/656 (49%), Positives = 437/656 (66%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ T Y PSGDQ AI +L KGI +K Q+LLG TG+GKTFT+A +I + A+V+A Sbjct: 8 YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FP N VEYFVS +D++QPEAY+P D YI+K+S N ++D MR Sbjct: 68 HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +LL RND IVV+SV+ ++ + + YS ++LK+G +++ ELL+ LV+ Y R Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI G+F GD ++I P + ++ +R+S+F ++IE I +T + N+ T+ I+ Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+TP+ L T I+ EL RL EL+ E +LLEAQRLEQR YDLE LE G C Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L R+ G+ P L +Y D + +DESH+T+PQI GMY D RK TL EY Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I SATPG +EL+ +V+QIIRPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ +EI+L Q R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+ DLR G +DV+VG+NLLREGLD+PE LV ILDADK+GFLR+ SLIQTIGR AR Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I+YADT+++++ AI ET RRR+ Q E NKKHNI P+++ + I E IL E Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNITPKTISKAISE---SILSEQ 604 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + K + + + +LR++M AA L+FE AA +RD I L++ Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELEN 660 >gi|331703863|ref|YP_004400550.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802418|emb|CBW54573.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 665 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 323/656 (49%), Positives = 437/656 (66%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ T Y PSGDQ AI +L KGI +K Q+LLG TG+GKTFT+A +I + A+V+A Sbjct: 8 YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FP N VEYFVS +D++QPEAY+P D YI+K+S N ++D MR Sbjct: 68 HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +LL RND IVV+SV+ ++ + + YS ++LK+G +++ ELL+ LV+ Y R Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI G+F GD ++I P + ++ +R+S+F ++IE I +T + N+ T+ I+ Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+TP+ L T I+ EL RL EL+ E +LLEAQRLEQR YDLE LE G C Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L R+ G+ P L +Y D + VDESH+T+PQI GMY D RK TL EY Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKQTLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I SATPG +EL+ +V+QIIRPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ +EI+L Q R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+ DLR G +DV+VG+NLLREGLD+PE LV ILDADK+GFLR+ SLIQTIGR AR Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I+YADT+++++ AI ET RRR+ Q E NKKHNI P+++ + I E IL E Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 604 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + K + + + +LR++M AA L+FE AA +RD I L++ Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELEN 660 >gi|313665659|ref|YP_004047530.1| excinuclease ABC, B subunit [Mycoplasma leachii PG50] gi|312949747|gb|ADR24343.1| excinuclease ABC, B subunit [Mycoplasma leachii PG50] Length = 665 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 322/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ T Y PSGDQ AI +L K I +K Q+LLG TG+GKTFT+A +I + A+V+A Sbjct: 8 YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FP N VEYFVS +D++QPEAY+P D YI+K+S N ++D MR Sbjct: 68 HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +LL RND IVV+SV+ ++ + + YS ++LK+G +++ ELL+ LV+ Y R Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI G+F GD ++I P + ++ +R+S+F ++IE I+ +T + N+ T+ I+ Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESINTLNTITNSILDNITTVTIH 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+TP+ L T I+ EL RL EL+ E +LLEAQRLEQR YDLE LE G C Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L R+ G+ P L +Y D + VDESH+T+PQI GMY D RK TL EY Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I SATPG +EL+ +V+QIIRPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ +EI+L Q R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+ DLR G +DV+VG+NLLREGLD+PE LV ILDADK+GFLR+ SLIQTIGR AR Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I+YADTI++++ AI ET RRR+ Q E NKKHNI P+++ + I E IL E Sbjct: 548 NVNGKAIMYADTISQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 604 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + K + + + +LR++M AA L+FE AA +RD I L++ Sbjct: 605 TKKALAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELEN 660 >gi|329964885|ref|ZP_08301893.1| excinuclease ABC, B subunit [Bacteroides fluxus YIT 12057] gi|328524526|gb|EGF51594.1| excinuclease ABC, B subunit [Bacteroides fluxus YIT 12057] Length = 685 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 332/675 (49%), Positives = 470/675 (69%), Gaps = 22/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 4 FELTSAYKPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + +++++ G + + L LV Y R Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ R+ +G++I+ I E P++G I ++ KI Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIAKFDSYKI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E EGR LEA+RL++R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPLEAKRLQERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKVNLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LTEYL N++ Y+HS+V TL Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 ERVKIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN VI+YAD IT+S+QL IDET RRREKQL++N++H I PQ +K+ K + V Sbjct: 543 RNVNGMVIMYADRITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATGDA 602 Query: 734 --DPILLEDAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 D + +D A+ ++++ D +S+ + + ++ RK M AA L+ Sbjct: 603 SADAMGSKDKASIAPRPYIEQETASSVAADPIVQYMSRAQLEKSIERTRKLMQEAAKKLD 662 Query: 780 FEEAARIRDEIKRLK 794 F EAA+ RDE+ +++ Sbjct: 663 FIEAAQYRDEVLKME 677 >gi|328915140|gb|AEB55973.1| excinuclease ABC, B subunit [Chlamydophila psittaci 6BC] Length = 661 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 332/656 (50%), Positives = 436/656 (66%), Gaps = 11/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP AIA+L +G+ + Q+LLG TGSGKTFT+A V+ + RP +V+A Sbjct: 8 FELRAAFSPCGDQPEAIAKLTQGVRNHTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK IN +ID++R Sbjct: 68 HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G + L S LVK Y+ Sbjct: 128 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELKVGREYPRAILASQLVKMNYQAS 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R TFR G I+IFP++ D+A R+ + + I PLT + +V +I +Y Sbjct: 188 SVA-QRSTFRERGSVIDIFPAYESDLAIRLEFSNDTLSSIEYSDPLTMIPMESVTSIILY 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ RL + R +E RL R T+D+EM++ TG C+ Sbjct: 247 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ T PG PP L +Y P++ LL +DESH T+PQI MYRGD RK +L EY Sbjct: 305 GIENYSRHFTKSPPGAPPACLLDYFPDNFLLVIDESHQTLPQIRAMYRGDRSRKESLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG EL + QG IVEQIIRPTG+ DP E Sbjct: 365 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 424 Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 IR A QV+D+ +EI +L+ Q +IL+ +TK++AED+ +L E +I Y+HS ++T Sbjct: 425 IRPATGQVDDLLEEIRKHLSKSQA-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ DLRLG DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRA Sbjct: 484 AERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ KVI YAD T SI+ + ET RRR+ QLE+NK + I P+ + + I +PI Sbjct: 544 ARNVDGKVIFYADHKTLSIEQTLKETERRRQIQLEYNKANKITPKPIIKAIFA--NPI-- 599 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D Q LS ++ + +K M AA+ F+EAA+ RD++K K Sbjct: 600 PQGGKKEVQ-DTPQQPLSTQELEKLIKKYENLMQQAANAFRFDEAAKYRDKMKAAK 654 >gi|329955051|ref|ZP_08296032.1| excinuclease ABC, B subunit [Bacteroides clarus YIT 12056] gi|328526341|gb|EGF53356.1| excinuclease ABC, B subunit [Bacteroides clarus YIT 12056] Length = 719 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 335/708 (47%), Positives = 477/708 (67%), Gaps = 24/708 (3%) Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168 LI LL N +I+ S+ ++S ++ F++ + Y P+GDQP AIAQL KG+ Sbjct: 6 LISQRYVLLTNSQIFDVT-FLSLPDNSDEMNKFELTSAYRPTGDQPEAIAQLTKGVREGI 64 Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 Q LLGVTGSGKTFT+A VI + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSY Sbjct: 65 PAQTLLGVTGSGKTFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSY 124 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSV 287 YDYYQPEAY+P +DTYIEK+ +IN++ID++R +AT +LL R D +VVSSVSCIYG+G+ Sbjct: 125 YDYYQPEAYLPSSDTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNP 184 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + ++ ++ G + + L LV Y R DI + RG FRV GD+++I+ ++ +++ Sbjct: 185 ADFYNNVIDVQQGKNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL- 243 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ +G++++ I E P++G I + KIY + ++T + A+ I+++L+ ++ Sbjct: 244 LRIVFWGDEVDSIEEVDPISGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLRKQV 303 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 E EGR EA+RL++R+TYD+EML G C IENYSRY GR G P L ++ P+ Sbjct: 304 QWFENEGRPFEAKRLQERVTYDMEMLRELGHCSGIENYSRYFDGREAGTRPYCLLDFFPD 363 Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527 D L+ +DESHV++PQI MY GD RK L EYGFRLP+ MDNRPL+FEE+ + I Sbjct: 364 DFLIVIDESHVSVPQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIY 423 Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587 VSATP +EL Q +GI+VEQ+IRPTGL+DP +E+R + Q++D+ +EI L ++ R L+ Sbjct: 424 VSATPADYELMQSEGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLV 483 Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 T LTKRMAE+LTEYL +++ Y+HS+V TLER++I+ DLR G++DVLVG+NLLREGLD Sbjct: 484 TTLTKRMAEELTEYLLNNSVKCNYIHSDVDTLERVKIMSDLREGEYDVLVGVNLLREGLD 543 Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 +PE LVAILDADKEGFLRS SL QT GRAARNVN VI+YAD IT+S+QL IDET RR Sbjct: 544 LPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGMVIMYADRITESMQLTIDETNRR 603 Query: 708 REKQLEHNKKHNINPQSV---------------------KEKIMEVIDPILLEDAATTNI 746 REKQL++N++H I P+ + KEK +E +T + Sbjct: 604 REKQLKYNEEHGITPRQIKKAKNLNVFAGTEGFAESGAGKEKSSATTPRPYVEQDSTATL 663 Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D +++ + + ++ +K M AA L+F EAA+ RDE+ +++ Sbjct: 664 AADPIVQYMNRAQLEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 711 >gi|329943301|ref|ZP_08292075.1| excinuclease ABC, B subunit [Chlamydophila psittaci Cal10] gi|332287878|ref|YP_004422779.1| excinuclease ABC subunit B [Chlamydophila psittaci 6BC] gi|313848450|emb|CBY17454.1| UvrABC system protein B UvrB [Chlamydophila psittaci RD1] gi|325506601|gb|ADZ18239.1| excinuclease ABC subunit B [Chlamydophila psittaci 6BC] gi|328814848|gb|EGF84838.1| excinuclease ABC, B subunit [Chlamydophila psittaci Cal10] Length = 656 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 332/656 (50%), Positives = 436/656 (66%), Gaps = 11/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P GDQP AIA+L +G+ + Q+LLG TGSGKTFT+A V+ + RP +V+A Sbjct: 3 FELRAAFSPCGDQPEAIAKLTQGVRNHTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK IN +ID++R Sbjct: 63 HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G + L S LVK Y+ Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELKVGREYPRAILASQLVKMNYQAS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R TFR G I+IFP++ D+A R+ + + I PLT + +V +I +Y Sbjct: 183 SVA-QRSTFRERGSVIDIFPAYESDLAIRLEFSNDTLSSIEYSDPLTMIPMESVTSIILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ RL + R +E RL R T+D+EM++ TG C+ Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 299 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ T PG PP L +Y P++ LL +DESH T+PQI MYRGD RK +L EY Sbjct: 300 GIENYSRHFTKSPPGAPPACLLDYFPDNFLLVIDESHQTLPQIRAMYRGDRSRKESLVEY 359 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG EL + QG IVEQIIRPTG+ DP E Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 419 Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 IR A QV+D+ +EI +L+ Q +IL+ +TK++AED+ +L E +I Y+HS ++T Sbjct: 420 IRPATGQVDDLLEEIRKHLSKSQA-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ DLRLG DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRA Sbjct: 479 AERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARNV+ KVI YAD T SI+ + ET RRR+ QLE+NK + I P+ + + I +PI Sbjct: 539 ARNVDGKVIFYADHKTLSIEQTLKETERRRQIQLEYNKANKITPKPIIKAIFA--NPI-- 594 Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D Q LS ++ + +K M AA+ F+EAA+ RD++K K Sbjct: 595 PQGGKKEVQ-DTPQQPLSTQELEKLIKKYENLMQQAANAFRFDEAAKYRDKMKAAK 649 >gi|282878379|ref|ZP_06287171.1| excinuclease ABC, B subunit [Prevotella buccalis ATCC 35310] gi|281299565|gb|EFA91942.1| excinuclease ABC, B subunit [Prevotella buccalis ATCC 35310] Length = 678 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 327/672 (48%), Positives = 462/672 (68%), Gaps = 18/672 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL GIH + Q+LLGVTGSGKTFT+A VI +Q P ++++ Sbjct: 3 FKLTSKYKPTGDQPEAIQQLTDGIHRGDPAQVLLGVTGSGKTFTVANVINNVQMPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ +IN++IDR+R Sbjct: 63 HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDLYIEKDLAINDEIDRLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL R D IVVSSVSCIYG+G + + I+ +K G+ +++ + L LV+ Y R Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPSAMTNSIITVKKGERLDRNDFLRKLVEALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ ++ R++ + +I+ I E +T +++ E I Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSNNI-LRITWWDEEIDSIEEVDSVTFHRLQEFEEYHI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTTKEQTEHAIRAIQDDLVKQVDYFNDLGDTIKAQRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D LL VDESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGREAGQRPYCLLDFFPQDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ + TI VSATP +EL++ +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDMLHQTIYVSATPADYELQEAEGVVVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ DEI ++ R+L+T LTKRMAE+LTEYL ++R Y+HS+V TL Sbjct: 422 DVRPSENQIDDLLDEILQRTEREERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMTDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734 RNVN KVI+YADTIT+S+Q IDET RRR QL++N++H+I PQ + ++I + Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHHITPQQIVKEIKNALPTSKEN 601 Query: 735 ------PILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 P L +A + + D L +++++ + + + M AA +L+F +A Sbjct: 602 EKDWRYPTLAAQQAYMEAESGAFAADPIVLRMTREQLEKSIANTTALMKQAAKDLDFLQA 661 Query: 784 ARIRDEIKRLKS 795 A+ RDEI RL++ Sbjct: 662 AQYRDEIVRLQA 673 >gi|299140557|ref|ZP_07033695.1| excinuclease ABC subunit B [Prevotella oris C735] gi|298577523|gb|EFI49391.1| excinuclease ABC subunit B [Prevotella oris C735] Length = 682 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 336/674 (49%), Positives = 464/674 (68%), Gaps = 21/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL +GI Q+LLGVTGSGKTFT+A VI +P ++++ Sbjct: 3 FKLTSKYSPTGDQPEAIEQLTEGIKEGIPAQVLLGVTGSGKTFTVANVIANANKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D IVVSSVSCIYG+G + + I+++K G ++++ E L LV Y R Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYIR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RGTFRV GD+++I ++ +++ RV+ + ++I+ I E T + ET +I Sbjct: 183 NDIDLQRGTFRVKGDTVDISMAYSDNI-LRVTWWDDEIDCIEEVDSTTFHSLERFETYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L R+ G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PGE P L ++ P+D L+ +DESHV++PQI+ MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +E+E+ +G+IVEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + R+L+T LTKRMAE+LTEYL I+ Y+HS+V TL Sbjct: 422 EVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S+Q IDET RRR QL++N+ H+I P+ +K++I + + +E Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEDHHITPKQIKKQIGSSLASLSVE 601 Query: 740 -----DAATTN-----ISIDAQQLSLS-----KKKGKAHL-KSLRKQ---MHLAADNLNF 780 DA T N I ++ + + + K+ KA L KS+ M AA +L+F Sbjct: 602 SNDRKDAVTQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDF 661 Query: 781 EEAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 662 IQAAQYRDEIIRLQ 675 >gi|288926680|ref|ZP_06420593.1| excinuclease ABC subunit B [Prevotella buccae D17] gi|288336531|gb|EFC74904.1| excinuclease ABC subunit B [Prevotella buccae D17] Length = 680 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 326/674 (48%), Positives = 462/674 (68%), Gaps = 22/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL GI Q+LLGVTGSGKTFT+A VI+ +++P ++++ Sbjct: 3 FELTSKYKPTGDQPEAIRQLTDGIKDGMPAQVLLGVTGSGKTFTVANVIQNVEKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R Sbjct: 63 HNKTLAAQLYQEMKGFFPRNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL R D IVVSSVSCIYG+G + Q +++LK G+++++ E L LV Y R Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQQSVIKLKKGETLDRNEFLRRLVDALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD++++F ++ ++V RV+ + ++I+ I E T ++ + E+ ++ Sbjct: 183 NDIDLQRGCFRVKGDTVDVFMAYSDNV-LRVTWWDDEIDAIEEVNAETFHRVESFESYEL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLVKQVDYFNEIGDTIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR GE P L ++ P+D LL VDESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+F+E+ L TI VSATP +EL + +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFDEFLSLLHQTIYVSATPADFELREAEGVVVEQIIRPTGLLDPQI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ DEI + + R+L+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 DVRPSENQIDDLLDEILTRSHRNERVLVTTLTKRMAEELTEYLLNNNVRANYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S+Q IDET RRR QL++N++H I PQ + + I + P + Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHGITPQQIVKAIGSAL-PTKGD 600 Query: 740 DAAT-------------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 + T + D + +++++ + + + M AA +L+F Sbjct: 601 EEGTAAARSGHYPNLQAYLEPDSAAFAADPIVMHMTREQLEKSIANTTALMKQAAKDLDF 660 Query: 781 EEAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 661 IQAAQYRDEIIRLQ 674 >gi|118575739|ref|YP_875482.1| excinuclease helicase subunit [Cenarchaeum symbiosum A] gi|118194260|gb|ABK77178.1| excinuclease helicase subunit [Cenarchaeum symbiosum A] Length = 649 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 329/657 (50%), Positives = 442/657 (67%), Gaps = 26/657 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +++ P+GDQP AI L G+ ++ +Q LLGVTGSGKTFT+A VI + +V++ Sbjct: 7 FDLVSEFAPTGDQPEAIDALASGVR-KKSLQTLLGVTGSGKTFTVANVIARTGKNTLVIS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E K FFP N V YFVSYYDYYQPE+Y+ +TDTYIEK++ +NEQI++MR Sbjct: 66 HNKTLAAQLYAELKQFFPGNNVGYFVSYYDYYQPESYMVQTDTYIEKDTVVNEQIEKMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 T LL IVVS+VSCIY +G+ + + +M + L+ G + +++ LV +Y+R Sbjct: 126 ETTAMLLSGEPTIVVSTVSCIYSLGNPDDWDEMAITLEEGRGAGRADVIRRLVDARYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + G FRV GD+I++ P++ +DV R+SMFG+++E IS +T + + V TI+++ Sbjct: 186 DVELAPGNFRVRGDTIDVIPAYSQDVV-RISMFGDEVERISVLDRMTMDEKQRVGTIRVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HY+ A+ IK ELK RL EL R LE QRLE R +YDLEM+E G C Sbjct: 245 PAKHYLIAGDARKRALGSIKSELKSRLPEL----RELERQRLEMRTSYDLEMIEELGYCS 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEP L ++ D LL +DESHVT+PQ+ GMY+GD RK L Y Sbjct: 301 GIENYSRHFDGRKPGEPAFCLLDFFGPDFLLVIDESHVTLPQLHGMYKGDHSRKGELITY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+FEE+ I VSATP +E + IVEQ++RPTGL+DP E Sbjct: 361 GFRLPSAYDNRPLKFEEFEGYLKNVIFVSATPSEYERTKS-AEIVEQLVRPTGLLDPVAE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + Q++D+ EI A++ R L+T LTKRMAEDL E+L +R +RVRYMHSE++ L+ Sbjct: 420 IRPTKGQMDDLVSEIGACAKRDERALVTTLTKRMAEDLAEFLSKRKVRVRYMHSEIEGLQ 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+IR LRLG+FDVLVGINLLREGLDIPE LVAILDADKEGFLR+ TSLIQT GRAAR Sbjct: 480 RTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNMTSLIQTFGRAAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +VI+YAD T S++ A+DET RRRE+Q E+N +H I P+S+ + I E + L+D Sbjct: 540 NSAGRVIMYADRTTASMKNALDETARRRERQSEYNVQHGITPRSITKAIPE--QTVKLDD 597 Query: 741 A---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +IS + +L S K+ A+ L+FE+A RD+I+RL+ Sbjct: 598 VKHKSPHDISREIIELEASMKR--------------HAEELSFEKAIECRDQIRRLR 640 >gi|301321364|gb|ADK70007.1| excinuclease ABC, B subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 665 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 322/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ T Y PSGDQ AI +L K I +K Q+LLG TG+GKTFT+A +I + A+V+A Sbjct: 8 YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FP N VEYFVS +D++QPEAY+P D YI+K+S N ++D MR Sbjct: 68 HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +LL RND IVV+SV+ ++ + + YS ++LK+G +++ ELL+ LV+ Y R Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI G+F GD ++I P + ++ +R+S+F ++IE I +T + N+ T+ I+ Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+TP+ L T I+ EL RL EL+ E +LLEAQRLEQR YDLE LE G C Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L R+ G+ P L +Y D + VDESH+T+PQI GMY D RK TL EY Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I SATPG +EL+ +V+QIIRPTGL+DP +E Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ +EI+L Q R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+ DLR G +DV+VG+NLLREGLD+PE LV ILDADK+GFLR+ SLIQTIGR AR Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I+YADT+++++ AI ET RRR+ Q E NKKHNI P+++ + I E IL E Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 604 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + K + + + +LR++M AA L+FE AA +RD I L++ Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELEN 660 >gi|224024032|ref|ZP_03642398.1| hypothetical protein BACCOPRO_00749 [Bacteroides coprophilus DSM 18228] gi|224017254|gb|EEF75266.1| hypothetical protein BACCOPRO_00749 [Bacteroides coprophilus DSM 18228] Length = 677 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 329/672 (48%), Positives = 457/672 (68%), Gaps = 23/672 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++++DY P+GDQP AIAQL G+ + Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELKSDYQPTGDQPEAIAQLTDGVLNGLPAQTLLGVTGSGKTFTIANVIRNVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKAFFPNNAVEYYVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D IVVSSVSCIYG+G+ + +++++ G +++ LL LV Y R Sbjct: 123 AATSALLSGRKDVIVVSSVSCIYGMGNPADFYNNVIEVRRGKRMDRNVLLRQLVDSLYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D + RG FRV GD+++IF ++ + + R+ + ++I+ I E P TG +I + KI Sbjct: 183 NDAELNRGNFRVKGDTVDIFLAYTDHI-LRIMFWDDEIDGIEEVDPDTGARISTFDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T R + A+ I+++L +++ E+ G+ EA+RL++R+TYD+EML G C Sbjct: 242 YPANLFMTTRESTLRAIHQIEDDLTLQVQHFEETGKFYEAKRLKERVTYDMEMLRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGREAGTRPYCLLDFFPKDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL F+E+ + I VSATP +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLTFDEFREMARQVIYVSATPAEYELQESEGVVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + R+L+T LTKRMAE+LT+YL IR Y+HS+V+TL Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEAQERVLVTTLTKRMAEELTDYLSRHGIRCTYIHSDVETL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ +LR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMEELRQGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YAD IT S++ IDET RRREKQL +N+ + I P+ ++ ILLE Sbjct: 542 RNVNGKVIMYADKITDSMRQTIDETNRRREKQLAYNEANGITPRQIRRSHTN----ILLE 597 Query: 740 DAATT-----------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 + ++ D +SK + K + RK M AA L+F E Sbjct: 598 NQEAKAGQGKKAKEYADMPDGLTMAADPIVEYMSKDQLKRSVDRTRKLMQEAARKLDFIE 657 Query: 783 AARIRDEIKRLK 794 AA+ RDE+ RL+ Sbjct: 658 AAQYRDELIRLE 669 >gi|330447708|ref|ZP_08311356.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491899|dbj|GAA05853.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 656 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 316/620 (50%), Positives = 426/620 (68%), Gaps = 2/620 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP A+A+L+ I S Q L GVTGSGKTFTMA +I +QRP +++A Sbjct: 6 FILHSAYPPSGDQPEALARLIGNIQSGVPHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S+INEQ++R+R Sbjct: 66 HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAINEQLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D IVV+SVS IYG+G E Y + + L +G ++++++ + L QY R Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPEQYRAVQIPLSVGMTLDREDFIQRLAALQYSRC 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + I R TFRV G+ +IFP+ E A RV MF + IE++ PLTG+ + ++E + Sbjct: 186 ERTIERATFRVHGEIFDIFPADSESKAVRVVMFDDTIEKLQWIDPLTGKVLGDIEHYFVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y R L A I+++L+ R+ EL + R++EA RL +R +D+EM++ G C Sbjct: 246 PKTLYAASREKLQKASIEIEKDLEARVAELNDQNRIVEAARLYERTMHDIEMMQQLGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS YL R+P PP TL +Y+P+D LLF+DESHV IPQIS MYR D RK TL +Y Sbjct: 306 GLENYSCYLNDRDPALPPTTLLDYLPKDGLLFIDESHVMIPQISAMYRSDESRKETLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F E+ L+P T+ VSATPG +EL++ Q + EQIIRPTGL+DP VE Sbjct: 366 GFRLPSAKNNRPLMFSEFEKLKPQTVFVSATPGEYELKKSQQHVTEQIIRPTGLLDPIVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +Q ED+ EI Q+ R+L+T LTK+ AE L + + E I+V Y+HS+VKT + Sbjct: 426 VRPLASQTEDLLKEIAERTQKDERVLVTTLTKKSAEALYDVMTELGIKVSYIHSDVKTEQ 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII DLR GK+DVL+GINLLREGLDIPE LVA+L+AD GFLRS +LIQ IGRAAR Sbjct: 486 RVEIIDDLRAGKYDVLIGINLLREGLDIPEASLVAVLNADHAGFLRSTQALIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILL 738 N N K ILYAD IT ++Q A+ E+ +RRE+Q +N+ H I P S + + +E +P Sbjct: 546 NANGKAILYADKITPAMQQAMSESQQRRERQEAYNQAHQITPASSQRQKANIENQEPAQH 605 Query: 739 EDAATTNISIDAQQLSLSKK 758 A N+S QQ++ ++K Sbjct: 606 TTAFCANLSELCQQITATEK 625 >gi|42561460|ref|NP_975911.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829339|sp|Q6MS38|UVRB_MYCMS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|42492959|emb|CAE77553.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 671 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 322/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ T Y PSGDQ AI +L K I +K Q+LLG TG+GKTFT+A +I + A+V+A Sbjct: 14 YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 73 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FP N VEYFVS +D++QPEAY+P D YI+K+S N ++D MR Sbjct: 74 HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 133 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +LL RND IVV+SV+ ++ + + YS ++LK+G +++ ELL+ LV+ Y R Sbjct: 134 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 193 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI G+F GD ++I P + ++ +R+S+F ++IE I +T + N+ T+ I+ Sbjct: 194 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 253 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y+TP+ L T I+ EL RL EL+ E +LLEAQRLEQR YDLE LE G C Sbjct: 254 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 313 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS +L R+ G+ P L +Y D + VDESH+T+PQI GMY D RK TL EY Sbjct: 314 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 373 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F+E+N L I SATPG +EL+ +V+QIIRPTGL+DP +E Sbjct: 374 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 433 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q++D+ +EI+L Q R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE Sbjct: 434 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 493 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+ DLR G +DV+VG+NLLREGLD+PE LV ILDADK+GFLR+ SLIQTIGR AR Sbjct: 494 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 553 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN K I+YADT+++++ AI ET RRR+ Q E NKKHNI P+++ + I E IL E Sbjct: 554 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 610 Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 T + K + + + +LR++M AA L+FE AA +RD I L++ Sbjct: 611 TKKTLAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELEN 666 >gi|291059535|gb|ADD72270.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum str. Chicago] Length = 677 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 319/671 (47%), Positives = 450/671 (67%), Gaps = 11/671 (1%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 I + +K + F++ + P+GDQ AAI L++G+H+ + Q L GVTGSGKTFT+A VI Sbjct: 3 ITDTAKHMKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIA 62 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +Q+P +V++ NK L+AQLY EFK FFP NAVEYFVSYYDYYQPE+YVP D YIEK++S Sbjct: 63 RVQKPTLVISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDAS 122 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 IN +I+RMR SAT SL+ER D IVV++VSCIYG+G ES+ + + +++ ++ ++L Sbjct: 123 INAEINRMRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKR 182 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV QY+R D + G FRV GD IEIFP++LE+ +R+ + + I +P++G Sbjct: 183 QLVSLQYERNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAV 241 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 +R E + +Y H+V + AM I++EL RL++L +E +L EA RL+ R YDL Sbjct: 242 LREFEELTVYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDL 301 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EML G C IENYS + GR GEPP TL Y P+D +LFVDESHVT+PQ+ MY GD Sbjct: 302 EMLGEMGYCHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGD 361 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L ++GFRLP DNRPL+ E+ L + +SATPG E Q IVEQ+IR Sbjct: 362 RVRKQNLIDFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQSVQ-IVEQLIR 420 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP +E+R Q+ED+ + + + R L+ LTK+MAEDLT+Y IR + Sbjct: 421 PTGLLDPCIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTK 480 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSE++T+ER+EI+ LR G+ +VLVGINLLREG+D+PE +AILDA+ GFLRS TS Sbjct: 481 YVHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTS 540 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQ IGRAARN V++YAD I+ +++ AI+ET RRR+ Q+ +N+ H I P+++K+ I Sbjct: 541 LIQIIGRAARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIE 600 Query: 731 EVI--DPILLEDAATTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 +++ + + +DAA + + DA + + + K +++LR M + A L FEEA Sbjct: 601 DILVREQEVKKDAARVQVAPLLRAADADVRTHAAR--KKMVQALRLHMKVCARELRFEEA 658 Query: 784 ARIRDEIKRLK 794 A IRD+I +L+ Sbjct: 659 ALIRDKILQLQ 669 >gi|160888163|ref|ZP_02069166.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492] gi|317478936|ref|ZP_07938083.1| excinuclease ABC [Bacteroides sp. 4_1_36] gi|156862298|gb|EDO55729.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492] gi|316904913|gb|EFV26720.1| excinuclease ABC [Bacteroides sp. 4_1_36] Length = 686 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 327/676 (48%), Positives = 463/676 (68%), Gaps = 23/676 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 4 FELTSAYQPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + +++++ G + + L LV Y R Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++++ I E P++G + + KI Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRVTFWGDEVDSIEEVDPMSGVTVAKFDAYKI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E EGR EA+RL++R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQI MY GD RK L E Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+F+E+ + I VSATP +EL + +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LTEYL N++ Y+HS+V TL Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 ERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726 RNVN VI+YAD IT S+QL IDET RRREKQL++N++H I PQ +K Sbjct: 543 RNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATNEA 602 Query: 727 --------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778 EK +E +T+ ++ D +S+K+ + ++ +K M AA L Sbjct: 603 SGEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEAAKKL 662 Query: 779 NFEEAARIRDEIKRLK 794 +F EAA+ RDE+ +++ Sbjct: 663 DFIEAAQYRDEVLKME 678 >gi|167762886|ref|ZP_02435013.1| hypothetical protein BACSTE_01250 [Bacteroides stercoris ATCC 43183] gi|167699226|gb|EDS15805.1| hypothetical protein BACSTE_01250 [Bacteroides stercoris ATCC 43183] Length = 716 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 332/695 (47%), Positives = 472/695 (67%), Gaps = 25/695 (3%) Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 I+ P S+ ++ ++ F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGK Sbjct: 17 IFIPF--LSLPDNPDEMNKFELTSAYRPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGK 74 Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 TFT+A VI + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P + Sbjct: 75 TFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSS 134 Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 DTYIEK+ +IN++ID++R +AT +LL R D +VVSSVSCIYG+G+ + +++++ G Sbjct: 135 DTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQG 194 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + L LV Y R DI + RG FRV GD+++I+ ++ +++ R+ +G++++ I Sbjct: 195 KTYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEVDSI 253 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 E P++G I + KIY + ++T + A+ I+++L ++ E EGR EA+ Sbjct: 254 EEVDPVSGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFESEGRPFEAK 313 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RL++R+TYD+EML G C IENYSRY GR G P L ++ P+D L+ +DESHV++ Sbjct: 314 RLQERVTYDMEMLRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSV 373 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQI MY GD RK L EYGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q Sbjct: 374 PQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQS 433 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 +GI+VEQ+IRPTGL+DP +E+R + Q++D+ +EI L ++ R L+T LTKRMAE+LTE Sbjct: 434 EGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLVTTLTKRMAEELTE 493 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 YL +++ Y+HS+V TLER++I+ DLR G++DVLVG+NLLREGLD+PE LVAILDAD Sbjct: 494 YLLNNSVKCNYIHSDVDTLERVKIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDAD 553 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS SL QT GRAARNVN VI+YAD IT+S+QL IDET RRREKQL++N++H I Sbjct: 554 KEGFLRSHRSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGI 613 Query: 721 NPQSV---------------------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759 PQ + KEK +E ++T ++ D +S+ + Sbjct: 614 TPQQIRKAKNLNVFAGTEGFAEGGTGKEKSPATAPRPYVEQESSTTVAADPIVRYMSRAQ 673 Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ++ RK M AA L+F EAA+ RDE+ +++ Sbjct: 674 LEKSIERTRKLMQEAAKKLDFIEAAQYRDEVLKME 708 >gi|157364900|ref|YP_001471667.1| excinuclease ABC subunit B [Thermotoga lettingae TMO] gi|189038008|sp|A8F8W9|UVRB_THELT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|157315504|gb|ABV34603.1| excinuclease ABC, B subunit [Thermotoga lettingae TMO] Length = 656 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 330/656 (50%), Positives = 447/656 (68%), Gaps = 12/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L++GI + Q L+GVTGSGKTFTMA VI + RPA+V++ Sbjct: 2 FKLVSDYEPTGDQPQAIDRLVEGIKKGYRFQTLIGVTGSGKTFTMANVISRLNRPALVIS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN VEYF+SYYDYYQPEAYVP D YIEK + IN+ + RMR Sbjct: 62 PNKTLAAQLYGEFKTFFPHNRVEYFISYYDYYQPEAYVPTKDLYIEKNADINDVLVRMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +S+ R D +VV+SVS IY G + +M +QL G + + L K Y+R Sbjct: 122 SALKSVRTRRDVVVVASVSSIYASGDPSDFDRMNIQLSTGLKISPHAVAQHLAKIGYERS 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + ++G FR+ GD +EI+P++ +D R+ FG+ ++ I F L + ++ I IY Sbjct: 182 NEITVKGCFRLRGDVLEIYPTY-QDEGIRIEFFGSVVDRIETFDKLNRSPLEELQKIIIY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VT L A++ IK EL RL EL+ +G++LEAQRL+QR +DLE+L G C Sbjct: 241 PAIEFVTTEEKLKRAVESIKNELDQRLTELKNQGKILEAQRLQQRTMHDLELLSALGYCP 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y +D L+F+DESH+ +PQ+ M+RG+ RK +L EY Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDDDVLVFLDESHIAVPQLRAMWRGEHSRKKSLVEY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ P I VSATPG +E Q IVEQIIRPTGL+DP VE Sbjct: 361 GFRLPSAFDNRPLTFEEFLKKVPQIIFVSATPGPFEY-QVSEQIVEQIIRPTGLIDPEVE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + QV+D+ EI ++G R L+TVLTK+ AE L+EYL E I+ Y+HSE+ +E Sbjct: 420 VRPTKYQVDDLISEIKKVVERGERALITVLTKKTAEKLSEYLVEMGIKSLYIHSELDAIE 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIE+++ LR G D +VGINLLREGLD+PE LVAILD+DKEGFLRS+T+LIQ IGR AR Sbjct: 480 RIEVLKKLRRGDVDAVVGINLLREGLDLPEVSLVAILDSDKEGFLRSETTLIQIIGRVAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739 N+N KV++YAD +T ++Q AIDET RRR+ Q+E+N+K+ I P++ ++ P+ +E Sbjct: 540 NLNGKVLMYADRVTPAMQRAIDETNRRRKIQMEYNEKYGITPKT-------IVKPLQIEI 592 Query: 740 -DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + ID QL+ K + +L L ++M+ AA L +E+AA++RDEI RL+ Sbjct: 593 FEKFMEKPEIDYHQLAKDLSK-EEYLSLLEEEMYRAASELRYEDAAKLRDEIFRLR 647 >gi|281423195|ref|ZP_06254108.1| excinuclease ABC subunit B [Prevotella oris F0302] gi|281402531|gb|EFB33362.1| excinuclease ABC subunit B [Prevotella oris F0302] Length = 682 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 335/674 (49%), Positives = 464/674 (68%), Gaps = 21/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL +GI Q+LLGVTGSGKTFT+A VI +P ++++ Sbjct: 3 FKLTSKYSPTGDQPEAIEQLTEGIKEGAPAQVLLGVTGSGKTFTVANVIANANKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D IVVSSVSCIYG+G + + I+++K G ++++ E L LV Y R Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYIR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RGTFRV GD+++I ++ +++ RV+ + ++I+ I E T + + ET +I Sbjct: 183 NDIDLQRGTFRVKGDTVDISMAYSDNI-LRVTWWDDEIDCIEEVDSATFHSLEHFETYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A+ I+++L R+ G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTERAICMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PGE P L ++ P+D L+ +DESHV++PQI+ MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +E+E+ +G+IVEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + R+L+T LTKRMAE+LTEYL I+ Y+HS+V TL Sbjct: 422 EVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S+Q IDET RRR QL++N+ H+I P+ +K++I + + +E Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEVHHITPKQIKKQIGSSLASLSVE 601 Query: 740 -----DAATTN-----ISIDAQQLSLS-----KKKGKAHL-KSLRKQ---MHLAADNLNF 780 DA N I ++ + + + K+ KA L KS+ M AA +L+F Sbjct: 602 SNDRKDAVIQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDF 661 Query: 781 EEAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 662 IQAAQYRDEIIRLQ 675 >gi|332882356|ref|ZP_08449984.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679740|gb|EGJ52709.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 673 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 331/666 (49%), Positives = 469/666 (70%), Gaps = 14/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ DY P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 4 FELTADYSPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIQNINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYGEFKSFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ ++ +++LK G +++ L LV Y R Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPAAFYDNVIELKRGKLLDRNVFLRRLVDSLYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD+++I+ ++ D RV+ + ++I+ I E P++ ++ + + +I Sbjct: 184 NDLNLERGCFRVKGDTVDIYLAY-SDNLLRVTFWDDEIDAIEEVDPVSCLRLGSFDEYRI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L ++ E+ G+ EA+RL +R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKESTAKAIHQIEDDLHKQVSYFEEIGKPYEAKRLYERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQI+ MY GD RK L E Sbjct: 303 SGIENYSRYFDGREAGTRPYCLLDFFPEDFLIVIDESHVSVPQINAMYGGDRARKKNLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L I VSATP +EL+Q +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFEEFQQLAKQVIYVSATPADYELQQSEGIVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + QV+D+ +EI ++ RIL+T LTKRMAE+LT+Y + +IR Y+HS+V TL Sbjct: 423 EVRPSLNQVDDLMEEIQQRIEKDERILVTTLTKRMAEELTDYFMKHDIRTNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 483 ERVQIMDDLRAGRFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVIDPIL 737 RNV+ K I+YAD IT S+Q IDET RRREKQL++N++H I PQ +K+ K+ ++I Sbjct: 543 RNVHGKAIMYADRITDSMQKTIDETNRRREKQLKYNEEHGITPQQIKKGRKMTDLISAN- 601 Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 E A T I+ ++ +++ + + ++ RK M AA L+F EAA+ RD Sbjct: 602 AEAHAETRAYIEPEERMAVADPIMEYMTRDQLEKSIERSRKLMQEAAKKLDFIEAAQYRD 661 Query: 789 EIKRLK 794 E+ R++ Sbjct: 662 EMLRME 667 >gi|319901960|ref|YP_004161688.1| Excinuclease ABC subunit B [Bacteroides helcogenes P 36-108] gi|319416991|gb|ADV44102.1| Excinuclease ABC subunit B [Bacteroides helcogenes P 36-108] Length = 684 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 330/675 (48%), Positives = 461/675 (68%), Gaps = 22/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +GI Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 4 FELTSTYKPTGDQPEAIAQLTEGIREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + +++++ G + + L LV Y R Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGHNFSRNVFLRRLVDSLYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD+++I+ ++ +++ R+ +G++I+ I E P++G I + KI Sbjct: 184 NDMDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPISGVSIAKFDGYKI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L + E EGR EA+RL++R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQTQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQI MY GD RK L E Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKVNLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+F+E+ + I VSATP +EL + +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFDEFEAMAKQVIYVSATPADYELVRSEGIVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LTEYL N++ Y+HS+V TL Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKKERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR GK+DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 ERVKIMSDLREGKYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE------------ 727 RNVN VI+YAD IT+S+QL IDET RRREKQL +N++H I PQ +++ Sbjct: 543 RNVNGMVIMYADKITESMQLTIDETNRRREKQLRYNEEHGIIPQQIRKAKNLNVFAGAES 602 Query: 728 -------KIMEVIDP-ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 K + P +E + I+ D +S+ + + ++ RK M AA LN Sbjct: 603 SAETTGGKNKATVTPRPYVEQNTMSAIAADPIMQYMSRAQLEKSIERTRKLMQEAAKKLN 662 Query: 780 FEEAARIRDEIKRLK 794 F EAA+ RDE+ +++ Sbjct: 663 FIEAAQYRDEVLKME 677 >gi|29345980|ref|NP_809483.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|298387375|ref|ZP_06996928.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_14] gi|81842293|sp|Q8AA95|UVRB_BACTN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|29337874|gb|AAO75677.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|298260044|gb|EFI02915.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_14] Length = 677 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 336/668 (50%), Positives = 462/668 (69%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++IF ++ D RV+ +G++I+ I E P+TG E KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAY-SDTLLRVTFWGDEIDGIEEVDPITGVTTAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D LL +DESHV++PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGSPGS 601 Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D +L E A + NI+ D +SK + + ++ RK M AA L F EAA+ Sbjct: 602 EADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 R+E+ +L+ Sbjct: 662 RNELLKLE 669 >gi|289064128|gb|ADC80465.1| putative UvrABC system protein B [Comamonas testosteroni] Length = 658 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 302/590 (51%), Positives = 417/590 (70%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F + ++Y P+GDQP AIA+LL + Q L G+TGSGKTFTMA VI ++RP +++ Sbjct: 5 MFILHSNYTPAGDQPEAIARLLSDLEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLIL 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK L AQLYSE K+FFP NAVEYFVSYYDY+QPE Y+P +D +I+K+S+IN+ ++R+R Sbjct: 65 APNKTLTAQLYSEMKHFFPENAVEYFVSYYDYFQPEVYIPGSDRFIQKDSAINDHLERLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 S T+SL+ER D IVV+SVS IYG+G ++Y + + L G ++ Q+EL+ LV QY+R Sbjct: 125 LSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQMALSPGANLNQRELIRRLVLLQYER 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + + R TFRV G+ I+IFP+ E A RV + + +E + P+TG+ + ++ + Sbjct: 185 TERTLKRATFRVRGEVIDIFPADSEHRAVRVELLDDSVESVQWLDPVTGKTLGKIDHYLV 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + + TP + +A + I E++ R+ +L ++ RL+EA RL +RIT D+EM+ G C Sbjct: 245 SPKTLFATPTNKIESASEKILAEMEERVAQLNRDNRLVEANRLYERITNDVEMMRELGYC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 +ENYS Y + R+ PP TL +Y+P+D LLFVDESHV +PQIS MYRGD RK TL + Sbjct: 305 SGMENYSCYFSDRDSAAPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLID 364 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS +NRPL F E+ ++P TI VSATPG +EL +G +VEQIIRPTGL+DP V Sbjct: 365 YGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGEYELRVSKGRVVEQIIRPTGLLDPKV 424 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R A ++ D+ EI+ ++ R+L+T LTK AE+LT++L + IR RYMHS++K Sbjct: 425 EVRKADGRMNDLLAEISTCVKRKDRVLVTTLTKVGAEELTDFLTDSGIRARYMHSDIKAE 484 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+EII LR G+FDVL+G++LLREGLDIPE LVAILDAD+ GFLRS +LIQ IGR A Sbjct: 485 DRVEIINGLRAGEFDVLIGVSLLREGLDIPEASLVAILDADRAGFLRSAQALIQMIGRVA 544 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 RN N K ILYAD +T ++Q AIDET RRRE Q+ N+++ I+P S K+ Sbjct: 545 RNENGKAILYADAMTPAMQQAIDETNRRRELQIAFNEENGISPTSSVRKL 594 >gi|282859471|ref|ZP_06268576.1| excinuclease ABC, B subunit [Prevotella bivia JCVIHMP010] gi|282587699|gb|EFB92899.1| excinuclease ABC, B subunit [Prevotella bivia JCVIHMP010] Length = 681 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 323/675 (47%), Positives = 467/675 (69%), Gaps = 23/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +G+ ++ Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSKYKPTGDQPEAIKELTEGLKRGDQSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D I+VSSVSCIYG+G + + +V +K G V++ E L LV Y R Sbjct: 123 SAVSSLLSGRKDVIIVSSVSCIYGMGGPAAMQESVVHIKKGQIVDRNEFLRKLVDILYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ +++ R++ + ++I+ I E P+ ++ + + +I Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSDNI-LRITWWDDEIDTIEEVDPIAFHRLASFDAYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L +++ ++ G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTTKEQTEQAIRMIQDDLVLQVDLFKELGESIKAQRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR GE P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRTAGERPYCLLDFFPKDYLVVIDESHVSVPQISAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ +DNRPL+FEE++ L I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAALDNRPLKFEEFHNLIHQIIYVSATPADFELRETEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI + + R+L+T LTKRMAE+LTEYL + +IR Y+HS+V +L Sbjct: 422 DVRPSENQIDDLMNEILIRVECEERVLVTTLTKRMAEELTEYLLDHDIRTAYIHSDVASL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++II DLR G +DVLVG+NLLREGLDIPE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIINDLRAGMYDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S+Q IDET RRR KQL++N+ H I P + + I + + P E Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETMRRRTKQLKYNEDHGITPTQIIKAIKDTL-PTNGE 600 Query: 740 DAATTN--------------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 A T+ + D L ++K++ + +++ M AA +L+ Sbjct: 601 SAITSKGATIKNMQPKAYAEPTNTAAFAADPIILRMTKEQLEKSIQNTTALMKQAAKDLD 660 Query: 780 FEEAARIRDEIKRLK 794 F +AA+ RDEI RL+ Sbjct: 661 FLQAAQYRDEILRLQ 675 >gi|15835489|ref|NP_297248.1| excinuclease ABC subunit B [Chlamydia muridarum Nigg] gi|270285670|ref|ZP_06195064.1| excinuclease ABC subunit B [Chlamydia muridarum Nigg] gi|270289678|ref|ZP_06195980.1| excinuclease ABC subunit B [Chlamydia muridarum Weiss] gi|301337065|ref|ZP_07225267.1| excinuclease ABC subunit B [Chlamydia muridarum MopnTet14] gi|14195310|sp|Q9PJF4|UVRB_CHLMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|7190903|gb|AAF39671.1| excinuclease ABC, subunit B [Chlamydia muridarum Nigg] Length = 676 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 330/670 (49%), Positives = 437/670 (65%), Gaps = 19/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +Q + P GDQP AI QL +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 18 FVLQAPFLPCGDQPEAIRQLSRGILDGIPSQVLLGTTGSGKTFTMANVIANVNVPTLVLA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 78 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L + LV+ Y+ Sbjct: 138 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALILEVGKEYPRSQLSAQLVRMHYQ-A 196 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT V ++ +Y Sbjct: 197 SASPQRSAFRERGSVIDIFLAYESDLAVRLEFVNDTLVSIEYTDPLTMIPSHTVPSVTLY 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ RL+ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 257 PGSHYVTPEAVREQAIRTIREELEQRLLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 314 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y PED LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 315 GIENYSRHFTGAAPGEPPTCLLDYFPEDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 374 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE + VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 375 GFRLPSAFDNRPLTYEEARRYFRRVVYVSATPGELEVQESRGHIIEQIIRPTGIPDPLPE 434 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 435 IRPATGQIDDLLEEI----RQRLRKDQEKILVVSVTKKLAEDIAAFLAELGIAAAYLHSG 490 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 491 IETAERTQILTDLRLGTIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 550 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ KVI YAD IT S+ + ET RRR+ QL++NKKHNI P+ +I P Sbjct: 551 GRAARNVHGKVIFYADRITPSMDHMLKETERRRQIQLDYNKKHNITPKP-------IIKP 603 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 IL D++ + S + ++ +K + M+ AA + F+EAA+ RD + K Sbjct: 604 ILANPITKEGAQEDSRPETQSTEDLESSIKQYEEAMYKAAQDFQFDEAAKYRDLMNAAKR 663 Query: 796 SPYFQGLDDS 805 F+ +D Sbjct: 664 QLLFKQGEDG 673 >gi|313158966|gb|EFR58343.1| excinuclease ABC, B subunit [Alistipes sp. HGB5] Length = 691 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 321/669 (47%), Positives = 442/669 (66%), Gaps = 15/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P GDQP AI QL+ I K LLGVTGSGKTFT+A V+ + RP +V++ Sbjct: 3 FKLVSDYAPMGDQPEAIEQLVGSIRHGSKHNTLLGVTGSGKTFTVANVVAQLNRPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+NFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ SIN +I+++R Sbjct: 63 HNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINAEIEKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +LL R D IVVSSVSC+YG G+ + + +K+G V K L LV+ Y R Sbjct: 123 RTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAIDIKVGQIVSYKHFLYKLVEALYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + + TFRV GD+++I + E +RV + N+IE I P+TGQ+I +++ + Sbjct: 183 TERELEPATFRVNGDTVDIMAAFGEFGSQCFRVMFYDNEIEAIQTIDPVTGQRIHSLDNL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 +Y S +VT + +N A++ I +L ++ E+ GR +EAQR++QR+ YD+EM++ G Sbjct: 243 TLYPTSLFVTTKERINGAVQQIYLDLGRQIEFFERAGRPMEAQRIKQRVEYDIEMIKELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR+ G P L +Y P+D LL VDESHVTIPQ+ M+ GD RK L Sbjct: 303 YCPGIENYSRYFDGRSEGTRPFCLIDYFPKDYLLVVDESHVTIPQVHAMFGGDRARKENL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLP+ DNRP+ F E+ L+ T+I VSATP +EL + +G+IVEQ+IRPTGLVDP Sbjct: 363 VEYGFRLPAAKDNRPVTFAEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+E+R Q++D+ +EI+ + ++L+T +TKRMAE+L++Y +R RY+HS+V Sbjct: 423 PLEVRVTMNQIDDLLEEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSDVD 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 TLERI+I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLR+ SL Q GR Sbjct: 483 TLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIAGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK-----EKIMEV 732 AAR+ VILYADT T S++ AI+++ RRREKQ+ +N +H + P+ + + + Sbjct: 543 AARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHGMLPRRAQRSGSGQSTLLT 602 Query: 733 IDPILLEDAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 + E AA I + D Q+ + + A + R+ M AA +L+F AA+ Sbjct: 603 TRTDVPEIAAVYPIAEDHYMAAADVQKTYAASENLDALIVKAREDMERAAKSLDFLAAAK 662 Query: 786 IRDEIKRLK 794 RD + L+ Sbjct: 663 FRDRMYELQ 671 >gi|15639110|ref|NP_218556.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum str. Nichols] gi|189025350|ref|YP_001933122.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum SS14] gi|6136157|sp|O83154|UVRB_TREPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238689314|sp|B2S264|UVRB_TREPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|3322379|gb|AAC65106.1| excinuclease ABC, subunit B (uvrB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017925|gb|ACD70543.1| excinuclease ABC, subunit B [Treponema pallidum subsp. pallidum SS14] Length = 668 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 317/661 (47%), Positives = 445/661 (67%), Gaps = 11/661 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQ AAI L++G+H+ + Q L GVTGSGKTFT+A VI +Q+P +V++ Sbjct: 4 FKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L+AQLY EFK FFP NAVEYFVSYYDYYQPE+YVP D YIEK++SIN +I+RMR Sbjct: 64 HNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ER D IVV++VSCIYG+G ES+ + + +++ ++ ++L LV QY+R Sbjct: 124 SATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + G FRV GD IEIFP++LE+ +R+ + + I +P++G +R E + +Y Sbjct: 184 DAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEELTVY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 H+V + AM I++EL RL++L +E +L EA RL+ R YDLEML G C Sbjct: 243 PAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGYCH 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS + GR GEPP TL Y P+D +LFVDESHVT+PQ+ MY GD RK L ++ Sbjct: 303 GIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLIDF 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLP DNRPL+ E+ L + +SATPG E Q IVEQ+IRPTGL+DP +E Sbjct: 363 GFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQSVQ-IVEQLIRPTGLLDPCIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q+ED+ + + + R L+ LTK+MAEDLT+Y IR +Y+HSE++T+E Sbjct: 422 VRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIETIE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EI+ LR G+ +VLVGINLLREG+D+PE +AILDA+ GFLRS TSLIQ IGRAAR Sbjct: 482 RVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738 N V++YAD I+ +++ AI+ET RRR+ Q+ +N+ H I P+++K+ I +++ + + Sbjct: 542 NARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQEVK 601 Query: 739 EDAATTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 +DAA + + DA + + + K +++LR M + A L FEEAA IRD+I +L Sbjct: 602 KDAARVQVAPLLRAADADVRTHAAR--KKMVQALRLHMKVCARELRFEEAALIRDKILQL 659 Query: 794 K 794 + Sbjct: 660 Q 660 >gi|189466026|ref|ZP_03014811.1| hypothetical protein BACINT_02390 [Bacteroides intestinalis DSM 17393] gi|189434290|gb|EDV03275.1| hypothetical protein BACINT_02390 [Bacteroides intestinalis DSM 17393] Length = 682 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 328/673 (48%), Positives = 468/673 (69%), Gaps = 20/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 4 FELTSAYKPTGDQPEAIAELTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYSEFKAFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + + +++++ G + + L LV Y R Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYENVIEVQQGKAFSRNVFLRRLVDSLYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ R+ +G++I+ I E P++G I +T KI Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIIFWGDEIDSIEEVDPISGVTIARFDTYKI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E EGR EA+RL++R+TYD+EM+ G C Sbjct: 243 YPANLFMTSKEATLRAIHEIEDDLHKQVQWFESEGRPFEAKRLQERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR+ G P L ++ PED L+ +DESHV++PQI MY GD RK L E Sbjct: 303 SGIENYSRYFDGRSAGSRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +G++VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELIQSEGVVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LTE+L N++ Y+HS+V TL Sbjct: 423 EVRPSHNQIDDLMEEIQIRIEKNERTLVTTLTKRMAEELTEFLLNNNVKCNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 ERVKIMSDLREGLYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDP--- 735 RNVN VI+YAD IT+S+QL IDET RRREKQL++N+++ I PQ +K+ K + V P Sbjct: 543 RNVNGMVIMYADRITESMQLTIDETNRRREKQLKYNEEYGITPQQIKKAKNLNVFAPNTA 602 Query: 736 --------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 +E ++ +I+ D +S+ + + ++ RK M AA L+F Sbjct: 603 LENGFTEKGTTTPRPYVEQESSASIAADPIVQYMSRPQLEKSIERTRKLMQEAAKKLDFI 662 Query: 782 EAARIRDEIKRLK 794 EAA+ RDE+ +++ Sbjct: 663 EAAQYRDELLKME 675 >gi|187922139|ref|YP_001893781.1| excinuclease ABC subunit B [Burkholderia phytofirmans PsJN] gi|187713333|gb|ACD14557.1| excinuclease ABC, B subunit [Burkholderia phytofirmans PsJN] Length = 659 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 307/596 (51%), Positives = 419/596 (70%), Gaps = 1/596 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L++GI K Q L G+TGSGKTFTMA VI + RP +++A Sbjct: 6 FILHSAYTPAGDQPEAIARLIEGIEEGAKHQTLKGITGSGKTFTMANVIHRLNRPTLMLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQLY E K FFP NAVE+FVSYYD++QPE Y+P +D +I+K+S+IN+ ++R+R Sbjct: 66 PNKTLTAQLYEEMKQFFPENAVEFFVSYYDFFQPEVYMPGSDRFIQKDSAINDHLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D IVV+SVS IYG+G Y ++ + L G S +EL+ LV+ QY+R Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPNGYRELQIALSRGISFRPRELIRRLVRLQYERV 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + RGTFRV GD+++IFP+ E A RV + + ++ + P TG ++ ++ + Sbjct: 186 ERTLKRGTFRVRGDAVDIFPADSEYRAVRVELLDDSVQSVHWIDPATGAQLGEIDHYLVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + TPR +N+A I E++ R+ EL E RL+EA RL +RIT D+EM+ G C Sbjct: 246 PKTLFATPRNRVNSATIKILAEMEARVAELNSENRLVEADRLYERITGDVEMMRELGYCP 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS YL GR+P PP TL +Y+P D LLFVDESHV +PQIS MY+GD RK TL +Y Sbjct: 306 GMENYSCYLNGRDPALPPNTLLDYLPTDGLLFVDESHVMVPQISAMYKGDQSRKDTLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL FEE+ ++P TI VSATPG++EL +G V QIIRPTGL+DP VE Sbjct: 366 GFRLPSSKNNRPLSFEEFEKVKPQTIFVSATPGNYELAISKGRFVSQIIRPTGLLDPEVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R+ ++D+ EI + R+L+T LTKR AE+L +++ ER IR RY+H+++KT + Sbjct: 426 VRTTDGCIDDLLVEIKKCVKNKNRVLVTTLTKRAAEELNDFMTERGIRSRYLHADIKTED 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 RIEII LR G+FDVL+GI+LLREGLDIPE LVAILDAD GFLRS +LIQ IGR AR Sbjct: 486 RIEIINGLREGEFDVLIGISLLREGLDIPEAALVAILDADHAGFLRSAQALIQMIGRVAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP-QSVKEKIMEVIDP 735 N + ILYAD IT +++ A+DET RR+KQ+E N+++ I P SV++ E ++P Sbjct: 546 NEEGRAILYADGITPAMKQAMDETGSRRKKQIEFNEENGIVPASSVRKLASEHVEP 601 >gi|253568620|ref|ZP_04846031.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_6] gi|251842693|gb|EES70773.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_6] Length = 677 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 335/668 (50%), Positives = 461/668 (69%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++IF ++ D RV+ +G++I+ I E P+TG E KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAY-SDTLLRVTFWGDEIDGIEEVDPITGVTTAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D LL +DESHV++PQ+ MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGSPSS 601 Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 D +L E A + NI+ D +SK + + ++ RK M AA L F EAA+ Sbjct: 602 EADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 R+E+ +L+ Sbjct: 662 RNELLKLE 669 >gi|256045133|ref|ZP_05448033.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|265991568|ref|ZP_06104125.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|263002352|gb|EEZ14927.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1] Length = 547 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 294/415 (70%), Positives = 347/415 (83%) Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 NSHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC Sbjct: 1 NSHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAG 60 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501 IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYG Sbjct: 61 IENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYG 120 Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561 FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+ G+ EQ+IRPTGL+DPPVEI Sbjct: 121 FRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEI 180 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R A+TQV+DV EI A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER Sbjct: 181 RPAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 240 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN Sbjct: 241 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 300 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741 V+ KVILYAD +T S+Q AIDET RRREKQ +N+ H I P SVK+ I +++D + D Sbjct: 301 VDGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDH 360 Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 +IS A++ ++ +H++ L KQM AA +L+FE+AAR+RDEIKRL+ + Sbjct: 361 VRADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 415 >gi|255691528|ref|ZP_05415203.1| excinuclease ABC subunit B [Bacteroides finegoldii DSM 17565] gi|260622919|gb|EEX45790.1| excinuclease ABC subunit B [Bacteroides finegoldii DSM 17565] Length = 677 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 333/669 (49%), Positives = 466/669 (69%), Gaps = 15/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYGEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ I E P++G + E KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPVSGVTVAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+LTEYL NIR Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNIRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+ + ++V Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLDVFGNANS 601 Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 + +L E A T NI+ D +SK + + ++ RK M AA L F EAA+ Sbjct: 602 ETNELLKEKQAYIEPTTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLKS 795 RDE+ +L++ Sbjct: 662 RDELLKLEN 670 >gi|260592314|ref|ZP_05857772.1| excinuclease ABC subunit B [Prevotella veroralis F0319] gi|260535764|gb|EEX18381.1| excinuclease ABC subunit B [Prevotella veroralis F0319] Length = 680 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 318/673 (47%), Positives = 465/673 (69%), Gaps = 20/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYKPTGDQPEAIKELTEGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKAFFPENAVEYYVSYYDYYQPEAYLPTTDVYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D IVVSSVSCIYG+G+ + + ++Q+K G +++ E L LV Y R Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIQIKKGQIIDRNEFLRRLVDSLYTR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ +++ R++ + ++I+ I E P+ +I + ++ Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNI-LRITWWDDEIDTIEEVDPIAFHRIATFDDYEL 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I++++ ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDMVKQVDFFTQLGDNIKAQRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRKAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+FEE++ L I VSATP +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFEEFHNLIHQIIYVSATPADYELKESEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + A++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V +L Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++II DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 482 DRVKIINDLRAGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN KVI+YAD IT+S+Q IDET RRR KQL++N++H+I P+ + + I + + Sbjct: 542 RNVNGKVIMYADNITESMQRTIDETMRRRVKQLKYNEEHHITPKQIVKAIKDTLPKTGRS 601 Query: 734 ------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781 I E + + D + ++K++ + + + M AA +L+F Sbjct: 602 TTAQAFPFAKGAKGIYTEPTQSMAFAADPIVMRMTKEQLEKSIANTTALMKQAAKDLDFL 661 Query: 782 EAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 662 QAAQYRDEIIRLQ 674 >gi|330996268|ref|ZP_08320153.1| excinuclease ABC, B subunit [Paraprevotella xylaniphila YIT 11841] gi|329573460|gb|EGG55067.1| excinuclease ABC, B subunit [Paraprevotella xylaniphila YIT 11841] Length = 673 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 327/665 (49%), Positives = 466/665 (70%), Gaps = 12/665 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ DY P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 4 FELTADYSPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIQNINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYGEFKSFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ ++ +++LK G +++ L LV Y R Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPAAFYDNVIELKRGKLLDRNVFLRRLVDSLYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG FRV GD+++I+ ++ D RV+ + ++I+ I E P++ ++ + + +I Sbjct: 184 NDLNLERGCFRVKGDTVDIYLAY-SDNLLRVTFWDDEIDAIEEVDPVSCLRLGSFDEYRI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L ++ E+ G+ EA+RL +R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKESTAKAIHQIEDDLHKQVSYFEETGKPYEAKRLYERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQI+ MY GD RK L E Sbjct: 303 SGIENYSRYFDGREAGTRPYCLLDFFPEDFLIVIDESHVSVPQINAMYGGDRARKKNLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ L I VSATP +EL+Q +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFEEFQQLAKQVIYVSATPADYELQQSEGIVVEQVIRPTGLLDPVI 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + QV+D+ +EI ++ RIL+T LTKRMAE+LT+Y + +IR ++HS+V TL Sbjct: 423 EVRPSLNQVDDLMEEIQQRIEKDERILVTTLTKRMAEELTDYFMKHDIRTNFIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G+FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT+GRAA Sbjct: 483 ERVQIMDDLRAGRFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVI---- 733 RNV+ K I+YAD IT S++ IDET RRREKQL++N++H I PQ +K+ K+ ++I Sbjct: 543 RNVHGKAIMYADRITDSMRKTIDETNRRREKQLKYNEEHGITPQQIKKGRKMTDLISANA 602 Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 +P + D +++ + + ++ RK M AA L+F EAA+ RDE Sbjct: 603 EAHAEPRAYIEPEEKMAVADPIMEYMTRDQLEKSIERSRKLMQEAAKKLDFIEAAQYRDE 662 Query: 790 IKRLK 794 + R++ Sbjct: 663 MLRME 667 >gi|160885710|ref|ZP_02066713.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483] gi|156108523|gb|EDO10268.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483] Length = 676 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 332/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 SATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ I E P+TG I + KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601 Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D +L E + +T NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 ADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +L+ Sbjct: 662 DELLKLE 668 >gi|153806678|ref|ZP_01959346.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185] gi|149131355|gb|EDM22561.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185] Length = 677 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 334/668 (50%), Positives = 464/668 (69%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTDGVIQGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ I E P+TG I E KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPVTGVTIAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKSERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNANS 601 Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 + +L E A T NI+ D +SK + + ++ RK M AA L F EAA+ Sbjct: 602 ETEELLKEKHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 RDE+ +L+ Sbjct: 662 RDELLKLE 669 >gi|224539631|ref|ZP_03680170.1| hypothetical protein BACCELL_04539 [Bacteroides cellulosilyticus DSM 14838] gi|224518722|gb|EEF87827.1| hypothetical protein BACCELL_04539 [Bacteroides cellulosilyticus DSM 14838] Length = 683 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 326/674 (48%), Positives = 463/674 (68%), Gaps = 21/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 4 FELTSAYKPTGDQPEAIAELTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 64 HNKTLAAQLYSEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + +++++ G + + L LV Y R Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGKAFSRNVFLRRLVDSLYVR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ R+ +G+D++ I E P++G I + KI Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIIFWGDDVDSIEEVDPISGVTIARFDAYKI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E EGR EA+RL++R+TYD+EM+ G C Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQI MY GD RK L E Sbjct: 303 SGIENYSRYFDGRKAGSRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R L+T LTKRMAE+LTE+L +++ Y+HS+V TL Sbjct: 423 EVRPSHNQIDDLMEEIQIRIEKNERTLVTTLTKRMAEELTEFLLNNDVKCNYIHSDVDTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 ERVKIMSDLREGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726 RNVN VI+YAD IT S++L IDET RRREKQL++N++H I PQ +K Sbjct: 543 RNVNGMVIMYADRITDSMRLTIDETNRRREKQLKYNEEHGITPQQIKKGKNLNVFASNAP 602 Query: 727 ------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 EK + +E ++ +I+ D +S+ + + ++ RK M AA L+F Sbjct: 603 TEDSYIEKGATITPRPYIEQESSAHIAADPIVQYMSRPQLEKSIERTRKLMQEAAKKLDF 662 Query: 781 EEAARIRDEIKRLK 794 EAA+ RDE+ +++ Sbjct: 663 IEAAQYRDELLKME 676 >gi|333030109|ref|ZP_08458170.1| UvrABC system protein B [Bacteroides coprosuis DSM 18011] gi|332740706|gb|EGJ71188.1| UvrABC system protein B [Bacteroides coprosuis DSM 18011] Length = 670 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 329/662 (49%), Positives = 460/662 (69%), Gaps = 9/662 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L +G+ S Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSDYKPTGDQPEAIKELTEGVLSDVPGQTLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT SLL R D +VVSSVSCIYG+G+ + ++ ++ G V + L LV Y R Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPADFYNNVIDIEQGKVVNRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ + + RV + ++++ I E P++G I + E+ KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYTDHI-LRVVFWDDEVDSIEEVDPISGATIADYESYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + +A+ I+E+L ++ E+ G+ EA+RL +R+TYD+EML G C Sbjct: 242 YPANLFMTTKESTLSAIHQIEEDLTKQVTYFEEIGKPYEAKRLYERVTYDMEMLRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG P L ++ PED L+ +DESHV+IPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPEDFLIVIDESHVSIPQIRAMYGGDKARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL + G+IVEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELMKSDGVIVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI L ++ R+L+T LTKRMAE+LTEYL ++ Y+HS+V TL Sbjct: 422 DVRPSMNQIDDLMEEIQLRVERQERVLVTTLTKRMAEELTEYLLNHGVKCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G FDVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILL 738 RN++ VI+YAD +T S+Q IDET RRREKQL +N+ HNI PQ +K+ + + V Sbjct: 542 RNIHGMVIMYADKMTDSMQKTIDETNRRREKQLAYNEAHNITPQQIKKARNLAVFGEYHD 601 Query: 739 EDAAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792 E NI+ D +S+ + ++ RK M AA +L+F +AA+ RDE+ + Sbjct: 602 ESGKAYIEPEMPNIAADPVVQYMSRDELAKSIERTRKLMKKAAKDLDFIQAAQYRDELFK 661 Query: 793 LK 794 L+ Sbjct: 662 LE 663 >gi|300727772|ref|ZP_07061155.1| excinuclease ABC, B subunit [Prevotella bryantii B14] gi|299774967|gb|EFI71576.1| excinuclease ABC, B subunit [Prevotella bryantii B14] Length = 679 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 324/672 (48%), Positives = 464/672 (69%), Gaps = 19/672 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AI QL++GI Q+LLGVTGSGKTFTMA VI + +P ++++ Sbjct: 3 FNLTSNYKPTGDQPQAIKQLVEGIEQGVPAQVLLGVTGSGKTFTMANVIAKVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE ID++R Sbjct: 63 HNKTLAAQLYQEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINEDIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D IVVSSVSCIYG+G + + I++LK G +++ E L LV Y R Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKLKKGQIIDRNEFLRKLVDDLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV G++++I ++ +++ RVS + ++I+ I E ++ +I + E +I Sbjct: 183 NDIELHRGNFRVKGETVDIAMAYSDNI-LRVSWWDDEIDSIEEVDSVSFHRIESFEQYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + ++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFITTKEQTEHGIRMIQDDLVKQVDYFNEIGDHIKAQRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D LL VDESHV+IPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQAGDRPYCLLDFFPKDYLLIVDESHVSIPQIGAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+FEE++ L I VSATP ++ELE+ +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFEEFHELLNQAIYVSATPANYELEESEGIVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + R+L+T LTKRMAE+LTEYL N++ Y+HS+V TL Sbjct: 422 EVRPSENQIDDLMDEILTRIHRNERVLITTLTKRMAEELTEYLLNHNVKSAYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RI+I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRIKIMNDLRAGTYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ KVI+YAD IT+S+Q IDET RRR Q+++N++H I PQ + ++I + + E Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETARRRMIQMKYNEEHGITPQQIVKEIKNELASVSNE 601 Query: 740 D--AATTNI---------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 + A T N+ + D L+++K++ + + + + M +AA +L+F + Sbjct: 602 NEPARTRNMDKTNNVYHESEVGTFAADPIVLNMTKEQLEKSIANTTRLMKMAAKDLDFMQ 661 Query: 783 AARIRDEIKRLK 794 AA+ RDEI +L+ Sbjct: 662 AAQYRDEIVKLQ 673 >gi|269104260|ref|ZP_06156956.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae CIP 102761] gi|268160900|gb|EEZ39397.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae CIP 102761] Length = 650 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 296/591 (50%), Positives = 416/591 (70%), Gaps = 1/591 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +DY PSGDQ AIA+L+ G+ S Q+L G+TGSGKTFTMA VI ++RP +++A Sbjct: 6 FILHSDYSPSGDQVEAIAKLVDGVESGASHQVLQGITGSGKTFTMANVIHRLKRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE K FFP N VEYFVSYYD+YQPE Y+P +D +I K+S+INEQ++R+R Sbjct: 66 HNKTLAAQLYSEMKRFFPENHVEYFVSYYDFYQPEVYIPASDRFIRKDSAINEQLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T++L+E+ D IVV+SVS IYG+G E Y + L IG + + + + L QY+R Sbjct: 126 STTKALIEQRDVIVVASVSAIYGLGEPELYRAAQIPLYIGRKINRSQFIEQLTSLQYQRT 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + R TFR GD ++IFP+ E VA RV M ++IE++ P +G+ + +E ++ Sbjct: 186 EKRLERATFRSHGDIVDIFPAESEKVAIRVEMLDDEIEQLYWLDPFSGKTLGALERYRVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + + A I+++L+ R+ +L +E R+ EA RL +R YD+EM++ G C Sbjct: 246 PKTLYAASKDKITKASLLIQKDLEQRVAQLNQENRITEAARLYERTMYDIEMMQQLGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS YL R+P PP TL +Y+P+D LLF+DESHV IPQIS M++GD RK TL EY Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPKDGLLFIDESHVMIPQISAMFKGDQSRKETLIEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F E+ ++P T+ VSATPG++EL + + +VEQIIRPTGL+DP +E Sbjct: 366 GFRLPSAKNNRPLDFNEFEKIKPQTLFVSATPGNYELSKAKTPVVEQIIRPTGLLDPTIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +RS+ Q+ ++ DEI + ++G R L+ LTK+ AE L EY+ E++ +V Y+HS+VKT + Sbjct: 426 VRSSSNQISNLLDEIKIRIEKGERTLVNTLTKKSAESLYEYMQEQSFKVSYLHSDVKTED 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ II LR G+ D+L+GINLLREGLDIPE LVAILDAD GFLRSK +LIQ IGRAAR Sbjct: 486 RVRIIEQLRAGELDILIGINLLREGLDIPEASLVAILDADHAGFLRSKAALIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP-QSVKEKIM 730 N N ILY + +T ++Q AIDE+ RR +Q+++N H INP S++++++ Sbjct: 546 NKNGMAILYGNKVTPAMQQAIDESLDRRSRQIQYNHLHQINPITSIRQELV 596 >gi|260174430|ref|ZP_05760842.1| excinuclease ABC subunit B [Bacteroides sp. D2] gi|293370229|ref|ZP_06616789.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CMC 3f] gi|299146196|ref|ZP_07039264.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_23] gi|315922697|ref|ZP_07918937.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292634726|gb|EFF53255.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CMC 3f] gi|298516687|gb|EFI40568.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_23] gi|313696572|gb|EFS33407.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 676 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 332/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SAT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 SATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ I E P+TG I + KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601 Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D +L E + +T NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 ADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +L+ Sbjct: 662 DELLKLE 668 >gi|60682121|ref|YP_212265.1| excinuclease ABC subunit B [Bacteroides fragilis NCTC 9343] gi|253567095|ref|ZP_04844546.1| excinuclease ABC subunit B [Bacteroides sp. 3_2_5] gi|265764258|ref|ZP_06092826.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_16] gi|81314815|sp|Q5LC24|UVRB_BACFN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|60493555|emb|CAH08342.1| UvrABC SOS-repair system protein B [Bacteroides fragilis NCTC 9343] gi|251944219|gb|EES84728.1| excinuclease ABC subunit B [Bacteroides sp. 3_2_5] gi|263256866|gb|EEZ28212.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_16] gi|301163591|emb|CBW23142.1| UvrABC SOS-repair system protein B [Bacteroides fragilis 638R] Length = 677 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 331/667 (49%), Positives = 461/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + +++++ G ++ + L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV+ +G++I+ I E P++G I E KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ R+L+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQIRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI-DPIL 737 RNVN VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+ + + V + Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGAE 601 Query: 738 LEDA----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 ED ++ NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 TEDTQKGTRAYVEPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +++ Sbjct: 662 DELLKME 668 >gi|53713912|ref|YP_099904.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46] gi|81824991|sp|Q64T09|UVRB_BACFR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|52216777|dbj|BAD49370.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46] Length = 677 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 332/667 (49%), Positives = 461/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + +++++ G ++ + L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV+ +G++I+ I E P++G I E KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + ++ RIL+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQIRIEKEERILVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI-DPIL 737 RNVN VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+ + + V + Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGAE 601 Query: 738 LEDA----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 ED ++ NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 TEDTQKGTRAYVEPSSPNIAADPVVQYMSKTQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +++ Sbjct: 662 DELLKME 668 >gi|317502714|ref|ZP_07960825.1| excision endonuclease subunit UvrB [Prevotella salivae DSM 15606] gi|315666158|gb|EFV05714.1| excision endonuclease subunit UvrB [Prevotella salivae DSM 15606] Length = 683 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 327/676 (48%), Positives = 462/676 (68%), Gaps = 23/676 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +GI Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYKPTGDQPEAIKELTEGIKDGIPAQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D IVVSSVSCIYG+G + + I+++K G ++++ L LV Y R Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTIDRNVFLRKLVDALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RGTFRV GD+I+I ++ +++ RV+ + ++I+ I E +T I ET +I Sbjct: 183 NDIDLQRGTFRVKGDTIDISMAYSDNI-LRVTWWDDEIDSIEEVDNITFHTIERFETYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L R+ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEHAIRMIQDDLVDRVNYFNEIGDSIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GRNPGE P L ++ P+D L+ +DESHV++PQI+ MY GD RK L E Sbjct: 302 SGIENYSRYFDGRNPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+FEE++ L I +SATP ++E+E+ +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFEEFHNLMHQVIYISATPANYEIEEAEGVVVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + R+L+T LTKRMAE+LTEYL I+ Y+HS+V TL Sbjct: 422 EVRPSENQIDDLMDEILTRINRHERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN KVI+YADTIT+S+Q I+ET RRR QL++N++H I P+ +++KI + Sbjct: 542 RNVNGKVIMYADTITESMQKTIEETARRRSIQLKYNEEHYIIPKQIEKKIGSTLAFSSQT 601 Query: 734 --------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 I LE A + D +SK + + + + M AA +L+ Sbjct: 602 NNNGKEDIRQNSKYKDIYLEPEAGA-FAADPIVKRMSKAELEKSIANTTALMKQAAKDLD 660 Query: 780 FEEAARIRDEIKRLKS 795 F +AA+ RDEI RL++ Sbjct: 661 FIQAAQYRDEIIRLQN 676 >gi|304382428|ref|ZP_07364927.1| excision endonuclease subunit UvrB [Prevotella marshii DSM 16973] gi|304336436|gb|EFM02673.1| excision endonuclease subunit UvrB [Prevotella marshii DSM 16973] Length = 675 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 321/670 (47%), Positives = 458/670 (68%), Gaps = 20/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AI QL +G+ +K Q+LLGVTGSGKTFT+A VI M +P +V++ Sbjct: 4 FSLTSRYSPTGDQPEAIRQLTEGLMRGDKAQVLLGVTGSGKTFTVANVIANMNKPTLVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ SINE+IDR+R Sbjct: 64 HNKTLAAQLYEEMKCFFPDNAVEYYVSYYDYYQPEAYLPSTDIYIEKDLSINEEIDRLRL 123 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL R D IVVSSVSCIYG+G + + I+ K G +++ L LV Y R Sbjct: 124 SAVSALLSGRKDVIVVSSVSCIYGMGGPTAMEKSIIHFKRGQKIDRNTFLRQLVDALYTR 183 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI RG FRV GD++++F ++ ++ RVS + ++I+ I E T ++ + + +I Sbjct: 184 NDIAPARGNFRVKGDTVDVFMAYSNNI-LRVSFWDDEIDSIEELDTETYHQLASFDAYQI 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A+++I+++L ++ ++ G L+AQR+++R+ YD+EM++ G C Sbjct: 243 YPANLFVTSKEQTKIAIRHIQDDLVEQIRYFQERGEDLQAQRIKERVEYDMEMIKELGHC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D L+ +DESHV++PQI MY GD RK L + Sbjct: 303 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQICAMYGGDRARKTNLVQ 362 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE+ + I VSATP +EL + G++VEQ+IRPTGL+DP + Sbjct: 363 YGFRLPAAFDNRPLRFEEFQSMIHQVIYVSATPADYELNEAGGVVVEQVIRPTGLLDPTI 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E++ + Q++D+ +EI L ++G R+L+T LTKRMAE+LTEYL +IR Y+HS+V TL Sbjct: 423 EVKPSENQIDDLLNEIQLCTEKGERVLVTTLTKRMAEELTEYLLNHDIRANYIHSDVSTL 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 483 DRVQIMGDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RN++ KVI+YADT+T+S+Q I ET RRR KQ+++N++H+++PQ + ++I + Sbjct: 543 RNIHGKVIMYADTVTESMQRTIAETERRRTKQIQYNEEHHLHPQQIVKEIRNGLRSIHQP 602 Query: 734 --------DPILLEDAATTNISIDAQQLSLSK-KKGKAHLKSLRKQMHLAADNLNFEEAA 784 P + D + ++++ + +K AH + L KQ AA L+F +AA Sbjct: 603 TDKKEQRYAPYIEPDRMISVADPIVKRMTRPQLEKSIAHTQKLMKQ---AAKELDFIQAA 659 Query: 785 RIRDEIKRLK 794 + RDEI +++ Sbjct: 660 QYRDEILKME 669 >gi|298482857|ref|ZP_07001040.1| excinuclease ABC subunit B [Bacteroides sp. D22] gi|298271057|gb|EFI12635.1| excinuclease ABC subunit B [Bacteroides sp. D22] Length = 676 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 331/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ I E P+TG I + KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQKMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601 Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D +L E + +T NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +L+ Sbjct: 662 DELLKLE 668 >gi|295083906|emb|CBK65429.1| Excinuclease ABC subunit B [Bacteroides xylanisolvens XB1A] Length = 676 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 331/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ I E P+TG I + KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601 Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D +L E + +T NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +L+ Sbjct: 662 DELLKLE 668 >gi|255311406|ref|ZP_05353976.1| excinuclease ABC subunit B [Chlamydia trachomatis 6276] gi|255317707|ref|ZP_05358953.1| excinuclease ABC subunit B [Chlamydia trachomatis 6276s] Length = 668 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 328/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EAA+ RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQKFQFDEAAKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|237804937|ref|YP_002889091.1| excinuclease ABC subunit B [Chlamydia trachomatis B/TZ1A828/OT] gi|231273237|emb|CAX10150.1| excinuclease ABC subunit B [Chlamydia trachomatis B/TZ1A828/OT] Length = 668 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 328/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EAA+ RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|237714491|ref|ZP_04544972.1| excinuclease ABC subunit B [Bacteroides sp. D1] gi|262406355|ref|ZP_06082904.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_22] gi|294643236|ref|ZP_06721062.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CC 2a] gi|294806429|ref|ZP_06765270.1| excinuclease ABC, B subunit [Bacteroides xylanisolvens SD CC 1b] gi|229445260|gb|EEO51051.1| excinuclease ABC subunit B [Bacteroides sp. D1] gi|262355058|gb|EEZ04149.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_22] gi|292641359|gb|EFF59551.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CC 2a] gi|294446292|gb|EFG14918.1| excinuclease ABC, B subunit [Bacteroides xylanisolvens SD CC 1b] Length = 676 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 330/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 +++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ +++ RV+ +G++I+ + E P+TG I + KI Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGVEEVDPITGVTIAPFDAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733 RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601 Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 D +L E + +T NI+ D +SK + + ++ RK M AA L F EAA+ R Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661 Query: 788 DEIKRLK 794 DE+ +L+ Sbjct: 662 DELLKLE 668 >gi|15605315|ref|NP_220101.1| excinuclease ABC subunit B [Chlamydia trachomatis D/UW-3/CX] gi|237803015|ref|YP_002888209.1| excinuclease ABC subunit B [Chlamydia trachomatis B/Jali20/OT] gi|6226295|sp|O84590|UVRB_CHLTR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|3329029|gb|AAC68188.1| Exinuclease ABC Subunit B [Chlamydia trachomatis D/UW-3/CX] gi|231274249|emb|CAX11043.1| excinuclease ABC subunit B [Chlamydia trachomatis B/Jali20/OT] gi|296436120|gb|ADH18294.1| excinuclease ABC subunit B [Chlamydia trachomatis G/9768] gi|296437980|gb|ADH20141.1| excinuclease ABC subunit B [Chlamydia trachomatis G/11074] gi|297140482|gb|ADH97240.1| excinuclease ABC subunit B [Chlamydia trachomatis G/9301] gi|297748716|gb|ADI51262.1| Excinuclease ABC subunit B [Chlamydia trachomatis D-EC] gi|297749596|gb|ADI52274.1| Excinuclease ABC subunit B [Chlamydia trachomatis D-LC] Length = 668 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 328/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EAA+ RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|269302592|gb|ACZ32692.1| excinuclease ABC, B subunit [Chlamydophila pneumoniae LPCoLN] Length = 657 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 325/655 (49%), Positives = 433/655 (66%), Gaps = 8/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + P GDQP AIA+L G+ ++ K Q+LLG TGSGKTFT+A V+ + P +V+A Sbjct: 3 FQLHAPFAPCGDQPEAIARLSAGVRNQVKSQVLLGTTGSGKTFTIANVVANVNLPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP+NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 63 HNKTLAAQLYQEFREFFPNNAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y+ M + L++G + L + LVK Y+ Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALVLEVGKEYPRNILTAQLVKMHYQAS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 I R FR G I+IFP++ ++A R+ + + I PLT +V + +Y Sbjct: 183 PIP-QRSAFRERGSVIDIFPAYESELALRLEFLNDTLTSIEYSDPLTMIPKESVSSATLY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P A++ I+EEL+ R+ + R +E R+ R T+D+EM++ G C+ Sbjct: 242 PGSHYVIPEAIREQAIRTIQEELEERMAFFDD--RPIEKDRIFHRTTHDIEMIKEIGFCK 299 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PG PP L +Y PED LL +DESH T+PQI MYRGD RK +L EY Sbjct: 300 GIENYSRHFTGAPPGAPPTCLLDYFPEDFLLVIDESHQTLPQIRAMYRGDQSRKQSLVEY 359 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ G IV+QIIRPTG+ DP E Sbjct: 360 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTEVQESSGHIVQQIIRPTGIPDPMPE 419 Query: 561 IRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 IR A QV+D+ +EI L +Q+ +IL+ +TK++AED+ +L E I Y+HS ++T Sbjct: 420 IRPATGQVDDLLEEIRLRLSQKHEKILVISITKKLAEDMAGFLSELEIPAAYLHSGIETA 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +I+ DLR G DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRAA Sbjct: 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KVI YAD T+SI+ + ET RRR+ QL++NK+HNI P+ + + I +PIL Sbjct: 540 RNINGKVIFYADQKTRSIEETLRETERRRQIQLDYNKEHNIVPKPIIKAIFA--NPIL-- 595 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + S Q LSK+ + +K M AA F EAA+ RD ++ K Sbjct: 596 QTSKDSESPKESQRPLSKEDLEEQIKKYEALMQRAAKEFRFNEAAKYRDAMQACK 650 >gi|255009580|ref|ZP_05281706.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12] gi|313147357|ref|ZP_07809550.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12] gi|313136124|gb|EFR53484.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12] Length = 677 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 329/669 (49%), Positives = 458/669 (68%), Gaps = 18/669 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FELTSAYKPTGDQPEAIAQLTEGVLEGIPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYGEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + +++++ G ++ + L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYDNVIEIERGRTINRNVFLRRLVDSLYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV+ +G++I+ I E P++G I E KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + A+ I+++L ++ E G+ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ MDNRPL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPII 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI L ++ R+L+T LTKRMAE+LTEYL N+R Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEREERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726 RNVN VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLAVFGNGNE 601 Query: 727 -EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 E+ + + + ++ NI+ D +SK + + ++ RK M AA L F EAA+ Sbjct: 602 MEETQKATRAYV--EPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQ 659 Query: 786 IRDEIKRLK 794 RDE+ +++ Sbjct: 660 YRDELLKME 668 >gi|15618710|ref|NP_224996.1| excinuclease ABC subunit B [Chlamydophila pneumoniae CWL029] gi|15836334|ref|NP_300858.1| excinuclease ABC subunit B [Chlamydophila pneumoniae J138] gi|16752239|ref|NP_445607.1| excinuclease ABC subunit B [Chlamydophila pneumoniae AR39] gi|33242161|ref|NP_877102.1| excinuclease ABC subunit B [Chlamydophila pneumoniae TW-183] gi|6831709|sp|Q9Z7A5|UVRB_CHLPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|4377112|gb|AAD18939.1| Exinuclease ABC Subunit B [Chlamydophila pneumoniae CWL029] gi|7189983|gb|AAF38842.1| excinuclease ABC, subunit B [Chlamydophila pneumoniae AR39] gi|8979175|dbj|BAA99009.1| exinuclease ABC subunit B [Chlamydophila pneumoniae J138] gi|33236672|gb|AAP98759.1| excinuclease ABC chain B [Chlamydophila pneumoniae TW-183] Length = 657 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 325/655 (49%), Positives = 433/655 (66%), Gaps = 8/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + P GDQP AIA+L G+ ++ K Q+LLG TGSGKTFT+A V+ + P +V+A Sbjct: 3 FQLHAPFAPCGDQPEAIARLSAGVRNQVKSQVLLGTTGSGKTFTIANVVANVNLPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP+NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 63 HNKTLAAQLYQEFREFFPNNAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y+ M + L++G + L + LVK Y+ Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALVLEVGKEYPRNILTAQLVKMHYQAS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 I R FR G I+IFP++ ++A R+ + + I PLT +V + +Y Sbjct: 183 PIP-QRSAFRERGSVIDIFPAYESELALRLEFLNDTLTSIEYSDPLTMIPKESVPSATLY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYV P A++ I+EEL+ R+ + R +E R+ R T+D+EM++ G C+ Sbjct: 242 PGSHYVIPEAIREQAIRTIQEELEERMAFFDD--RPIEKDRIFHRTTHDIEMIKEIGFCK 299 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PG PP L +Y PED LL +DESH T+PQI MYRGD RK +L EY Sbjct: 300 GIENYSRHFTGAPPGAPPTCLLDYFPEDFLLIIDESHQTLPQIRAMYRGDQSRKQSLVEY 359 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ G IV+QIIRPTG+ DP E Sbjct: 360 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTEVQESSGHIVQQIIRPTGIPDPMPE 419 Query: 561 IRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 IR A QV+D+ +EI L +Q+ +IL+ +TK++AED+ +L E I Y+HS ++T Sbjct: 420 IRPATGQVDDLLEEIRLRLSQKHEKILVISITKKLAEDMAGFLSELEIPAAYLHSGIETA 479 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +I+ DLR G DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRAA Sbjct: 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KVI YAD T+SI+ + ET RRR+ QL++NK+HNI P+ + + I +PIL Sbjct: 540 RNINGKVIFYADQKTRSIEETLRETERRRQIQLDYNKEHNIVPKPIIKAIFA--NPIL-- 595 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + S Q LSK+ + +K M AA F EAA+ RD ++ K Sbjct: 596 QTSKDSESPKESQRPLSKEDLEEQIKKYEALMQRAAKEFRFNEAAKYRDAMQACK 650 >gi|193222362|emb|CAL62189.2| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) [Herminiimonas arsenicoxydans] Length = 658 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 300/589 (50%), Positives = 409/589 (69%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+LL I Q L G+TGSGKTFTMA VI ++RP +++A Sbjct: 6 FILHSSYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQLY E K+FFP NAVEYFVSYYDY+QPE Y+P TD +I K+S+IN+ ++R+R Sbjct: 66 PNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D IVV+SVS IYG+G E+Y + + L G + Q+EL+ L QY R Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLNQRELIRRLALLQYDRT 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + R TFR GD I+IFP+ E A RV + + + + P+TG+ + ++ + Sbjct: 186 ERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLDPVTGKTLGAIDHYLVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + + P +++A K I +++ R+ EL + RL+EA RL +RIT+D+EM+ G C Sbjct: 246 PKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENYS Y + R+P PP TL +Y+P+D LLFVDESHV +PQIS MYRGD RK TL +Y Sbjct: 306 GMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKETLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F E+ ++P TI VSATPG +EL + +VEQ+IRPTGL+DP VE Sbjct: 366 GFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRVVEQVIRPTGLLDPKVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A ++D+ EI+ ++ R+L+T LTK AE+LT++L + IR RYMHS++K + Sbjct: 426 VRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSDIKAED 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII LR G+FDVL+GI+LLREGLDIPE LVAILDAD+ GFLRS +LIQ IGR AR Sbjct: 486 RVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 N N K ILYAD +T +++ AIDET RRR+ Q+ N+++ I+P S K+ Sbjct: 546 NENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPASSVRKL 594 >gi|255348968|ref|ZP_05380975.1| excinuclease ABC subunit B [Chlamydia trachomatis 70] gi|255503507|ref|ZP_05381897.1| excinuclease ABC subunit B [Chlamydia trachomatis 70s] gi|255507185|ref|ZP_05382824.1| excinuclease ABC subunit B [Chlamydia trachomatis D(s)2923] gi|289525631|emb|CBJ15109.1| excinuclease ABC subunit B [Chlamydia trachomatis Sweden2] gi|296435193|gb|ADH17371.1| excinuclease ABC subunit B [Chlamydia trachomatis E/150] gi|296438912|gb|ADH21065.1| excinuclease ABC subunit B [Chlamydia trachomatis E/11023] Length = 668 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 327/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ E+ R +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAIREQAIRTIREELEQRMLFFEE--RPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAAAYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNLDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EAA+ RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|76789323|ref|YP_328409.1| excinuclease ABC subunit B [Chlamydia trachomatis A/HAR-13] gi|90110880|sp|Q3KLB1|UVRB_CHLTA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|76167853|gb|AAX50861.1| excinuclease ABC subunit B [Chlamydia trachomatis A/HAR-13] Length = 668 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 327/665 (49%), Positives = 435/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EA + RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAVKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|296437049|gb|ADH19219.1| excinuclease ABC subunit B [Chlamydia trachomatis G/11222] Length = 668 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 327/665 (49%), Positives = 435/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA V + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVTANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ DP E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EAA+ RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|291557561|emb|CBL34678.1| Excinuclease ABC subunit B [Eubacterium siraeum V10Sc8a] Length = 572 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 295/546 (54%), Positives = 391/546 (71%), Gaps = 2/546 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++++Y P GDQP AI L G+ +K Q+LLGVTGSGKTFTMA +IE + RP +++A Sbjct: 4 FVLKSNYKPMGDQPQAIDSLANGVLDGDKEQVLLGVTGSGKTFTMANIIEKVNRPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD YIEK+S+IN++IDR+RH Sbjct: 64 HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDAYIEKDSAINDEIDRLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+V+SVSCIY +GS E Y + ++ ++ G + +++ LV+ QY+R Sbjct: 124 SATAALAERRDVIIVASVSCIYSLGSPEDYRENMLSIREGQERSRDDIIKRLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPS-HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ IR FRV GD +E+FP+ D A R+ FG++I+ ISE +TG+ R + I Sbjct: 184 DMNFIRNKFRVRGDVLEVFPAGSTSDKAIRIEFFGDEIDRISEIDIVTGEVKRRFSHVAI 243 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + SHY+ + L ++ I+ E++ R+ +L+EAQR+EQR YD+EML G+C Sbjct: 244 FPASHYIVSKARLENSLTEIENEMEERVKFFTDNHKLIEAQRIEQRTRYDMEMLREIGTC 303 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 + +ENYSR L GR PG P TL + P+D L+F+DESHVT+PQ+ GMY GDF RK L + Sbjct: 304 KGVENYSRVLAGRAPGSSPITLMHHFPKDFLMFIDESHVTLPQVRGMYGGDFARKKNLVD 363 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRP+ F+E+ + I VSATPG +E EQ+IRPTGL+DP + Sbjct: 364 YGFRLPSAYDNRPMNFDEFTSMINQVIYVSATPGEYEKSHAVN-TAEQVIRPTGLLDPII 422 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 EI+ Q+ED+Y EIN ++G +L+T LTK+MAEDLT Y + +++RYMH ++ ++ Sbjct: 423 EIKPVAGQIEDLYSEINERTKKGECVLITTLTKKMAEDLTAYYEKLGVKIRYMHHDIDSI 482 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+EIIRDLR+ FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+TSLIQTIGRAA Sbjct: 483 ERMEIIRDLRMHVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 542 Query: 680 RNVNSK 685 RN + Sbjct: 543 RNAEGQ 548 >gi|281422445|ref|ZP_06253444.1| excinuclease ABC subunit B [Prevotella copri DSM 18205] gi|281403508|gb|EFB34188.1| excinuclease ABC subunit B [Prevotella copri DSM 18205] Length = 681 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 325/674 (48%), Positives = 454/674 (67%), Gaps = 22/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL +G+ + Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKITSKYKPTGDQPQAIRQLTEGVLEGDPAQVLLGVTGSGKTFTVANVIANVGKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYQEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D IVVSSVSCIYG+G + + I+++ G +++ E L LV Y R Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQENIIKIHRGQRLDRNEFLRKLVDALYIR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV G++++IF ++ D RV+ + ++I+ I E LT ++ + E +I Sbjct: 183 NDIELQRGNFRVKGETVDIFMAY-SDHVLRVTWWDDEIDSIEEVDSLTYHRLASFEDYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + +A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTTKEQQESAIRRIQDDLVKQVEFFKSIGDGIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR+ GE P L ++ P+D LL VDESHV+IPQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRHEGERPYCLLDFFPKDFLLVVDESHVSIPQIGAMYGGDRARKKNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+FEE++ L P I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFEEFHDLIPQAIYVSATPADYELREAEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + R+L+T LTKRMAE+LTE+L N++ Y+HS+V TL Sbjct: 422 EVRPSENQIDDLLDEILTRTHRNERVLITTLTKRMAEELTEFLLNHNVKAAYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YAD IT S+Q IDET RRR QL++N H I P+ + + I + P E Sbjct: 542 RNVNGKVIMYADNITDSMQKTIDETARRRSIQLKYNADHGITPKQIVKAITSAL-PTSKE 600 Query: 740 DAA-------------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 + A + D S+SK++ + + + M AA +L+F Sbjct: 601 EGAKIVPMGAEGSKPRVYVEPESAAFVADPIVRSMSKEELEKSIANTTALMKQAAKDLDF 660 Query: 781 EEAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 661 MQAAQYRDEIIRLQ 674 >gi|325851994|ref|ZP_08171077.1| excinuclease ABC, B subunit [Prevotella denticola CRIS 18C-A] gi|325484550|gb|EGC87466.1| excinuclease ABC, B subunit [Prevotella denticola CRIS 18C-A] Length = 681 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 324/681 (47%), Positives = 465/681 (68%), Gaps = 35/681 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D IVVSSVSCIYG+G+ + + ++ ++ G +V++ + L LV Y R Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ ++V R++ + ++I+ I E + +I + + +I Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + +A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTESAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + A++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V L Sbjct: 422 EVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAGL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RI II DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ KVI+YAD IT+S+Q IDET RRR KQL++N++H+I P+ + I + Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTL------ 595 Query: 740 DAATTNISIDAQQLSLSKKKGKAHL---------------KSLRKQ-----------MHL 773 A + + +Q S+++K G+A++ K R Q M Sbjct: 596 -PAGSEGNTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMSRAQLEKSIENTTALMKQ 654 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA +L+F +AA+ RDEI RL+ Sbjct: 655 AAKDLDFLQAAQYRDEIIRLQ 675 >gi|166154801|ref|YP_001654919.1| excinuclease ABC subunit B [Chlamydia trachomatis 434/Bu] gi|166155676|ref|YP_001653931.1| excinuclease ABC subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336077|ref|ZP_07224321.1| excinuclease ABC subunit B [Chlamydia trachomatis L2tet1] gi|165930789|emb|CAP04286.1| excinuclease ABC subunit B [Chlamydia trachomatis 434/Bu] gi|165931664|emb|CAP07240.1| excinuclease ABC subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 668 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 327/665 (49%), Positives = 435/665 (65%), Gaps = 19/665 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + P GDQP AI +L +GI Q+LLG TGSGKTFTMA VI + P +V+A Sbjct: 10 FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 70 HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G + +L S LV+ Y+ Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R FR G I+IF ++ D+A R+ + + I PLT +I +Y Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ R++ EGR +E +RL QR T+D+EM++ G C+ Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PGEPP L +Y P+D LL +DESH T+PQ+ MYRGD RK +L EY Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG E+++ +G I+EQIIRPTG+ D E Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDLLPE 426 Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 IR A+ Q++D+ +EI +Q LR IL+ +TK++AED+ +L E I Y+HS Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAAAYLHSG 482 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++T ER +I+ DLRLG DVL+G+NLLREG+D+PE LVAILDADKEGFLRS SLIQ Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN++ KVI YAD IT S+ + ET RRR+ QL++N++H I PQ + + I+ +P Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 I E A + Q S K+ +A +K+ + M+ AA F+EAA+ RD + K Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655 Query: 796 SPYFQ 800 FQ Sbjct: 656 QLLFQ 660 >gi|239618098|ref|YP_002941420.1| excinuclease ABC, B subunit [Kosmotoga olearia TBF 19.5.1] gi|259710329|sp|C5CFR8|UVRB_KOSOT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|239506929|gb|ACR80416.1| excinuclease ABC, B subunit [Kosmotoga olearia TBF 19.5.1] Length = 667 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 324/659 (49%), Positives = 441/659 (66%), Gaps = 7/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F ++ + P GDQP AI +L++G+ ++ Q LLGVTGSGKTFTMA +IE +Q+PA+V++ Sbjct: 3 FNLKAPFEPRGDQPEAITRLVEGLRRGDRFQTLLGVTGSGKTFTMASIIERVQQPALVIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQLY EF++FFP N VE F+SYYDYYQPEAY+P D YIEK++ IN+ + RMR Sbjct: 63 PNKALVAQLYREFRSFFPENRVELFISYYDYYQPEAYIPTKDLYIEKDADINDLLARMRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +S+L R D +VV+SVS IY G + ++ + L+IG + + EL L QY R Sbjct: 123 SALKSVLTRKDVVVVASVSAIYASGDPRDFQELNISLEIGQRIPRNELALKLASIQYSRS 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + G F + GD +EIFP + ED R+ F ++IE I F P+ + + + I IY Sbjct: 183 EDISSGGVFHLRGDVVEIFPPY-EDYGIRIYFFDDEIERIISFDPMNRKTLEEFDRIIIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +VT + A+K I+ +L++R ELEK G+ LEAQRL+QR YDLEML T G C Sbjct: 242 PAKEFVTTEEKIKHAVKEIERDLELRAKELEKNGKYLEAQRLKQRTLYDLEMLTTLGYCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-FVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PGEPP T+ +Y + ++ F+DESH+T+PQI MY GD RK L E Sbjct: 302 GIENYSRYFDGRKPGEPPYTILDYFDKSEMIVFLDESHITVPQIRAMYHGDHSRKKNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLPS DNRPL FEE+ I VSATPG +EL IVEQ+IRPTGL+DP V Sbjct: 362 YGFRLPSAFDNRPLTFEEFLESVGQIIFVSATPGDYEL-SVSTQIVEQLIRPTGLIDPEV 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++ + QV+D +E+ ++G R L+TVLTK+ AE + YL E IR Y+HSE+ T+ Sbjct: 421 VVKPTQNQVDDFIEEVQKVIERGERALVTVLTKKAAEMFSAYLNELGIRAEYLHSELDTV 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+E+++ LR G DV+VG+NLLREGLD+PE LVAI+DADKEGFLRS+T+LIQTIGRAA Sbjct: 481 ERVEVLKKLREGSVDVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTLIQTIGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN+N KV+LYAD IT S++ AI+ET RRR KQL +N +H+I P+S+ + + E I + Sbjct: 541 RNINGKVLLYADRITNSMKRAIEETNRRRMKQLMYNIEHDIKPESIVKPLYENIFEEFAD 600 Query: 740 DAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + I+ +D + + +L L ++M A+ L +E+AA +RDE+ R+K Sbjct: 601 NEEKIEIAKNTYLDGILALKEDLEAEEYLALLEEEMWRASSELRYEDAAMLRDEMLRIK 659 >gi|327312372|ref|YP_004327809.1| excinuclease ABC subunit B [Prevotella denticola F0289] gi|326944025|gb|AEA19910.1| excinuclease ABC, B subunit [Prevotella denticola F0289] Length = 681 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 324/681 (47%), Positives = 464/681 (68%), Gaps = 35/681 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D IVVSSVSCIYG+G+ + + ++ ++ G +V++ + L LV Y R Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ ++V R++ + ++I+ I E + +I + + +I Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTENAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + A++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V L Sbjct: 422 EVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAGL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RI II DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ KVI+YAD IT+S+Q IDET RRR KQL++N++H+I P+ + I + Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTL------ 595 Query: 740 DAATTNISIDAQQLSLSKKKGKAHL---------------KSLRKQ-----------MHL 773 A + + +Q S+++K G+A++ K R Q M Sbjct: 596 -PAGSEGNTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMNRAQLVKSIENTTALMKQ 654 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA +L+F +AA+ RDEI RL+ Sbjct: 655 AAKDLDFLQAAQYRDEIIRLQ 675 >gi|303237176|ref|ZP_07323746.1| excinuclease ABC, B subunit [Prevotella disiens FB035-09AN] gi|302482563|gb|EFL45588.1| excinuclease ABC, B subunit [Prevotella disiens FB035-09AN] Length = 680 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 323/673 (47%), Positives = 467/673 (69%), Gaps = 19/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL +GI +K Q+LLGVTGSGKTFTMA VI + +P ++++ Sbjct: 3 FELTSKYKPTGDQPEAIRQLTEGIERGDKSQVLLGVTGSGKTFTMANVIANVGKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPHNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D +VVSSVSC+YG+G + +++LK G +++ E L L+ Y R Sbjct: 123 SAVSSLLSGRKDVVVVSSVSCLYGMGGPVAMKDSVIRLKKGQIIDRNEFLRRLINALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ +++ R++ + ++I+ I E ++ ++ E +I Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSDNI-LRITWWDDEIDAIEEVDAVSYHRLGTFEAYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L++++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTTKEQTEGAIRQIQDDLRLQIDFFNEIGDNIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P D+L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGREAGQRPYCLLDFFPSDNLIMIDESHVSVPQISAMYGGDRARKKNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLP+ DNRPLRFEE++ L I VSATP ++ELE+ +G++VEQ+IRPTGL+DP + Sbjct: 362 FGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPANFELEEAEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++++ +EI + A++ R+L+T LTKRMAE+LTEYL +R Y+HS+V +L Sbjct: 422 EVRPSENQIDNLMEEILIRAEKDERVLVTTLTKRMAEELTEYLLNHEVRTTYIHSDVASL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++II D R+G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIINDFRIGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME-------- 731 RNVN +VI+YAD IT S+Q IDET RRREKQL++N++++I P + I + Sbjct: 542 RNVNGRVIMYADKITDSMQKTIDETARRREKQLKYNEENHITPTQIVRTIKDTLPSSENS 601 Query: 732 -VIDPI--------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 I PI E T+I D + ++K + + +++ M AA NL+F + Sbjct: 602 ATIVPINKGKAPQAYSEPTFETSIVADPIVMKMTKAQLEKSIQNTTLLMQEAAKNLDFLQ 661 Query: 783 AARIRDEIKRLKS 795 AA+ RDEI RL++ Sbjct: 662 AAQYRDEILRLQA 674 >gi|288803851|ref|ZP_06409277.1| excinuclease ABC subunit B [Prevotella melaninogenica D18] gi|288333685|gb|EFC72134.1| excinuclease ABC subunit B [Prevotella melaninogenica D18] Length = 681 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 326/681 (47%), Positives = 464/681 (68%), Gaps = 35/681 (5%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYKPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPVTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D IVVSSVSCIYG+G+ + + ++ +K G +++ + L LV Y R Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPIAMKENVISIKKGQVIDRNDFLRRLVDALYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ ++V R++ + ++I+ I E + ++ + ++ Sbjct: 183 NDIELQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDSIEEVDAVDFHRLATFDAYEV 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDLVKQVDFFTEIGDNIKAQRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGREAGMRPYCLLDFFPEDYLMVIDESHVSVPQISAMYGGDRARKKNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDLIHQIIYVSATPADFELAESEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + A++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V +L Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RI+II DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRIKIINDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YAD IT+S+Q IDET RRR KQL++N+++NI P + + I + P+ Sbjct: 542 RNVNGKVIMYADNITESMQKTIDETMRRRTKQLKYNEENNITPTQIVKAIKGTL-PV--- 597 Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-----------------------KSLRKQ---MHL 773 +N++ AQ S+S+ G+A++ KS+ M Sbjct: 598 -GGESNLT--AQTASISRNVGQAYVEPNNGVLFAADPIVAKMSKAQLEKSIANTTILMKQ 654 Query: 774 AADNLNFEEAARIRDEIKRLK 794 AA +L+F +AA+ RDEI RL+ Sbjct: 655 AAKDLDFLQAAQYRDEIIRLQ 675 >gi|212693421|ref|ZP_03301549.1| hypothetical protein BACDOR_02937 [Bacteroides dorei DSM 17855] gi|212664065|gb|EEB24639.1| hypothetical protein BACDOR_02937 [Bacteroides dorei DSM 17855] Length = 677 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 326/668 (48%), Positives = 462/668 (69%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL +G+ R Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELISEYQPTGDQPEAIAQLTEGVLERVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV + ++I+ I E P++G ++ + KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L + + E+EG++ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GRN G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFR+ S DNRPL+FEE+ L I VSATP +EL + +GIIVEQ+IRPTGL+DP + Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ +LR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILL 738 RN+N KVI+YAD +T S++ IDET RRREKQL +N++H I P+ + + + ++ Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601 Query: 739 EDAATT------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 E A TT ++ D ++K + + ++ RK M AA L F EAA+ Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 RDE+ +L+ Sbjct: 662 RDELLKLE 669 >gi|325270752|ref|ZP_08137343.1| excision endonuclease subunit UvrB [Prevotella multiformis DSM 16608] gi|324986868|gb|EGC18860.1| excision endonuclease subunit UvrB [Prevotella multiformis DSM 16608] Length = 696 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 318/674 (47%), Positives = 462/674 (68%), Gaps = 21/674 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 18 FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIADVNKPTLILS 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 78 HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 137 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D IVVSSVSCIYG+G+ + + ++ ++ G +V++ + L LV Y R Sbjct: 138 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 197 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ ++V R++ + ++I+ I E + +I + + +I Sbjct: 198 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 256 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + +A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 257 YPANLFVTSKEQTESAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 316 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G+ P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 317 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 376 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 377 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKESEGVVVEQLIRPTGLLDPEI 436 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ +EI + A++ R+L+T LTKRMAE+LTEYL + +IR Y+HS+V +L Sbjct: 437 DVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLDHDIRTAYIHSDVASL 496 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++II DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 497 DRVKIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 556 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735 RNV+ KVI+YAD IT+S+Q IDET RRR KQL++N++H+I P+ + I + Sbjct: 557 RNVHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTLPTGGEG 616 Query: 736 ---------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780 +E + D +S+ + + +++ M AA NL+F Sbjct: 617 NAAAPADSAARRTARAYVEPGDGMLFAADPVIAKMSRAQLEKSIENTTALMKQAAKNLDF 676 Query: 781 EEAARIRDEIKRLK 794 +AA+ RDEI RL+ Sbjct: 677 LQAAQYRDEIIRLQ 690 >gi|148270182|ref|YP_001244642.1| excinuclease ABC subunit B [Thermotoga petrophila RKU-1] gi|170288855|ref|YP_001739093.1| excinuclease ABC, B subunit [Thermotoga sp. RQ2] gi|281412475|ref|YP_003346554.1| excinuclease ABC, B subunit [Thermotoga naphthophila RKU-10] gi|189038009|sp|A5ILJ3|UVRB_THEP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238688838|sp|B1LAR2|UVRB_THESQ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|147735726|gb|ABQ47066.1| Excinuclease ABC subunit B [Thermotoga petrophila RKU-1] gi|170176358|gb|ACB09410.1| excinuclease ABC, B subunit [Thermotoga sp. RQ2] gi|281373578|gb|ADA67140.1| excinuclease ABC, B subunit [Thermotoga naphthophila RKU-10] Length = 664 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 324/659 (49%), Positives = 455/659 (69%), Gaps = 10/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G++ + Q LLGVTGSGKTFTMA VI + RPA+V++ Sbjct: 2 FKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVIS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P D YIEK + IN+ I RMR Sbjct: 62 PNKTLAAQLYQEFKAFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S +S+ R D +VV+SVSCIY G + +M + L +GD ++ EL L + Y+R Sbjct: 122 STLKSVRTRRDVVVVASVSCIYATGDPNDFDRMNINLAVGDRIDVLELAERLARIGYQRT 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G FR+ GD++EI+P++ +D R+ FG++++ I+ + +++ I IY Sbjct: 182 EDVSLSGCFRLKGDTVEIYPTY-QDEGIRIEFFGDEVDSITLIDRFNRTTLEHLDKIIIY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++T L A++ I+EEL RL EL+K+G++LE +RL+QR D+E+LET G C Sbjct: 241 PAVEFITTEEKLKRAVESIREELNERLSELKKQGKILEYERLKQRTLNDIELLETMGYCP 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y +D ++F+DESH+T+PQ+ MY GD RK L EY Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDKDFIVFIDESHITVPQLRAMYNGDRSRKKNLVEY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL + + VEQIIRPTGLVDP VE Sbjct: 361 GFRLPSAYDNRPLTFEEFLKKTGQIIFVSATPGDFELSISEQV-VEQIIRPTGLVDPEVE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ +EI ++G R L+TVLTK+ AE L+E+L E IR Y+HSE+ +E Sbjct: 420 VRPTAGQVDDLVNEIVKVKERGERALVTVLTKKTAELLSEHLTELGIRSLYLHSELDAIE 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E+++ LR G DV+VG+NLLREGLD+PE LVAI+DAD EGFLRS+T+LIQ IGR AR Sbjct: 480 RVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADVEGFLRSETTLIQIIGRTAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPILL- 738 N+N KVI+YAD IT +++ AI+ET RRR QLE+NKKH I P+SV + + +EV + ++ Sbjct: 540 NINGKVIMYADRITNAMKRAIEETNRRRRIQLEYNKKHGITPRSVIKPLEIEVFEQFMVK 599 Query: 739 ---EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E T +I + +LS ++ ++ L ++M+ AA L +E+AA +RDE+ R++ Sbjct: 600 EEPERYGDTVKNIFEMKKTLSPEE---YMAVLEEEMYRAASELRYEDAAALRDELFRIR 655 >gi|302346857|ref|YP_003815155.1| excinuclease ABC, B subunit [Prevotella melaninogenica ATCC 25845] gi|302150443|gb|ADK96704.1| excinuclease ABC, B subunit [Prevotella melaninogenica ATCC 25845] Length = 681 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 329/675 (48%), Positives = 460/675 (68%), Gaps = 23/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYKPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPVTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA SLL R D IVVSSVSCIYG+G+ + ++ +K G +++ + L LV Y R Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPIAMKGNVISIKKGQVIDRNDFLRRLVDALYMR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ ++V R++ + ++I+ I E + ++ + +I Sbjct: 183 NDIELQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDSIEEVDAVDFHRLATFDAYEI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDLVKQVDFFTEIGDNIKAQRIKERVEYDIEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR G P L ++ PED L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGREAGMRPYCLLDFFPEDYLMVIDESHVSVPQISAMYGGDRARKKNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ L I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDLIHQIIYVSATPADFELAESEGVVVEQVIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI + A++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V +L Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +RI+II DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRIKIINDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YAD IT+S+Q IDET RRR KQL++N+++NI P + + I + P+ E Sbjct: 542 RNVNGKVIMYADNITESMQKTIDETMRRRTKQLKYNEENNITPTQIVKAIKGTL-PVGGE 600 Query: 740 D---AATTNISIDAQQLSLSKKKG-------------KAHL-KSLRKQ---MHLAADNLN 779 A T +I + Q + G KA L KS+ M AA +L+ Sbjct: 601 SNLTAETASIGRNVGQAYVEPNNGVLFAADPIVAKMSKAQLEKSIANTTILMKQAAKDLD 660 Query: 780 FEEAARIRDEIKRLK 794 F +AA+ RDEI RL+ Sbjct: 661 FLQAAQYRDEIIRLQ 675 >gi|15644506|ref|NP_229558.1| excinuclease ABC subunit B [Thermotoga maritima MSB8] gi|8134790|sp|Q9X282|UVRB_THEMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|4982339|gb|AAD36825.1|AE001814_7 excinuclease ABC, subunit B [Thermotoga maritima MSB8] Length = 664 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 324/659 (49%), Positives = 455/659 (69%), Gaps = 10/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI +L++G++ + Q LLGVTGSGKTFTMA VI + RPA+V++ Sbjct: 2 FKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVIS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P D YIEK + IN+ I RMR Sbjct: 62 PNKTLAAQLYQEFKTFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S +S+ R D +VV+SVSCIY G + +M + L +GD ++ EL L + Y+R Sbjct: 122 STLKSVRTRRDVVVVASVSCIYATGDPNDFDRMNINLAVGDRIDVLELAERLARIGYQRT 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G FR+ GD++EI+P++ +D R+ FG++++ I+ + +++ I IY Sbjct: 182 EDVSLSGCFRLKGDTVEIYPTY-QDEGIRIEFFGDEVDSITLIDRFNRTTLEHLDKIIIY 240 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 ++T L A++ I+EEL RL EL+K+G++LE +RL+QR D+E+LET G C Sbjct: 241 PAVEFITTEEKLKRAVESIREELNERLSELKKQGKILEYERLKQRTLNDIELLETMGYCP 300 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ GR PGEPP TL +Y +D ++F+DESH+T+PQ+ MY GD RK L EY Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDKDFIVFIDESHITVPQLRAMYNGDRSRKKNLVEY 360 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL FEE+ I VSATPG +EL + + VEQIIRPTGLVDP VE Sbjct: 361 GFRLPSAYDNRPLTFEEFLKKTGQIIFVSATPGDFELSISEQV-VEQIIRPTGLVDPEVE 419 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R QV+D+ +EI ++G R L+TVLTK+ AE L+E+L E IR Y+HSE+ +E Sbjct: 420 VRPTAGQVDDLVNEIVKVKERGERALVTVLTKKTAELLSEHLTELGIRSLYLHSELDAIE 479 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E+++ LR G DV+VG+NLLREGLD+PE LVAI+DAD EGFLRS+T+LIQ IGR AR Sbjct: 480 RVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADVEGFLRSETTLIQIIGRTAR 539 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPILL- 738 NVN KVI+YAD IT +++ AI+ET RRR QLE+N+KH I P+SV + + +EV + ++ Sbjct: 540 NVNGKVIMYADRITNAMKRAIEETNRRRRIQLEYNRKHGITPRSVIKPLEIEVFEQFMVK 599 Query: 739 ---EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 E T +I + +LS ++ ++ L ++M+ AA L +E+AA +RDE+ R++ Sbjct: 600 EEPERYGDTVKNIFEMKKTLSPEE---YMAVLEEEMYRAASELRYEDAAALRDELFRIR 655 >gi|282856668|ref|ZP_06265936.1| excinuclease ABC, B subunit [Pyramidobacter piscolens W5455] gi|282585517|gb|EFB90817.1| excinuclease ABC, B subunit [Pyramidobacter piscolens W5455] Length = 683 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 314/666 (47%), Positives = 437/666 (65%), Gaps = 18/666 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + PSGDQP AI LL+G+ EK L+GVTGSGKTFT+A V+ RP +V+A Sbjct: 6 FKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTLVLA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SEFK FFP NAV Y+VSYYDYYQPEAY+P +DT+IEK++SIN QI+RMR Sbjct: 66 HNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIERMRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T+SL+ER D IVV+SVSCIYG+G ++Y IV +G+ ++ +L+K Y+R Sbjct: 126 ATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYYERN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + G +RV GD +E++P + D R S F ++E I E P++G+ + + ++ Sbjct: 186 DFDLQPGKYRVRGDVLEVYPVY-SDATLRFSFFDEELESIEEVDPVSGRSTARKQHVSVF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 HYVT + +M IK E+++++ + EG+ LEA+RL R YD+EML G C Sbjct: 245 PAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL GR GE P TL ++ P D L+ VDESH+T+PQ+ GM+ GD RK L E+ Sbjct: 305 GIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVLVEH 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPSC+DNRPL++ E+ + SATPG WEL + +VEQ+IRPTG+ DP VE Sbjct: 365 GFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSRR-VVEQLIRPTGIADPEVE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R A Q++D+ EI G R L+T LTK+ AE+L Y+ ++ Y+HSE+ E Sbjct: 424 VRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELNAFE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I LR G +VL+G+NLLREG+D+PE LVAILDAD+EGFLRS SL+Q +GRAAR Sbjct: 484 RAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGRAAR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NV+S+VILYAD +T SI+ A+ E+ RRRE QL++N++H+I PQ++ + I ++ + E Sbjct: 544 NVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVEFEA 603 Query: 741 AATTNISIDAQQLSLSKKKGKAHL-----KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 A K+ + H+ ++L K M A + L FE+AA+IRD I+ ++ Sbjct: 604 APEAK-----------NKRAQQHIEHMDNEALEKLMWEAVEKLQFEKAAKIRDMIQAMEE 652 Query: 796 SPYFQG 801 QG Sbjct: 653 GRTPQG 658 >gi|265756510|ref|ZP_06090716.1| excinuclease ABC, B subunit [Bacteroides sp. 3_1_33FAA] gi|263233698|gb|EEZ19313.1| excinuclease ABC, B subunit [Bacteroides sp. 3_1_33FAA] Length = 677 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 325/668 (48%), Positives = 461/668 (69%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV + ++I+ I E P++G ++ + KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L + + E+EG++ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GRN G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFR+ S DNRPL+FEE+ L I VSATP +EL + +GIIVEQ+IRPTGL+DP + Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLHNDIRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ +LR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILL 738 RN+N KVI+YAD +T S++ IDET RRREKQL +N++H I P+ + + + ++ Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601 Query: 739 EDAATT------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 E A TT ++ D ++K + + ++ RK M AA L F EAA+ Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 RDE+ +L+ Sbjct: 662 RDELLKLE 669 >gi|237726985|ref|ZP_04557466.1| excinuclease ABC subunit B [Bacteroides sp. D4] gi|229433841|gb|EEO43918.1| excinuclease ABC subunit B [Bacteroides dorei 5_1_36/D4] Length = 677 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 325/668 (48%), Positives = 461/668 (69%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV + ++I+ I E P++G ++ + KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L + + E+EG++ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GRN G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFR+ S DNRPL+FEE+ L I VSATP +EL + +GIIVEQ+IRPTGL+DP + Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ +LR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILL 738 RN+N KVI+YAD +T S++ IDET RRREKQL +N++H I P+ + + + ++ Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601 Query: 739 EDAATT------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 E A TT ++ D ++K + + ++ RK M AA L F EAA+ Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 RDE+ +L+ Sbjct: 662 RDELLKLE 669 >gi|289757735|ref|ZP_06517113.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T85] gi|289713299|gb|EFD77311.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T85] Length = 535 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 302/530 (56%), Positives = 391/530 (73%), Gaps = 1/530 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 R+E++R LRLG +DVLVGINLLREGLD+PE LVAILDADKEGFLRS + Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSAAA 535 >gi|150005555|ref|YP_001300299.1| excinuclease ABC subunit B [Bacteroides vulgatus ATCC 8482] gi|254884531|ref|ZP_05257241.1| excinuclease ABC subunit B [Bacteroides sp. 4_3_47FAA] gi|294778638|ref|ZP_06744060.1| excinuclease ABC, B subunit [Bacteroides vulgatus PC510] gi|319640777|ref|ZP_07995490.1| UvrABC SOS-repair system protein B [Bacteroides sp. 3_1_40A] gi|149933979|gb|ABR40677.1| UvrABC SOS-repair system protein B [Bacteroides vulgatus ATCC 8482] gi|254837324|gb|EET17633.1| excinuclease ABC subunit B [Bacteroides sp. 4_3_47FAA] gi|294447587|gb|EFG16165.1| excinuclease ABC, B subunit [Bacteroides vulgatus PC510] gi|317387589|gb|EFV68455.1| UvrABC SOS-repair system protein B [Bacteroides sp. 3_1_40A] Length = 677 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 323/668 (48%), Positives = 458/668 (68%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV + ++I+ I E P++G ++ + KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPISGIRLATFDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L + + E+EG++ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GRN G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFR+ S DNRPL+FEE+ L I VSATP +EL + +GIIVEQ+IRPTGL+DP + Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ +LR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726 RN+N KVI+YAD +T S++ IDET RRREKQL +N++H I P+ ++ Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601 Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 E P + ++ + D ++K + + ++ RK M AA L F EAA+ Sbjct: 602 EVAGTTQGPKAYIEPSSDTTAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 RDE+ +L+ Sbjct: 662 RDELLKLE 669 >gi|237710478|ref|ZP_04540959.1| excinuclease ABC subunit B [Bacteroides sp. 9_1_42FAA] gi|229455200|gb|EEO60921.1| excinuclease ABC subunit B [Bacteroides sp. 9_1_42FAA] Length = 677 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 322/668 (48%), Positives = 459/668 (68%), Gaps = 15/668 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AIAQL +G+ Q LLGVTGSGKTFT+A VI+ + +P ++++ Sbjct: 3 FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R Sbjct: 63 HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 +AT +LL R D +VVSSVSCIYG+G+ + ++++K G +++ L LV Y R Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I+ ++ D RV + ++I+ I E P++G ++ + KI Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + ++T + + A+ I+++L + + E+EG++ EA+RL +R+TYD+EM+ G C Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GRN G P L ++ P+D L+ +DESHV++PQI MY GD RK L E Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFR+ S DNRPL+FEE+ L I VSATP +EL + +GIIVEQ+IRPTGL+DP + Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ +EI ++ R+L+T LTKRMAE+LTEYL +IR Y+HS+V TL Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ +LR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726 RN+N KVI+YAD +T S++ IDET RRREKQL +N++H I P+ ++ Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601 Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786 E + + ++ ++ D ++K + + ++ RK M AA L F EAA+ Sbjct: 602 EAVGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661 Query: 787 RDEIKRLK 794 RDE+ +L+ Sbjct: 662 RDELLKLE 669 >gi|187736045|ref|YP_001878157.1| excinuclease ABC, B subunit [Akkermansia muciniphila ATCC BAA-835] gi|187426097|gb|ACD05376.1| excinuclease ABC, B subunit [Akkermansia muciniphila ATCC BAA-835] Length = 715 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 315/710 (44%), Positives = 446/710 (62%), Gaps = 60/710 (8%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQ AI +LLK + + K Q LLGVTGSGKTFTMA +I M RP +V++ Sbjct: 4 FELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL+SE K+FFP+NAV+Y+VSY+DYYQPEAY+ +DTYIEK+S+IN+++DR+ Sbjct: 64 HNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDRLSL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 +A SL+ R D IVV+SVSCIYG+ + E Y + ++++ GD +++ L LV++ ++RQ Sbjct: 124 NAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLFERQ 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ +E+FP++ E A RV FG+++E +S TG+ + + + Sbjct: 184 DFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSYTFF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 YV A+K I+EEL+ R+ EK GRLLEAQRL+ R YDLE++E G C+ Sbjct: 244 PAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELGFCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PG P TL ++ P+DSL +DESHV +PQ+ GMY GD RK L E+ Sbjct: 304 GIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNILVEH 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-------------------- 540 GFRLPS +DNRPL+F E+ + + SATPG +EL C Sbjct: 364 GFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSGEKA 423 Query: 541 ----QGII-------------------------------VEQIIRPTGLVDPPVEIRSAR 565 +GI+ VEQIIRPTGL++P + IR + Sbjct: 424 PEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIRPLK 483 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 Q+++ N + R+L+T LTK+ AEDLTEYL ++V Y+H++V +ER+EI+ Sbjct: 484 GQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERVEIL 543 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R LR K DVLVGINLLREGLD+PE LV ILDADKEGFLR++TSL+QT GRAAR++N + Sbjct: 544 RALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHLNGE 603 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745 +L+AD +T SI+ ++ T RR Q ++N++H I PQ+V + +D + Sbjct: 604 CVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRSEQGQLKLYAEDDEESFR 663 Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 ++ D L ++ + L +M AA +L FE AA IRDEI++++ Sbjct: 664 VAEDEAGYGLEER-----IARLETEMKEAASHLEFERAALIRDEIRQMRG 708 >gi|26554342|ref|NP_758276.1| excinuclease ABC subunit B [Mycoplasma penetrans HF-2] gi|81846183|sp|Q8EUN2|UVRB_MYCPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|26454352|dbj|BAC44680.1| excinuclease ABC subunit B [Mycoplasma penetrans HF-2] Length = 662 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 318/663 (47%), Positives = 433/663 (65%), Gaps = 14/663 (2%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 T F +++ + PSGDQP AI +++KG + K Q+L+G TG+GKTFTMA +I+++ + Sbjct: 7 TVFDLKSKFKPSGDQPQAIEKIVKGFKEDKFKSQVLVGATGTGKTFTMANIIQSLNCKTL 66 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V+A NK LAAQLYSEFK FP N VEYFVS +D+YQPEA++P+T+TYIEK S N I+ Sbjct: 67 VLAHNKTLAAQLYSEFKEMFPDNKVEYFVSAFDFYQPEAFLPKTNTYIEKNSQSNNDIEM 126 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 + SA SL+ER+D IVV+SV+ IY + + + V K + K++ LV Y Sbjct: 127 LNLSALNSLIERDDVIVVASVAAIYASSPPDDFFKNRVAYKKNQVIPIKQVQYELVNLNY 186 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +R D+ + G F V GD +EI P ++ +R+S FG++IEEI++ PLT Q I ++ I Sbjct: 187 QRNDVDVTHGRFSVKGDLMEIGPGFTDEFNYRISFFGDEIEEIAKIDPLTKQVITKLDEI 246 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 + Y+ R TL ++K IK+EL K+ +L+EAQR+ +R +D+E + G Sbjct: 247 VLPGAEVYLANRDTLEESLKRIKDELTETHKNFLKQNKLIEAQRILERTNHDIESFKEFG 306 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSR+L R G+ P T+F+Y +D LL VDESH+ +PQI GMY D RK TL Sbjct: 307 FCPGIENYSRHLELRAQGQTPYTIFDYFDKDWLLIVDESHMMVPQIRGMYNTDRSRKETL 366 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 EYGFRLPS +DNRPL F E+ + VSATP WE+E+ Q I EQIIRPTGLVDP Sbjct: 367 VEYGFRLPSALDNRPLNFNEFLSKTDKKLYVSATPNEWEIEESQQ-ITEQIIRPTGLVDP 425 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 +EIR + Q+ D+ E+ R +TV+T R+AE+LTEYL +NI+V Y+H+E+K Sbjct: 426 IIEIRPTQDQILDIEQELRKQIANKERTFITVMTIRLAEELTEYLRNKNIKVAYLHNELK 485 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+ER +I+ +LR G +DV++GINLLREGLD+PE V ILDADK GF RS SLIQ IGR Sbjct: 486 TIERFKILNNLRKGIYDVVIGINLLREGLDVPEVSKVLILDADKPGFFRSDKSLIQIIGR 545 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 A+RNVN KVI+YADTIT+++ AI ET RRR Q+E NKKHNI P++ VI PI Sbjct: 546 ASRNVNGKVIMYADTITEAMDKAIKETERRRNIQIEFNKKHNITPKT-------VIKPIA 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRL 793 L D + + I+ +L KK K + K LR++M AA N +E AA IRD I L Sbjct: 599 L-DLSKNDADINIDELISKNKKSKEKIDRTVKKLREEMLAAAKNQEYERAAYIRDIIMEL 657 Query: 794 KSS 796 +++ Sbjct: 658 EAN 660 >gi|47459407|ref|YP_016269.1| excinuclease ABC subunit B [Mycoplasma mobile 163K] gi|81614104|sp|Q6KH72|UVRB_MYCMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|47458737|gb|AAT28058.1| excinuclease ABC helicase subunit B [Mycoplasma mobile 163K] Length = 659 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 311/656 (47%), Positives = 434/656 (66%), Gaps = 2/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L++G+ +K Q+LLGVTGSGKTFT+A VI+A RP ++++ Sbjct: 6 FELVSTYKPTGDQPRAIQELIEGLEQNKKSQVLLGVTGSGKTFTIANVIKAANRPVLLLS 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE K+FFP+N VEYFVSY+DYY+PEAY+P TDTYI+K + N ++ MR Sbjct: 66 HNKTLASQLYSELKDFFPNNRVEYFVSYFDYYRPEAYMPNTDTYIDKTTKSNWDLEEMRM 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S S+ + D IVV+SV+ IYG + Y + I + +KE L LV++ YKR Sbjct: 126 STLNSISTKRDTIVVASVASIYGALKPKEYWSAFYNISIAQKISRKEFLLDLVQRGYKRN 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++ G+F GD ++I P+ + RV FG++IE+IS I + I+ Sbjct: 186 NVASEPGSFNAKGDFVDIIPAWTKGFHIRVEFFGDEIEKISTIDSNNKITIEKFKEYLIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y P T+ A+ I+EEL RL EKEG+LLE QRLE R DLE LE G C Sbjct: 246 PASAYTAPTGTIEAAVLRIREELHQRLEYFEKEGKLLEKQRLEDRTRNDLESLEEFGFCP 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR GE P TLF+Y+P D+LL +DESH+ IPQ++GMY GD RK L Y Sbjct: 306 GIENYSRHVDGRAEGEQPFTLFDYLPNDALLIIDESHMMIPQLNGMYNGDRARKLNLVNY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ I +SATP +E+ Q G IV+QIIRPTGL+DP +E Sbjct: 366 GFRLPSALDNRPLQFHEFEKYEFQKIYISATPSDYEINQAHGEIVKQIIRPTGLLDPLIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + QVED++DEI + R L+ TK+++E+LT Y E+ +V Y+HS+ T E Sbjct: 426 IRREQNQVEDMFDEIQKQKAKKQRTLILATTKKVSEELTRYFQEKKEKVAYIHSDYTTFE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+R LR G +D ++GINLLREG+D+PE L+ +LDA+KE F RSK SLIQ +GRAAR Sbjct: 486 RNEILRKLRKGVYDTVIGINLLREGIDLPEVSLIMVLDANKESFFRSKKSLIQIVGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 NVN +VI YA+ I+KS++ I + +R+ Q+++NKKHNI P+++ + I E I+ L + Sbjct: 546 NVNGRVIFYANNISKSMEETIYDNLDKRKIQMDYNKKHNIIPKTIIKPITEAIEDKKLNE 605 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + +S + S+ +K +A +K LR QM A+ LNFE AA +RD I L+++ Sbjct: 606 SLISFMSHSKTKKSIKEK--EALVKDLRNQMLDASKQLNFERAAELRDIILELEAN 659 >gi|187918690|ref|YP_001884257.1| excinuclease ABC subunit B [Borrelia hermsii DAH] gi|119861538|gb|AAX17333.1| excinuclease ABC subunit B [Borrelia hermsii DAH] Length = 654 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/654 (47%), Positives = 435/654 (66%), Gaps = 6/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQP AI ++ + I K Q L GVTGSGKTFT+A +I ++RP+++++ Sbjct: 3 FCLKSDYSPAGDQPKAIREIKESILLDNKYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP D YIEKE++INE I+ R Sbjct: 63 HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SL R D IVV++VS IY +GS E + +G + KE+ VK QY+R Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPEFFKSAAYAFFVGQKISIKEIADIFVKLQYERT 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + + F + GD IEI+PS+ D A+R+ + ++I I+ PLT + + + + Sbjct: 183 LMNLEHDKFSIKGDLIEIWPSNEHGDFAYRIYLDFDNIIRINRISPLTKKILGITDEFTL 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 +A S++V P + A+ I+ +L+M+ + ++ G+L+EA+RL QR+ YD+EML TGSC Sbjct: 243 FAKSYFVIPYENILNALPKIQADLEMQYLYFKESGKLVEAERLRQRVEYDIEMLRETGSC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 Q IENYS+Y G + P LF++ P+D LLF+DESHVT+PQ GMY GD+ RK L Sbjct: 303 QGIENYSKYF-GDSEMNRPYCLFDFFPKDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS ++NRPL++ E+ L + VSATPG E E+ +IVEQIIRPTGLVDP + Sbjct: 362 FGFRLPSALENRPLKYHEFEALMNQAVFVSATPGLEEREKS-SVIVEQIIRPTGLVDPEI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 IR + Q+ED+Y+E+ ++L+T LTK+MAEDLT+YL +I+ RY+H+E + Sbjct: 421 IIRVSDGQMEDLYNEVQKRIALNEKVLITTLTKKMAEDLTDYLLTLDIKARYLHAEFNAI 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++II LR + DV+VGINLLREGLDIPE LV ILDADK GFLRS SLIQ IGRAA Sbjct: 481 ERVDIITSLRRSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSTASLIQMIGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N VI+Y D ++ ++Q AI+ET RRR+ Q+E+NKK+NI P+++ +K+ +++ L Sbjct: 541 RNSNGCVIMYYDQVSSAMQEAIEETNRRRDIQIEYNKKNNIVPKTIIKKVQNILEKELKN 600 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + NI LSKK LK ++ A + FE+A +RD+IK L Sbjct: 601 ETVDYNIKRIISDDKLSKKDLIIKLKF---KLEEAVSDERFEDAIFLRDKIKEL 651 >gi|293363472|ref|ZP_06610228.1| excinuclease ABC, B subunit [Mycoplasma alligatoris A21JP2] gi|292552821|gb|EFF41575.1| excinuclease ABC, B subunit [Mycoplasma alligatoris A21JP2] Length = 657 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 299/652 (45%), Positives = 440/652 (67%), Gaps = 4/652 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ FQ++ +Y PSGDQP AI ++ +GI K Q+L GVTGSGKTFT+A VI+ RP + Sbjct: 1 MSIFQLRANYKPSGDQPKAIQEISEGIAEGLKHQVLEGVTGSGKTFTVANVIQNFDRPVL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LA+QLYSE K+FFPHNAVEYFVSY+DYY+PEAY+P +DTYIEK S N+ I+ Sbjct: 61 VLSHNKTLASQLYSELKSFFPHNAVEYFVSYFDYYRPEAYLPTSDTYIEKTSKTNQDIEL 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R S SLL+R D IVV+SVS IYG + Y + I+++ +G K+ L +LVK +Y Sbjct: 121 LRMSTINSLLKRRDVIVVASVSSIYGALNPNEYQKGILEIFVGLDFVFKDFLRTLVKIKY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R DI G+F V GD+I I P+ ED R+ FG+ IEEIS +T I+ +T Sbjct: 181 DRNDIDNPPGSFSVKGDTILISPADSEDYLLRIDFFGDTIEEISHVDKITKNVIKTFKTY 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY Y +T + IK+E++ R ++ LLEAQR+ +R+ D++ + G Sbjct: 241 FIYPGEAYTVSNSVFDTILPMIKQEMENREKYFKENNLLLEAQRISERVKNDMDDMAEYG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENY+ YL GRN G+ P TLF+Y+P D++LF+DESH+ IPQ++GMY+GD RK TL Sbjct: 301 FCSGIENYTMYLDGRNFGQRPFTLFDYLPSDTILFLDESHMMIPQLNGMYKGDRARKQTL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 +YGFRLPS ++NRPL+FEE+ N I +SATP +EL++ +G++ + +RPTGL+D Sbjct: 361 VDYGFRLPSALENRPLKFEEFENSFDYQRIYISATPNEYELDKSEGLVTKLYVRPTGLLD 420 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +EI+ + Q+ED++D+I + R ++ TKR AE+L+ Y+ R ++ Y+HS+ Sbjct: 421 PILEIKPTKNQIEDIFDQIQGQITKDQRAIILTTTKRSAEELSSYMQTRKVKSAYIHSDY 480 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 T +R +I+R LR G +DV++GINLLREG+D+PE LV +LDADKEGF+R+K+SLIQ G Sbjct: 481 DTFKRNDILRKLRKGIYDVVIGINLLREGIDLPEVSLVVVLDADKEGFMRNKSSLIQIAG 540 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN + +VI YAD +TKS++ + +R Q+ +NKKHNI PQ++ ++I+E I Sbjct: 541 RAARNKDGRVIFYADVLTKSLKECFKDNEYKRNLQIAYNKKHNIIPQTIYKEILEPIQGH 600 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++++ +S + + +SK++ +K ++ QM AA +L++E A +RD Sbjct: 601 EIDNSLELVLSKNKK---ISKQEKDEMIKKIKIQMKQAAKDLDYERAIELRD 649 >gi|270340125|ref|ZP_06007127.2| excision endonuclease subunit UvrB [Prevotella bergensis DSM 17361] gi|270332472|gb|EFA43258.1| excision endonuclease subunit UvrB [Prevotella bergensis DSM 17361] Length = 685 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 320/673 (47%), Positives = 457/673 (67%), Gaps = 21/673 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AIA+L +G+ + Q+LLGVTGSGKTFT+A VI + +P +V++ Sbjct: 11 FKLTSQYEPTGDQPQAIARLTEGVLHGDPAQVLLGVTGSGKTFTVANVIANVGKPTLVLS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAV+Y+VSYYDYYQPEAY+P TD YIEK+ SIN++ID++R Sbjct: 71 HNKTLAAQLYEEMKGFFPDNAVDYYVSYYDYYQPEAYLPTTDLYIEKDLSINDEIDKLRL 130 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A LL R D IVVSSVSCIYG+G Q I+ +K G +++ E L LV Y R Sbjct: 131 RAVSDLLSGRKDVIVVSSVSCIYGMGGPVGMQQSIISIKRGQRLDRNEFLRRLVNALYTR 190 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D+ + RG F V GD++ I ++ D RV+ + ++I+ I E P+T + +++ +I Sbjct: 191 NDVDLQRGFFSVKGDTVNIAMAY-SDHILRVTWWDDEIDSIEEADPVTMRSLQSFAEYQI 249 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ ++ G ++AQR+++R+ YDLEM++ G C Sbjct: 250 YPANLFVTSKDQTEIAIRNIQDDLVDQIEFFKEAGDDIKAQRIKERVEYDLEMIKELGHC 309 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG+ P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 310 SGIENYSRYFDGRQPGQRPYCLLDFFPDDFLIVIDESHVSVPQISAMYGGDRARKRNLVE 369 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE++ + I VSATP ++EL++ +G++VEQ+IRPTGL+DP + Sbjct: 370 YGFRLPAAFDNRPLRFEEFHEMAKQVIYVSATPANYELQEAEGVVVEQLIRPTGLLDPEI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ EI + ++ RIL+T LTKRMAE+LTEYL ++R Y+HS+V TL Sbjct: 430 VVRPSENQIDDLLHEIQIRCERDERILVTTLTKRMAEELTEYLLNNDVRANYIHSDVATL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G +DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 490 DRVQIMNDLRAGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733 RNVN KVI+YADTIT+S+Q IDET RRR Q+++N + I P+ + + I + Sbjct: 550 RNVNGKVIMYADTITESMQRTIDETARRRSIQMKYNADNGITPRQIVKDIKGTLPNARGE 609 Query: 734 ----------DPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 + LE D+A + D L +++ + + + + ++ M AA L+F + Sbjct: 610 EYKSAGDMGKQRVYLEPDSAA--FAADPIVLRMTRPELEKSIANTKQLMEQAAKALDFIQ 667 Query: 783 AARIRDEIKRLKS 795 AA+ RDEI RL++ Sbjct: 668 AAQYRDEILRLQA 680 >gi|315453940|ref|YP_004074210.1| excinuclease ABC subunit B [Helicobacter felis ATCC 49179] gi|315132992|emb|CBY83620.1| excinuclease ABC subunit B [Helicobacter felis ATCC 49179] Length = 655 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 309/658 (46%), Positives = 436/658 (66%), Gaps = 11/658 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ Y S +Q + L +G+ + Q L+GVTGSGKTF+MA +I +Q P ++M+ Sbjct: 4 FQLHAPYAMSLEQEKVVQTLSEGVEQGARYQTLIGVTGSGKTFSMANLIARLQMPTLIMS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FFP N VEYF+S++DYYQPE+Y+PR D +IEK+SSINE ++R+R Sbjct: 64 HNKTLCAQLYSEFKGFFPKNHVEYFISHFDYYQPESYIPRRDLFIEKDSSINEDLERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA SLL D IVV+SVS YG+G+ Y M+ ++++G K+ L LV+ Y RQ Sbjct: 124 SAVTSLLSYEDVIVVASVSANYGLGNPAEYLSMLEKIQVGQVRPYKQFLLKLVEMGYSRQ 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I + RG FRV G+ ++IFP++ ++ R+ FG++IE I+ L ++ +++ +Y Sbjct: 184 EI-LERGKFRVVGECVDIFPAYNDENFIRIEFFGDEIERITSMDALENTPLKQLDSYPLY 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A+K I++EL+ RL ++ + LE +RL+ R +DLEM+ TG C+ Sbjct: 243 AANAFIVSPERLQQAIKDIEQELQARLSFFKQAQKPLEYERLKTRTEFDLEMISATGICK 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497 IENY+R+ TG+ GE P TL +Y + L+ VDESHV++PQ GMY GD RK L Sbjct: 303 GIENYARHFTGKQEGETPYTLMDYFAQKQRPFLVIVDESHVSLPQFKGMYAGDLSRKQVL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 +YGFRLP +DNRPL++EE+ P + VSATP ELE QG I +QIIRPTGL+DP Sbjct: 363 VDYGFRLPCALDNRPLQYEEFITKPPHFLFVSATPNPLELELSQGHIAQQIIRPTGLLDP 422 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 E+R QV D+++ I + R+L+T LTKRMAE+L ++ E +RV+Y+HS++ Sbjct: 423 EYEVRPVANQVRDLFESIKEVVSRHERVLVTTLTKRMAEELCKHYLEWGLRVQYLHSDID 482 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER +IR+LRLG FDVL+GINLLREGLD+PE LVAILDADKEGFLRS+TSLIQT+GR Sbjct: 483 AIERNHLIRELRLGVFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 542 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPI 736 AAR+V KV+ YAD IT S+Q A+ + RR KQ N +H I P+SV+ + E+ID + Sbjct: 543 AARHVRGKVLFYADKITASMQKAMQISDERRAKQKAFNAEHGIEPKSVQRHVEEELIDSL 602 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + + + K + +K+LR QM A L+FEEAAR+RDEI R++ Sbjct: 603 PAKPKRSKALE------KMPKSEKDRLIKTLRAQMQQRAKVLDFEEAARLRDEIARIR 654 >gi|330443972|ref|YP_004376958.1| excinuclease ABC subunit B [Chlamydophila pecorum E58] gi|328807082|gb|AEB41255.1| excinuclease ABC, B subunit [Chlamydophila pecorum E58] Length = 663 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 323/655 (49%), Positives = 426/655 (65%), Gaps = 11/655 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + P GDQP AIA+L G+ + Q+LLG TGSGKTFT+A VI P +V+A Sbjct: 12 FHLHSPFQPCGDQPEAIAKLCSGLKENVRAQVLLGATGSGKTFTIANVIAQANLPTLVLA 71 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EF+ FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK IN++ID++R Sbjct: 72 HNKTLAAQLYQEFREFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 131 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATRS+LER D ++VSSVSCIYGIGS E+Y M ++L++G + + L S L K Y+ Sbjct: 132 SATRSILERRDTLIVSSVSCIYGIGSPENYLSMTLELQVGKAYPRDLLTSQLAKMHYQAS 191 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + R FR G +++FP++ E+ A R+ + + I PLT + +Y Sbjct: 192 PLP-QRSAFRELGSVLDVFPAY-ENQALRLEFANDTLVSIDICDPLTMLPQSSTTQTILY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVTP A++ I+EEL+ RL E R +E +RL QR T+D+EM++ G C+ Sbjct: 250 PGSHYVTPEAIREYAVRSIREELEERLKFFET--RPVEQERLFQRTTHDIEMIKEIGFCK 307 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ TG PG PP L +Y PE+ LL VDESH T+PQI MYRGD RK L EY Sbjct: 308 GIENYSRHFTGAPPGAPPACLLDYFPEEFLLIVDESHQTLPQIRAMYRGDRSRKEALVEY 367 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE I VSATPG EL++ QG IVEQI+RPTG+ DP E Sbjct: 368 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTELKKSQGHIVEQILRPTGIPDPLPE 427 Query: 561 IRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 IR A QV+D+ +EI + A+ +IL+ LTK++AE++ +L E I Y+H++++T Sbjct: 428 IRPATGQVDDLLEEIRVRLAKTHEKILVISLTKKLAEEIAVFLNELEIPAAYLHADIETA 487 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER I+ DLR GK DVL+G+NLLREGLD+PE LVAILDADKEGFLRS +SLIQ GRAA Sbjct: 488 ERTHILADLRTGKIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 547 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNV+ KVI YAD T +I+ + E RRR+ Q+ +NKKHN+ P+ + + + +PI Sbjct: 548 RNVHGKVIFYADKKTPAIEATLKEAARRRQIQIAYNKKHNLTPRPIIKAVFS--NPI--- 602 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 T +Q ++ K +K K M LAA+ FE+AA+ RD I K Sbjct: 603 PQGTKKDPFPQEQELSQEELEKL-IKKNEKLMLLAAEEFRFEDAAKYRDLIHSYK 656 >gi|323345701|ref|ZP_08085924.1| excision endonuclease subunit UvrB [Prevotella oralis ATCC 33269] gi|323093815|gb|EFZ36393.1| excision endonuclease subunit UvrB [Prevotella oralis ATCC 33269] Length = 678 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 324/675 (48%), Positives = 463/675 (68%), Gaps = 26/675 (3%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L +G+ +K Q+LLGVTGSGKTFT+A VI + +P ++++ Sbjct: 3 FKLTSKYAPTGDQPEAIKELTQGVERGDKAQVLLGVTGSGKTFTVANVIANVNKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL R D +VVSSVSCIYG+G + + ++ +K G +++ E L LV Y R Sbjct: 123 SAVSALLSGRKDVVVVSSVSCIYGMGGPAAMTDSVISIKKGQVLDRNEFLRRLVNALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ +++ RV+ + ++I+ I E T ++ + +I Sbjct: 183 NDIDLQRGFFRVKGDTVDIAMAYSDNI-LRVTWWDDEIDNIEEVDSQTYHRMASFGEYQI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTEQAVRMIQDDLVKQVDFFTELGDNIKAQRIKERVEYDMEMIKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG+ P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGREPGQKPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPL+FEE++ + I VSATP +EL + +G++VEQIIRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLKFEEFHEMIHQVIYVSATPADYELNEAEGVVVEQIIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R + Q++D+ DEI + R+L+T LTKRMAE+LTE+L + I+ Y+HS++ TL Sbjct: 422 EVRPSENQIDDLMDEILTRINRSERVLVTTLTKRMAEELTEFLLDHGIKANYIHSDIATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R++I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVKIMNDLRAGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RNVN KVI+YADTIT+S++ IDETTRRR QL++N++H+I PQ + + I V+ P + Sbjct: 542 RNVNGKVIMYADTITESMRRTIDETTRRRTLQLKYNEEHHITPQQIVKDIKSVL-PTNND 600 Query: 740 DAATTNISIDA-------------------QQLSLSK-KKGKAHLKSLRKQMHLAADNLN 779 +A T S Q+++ + +K A+ +L KQ AA +L+ Sbjct: 601 NATTITQSTSPIRYAYLEPDSGAFAADPIIQRMTREQLEKSIANTTALMKQ---AAKDLD 657 Query: 780 FEEAARIRDEIKRLK 794 F +AA+ RDEI RL+ Sbjct: 658 FIQAAQYRDEIIRLQ 672 >gi|219684941|ref|ZP_03539882.1| excinuclease ABC, B subunit [Borrelia garinii PBr] gi|219671679|gb|EED28735.1| excinuclease ABC, B subunit [Borrelia garinii PBr] Length = 664 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 319/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF + ++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LNSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +R + + R F + G+ IEI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGE-FAYRICL---DFDEIVEIYRISSFSKKNLG 236 Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 T ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G G P LF++ P+D LLFVDESHVT+PQ GMY GD+ Sbjct: 297 LRETGFCSGIENYSKYLSGSEMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L + VSATPG E ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPG-LEENLKSSVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNANGLVIMYYDRISVAMQEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + NI+ D +++ LSKKK + L+ ++ A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNINYDLEKIISGERLSKKK---LINKLKFELEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|216263442|ref|ZP_03435437.1| excinuclease ABC, B subunit [Borrelia afzelii ACA-1] gi|215980286|gb|EEC21107.1| excinuclease ABC, B subunit [Borrelia afzelii ACA-1] Length = 664 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 318/664 (47%), Positives = 448/664 (67%), Gaps = 15/664 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKNLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINSEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R I + R F + GD IEI+PS H E A+R+ D +EI + Y ++ +N+ Sbjct: 181 ERTLINLERDKFSIKGDIIEIWPSSEHGE-FAYRICF---DFDEIVKIYRISSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G G P LF++ P+D LLFVDESHVT+PQ GMY GD+ Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L + VSATPG E E+ +IV+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVIVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL ++ +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791 ++ L + NIS D +++ +K K L L+ ++ A ++ FE+A +RD+IK Sbjct: 595 LEKEL--NNKNKNISYDFEKMVSGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIK 652 Query: 792 RLKS 795 L S Sbjct: 653 ELGS 656 >gi|51599087|ref|YP_073275.1| excinuclease ABC subunit B [Borrelia garinii PBi] gi|81825609|sp|Q65ZT8|UVRB_BORGA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|51573658|gb|AAU07683.1| excinuclease ABC, subunit B [Borrelia garinii PBi] Length = 664 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 319/667 (47%), Positives = 452/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF + ++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LNSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFSVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +R + + R F + G+ IEI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGE-FAYRICL---DFDEIVEIYRISSFSKKNLG 236 Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 T ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD+ Sbjct: 297 LRETGFCSGIENYSKYLSG-SEMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L + VSATPG E + + ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGLEENLKSR-VVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y DTI+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDTISVAMREAIEETNRRRQIQVDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + NI+ D +++ LSKKK + L+ ++ A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNINYDLEKIISGERLSKKK---LINKLKFELEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|294155867|ref|YP_003560251.1| excinuclease UvrABC system, helicase subunit (UvrB) [Mycoplasma crocodyli MP145] gi|291600200|gb|ADE19696.1| excinuclease UvrABC system, helicase subunit (UvrB) [Mycoplasma crocodyli MP145] Length = 657 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 296/660 (44%), Positives = 434/660 (65%), Gaps = 4/660 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ +Q++ +Y PSGDQP AI +L +G+ K Q+L GVTGSGKTFT+A VI+ RP + Sbjct: 1 MSIYQLRANYKPSGDQPRAIQELSEGVAEGLKHQVLEGVTGSGKTFTIANVIQNFDRPVL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LA+QLYSE K+FFPHNAVEYFVSY+DYY+PEAY+P +DTYIEK S N+ I+ Sbjct: 61 VLSHNKTLASQLYSELKSFFPHNAVEYFVSYFDYYRPEAYIPTSDTYIEKTSKTNQDIEL 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 +R S SLL R D IVV+SVS IYG + + Y + I ++ G KE L +L+K +Y Sbjct: 121 LRMSTINSLLRRRDTIVVASVSSIYGALNPQEYQKGIFEIFKGMDFNFKEFLRTLIKIKY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R DI TF V GD++ I P+ ++ R+ FG+ IE I + +T I+ + Sbjct: 181 DRNDIDNPPATFAVRGDTVFISPADSDEFLLRIDFFGDTIEAIYKVDKVTKNIIKEFKVY 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY Y + + I+EEL R+ + +LLEAQR+ +R+ D++ + G Sbjct: 241 AIYPGEAYTVENSIFDKILPMIQEELNQRIKYFNENNKLLEAQRISERVKNDMDEMAEYG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENY+ YL GR+ + P TLF+Y+P D+++F+DESH+ IPQ+ GMY+GD RK TL Sbjct: 301 FCGGIENYTMYLDGRDFNQRPFTLFDYLPNDTIIFLDESHMMIPQLHGMYKGDRARKETL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 YGFRLPS ++NRPL+F E+ I +SATP +E++Q QG++ + +RPTGL+D Sbjct: 361 VNYGFRLPSALENRPLKFHEFEQAFDFQKIYISATPNEYEIDQSQGLVTKLYVRPTGLLD 420 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 P +E+R + Q+ED++DEI + + R ++ TKR AE+L+ Y+ +RNI+ Y+HSE Sbjct: 421 PILEMRPTKNQIEDIFDEIKIQNDKNQRTIVLTTTKRSAEELSSYMQKRNIKSAYIHSEY 480 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 T +R EI+R LR G +DV++GINLLREG+D+PE LV +LDADKEGF+R+++SLIQ G Sbjct: 481 DTFKRNEILRKLRKGIYDVVIGINLLREGIDLPEVSLVVVLDADKEGFMRNRSSLIQIAG 540 Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736 RAARN + +VI YAD TKS++ ++ +RE Q+ +NKKHNI PQ++ ++I E PI Sbjct: 541 RAARNKDGRVIFYADVETKSLKATFEDNKEKRELQIAYNKKHNITPQTIYKEIAE---PI 597 Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 D ++ A+ ++K+ + +K ++ QM AA +L++E A +RD I ++ S Sbjct: 598 QGHDIDNALEAVLAKDKKITKQDKEELIKKIKVQMKQAAKDLDYERAIELRDLIIEIEKS 657 >gi|110004147|emb|CAK98485.1| excinuclease abc subunit b protein [Spiroplasma citri] Length = 654 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 308/659 (46%), Positives = 431/659 (65%), Gaps = 19/659 (2%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AI +L + + +K Q+LLG TG+GKTFTMA VIE Q+P +VM Sbjct: 1 MFKLTSNYLPAGDQPRAIEKLTTNLFANKKHQVLLGATGTGKTFTMANVIENYQKPTLVM 60 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 A NK LA QLY E K FP N VEYFVS +D+YQPEAY+P D YI K++ N ++D MR Sbjct: 61 AHNKTLAMQLYVELKEMFPENRVEYFVSNFDFYQPEAYLPGKDLYINKDARQNMELDMMR 120 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +L R D IVV+SV+ IYG Y + +Q+ + +K+L + LV Y R Sbjct: 121 LSAFNALTTRKDVIVVASVAAIYGAQDPNEYKKSFLQINRNQKISKKDLANFLVSSGYVR 180 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI +I GTF GD I+I P R+ +FG++I++++ +TG + + T+ I Sbjct: 181 NDIELIPGTFSAKGDVIKIVPGWNVKTFIRIDLFGDEIDDLAYIDGITGDVTQRLSTLTI 240 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + Y+T L A+K I+ ELK+RL+ELE G+++E QRL+QR YDL++L +G C Sbjct: 241 FPAQDYITSPERLVEAIKRIEAELKVRLVELEVAGKIVELQRLKQRTEYDLDLLRESGIC 300 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSR+L R GE P TL ++ ED L +DESH+++PQI MY D RK TL Sbjct: 301 SGIENYSRHLDLREEGEAPYTLIDFFGEDFLTIIDESHMSLPQIRAMYNTDRSRKETLVN 360 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRL S +DNRPL F+E+N I VSATPG +EL +VEQIIRPTGL+DP V Sbjct: 361 YGFRLKSALDNRPLNFDEFNQKLKNVIYVSATPGDYELGLVNNQVVEQIIRPTGLLDPTV 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E++S Q++D+ +++ + ++ R+ +T LT RM+EDLT YL E+N++V Y+HSE+KTL Sbjct: 421 EVKSTVGQIDDIIEQVKIRRKKNERVFITTLTIRMSEDLTSYLQEQNVKVAYLHSELKTL 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER +I+ DLR G +D +VG+NL+REG+DIPE L+ ILDADK+GFLR++ SLIQTIGRAA Sbjct: 481 ERSQILLDLRKGVYDCIVGVNLIREGIDIPEVSLICILDADKQGFLRNERSLIQTIGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN VILYADT+++S++ A+ ET RRR+ Q +N K++I P ++ + I + Sbjct: 541 RNAAGHVILYADTVSESMEKAMQETARRRQIQEAYNLKYHITPTTIIKNIRDY------- 593 Query: 740 DAATTNISIDAQQL-SLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEI 790 TNI +L + KK K + L+ LRK+M+ A+ L+FE AA +RD I Sbjct: 594 ----TNIKRQDDKLHKIKNKKSKEYKTAKEGLLQDLRKEMYEASKKLDFERAAELRDII 648 >gi|111115671|ref|YP_710289.1| excinuclease ABC subunit B [Borrelia afzelii PKo] gi|123046892|sp|Q0SM15|UVRB_BORAP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|110890945|gb|ABH02113.1| excinuclease ABC, subunit B [Borrelia afzelii PKo] Length = 664 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 317/664 (47%), Positives = 448/664 (67%), Gaps = 15/664 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKNLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINSEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R I + R F + GD IEI+PS H E A+R+ + D +EI + Y ++ +N+ Sbjct: 181 ERTLINLERDKFSIKGDIIEIWPSSEHGE-FAYRICL---DFDEIVKIYRISSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G G P LF++ P+D LLFVDESHVT+PQ GMY GD+ Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L + VSATPG E E+ + V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVTVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL ++ +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791 ++ L + NIS D +++ +K K L L+ ++ A ++ FE+A +RD+IK Sbjct: 595 LEKEL--NNKNKNISYDFEKMVSGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIK 652 Query: 792 RLKS 795 L S Sbjct: 653 ELGS 656 >gi|219685788|ref|ZP_03540598.1| excinuclease ABC, B subunit [Borrelia garinii Far04] gi|219672673|gb|EED29702.1| excinuclease ABC, B subunit [Borrelia garinii Far04] Length = 664 Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 447/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF + ++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LNSEYFPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL++R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLVKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +R + + R F + G+ IEI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGE-FAYRICL---DFDEIVEIYRISSFSKKNLG 236 Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 T ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G G P LF++ P+D LLFVDESHVT+PQ GMY GD+ Sbjct: 297 LRETGFCSGIENYSKYLSGSEMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L + VSATPG E ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPG-LEENFKSSVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL + +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVGAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNANGLVIMYYDRISVAMQEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + NI+ D +++ LSKKK + L+ ++ A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNINYDLEKIISGERLSKKK---LINKLKFELEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK S Sbjct: 650 KIKEFSS 656 >gi|282879576|ref|ZP_06288307.1| excinuclease ABC, B subunit [Prevotella timonensis CRIS 5C-B1] gi|281306524|gb|EFA98553.1| excinuclease ABC, B subunit [Prevotella timonensis CRIS 5C-B1] Length = 678 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 319/673 (47%), Positives = 449/673 (66%), Gaps = 20/673 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL G+ + Q+LLGVTGSGKTFT+A VI+ +Q+P ++++ Sbjct: 3 FKLTSKYQPTGDQPQAIQQLTDGVRRGDPAQVLLGVTGSGKTFTVANVIQNIQKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P +D YIEK+ SIN++IDR+R Sbjct: 63 HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPSSDLYIEKDLSINDEIDRLRL 122 Query: 261 SATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 SA +LL +VV S CIYG+G + + I+ ++ G +++ + L LV+ Y R Sbjct: 123 SAVSALLSGRSDVVVVSSVSCIYGMGGPSAMTNSIISIQKGQHIDRNDFLRKLVEALYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD+++I ++ +V R++ + ++IE I E T ++ + E I Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSNNV-LRITWWDDEIETIEEVDSTTFHQLESFEEYHI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A+ I+ +L ++ E+ G L+AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTSKEQTERAIHEIQNDLVKQIDYFEEIGDQLKAQRIKERVEYDMEMIKELGYC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR GE P L ++ P+D L+ +DESHV++PQIS MY GD RK L E Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKRNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 YGFRLP+ DNRPLRFEE+ + I VSATP +EL++ +G++VEQ+IRPTGL+DP + Sbjct: 362 YGFRLPAAFDNRPLRFEEFQDMLHQVIYVSATPADYELQEAEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 ++R + Q++D+ DEI ++G R+L+T LTKRMAE+LTEYL ++R Y+HS++ TL Sbjct: 422 DVRPSENQIDDLLDEILQRTERGERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDIGTL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER++I+ DLR G FDVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 ERVKIMNDLRAGMFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN++ KVI+YADTIT S++ IDET RRR QL++N++H+I P + + I + P E Sbjct: 542 RNIHGKVIMYADTITDSMRKTIDETARRRSIQLKYNEEHHITPTQIVKDIKNAL-PTAKE 600 Query: 740 DAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQ----------------MHLAADNLNFEE 782 S + AQQ + G + +Q M AA +L+F + Sbjct: 601 KMKEKRYSTVAAQQAYMEPLGGAFAADPIVQQMTHEQLEKSIADTTAMMKQAAKDLDFLQ 660 Query: 783 AARIRDEIKRLKS 795 AA+ RDEI RL++ Sbjct: 661 AAQYRDEIIRLQT 673 >gi|218249758|ref|YP_002375332.1| excinuclease ABC, B subunit [Borrelia burgdorferi ZS7] gi|226695479|sp|B7J0S9|UVRB_BORBZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|218164946|gb|ACK75007.1| excinuclease ABC, B subunit [Borrelia burgdorferi ZS7] Length = 668 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 315/664 (47%), Positives = 446/664 (67%), Gaps = 15/664 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +R + + R F + GD +EI+PS H E A+R+ + ++I EI + +K+ Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICLDFDEIVEIYRVSSFSKKKLGATN 239 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + ++A S++V P + A+ I +L ++ + GRL+EA+RL+QR+ YDLEML Sbjct: 240 SFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRE 299 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD RK Sbjct: 300 TGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKL 358 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPTGLV Sbjct: 359 NLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLV 417 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+HSE Sbjct: 418 DPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSE 477 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLIQTI Sbjct: 478 LDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTI 537 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI +++ Sbjct: 538 GRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEK 597 Query: 736 ILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD+IK Sbjct: 598 EL--NNKNKNVGYDFEKIISDERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRDKIK 652 Query: 792 RLKS 795 L S Sbjct: 653 ELSS 656 >gi|312149447|gb|ADQ29518.1| excinuclease ABC, B subunit [Borrelia burgdorferi N40] Length = 668 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 318/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + GRL+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|315931875|gb|EFV10830.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni 327] Length = 596 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 298/582 (51%), Positives = 400/582 (68%), Gaps = 9/582 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 2 LELTSEFKPSPDQQEAINGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R Sbjct: 62 HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S + L A+K IK EL RL E E +L+E QRL+QR+ +DLEML +TG C+ Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 +ENY+R+LTG G+ P TLF+Y L+ VDESHV++PQ GM+ GD RK TL Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361 Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 +YGFRLPS +DNRPL F+E+ NC + VSATP ELE + I QI+RPTGL Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 +DP +E++ + QVE ++DE Q+ R+L+TVLTK++AE+LT Y E I+V+YMHS Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ +ER EIIR LR G FD+L+GINLLREGLD+PE L+AI+DADKEGFLRS TSLIQT Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 +GRAARNVN KV+L+ ITKS+Q A+D T RR+ Q+ +NK Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNK 580 >gi|15595181|ref|NP_212970.1| excinuclease ABC subunit B [Borrelia burgdorferi B31] gi|8134783|sp|O51776|UVRB_BORBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|2688782|gb|AAC67185.1| excinuclease ABC, subunit B (uvrB) [Borrelia burgdorferi B31] Length = 673 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 7 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 65 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 66 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 125 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 126 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 185 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 186 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 241 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 242 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEM 301 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 302 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDXLLFVDESHVTLPQFRGMYNGDHS 360 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 361 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 419 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 420 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 479 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 480 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 539 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 540 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 599 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 600 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 654 Query: 789 EIKRLKS 795 +IK L S Sbjct: 655 KIKELSS 661 >gi|224534171|ref|ZP_03674751.1| excinuclease ABC, B subunit [Borrelia spielmanii A14S] gi|224514596|gb|EEF84910.1| excinuclease ABC, B subunit [Borrelia spielmanii A14S] Length = 662 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 315/665 (47%), Positives = 447/665 (67%), Gaps = 15/665 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIEDSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINAEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F V GD +E++PS H E A+R+ + D +EI + Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSVKGDVVEVWPSSEHGE-FAYRICL---DFDEIVKIYRISSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G G P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L I VSATPG +E ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVIFVSATPG-FEENDKSSVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL ++ +Y+ Sbjct: 415 GLVDPEIVTRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVKAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LV ILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVVILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMQEAIEETNRRRQIQIDYNKKNNIIPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791 ++ L + NIS D +++ +K K L L+ ++ A ++ FE+A +RD+IK Sbjct: 595 LEKEL--NNKNKNISYDFEKIISGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIK 652 Query: 792 RLKSS 796 L S+ Sbjct: 653 ELSST 657 >gi|224532435|ref|ZP_03673061.1| excinuclease ABC, B subunit [Borrelia burgdorferi WI91-23] gi|224512607|gb|EEF82982.1| excinuclease ABC, B subunit [Borrelia burgdorferi WI91-23] Length = 668 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDSGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|15828567|ref|NP_325927.1| excinuclease ABC subunit B [Mycoplasma pulmonis UAB CTIP] gi|14548015|sp|P58174|UVRB_MYCPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|14089509|emb|CAC13269.1| EXCINUCLEASE ABC SUBUNIT B [Mycoplasma pulmonis] Length = 657 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 300/655 (45%), Positives = 427/655 (65%), Gaps = 15/655 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y PSGDQP AI +L + I +K +L GVTGSGKTFT+A +I R +V++ Sbjct: 2 FKLHSNYSPSGDQPRAIQELAEDIEKNKKHLVLQGVTGSGKTFTIANLIAKFNRTTLVLS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE K FFP N VEYFVSY+D+Y+PEAY+P TDTYI+K S N ++D MR Sbjct: 62 HNKTLASQLYSELKEFFPENRVEYFVSYFDFYRPEAYLPSTDTYIDKTSKTNNELDAMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S+ +LL R D IVVSSV+ IYG + + Y + +++G +++K+ LVK+ YKR Sbjct: 122 SSLNALLTRKDTIVVSSVAAIYGAFNPQEYQKNFFSIEVGQELKRKDFFLDLVKRHYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++ G+F GD +EI P+ D A RV FG++IE I+ PL + + I+ Sbjct: 182 DVNLVPGSFSAKGDVVEIAPAWTSDFAIRVEFFGDEIEAIATIDPLNKTLKKRHKNYLIF 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y T + ++ + +KEEL RL EK +LLE QRLEQR+ D++ LE G C Sbjct: 242 PANAYSTNKDIVSRVVLQVKEELIDRLDYFEKNNKLLEMQRLEQRVKSDMDSLEEFGICS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+RY+ GR GE P TL +Y+PE++L+F+DESH+ +PQ++ M+ GD RK L +Y Sbjct: 302 GIENYARYIDGREQGEKPYTLLDYLPEEALVFIDESHMMVPQLNAMFNGDRSRKQNLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ + I +SATP +E+E+ I + IIRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPLTFSEFEEYKFPKIYISATPSEYEIEKADQKITKMIIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 RS QVED+YDE+ + R L+ TKR +E+LT Y E+ +V Y+HS+ KT E Sbjct: 422 TRSKTNQVEDIYDELQKQKAKNERTLILTTTKRFSEELTRYFQEKGEKVAYIHSDHKTFE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI+R LR G +D+++GINLLREG+D+PE LV ILDADKE FLR+ SLIQ +GRA+R Sbjct: 482 RNEILRKLRKGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRASR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N + KVI YAD ++KS++ I++ +R+ Q+++NK+H I PQ++ + I E I+ E Sbjct: 542 NSSGKVIFYADFVSKSMRETIEDNFEKRQIQIQYNKEHGIVPQTIIKDIPEPIEGHGFEH 601 Query: 741 AATTNISIDAQQLSLSKKKGKAHLK-------SLRKQMHLAADNLNFEEAARIRD 788 + +S ++KK KA LK L+KQM A+ +N+E A +RD Sbjct: 602 SIEYFLS--------NEKKSKAQLKEKEKLILDLKKQMLEASQKMNYERAIHLRD 648 >gi|294660207|ref|NP_852820.2| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(low)] gi|284811857|gb|AAP56388.2| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(low)] gi|284930281|gb|ADC30220.1| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(high)] Length = 664 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 306/661 (46%), Positives = 434/661 (65%), Gaps = 16/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+G QP AI +L+ GI+ +K Q LLG TG+GKTFT+A VIE Q+ +++A Sbjct: 6 FKLVSKNKPAGHQPEAIKKLVDGINKNKKYQTLLGATGTGKTFTIANVIEKTQKKTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP+NAVEYFVSY+D+YQPEAY+PRTD YIEK S N++I+ +R Sbjct: 66 HNKTLAAQLYLEFKELFPNNAVEYFVSYFDFYQPEAYIPRTDMYIEKSSVTNDEIEMLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 ++ SL RND IVV+SV+CIY + E + + LK+G++++ +L +L++ Y R Sbjct: 126 ASLNSLSTRNDVIVVASVACIYPAANPEDFDIYRIILKVGNTLKLSDLKENLIRLNYARS 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 GTFR+ GD ++IFP ++ D R+S FG+++EEI + +P I + + Sbjct: 186 PECNEPGTFRIKGDVVDIFPGYVSDHIIRLSFFGDELEEIRKIHPTDSSVIEKYTSYVLG 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y+ +TA+K I+EEL R+ E + + +L+EAQRL+QR YD++ ++ G C Sbjct: 246 PANEYILNFERKDTAIKRIQEELMFRVQEFKNQQKLVEAQRLQQRTEYDIDAIKEFGFCN 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+ +L R G P TLF++ +D L+ +DESH+++PQ+ GM+ D RK TL EY Sbjct: 306 GIENYAFHLELREKGSTPWTLFDFFGDDWLMVIDESHISVPQVKGMFNTDKSRKTTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS ++NRPL ++E++ I VSATP E++ I+EQI+RPTGL+DP VE Sbjct: 366 GFRLPSALENRPLNYDEFSNKSDQVIFVSATPNDEEIKLSNNEIIEQIVRPTGLLDPTVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q+ D+ +E+ + R +TV T +MAEDLTEYL ERN + Y+H+E+KTLE Sbjct: 426 IRPRLDQINDLMNELKKQKDKNERTFITVTTIKMAEDLTEYLKERNFKCAYIHNELKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R I+ DLR GK+D +VGINLLREGLDIPE LV I DADK G+ RS +LIQTIGRAAR Sbjct: 486 RSLILNDLRRGKYDCVVGINLLREGLDIPEVSLVCIFDADKPGYFRSDKALIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737 N N +VI+YAD +TK++++A+DET RRR+ Q + NK H I P++ +I PI L Sbjct: 546 NQNGRVIMYADEMTKAMKIAVDETNRRRKIQEKFNKDHKITPKT-------IIKPIYDDL 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLK---SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ I + + +K KG +K LR +M AA N N+E AA +RD I L+ Sbjct: 599 KNKASHKQIE---EVMRKTKAKGDKFIKMIEDLRNEMLEAAKNQNYEHAASLRDLIIELE 655 Query: 795 S 795 + Sbjct: 656 T 656 >gi|195941954|ref|ZP_03087336.1| excinuclease ABC subunit B [Borrelia burgdorferi 80a] gi|223889305|ref|ZP_03623892.1| excinuclease ABC, B subunit [Borrelia burgdorferi 64b] gi|224534121|ref|ZP_03674703.1| excinuclease ABC, B subunit [Borrelia burgdorferi CA-11.2a] gi|225550272|ref|ZP_03771231.1| excinuclease ABC, B subunit [Borrelia burgdorferi 118a] gi|226321300|ref|ZP_03796828.1| excinuclease ABC, B subunit [Borrelia burgdorferi Bol26] gi|223885226|gb|EEF56329.1| excinuclease ABC, B subunit [Borrelia burgdorferi 64b] gi|224512743|gb|EEF83112.1| excinuclease ABC, B subunit [Borrelia burgdorferi CA-11.2a] gi|225369140|gb|EEG98594.1| excinuclease ABC, B subunit [Borrelia burgdorferi 118a] gi|226233332|gb|EEH32083.1| excinuclease ABC, B subunit [Borrelia burgdorferi Bol26] Length = 668 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + GRL+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|284931048|gb|ADC30986.1| excinuclease ABC subunit B [Mycoplasma gallisepticum str. F] Length = 664 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 306/661 (46%), Positives = 433/661 (65%), Gaps = 16/661 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+G QP AI +L+ GI+ +K Q LLG TG+GKTFT+A VIE Q+ +++A Sbjct: 6 FKLVSKNKPAGHQPEAIKKLVDGINKNKKYQTLLGATGTGKTFTIANVIEKTQKKTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FP+NAVEYFVSY+D+YQPEAY+PRTD YIEK S N++I+ +R Sbjct: 66 HNKTLAAQLYLEFKELFPNNAVEYFVSYFDFYQPEAYIPRTDMYIEKSSVTNDEIEMLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 ++ SL RND IVV+SV+CIY + E + + LK+G++++ +L +L++ Y R Sbjct: 126 ASLNSLSTRNDVIVVASVACIYPAANPEDFDIYRIILKVGNTLKLSDLKENLIRLNYARS 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 GTFR+ GD ++IFP ++ D R+S FG+++EEI + +P I + + Sbjct: 186 PECNEPGTFRIKGDVVDIFPGYVNDHIIRLSFFGDELEEIRKIHPTDSSVIEKYTSYVLG 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y+ +TA+K I+EEL R+ E + + +L+EAQRL+QR YD++ ++ G C Sbjct: 246 PANEYILNFERKDTAIKRIQEELMFRVQEFKNQQKLVEAQRLQQRTEYDIDAIKEFGFCN 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+ +L R G P TLF++ D L+ +DESH+++PQ+ GM+ D RK TL EY Sbjct: 306 GIENYAFHLELREKGSTPWTLFDFFGNDWLMVIDESHISVPQVKGMFNTDKSRKTTLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS ++NRPL ++E++ I VSATP E++ I+EQI+RPTGL+DP VE Sbjct: 366 GFRLPSALENRPLNYDEFSNKSDQVIFVSATPNDEEIKLSNNEIIEQIVRPTGLLDPTVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR Q+ D+ +E+ + R +TV T ++AEDLTEYL ERN + Y+H+E+KTLE Sbjct: 426 IRPRLDQINDLMNELKKQKDKNERTFITVTTIKIAEDLTEYLKERNFKCAYIHNELKTLE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R I+ DLR GK+D +VGINLLREGLDIPE LV I DADK G+ RS +LIQTIGRAAR Sbjct: 486 RSLILNDLRRGKYDCVVGINLLREGLDIPEVSLVCIFDADKPGYFRSDKALIQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737 N N +VI+YAD +TK++++A+DET RRRE Q + NK H I P++ +I PI L Sbjct: 546 NQNGRVIMYADEMTKAMKIAVDETNRRREIQEKFNKDHKITPKT-------IIKPIYNDL 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLK---SLRKQMHLAADNLNFEEAARIRDEIKRLK 794 A+ I + + +K KG +K LR +M AA N N+E AA +RD I L+ Sbjct: 599 RNKASHKQIE---EAMRKTKAKGDKFIKMIEDLRNEMLEAAKNQNYEHAASLRDLIIELE 655 Query: 795 S 795 + Sbjct: 656 T 656 >gi|225551693|ref|ZP_03772637.1| excinuclease ABC, B subunit [Borrelia sp. SV1] gi|225371720|gb|EEH01146.1| excinuclease ABC, B subunit [Borrelia sp. SV1] Length = 668 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 315/667 (47%), Positives = 450/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + +E+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIREISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSIKGDVVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYKNVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK+ L +GFRLP+ ++NRPL+++E++ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKSNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|216264228|ref|ZP_03436220.1| excinuclease ABC, B subunit [Borrelia burgdorferi 156a] gi|215980701|gb|EEC21508.1| excinuclease ABC, B subunit [Borrelia burgdorferi 156a] Length = 668 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + GRL+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|226320883|ref|ZP_03796435.1| excinuclease ABC, B subunit [Borrelia burgdorferi 29805] gi|226233749|gb|EEH32478.1| excinuclease ABC, B subunit [Borrelia burgdorferi 29805] Length = 668 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + GRL+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFESLINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|225549368|ref|ZP_03770340.1| excinuclease ABC, B subunit [Borrelia burgdorferi 94a] gi|225369996|gb|EEG99437.1| excinuclease ABC, B subunit [Borrelia burgdorferi 94a] Length = 668 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + GRL+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGFVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|221217593|ref|ZP_03589062.1| excinuclease ABC, B subunit [Borrelia burgdorferi 72a] gi|221192539|gb|EEE18757.1| excinuclease ABC, B subunit [Borrelia burgdorferi 72a] Length = 668 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 316/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKNNGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|224531992|ref|ZP_03672624.1| excinuclease ABC, B subunit [Borrelia valaisiana VS116] gi|224511457|gb|EEF81863.1| excinuclease ABC, B subunit [Borrelia valaisiana VS116] Length = 664 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 315/662 (47%), Positives = 442/662 (66%), Gaps = 15/662 (2%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIKNSILLGNKYQTLKGVTGSGKTFTIANIIRDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +R I + R F + GD +EI+PS H E A+R+ + D +EI + Y +T +N+ Sbjct: 181 ERTLINLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVKIYRITSFSKKNLG 236 Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 T ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISHDLDLQCQYFKDNGKLVEAERLKQRVGYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G G P LF++ +D LLFVDESHVT+PQ GMY GD+ Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFSKDYLLFVDESHVTLPQFRGMYNGDYS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E++ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL ++ +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LV ILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVVILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ ++ AI+ET RRR+ Q+++NKK+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMHEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791 ++ L + NIS D ++ K+ K L L+ + A ++ FE+A +RD+IK Sbjct: 595 LEKEL--NNKYKNISYDFEKNISGKRLSKKKLINKLKFDLEEAVNDERFEDAIVLRDKIK 652 Query: 792 RL 793 L Sbjct: 653 EL 654 >gi|288927579|ref|ZP_06421426.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 317 str. F0108] gi|288330413|gb|EFC68997.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 317 str. F0108] Length = 685 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 319/670 (47%), Positives = 451/670 (67%), Gaps = 17/670 (2%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL +G+ +K Q+LLGVTGSGKTFTMA VI P +V++ Sbjct: 11 FKLTSKYKPTGDQPEAIKQLTEGLERGDKAQVLLGVTGSGKTFTMANVIAQHNVPTLVLS 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 71 HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 130 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D +VVSSVSCIYG+G + I+ L G +++ E L LV Y R Sbjct: 131 RAVSALLSGRKDVVVVSSVSCIYGMGGPTAMESGIISLSKGQRIDRNEFLRKLVDSLYVR 190 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD++++ ++ D R++ + ++I+ I E LT +I KI Sbjct: 191 NDIDLQRGNFRVKGDTVDVAMAY-SDNLLRITWWDDEIDSIEEVDSLTYHRIERFNDYKI 249 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 250 YPANLFVTTKDQTEHAIRCIQDDLVKQIDFFNELGDGIKAQRIKERVEYDMEMMKELGHC 309 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG+ P L ++ P+D L+ +DESHV++PQ+ GMY GD RK L E Sbjct: 310 SGIENYSRYFDGRQPGQRPYCLLDFFPKDYLMIIDESHVSVPQLGGMYGGDRARKQNLVE 369 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLP+ DNRPLRFEE++ L I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 370 FGFRLPAAFDNRPLRFEEFHNLINQVIYVSATPADYELGEAEGVVVEQLIRPTGLLDPEI 429 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ EI + + R+L+T LTKRMAE+LTEYL + ++ Y+HS+V TL Sbjct: 430 VVRPSENQIDDLLAEILERSDKNERVLVTTLTKRMAEELTEYLLDHGVKTNYIHSDVATL 489 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+ I+ LR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 490 DRVRIMNALRAGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 549 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPIL 737 RNVN KVI+YADTIT+S+Q IDET RRR Q+++N +H+I PQ + + I + + Sbjct: 550 RNVNGKVIMYADTITQSMQRTIDETARRRTIQMQYNAEHHITPQQIVKDIKGALTGNTTT 609 Query: 738 LEDA------ATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 +E A A + DA + +++++ + + + M AA L+F +AA Sbjct: 610 VETAKGYRSQAGGYVEPDAVAFAADPIVERMTRQQLEKSIANTTALMKQAAKELDFIQAA 669 Query: 785 RIRDEIKRLK 794 + RDEI RL+ Sbjct: 670 QYRDEIARLQ 679 >gi|312148059|gb|ADQ30718.1| excinuclease ABC, B subunit [Borrelia burgdorferi JD1] Length = 668 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 316/667 (47%), Positives = 447/667 (67%), Gaps = 21/667 (3%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 I FF ++++Y P+GDQP AI ++ I K Q L GVTGSGKTFT+A +I+ + RPA+ Sbjct: 2 IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP D +IEKE++IN +I+ Sbjct: 61 VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R SL +R D IVV++VS IY +GS + + + + +G + KE+ V+ Y Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374 +R + + R F + GD +EI+PS H E A+R+ + D +EI E Y ++ +N+ Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236 Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 + ++A S++V P + A+ I +L ++ + G+L+EA+RL+QR+ YDLEM Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDSGKLVEAERLKQRVEYDLEM 296 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492 L TG C IENYS+YL+G + E P LF++ P+D LLFVDESHVT+PQ GMY GD Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355 Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 RK L +GFRLP+ ++NRPL+++E+ L + VSATPG E E+ ++V+QIIRPT Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 GLVDP + R + Q+ED+Y EI R+L+T LTK+M+EDLTEYL +R +Y+ Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 HSE+ TLER+E+I LR + DV+VGINLLREGLDIPE LVAILDADK GFLRS TSLI Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 QTIGRAARN N VI+Y D I+ +++ AI ET RRR+ Q+++N+K+NI P+++ +KI + Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIGETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594 Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 ++ L + N+ D +++ LSKKK + L+ + A ++ FE+A +RD Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649 Query: 789 EIKRLKS 795 +IK L S Sbjct: 650 KIKELSS 656 >gi|149189665|ref|ZP_01867947.1| excinuclease ABC subunit B [Vibrio shilonii AK1] gi|148836477|gb|EDL53432.1| excinuclease ABC subunit B [Vibrio shilonii AK1] Length = 658 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 291/594 (48%), Positives = 414/594 (69%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AIA+L+ GI + + Q L GVTGSGKTFTMA +I ++RP +++A Sbjct: 6 FILHSAYPPSGDQPEAIARLISGIEAGKSHQTLQGVTGSGKTFTMANIIHRLKRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE +FFP NAVEYFVSYYDY+QPE Y+P +D +I K+S+INEQ++R+R Sbjct: 66 HNKTLASQLYSEMCHFFPENAVEYFVSYYDYFQPEVYIPGSDRFIRKDSAINEQLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+SL+ER D IVV+SVS +YG+G ++Y + + L +G+++++ +L L + QY Sbjct: 126 SATKSLIERRDVIVVASVSSVYGLGDPQAYRDLQISLAVGEALDKADLAERLARLQYTLT 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + R FR+ GD I++FP+ A R+++ I+ + P+ G +++ KI Sbjct: 186 EPKLERAGFRIRGDKIDVFPADSAQDAIRITLNNGVIQHLDWVDPIAGTLLKSCTEYKIS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + + A + I+ E++ R+ EL +E RL EA RL +R +D+EM++ G C Sbjct: 246 PKTLYASSPQKVRKASELIRIEMEQRVKELNEENRLTEAARLYERCMHDIEMMQQYGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+ YL R+P PP TL +Y+P+D L+F+DESHV +PQIS M + D RK TL +Y Sbjct: 306 GIENYACYLNERDPELPPTTLMDYLPKDGLVFIDESHVMVPQISAMSKSDLSRKDTLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS ++NRPL F E+ +P TI VSATPG +E+++ G++VEQIIRPTGL+DP VE Sbjct: 366 GFRLPSALNNRPLTFNEFEKAKPQTIFVSATPGKYEVQRSGGVVVEQIIRPTGLLDPEVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R + +ED+ EI R+L+T LTK AE L +++ E+ IRVRY+HS++KT E Sbjct: 426 VRPSANNMEDLLKEIRQRTSNDERVLVTTLTKVSAESLNDHMAEQGIRVRYLHSDIKTSE 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R++II LR G+FDVL+GINLLREGLDIPE LVAILDAD GFLRS +LIQ IGRAAR Sbjct: 486 RVDIINGLRAGEFDVLIGINLLREGLDIPEASLVAILDADHAGFLRSVEALIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 N N K ILYAD IT +++ AIDE+ +RR++Q +N+ + I P + + K+ ++ Sbjct: 546 NANGKAILYADRITPAMKQAIDESLQRRKRQQVYNQANAIVPATSRRKVASAME 599 >gi|308189817|ref|YP_003922748.1| UvrABC system protein B [Mycoplasma fermentans JER] gi|319777032|ref|YP_004136683.1| uvrabc system protein b [Mycoplasma fermentans M64] gi|238809815|dbj|BAH69605.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624559|gb|ADN68864.1| UvrABC system protein B [Mycoplasma fermentans JER] gi|318038107|gb|ADV34306.1| UvrABC system protein B [Mycoplasma fermentans M64] Length = 669 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 295/662 (44%), Positives = 431/662 (65%), Gaps = 3/662 (0%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 ++ F++ + Y P+GDQP AI +L++ I + Q+L GVTGSGKTFT+A VI+ RP + Sbjct: 1 MSIFKLISPYKPAGDQPEAIKELVENIKDNMQHQVLKGVTGSGKTFTIANVIKEFDRPVL 60 Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257 V++ NK LA+QLYSE K FFPHN VEY+VSY+DYY+PEAY+P +DTYI+K+S N+ +D Sbjct: 61 VLSHNKTLASQLYSELKGFFPHNRVEYYVSYFDYYRPEAYIPSSDTYIDKQSQNNKDLDA 120 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 MR SA ++L RND I+V+SVS IYG + Y + +++G ++++E LV++ Y Sbjct: 121 MRMSAMNAVLTRNDTIIVASVSAIYGALNPSEYYASVFPIEVGMQIKRQEFFKKLVQRNY 180 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 KR I + GTF GD++ I P+ ++ RV FG++I+ I+ P+T + I Sbjct: 181 KRNQIDLELGTFSAKGDAVYIQPADSDEYQIRVDFFGDEIDSIATCDPITKEVIERFSHY 240 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I+ Y R ++ A I EL R+ + +L+EAQR+++R+ D++ L G Sbjct: 241 TIFPGDAYTVDRSVIDEACDKILVELDERIKYFKANNQLIEAQRIQERVEKDVDSLREFG 300 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 C IENY+RY+ R GE P TL +Y + LLF+DESH+ IPQ++GMY GD+ RK Sbjct: 301 MCPGIENYARYMDRREAGERPYTLLDYFKGKKPLLFIDESHMMIPQLNGMYHGDYSRKKN 360 Query: 497 LAEYGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 L +YGFRLPS +DNRPL F+E+ N T+ +SATP +EL++ G++ + +RPTGL+ Sbjct: 361 LVDYGFRLPSALDNRPLLFKEFENEFDFQTVYISATPDDYELDKTHGLLTKLFVRPTGLL 420 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP +EIR ++ Q+ED+YDE+ + R L+ TKR+AE+L+ Y E+N ++ Y+HSE Sbjct: 421 DPKIEIRLSKNQIEDIYDELQRQKDKNERTLILTTTKRLAEELSRYFLEKNEKIAYIHSE 480 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 T ER EI+R LR G +D ++GINLLREG+D+PE L+ +LDADKEGF+RS SLIQ Sbjct: 481 HNTFERNEILRKLRKGVYDTVIGINLLREGVDLPEVSLIMVLDADKEGFMRSTKSLIQIS 540 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN N +VI YAD TKS+Q I++ +R+ Q+ +NKKHNI P+++ + I E I Sbjct: 541 GRAARNANGRVIFYADKTTKSMQECIEDNEIKRKMQIAYNKKHNITPKTIIKPIAEPIHG 600 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +E + + + S KK K L K LR+QM+ AA L++E A +RD I L+ Sbjct: 601 EGIEGEIEFFFKNEKRNQTQSGKKAKEELIKRLREQMNQAAKELDYERAIELRDIILELQ 660 Query: 795 SS 796 + Sbjct: 661 AG 662 >gi|119953614|ref|YP_945824.1| excinuclease ABC subunit B [Borrelia turicatae 91E135] gi|119862385|gb|AAX18153.1| excinuclease ABC subunit B [Borrelia turicatae 91E135] Length = 653 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 304/656 (46%), Positives = 436/656 (66%), Gaps = 10/656 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQ AI ++ + I K Q L GVTGSGKTFT+A +I ++RPA++++ Sbjct: 3 FCLRSDYSPAGDQSKAIREIEESILLDNKYQTLKGVTGSGKTFTIANIIRNLERPALIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP D YIEKE++INE I+ R Sbjct: 63 HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SL R D IVV++VS IY +GS E + +G + KE+ VK QY+R Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPEFFKNAAHAFFVGQKISIKEIADIFVKLQYERT 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + + F + GD IE++PS+ D A+++ + ++I IS PLT + + + + Sbjct: 183 LMNLEHDKFSIKGDVIEVWPSNEHGDFAYKIYLDFDEIVRISRINPLTKKILGVTDEFTL 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 +A S++V P + A+ I+ +L+++ ++ G+ +EA+RL+QR+ YD+EML TGSC Sbjct: 243 FAKSYFVIPYENILDALSKIQVDLEIQYHSFKENGKFVEAERLKQRVEYDIEMLRETGSC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 Q IENYS+Y + + + P LF++ P+D LLF+DESHVT+PQ GMY GD+ RK L Sbjct: 303 QGIENYSKYFSD-SEMDRPYCLFDFFPKDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--GIIVEQIIRPTGLVDP 557 +GFRLPS + NRPL++ E+ L + VSATPG LE+C+ +I EQIIRPTGL+DP Sbjct: 362 FGFRLPSALANRPLKYHEFESLINQVVFVSATPG---LEECEKSSVIAEQIIRPTGLIDP 418 Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 + +R + Q+ED+Y+EI ++L+T LTK+MAEDLT+YL +I+ RY+H+E Sbjct: 419 EIILRVSDGQMEDLYNEIQKRVALNEKVLITTLTKKMAEDLTDYLLSLDIKARYLHAEFN 478 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +ER++II LR + DV+VGINLLREGLDIPE LV ILDADK GFLRS TSLIQ IGR Sbjct: 479 AIERVDIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSTTSLIQMIGR 538 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN N VI+Y D ++ +++ AIDET RRR Q+E+NKK+NI P+++ +K+ +++ L Sbjct: 539 AARNSNGCVIMYYDHVSCAMREAIDETNRRRNIQIEYNKKNNIVPRTIIKKVQNILEKEL 598 Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + +I + +S K K + L+ ++ A + FE+A +RD+I+ L Sbjct: 599 KNETVDYDI---GKIISDDKLSKKDLIIKLKFKLEEAVCDERFEDAIFLRDKIREL 651 >gi|126661654|ref|ZP_01732670.1| excinuclease ABC subunit B [Cyanothece sp. CCY0110] gi|126617061|gb|EAZ87914.1| excinuclease ABC subunit B [Cyanothece sp. CCY0110] Length = 502 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/500 (56%), Positives = 373/500 (74%), Gaps = 1/500 (0%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 +PA+V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN+ Sbjct: 4 KPALVLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSASIND 63 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 +ID +RHSATRSL ER D IVV+S+SCIYG+G Y + V L++G V Q++LL LV Sbjct: 64 EIDMLRHSATRSLFERKDVIVVASISCIYGLGMPAEYLKASVPLEVGKEVNQRQLLRDLV 123 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY R D+ + RG FRV GD +EI P++ ED RV FG++I+ I P+TG+ + + Sbjct: 124 TVQYSRNDLDLQRGRFRVKGDVLEIVPAY-EDRVVRVEFFGDEIDAIRYLDPVTGEILNS 182 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 ++ I IY H+V P L A + I+ EL+ +++ LEK G+LLEAQR++QR YDLE+L Sbjct: 183 LKNINIYPARHFVIPEEQLEAACQAIEIELQEQILNLEKAGKLLEAQRIDQRTRYDLELL 242 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENYSR+L GR PG PP L +Y P+D LL VDESHVT+PQI GMY GD R Sbjct: 243 REVGYCNGVENYSRHLAGRKPGSPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQAR 302 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K L ++GFRLPS DNRPL+ +E+ I VSATPG+WE+EQ + ++EQIIRPTG Sbjct: 303 KKVLIDHGFRLPSAADNRPLKSDEFWDKVNQCIFVSATPGNWEIEQSEDRVIEQIIRPTG 362 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 ++DP + +RS QV+D+ EI ++ R+L+T LTKRMAEDLTEY ER+++V+Y+H Sbjct: 363 VLDPEIFVRSTEGQVDDLLGEIKERVKREERVLITTLTKRMAEDLTEYFQERDVKVQYLH 422 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+K++ERIEI++ LR G+FDVL+G+NLLREGLD+PE LVAILDADKEGFLR++ SLIQ Sbjct: 423 SEIKSIERIEILQALRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQ 482 Query: 674 TIGRAARNVNSKVILYADTI 693 TIGRAAR+VN + ILY D + Sbjct: 483 TIGRAARHVNGQAILYGDNL 502 >gi|260911826|ref|ZP_05918393.1| excision endonuclease subunit UvrB [Prevotella sp. oral taxon 472 str. F0295] gi|260634037|gb|EEX52160.1| excision endonuclease subunit UvrB [Prevotella sp. oral taxon 472 str. F0295] Length = 677 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 323/677 (47%), Positives = 451/677 (66%), Gaps = 31/677 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI QL +G+ + Q+LLGVTGSGKTFTMA VI P +V++ Sbjct: 3 FKLTSKYKPTGDQPEAIRQLTEGLDRGDMSQVLLGVTGSGKTFTMANVIAQHNVPTLVLS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R Sbjct: 63 HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 A +LL R D +VVSSVSCIYG+G + I+ L G +++ E L LV Y R Sbjct: 123 RAVSALLSGRKDVVVVSSVSCIYGMGGPTAMESGIISLSKGQRIDRNEFLRKLVDSLYVR 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 DI + RG FRV GD++++ ++ D R++ + ++I+ I E LT +I + KI Sbjct: 183 NDIDLQRGNFRVKGDTVDVAMAY-SDNLLRITWWDDEIDSIEEVDSLTYHRIESFNDYKI 241 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y + +VT + A++ I+++L ++ + G ++AQR+++R+ YD+EM++ G C Sbjct: 242 YPANLFVTTKDQTERAIRCIQDDLVSQIDFFNELGDGIKAQRIKERVEYDMEMMKELGHC 301 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRY GR PG+ P L ++ P+D L+ +DESHV++PQ+ GMY GD RK L E Sbjct: 302 SGIENYSRYFDGRQPGQRPYCLLDFFPKDYLMIIDESHVSVPQLGGMYGGDRARKQNLVE 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLP+ DNRPLRFEE++ L I VSATP +EL + +G++VEQ+IRPTGL+DP + Sbjct: 362 FGFRLPAAFDNRPLRFEEFHSLINQVIYVSATPADYELGEAEGVVVEQLIRPTGLLDPEI 421 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q++D+ EI +++ R+L+T LTKRMAE+LTEYL + ++ Y+HS+V TL Sbjct: 422 IVRPSENQIDDLLAEILERSEKNERVLVTTLTKRMAEELTEYLLDHGVKTNYIHSDVATL 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+ I+ LR G++DVLVG+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAA Sbjct: 482 DRVRIMNALRAGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732 RNVN KVI+YADTIT+S+Q IDET RRR Q+++N H+I PQ + + I Sbjct: 542 RNVNGKVIMYADTITQSMQRTIDETARRRTIQMQYNADHHIIPQQIVKDIKGALTGNAPT 601 Query: 733 --------------IDPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 ++P + AA + + QQL +K A+ +L KQ AA + Sbjct: 602 VVTSKSYRSQEGGYVEPDAVAFAADPIVERMTRQQL----EKSIANTTALMKQ---AAKD 654 Query: 778 LNFEEAARIRDEIKRLK 794 L+F +AA+ RDEI RL+ Sbjct: 655 LDFIQAAQYRDEIARLQ 671 >gi|203284737|ref|YP_002222477.1| excinuclease ABC, subunit B [Borrelia duttonii Ly] gi|201084180|gb|ACH93771.1| excinuclease ABC, subunit B [Borrelia duttonii Ly] Length = 654 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 304/654 (46%), Positives = 429/654 (65%), Gaps = 6/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQP AI ++ + I + Q L GVTGSGKTFT+A +I ++RP+++++ Sbjct: 3 FCLKSDYFPAGDQPKAIREIKESILRNNRYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP D YIEKE++INE I+ R Sbjct: 63 HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SL R D IVV++VS IY +GS + +G + KE+ VK QY+R Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPIFFKSAANVFFVGQKISIKEIADVFVKLQYERT 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F + GD +EI+PS+ D A+R+ + + I +I+ PLT +K+ + Sbjct: 183 FTNLEHDKFSIKGDVVEIWPSNEHGDFAYRIYLDFDKIMQINRISPLTKKKLGFANEFTL 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 +A S++V P + A+ I+ +L+M+ ++ +L+EA+RL+QR+ YD+EML TGSC Sbjct: 243 FAKSYFVIPYEKILNALPEIQVDLEMQYRYFQENNKLVEAERLKQRVKYDIEMLRETGSC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 Q IENYS Y G + + P LF++ PED LLF+DESHVT+PQ GMY GD+ RK L Sbjct: 303 QGIENYSAYFGG-DEIDRPYCLFDFFPEDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS + NRPL++ E+ L + VSATPG E E+ +IVEQIIRPTGL+DP + Sbjct: 362 FGFRLPSALKNRPLKYYEFESLINQAVFVSATPGLEESEKS-SVIVEQIIRPTGLIDPEI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q+ED+Y EI +IL+T LTK+M+EDLT+YL I+ RY+H+E + Sbjct: 421 ILRPSDGQIEDIYSEIQRRVVLNEKILITTLTKKMSEDLTDYLLTLGIKARYLHAEFNAI 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ II LR + DV+VGINLLREGLDIPE LV ILDADK GFLRS +SLIQ IGRAA Sbjct: 481 ERVNIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSASSLIQIIGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + VI+Y D I+ ++Q AI+ET RRR Q+E+NK +NI P+++ +K+ +++ Sbjct: 541 RNSHGCVIMYYDQISCAMQEAIEETRRRRNIQIEYNKANNIVPKTIVKKVQSILEKEFKN 600 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + N+ +LS++ LK +++ A ++ FE+A +RD+IK L Sbjct: 601 ETLDYNVEKIISDNNLSREDLIIKLKF---ELNEAVEDERFEDAIFLRDKIKEL 651 >gi|203288263|ref|YP_002223278.1| excinuclease ABC, subunit B [Borrelia recurrentis A1] gi|201085483|gb|ACH95057.1| excinuclease ABC, subunit B [Borrelia recurrentis A1] Length = 654 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 303/654 (46%), Positives = 428/654 (65%), Gaps = 6/654 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F +++DY P+GDQP AI ++ + I + Q L GVTGSGKTFT+A +I ++RP+++++ Sbjct: 3 FCLKSDYFPAGDQPKAIREIKESILRNNRYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP D YIEKE++INE I+ R Sbjct: 63 HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SL R D IVV++VS IY +GS + +G + KE+ VK QY+R Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPIFFKSAANVFFVGQKISIKEIADVFVKLQYERT 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F + GD +EI+PS+ D A+R+ + + I +I+ PLT +K+ + Sbjct: 183 FTNLEHDKFSIKGDVVEIWPSNEHGDFAYRIYLDFDKIMQINRISPLTKKKLGFANEFTL 242 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 +A S++V P + A+ I+ +L+M+ ++ +L+EA+RL+QR+ YD+EML TGSC Sbjct: 243 FAKSYFVIPYEKILNALPEIQVDLEMQYRYFQENNKLVEAERLKQRVKYDIEMLRETGSC 302 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 Q IENYS Y G + + P LF++ PED LLF+DESHVT+PQ GMY GD+ RK L Sbjct: 303 QGIENYSAYFGG-DEIDRPYCLFDFFPEDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361 Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 +GFRLPS + NRPL++ E+ L + VSATPG E ++ +IVEQIIRPTGLVDP + Sbjct: 362 FGFRLPSALKNRPLKYYEFESLINQAVFVSATPGLEESKKS-SVIVEQIIRPTGLVDPEI 420 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 +R + Q+ED+Y EI +IL+T LTK+M+EDLT+YL I+ RY+H+E + Sbjct: 421 ILRPSDGQIEDIYSEIQRRVVLNEKILITTLTKKMSEDLTDYLLTLGIKARYLHAEFNAI 480 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER+ II LR + DV+VGINLLREGLDIPE LV ILDADK GFLRS +SLIQ IGRAA Sbjct: 481 ERVNIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSASSLIQIIGRAA 540 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + VI+Y D I+ ++Q AI++T RRR Q+E+NK +NI P+++ +K+ +++ Sbjct: 541 RNSHGCVIMYYDQISCAMQEAIEKTRRRRNIQIEYNKANNIVPKTIVKKVQSILEKEFKN 600 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 N+ +LS++ LK +++ A ++ FE+A +RD+IK L Sbjct: 601 KTLDYNVEKIISDNNLSREDLIIKLKF---ELNEAVEDERFEDAIFLRDKIKEL 651 >gi|240047166|ref|YP_002960554.1| excinuclease ABC subunit B [Mycoplasma conjunctivae HRC/581] gi|239984738|emb|CAT04712.1| UvrABC system protein B [Mycoplasma conjunctivae] Length = 654 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 292/655 (44%), Positives = 431/655 (65%), Gaps = 6/655 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI+ L+ GI + ++ Q+LLGVTGSGKTFTMA VI + RP +V++ Sbjct: 2 FKLVSKYAPSGDQPKAISSLVNGIKNNKENQVLLGVTGSGKTFTMANVISQINRPVLVLS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSEFK FFP N VEYFVS +D+Y+PEAY+P D Y++K S N ++ MR Sbjct: 62 HNKTLASQLYSEFKEFFPENRVEYFVSNFDFYRPEAYLPGKDIYVDKTSKTNMDLEAMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L RND IVVSSV+ IYG + Y + + ++ ++ + L +LVK Y+R Sbjct: 122 SALNALSMRNDTIVVSSVAAIYGALNPTEYKEGFLNIEANQKIKIQNLAINLVKIGYQRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I + G F + GD +E+ P+ + R+S FG+ IE I +P+ + R+ IY Sbjct: 182 NIDLKPGNFSIKGDILELAPAWDDSFNIRISFFGDLIESIDTIHPIEKKLFRSFHAYTIY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y R T+ A+K I+ EL+ RL E EG+L+E QRLE+R+ D++ L G C Sbjct: 242 PASAYTVKRDTITQAIKTIEIELEYRLKYFENEGKLVEKQRLEERVNNDIDSLREFGFCS 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R++ GR GE P TL +Y+P+D+L+F+DESH+ +PQ++GMY GD RK L +Y Sbjct: 302 GIENYARHIDGRQEGEKPYTLLDYLPKDALIFIDESHIMVPQLNGMYEGDRSRKTNLVDY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F+E+ I VSATPG +EL+ G ++ QIIRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPLKFKEFEKYEQQKIFVSATPGQYELDLVDGEVIPQIIRPTGLLDPIIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTL 619 + Q+E +Y+ + + R L+ TKR++E++++YL E+ +V Y+HS+ T Sbjct: 422 VVDKTNQMEKIYNYLQQQKAKDERSLILTTTKRLSEEISKYLQEEKKQKVYYIHSDFTTF 481 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER EI+ LR G +D ++GINLLREG+D+PE L+ +LDAD E F RS++SLIQ GRAA Sbjct: 482 ERDEILIKLRKGVYDAVIGINLLREGVDLPEVSLILVLDADHESFFRSRSSLIQIAGRAA 541 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN + KVI +AD I++S++ I++ +RE Q+++N ++NI P+++ + I + ++P Sbjct: 542 RNDHGKVIFFADKISRSMKEVIEDNKNKREIQIKYNIENNITPKTIIKPIPQRLNP---- 597 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +IS ++ +KK+ K+H++ LR +M AA N NFE A IRD I L+ Sbjct: 598 -KTEMSISRIIKKDKGNKKEIKSHIEDLRNEMKKAAANHNFELAIEIRDLIAELE 651 >gi|291320334|ref|YP_003515596.1| UvrABC system protein B [Mycoplasma agalactiae] gi|290752667|emb|CBH40640.1| UvrABC system protein B [Mycoplasma agalactiae] Length = 669 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 297/659 (45%), Positives = 422/659 (64%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L++GI + K Q+L GVTGSGKTFT+A VI RP +V++ Sbjct: 4 FKLHSSYAPAGDQPKAINELVEGIKNNAKEQVLQGVTGSGKTFTIANVINQFNRPVLVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLY+E + FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S N +ID MR Sbjct: 64 HNKTLASQLYTELRGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDSMRM 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA S+L RND IVV+SVS IYG + Y + + G + + + + SL+K+ Y R Sbjct: 124 SAVNSILSRNDTIVVASVSAIYGALNPYEYENNFITIHKGQKISRNDFIRSLIKRNYFRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ G+F V GD + I P + RV FG++IE I +P+T + + + ++ Sbjct: 184 DVNSELGSFAVKGDLVLIQPVYDNSFMIRVDFFGDEIESIKTMHPITKEVFASYDEFLLF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y L ++ K EL+ R+ +K RLLEAQR+++R+ DL+ L G+C Sbjct: 244 PGDAYTVNNDILKQTVELAKIELEERIAYFKKNNRLLEAQRIKERVERDLDSLAEFGTCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS YL R G+ P TL +Y + + ++F+DESH+ IPQ+ M++GD RK TL + Sbjct: 304 GIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMIPQLRAMFKGDRSRKQTLVD 363 Query: 500 YGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 YGFRLPS +DNRPL FEE+ N I +SATP +EL++ G++ +RPTGL++P Sbjct: 364 YGFRLPSALDNRPLTFEEFENSFDFQKIYISATPDEYELDKTHGVVTTLFVRPTGLLNPS 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R A+ Q+E++YDE+ ++G R L+ TK +AE+LT Y E+N ++ Y+HSE KT Sbjct: 424 IEVRPAKGQIENIYDELQKQKEKGERTLILTTTKSLAEELTRYFMEKNEKIAYIHSEHKT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER EI+R LR G +D +VGINLLREG+D+PE L+ +LDAD E F RS SLIQ GRA Sbjct: 484 FERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQITGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N +VI YAD+++KS+Q I + + R+ Q E+N KHNI P+++ + I E I + Sbjct: 544 ARNSNGRVIFYADSVSKSMQETILQNSEIRQIQEEYNLKHNIVPKTIIKPIPEPIHNQKM 603 Query: 739 EDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 DA + N S Q LSK + ++ LRKQM AA L++E A IRD I L+ Sbjct: 604 ADAISFYFKNSSSKNQDDKLSKDE---LIEKLRKQMEQAAKELDYERAMEIRDIIIELR 659 >gi|148377644|ref|YP_001256520.1| excinuclease ABC subunit B [Mycoplasma agalactiae PG2] gi|148291690|emb|CAL59076.1| UvrABC system protein B [Mycoplasma agalactiae PG2] Length = 669 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 297/659 (45%), Positives = 420/659 (63%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L++GI + K Q+L GVTGSGKTFT+A VI RP +V++ Sbjct: 4 FKLHSSYAPAGDQPKAINELVEGIKNNVKEQVLQGVTGSGKTFTIANVINQFNRPVLVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY+E K FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S N +ID MR Sbjct: 64 HNKTLAGQLYTELKGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDSMRM 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA S+L RND IVV+SVS IYG + Y + + G + + + + SL+K+ Y R Sbjct: 124 SAVNSILSRNDTIVVASVSAIYGALNPYEYENNFMTIHKGQKISRNDFIRSLIKRNYFRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ G+F V GD + I P + RV FG++IE I +P+T + + + ++ Sbjct: 184 DVNSELGSFAVKGDLVLIQPVYDNSFMIRVDFFGDEIESIKTMHPITKEVFASYDEFLLF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y L ++ + EL+ R+ EK RLLEAQR+++R+ DL+ L G+C Sbjct: 244 PGDAYTVNNDILKQTVELARIELEERIAYFEKNNRLLEAQRIKERVERDLDSLAEFGTCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS YL R G+ P TL +Y + + ++F+DESH+ IPQ+ M++GD RK L + Sbjct: 304 GIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMIPQLRAMFKGDRSRKQALVD 363 Query: 500 YGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 YGFRLPS +DNRPL FEE+ N I +SATP +EL++ G++ +RPTGL++P Sbjct: 364 YGFRLPSALDNRPLTFEEFENSFDFQKIYISATPDEYELDKTHGVVTTLFVRPTGLLNPS 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R A+ Q+E++YDE+ ++G R L+ TK +AE+LT Y E+N ++ Y+HSE KT Sbjct: 424 IEVRPAKGQIENIYDELQKQKEKGERTLILTTTKSLAEELTRYFMEKNEKIAYIHSEHKT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER EI+R LR G +D +VGINLLREG+D+PE L+ +LDAD E F RS SLIQ GRA Sbjct: 484 FERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQITGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N +VI YAD+++KS+Q I + + R+ Q E+N KHNI P+++ + I E I + Sbjct: 544 ARNSNGRVIFYADSVSKSMQETILQNSEIRQIQEEYNLKHNIVPKTIIKPIPEPIHNQKM 603 Query: 739 EDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 DA + N S Q LSK + ++ LRKQM AA L++E A IRD I L+ Sbjct: 604 ADAISFYFKNSSSKNQDGKLSKDE---LIEKLRKQMEQAAKELDYERAMEIRDIIIELR 659 >gi|157962112|ref|YP_001502146.1| excinuclease ABC subunit B [Shewanella pealeana ATCC 700345] gi|157847112|gb|ABV87611.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345] Length = 661 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 287/589 (48%), Positives = 399/589 (67%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y PSGDQP AIA+L+ GI S Q L GVTGSGKTFT+A +I ++RP I++A Sbjct: 6 FILHSNYTPSGDQPEAIARLVDGIDSGSSHQTLKGVTGSGKTFTVANIIHRLKRPTIILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE ++FFP NAVE+FVSYYDYYQPE Y+P +D +I K+S+INE ++R+R Sbjct: 66 HNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSAINEHLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T++L+ER D IVV+SVS IYG+G ++Y + V+L +G ++ +L+ L + QY R Sbjct: 126 STTKALIERRDVIVVASVSSIYGLGDPDAYRSLQVKLWLGQEIDLDDLIQRLERLQYTRC 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + I R TF V I+IFP+ E A V + + ++ ++GQ++ + + Sbjct: 186 NRTINRATFLVREGVIDIFPADSEHQALTVEIEAGRVNQLYWIDAISGQQLETIAEYCVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + A I +++ ++ L + RL EA RL +R DLE+L G C Sbjct: 246 PKTLYSVSIEQVELACGQIMSDMEQQVAILNADNRLTEAARLYERTVSDLELLRLQGYCP 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+ YL R+P PP TLF+Y+P+D LLF+DESHV IPQIS MY+ D RK TL ++ Sbjct: 306 GIENYASYLNQRDPQLPPTTLFDYLPKDGLLFIDESHVMIPQISAMYKSDQSRKNTLIDF 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F E+ ++P TI VSATP ++EL + + + +QIIRPTGL+DP +E Sbjct: 366 GFRLPSARNNRPLSFTEFESIKPQTIFVSATPSNYELSKSKQQVFKQIIRPTGLLDPEIE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + +ED+ EI L + R L+T LTK+ AE L ++L + I+V Y+HS++KT + Sbjct: 426 IRPSDNNLEDLVQEIALRLARNERTLVTTLTKKSAESLNDFLSAKGIKVSYLHSDIKTND 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII+ LR+G+ DVL+GINLLREGLDIPE LVA+LDAD GFLRS+ +LIQ IGRAAR Sbjct: 486 RVEIIKALRVGEIDVLIGINLLREGLDIPEASLVAVLDADTAGFLRSEQALIQIIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 N N K ILYAD +T ++Q AIDE+ RR Q+ +N + I P S K ++ Sbjct: 546 NENGKAILYADKVTTAMQSAIDESAERRGHQIIYNMANGIVPSSSKRRL 594 >gi|193216493|ref|YP_001999735.1| excinuclease ABC subunit B [Mycoplasma arthritidis 158L3-1] gi|8134791|sp|Q9ZB21|UVB2_MYCPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238692470|sp|B3PLX9|UVRB_MYCA5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|4097425|gb|AAD00088.1| UvrB exinuclease subunit B [Mycoplasma pulmonis] gi|193001816|gb|ACF07031.1| excinuclease ABC subunit B [Mycoplasma arthritidis 158L3-1] Length = 660 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 298/649 (45%), Positives = 424/649 (65%), Gaps = 5/649 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI L+ GI +++ Q+LLGVTGSGKTFT+A VI + RP+++++ Sbjct: 5 FVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPSLIIS 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE K FP N VEYFVSY+D+Y+PEAY+P++D YIEK S N++++ MR Sbjct: 65 HNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELEAMRM 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L R D IVV+SV+ IYG + + Y Q +++G +++K LL L + Y+R Sbjct: 125 SAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIGYERN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + +G F V GDSIEI P ++ D R+ MFGN+IE I+ PL+ + + + ++ Sbjct: 185 RMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKNMTLF 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y T+ + IK+EL R+ + +LLEAQR++ R DL+ L G Sbjct: 245 PATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEFGYTS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL GR PG+ P TLF+Y+P+DS++F+DESH+ IPQ+ GM+ GD RK +L EY Sbjct: 305 GIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLSLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ + I +SATPG +EL+ G IV Q IRPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I S Q+ED+YD + + R L+ TK+ AE+L+ +L E+ I+ Y+H K E Sbjct: 425 IHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRFKIFE 484 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI++ LR+GKFDV+VGINLL+EG+D+PE L+ +L+AD G +R SLIQ +GRAAR Sbjct: 485 RNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAAR 544 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739 N + KVI YA+ IT S++ I++ +R+ Q E+N+KHNI P+++ + I I + IL E Sbjct: 545 NDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNGILSE 604 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D + D Q+ +KK + +RK LA N FEEA IRD Sbjct: 605 DHSKYYGEKDLSQMKHNKKFID---QMVRKMTQLAKAN-KFEEAIEIRD 649 >gi|312601591|gb|ADQ90846.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 168] Length = 679 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 293/660 (44%), Positives = 430/660 (65%), Gaps = 7/660 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K+ F++ +Y PSGDQP AI L+ GI S +K Q+LLGVTGSGKTFTMA VI +P Sbjct: 23 KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 82 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P D Y+EK S N + Sbjct: 83 VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 142 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + MR SA +L+ RND IV++SV+ IYG + + Y + L++ ++ EL L + Sbjct: 143 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 202 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +Y+ I G F + GD +EIFP+ + RV FGN IE I+ +P++ I++ Sbjct: 203 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 262 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + Y + +N A+K IK EL +L EK +L+E QRL+ R+ D++ L Sbjct: 263 SFTVYPATAYSVKKNIINRAIKTIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 322 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENY+R++ GR GE P +L +Y+P+D L+F+DESH+ I QI GMY GD RK Sbjct: 323 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 382 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL +YG+RLPS +DNRPL+ E+ + I VSATP S+E+++ G IV QIIRPTGL+ Sbjct: 383 TLVDYGYRLPSALDNRPLKLSEFEEYQQAKIYVSATPASYEIDKANGEIVSQIIRPTGLI 442 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614 DP + I S + Q+E ++ + ++ R L+ TKR+AE++++YL E ++ V Y+HS Sbjct: 443 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 502 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ T ER EII LR G +D +VGINLLREG+DIPE L+ +L+A FLRS++SLIQ Sbjct: 503 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 562 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN + KVIL+ DT+T++I+ + +R+ Q+E+N+K+ I P+++K+ I + I+ Sbjct: 563 IGRAARNDHGKVILFTDTVTETIEKVLKNNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 622 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + IS ++ KK+ + ++K L K+M +AAD FEEA +IRD I +K Sbjct: 623 P------NSLKISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 676 >gi|72080975|ref|YP_288033.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 7448] Length = 659 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 292/660 (44%), Positives = 430/660 (65%), Gaps = 7/660 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K+ F++ +Y PSGDQP AI L+ GI S +K Q+LLGVTGSGKTFTMA VI +P Sbjct: 3 KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 62 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P D Y+EK S N + Sbjct: 63 VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 122 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + MR SA +L+ RND IV++SV+ IYG + + Y + L++ ++ EL L + Sbjct: 123 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 182 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +Y+ I G F + GD +EIFP+ + RV FGN IE I+ +P++ I++ Sbjct: 183 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 242 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + Y + +N A++ IK EL +L EK +L+E QRL+ R+ D++ L Sbjct: 243 SFTVYPATAYSVKKNIINRAIETIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 302 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C +ENY+R++ GR GE P +L +Y+P+D L+F+DESH+ I QI GMY GD RK Sbjct: 303 FGICSGVENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 362 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL +YG+RLPS +DNRPL+ E+ R I VSATP S+E+++ G IV QIIRPTGL+ Sbjct: 363 TLVDYGYRLPSALDNRPLKLSEFEEYRQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 422 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614 DP + I S + Q+E ++ + ++ R L+ TKR+AE++++YL E ++ V Y+HS Sbjct: 423 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 482 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ T ER EII LR G +D +VGINLLREG+DIPE L+ +L+A FLRS++SLIQ Sbjct: 483 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 542 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN + KVIL+ DT+T++I+ + + +R+ Q+E+N+K+ I P+++K+ I I+ Sbjct: 543 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPNSIN 602 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + IS ++ KK+ + ++K L K+M +AAD FEEA +IRD I +K Sbjct: 603 P------NSLKISKVLREKQKDKKEMEDYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 656 >gi|144575569|gb|AAZ54010.2| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 7448] Length = 661 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 292/660 (44%), Positives = 430/660 (65%), Gaps = 7/660 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K+ F++ +Y PSGDQP AI L+ GI S +K Q+LLGVTGSGKTFTMA VI +P Sbjct: 5 KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P D Y+EK S N + Sbjct: 65 VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + MR SA +L+ RND IV++SV+ IYG + + Y + L++ ++ EL L + Sbjct: 125 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +Y+ I G F + GD +EIFP+ + RV FGN IE I+ +P++ I++ Sbjct: 185 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + Y + +N A++ IK EL +L EK +L+E QRL+ R+ D++ L Sbjct: 245 SFTVYPATAYSVKKNIINRAIETIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C +ENY+R++ GR GE P +L +Y+P+D L+F+DESH+ I QI GMY GD RK Sbjct: 305 FGICSGVENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL +YG+RLPS +DNRPL+ E+ R I VSATP S+E+++ G IV QIIRPTGL+ Sbjct: 365 TLVDYGYRLPSALDNRPLKLSEFEEYRQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 424 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614 DP + I S + Q+E ++ + ++ R L+ TKR+AE++++YL E ++ V Y+HS Sbjct: 425 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 484 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ T ER EII LR G +D +VGINLLREG+DIPE L+ +L+A FLRS++SLIQ Sbjct: 485 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 544 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN + KVIL+ DT+T++I+ + + +R+ Q+E+N+K+ I P+++K+ I I+ Sbjct: 545 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPNSIN 604 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + IS ++ KK+ + ++K L K+M +AAD FEEA +IRD I +K Sbjct: 605 P------NSLKISKVLREKQKDKKEMEDYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 658 >gi|167623929|ref|YP_001674223.1| excinuclease ABC subunit B [Shewanella halifaxensis HAW-EB4] gi|167353951|gb|ABZ76564.1| excinuclease ABC, B subunit [Shewanella halifaxensis HAW-EB4] Length = 664 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 289/589 (49%), Positives = 405/589 (68%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y PSGDQP AIA+L+ GI S Q L GVTGSGKTFT+A +I ++RP I++A Sbjct: 11 FILHSSYLPSGDQPEAIARLIDGIESGASHQTLKGVTGSGKTFTVANIIHRLKRPTIILA 70 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSE ++FFP NAVE+FVSYYDYYQPE Y+P +D +I K+S+IN ++R+R Sbjct: 71 HNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSAINAHLERLRL 130 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T++L+ER D IVV+SVS +YG+G ++Y + V+L +G ++E +EL+ L + QY R Sbjct: 131 STTKALIERRDVIVVASVSSVYGLGDPDAYRSLQVKLSLGQAIETEELIERLERLQYGRC 190 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + I R TF V +++IFP+ E A + + + ++ ++G+K+ +V+ + Sbjct: 191 NRTIKRATFLVRDGAVDIFPADSEHKALTLELDDGHLNKLYWIDAVSGEKLADVDEYYVS 250 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y ++ A + I +++++++ L E RL EA RL +R DLE+L G C Sbjct: 251 PKTLYSVSVEQVDLACEQIMKDMELQVASLSAENRLTEAARLYERTVSDLELLRLQGYCP 310 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+ YL R+P PP TLF+Y+P+D LLF+DESHV +PQIS MY+ D RK TL ++ Sbjct: 311 GIENYASYLNQRDPKLPPTTLFDYLPKDGLLFIDESHVMVPQISAMYKSDQSRKNTLIDF 370 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +NRPL F+E+ ++P TI VSATPG +EL + I +QIIRPTGL+DP +E Sbjct: 371 GFRLPSARNNRPLSFDEFESIKPQTIFVSATPGRYELSKSNSHIFKQIIRPTGLLDPEIE 430 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 IR + ++D+ EI L + R L+T LTK+ AE L +++ R I+V Y+HS+VKT + Sbjct: 431 IRPSENNLKDLVKEIELRVARNERTLVTTLTKKSAEALNDFIAARGIKVSYLHSDVKTND 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+EII LR G+ DVL+GINLLREGLDIPE LVA+LDAD GFLRS+ +LIQ IGRAAR Sbjct: 491 RVEIINALRAGELDVLIGINLLREGLDIPEASLVAVLDADHAGFLRSEQALIQIIGRAAR 550 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 N N K ILYAD +T ++Q AIDE++ RR Q+ +N + I P S K K+ Sbjct: 551 NENGKAILYADKMTFAMQKAIDESSERRGHQMLYNMANGIVPSSSKRKL 599 >gi|71893996|ref|YP_279442.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae J] Length = 659 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 292/660 (44%), Positives = 431/660 (65%), Gaps = 7/660 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K+ F++ +Y PSGDQP AI L+ GI S +K Q+LLGVTGSGKTFTMA VI +P Sbjct: 3 KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 62 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P D Y+EK S N + Sbjct: 63 VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 122 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + MR SA +L+ RND IV++SV+ IYG + + Y + L++ ++ EL L + Sbjct: 123 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 182 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +Y+ I G F + GD +EIFP+ + RV FGN IE I+ +P++ I++ Sbjct: 183 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 242 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + Y + +N A++ IK EL +L EK +L+E QRL+ R+ D++ L Sbjct: 243 SFTVYPATAYSVKKNIINRAIETIKIELGEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 302 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENY+R++ GR GE P +L +Y+P+D L+F+DESH+ I QI GMY GD RK Sbjct: 303 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 362 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL +YG+RLPS +DNRPL+ E+ + I VSATP S+E+++ G IV QIIRPTGL+ Sbjct: 363 TLVDYGYRLPSALDNRPLKLSEFEKYQQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 422 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614 DP + I S + Q+E ++ + ++ R L+ TKR+AE++++YL E ++ V Y+HS Sbjct: 423 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 482 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ T ER EII LR G +D +VGINLLREG+DIPE L+ +L+A FLRS++SLIQ Sbjct: 483 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 542 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN + KVIL+ DT+T++I+ + + +R+ Q+E+N+K+ I P+++K+ I + I+ Sbjct: 543 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 602 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + IS ++ KK+ + ++K L K+M +AAD FEEA +IRD I +K Sbjct: 603 P------NSLKISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 656 >gi|144227741|gb|AAZ44731.2| excinuclease ABC subunit B [Mycoplasma hyopneumoniae J] Length = 661 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 292/660 (44%), Positives = 431/660 (65%), Gaps = 7/660 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K+ F++ +Y PSGDQP AI L+ GI S +K Q+LLGVTGSGKTFTMA VI +P Sbjct: 5 KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P D Y+EK S N + Sbjct: 65 VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + MR SA +L+ RND IV++SV+ IYG + + Y + L++ ++ EL L + Sbjct: 125 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 184 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +Y+ I G F + GD +EIFP+ + RV FGN IE I+ +P++ I++ Sbjct: 185 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 244 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + Y + +N A++ IK EL +L EK +L+E QRL+ R+ D++ L Sbjct: 245 SFTVYPATAYSVKKNIINRAIETIKIELGEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 304 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENY+R++ GR GE P +L +Y+P+D L+F+DESH+ I QI GMY GD RK Sbjct: 305 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 364 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL +YG+RLPS +DNRPL+ E+ + I VSATP S+E+++ G IV QIIRPTGL+ Sbjct: 365 TLVDYGYRLPSALDNRPLKLSEFEKYQQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 424 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614 DP + I S + Q+E ++ + ++ R L+ TKR+AE++++YL E ++ V Y+HS Sbjct: 425 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 484 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ T ER EII LR G +D +VGINLLREG+DIPE L+ +L+A FLRS++SLIQ Sbjct: 485 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 544 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN + KVIL+ DT+T++I+ + + +R+ Q+E+N+K+ I P+++K+ I + I+ Sbjct: 545 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 604 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + IS ++ KK+ + ++K L K+M +AAD FEEA +IRD I +K Sbjct: 605 P------NSLKISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 658 >gi|54020288|ref|YP_116177.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 232] gi|53987461|gb|AAV27662.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 232] Length = 679 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 292/660 (44%), Positives = 432/660 (65%), Gaps = 7/660 (1%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 K+ F++ +Y PSGDQP AI L+ GI S +K Q+LLGVTGSGKTFTMA VI +P Sbjct: 23 KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 82 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P D Y+EK S N + Sbjct: 83 VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 142 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + MR SA +L+ RND IV++SV+ IYG + + Y + L++ ++ EL L + Sbjct: 143 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 202 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 +Y+ I G F + GD +EIFP+ + RV FGN IE I+ +P++ I++ Sbjct: 203 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIETINIIHPVSKSIIKSYN 262 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + Y + +N A++ IK EL +L EK +L+E QRL+ R+ D++ L Sbjct: 263 SFTVYPATAYSVKKNIINRAIETIKIELAEQLQFFEKNNKLVEKQRLKDRVNNDVDSLSE 322 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENY+R++ GR GE P +L +Y+P+D L+F+DESH+ I QI GMY GD RK Sbjct: 323 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 382 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL +YG+RLPS +DNRPL+ E+ + I VSATP S+E+++ G IV QIIRPTGL+ Sbjct: 383 TLVDYGYRLPSALDNRPLKLSEFEEYQHAKIYVSATPASYEIDKANGEIVSQIIRPTGLI 442 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614 DP + I S + Q+E ++ + ++ R L+ TKR+AE++++YL E ++ V Y+HS Sbjct: 443 DPEIVIESTKNQMEKIFQYLLKQKKKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 502 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 E+ T ER EII LR G +D +VGINLLREG+DIPE L+ +L+A FLRS++SLIQ Sbjct: 503 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 562 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 IGRAARN + KVIL+ DT+T++I+ + + +R+ Q+E+N+K+ I P+++K+ I + I+ Sbjct: 563 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 622 Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 P + IS ++ +KK+ + ++K L K+M +AAD FEEA +IRD I +K Sbjct: 623 P------NSLKISKVLREKQKNKKEVENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 676 >gi|294637393|ref|ZP_06715685.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685] gi|291089428|gb|EFE21989.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685] Length = 484 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 279/480 (58%), Positives = 352/480 (73%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L G+ Q LLGVTGSGKTFT+A VI + RP +VMA Sbjct: 5 FKLHSAFQPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLSELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ ED A RV +F ++E +S F PLTGQ +R V+ +Y Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEAEDQALRVELFDEEVERLSLFDPLTGQLLRTVQRFTVY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ I+ EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIRGELAQRRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRFEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELERSGGEVIDQVVRPTGLLDPQIE 424 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R TQV+D+ EIN A G R+L+T LTKRMAEDLTEYL E +RVRY+HS++ T+E Sbjct: 425 VRPVATQVDDLLSEINQRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484 >gi|260221137|emb|CBA29402.1| UvrABC system protein B [Curvibacter putative symbiont of Hydra magnipapillata] Length = 537 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 285/527 (54%), Positives = 375/527 (71%), Gaps = 7/527 (1%) Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 +S IYGIG ESY QM++ L++GD + Q+++++ LV+ QY+R D+ RG FRV GD+I+ Sbjct: 1 MSAIYGIGKPESYHQMVMTLRVGDKLGQRDMIAQLVRMQYQRNDMDFSRGAFRVRGDTID 60 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP+ ++A RV +F ++IE + F PLTG+ + + +Y +SHYVTPR + A++ Sbjct: 61 IFPAEHSEMAIRVELFDDEIESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPRDQVLAAVE 120 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IK EL RL EL G+L+EAQRLEQR +DLEML G C+ IENYSR+L+G PGEP Sbjct: 121 TIKTELSDRLKELVSAGKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYSRHLSGSAPGEP 180 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 P TL +Y+P+D+L+F+DESHV I Q GMY GD RK TL EYGFRLPS +DNRPL+FEE Sbjct: 181 PSTLTDYLPKDALMFLDESHVLIGQFGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEE 240 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 + + VSATP WE E G +VEQ++RPTGLVDP VE+R A TQV+DV EI + Sbjct: 241 FETKMRQVVFVSATPAQWENEHA-GQVVEQVVRPTGLVDPEVEVRPAGTQVDDVLQEIRI 299 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 + R+L+T LTKRMAE LT+YL + ++VRY+HS+V T+ER+EI+RDLRLG FDVLV Sbjct: 300 RVDKNERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDVDTVERVEILRDLRLGTFDVLV 359 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 GINLLREGLDIPE LVAILDADKEGFLRS+ SLIQTIGRAARN+ K ILYAD IT S+ Sbjct: 360 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITDSM 419 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA--TTNISIDAQQLS- 754 + AI ET RRR+KQ+ HN + I P+++ +K+ ++ID + E A + DAQQ + Sbjct: 420 ERAIGETERRRKKQIAHNLERGITPKAIVKKVRDLIDGVYSEKAGKEAERLERDAQQRAQ 479 Query: 755 ---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 +S+K +K L K M A NL FE+AAR+RD++ LK + Sbjct: 480 VEDMSEKDISREIKRLEKLMMEHARNLEFEKAARVRDQLTILKEQAF 526 >gi|134095237|ref|YP_001100312.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans] Length = 609 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/545 (50%), Positives = 380/545 (69%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 MA VI ++RP +++APNK L AQLY E K+FFP NAVEYFVSYYDY+QPE Y+P TD + Sbjct: 1 MANVIHRLKRPTLILAPNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRF 60 Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304 I K+S+IN+ ++R+R S T+SL+ER D IVV+SVS IYG+G E+Y + + L G + Sbjct: 61 IPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLN 120 Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 Q+EL+ L QY R + + R TFR GD I+IFP+ E A RV + + + + Sbjct: 121 QRELIRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLD 180 Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424 P+TG+ + ++ + + + P +++A K I +++ R+ EL + RL+EA RL + Sbjct: 181 PVTGKTLGAIDHYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYE 240 Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484 RIT+D+EM+ G C +ENYS Y + R+P PP TL +Y+P+D LLFVDESHV +PQIS Sbjct: 241 RITHDVEMMREVGYCSGMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQIS 300 Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544 MYRGD RK TL +YGFRLPS +NRPL F E+ ++P TI VSATPG +EL + + Sbjct: 301 AMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRV 360 Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 VEQ+IRPTGL+DP VE+R A ++D+ EI+ ++ R+L+T LTK AE+LT++L + Sbjct: 361 VEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTD 420 Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 IR RYMHS++K +R+EII LR G+FDVL+GI+LLREGLDIPE LVAILDAD+ GF Sbjct: 421 NGIRARYMHSDIKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGF 480 Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724 LRS +LIQ IGR ARN N K ILYAD +T +++ AIDET RRR+ Q+ N+++ I+P S Sbjct: 481 LRSAHALIQMIGRVARNENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPAS 540 Query: 725 VKEKI 729 K+ Sbjct: 541 SVRKL 545 >gi|209554160|ref|YP_002284542.1| excinuclease ABC subunit B [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541661|gb|ACI59890.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 666 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 311/664 (46%), Positives = 424/664 (63%), Gaps = 13/664 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D ++ + Y P+GDQ AI +++ I+ Q+LLG TG+GKTF++A VI Q Sbjct: 3 DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LAAQL++E K FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S N +I+ Sbjct: 63 LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 MR S SL RND IVV+SV+CIY S +++ + L +G+S++ +++ LV+ Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R+D ++ GTFR+ GD IEI P + + RVSMFGN++E I P+T I + Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + + S Y+ L+ A+ IK+EL R+ K +L+EAQR+EQR D+E + Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY R+L R P + P T+F++ +D LL VDESH+++PQ+ GMY D R Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPL ++E+N I VSATP E+ IV QI+RPTG Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP VEIR Q++D+ +E+ L R +TV+T RMAEDLT YL ++ Y+H Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +E+KTLER II LR G +D +VGINLLREGLD+PE V I DADK GF RS SLIQ Sbjct: 483 NELKTLERSSIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P++ +I Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKT-------II 595 Query: 734 DPILLEDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 PI ED + + +A+ + SK + +K L+K+M AA +E AA+ RD I Sbjct: 596 KPI-HEDLSGHDYKQNAELYAAKASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIV 654 Query: 792 RLKS 795 L++ Sbjct: 655 ELEA 658 >gi|171920764|ref|ZP_02931962.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188524112|ref|ZP_03004189.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867738|ref|ZP_03079739.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273465|ref|ZP_03206001.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|171903515|gb|EDT49804.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195659906|gb|EDX53286.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660593|gb|EDX53849.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249985|gb|EDY74765.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 666 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 311/664 (46%), Positives = 424/664 (63%), Gaps = 13/664 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D ++ + Y P+GDQ AI +++ I+ Q+LLG TG+GKTF++A VI Q Sbjct: 3 DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LAAQL++E K FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S N +I+ Sbjct: 63 LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 MR S SL RND IVV+SV+CIY S +++ + L +G+S++ +++ LV+ Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R+D ++ GTFR+ GD IEI P + + RVSMFGN++E I P+T I + Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + + S Y+ L+ A+ IK+EL R+ K +L+EAQR+EQR D+E + Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY R+L R P + P T+F++ +D LL VDESH+++PQ+ GMY D R Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPL ++E+N I VSATP E+ IV QI+RPTG Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP VEIR Q++D+ +E+ L R +TV+T RMAEDLT YL ++ Y+H Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +E+KTLER II LR G +D +VGINLLREGLD+PE V I DADK GF RS SLIQ Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P++ +I Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKT-------II 595 Query: 734 DPILLEDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 PI ED + + +A+ + SK + +K L+K+M AA +E AA+ RD I Sbjct: 596 KPI-HEDLSGHDYKQNAELYAAKASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIV 654 Query: 792 RLKS 795 L++ Sbjct: 655 ELEA 658 >gi|225550497|ref|ZP_03771446.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379651|gb|EEH02013.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 666 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 311/664 (46%), Positives = 424/664 (63%), Gaps = 13/664 (1%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D ++ + Y P+GDQ AI +++ I+ Q+LLG TG+GKTF++A VI Q Sbjct: 3 DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LAAQL++E K FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S N +I+ Sbjct: 63 LVLAHNKTLAAQLFAELKEIFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 MR S SL RND IVV+SV+CIY S +++ + L +G+S++ +++ LV+ Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R+D ++ GTFR+ GD IEI P + + RVSMFGN++E I P+T I + Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + + S Y+ L+ A+ IK+EL R+ K +L+EAQR+EQR D+E + Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY R+L R P + P T+F++ +D LL VDESH+++PQ+ GMY D R Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPL ++E+N I VSATP E+ IV QI+RPTG Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP VEIR Q++D+ +E+ L R +TV+T RMAEDLT YL ++ Y+H Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +E+KTLER II LR G +D +VGINLLREGLD+PE V I DADK GF RS SLIQ Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P++ +I Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKT-------II 595 Query: 734 DPILLEDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791 PI ED + + +A+ + SK + +K L+K+M AA +E AA+ RD I Sbjct: 596 KPI-HEDLSGHDYKQNAELYAAKASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIV 654 Query: 792 RLKS 795 L++ Sbjct: 655 ELEA 658 >gi|185178702|ref|ZP_02964521.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188518557|ref|ZP_03004017.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225551332|ref|ZP_03772278.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209295|gb|EDU06338.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188997878|gb|EDU66975.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225379147|gb|EEH01512.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 666 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 290/592 (48%), Positives = 390/592 (65%), Gaps = 3/592 (0%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D ++ + Y P+GDQ AI +++ I+ Q+LLG TG+GKTF++A VI Q Sbjct: 3 DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LAAQL++E K FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S N +I+ Sbjct: 63 LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 MR S SL RND IVV+SV+CIY S +++ + L +G+S++ +++ LV+ Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R+D ++ GTFR+ GD IEI P + + RVSMFGN++E I P+T I + Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + + S Y+ L+ A+ IK+EL R+ K +L+EAQR+EQR D+E + Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELNERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY R+L R P + P T+F++ +D LL VDESH+++PQ+ GMY D R Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPL ++E+N I VSATP E+ IV QI+RPTG Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP VEIR Q++D+ +E+ L R +TV+T RMAEDLT YL ++ Y+H Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +E+KTLER II LR G +D +VGINLLREGLD+PE V I DADK GF RS SLIQ Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTI 594 >gi|289574301|ref|ZP_06454528.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis K85] gi|289538732|gb|EFD43310.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis K85] Length = 510 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 282/505 (55%), Positives = 369/505 (73%), Gaps = 1/505 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREG 645 R+E++R LRLG +DVLVGINLLRE Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREA 510 >gi|322378800|ref|ZP_08053229.1| excinuclease ABC subunit B [Helicobacter suis HS1] gi|322380649|ref|ZP_08054801.1| excinuclease ABC subunit B [Helicobacter suis HS5] gi|321146971|gb|EFX41719.1| excinuclease ABC subunit B [Helicobacter suis HS5] gi|321148830|gb|EFX43301.1| excinuclease ABC subunit B [Helicobacter suis HS1] Length = 627 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/630 (47%), Positives = 421/630 (66%), Gaps = 10/630 (1%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K Q L+GVTGSGKTF+MA +I +Q P +VM+ NK L AQLYSEFK+FFP N VEYF+S+ Sbjct: 4 KYQTLVGVTGSGKTFSMAYLISKLQMPTLVMSHNKTLCAQLYSEFKSFFPKNHVEYFISH 63 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 +DYYQPE+Y+PR D +IEK+SSINE ++R+R SA SLL +D +VV+SVS YG+G+ Sbjct: 64 FDYYQPESYIPRRDLFIEKDSSINEDLERLRLSAITSLLGYDDVVVVASVSANYGLGNPA 123 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 Y M+ ++++G + + L LV+ Y+RQDI + RG FRV G+S++IFP++ + Sbjct: 124 EYLSMLEKIEVGQQISYTQFLLKLVEMGYERQDI-LERGYFRVVGESVDIFPAYNDSNFI 182 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV FG++++ I+ L I+++++ +YA S ++ L A+ I+ EL RL Sbjct: 183 RVEFFGDEVDRITYMDALENTPIQSLDSYILYAASAFIVSPQCLKKALSSIETELAQRLE 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 ++E +LLE +RL+ R +DLEM+ TTG C+ IENYSR+ TG+ GE P TL +Y + Sbjct: 243 FFKQEQKLLEYERLKTRTEFDLEMMGTTGICKGIENYSRHFTGKQAGETPYTLMDYFAQK 302 Query: 469 S---LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525 + L+ VDESHV++PQ GMY GD RK L E+GFRLPS +DNRPL++EE+ P Sbjct: 303 NCPYLVIVDESHVSLPQFKGMYAGDLSRKQVLVEHGFRLPSALDNRPLKYEEFIQKAPHF 362 Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585 + VSATP ELE + QIIRPTGL+DP +R + QV D+ I + R+ Sbjct: 363 LFVSATPNPLELELSGNHVASQIIRPTGLLDPEYCLRPTQNQVNDLLKTIQSVVAKKERV 422 Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+T LTKRMAE+L ++ E ++V+Y+HS+ + R IR LRLG+ DVL+GINLLREG Sbjct: 423 LVTTLTKRMAEELCKHYAECGLKVQYLHSDTDVIARNHSIRALRLGEIDVLIGINLLREG 482 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705 LD+PE LVAILDADKEGFLRS T+LIQT+GRAAR+V+ +VI YAD IT S+Q A+D T Sbjct: 483 LDLPEVSLVAILDADKEGFLRSSTALIQTMGRAARHVHGRVIFYADKITPSMQEAMDITD 542 Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765 RR KQ+ N++H + P+ V + + I L + N++ + K + + +K Sbjct: 543 SRRAKQMAFNQEHGLTPRGVNRPLEAELKEIELSKPSKKNLN------KMPKSEKERLIK 596 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +LR QM A L+FE AA++RDEI R++ Sbjct: 597 TLRAQMQERARVLDFENAAKLRDEIARIRG 626 >gi|50364873|ref|YP_053298.1| excinuclease ABC subunit B [Mesoplasma florum L1] gi|50363429|gb|AAT75414.1| repair endonuclease subunit B [Mesoplasma florum L1] Length = 615 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 297/613 (48%), Positives = 395/613 (64%), Gaps = 6/613 (0%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 MA +I+ + +P +V+A NK LA QLY E FFP+N VEYFVS +D++QPEAY P TD Y Sbjct: 1 MANIIKEINKPTLVLAHNKTLAMQLYYELMEFFPNNRVEYFVSNFDFFQPEAYKPATDLY 60 Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304 I K++ IN ++D +R SA +L ND IVV+SV+ IY Y+ +LK G Sbjct: 61 INKDARINMELDMLRMSAMNALSISNDTIVVASVAAIYPSQDPVQYASSFFELKTGQKFS 120 Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 ++ELL+ LVK Y R DI GTF V GD I++ P +R S+F + IE I Sbjct: 121 KRELLTYLVKTGYTRNDIENSPGTFSVKGDVIKVVPGWSLSAMYRFSLFDDHIEMIDMLN 180 Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424 +TG I + T+ IY YVTP L A I+EEL +R+ EL++EG+LLEA+RL+Q Sbjct: 181 VVTGALIERISTVTIYPAQAYVTPEDKLKQACLNIREELAVRVKELKEEGKLLEAERLDQ 240 Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484 R YDLE LE G C IENYS +L R PGE P TL +Y D L +DESH+ + Q+ Sbjct: 241 RTRYDLESLEEFGFCSGIENYSAHLDFRAPGETPYTLLDYFKGDFLTIIDESHIMVSQVR 300 Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544 GMY D RK TL EYGFRLPS +DNRPL FEE+ I SATPG +ELE + Sbjct: 301 GMYNTDRSRKQTLVEYGFRLPSALDNRPLNFEEFTGKLKQVIYTSATPGDYELELVNHEV 360 Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 VEQIIRPTGL+DP +E++ Q+ED+ ++I+ + ++ +T LT RM+EDLT YL E Sbjct: 361 VEQIIRPTGLLDPVIEVKKTEGQIEDIIEQIHERKKVNEKVFITTLTIRMSEDLTSYLQE 420 Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 RNI+V Y+HSE+KTLER +I+ DLR G +D +VG+NLLREGLD+PE LV +LDADK+GF Sbjct: 421 RNIKVAYLHSELKTLERSDILNDLRRGVYDAVVGVNLLREGLDLPEVSLVCVLDADKQGF 480 Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724 LR+ SLIQT GRAARN N KVI YADTI+ S+Q A+DET RRRE Q +NK+HNI P + Sbjct: 481 LRNTKSLIQTAGRAARNANGKVIFYADTISTSMQEAMDETNRRREIQQAYNKEHNITPVT 540 Query: 725 VKEKIMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 + +KI + L +A + + K+ + + +R +M AA +L+FE+ Sbjct: 541 ITKKINQST----LSEATKKELEKIKKQKTAKGKKEAYQKTIDDIRAEMIQAAKDLDFEK 596 Query: 783 AARIRDEIKRLKS 795 AA +RD I L++ Sbjct: 597 AAVLRDTIIELEA 609 >gi|188024297|ref|ZP_02996985.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018971|gb|EDU57011.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 666 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/592 (48%), Positives = 390/592 (65%), Gaps = 3/592 (0%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D ++ + Y P+GDQ AI +++ I+ Q+LLG TG+GKTF++A VI Q Sbjct: 3 DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LAAQL++E K FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S N +I+ Sbjct: 63 LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 MR S SL RND IVV+SV+CIY S +++ + L +G+S++ +++ LV+ Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R+D ++ GTFR+ GD IEI P + + RVSMFGN++E I P+T I + Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + + S Y+ L+ A+ IK+EL R+ K +L+EAQR+EQR D+E + Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELNERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY R+L R P + P T+F++ +D LL VDESH+++PQ+ GMY D R Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPL ++E+N I VSATP E+ IV QI+RPTG Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP VEIR Q++D+ +E+ L R +TV+T RMAEDLT +L ++ Y+H Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNHLNNTKVKAAYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +E+KTLER II LR G +D +VGINLLREGLD+PE V I DADK GF RS SLIQ Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTI 594 >gi|261495003|ref|ZP_05991471.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309319|gb|EEY10554.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str. OVINE] Length = 531 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 282/527 (53%), Positives = 378/527 (71%), Gaps = 7/527 (1%) Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 ++SVS IYG+G V++Y QM++ L++G + Q+E+LS L + QY R D R TFRV GD Sbjct: 1 MASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGD 60 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 I+I+P+ ++VA RV +F ++IE +S F PLTG+ + V IY +HYVTPR + Sbjct: 61 VIDIYPAESDEVALRVELFDDEIENLSLFDPLTGRSLGKVPRYTIYPKTHYVTPRERILE 120 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 A++ IK EL R KE +LLE QR+ QR +D+EM+ G C IENYSRYL+GR Sbjct: 121 AIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKE 180 Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514 GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD RK TL +YGFRLPS +DNRPLR Sbjct: 181 GEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLR 240 Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574 FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E+R TQV+D+ E Sbjct: 241 FEEFERLSPQTIYVSATPGAYELEKNPD-VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 299 Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 I+ R+L+T LTK+MAEDLT+YL E +RVRY+HS++ T+ER+EII DLR+G FD Sbjct: 300 IHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFD 359 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694 VLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILY D IT Sbjct: 360 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRIT 419 Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------PILLEDAATTNISI 748 S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D P + A + Sbjct: 420 NSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSVKPKRGKQAVKKAENS 479 Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 S+K+ + LK+L +QM A +L FE+AA +RD++++LK+ Sbjct: 480 ATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQQLKA 526 >gi|13357677|ref|NP_077951.1| excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762298|ref|YP_001752203.1| excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920171|ref|ZP_02931560.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508818|ref|ZP_02958272.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186702003|ref|ZP_02971622.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|21542297|sp|Q9PR24|UVRB_UREPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|238688162|sp|B1AIA9|UVRB_UREP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|11278008|pir||C82932 excinuclease ABC subunit B UU120 [imported] - Ureaplasma urealyticum gi|6899077|gb|AAF30526.1|AE002112_7 excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827875|gb|ACA33137.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902546|gb|EDT48835.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675781|gb|EDT87686.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700781|gb|EDU19063.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 666 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 287/586 (48%), Positives = 384/586 (65%), Gaps = 3/586 (0%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D F++ +DY P+GDQ AI +++ I+ + Q+LLG TG+GKTF++A VI Q Sbjct: 3 DFKKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKT 62 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A NK LAAQL++E K FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S N +I+ Sbjct: 63 LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 MR S SL RND IVV+SV+CIY S +++ + L +G+ +E +++ LV+ Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLG 182 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+R+D ++ GTFR+ GD IEI + + R+SMFGN++E I P+T I + Sbjct: 183 YERKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQR 242 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + + S Y+ L A++ IK EL R+ K +L+EAQR+EQR DLE + Sbjct: 243 FILRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEF 302 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY R+L R P + P T+F++ +D LL VDESH+++PQ+ GM+ D R Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSR 362 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K TL EYGFRLPS +DNRPL ++E+N TI VSATP E+ IV QI+RPTG Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTG 422 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP +EIR Q++D+ +E+ L + R +TV+T RMAEDLT YL I+ Y+H Sbjct: 423 LLDPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLH 482 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +E+KTLER II LR G +D +VGINLLREGLD+PE V I DADK GF RS SLIQ Sbjct: 483 NELKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQ 542 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 IGRAARN + KVI+YAD IT+++Q AI+ET RRRE QL N KHN Sbjct: 543 IIGRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHN 588 >gi|71894082|ref|YP_278190.1| excinuclease ABC subunit B [Mycoplasma synoviae 53] gi|71850870|gb|AAZ43479.1| excinuclease ABC subunit B [Mycoplasma synoviae 53] Length = 668 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 287/664 (43%), Positives = 422/664 (63%), Gaps = 3/664 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P GDQP AI +L++GI + K Q+LLGVTGSGKTFT+A VI+ RPAI+++ Sbjct: 4 FKLNSNFTPQGDQPKAINELVQGIKNNRKDQVLLGVTGSGKTFTIANVIKEFDRPAIILS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE K FFP NAVEYF+SY+DYY+PEAY TDTYIEK+S+ N+QI+ +R Sbjct: 64 HNKTLASQLYSELKAFFPENAVEYFISYFDYYRPEAYKANTDTYIEKDSATNQQIEILRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA SLL R D IVV+SVS IYG + E Y++ + + K+ + L K +Y+R Sbjct: 124 SAYNSLLTRKDVIVVASVSAIYGALNPEVYNKSFYNFYLNQKISVKDFIIKLTKNKYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ ++ G F V GD + I P+ E RVS ++IEEI+ +PL I+ V + Sbjct: 184 DLDVVPGRFAVKGDLVFIAPADSETKMIRVSFSYDEIEEIAFVHPLEKTTIKKVSHYTLS 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y T +T + I+EELK R+ + ++LEA R+ QR D++ ++ G C+ Sbjct: 244 PGDAYATDNSIYSTVIPQIQEELKERVKYYKDNNQILEATRINQRTNNDIDDMKEFGHCK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYS YL GR G+ P T+ +Y PE+SL+F+DESH+++PQI M+ GD RK L +Y Sbjct: 304 GIENYSMYLDGRTFGQRPYTILDYFPENSLMFIDESHMSLPQIRAMHAGDRSRKNELVKY 363 Query: 501 GFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 FRLPS ++NRPL F+E+ N I +SATP ++E+ + G + +RPTGL+DP + Sbjct: 364 AFRLPSALENRPLTFDEFENSFSFNKIYISATPEAYEINKTAGAVTTLYVRPTGLIDPEI 423 Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 I Q+E +Y+ I + G + L+ +TKR+AE+++ Y +R I+ Y+HS+ +T Sbjct: 424 FIYPKENQIERIYNIIMEQRKTGEKTLVLTVTKRLAEEISNYFIDRKIKAAYIHSDHETF 483 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 R EI+R LR+G ++V++GINLLREG+DIPE V ILDAD GFLR+ SLIQ +GRAA Sbjct: 484 VRNEILRKLRMGTYEVVIGINLLREGIDIPEVSKVIILDADSNGFLRNTKSLIQIVGRAA 543 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 RN N + IL+ADTIT +I+ +++ +R+ Q+E+N+K+ I P+++ + I I E Sbjct: 544 RNANGQAILFADTITSAIKEMMEDNKIKRKIQMEYNQKYRIVPKTIIKPIRGAIYNENYE 603 Query: 740 DAATTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 +A + + KK + ++ L QM AA ++EEA R+RD I +K S Sbjct: 604 NAMEILLKKSQKSKFSKNEKKALNSLIEDLEIQMKKAAKEYDYEEAIRLRDMIHEIKQSQ 663 Query: 798 YFQG 801 +G Sbjct: 664 SNKG 667 >gi|99034302|ref|ZP_01314346.1| hypothetical protein Wendoof_01000855 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 496 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 275/510 (53%), Positives = 359/510 (70%), Gaps = 17/510 (3%) Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 VSCIYG+GS ESY MI+ L +G+ + + LS+L QYKR D RG FRV GD ++ Sbjct: 1 VSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIVD 60 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFPSH E+ AWR+S+FG++IEEISE +TG + V I I+ NS+Y+TPR L A++ Sbjct: 61 IFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIE 120 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 +K+EL RL + +++EA+RLEQR +D+EM+ TTG C+ IENYSRYL G G+P Sbjct: 121 LVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDP 180 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 PPTLFEY+P+D +LFVDESHVT+PQ+ MY G+ RK L +YGFRLPS DNRPL+FEE Sbjct: 181 PPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEE 240 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577 W +RP T+ +SATPG +EL + + +EQ+IRPTGL DP ++ +Q++DV E + Sbjct: 241 WEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQV 300 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 +G +L+T LTK+MAE+L EY+ E N+RV Y+HS++ LERIEII LR + DVLV Sbjct: 301 TIGKGFCVLITTLTKKMAENLAEYMSEMNMRVSYLHSDIAALERIEIIYKLRSKEIDVLV 360 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 G+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN +VILYAD IT S+ Sbjct: 361 GVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSL 420 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757 A+ ET RRR+KQ EHN +NI P++ +I P IS Q+ ++++ Sbjct: 421 DRALRETERRRKKQEEHNILYNIVPKT-------IIKP----------ISNTLQERAIAE 463 Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 K + LRKQM A+NL FEEAARI+ Sbjct: 464 PKVNTNKDDLRKQMIEHAENLEFEEAARIK 493 >gi|313678563|ref|YP_004056303.1| excinuclease ABC subunit B [Mycoplasma bovis PG45] gi|312950773|gb|ADR25368.1| excinuclease ABC, B subunit [Mycoplasma bovis PG45] Length = 669 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 290/659 (44%), Positives = 416/659 (63%), Gaps = 8/659 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L++GI + K Q+L GVTGSGKTFT+A VI RP +V++ Sbjct: 4 FKLHSTYAPAGDQPKAINELVEGIKNNVKEQVLQGVTGSGKTFTIANVINKFNRPVLVLS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE K FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S N +ID MR Sbjct: 64 HNKTLASQLYSELKGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDSMRM 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA S+L RND IVV+SVS IYG + Y + + G + + + + L+K+ Y R Sbjct: 124 SAVNSILSRNDTIVVASVSAIYGALNPYEYENNFMTIHKGQKISRNDFIRMLIKRNYFRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D G+F V GD + I P + RV FG++IE I +P+T + ++ ++ Sbjct: 184 DANSELGSFAVKGDLVLIQPIYDNSFMIRVDFFGDEIESIKTLHPITKEVFQSYNEFLLF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 Y + ++ K EL R+ EK RLLE QR+++R+ DL+ L G+C Sbjct: 244 PGDAYTVNNDIIKQTVELAKIELDERIAYFEKNNRLLETQRIKERVERDLDSLAEFGTCP 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYS YL R G+ P TL +Y + + ++F+DESH+ +PQ+ M++GD RK TL + Sbjct: 304 GIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMMPQLRAMFKGDRSRKQTLVD 363 Query: 500 YGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 YGFRLPS +DNRPL F+E+ I +SATP +EL++ GI+ +RPTGL++P Sbjct: 364 YGFRLPSALDNRPLTFDEFETSFDFQKIYISATPDEYELDKTNGIVTTLFVRPTGLLNPL 423 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E+R A+ Q+ED+YDE+ ++G R L+ TK +AE+LT + E+N ++ Y+HSE KT Sbjct: 424 IEVRPAKGQIEDIYDELQKQKERGERTLILTTTKSLAEELTRFFMEKNEKIAYIHSEHKT 483 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER EI+R LR G +D +VGINLLREG+D+PE L+ +LDAD E F RS SLIQ GRA Sbjct: 484 FERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQITGRA 543 Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738 ARN N +VI YAD+++KS+ + + + R+ Q ++N KHNI P+++ + I E I + Sbjct: 544 ARNSNGRVIFYADSVSKSMHETMLQNSEIRQIQEQYNLKHNIIPKTIIKPIPEPIHNQKM 603 Query: 739 EDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 DA + N + Q LSK + ++ LRKQM AA L++E A +RD I L+ Sbjct: 604 TDAISFYFKNSNSKNQDEKLSKDE---LIEKLRKQMEQAAKELDYERAMEMRDIIIELR 659 >gi|298525129|ref|ZP_07012538.1| excinuclease ABC [Mycobacterium tuberculosis 94_M4241A] gi|298494923|gb|EFI30217.1| excinuclease ABC [Mycobacterium tuberculosis 94_M4241A] Length = 578 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/525 (54%), Positives = 375/525 (71%), Gaps = 5/525 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 48 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 107 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 108 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 167 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 168 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 227 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 228 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 286 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 287 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 346 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 347 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 406 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 407 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 466 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 467 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 526 Query: 621 RIEIIRDL-RLGKFDVLVGINL--LREGLDIPECGLVAILDADKE 662 R+E++R L +DV G + REGLD+PE LV ILDA K+ Sbjct: 527 RVELLRQLASWVNYDV-AGRHQAGFREGLDLPEVSLVPILDATKK 570 >gi|304373424|ref|YP_003856633.1| Excinuclease ABC subunit B [Mycoplasma hyorhinis HUB-1] gi|304309615|gb|ADM22095.1| Excinuclease ABC subunit B [Mycoplasma hyorhinis HUB-1] Length = 668 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 281/656 (42%), Positives = 415/656 (63%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+ GI + + Q+LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 17 FKLVSNFQPTGDQPKAIKALVDGIKNHKDHQVLLGVTGSGKTFTMANVIAQLNRPVLILS 76 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 K LA+QLY+EFK FFP N VEYFVSY+D+Y+PEAY+P D YI+K S N ++ MR Sbjct: 77 HTKTLASQLYTEFKEFFPENRVEYFVSYFDFYRPEAYLPAKDVYIDKTSQTNWDLEAMRM 136 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L R D IVVSSV+ IYG + + Y Q + L++ ++ + LVK QY R Sbjct: 137 SALNALTLRRDTIVVSSVAAIYGSYNPKEYKQHFLNLELNQELKPSDFAIELVKIQYSRN 196 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G+F GD I P+ + ++ FGN IE+IS+ +P+ + I+ + I+ Sbjct: 197 QVDTVPGSFSAKGDVFIISPAWTDKYLIKIEFFGNIIEKISKIHPVDKKIIQTFTSYTIF 256 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y T+ TA+K I EL +L EKEG+LLE QRL +R+ D++ L G C+ Sbjct: 257 PASAYTLSPNTIQTAIKTILTELDFQLNYFEKEGKLLEKQRLNERVLNDVDSLNNFGFCK 316 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R++ R GE P +L +Y+PED+L+F+DESH I Q++ MY+GD RK +L Y Sbjct: 317 GIENYARHIDQREAGEQPYSLLDYLPEDALIFIDESHEMITQLNRMYKGDRSRKLSLVNY 376 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + I VSATP ++E+++ G ++ Q+IRPTGL+DP +E Sbjct: 377 GFRLPSALDNRPLKFEEFEKFKQPKIYVSATPSNYEIDKADGEVIHQLIRPTGLLDPVIE 436 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +Q++++YD + + R ++ +KR AE+L+ YL + +V Y+HS T E Sbjct: 437 VRPTHSQIDEIYDLLQEQKSKNERTIILTTSKRSAEELSRYLESKKQKVYYIHSTFTTFE 496 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +I+ LR G +D ++GINLLREG+D+PE LV +L+AD+E F RSKTSL Q +GRAAR Sbjct: 497 RDDILIKLRKGIYDAIIGINLLREGIDLPEVSLVIVLNADEESFFRSKTSLTQFVGRAAR 556 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 + + K I +AD I+KS+ I + R R Q ++N +NI P+ V + I++ I E Sbjct: 557 SNHGKAIFFADKISKSMAATIADNQRNRAIQHQYNLDNNITPKPVIKPIIQQIR----EK 612 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 IS+ + +K + + SLRKQM AA N+E A ++ I L+ S Sbjct: 613 DQNKIISLIHNKNKETKAEKDKLIASLRKQMKDAAREENYELAIELQQVIAELEHS 668 >gi|308049035|ref|YP_003912601.1| excinuclease ABC, B subunit [Ferrimonas balearica DSM 9799] gi|307631225|gb|ADN75527.1| excinuclease ABC, B subunit [Ferrimonas balearica DSM 9799] Length = 662 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 274/591 (46%), Positives = 387/591 (65%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AIA+L++G + Q+L GVTGSGKT+TMA +I ++RP +++A Sbjct: 6 FTLHSRFPPSGDQPQAIARLVQGFEAGHSHQILKGVTGSGKTYTMASLIARLKRPTLILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY E FFP NAV +FVSYYDYYQPE Y+P +DT+I K++S+N +++R+R Sbjct: 66 HNKTLAAQLYEEMLGFFPDNAVHFFVSYYDYYQPEVYLPASDTFIRKDASVNARLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T++L+ER D +V++SVS IYG+G Y M + L+ +E + L S L + QY+R Sbjct: 126 ATTKALIERPDVVVIASVSSIYGLGDPNQYRAMQIHLEPQQKLEPESLFSQLARLQYQRS 185 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D I T+R I+IFP+ + A R+ + + + + P + + + ++ Sbjct: 186 DKKISPATYRADARGIDIFPADSDHDAIRLQIENDTLVSLQRLEPASDTLLGPLSEYRVS 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y P+ + A+ I+ EL RL L + + EA RLE+R+ DLE + G C Sbjct: 246 PKTLYAVPQDRIQQALPAIESELIDRLNALRAQHQFTEAGRLEERVRLDLEDMAQQGYCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +ENY+RYL R+P PP TL +Y+P++ +L +DESHV +PQI M RGD RK TL +Y Sbjct: 306 GMENYTRYLNERDPNRPPTTLLDYLPKNGVLMIDESHVMVPQIGAMQRGDAARKQTLIDY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL F E+ ++P T+ VSATPG +EL + VEQIIRPTGL+DP VE Sbjct: 366 GFRLPSSLDNRPLTFAEFESIKPQTLFVSATPGEYELRRSVTEPVEQIIRPTGLLDPVVE 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R Q+ DV +EI R L+T LTK AE LTE L + I+ Y+HS++ T + Sbjct: 426 VRPKGDQMTDVQNEIRRRIAHDRRTLITTLTKASAEALTEQLKQAGIKAHYLHSDIVTAD 485 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ I++DLR G +DVL+GINLLREGLD+PE LVAI DADK GFLRS+ +L+QTIGRAAR Sbjct: 486 RVAILKDLRRGVYDVLIGINLLREGLDLPEVSLVAIFDADKAGFLRSEAALLQTIGRAAR 545 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 N + ILY D T ++Q AID+T RR +Q +N+ + I PQ+ KI++ Sbjct: 546 NADGMAILYGDKTTDAMQQAIDQTRERRTRQQRYNQTNGITPQTPSRKILD 596 >gi|330723661|gb|AEC46031.1| excinuclease ABC subunit B [Mycoplasma hyorhinis MCLD] Length = 653 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 280/656 (42%), Positives = 414/656 (63%), Gaps = 4/656 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +++ P+GDQP AI L+ GI + + Q+LLGVTGSGKTFTMA VI + RP ++++ Sbjct: 2 FKLVSNFQPTGDQPKAIKALVDGIKNHKDHQVLLGVTGSGKTFTMANVIAQLNRPVLILS 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 K LA+QLY+EFK FFP N VEYFVSY+D+Y+PEAY+P D YI+K S N ++ MR Sbjct: 62 HTKTLASQLYTEFKEFFPENRVEYFVSYFDFYRPEAYLPAKDVYIDKTSQTNWDLEAMRM 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L R D IVVSSV+ IYG + + Y Q + L++ ++ + LVK QY R Sbjct: 122 SALNALTLRRDTIVVSSVAAIYGSYNPKEYKQHFLNLELNQELKPSDFAIELVKIQYSRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G+F GD I P+ + ++ FGN IE+IS+ +P+ + I+ + I+ Sbjct: 182 QVDTVPGSFSAKGDVFIISPAWTDKYLIKIEFFGNIIEKISKIHPVDKKIIQTFTSYTIF 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 S Y T+ TA+K I EL +L EKEG+LLE QRL +R+ D++ L G C+ Sbjct: 242 PASAYTLSPNTIQTAIKTILTELDFQLNYFEKEGKLLEKQRLNERVLNDVDSLNNFGFCK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+R++ R GE P +L +Y+PED+L+F+DESH I Q++ MY+GD RK +L Y Sbjct: 302 GIENYARHIDQREAGEQPYSLLDYLPEDALIFIDESHEMITQLNRMYKGDRSRKLSLVNY 361 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+FEE+ + I VSATP ++E+++ G ++ Q+IRPTGL+DP +E Sbjct: 362 GFRLPSALDNRPLKFEEFEKFKQPKIYVSATPSNYEIDKADGEVIHQLIRPTGLLDPVIE 421 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +R +Q++++YD + + R ++ +KR AE+L+ YL + +V Y+HS T E Sbjct: 422 VRPTHSQIDEIYDLLQEQKSKNERTIILTTSKRSAEELSRYLESKKQKVYYIHSTFTTFE 481 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R +I+ LR G +D ++GINLLREG+D+PE LV +L+AD+E F RSKTSL Q +GRAAR Sbjct: 482 RDDILIKLRKGIYDAIIGINLLREGIDLPEVSLVIVLNADEESFFRSKTSLTQFVGRAAR 541 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 + + K I +AD I+KS+ I + R R Q ++N +NI P+ V I++ I E Sbjct: 542 SNHGKAIFFADKISKSMAATIADNQRNRAIQHQYNLDNNITPKPVIRPIIQQIR----EK 597 Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 IS+ + +K + + SLRKQM +A N+E A ++ I L+ S Sbjct: 598 DQNKIISLIHNKNKETKAEKDKLIASLRKQMKDSAREENYELAIELQQVIAELEHS 653 >gi|213580239|ref|ZP_03362065.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 516 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 280/516 (54%), Positives = 357/516 (69%), Gaps = 22/516 (4%) Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 ++ L +G ++Q+ +L L + QY R D RGTFRV G+ I+IFP+ +D+A RV +F Sbjct: 1 MLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 60 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 ++E +S F PLTGQ V IY +HYVTPR + AM+ IK+EL R L Sbjct: 61 DEEVERLSLFDPLTGQVESTVPRYTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLAN 120 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 +LLE QRL QR +DLEM+ G C IENYSR+L+GR PGEPPPTLF+Y+P D LL V Sbjct: 121 NKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 180 Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533 DESHVTIPQI GMYRGD RK TL EYGFRLPS +DNRPL+FEE+ L P TI VSATPG Sbjct: 181 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 240 Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593 ++ELE+ +V+Q++RPTGL+DP +E+R TQV+D+ EI A R+L+T LTKR Sbjct: 241 NYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 300 Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAEDLTEYL E RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE L Sbjct: 301 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 360 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 VAILDADKEGFLRS+ SLIQTIGRAARNVN K ILY D IT S+ AI ET RRREKQ + Sbjct: 361 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 420 Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ---------------QLSLSKK 758 +N++H I PQ + +K+++++ A NI+ +L ++ K Sbjct: 421 YNEEHGITPQGLNKKVVDIL-------ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPK 473 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + L +QM A NL FEEAA+IRD++ +L+ Sbjct: 474 ALQQKIHELEEQMMQHAQNLEFEEAAQIRDQLHQLR 509 >gi|269115248|ref|YP_003303011.1| UvrABC system protein B [Mycoplasma hominis] gi|268322873|emb|CAX37608.1| UvrABC system protein B [Mycoplasma hominis ATCC 23114] Length = 656 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 283/649 (43%), Positives = 419/649 (64%), Gaps = 8/649 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI +L+ G+ ++ Q+LLGVTGSGKTFTMA VI + RP +V++ Sbjct: 4 FKLVSNYKPAGDQPQAINELVHGVLEGKEHQVLLGVTGSGKTFTMANVINQLNRPTLVIS 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA+QLYSE + FP N VEYFVSY+D+Y+PEAY+P++D YIEK S N+ ++ MR Sbjct: 64 HNKTLASQLYSELRELFPENRVEYFVSYFDFYKPEAYIPKSDLYIEKTSRNNKDLEAMRM 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SA +L R D IVV+SV+ IY + + Y Q + ++ ++ ++LL+ LV Y++ Sbjct: 124 SALNALSIRRDTIVVASVAAIYAEFNPKEYIQSFMPIESHMKIKLRDLLTKLVNLGYEKH 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + + G F G+ IEI P + + R+ MF + IE IS PLT + +++ I+ Sbjct: 184 NGDLSSGQFFNKGEVIEICPGYTSENNIRIEMFDDYIERISLINPLTKSIVEVCKSLTIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + Y + + I+ ELK R+ + + +LLEAQR+ + D++ L+ G + Sbjct: 244 PATTYNVEKGYIENICNSIESELKERVAYFKSQNQLLEAQRIHDKTLNDIDSLKEFGYVK 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENY+RY+ R PG+ P T+F+Y+P+D+++FVDESH+ IPQI GMY GD RK TL +Y Sbjct: 304 GIENYARYVDKREPGQKPYTIFDYLPKDAVIFVDESHLMIPQIIGMYEGDRSRKETLIKY 363 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+F E+ + I +SATPG +E+ + G +V Q IRPTGL+DP +E Sbjct: 364 GFRLPSALDNRPLKFNEYEEYKFPRIYMSATPGDYEINKANGELVTQYIRPTGLLDPIIE 423 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 I S Q++D++D + L ++ R L+ TK+ AE+L+ YL E I+ Y+H KT E Sbjct: 424 IHSKENQIQDIHDLLKLQIEKKERTLILTTTKKNAEELSLYLSEFKIKSAYIHDGFKTFE 483 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R EI++ LR+GK+DV++GINLLREG+D+PE L+ +L+AD G +R SLIQ +GRA+R Sbjct: 484 RNEILKGLRMGKYDVVIGINLLREGIDLPEVSLICVLNADSMGLMRDARSLIQIVGRASR 543 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739 N + KVI YAD IT S+Q AI + +R Q+++NK+HNI P+S+ + I I ILLE Sbjct: 544 NDHGKVIFYADNITTSMQKAIVDNEHKRTLQIKYNKEHNITPKSIIKPIPAPIQGSILLE 603 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788 D N +I ++ KK ++ ++ K M A +EEA IRD Sbjct: 604 D----NKAIKEANRTIHNKK---YIDNMIKHMKELARAKKYEEAIEIRD 645 >gi|215404067|ref|ZP_03416248.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987] gi|289745930|ref|ZP_06505308.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987] gi|289686458|gb|EFD53946.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987] Length = 569 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 273/497 (54%), Positives = 361/497 (72%), Gaps = 1/497 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 67 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 126 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 127 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 186 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 187 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 246 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 247 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 305 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 306 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 365 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 366 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 425 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 426 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 485 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 486 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 545 Query: 621 RIEIIRDLRLGKFDVLV 637 R+E++R LRL +D+LV Sbjct: 546 RVELLRQLRLVVYDLLV 562 >gi|12044925|ref|NP_072735.1| excinuclease ABC subunit B [Mycoplasma genitalium G37] gi|1351388|sp|P47319|UVRB_MYCGE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|1045749|gb|AAC71291.1| excinuclease ABC, B subunit [Mycoplasma genitalium G37] gi|166078912|gb|ABY79530.1| excinuclease ABC, B subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 656 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 294/664 (44%), Positives = 406/664 (61%), Gaps = 17/664 (2%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + N +K + FQ+ T+Y P+GDQP AI +L + + K Q+LLG TG+GKTFT+A VI+ Sbjct: 1 MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSE---FKTKQQVLLGATGTGKTFTIANVIQ 57 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 Q P +V+A NK LA QL++E K FP NAVEYF+SY+D+YQPEAY+P YIEK ++ Sbjct: 58 NSQLPTVVIAHNKTLAGQLFNELKQLFPKNAVEYFISYFDFYQPEAYLPSKGIYIEKSAT 117 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +NE I R+R S SL R D IVV SV+ IY S + + + +G + K + Sbjct: 118 VNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFVVGKDYDLKTIKD 177 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 LV Y + G FR GD +E+FP + + R+S F +E+I + PLT + Sbjct: 178 RLVSLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVEQICQIDPLTNKI 237 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430 + + IKI YV + L+ A+K IK+EL+ R+ K+ + AQRL +DL Sbjct: 238 LNQLFEIKIGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDL 297 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 L+ G C +ENY+R+L R P ++F+Y D LL +DESH T+PQ++GMY D Sbjct: 298 NDLKAWGFCSGVENYARHLELRMANSTPYSIFDYFKGDWLLVIDESHQTLPQLNGMYNTD 357 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK +L +YGFRLPS +DNRPL F E I VSATP E+ Q ++EQ++R Sbjct: 358 LSRKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVR 417 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PT LVDP + ++ QVED+ +EI Q R +TVLT +MAE+LTEYL ER I+V Sbjct: 418 PTYLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVA 477 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+H ++K LER+ +I DLR G+++ LVGINLLREGLD+PE LV I DAD G R + S Sbjct: 478 YIHKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERS 537 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQ IGRAARN + +V++YA+ +T+ +Q AIDET RRR Q+E+NK HN P++V K + Sbjct: 538 LIQIIGRAARNEHGRVVMYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVV-KPL 596 Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 + PI L+ A +N +K A +K L K+M AA N N+E A IRD I Sbjct: 597 TFVQPIKLK--AKSN-----------AEKNAALIKQLTKEMKKAAANQNYELAIEIRDSI 643 Query: 791 KRLK 794 L+ Sbjct: 644 FELE 647 >gi|289447242|ref|ZP_06436986.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CPHL_A] gi|289420200|gb|EFD17401.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CPHL_A] Length = 510 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 270/491 (54%), Positives = 356/491 (72%), Gaps = 1/491 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 7 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 67 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV TL Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485 Query: 621 RIEIIRDLRLG 631 R+E++ LRLG Sbjct: 486 RVELLPQLRLG 496 >gi|13507950|ref|NP_109899.1| excinuclease ABC subunit B [Mycoplasma pneumoniae M129] gi|2499098|sp|P75558|UVRB_MYCPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|1674323|gb|AAB96268.1| excinuclease ABC subunit B [Mycoplasma pneumoniae M129] gi|301633436|gb|ADK86990.1| excinuclease ABC, B subunit [Mycoplasma pneumoniae FH] Length = 657 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 294/668 (44%), Positives = 414/668 (61%), Gaps = 20/668 (2%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 +KD F +++++ P+GDQPAAIA+L + + E Q+LLG TG+GKTFT+A VI+ +Q Sbjct: 5 TKDSKLFHLKSNFAPTGDQPAAIAKLAE-FQTNE--QVLLGATGTGKTFTIANVIQKVQL 61 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +V+A NK LA QLY E K FP+NAVEYF+SY+D+YQPEAY+P YIEK +++NE+ Sbjct: 62 PTVVIAHNKTLAGQLYQELKELFPNNAVEYFISYFDFYQPEAYLPAKGVYIEKSATVNEE 121 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I R+R S SL R D IVV SV+ IY S ++Q + L +G EL + L+ Sbjct: 122 IKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPADFAQYSLWLVVGKEYGLSELKTQLIH 181 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y + G FR GD +E+FP + +D R+S F +E+I+ PLT + + + Sbjct: 182 LNYVVNKQQLTPGKFRFQGDVVEVFPGYAQDYVLRLSFFDQQLEQIARIDPLTNKVLETL 241 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + K+ Y+ + L A+ IK ELK RL E+ AQRL+ +DL L+ Sbjct: 242 NSFKLGPADEYIVNQNDLGVALDTIKAELKDRLKYFERLNFPERAQRLQTITEHDLADLK 301 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHR 493 G C +ENY+R+L R P P +F+Y + + LL VDESH T+PQI GMY D R Sbjct: 302 AWGVCSGVENYARHLEHRPPHSKPYNIFDYFTKGEWLLVVDESHQTLPQIKGMYNTDISR 361 Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553 K +L EYGFRLPS +DNRPL +EE+ I VSATP E++ +VEQ++RPT Sbjct: 362 KQSLIEYGFRLPSALDNRPLSYEEFRQGINKVIYVSATPREEEIQLSHNNVVEQLVRPTY 421 Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 L+DP V ++ QVED+ EI + R +TVLT +MAE+LT++L ERNI+V Y+H Sbjct: 422 LLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTIKMAENLTDFLKERNIKVAYIH 481 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 ++K LER+ ++ DLR G+++ LVGINLLREGLD+PE LVAI DAD G R + SLIQ Sbjct: 482 KDIKALERLILLTDLRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLIQ 541 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 IGRAARNV+ +VI+YA+TI++ + AI ET RRR Q+ +N++H+ P +V++ I + Sbjct: 542 IIGRAARNVHGRVIMYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPIT-LN 600 Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 PI L+ + S+++ A +K L K+M AA N N+E A IRD I L Sbjct: 601 QPIKLKTKS-------------SEQQKAALIKQLTKEMKQAAANQNYELAIEIRDSIFEL 647 Query: 794 KSSPYFQG 801 + F+G Sbjct: 648 EKQ--FRG 653 >gi|237719444|ref|ZP_04549925.1| LOW QUALITY PROTEIN: excinuclease ABC subunit B [Bacteroides sp. 2_2_4] gi|229451304|gb|EEO57095.1| LOW QUALITY PROTEIN: excinuclease ABC subunit B [Bacteroides sp. 2_2_4] Length = 615 Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust. Identities = 293/595 (49%), Positives = 411/595 (69%), Gaps = 14/595 (2%) Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RND 271 K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R SAT +LL R D Sbjct: 14 LKVFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRLSATSALLSGRKD 73 Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VVSSVSCIYG+G+ + + +++++ G +++ L LV Y R DI + RG FRV Sbjct: 74 VVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVRNDIDLNRGNFRV 133 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 GD+++I+ ++ +++ RV+ +G++I+ I E P+TG I + KIY + ++T + Sbjct: 134 KGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKIYPANLFMTTKEA 192 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 A+ I+++L ++ E GR EA+RL +R+TYD+EM+ G C IENYSRY G Sbjct: 193 TLRAIHEIEDDLTKQVAFFESIGREYEAKRLYERVTYDMEMIRELGHCSGIENYSRYFDG 252 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511 R G P L ++ P+D L+ +DESHV++PQI MY GD RK L EYGFRLP+ MDNR Sbjct: 253 RAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVEYGFRLPAAMDNR 312 Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571 PL+FEE+ + I VSATP +EL Q +GI+VEQ+IRPTGL+DP +E+R + Q++D+ Sbjct: 313 PLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPIIEVRPSLNQIDDL 372 Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 +EI L ++ R+L+T LTKRMAE+L EYL N+R Y+HS+V TLER++I+ DLR G Sbjct: 373 MEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTLERVKIMDDLRQG 432 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691 +DVL+G+NLLREGLD+PE LVAILDADKEGFLRS SL QT GRAARNVN KVI+YAD Sbjct: 433 VYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIMYAD 492 Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI------DPILLE----- 739 +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V D +L E Sbjct: 493 KMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKEADELLKERHAYV 552 Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +T NI+ D +SK + + ++ RK M AA L F EAA+ RDE+ +L+ Sbjct: 553 EPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYRDELLKLE 607 >gi|329577601|gb|EGG59034.1| excinuclease ABC, B subunit [Enterococcus faecalis TX1467] Length = 523 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 267/523 (51%), Positives = 364/523 (69%), Gaps = 1/523 (0%) Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 +V+SVSCI+G+G YSQ +V L++G +++ ELL SLV Q++R DI RG FRV G Sbjct: 1 MVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERNDIDFQRGRFRVRG 60 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D +EIFP+ ++ A RV FG++I+ I E LTG+ + E + I+ +H+VT + Sbjct: 61 DVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIFPATHFVTNEEHME 120 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G IENYSR++ GR Sbjct: 121 HAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTSGIENYSRHMDGRQ 180 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513 GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +YGFRLPS +DNRPL Sbjct: 181 EGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLPSALDNRPL 240 Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573 R EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VEIR Q++D+ Sbjct: 241 RLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVEIRPIMGQIDDLVG 299 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 EI+ ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS+VKTLER EIIRDLRLG+F Sbjct: 300 EIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLERTEIIRDLRLGEF 359 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 D+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAARN KVI+YAD I Sbjct: 360 DILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGKVIMYADKI 419 Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753 T S+Q A+DET RRR Q +N++H I P+++ ++I ++I D T + +D Sbjct: 420 TDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETVVQLDKSYE 479 Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 480 DLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 522 >gi|326903246|gb|EGE50179.1| LOW QUALITY PROTEIN: excinuclease ABC [Mycobacterium tuberculosis W-148] Length = 521 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 270/496 (54%), Positives = 355/496 (71%), Gaps = 2/496 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 28 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 88 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 148 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 207 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 208 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 266 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 267 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 327 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 386 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 387 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 446 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E IRVRY+HSEV T Sbjct: 447 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTCA 506 Query: 621 RIEIIRDLRLGKFDVL 636 + LRLG +DVL Sbjct: 507 GSSCAQ-LRLGDYDVL 521 >gi|330980694|gb|EGH78797.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 502 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 269/498 (54%), Positives = 350/498 (70%), Gaps = 14/498 (2%) Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 LL L QY R D+ R TFRV GD I+I+P+ + A R+ +F +++E +S F PLT Sbjct: 2 LLRRLADLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLT 61 Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427 G+ IR + Y SHYVTPR TL AM+ IK EL+ RL L + +L+EAQRLEQR Sbjct: 62 GEVIRKLPRFTFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTR 121 Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487 +DLEM+ G C IENYSRYL+GR G PPPTLF+Y+P D+LL +DESHV++PQ+ MY Sbjct: 122 FDLEMMLELGYCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMY 181 Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547 +GD RK TL EYGFRLPS +DNRP+RF+EW + P TI VSATPG++E E G IVEQ Sbjct: 182 KGDRSRKETLVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQ 240 Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 ++RPTGLVDP +EIR A TQV+D+ EI+ A R+L+T LTKRM+EDLT+YL + + Sbjct: 241 VVRPTGLVDPQIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGV 300 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RVRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADKEGFLRS Sbjct: 301 RVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 360 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727 SLIQTIGRAARN+N + ILYAD IT S++ AI ET RRREKQ+ N +H I P+ V + Sbjct: 361 DRSLIQTIGRAARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFK 420 Query: 728 KIMEVIDPIL-----------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 + ++++ + AA N + + S S+ + ++ L ++M+ A Sbjct: 421 DVADIMEGATVPGSRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLAR 478 Query: 777 NLNFEEAARIRDEIKRLK 794 +L FE AA++RDEI +L+ Sbjct: 479 DLEFEAAAQMRDEIGKLR 496 >gi|260364874|ref|ZP_05777452.1| UvrABC system protein B [Vibrio parahaemolyticus K5030] gi|308113949|gb|EFO51489.1| UvrABC system protein B [Vibrio parahaemolyticus K5030] Length = 496 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 265/493 (53%), Positives = 353/493 (71%), Gaps = 17/493 (3%) Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVE 375 Y R D+ RG FRV G+ I+IFP+ + A RV MF ++++ IS F PLTG K R++ Sbjct: 1 YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP 60 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 IY +HYVTPR + A++ IK EL++R +L + +L+E QR+ QR +D+EM+ Sbjct: 61 RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNE 120 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI MY+GD RK Sbjct: 121 LGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKE 180 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL E+GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G I +Q++RPTGL+ Sbjct: 181 TLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLL 240 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP +E+R TQV+D+ EI + A + R+L+T LTKRMAEDLTEYL+E ++RVRY+HS+ Sbjct: 241 DPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD 300 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTI Sbjct: 301 IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 360 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARN+ K ILYAD ITKS++ A+DET RRREKQ +N+K I PQ++K I ++++ Sbjct: 361 GRAARNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME- 419 Query: 736 ILLEDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEE 782 L D + + +Q+ LSK ++ + + L M+ A +L FE Sbjct: 420 --LGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFEL 477 Query: 783 AARIRDEIKRLKS 795 AA RDEI++L++ Sbjct: 478 AAEKRDEIEKLRA 490 >gi|291333201|gb|ADD92912.1| excinuclease ABC subunit B [uncultured archaeon MedDCM-OCT-S02-C115] Length = 761 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 297/744 (39%), Positives = 436/744 (58%), Gaps = 84/744 (11%) Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 S D+ F++ +++ P+GDQ +AI +L+ + + ++ +LLGVTGSGKTF MA +IE + Sbjct: 20 SPDVARFRIHSEHLPAGDQESAIEKLVSQLENNQERCVLLGVTGSGKTFAMAHIIERLNI 79 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P ++++ NK LA QL+ E FP N VEYFVS+YDYYQPEAY+P+ D YI+KE SINE+ Sbjct: 80 PTLIISHNKTLARQLHQEMAGLFPENGVEYFVSHYDYYQPEAYLPKRDLYIDKELSINER 139 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 I++ R + SL+ R DCIVVSSVSCIYG+ + E++ ++ G +E +L+ LV Sbjct: 140 IEQERFATVASLVSRPDCIVVSSVSCIYGLNAPETFLAYHCRIHTGQEIEPIDLIRELVA 199 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 QY R + RG R+ G++++++ PS D RV +E I P+T + + Sbjct: 200 LQYTRTSSDLKRGEVRLRGENLDVWMPSR--DDPLRVRFGFEGVEHIQICDPVTWEILDE 257 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 ++ I+ ++ A++ I+ EL R+ EL+ E + LEA RLEQR YDLEML Sbjct: 258 LDEAWIHPKEFFMVSPERFEAALENIETELDGRVAELKSESKELEANRLEQRTRYDLEML 317 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI----------PEDSLLFVDESHVTIPQI 483 G C ++ENYS + GR GE P L ++ P++ L+ +DESHVT+PQ+ Sbjct: 318 REIGHCTAVENYSMHFDGREHGERPYCLLDFFAATAKQFHGNPDNFLVIMDESHVTLPQV 377 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE-LEQCQ- 541 GMY GD RK L E+GFRLPS DNRPL+ +E+ L P + VSATPG E L C+ Sbjct: 378 GGMYAGDRSRKLNLIEHGFRLPSAADNRPLKQKEFQKLVPQMLYVSATPGERELLHLCEV 437 Query: 542 ----------------GI--------------------IVEQI----IRPTGLVDPPVEI 561 G+ ++E+I IRPTGL+DP +E+ Sbjct: 438 TGQDAPLGLRHMAGGGGVDEPEYSKKHPDAESMYDMLQMIEEIPRMEIRPTGLLDPTIEV 497 Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R QV D+ EIN + G R L+TVLT + AE++ +YL + I+ ++HSE+ T+ER Sbjct: 498 RDTEGQVADLLSEINARIKVGERTLVTVLTIKFAEEVAQYLNKMGIKAHHLHSEIDTIER 557 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 EII LR+G D +VGINLLREGLDIPE LVAI DAD++GFLR++ SL+QTIGRAARN Sbjct: 558 TEIINALRIGHIDTIVGINLLREGLDIPEVSLVAIFDADRQGFLRNERSLLQTIGRAARN 617 Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILL 738 N KVILYAD+++ + +I +T RRE+Q+ HN+++ I P ++++ K+ +D ++ Sbjct: 618 SNGKVILYADSMSPPMTASIRQTLERRERQIAHNEENGIIPTTIQKALPKMGSDVDDLIA 677 Query: 739 EDAA----------------TTNISIDAQQLSLSKKKGKA----------HLKSLRKQMH 772 + N+++ A Q S S ++ L++ M Sbjct: 678 GTSGGKRLVGSKGGRKGGDWANNLNVGAGQWSRSDSVASNISQPIEEIDYSIEELKEMMQ 737 Query: 773 LAADNLNFEEAARIRDEIKRLKSS 796 AA L+FE AA +RD+I ++SS Sbjct: 738 QAALELDFERAAMLRDKILEIQSS 761 >gi|262165260|ref|ZP_06032997.1| excinuclease ABC subunit B [Vibrio mimicus VM223] gi|262024976|gb|EEY43644.1| excinuclease ABC subunit B [Vibrio mimicus VM223] Length = 511 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/506 (51%), Positives = 355/506 (70%), Gaps = 17/506 (3%) Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 + Q+++L L + QY R D+ RG FRV G+ I+IFP+ + A RV MF +++E IS Sbjct: 2 INQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISL 61 Query: 363 FYPLTGQ-KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421 F PLTG R++ +Y +HYVTPR + A++ IK EL++R L +LLE QR Sbjct: 62 FDPLTGVITSRDLARYTVYPKTHYVTPRERILEAIELIKSELQVRRQYLLDNNKLLEEQR 121 Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481 + QR +D+EM+ G C IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+P Sbjct: 122 ISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVP 181 Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541 QI M++GD RK TL E+GFRLPS +DNRPL+F+E+ L P TI VSATPG +EL + Sbjct: 182 QIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSG 241 Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601 G + +Q++RPTGL+DP +E+R TQV+D+ E + A RIL+T LTKRMAEDLTEY Sbjct: 242 GEVADQVVRPTGLLDPIIEVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEY 301 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L+E ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAILDADK Sbjct: 302 LHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADK 361 Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721 EGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ A+DET RRREKQ +N++ +I Sbjct: 362 EGFLRSERSLIQTIGRAARNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLSIT 421 Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-------------KKGKAHLKSLR 768 PQ +K + ++++ L D A + +++ + L+K ++ + + L Sbjct: 422 PQPLKRSVKDIME---LGDIAKSRKQKNSKVVPLAKVAEESATYQVLTPQQLEKEISKLE 478 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794 M+ A NL FE AA+ RDEI +L+ Sbjct: 479 AAMYQHAQNLEFELAAQKRDEIHQLR 504 >gi|227328798|ref|ZP_03832822.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 441 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/437 (56%), Positives = 318/437 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ P+GDQP AI +L +G+ Q LLGVTGSGKTFT+A VI + RP +++A Sbjct: 5 FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D IVV+SVS IYG+G + Y +M++ L G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +++A RV +F ++E +S F PLTG ++ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK EL R L +L+E QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD RK TL EY Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ G +++Q++RPTGL+DP +E Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIIE 424 Query: 561 IRSARTQVEDVYDEINL 577 +R TQV+D+ EI L Sbjct: 425 VRPVATQVDDLLSEIRL 441 >gi|254672084|emb|CBA04744.1| excinuclease ABC subunit B [Neisseria meningitidis alpha275] Length = 515 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/455 (53%), Positives = 334/455 (73%), Gaps = 1/455 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AIA LL+G+ Q LLGVTGSGKT+TMA VI RPAI+MA Sbjct: 35 FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D +IEK+S+INE I++MR Sbjct: 95 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++L+ R+D I+V++VS IYGIG Y QM++ +K GD++EQ++++++LV QY+R Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD I+++P+ + A R+S+F ++I+ + F PL+G I+ V ++ Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +SHYVTPR T+ A + IKEEL+ R+ KE R +E QR+EQR +DLEML G C+ Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+ +G+ GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD RK L +Y Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL+F E+ + P T+ VSATP +E E+ G +VEQ++RPTGLVDP + Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 IR TQV+D+ EIN Q+G R+L+T LTKRMA Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMA 488 >gi|289761782|ref|ZP_06521160.1| excinuclease ABC subunit B [Mycobacterium tuberculosis GM 1503] gi|289709288|gb|EFD73304.1| excinuclease ABC subunit B [Mycobacterium tuberculosis GM 1503] Length = 554 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/464 (54%), Positives = 335/464 (72%), Gaps = 1/464 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 49 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 108 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 109 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 168 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 169 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 228 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 229 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 287 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 288 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 347 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 348 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 407 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 408 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 467 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 ++ + Q++D+ EI A R+L+T LTK+MAEDLT+YL E Sbjct: 468 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLE 511 >gi|240144767|ref|ZP_04743368.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82] gi|257203290|gb|EEV01575.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82] Length = 525 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/523 (50%), Positives = 357/523 (68%), Gaps = 3/523 (0%) Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 IVV+SVSCIYG+GS E Y M+V L+ G ++ +++ +LV QY R D+ RGTFRV Sbjct: 1 IVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRNDMDFHRGTFRVR 60 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 GD++EIFP++ D A RV FG++I+ I+E LTG+ +E ++ SHYV P+ + Sbjct: 61 GDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVFPASHYVVPQEKI 120 Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 A I++EL R+ + E +LLEAQR+ +R +D+EML+ TG C IENYSR+L G Sbjct: 121 LKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCSGIENYSRHLAGL 180 Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512 G P TL +Y +D L+ VDESH+TIPQI GMY GD RK+TL +YGFRLPS DNRP Sbjct: 181 PAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDYGFRLPSAKDNRP 240 Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572 L FEE+ + VSATP +E E + + EQIIRPTGL+DP V +R Q++D+ Sbjct: 241 LNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVVVRPVEGQIDDLI 299 Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 E+N + ++L+T LTK+MAEDLT+Y+ E IRV+Y+HS++ TLER EIIRDLRL Sbjct: 300 GEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLERAEIIRDLRLDV 359 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692 FDVLVGINLLREGLDIPE LVAILDADKEGFLRS+TSLIQTIGRAARN VI+YAD Sbjct: 360 FDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAARNSEGHVIMYADK 419 Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752 IT S+++A++ET RRRE Q +N++H I P ++++ + E+I + + A ++ Sbjct: 420 ITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS--VSKKVAKEEMNFKKDP 477 Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 S+++ + + ++K+M AA +LNFE AA RD++ LK Sbjct: 478 ESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 520 >gi|326560345|gb|EGE10732.1| excinuclease ABC subunit B [Moraxella catarrhalis 46P47B1] Length = 453 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 253/450 (56%), Positives = 313/450 (69%), Gaps = 9/450 (2%) Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 MF ++IE+I+ F PLTG+ I++V I IY SHYVTP+ L A IKEEL RL Sbjct: 1 MFDDEIEKITWFDPLTGKNIKSVPRITIYPKSHYVTPKDKLEAASATIKEELAQRLEYFR 60 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 + +EAQR+++R YDLEM+ G C IENYSR+L+GR GE PPTLF+YIP D+LL Sbjct: 61 ANDKFIEAQRIKERTQYDLEMIGQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPSDALL 120 Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531 F+DESHVT+PQI MY+GD RK TL +YGFRLPS MDNRP++FEEW + P TI VSAT Sbjct: 121 FIDESHVTVPQIGAMYKGDKSRKETLVQYGFRLPSAMDNRPMKFEEWEKISPATIFVSAT 180 Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 P +ELE+ + + VEQ++RPTGLVDP +EIR TQV+D+ EINL R+L+T LT Sbjct: 181 PAQYELEKSEQV-VEQVVRPTGLVDPILEIRPVLTQVDDILGEINLKKSLDERVLITTLT 239 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 KRMAEDLT YL E I+V Y+HS++ T+ER++II +LR G FDVLVGINLLREGLD+PE Sbjct: 240 KRMAEDLTSYLKEYGIKVAYLHSDIDTVERMKIIHELRTGIFDVLVGINLLREGLDMPEV 299 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711 LVAI DADKEGFLRS+ SLIQTIGRAAR+VN K ILYADTIT S+Q AIDET RRR KQ Sbjct: 300 SLVAIFDADKEGFLRSERSLIQTIGRAARHVNGKAILYADTITPSMQKAIDETERRRAKQ 359 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI-------SIDAQQLSLSKKKGKAHL 764 + N++H I P+S I + ID E + I +D L K K + Sbjct: 360 IAFNQEHGITPKSASRAITDKIDTGDDETSEVVQIVLSQALAGVDENILHSPKLLAK-EI 418 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 L KQM + L FEEAA++RD + LK Sbjct: 419 ARLEKQMQALSRELKFEEAAKVRDTVIALK 448 >gi|213421127|ref|ZP_03354193.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 423 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/417 (58%), Positives = 306/417 (73%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EY Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557 GFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDP 421 >gi|34763218|ref|ZP_00144181.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887098|gb|EAA24206.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 506 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 249/496 (50%), Positives = 350/496 (70%), Gaps = 16/496 (3%) Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361 + +KEL+ L+ +Y R DI RG FR+ GD I+I+PS++ + +R+ +G+D+EEIS Sbjct: 10 GISRKELMKKLIALRYDRNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEIS 68 Query: 362 EFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 E LTGQK++ N+E I IY + Y+T + +K IK++LK+ + + E + +LLEAQ Sbjct: 69 EINTLTGQKVKKNLERIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQ 128 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480 RL+QR YDLEM+ G C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+ Sbjct: 129 RLKQRTEYDLEMITEIGYCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITV 188 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQ+ GMY GD RK +L E GFRL + +DNRPLRFEE+ T+ +SATPG +E+E Sbjct: 189 PQVRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVS 248 Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 I EQ+IRPTG+VDP +EIR + QV+D+ DEI A + R+L+T LTK++AE+LTE Sbjct: 249 DNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTE 308 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 Y E ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE LVAI++AD Sbjct: 309 YYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEAD 368 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720 KEGFLRS+ SL+QTIGRAARNV +VILYAD +T S++ AI ET RRR+ Q E+N ++I Sbjct: 369 KEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHI 428 Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLA 774 +P+S+ ++I ED + I+ ++ +KK + KA ++ L K++ Sbjct: 429 DPKSIVKEIA--------EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKL 480 Query: 775 ADNLNFEEAARIRDEI 790 + L+FE+A +RDE+ Sbjct: 481 VEELDFEQAIVLRDEM 496 >gi|315304695|ref|ZP_07874898.1| UvrABC system protein B [Listeria ivanovii FSL F6-596] gi|313626935|gb|EFR95865.1| UvrABC system protein B [Listeria ivanovii FSL F6-596] Length = 494 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 257/494 (52%), Positives = 341/494 (69%), Gaps = 5/494 (1%) Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 + + +LL LV QY R DI RG FRV GD +EIFP+ ++ RV FG++IE I E Sbjct: 3 ISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRVEFFGDEIERIRE 62 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 LTG+ I E + I+ SH+VT + A+ IK EL+ RL L + +LLEAQRL Sbjct: 63 VDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIINIKAELEDRLKVLRADNKLLEAQRL 122 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 EQR YDLEM+E G C IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQ Sbjct: 123 EQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQ 182 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542 I GM+ GD RK L ++GFRLPS +DNRPLR EE+ + +SATPG +ELE+ Sbjct: 183 IRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPD 242 Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 +I EQIIRPTGL+DP VEIR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL Sbjct: 243 VI-EQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYL 301 Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 E ++V+Y+HSEVKTLERIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKE Sbjct: 302 KEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKE 361 Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722 GFLRS+ SLIQT+GRAARN N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P Sbjct: 362 GFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITP 421 Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFE 781 ++K++I +I AA +I LS +SKK+ ++ + +M AA L+FE Sbjct: 422 MTIKKEIRGIIAAT---SAADEREAIKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFE 478 Query: 782 EAARIRDEIKRLKS 795 AA +RD + +K+ Sbjct: 479 RAAELRDALLEIKA 492 >gi|299782900|gb|ADJ40898.1| Excinuclease ABC, B subunit [Lactobacillus fermentum CECT 5716] Length = 457 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/436 (52%), Positives = 309/436 (70%), Gaps = 1/436 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ +DY P+GDQP AIA L KG+ + Q+LLG TG+GKTFT++ VI+ + RP ++++ Sbjct: 10 FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH Sbjct: 70 HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL+ERND IVV+SVS I+G+GS Y +V L++G + + LL LV+ Q+ R Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ E+ A RV FG++I+ I E LTG+ I + E + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T ++ A+ I+ ++K ++ + KEG+LLEAQRL+QR TYD+EM+ G Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRY+ R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD RK L +Y Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL +E+ I +SATPG +E Q +V+QIIRPTGL+DP +E Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428 Query: 561 IRSARTQVEDVYDEIN 576 +R Q++D+ EIN Sbjct: 429 VRPVMGQIDDLVGEIN 444 >gi|289645475|ref|ZP_06477432.1| excinuclease ABC subunit B [Frankia symbiont of Datisca glomerata] gi|289504715|gb|EFD25856.1| excinuclease ABC subunit B [Frankia symbiont of Datisca glomerata] Length = 422 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/423 (53%), Positives = 309/423 (73%), Gaps = 2/423 (0%) Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+NE+++R+RHSAT SLL R D +VV Sbjct: 2 LLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNEEVERLRHSATMSLLTRRDVVVV 61 Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 +SVSCIYG+G+ E Y + +V+L++G+ +++ LL V QY R DI RGT RV GD+ Sbjct: 62 ASVSCIYGLGTPEEYIKRMVRLRVGEEIDRDSLLRRFVDVQYARNDIAFTRGTLRVRGDT 121 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 +E+FP + E++A R+ MFG++IE ++ +PLTG+ +R + + ++ +HYV + A Sbjct: 122 VEVFPVY-EELAVRIEMFGDEIERLAYLHPLTGEIVREAQEVFVFPATHYVAGPERMERA 180 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 + I+ EL RL ELE++ RLLEAQRL R TYD+EM+ G C IENYSR++ GR G Sbjct: 181 IAGIETELTDRLAELERQSRLLEAQRLRMRTTYDIEMMRQVGFCSGIENYSRHIDGRVAG 240 Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515 P TL +Y P+D LL +DESH T+PQI GM+ GD RK L E+GFRLPS MDNRPLR+ Sbjct: 241 SAPHTLLDYFPDDFLLVIDESHNTVPQIGGMFEGDMSRKRNLVEHGFRLPSAMDNRPLRW 300 Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575 EE+ T+ +SATPG +EL + G +VEQIIRPTGL+DP V ++ R Q++D+ EI Sbjct: 301 EEFCARIDQTVYLSATPGPYELSRADG-VVEQIIRPTGLLDPEVVLKPTRGQIDDLVGEI 359 Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 + A++ R+L+T LTK+MAEDLT+YL E IRVRY+HS++ TL R+E++ LR G+FDV Sbjct: 360 RVRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLRRVELLTGLRKGEFDV 419 Query: 636 LVG 638 LVG Sbjct: 420 LVG 422 >gi|289569678|ref|ZP_06449905.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T17] gi|289543432|gb|EFD47080.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T17] Length = 511 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 240/446 (53%), Positives = 319/446 (71%), Gaps = 1/446 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQPAAI +L + I++ E+ +LLG TG+GK+ T A +IE +QRP +VMA Sbjct: 67 FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 126 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQL +E + PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH Sbjct: 127 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 186 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LL R D +VV+SVSCIYG+G+ +SY V+LK+G+ V + LL LV QY R Sbjct: 187 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 246 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG+FRV GD++EI PS+ E++A R+ FG++IE + +PLTG+ IR V++++I+ Sbjct: 247 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 305 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYV + A+ I+EEL RL ELE +G+LLEAQRL R YD+EM+ G C Sbjct: 306 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 365 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD RK L EY Sbjct: 366 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 425 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS DNRPL +EE+ T+ +SATPG +EL Q G VEQ+IRPTGLVDP V Sbjct: 426 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 485 Query: 561 IRSARTQVEDVYDEINLAAQQGLRIL 586 ++ + Q++D+ EI A R+L Sbjct: 486 VKPTKGQIDDLIGEIRTRADADQRVL 511 >gi|300814257|ref|ZP_07094531.1| putative excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511630|gb|EFK38856.1| putative excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 440 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 239/436 (54%), Positives = 307/436 (70%), Gaps = 1/436 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI +L++G++ K Q LLGVTGSGKTFTMA VIE +QRPA+V+A Sbjct: 3 FKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERVQRPALVIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QL SE K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N++ID++RH Sbjct: 63 HNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVNDEIDKLRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+G Y + + L+ G ++ E++S LV QY R Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKLVDIQYVRN 182 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV GD +EIFP+ + + RV FG++I+ ISE LTG+ +R + I Sbjct: 183 DFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLRLLTHAYIT 242 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHY T + + A+ I+EEL+ RL L+ + +LLEAQRLEQR YDLEMLE G C Sbjct: 243 PASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEMLEEMGYCN 302 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR+L+ R G P TL +Y P+D + +DESH +IPQI GM+ GD RK TL EY Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRSRKETLVEY 362 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPLRF E+ + + VSATPG +E E + EQIIRPTGL+DP + Sbjct: 363 GFRLPSALDNRPLRFFEFESMMKQCMYVSATPGPYEREHEEN-SAEQIIRPTGLLDPQIF 421 Query: 561 IRSARTQVEDVYDEIN 576 +R + Q++D+ EIN Sbjct: 422 VRPVKNQIDDLVSEIN 437 >gi|282908145|ref|ZP_06315976.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327810|gb|EFB58092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] Length = 490 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 252/490 (51%), Positives = 337/490 (68%), Gaps = 8/490 (1%) Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 L LV QY R DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG Sbjct: 4 LGKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTG 63 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + ++ E I+ SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR Y Sbjct: 64 EVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNY 123 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488 DLEM+ G C IENYS +LT R G P TL +Y +D L+ +DESHVT+PQ+ GMY Sbjct: 124 DLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYN 183 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 GD RK L ++GFRLPS +DNRPL+FEE+ + VSATPG +E+E + VEQI Sbjct: 184 GDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKM-VEQI 242 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 IRPTGL+DP +E+R Q++D+ EI ++ R+L+T LTK+M+EDLT Y+ E I+ Sbjct: 243 IRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIK 302 Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE LV ILDADKEGFLRS Sbjct: 303 VNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSN 362 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARN +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +K Sbjct: 363 RSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKK 422 Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785 I ++I + D AQ + ++KK+ + + ++ K+M AA +L+FE+A Sbjct: 423 IHDLISATVENDENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATE 478 Query: 786 IRDEIKRLKS 795 +RD + LK+ Sbjct: 479 LRDMLFELKA 488 >gi|219119648|ref|XP_002180579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408052|gb|EEC47987.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 615 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 259/600 (43%), Positives = 366/600 (61%), Gaps = 25/600 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AIAQL + ++ +L G+TG+GKT MA +I RP +V+ Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL E ++F NAVE FVSYY++Y PE++V T YI K+SS+N +ID +RH Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE-QKELLSSLVKQQYKR 319 ATR+LL RND +VV+SVSCIYG+G + Y ++GD V ++L+ L ++ Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 320 --QDIGIIRGTFRVCGDS------IEIFPSHLEDVAWRVSMF---------GNDIEEISE 362 D RGT++ + ++P+H E R+ G + I E Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEFASVGDGAVKDGMVVRAIQE 239 Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422 P ++ + + +I+ H+VT L A I+EEL+ R+ EL EG+ +EA RL Sbjct: 240 GTP---SGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRL 296 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVT 479 +QR+ D+ M+ TG C ENYSR+L GR G PP TL +Y+ D LL VDESHVT Sbjct: 297 QQRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVT 356 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 +PQ+ MY GD RK L ++G+RLPS +DNRPL+ EE+ T+ VSATP EL + Sbjct: 357 LPQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGK 416 Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599 + VE +IRPT + DP +E+RS Q++++ E+ + + R L+ LTKR AEDL+ Sbjct: 417 AEYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLS 476 Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 YL E I Y+HS + T ER + +R L++G+ D LVGIN LREGLD+P+ LVA+L+A Sbjct: 477 SYLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNA 536 Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 D EGFLRS+T+L+Q +GRAARN K I YA T+++Q ID+T RREKQ +N ++N Sbjct: 537 DSEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNN 596 >gi|323971944|gb|EGB67165.1| excinuclease ABC [Escherichia coli TA007] Length = 414 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 239/409 (58%), Positives = 297/409 (72%), Gaps = 12/409 (2%) Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 M+ IKEEL R L + +LLE QRL QR +DLEM+ G C IENYSR+L+GR PG Sbjct: 1 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 60 Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515 EPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EYGFRLPS +DNRPL+F Sbjct: 61 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 120 Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575 EE+ L P TI VSATPG++ELE+ G +V+Q++RPTGL+DP +E+R TQV+D+ EI Sbjct: 121 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 180 Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ER+EIIRDLRLG+FDV Sbjct: 181 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 240 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695 LVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAARNVN K ILY D IT Sbjct: 241 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 300 Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN---------- 745 S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ A T Sbjct: 301 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAKGRGKSRPI 358 Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D + +S K + + L M A NL FEEAA+IRD++ +L+ Sbjct: 359 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 407 >gi|330880879|gb|EGH15028.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str. race 4] Length = 374 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/366 (62%), Positives = 281/366 (76%), Gaps = 1/366 (0%) Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 A RV +F +++E +S F PLTG+ IR + Y SHYVTPR TL AM+ IK EL+ R Sbjct: 8 AIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLIEAMEGIKVELQER 67 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 L L + +L+EAQRLEQR +DLEM+ G C IENYSRYL+GR G PPPTLF+Y+P Sbjct: 68 LEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCNGIENYSRYLSGRPSGAPPPTLFDYLP 127 Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526 D+LL +DESHV++PQ+ MY+GD RK TL EYGFRLPS +DNRP+RF+EW + P TI Sbjct: 128 ADALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEAISPQTI 187 Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586 VSATPG++E E G +VEQ++RPTGLVDP +EIR A TQV+D+ EI+ R+L Sbjct: 188 FVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIEIRPALTQVDDLLSEIHKRTALEERVL 246 Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 +T LTKRM+EDLT+YL + +RVRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGL Sbjct: 247 VTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 306 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706 D+PE LVAILDADKEGFLRS SLIQTIGRAARN+N + ILYAD IT S++ AI ET R Sbjct: 307 DMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNGRAILYADRITGSMERAIGETER 366 Query: 707 RREKQL 712 RR+KQL Sbjct: 367 RRDKQL 372 >gi|90409505|ref|ZP_01217549.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3] gi|90309389|gb|EAS37630.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3] Length = 404 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/400 (53%), Positives = 280/400 (70%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + P+GDQP AI L+ GI Q LLGVTGSGKTFT+A I + RP +++A Sbjct: 5 FELHAKFSPAGDQPQAIESLVAGIEDGVAFQTLLGVTGSGKTFTLANTIAQLNRPTLILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TD++IEK+++IN I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDSFIEKDAAINAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G ++Y +M++ L +G+ + +E+L LV QY R Sbjct: 125 SATKALLERTDVVLVASVSAIYGLGDPKAYLKMMLHLSVGEFISSREILQRLVDLQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D + RGTFRV G+ I+IFP+ E A R+ +F +++E IS F PLTGQ + + + IY Sbjct: 185 DTELSRGTFRVRGEIIDIFPADSEIEALRIELFDDEVENISVFDPLTGQTLDKLARVTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + A+K IKEEL R +L+E QR+ +R +D+EM+ G C Sbjct: 245 PKTHYVTPREQIIKAIKSIKEELVERKKSFLSNNKLIEEQRISERTLFDIEMMTELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSRYL+GR+ G PPTLF+Y P SLL +DESHVTIPQI MY+GD RK L Y Sbjct: 305 GIENYSRYLSGRDQGAAPPTLFDYFPAKSLLIIDESHVTIPQIGAMYKGDRSRKENLVNY 364 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 GFRLPS +DNRPL+F E+ L TI VSATP +E+E+ Sbjct: 365 GFRLPSALDNRPLKFSEFEKLAAQTIYVSATPADYEIEKS 404 >gi|309807262|ref|ZP_07701233.1| putative excinuclease ABC subunit B [Lactobacillus iners LactinV 03V1-b] gi|308166353|gb|EFO68561.1| putative excinuclease ABC subunit B [Lactobacillus iners LactinV 03V1-b] Length = 467 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/453 (46%), Positives = 308/453 (67%), Gaps = 1/453 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQ AI QL K Q+L G TG+GKTFTMA +I + +P +V++ Sbjct: 10 FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK L QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH Sbjct: 70 HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + T +L++R D IVV+SVSCI+G+G Y++ ++ L +G+ E+ LL LV QY R Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ + RG FRV GD +EIFP+ + +RV FG++I++I E LTG+ + E I ++ Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +H++T + A+ IK+EL +++ + +G+LLEAQR++QR YD+EM++ G Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 IENYSR++ R GEPP TL ++ P+D L+ +DESH T+P++ MY GD RK TL +Y Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369 Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560 GFRLPS +DNRPL+ E+ + VSATPG +EL + +VEQIIRPTGL+DP VE Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428 Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593 +R Q++D+ EIN+ ++ R+ + ++ Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFCDYIDQK 461 >gi|301306934|ref|ZP_07212978.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1] gi|300837860|gb|EFK65620.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1] Length = 380 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 221/375 (58%), Positives = 276/375 (73%), Gaps = 12/375 (3%) Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489 +EM+ G C IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRG Sbjct: 1 MEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 60 Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549 D RK TL EYGFRLPS +DNRPL+FEE+ L P TI VSATPG++ELE+ G +V+Q++ Sbjct: 61 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 120 Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 RPTGL+DP +E+R TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RV Sbjct: 121 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 180 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 RY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ Sbjct: 181 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 240 Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 SLIQTIGRAARNVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+ Sbjct: 241 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 300 Query: 730 MEVIDPILLEDAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779 ++++ L ++ A T + D + +S K + + L M A NL Sbjct: 301 VDIL--ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 358 Query: 780 FEEAARIRDEIKRLK 794 FEEAA+IRD++ +L+ Sbjct: 359 FEEAAQIRDQLHQLR 373 >gi|323453940|gb|EGB09811.1| hypothetical protein AURANDRAFT_24596 [Aureococcus anophagefferens] Length = 700 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 248/591 (41%), Positives = 360/591 (60%), Gaps = 11/591 (1%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F M+ + P+GDQPAAI L+ + E+ +L G TG+GKTF +A IE + +P +V+A Sbjct: 3 FSMRAPFPPAGDQPAAIDSLVGRLGRGERRVVLKGATGTGKTFVLAHAIEQLDKPTLVLA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK+LAAQLYSE + FFP AV++FVS++DYY+PE+Y +DTY EK S+ N++ID +RH Sbjct: 63 PNKVLAAQLYSELREFFPDAAVKFFVSHFDYYRPESYKLASDTYSEKRSATNDRIDALRH 122 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKR 319 ATRSL ER D IVV++VSCIYG+G E Y + + G S + EL ++++ +Y Sbjct: 123 DATRSLNERRDTIVVATVSCIYGLGMPEEYLSSALLVHPGQSWTGRSELEAAMLALRYGA 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHL-EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 G RG F D + + E ++S+ D + + R+V+ Sbjct: 183 D--GADRGGFAWTDDGAALSVGLVTEPATLKISVEAGDDALLVSDVSIVADDARSVDEYV 240 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 +Y SHYV + + + EEL L GR EA+RLEQR+ D++ + G Sbjct: 241 LYPASHYVATAEEIERVAQAVLEELDDDLAAFRAAGRFREARRLEQRVLADVDDMRRRGF 300 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATL 497 C +ENY+R+++ R GE P TL ++ P+D LL VDE+HV +PQ+ GM+ GD RK +L Sbjct: 301 CPGMENYARHVSRRAAGEAPATLVDFFPDDDWLLVVDEAHVAVPQLRGMHAGDRARKTSL 360 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVD 556 E GFRL S +DNRPL E+ P + +ATP + + C + I+RPTG+VD Sbjct: 361 VENGFRLKSALDNRPLTDAEFWAKVPQCVFATATPNADVFDMCGDDAVTSLIVRPTGVVD 420 Query: 557 PPVEIRSARTQ--VED-VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 P V + A +ED + + AA G R L+T LTK AE + + L E + Y+H Sbjct: 421 PVVSVVDAAAAGGLEDHLLARVAAAAAAGDRALVTTLTKASAEGIADLLTENGVAATYLH 480 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S + + +R++ +R L+ G+ LVG NLLREGLD+P LVA++ A+K+GFLRS TSLIQ Sbjct: 481 SGLDSGKRLDALRRLKAGELQALVGCNLLREGLDLPMVSLVAVVGAEKQGFLRSATSLIQ 540 Query: 674 TIGRAARNVNSKVILYAD--TITKSIQLAIDETTRRREKQLEHNKKHNINP 722 TIGRAAR+V+ +V+LY D T++ +++ AIDET RR QL+HN +H++ P Sbjct: 541 TIGRAARHVDGRVLLYTDDGTVSDAMREAIDETNYRRAVQLDHNARHDVVP 591 >gi|257081024|ref|ZP_05575385.1| excinuclease ABC [Enterococcus faecalis E1Sol] gi|256989054|gb|EEU76356.1| excinuclease ABC [Enterococcus faecalis E1Sol] Length = 411 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/411 (52%), Positives = 290/411 (70%), Gaps = 1/411 (0%) Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445 +T + A+ I+EEL+ RL L E +LLEAQRLEQR YD+EM+ G IENY Sbjct: 1 MTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTSGIENY 60 Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505 SR++ GR GEPP TL ++ P+D LL +DESHVT+PQI GMY GD RK L +YGFRLP Sbjct: 61 SRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLP 120 Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565 S +DNRPLR EE+ + VSATPG +E+EQ + +V+QIIRPTGL+DP VEIR Sbjct: 121 SALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVEIRPIM 179 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 Q++D+ EI+ ++ R+ +T LTK+MAEDLT+Y E ++V+Y+HS++KTLER EII Sbjct: 180 GQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLERTEII 239 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 RDLRLG+FD+L+GINLLREG+D+PE L+AILDADKEGFLRS+ SL+QT+GRAARN K Sbjct: 240 RDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGK 299 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745 VI+YAD IT S+Q A+DET RRR Q +N++H I P+++ ++I ++I D T Sbjct: 300 VIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETV 359 Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + +D LS+++ L L ++M AA L+FE AA +RD I LK++ Sbjct: 360 VQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 410 >gi|146318678|ref|YP_001198390.1| helicase subunit of the DNA excision repair complex [Streptococcus suis 05ZYH33] gi|145689484|gb|ABP89990.1| Helicase subunit of the DNA excision repair complex [Streptococcus suis 05ZYH33] Length = 403 Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/390 (54%), Positives = 285/390 (73%), Gaps = 12/390 (3%) Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 E EG+LLEAQRL+QR YD+EML G +ENYSR++ GR+ GEPP TL ++ PED Sbjct: 21 FEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPEDY 80 Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 L+ +DESH+T+ QI GMY GD RK L YGFRLPS +DNRPLR EE+ + VS Sbjct: 81 LIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVS 140 Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 ATPG +E+EQ + +VEQIIRPTGL+DP VE+R Q++D+ EIN ++G R +T Sbjct: 141 ATPGDYEMEQTE-TVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITT 199 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 LTK+MAEDLT+YL E ++V+YMHS++KTLER EIIRDLRLG FDVL+GINLLREG+D+P Sbjct: 200 LTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVP 259 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 E LVAILDADKEGFLR++ LIQTIGRAARN VI+YAD +T+S++ A++ET RRR+ Sbjct: 260 EVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMRKAMEETARRRQ 319 Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL----SLSKKKGKAHLK 765 Q+ +N++H I PQ++K++I ++I + T ++ D +++ +L+K + KA +K Sbjct: 320 IQMAYNEEHGIIPQTIKKEIRDLI-------SVTKAVTQDKEEVVDFNALNKDERKAMIK 372 Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L QM AA+ L+FE AA+IRD + LK+ Sbjct: 373 KLEGQMQEAAEVLDFELAAQIRDMVIELKN 402 >gi|256045131|ref|ZP_05448032.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|265991567|ref|ZP_06104124.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|263002351|gb|EEZ14926.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1] Length = 393 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/359 (57%), Positives = 267/359 (74%), Gaps = 20/359 (5%) Query: 42 VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93 +AD + I EA K R KN + I +R AS+ G S + ++++T Sbjct: 36 IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95 Query: 94 -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142 +S T +VQALA LIQS NPL K+G++WTPHR I + Sbjct: 96 GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154 Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M+T + PSGDQP AI L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE QRPA+++APN Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214 Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M ++KIGD ++Q++LL+ LV QQYKRQDI Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK +++++KIYA Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYA 393 >gi|254226407|ref|ZP_04919995.1| excinuclease ABC subunit B [Vibrio cholerae V51] gi|125621096|gb|EAZ49442.1| excinuclease ABC subunit B [Vibrio cholerae V51] Length = 365 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/361 (55%), Positives = 263/361 (72%), Gaps = 1/361 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +DY P+GDQP AI QLL+G+ + Q LLGVTGSGKTFT+A VI QRP I++A Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N I++MR Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D ++V+SVS IYG+G +SY +M++ L+ GD + Q+++L L + QY R Sbjct: 125 SATKALLERKDVVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379 D+ RG FRV G+ I+IFP+ + A RV MF +++E IS F PLTG + R++ I Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVIMSRDLARFTI 244 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 Y +HYVTPR + A++ IK EL++R L +LLE QR+ QR +D+EM+ G C Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 IENYSRYL+GR GEPPPTLF+Y+P D LL +DESHVT+PQI M++GD RK TL E Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364 Query: 500 Y 500 + Sbjct: 365 F 365 >gi|258545354|ref|ZP_05705588.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826] gi|258519387|gb|EEV88246.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826] Length = 349 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/345 (57%), Positives = 253/345 (73%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ ++Y PSGDQP AIAQLL+G+ Q LLGVTGSGKTFTMA +I QRPA+++A Sbjct: 5 FQLVSNYQPSGDQPTAIAQLLEGLEDGLAKQTLLGVTGSGKTFTMANIIARAQRPALILA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR Sbjct: 65 PNKTLAAQLYGEMREFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D IVV+SVS IYG+G Y QM + L G++++ ++ S L + QY R Sbjct: 125 SATKAILERRDTIVVASVSSIYGLGDPSQYRQMRLHLSRGETIDPHDVFSHLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI ++RGTFRV GD I+I P+ + A R+ +F + IE I F PLTG+ V I IY Sbjct: 185 DIQLLRGTFRVKGDVIDIMPAESDWYAVRLELFDDTIENIRYFDPLTGEMHEAVPRITIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HY TPR T+ ++ IK EL+ R+ L + +L+EAQRLEQR +DLEM+ G C Sbjct: 245 PKTHYATPRATVLNTIEQIKAELRERVAALTAQNKLVEAQRLEQRTRFDLEMMVELGYCS 304 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485 IENYSRYL+GR GEPPPTL +Y+P D+LL +DESHVTIPQ++G Sbjct: 305 GIENYSRYLSGREAGEPPPTLHDYLPPDALLMIDESHVTIPQLNG 349 >gi|256027142|ref|ZP_05440976.1| excinuclease ABC subunit B [Fusobacterium sp. D11] Length = 387 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/382 (54%), Positives = 276/382 (72%), Gaps = 14/382 (3%) Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 +LLEAQRL+QR YDLEM+ G C+ IENYSRYL G+NPGE P TLFEY P+D LLF+D Sbjct: 4 KLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFID 63 Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 ESH+T+PQI GMY GD RK +L E GFRL + +DNRPLRFEE+ T+ +SATPG Sbjct: 64 ESHITVPQIRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGD 123 Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594 +ELE I EQ+IRPTG+VDP +EIR + QV+D+ DEI A + R+L+T LTK++ Sbjct: 124 FELEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKI 183 Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AE+LTEY E ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE LV Sbjct: 184 AEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLV 243 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 AI++ADKEGFLRS+ SL+QTIGRAARNV +VILYAD +T S++ AI ET RRR+ Q E+ Sbjct: 244 AIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEY 303 Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--KGKAHLK----SLR 768 N ++I+P+S+ ++I ED + I+ ++ +KK + KA ++ L Sbjct: 304 NAYNHIDPKSIVKEIA--------EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLE 355 Query: 769 KQMHLAADNLNFEEAARIRDEI 790 K++ + L+FE+A +RDE+ Sbjct: 356 KKIKKLVEELDFEQAIILRDEM 377 >gi|289765122|ref|ZP_06524500.1| excinuclease ABC subunit B [Fusobacterium sp. D11] gi|289716677|gb|EFD80689.1| excinuclease ABC subunit B [Fusobacterium sp. D11] Length = 389 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/382 (54%), Positives = 276/382 (72%), Gaps = 14/382 (3%) Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 +LLEAQRL+QR YDLEM+ G C+ IENYSRYL G+NPGE P TLFEY P+D LLF+D Sbjct: 6 KLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFID 65 Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 ESH+T+PQI GMY GD RK +L E GFRL + +DNRPLRFEE+ T+ +SATPG Sbjct: 66 ESHITVPQIRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGD 125 Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594 +ELE I EQ+IRPTG+VDP +EIR + QV+D+ DEI A + R+L+T LTK++ Sbjct: 126 FELEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKI 185 Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AE+LTEY E ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE LV Sbjct: 186 AEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLV 245 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 AI++ADKEGFLRS+ SL+QTIGRAARNV +VILYAD +T S++ AI ET RRR+ Q E+ Sbjct: 246 AIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEY 305 Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--KGKAHLK----SLR 768 N ++I+P+S+ ++I ED + I+ ++ +KK + KA ++ L Sbjct: 306 NAYNHIDPKSIVKEIA--------EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLE 357 Query: 769 KQMHLAADNLNFEEAARIRDEI 790 K++ + L+FE+A +RDE+ Sbjct: 358 KKIKKLVEELDFEQAIILRDEM 379 >gi|218262779|ref|ZP_03477137.1| hypothetical protein PRABACTJOHN_02816 [Parabacteroides johnsonii DSM 18315] gi|218223139|gb|EEC95789.1| hypothetical protein PRABACTJOHN_02816 [Parabacteroides johnsonii DSM 18315] Length = 393 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/391 (50%), Positives = 268/391 (68%), Gaps = 3/391 (0%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AIA L GI S Q LLGVTGSGKTFT+A VI+ +++P ++++ Sbjct: 3 FELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLILS 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ IN++ID++R Sbjct: 63 HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKLRL 122 Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 AT SLL R D IVVSSVSC+YG+ ++++ +V L+ G +++ +LL V Y Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALYVN 182 Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 I RG FRV GD+++IFP+ + A+R+ + ++++ IS F P TGQ+I + + Sbjct: 183 NKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQDEL 242 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 IY + +VT + +NTA+ I +L ++ L + G+ EA+RL +R+T+DLEM+ G Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRELG 302 Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 C IENYSRY GR GE P L +Y P+D LL VDESHVTIPQI MY GD+ RK L Sbjct: 303 HCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKKNL 362 Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528 EYGFRLP+ MDNRPL F+E+ L P I V Sbjct: 363 VEYGFRLPAAMDNRPLMFDEFESLTPLAIYV 393 >gi|308811182|ref|XP_003082899.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri] gi|116054777|emb|CAL56854.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri] Length = 1294 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 238/610 (39%), Positives = 350/610 (57%), Gaps = 41/610 (6%) Query: 147 YHPSGDQPAAI---AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203 + PSGDQP+AI A LL+ K L G TG+GKTF +A V+ M +PA+V+ PNK Sbjct: 13 FAPSGDQPSAIEKCAALLR--DGDRKYVCLRGATGTGKTFVVANVLAGMDKPALVVVPNK 70 Query: 204 ILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 LAAQ+ E + + + VE FVS++ Y PE+Y Y EK S+I+ +D +RH A Sbjct: 71 TLAAQVARELRAYLGETHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDADLDALRHRA 128 Query: 263 TRSLLERNDC-IVVSSVSCIYGIGSVESYSQMIVQLKIGD--SVEQKELLSSLVKQQ--Y 317 TR+L+E ++V+SVSC+YG+G Y + ++IG SV L S ++ Y Sbjct: 129 TRALVEPGKTPVIVASVSCLYGLGLPTDYVDAALTIEIGAAASVHGIRGLESKLRDDLLY 188 Query: 318 KR--QDIGIIRGTFRVCGD-------SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 +R + + RG F+ ++EI+P +LE A + + ND +S Sbjct: 189 ERVMPYMEVERGQFKTSPAPDDENCFTVEIWPPYLES-ALELRVRENDGTVVS-----CQ 242 Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + ++ ++ I+ HY+TP L A+ I+ EL+ + L EG +EA RLEQR Sbjct: 243 SRGCSMHSLTIWPRVHYITPAERLQRALVSIQNELEEQSKMLRGEGFAIEADRLEQRTNA 302 Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP---------EDSLLFVDESHVT 479 DL++L G C E+YSR+L G P EPP TL +Y D +L DESHV Sbjct: 303 DLQLLRELGWCPGAEHYSRHLRGARPEEPPVTLLDYFSYSADGSKQKRDWILVADESHVM 362 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG----SW 535 +PQ+ M+ GD RK +L G+RLPS +DNRPL EE+ P ++VSATPG SW Sbjct: 363 LPQLRAMHGGDRSRKLSLVAAGYRLPSALDNRPLMSEEFWERVPQALLVSATPGDIETSW 422 Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 + +V+ ++RP+G++DPPV I Q+E + ++ A+ G R L+ VLTK Sbjct: 423 VGGKSSDAMVDMVVRPSGVLDPPVHIIGKENQLEQLAQRVSEKAKLGERSLVCVLTKADT 482 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDL+ YL + +R ++HSE+ +R E + L+ G+ D +VG LLREGLD+P LVA Sbjct: 483 EDLSMYLNAQGVRADWVHSELTAPQRAEKLSKLQRGELDCIVGAQLLREGLDLPSVSLVA 542 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDAD GF+RS SL+Q GRAARN + + +L+AD++T +++ + E RRREKQ HN Sbjct: 543 ILDADVPGFMRSARSLMQMAGRAARNKHGECVLFADSVTGAMRDMMSEVDRRREKQHRHN 602 Query: 716 KKHNINPQSV 725 ++N+ P + Sbjct: 603 VENNLTPTTA 612 >gi|145356578|ref|XP_001422505.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582748|gb|ABP00822.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 690 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 241/607 (39%), Positives = 345/607 (56%), Gaps = 41/607 (6%) Query: 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205 + PSGDQP+AI + + + R+ K L G TG+GKT+ +A V+ A ++PA+V+ PNK L Sbjct: 77 FEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVVVPNKTL 136 Query: 206 AAQLYSEFKNFFPHNA-VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 AAQ+ E + + + VE FVS++ Y PE+Y Y EK S+I+ +D +RH ATR Sbjct: 137 AAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDALRHRATR 194 Query: 265 SLLERNDC-IVVSSVSCIYGIGSVESYSQMIVQLKIG--------DSVEQKELLSSLVKQ 315 +L+E +VV+SVSC+YG+G Y + ++IG D VE K L ++ Sbjct: 195 ALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRDDLLYER 254 Query: 316 QYKRQDIGIIRGTFRVCGD-------SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 DI RG ++ +I I+P +LE A V + G+D ++ Sbjct: 255 VMPYMDIE--RGQYKTTAAPDDDNCFTITIWPPYLES-ALDVRVRGDDGVVVA-----CE 306 Query: 369 QKIRNVE-TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427 + R V+ + I+ HY+TP L A+ IK EL + +L EG +EA RLEQR Sbjct: 307 ARGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEADRLEQRTN 366 Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP--------EDSLLFVDESHVT 479 DL +L G C E+YSR+L P EPP TL +Y D LL DESHV Sbjct: 367 ADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLVADESHVM 426 Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 +PQ+ M+ GD RK L G+RLPS +DNRPL EE+ P ++VSATPG E E Sbjct: 427 LPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATPGDIETEW 486 Query: 540 CQG----IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 G +V+ ++RP+G++DPPV + Q+E + +N A+ G R L+ VLTK Sbjct: 487 VGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVCVLTKADT 546 Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 EDL+ YL +R ++HSE+ +R E + L+ G+ D +VG LLREGLD+P LVA Sbjct: 547 EDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDLPSVSLVA 606 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 ILDAD GF+RS SL+Q GRAARN N + +L+AD+IT +++ ++E RRR KQ +HN Sbjct: 607 ILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRRVKQHKHN 666 Query: 716 KKHNINP 722 +N+ P Sbjct: 667 VDNNLVP 673 >gi|218515691|ref|ZP_03512531.1| excinuclease ABC subunit B [Rhizobium etli 8C-3] Length = 371 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/294 (65%), Positives = 235/294 (79%), Gaps = 5/294 (1%) Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 MDNRPLRFEEW+ +RP TI VSATPG+WE+EQ G+ EQ+IRPTGL+DPPVE+RSARTQ Sbjct: 1 MDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARTQ 60 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 V+DV EI A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRD Sbjct: 61 VDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRD 120 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVI Sbjct: 121 LRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVI 180 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 LYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK KI +++D + D +IS Sbjct: 181 LYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKAKISDILDSVYERDHVRADIS 240 Query: 748 -IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + + + L +AHL +L K M AA +L+FE+AAR+RDEIKRLK++ Sbjct: 241 GVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAA 294 >gi|196018038|ref|XP_002118717.1| hypothetical protein TRIADDRAFT_62734 [Trichoplax adhaerens] gi|190578390|gb|EDV18796.1| hypothetical protein TRIADDRAFT_62734 [Trichoplax adhaerens] Length = 300 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 178/300 (59%), Positives = 239/300 (79%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 MA +IE QRPA++MA NK LAAQLY+E KNFFP+NAVEYFVSYYDYYQPEAY+P++D+Y Sbjct: 1 MANIIEKCQRPALIMAHNKTLAAQLYNEMKNFFPNNAVEYFVSYYDYYQPEAYIPQSDSY 60 Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304 IEK++ INEQID +RHSATR+LLER D IVV+SVSCIYG+G+ E Y QM +L+ G + Sbjct: 61 IEKDAQINEQIDLLRHSATRALLERKDVIVVASVSCIYGLGAPELYLQMSFKLEKGKTYS 120 Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 ++E++ L++ QY+R D+ RG FRV G++I++FPSH +D AWR+S + +++E+I EF Sbjct: 121 RREVMQKLIELQYQRMDLDFSRGGFRVRGENIDVFPSHYQDRAWRISFWDDEVEKIYEFD 180 Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424 LTG+K +N+ I I+ANSHYVTPRPTL A+ I++EL R+ + + ++E+QR+ Q Sbjct: 181 YLTGEKTKNLNEIIIFANSHYVTPRPTLEQAVNLIQDELSERVEKFKLGNMVVESQRIAQ 240 Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484 R +D+EM+ T SC+ IENYSRYL+GR GEPPPTLFEY+P+D+LLFVDESHVT+PQI Sbjct: 241 RTNFDIEMIMETSSCKGIENYSRYLSGRKEGEPPPTLFEYLPKDALLFVDESHVTVPQIG 300 >gi|313632009|gb|EFR99124.1| UvrABC system protein B [Listeria seeligeri FSL N1-067] Length = 364 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/366 (54%), Positives = 264/366 (72%), Gaps = 5/366 (1%) Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 EM+E G C IENYSR+L+ R G P TL +Y P+D + +DESHVT+PQI GM+ GD Sbjct: 1 EMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGD 60 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 RK L ++GFRLPS +DNRPLR EE+ + +SATPG +ELE+ +I EQIIR Sbjct: 61 QARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIR 119 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 PTGL+DP VEIR + Q++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+ Sbjct: 120 PTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQ 179 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+HSEVKTLERIEIIRDLRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ S Sbjct: 180 YLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERS 239 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 LIQT+GRAARN N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P ++K++I Sbjct: 240 LIQTMGRAARNENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPMTIKKEIR 299 Query: 731 EVIDPILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789 +I AA +I LS +SKK+ ++ + +M AA L+FE AA +RD Sbjct: 300 GIIAAT---SAADEREAIKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDA 356 Query: 790 IKRLKS 795 + +K+ Sbjct: 357 LLEIKA 362 >gi|168069736|ref|XP_001786560.1| predicted protein [Physcomitrella patens subsp. patens] gi|162661005|gb|EDQ48628.1| predicted protein [Physcomitrella patens subsp. patens] Length = 804 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 240/322 (74%), Gaps = 1/322 (0%) Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 +G+LLEAQRLEQR YD+EM++ G C IENYS LT R G P TL +Y P+D L+ Sbjct: 22 QGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLIV 81 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 VDESHVT+PQI MY GD RK L E+GFRLPS +DNRPL FEE+ I VSATP Sbjct: 82 VDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLTFEEFESKVNQIIYVSATP 141 Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 G +E+E C +VEQIIRPTGL+DP +E+R Q++D+ EI + R+L+T LTK Sbjct: 142 GPYEIEHCD-TMVEQIIRPTGLLDPVIEVRPTEGQIDDLIGEIRERIDRDERVLVTTLTK 200 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 +MAEDLT+YL E I+VRY+HS++KTLER+ I+RDLRLG F VL+GINLLREGLD+PE Sbjct: 201 KMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFHVLIGINLLREGLDLPEVS 260 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 LVAILDADKEGFLRS+ SLIQTIGRAARN V++Y D IT+S+ AI ET RRR Q+ Sbjct: 261 LVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKITESMDKAIKETQRRRTMQI 320 Query: 713 EHNKKHNINPQSVKEKIMEVID 734 +N++H I PQ++++K+ +VI+ Sbjct: 321 AYNEQHGITPQTIRKKVRDVIE 342 >gi|12620111|gb|AAG60567.1|AF250772_1 excision nuclease subunit B [uncultured bacterium pCosHE1] Length = 333 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/332 (56%), Positives = 234/332 (70%) Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 QY R D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTG ++ Sbjct: 2 QYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESVIQ 61 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 IY +HYVTPR + AM+ IKEEL R L +LLE QRL QR +DLEM+ Sbjct: 62 RYTIYPKTHYVTPRERIVQAMEEIKEELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNE 121 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 G C IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD RK Sbjct: 122 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKE 181 Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 TL EYGFRLPS +DNRP++FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+ Sbjct: 182 TLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLL 241 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP +E+R TQV+D+ EI + R+L+T LTKRM EDLTEYL E + RY HS+ Sbjct: 242 DPVIEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMGEDLTEYLEEHGEKGRYFHSD 301 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 + T+ER+EIIRDLRLG L GINLLR GLD Sbjct: 302 IDTVERMEIIRDLRLGDLTCLGGINLLRXGLD 333 >gi|255523394|ref|ZP_05390363.1| type III restriction protein res subunit [Clostridium carboxidivorans P7] gi|255512852|gb|EET89123.1| type III restriction protein res subunit [Clostridium carboxidivorans P7] Length = 337 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/332 (53%), Positives = 240/332 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI ++K I+ +EK Q LLGVTGSGKTFTMA +IE +++P +V+A Sbjct: 4 FKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH Sbjct: 64 HNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLER D +VV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L LV+ QY+R Sbjct: 124 SATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQYERN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +I +RGTFRV GD ++IFP+ A R+ FG++I+ I EF LTG+ I + + I+ Sbjct: 184 EINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHVSIF 243 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+ T R L A+K I+ EL+ R+ EL + +LLEAQRL+QR +D+EM+ G C Sbjct: 244 PASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVGYCS 303 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 IENYSR L GR G PP TL +Y PED F Sbjct: 304 GIENYSRILDGRAKGTPPQTLIDYFPEDYFTF 335 >gi|291533169|emb|CBL06282.1| Helicase subunit of the DNA excision repair complex [Megamonas hypermegale ART12/1] Length = 346 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/328 (54%), Positives = 237/328 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ + P+GDQP AI L +GI + + Q+LLG TG+GKTFT+AK+IE +Q+P +V+A Sbjct: 18 FKVEAPFEPTGDQPQAIKALAQGIQNGQTSQVLLGATGTGKTFTIAKLIEKVQKPTLVIA 77 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN++ID++RH Sbjct: 78 HNKTLAAQLASEFKEFFPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDEIDKLRH 137 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SL ER D I+V+SVSCIYG+GS E Y +++ ++ G + ++L LV QY+R Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPEDYYDLVLSVREGQEYPRDDILRKLVSIQYERN 197 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD IEIFP+ D A R+ +FG++++ I E LTG+ + I IY Sbjct: 198 DINFDRGKFRVRGDVIEIFPAGYSDRAIRIELFGDEVDRILEVDTLTGEVYGQRKHILIY 257 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SHYVT + + A+ I+EEL+ +L LE + +LLEAQRL+QR YDLE +E G C Sbjct: 258 PASHYVTSKEHMKEAIDSIQEELQQQLKILEDDNKLLEAQRLKQRTNYDLETMEEMGYCS 317 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPED 468 IENYSR+LTGR GE P TL +Y P+D Sbjct: 318 GIENYSRHLTGRKAGEAPYTLLDYFPDD 345 >gi|269968277|ref|ZP_06182302.1| putative UvrABC system protein B [Vibrio alginolyticus 40B] gi|269827103|gb|EEZ81412.1| putative UvrABC system protein B [Vibrio alginolyticus 40B] Length = 334 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 180/331 (54%), Positives = 244/331 (73%), Gaps = 16/331 (4%) Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 +T+PQI MY+GD RK TL E+GFRLPS +DNRPL+FEE+ L P TI VSATPG++EL Sbjct: 1 MTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYEL 60 Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597 E+ G + +Q++RPTGL+DP +E+R TQV+D+ EI + A + R+L+T LTKRMAED Sbjct: 61 EKSAGDVADQVVRPTGLLDPELEVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAED 120 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTEYL+E +++VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAIL Sbjct: 121 LTEYLHEHDVKVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 180 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717 DADKEGFLRS+ SLIQTIGRAARN+ K ILYAD IT S++ A+DET RRREKQ +N++ Sbjct: 181 DADKEGFLRSERSLIQTIGRAARNIEGKAILYADRITNSMKKAMDETNRRREKQEAYNEE 240 Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-------------KKGKAHL 764 I+PQ++K I ++++ L D + + +Q+ LSK ++ + + Sbjct: 241 MGISPQALKRNIKDIME---LGDITKSKRQRNTKQVPLSKVAEPSQTYEALSPQQLEKEI 297 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L M+ A +L FE AA+ RDEI++L++ Sbjct: 298 SRLEAAMYQHAQDLEFELAAQKRDEIEKLRA 328 >gi|298708856|emb|CBJ30814.1| excinuclease ABC subunit B [Ectocarpus siliculosus] Length = 1015 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 213/502 (42%), Positives = 289/502 (57%), Gaps = 63/502 (12%) Query: 358 EEISEFYPLTGQK--IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +++ PL G + + +V+ IY H+V R + M I EE++ R +L G+ Sbjct: 505 QDLGHDKPLVGSERALDDVDAHVIYPAKHHVVGRGEMEDVMSKISEEMEERCSQLGLGGK 564 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVD 474 +LEA+RL QR DL +L G+C+ +ENYSR+L GR PG+PP TL +Y PE+ LL VD Sbjct: 565 ILEAERLRQRTENDLLLLGAVGTCKGVENYSRHLAGRAPGDPPETLVDYFPENEWLLIVD 624 Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 ESHV+ PQ+ M+ GD RK L E+GFRLPS +DNRPL+ +E+ TI VSATPG Sbjct: 625 ESHVSAPQLGAMWGGDQARKKKLVEHGFRLPSALDNRPLKADEFWSKVDKTIFVSATPGK 684 Query: 535 WELEQCQ--------------GIIVEQ--IIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578 +ELE G +V+ +IRPTG+ DPPV+IR + QV D+ E Sbjct: 685 FELELATLGAGKSGGMGWDEIGDLVDAQAVIRPTGITDPPVDIRPSEGQVSDMVQECKTR 744 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +G R+L+T LTK+MAEDL+ +L E+ + Y+HS VK ++R+E++R LR G+ DV+VG Sbjct: 745 GGRGERVLVTALTKQMAEDLSAFLMEQGVPTAYLHSGVKPMQRLELLRQLRSGEIDVIVG 804 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 +NLLREGL++PE LV ILDAD EGFLRS T+L+QTIGRA R+ + +LYAD IT S++ Sbjct: 805 VNLLREGLNLPEVSLVCILDADAEGFLRSDTALLQTIGRATRHEAGRAVLYADRITPSMK 864 Query: 699 LAIDETTRRREKQLEHNKKHNINPQ-----SVKEKIMEVI--DPI--------------- 736 A+ ET RRRE Q HNK H I P SV + I++ I D + Sbjct: 865 RALAETDRRREIQTRHNKLHGITPSVAKAASVGDSILDSINGDAVHTQREGEGRDSSSDH 924 Query: 737 ---------------LLEDAATTNISIDAQQLS--LSKKKGKAH-LKSLRKQ----MHLA 774 LL D A N A Q L+ +G H L L +Q M LA Sbjct: 925 VASWANHSLLPDQVQLLYDLAAQNGKGSAHQQKTLLTPSEGTTHALMRLAEQASTKMSLA 984 Query: 775 ADNLNFEEAARIRDEIKRLKSS 796 A +F+EAA RD L S+ Sbjct: 985 ATKTDFKEAALWRDRRDALLST 1006 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 88/174 (50%), Positives = 123/174 (70%), Gaps = 1/174 (0%) Query: 128 SWSINNHSKDI-TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186 +W + + + F + + + P+GDQP AI L +GI ++ Q LLG TG+GKTF +A Sbjct: 209 AWLVEERERGVGAVFDLNSPFEPAGDQPEAIKALCQGIEEGKRHQTLLGATGTGKTFIIA 268 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246 VI+ + P +V+APNK+LA+QL +E + FP+NAVE+FVSYYDYY PEA+ +DTYI+ Sbjct: 269 NVIQEARLPTLVLAPNKVLASQLTNELRALFPNNAVEFFVSYYDYYLPEAFNSASDTYID 328 Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 K IN+ IDRMRHSAT+SLLER D IVV+SVSCIYG+G Y + +++ +G Sbjct: 329 KVVQINDDIDRMRHSATQSLLERRDVIVVASVSCIYGLGMPSKYLEASIRIVVG 382 >gi|240850158|ref|YP_002971551.1| excinuclease ABC subunit B [Bartonella grahamii as4aup] gi|240267281|gb|ACS50869.1| excinuclease ABC subunit B [Bartonella grahamii as4aup] Length = 376 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 177/279 (63%), Positives = 223/279 (79%), Gaps = 2/279 (0%) Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576 EW+ +RP TI VSATPG WE+EQ G EQIIRPTGL+DPP E+R A QV+DV +EI Sbjct: 4 EWDAMRPQTIAVSATPGRWEIEQSHGTFAEQIIRPTGLIDPPTEVRPASNQVDDVVNEIR 63 Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 Q+G R L+TVLTKRMAEDLTEYL+E++IRVRYMHS++ TLERIEI+RDLRLG FDVL Sbjct: 64 KTIQKGYRTLVTVLTKRMAEDLTEYLHEQDIRVRYMHSDIDTLERIEILRDLRLGTFDVL 123 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 +GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT S Sbjct: 124 IGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGS 183 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-QQLSL 755 I+ A+ ET RRR+KQ+ +N++H+I P+S+K+ I ++++ E+ I+ D ++ ++ Sbjct: 184 IERALQETQRRRQKQIAYNEEHHITPKSIKKNIGDILNS-GYENNHIRTITPDVIEKKNM 242 Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +H+K L K MH AA +LNFEEAAR+RDEIK+L+ Sbjct: 243 VGNNLASHIKHLEKLMHEAAADLNFEEAARLRDEIKQLQ 281 >gi|258545353|ref|ZP_05705587.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826] gi|258519456|gb|EEV88315.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826] Length = 319 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 180/317 (56%), Positives = 227/317 (71%), Gaps = 2/317 (0%) Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543 +GMYRGD RK TL +YGFRLPS +DNRPLRFEE+ L P TI +SATPG +E E G Sbjct: 1 NGMYRGDRSRKETLVDYGFRLPSALDNRPLRFEEFEALAPQTIYISATPGDYEREHS-GQ 59 Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 VEQ++RPTGL+DP VEIR +QVED+ EI R+L+T LTK+MAEDLT+YL Sbjct: 60 TVEQVVRPTGLLDPEVEIRPVDSQVEDILGEIRERVAADERVLITTLTKKMAEDLTDYLM 119 Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 E ++RVRY+HS+V T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE LVAI DADKEG Sbjct: 120 EHDVRVRYIHSDVGTVERMEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAIFDADKEG 179 Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 FLR + +LIQTIGRAARN K ILYA IT+S+Q A+DET RRREKQ ++N+ H I PQ Sbjct: 180 FLRGERALIQTIGRAARNARGKAILYAAHITRSMQAAMDETARRREKQQQYNEAHGITPQ 239 Query: 724 SVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782 ++++KI +V++ + A + + +++ K +K L KQM A NL FE Sbjct: 240 TIRKKITDVMEGAHVAIKAKKAHREREREEMPADPKAAAKLIKQLEKQMLEHAKNLEFEA 299 Query: 783 AARIRDEIKRLKSSPYF 799 AA +RD IK ++ S Y Sbjct: 300 AAALRDRIKHIEQSAYI 316 >gi|224369719|ref|YP_002603883.1| UvrB3 [Desulfobacterium autotrophicum HRM2] gi|223692436|gb|ACN15719.1| UvrB3 [Desulfobacterium autotrophicum HRM2] Length = 330 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 173/321 (53%), Positives = 224/321 (69%) Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243 TMA +I M++P +++APNK LAAQLY+E K FP N VEYFVSYY YYQPEAY+P +DT Sbjct: 2 TMANIISQMEKPNLIIAPNKTLAAQLYNELKMLFPDNCVEYFVSYYAYYQPEAYIPSSDT 61 Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 YI+K+SSINE ID+MRHSATRS+L R D IVV+SVSCIYG+G+ E Y + V L + Sbjct: 62 YIQKDSSINELIDKMRHSATRSVLARKDVIVVASVSCIYGLGAPEEYLDLRVTLDRDMEI 121 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++++ V QY R D+ RGTFRV GD +EIFP++ E+ R+ FG+ IEEISE Sbjct: 122 SREDVNRKFVDIQYTRNDVDFHRGTFRVRGDRLEIFPAYEENKTIRIDFFGDTIEEISEI 181 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 L G I+ + + IY SHYVT + T A++ I ELK RL L L+EAQRLE Sbjct: 182 DALQGTVIKQFDQMAIYPASHYVTNKKTQKQAVERIVIELKERLAFLNDHNLLVEAQRLE 241 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 + YDLE+LE G C IENYSR+LTGR PG+PPPTL +YI +D LLF DE+H+++ Q+ Sbjct: 242 EHTRYDLEILEEIGYCNGIENYSRHLTGRAPGQPPPTLLDYIDQDFLLFFDENHISVSQL 301 Query: 484 SGMYRGDFHRKATLAEYGFRL 504 +Y+ D RK TL ++GFRL Sbjct: 302 GAIYKADRSRKETLVKHGFRL 322 >gi|88194538|ref|YP_499333.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202096|gb|ABD29906.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 343 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 174/330 (52%), Positives = 237/330 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A Sbjct: 7 FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH Sbjct: 67 HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER+D I+++SVSCIYG+G+ E Y ++V +++G +++ ELL LV QY R Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RGTFRV GD +EIFP+ E++ RV FG++I+ I E LTG+ ++ E I+ Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 SH+VT L A++ I++EL+ RL EL E +LLEAQRLEQR YDLEM+ G C Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 IENYS +LT R G P TL +Y +D L Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWL 336 >gi|88194540|ref|YP_499336.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202098|gb|ABD29908.1| excinuclease ABC subunit B, putative [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 324 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 173/327 (52%), Positives = 235/327 (71%), Gaps = 8/327 (2%) Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531 +DESHVT+PQ+ GMY GD RK L ++GFRLPS +DNRPL+FEE+ + VSAT Sbjct: 1 MIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSAT 60 Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 PG +E+E + VEQIIRPTGL+DP +E+R Q++D+ EI ++ R+L+T LT Sbjct: 61 PGPYEIEHTDKM-VEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLT 119 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K+M+EDLT Y+ E I+V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE Sbjct: 120 KKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEV 179 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711 LV ILDADKEGFLRS SLIQTIGRAARN +VI+YAD +T S++ AIDET RRRE Q Sbjct: 180 SLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQ 239 Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLR 768 ++HN+KH I P+++ +KI ++I + D AQ + ++KK+ + + ++ Sbjct: 240 MKHNEKHGITPKTINKKIHDLISATVENDENNDK----AQTVIPKKMTKKERQKTIDNIE 295 Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKS 795 K+M AA +L+FE+A +RD + LK+ Sbjct: 296 KEMKQAAKDLDFEKATELRDMLFELKA 322 >gi|3043868|gb|AAC14603.1| extracellular protein Exp5 precursor [Lactococcus lactis subsp. cremoris MG1363] Length = 455 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 165/273 (60%), Positives = 205/273 (75%), Gaps = 1/273 (0%) Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478 AQRLEQR YD+EML G C +ENYSR++ GR GEPP TL ++ P+D ++ +DESH+ Sbjct: 176 AQRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHM 235 Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538 T+ Q+ GMY GD RK L YGFRLPS +DNRPL+ EE+ + VSATPG +E+E Sbjct: 236 TMGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEME 295 Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q IVEQIIRPTGL+DP VE+R Q++D+ EI+ A++ R+ +T LTK+M+EDL Sbjct: 296 QTD-TIVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDL 354 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 T Y E I+V+YMHS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE LVAILD Sbjct: 355 TAYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILD 414 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691 ADKEGFLR++ LIQTIGRAARN VILY+D Sbjct: 415 ADKEGFLRNERGLIQTIGRAARNSEGHVILYSD 447 >gi|218515278|ref|ZP_03512118.1| excinuclease ABC subunit B [Rhizobium etli 8C-3] Length = 341 Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 171/306 (55%), Positives = 220/306 (71%), Gaps = 26/306 (8%) Query: 33 KQLEVDKTMVA-DAMRRIRSEAGKHRK---NAAKR----MLIHQREN------------- 71 KQLE D ++ R I S+AGKHRK NAA++ + ++++ Sbjct: 36 KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95 Query: 72 ----TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127 T + + + +S + +IS +T +V+AL++LI+S NPL KNGKIWTPHR Sbjct: 96 SDPKTRAAAGLNPVAGLDISLEDAGKISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155 Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187 + I M++DY P+GDQP AI L++G+ + ++ Q+LLGVTGSGKTFTMAK Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214 Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274 Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M Q+ +GD ++Q++ Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334 Query: 308 LLSSLV 313 LL+ LV Sbjct: 335 LLADLV 340 >gi|237751911|ref|ZP_04582391.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430] gi|229376670|gb|EEO26761.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430] Length = 325 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 177/329 (53%), Positives = 227/329 (68%), Gaps = 8/329 (2%) Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 +L VDESHV++PQ GMY GD RK L EYGFRLPS +DNRPL++EE+ P + VS Sbjct: 1 MLIVDESHVSLPQFGGMYAGDRSRKEVLVEYGFRLPSALDNRPLKYEEFIIKAPHFLFVS 60 Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 ATP EL+ Q EQ+IRPTGL+DP E+ QV +YD +G R+L+T Sbjct: 61 ATPAQKELDLSQEHTAEQLIRPTGLLDPLYEVLEVDKQVTILYDRAKEVIARGERVLVTA 120 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 LTK+MAE+LT+Y + +RVRYMHS++ +ER +IIR LR G+FD+LVGINLLREGLD+P Sbjct: 121 LTKKMAEELTKYYNDLGLRVRYMHSDIDAIERNQIIRALRAGEFDILVGINLLREGLDLP 180 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 E LVAILDADKEGFLRS+TSLIQT+GRAARNVN +V+L+A IT S+Q A++ T RR Sbjct: 181 EVSLVAILDADKEGFLRSETSLIQTMGRAARNVNGRVLLFASKITPSMQKAMEITDYRRA 240 Query: 710 KQLEHNKKHNINPQSVKEKIMEVI---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766 KQ +NK HNI PQSV K+ E + D +L + A A + + K + + +K Sbjct: 241 KQEAYNKAHNIIPQSVSRKLDEDLKNQDLGMLYERAKK-----ASKEKMPKSEREKLVKE 295 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKS 795 L KQM AA L FEEAAR+RDEI +L++ Sbjct: 296 LSKQMQEAAKKLEFEEAARLRDEIAKLRA 324 >gi|237751910|ref|ZP_04582390.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430] gi|229376669|gb|EEO26760.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430] Length = 324 Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 152/323 (47%), Positives = 222/323 (68%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + + PSGDQP AI L I + Q L+GVTGSGKTF+MA +I+ +Q P ++M Sbjct: 2 FALHSQFKPSGDQPEAIKTLSSFIKKGSQYQTLIGVTGSGKTFSMAHIIQELQMPTLIMT 61 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R Sbjct: 62 HNKTLAAQLYSEFQGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEGLERLRL 121 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT SLL +DC+VV+SVS YG+G+ + Y +MI + ++ QK LL LV YKR Sbjct: 122 SATTSLLAYDDCVVVASVSANYGLGNPKEYLEMIEKFEVAQDYHQKSLLLRLVDMGYKRN 181 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RG FRV G+ I+IFP++ E+ R+ FG+++E I+ + + ++ +E+ +Y Sbjct: 182 DNFFDRGDFRVNGEVIDIFPAYSEEEIVRLEFFGDELESITLLDSIEKKPLKKLESFVLY 241 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 A + ++ L A+K I+EEL +RL +++GR++E +RL+ R +DLEM++ TG C+ Sbjct: 242 AANPFIVGADRLKQAVKSIEEELHLRLKFFKEQGRMVEYERLKSRTEFDLEMIQATGICK 301 Query: 441 SIENYSRYLTGRNPGEPPPTLFE 463 IENY+R+LTG+ PGE P +L + Sbjct: 302 GIENYARHLTGKKPGETPYSLLD 324 >gi|289811492|ref|ZP_06542121.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 308 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 163/304 (53%), Positives = 212/304 (69%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ V IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 +HYVTPR + AM+ IK+EL R L +LLE QRL QR +DLEM+ G C Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304 Query: 441 SIEN 444 IEN Sbjct: 305 GIEN 308 >gi|255523395|ref|ZP_05390364.1| helicase domain protein [Clostridium carboxidivorans P7] gi|255512853|gb|EET89124.1| helicase domain protein [Clostridium carboxidivorans P7] Length = 313 Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 163/305 (53%), Positives = 216/305 (70%), Gaps = 6/305 (1%) Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MY GD RK +L EYGFRLPS DNRPL F E+ + VSATP ++ELE + Sbjct: 1 MYAGDRSRKESLVEYGFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTNV-A 59 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQIIRPTGL+DP +E++ + Q++D+Y I ++G RIL+T LTK+MAEDL++Y E Sbjct: 60 EQIIRPTGLLDPEIEVKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEM 119 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +I+ Y+HS + T++R+EIIRDLR G+FDVL+GINLLREGLDIPE LVAILDADKEGFL Sbjct: 120 DIKANYLHSGIDTIQRMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFL 179 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+ SLIQTIGRAARN SKVI+YAD IT S+ AI ET RRR+ Q+E+N+KHNI P+++ Sbjct: 180 RSERSLIQTIGRAARNSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTI 239 Query: 726 KEKIMEVIDP--ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 K++I EVI+ +L E+A ++ + + + + + K+M AA L FE A Sbjct: 240 KKEIREVIEATKVLEENAQYDSLE---EAMEANNENIDLLISKYEKEMKQAAKELQFELA 296 Query: 784 ARIRD 788 A +RD Sbjct: 297 ADLRD 301 >gi|239629187|ref|ZP_04672218.1| UvrABC system protein B [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239528546|gb|EEQ67547.1| UvrABC system protein B [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 320 Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 163/319 (51%), Positives = 220/319 (68%), Gaps = 8/319 (2%) Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-Q 541 + GMY GD RK L YGFRLPS +DNRPL+ E+ + VSATPG +EL++ + Sbjct: 1 MRGMYNGDRARKQMLVNYGFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPK 60 Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601 I EQIIRPTGL+DP +E+R Q++D+ EIN R+ +T LTK+MAEDLT+Y Sbjct: 61 DDIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDY 120 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L + I+VRY+HS++KTLER +IIRDLRLGKFDVL+GINLLREG+D+PE L+AILDADK Sbjct: 121 LKDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADK 180 Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721 EGFLR++ SLIQTIGRA+RN + KVI+YAD +T S++ AI+ET RRR Q + N++H+I Sbjct: 181 EGFLRAERSLIQTIGRASRNEHGKVIMYADKVTDSMKAAINETQRRRTIQEKFNEEHHIT 240 Query: 722 PQSVKEKIMEVIDPILLED-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776 P+++ + I I D A T +D + +S + K K + +L QM AA Sbjct: 241 PKTIIKPIRAAISSYEQSDDDKAEAKKTFAEVDYEDMSKADK--KELVANLHSQMQAAAK 298 Query: 777 NLNFEEAARIRDEIKRLKS 795 L+FE+AA +RD I L++ Sbjct: 299 KLDFEQAASLRDTILELQA 317 >gi|12407621|gb|AAG53595.1|AF248315_1 UvrB-like protein [uncultured bacterium pCosAS1] Length = 309 Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 158/294 (53%), Positives = 205/294 (69%) Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 +I+K++S+NE I++MR SAT++LLER D +VV+SVS IYG+G + Y +M++ L G + Sbjct: 6 FIQKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMII 65 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +Q+ +L L + QY R D RGTFRV G+ I+IFP+ +D A RV +F ++E +S F Sbjct: 66 DQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDFALRVELFDEEVERLSLF 125 Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 PLTG + +Y +HYVTPR + AM+ IK EL R L +LLE QR+ Sbjct: 126 DPLTGHVESIIPRFTVYPKTHYVTPRERIVQAMEDIKVELADRRKTLLDNNKLLEEQRIS 185 Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 QR +DLEM+ G C IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI Sbjct: 186 QRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQI 245 Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 GMYRGD RK TL EYGFRLPS +DNRP++FEE+ L P TI VSATPG++EL Sbjct: 246 GGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPXTIYVSATPGNYEL 299 >gi|301307457|ref|ZP_07213449.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1] gi|300837372|gb|EFK65132.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1] Length = 300 Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 157/293 (53%), Positives = 209/293 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + IY Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 +HYVTPR + AM+ IKEEL R L + +LLE QRL QR +DLEM+ Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 >gi|145629308|ref|ZP_01785107.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] gi|144978811|gb|EDJ88534.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] Length = 275 Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 149/269 (55%), Positives = 195/269 (72%) Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 K LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR SA Sbjct: 5 KTLAAQLYAEMKGFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSA 64 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 T+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R D Sbjct: 65 TKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQ 124 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 125 AFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYPK 184 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 +HYVTPR + A++ IK+EL R KE +LLE QR+ QR +D+EM+ G C I Sbjct: 185 THYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGI 244 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 ENYSRYL+GRN GEPPPTLF+Y+P D++ Sbjct: 245 ENYSRYLSGRNEGEPPPTLFDYMPSDAIF 273 >gi|291533170|emb|CBL06283.1| Helicase subunit of the DNA excision repair complex [Megamonas hypermegale ART12/1] Length = 242 Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 153/243 (62%), Positives = 191/243 (78%), Gaps = 1/243 (0%) Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MY GD RK +L + GFRLPS DNRPLRFEE+ I VSATP +EL Q + V Sbjct: 1 MYAGDRSRKESLVDNGFRLPSAFDNRPLRFEEFLDHINQIIYVSATPAPFELAQANQV-V 59 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 EQIIRPTGL+DP +EIR Q++D+ EI + ++ R+L+T LTK+MAE+LT+YL E Sbjct: 60 EQIIRPTGLLDPEIEIRPLEGQMDDLLGEIKIRTKKNERVLITTLTKKMAENLTDYLKEM 119 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 I+VRY+HS++ T+ER EIIRDLRLGKFDVLVGINLLREGLD+PE LVAILDADKEGFL Sbjct: 120 GIKVRYLHSDIATIERAEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 179 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+TSLIQTIGRAARN + KVI+YAD IT S+Q AIDET RRRE Q ++N++H+I P+++ Sbjct: 180 RSETSLIQTIGRAARNAHGKVIMYADRITDSMQKAIDETLRRREVQDKYNQEHHITPKTI 239 Query: 726 KEK 728 ++K Sbjct: 240 QKK 242 >gi|256027141|ref|ZP_05440975.1| excinuclease ABC subunit B [Fusobacterium sp. D11] Length = 293 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 142/287 (49%), Positives = 212/287 (73%), Gaps = 2/287 (0%) Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 F++ ++Y P+GDQP AI ++K I + K Q+LLGVTGSGKTFT+A VIE +QRP++++ Sbjct: 5 LFKIHSEYRPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLII 64 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+ TDTYIEK+SS+N++ID++R Sbjct: 65 APNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKLR 124 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 ++AT +L+ R D I+V+SVS IYG+GS ++Y +M + + + +KEL+ LV +Y R Sbjct: 125 NAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGISRKELIKRLVDLRYNR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378 D+ RG FR+ GD I+I+PS++ + +R+ +G+D+EEISE LTGQK+ +N+E I Sbjct: 185 NDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERIV 243 Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425 IY + Y+T + +K IK++LK+ + + E E +++ + ++E + Sbjct: 244 IYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKIIGSTKIEAK 290 >gi|171850941|emb|CAQ00033.1| putative uvrABC system protein B [Rhodococcus erythropolis] Length = 345 Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 163/337 (48%), Positives = 221/337 (65%), Gaps = 32/337 (9%) Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555 T + F LPS DNRPL +EE++ T+ +SATPG +EL Q G VEQ+IRPTGL+ Sbjct: 7 TWSSSDFGLPSATDNRPLTWEEFSQRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGLI 66 Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 DP V ++ + Q++D+ EI A++ R+L+T LTK+M+EDLT+YL E IRVRY+HS+ Sbjct: 67 DPEVIVKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSD 126 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + TL R+E++R LRLG++DVLVGINLLREGLD+PE LVAILDADKEGFLRS TSLIQTI Sbjct: 127 IDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTI 186 Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 GRAARNV+ +V +YAD IT S+ AI+ET RRREKQ+ +N+K ++PQ +++KI +++D Sbjct: 187 GRAARNVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILDQ 246 Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAH-----------------------------LKS 766 + E+A T S+D + +G+ +K Sbjct: 247 V-YEEAEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKE 305 Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803 L QM AA +L FE A R+RDEI LK +G+D Sbjct: 306 LTGQMMNAARDLQFELAGRLRDEISDLKKE--LRGMD 340 >gi|221090580|ref|XP_002154320.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata] Length = 228 Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 139/219 (63%), Positives = 179/219 (81%), Gaps = 3/219 (1%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 N+ SK+ F +++ + PSGDQP AI ++++G EK Q+LLGVTGSGKTFTMA VI+ Sbjct: 13 NSPSKE---FALESPFKPSGDQPQAIEEIVRGFQRGEKDQVLLGVTGSGKTFTMANVIQK 69 Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 +QRP+++MAPNKILAAQLYSE K FFP+N VEYFVSYYDYYQPEAYV R+DT+IEK +SI Sbjct: 70 LQRPSLIMAPNKILAAQLYSEMKEFFPNNCVEYFVSYYDYYQPEAYVARSDTFIEKTASI 129 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 NEQIDRMRHSATRS+LER+D IVV+SVSCIYGIG V +YS+M + LK+G S++++ L+ Sbjct: 130 NEQIDRMRHSATRSMLERHDVIVVASVSCIYGIGGVNTYSEMTIALKVGQSIDKQLLMKK 189 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 L++ QYKR DI RG+FR GD ++IFPSH E+ +WR+ Sbjct: 190 LIEIQYKRNDIDFSRGSFRSRGDVLDIFPSHFENRSWRL 228 >gi|146318679|ref|YP_001198391.1| helicase subunit of the DNA excision repair complex [Streptococcus suis 05ZYH33] gi|145689485|gb|ABP89991.1| Helicase subunit of the DNA excision repair complex [Streptococcus suis 05ZYH33] Length = 271 Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 139/260 (53%), Positives = 192/260 (73%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI L+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + YS +V L+ G + + +LL++LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNALVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E LTG+ + +V+ + I+ Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249 Query: 381 ANSHYVTPRPTLNTAMKYIK 400 +H+VT + T + I+ Sbjct: 250 PATHFVTNDDHMETVIAKIR 269 >gi|145641148|ref|ZP_01796729.1| excinuclease ABC subunit B [Haemophilus influenzae R3021] gi|145274309|gb|EDK14174.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21] Length = 276 Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 143/261 (54%), Positives = 190/261 (72%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ L + QY R Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D RGTFRV G+ I+IFP+ +D A R+ +F ++IE +S F PLTG V IY Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249 Query: 381 ANSHYVTPRPTLNTAMKYIKE 401 +HYVTPR + A++ IK+ Sbjct: 250 PKTHYVTPRERILDAIENIKK 270 >gi|241563357|ref|XP_002401670.1| hypothetical protein IscW_ISCW020751 [Ixodes scapularis] gi|215501862|gb|EEC11356.1| hypothetical protein IscW_ISCW020751 [Ixodes scapularis] Length = 227 Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 135/224 (60%), Positives = 169/224 (75%) Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438 ++ NSH+V P+ T+N+A+ I+EEL+ RL L+ + + LE QRL QR YDLEML TGS Sbjct: 2 VFGNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGS 61 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498 C+ +ENYSR+ TGRN G+PPPTLFEY+PED+LLFVDESHV++PQI MY GD RK L Sbjct: 62 CKGVENYSRFFTGRNAGKPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLV 121 Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558 E+GFRLPS +DNRPL+FEEW RP T+ VSATPG +ELE+ G +VE IIRPTGL+DP Sbjct: 122 EHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETDGTVVELIIRPTGLLDPE 181 Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 I+ A QVED+ EI +G R+L+T LTK+MAEDLT YL Sbjct: 182 CIIKPATNQVEDLISEIQTTISKGFRVLVTTLTKKMAEDLTAYL 225 >gi|153871608|ref|ZP_02000736.1| excinuclease ABC subunit B [Beggiatoa sp. PS] gi|152071925|gb|EDN69263.1| excinuclease ABC subunit B [Beggiatoa sp. PS] Length = 298 Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 142/249 (57%), Positives = 187/249 (75%), Gaps = 3/249 (1%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 I N SK FQ+Q + P GDQP AI QLLKG+ ++ Q+LLGVTGSGKTFT+A VI+ Sbjct: 36 IKNMSKP---FQLQAKFKPKGDQPQAIKQLLKGLKRGDQHQILLGVTGSGKTFTIANVIQ 92 Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 +QRP +++APNK LAAQLYSE + FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEK++S Sbjct: 93 VVQRPTLILAPNKTLAAQLYSEMRGFFPNNAVEYFVSYYDYYQPEAYMPASDTYIEKDAS 152 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 INEQID+MR SAT+++LER+D IVV+SVS IYG+G Y QM++ L G+ +EQ+ +L Sbjct: 153 INEQIDQMRLSATKAMLERSDAIVVASVSAIYGLGDPNWYLQMVLHLVRGEEIEQRFILR 212 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L + QY+R + RGT+RV G+ I+I+P+ E A RV +F ++IE +S F PLTGQ Sbjct: 213 RLTELQYRRNQTVLERGTYRVHGEVIDIYPAESERDAIRVELFDDEIESLSYFDPLTGQV 272 Query: 371 IRNVETIKI 379 +R V + I Sbjct: 273 LRRVPRVTI 281 >gi|255087270|ref|XP_002505558.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp. RCC299] gi|226520828|gb|ACO66816.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp. RCC299] Length = 1672 Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 214/373 (57%), Gaps = 27/373 (7%) Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436 + ++ H++TP L A I EL+ R EL G +EA+RLEQR D+ +L Sbjct: 354 VTLWPRQHHITPPERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNEL 413 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-------------------------LL 471 G C E+YSR+L GR GEPP TL +Y+ ++ LL Sbjct: 414 GWCPGAEHYSRHLGGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLL 473 Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531 DESHV +PQ+ M+ GD RK L G+RLPS +DNRPL FEE+ P ++VSAT Sbjct: 474 VADESHVMLPQLRAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSAT 533 Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 PG+ E E CQ +V+ ++RP+G+VDPP++I Q+ + + A +G L+ LT Sbjct: 534 PGNVENEWCQSRMVDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALT 593 Query: 592 KRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 K EDL YL E R ++HSE+ +R E ++ L+ G+ DVLVG LLREGLD+P+ Sbjct: 594 KADCEDLAGYLNEIGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQ 653 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-ITKSIQLAIDETTRRRE 709 LVA+LDA GF+RS SL+Q GRAARN + L+AD T +I A+ E +RRRE Sbjct: 654 VSLVAVLDAGVPGFMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRRE 713 Query: 710 KQLEHNKKHNINP 722 KQ + N+++ I P Sbjct: 714 KQRDFNERNGIVP 726 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%) Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSRE---KVQLLLGVTGSGKTFTMAKVIEAMQR--PA 196 ++ + P+GDQP AI++ +K H R+ + L G TG+GKTF +A VI+ + R P Sbjct: 71 SLRAPFAPAGDQPTAISECVK--HLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPT 128 Query: 197 IVMAPNKILAAQLYSEFKNFF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+ PNK LAAQ+ E + + + VE FVS++ Y PE++ Y+EK S+I+ + Sbjct: 129 LVVVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNL 186 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 D +RH ATR+L+E ++ +VV+SVSC+YG+G Y Sbjct: 187 DALRHRATRALVESDNVVVVASVSCLYGMGMPADY 221 >gi|255023705|ref|ZP_05295691.1| excinuclease ABC subunit B [Listeria monocytogenes FSL J1-208] Length = 236 Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/231 (56%), Positives = 171/231 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI QL+ G+ K Q LLG TG+GKTFT++ VI+ + +P +VMA Sbjct: 5 FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 DI RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEII 235 >gi|309800514|ref|ZP_07694666.1| UvrABC system protein B [Streptococcus infantis SK1302] gi|308115862|gb|EFO53386.1| UvrABC system protein B [Streptococcus infantis SK1302] Length = 257 Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 128/222 (57%), Positives = 170/222 (76%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y PSGDQP AI QL+ I EK Q+L+G TG+GKT+TM++VI + +P +V+A Sbjct: 10 FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH Sbjct: 70 HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL+ LV Q++R Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362 DI RG FRV GD +EIFP+ ++ A+RV FG++I+ I E Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIRE 231 >gi|326560138|gb|EGE10528.1| excinuclease ABC subunit B [Moraxella catarrhalis 46P47B1] Length = 244 Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 124/204 (60%), Positives = 164/204 (80%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+M TD+ PSGDQP AIA+L+KG+ + + QLLLGVTGSGKT+TMAKVI RPAI+MA Sbjct: 41 FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SATR+LLER D I+V+SVS IYG+G ESY +M++ + +GD V + ++ LV+ QY+R Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE 344 ++ RGT+R+ G++++I+P+ E Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESE 244 >gi|218262778|ref|ZP_03477136.1| hypothetical protein PRABACTJOHN_02815 [Parabacteroides johnsonii DSM 18315] gi|218223149|gb|EEC95799.1| hypothetical protein PRABACTJOHN_02815 [Parabacteroides johnsonii DSM 18315] Length = 280 Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 139/272 (51%), Positives = 190/272 (69%), Gaps = 8/272 (2%) Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590 TP +ELE+ +GI+V+Q+IRPTGL+DP +E+R Q++D+ +EI + R+L+T L Sbjct: 1 TPADYELEKSEGIVVDQVIRPTGLLDPVIEVRPTLNQIDDLMEEITQRSAVDERVLVTTL 60 Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRMAE+LT YL +R Y+HS+V TLERI+I+ DLR G FDVL+G+NLLREGLD+PE Sbjct: 61 TKRMAEELTTYLTRMGVRCNYIHSDVDTLERIQIMDDLRKGLFDVLIGVNLLREGLDLPE 120 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LVAILDADKEGFLRS SL QT GRAARNVN KVI YAD IT S++L +DET RRREK Sbjct: 121 VSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIFYADKITDSMRLTMDETARRREK 180 Query: 711 QLEHNKKHNINPQSVKEKIMEVI----DPILLEDAATT----NISIDAQQLSLSKKKGKA 762 QL +N+KH I P+ V + + ++ P+ E A ++ D +++K+ + Sbjct: 181 QLAYNEKHGITPKQVIKNSVSLVAEKQQPVTGEPYAYVEPEPSLVADPVVQYMNRKQLEK 240 Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ +KQM AA L+F EAA+ RDE+ +L+ Sbjct: 241 AIERTKKQMMEAAKKLDFIEAAQFRDELVKLE 272 >gi|1545864|gb|AAC45869.1| UvrB [Pseudomonas aeruginosa PAO1] Length = 238 Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 121/201 (60%), Positives = 156/201 (77%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ + + P+GDQP AI Q+++G+ + Q LLGVTGSGKTF++A VI +QRP +V+A Sbjct: 33 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 92 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR Sbjct: 93 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 152 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VS IYG+G SY +M++ L GD ++Q+ELL L QY R Sbjct: 153 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 212 Query: 321 DIGIIRGTFRVCGDSIEIFPS 341 D+ R TFRV GD I+IFP+ Sbjct: 213 DMDFARATFRVRGDVIDIFPA 233 >gi|315928533|gb|EFV07834.1| UvrABC system protein B [Campylobacter jejuni subsp. jejuni 305] Length = 285 Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 132/283 (46%), Positives = 183/283 (64%) Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 ++ +++ PS DQ AI ++K I K Q LLGVTGSGKTFTMA VI+ + P ++M+ Sbjct: 3 ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 NK L AQLYSEFK FF N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S Sbjct: 63 NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 AT SLL D + ++SVS YG+G+ Y M++ ++G + QKELL LV YKR D Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 R FRV GD I+I+P++ ED R+ FG++++ + + L +K ++++ +Y Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424 S + L A+K IK EL RL E E +L+E QRL+Q Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQ 285 >gi|323971943|gb|EGB67164.1| excinuclease ABC [Escherichia coli TA007] Length = 292 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 173/234 (73%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT+++LER D +VV+SVS IYG+G + Y +M++ L +G ++Q+ +L L + QY R Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 D RGTFRV G+ I+IFP+ +D+A RV +F ++E +S F PLTGQ + + Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 >gi|218460114|ref|ZP_03500205.1| excinuclease ABC subunit B [Rhizobium etli Kim 5] Length = 385 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/205 (63%), Positives = 162/205 (79%), Gaps = 5/205 (2%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 DLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAI Sbjct: 1 DLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAI 60 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 LDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N Sbjct: 61 LDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARRREKQMAYNL 120 Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQM 771 ++ I P+SVK KI +++D + D +IS + + + L +AHL +L K M Sbjct: 121 ENGITPESVKAKISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSM 180 Query: 772 HLAADNLNFEEAARIRDEIKRLKSS 796 AA +L+FE+AAR+RDEIKRLK++ Sbjct: 181 RDAAADLDFEKAARLRDEIKRLKAA 205 >gi|328465632|gb|EGF36854.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462] Length = 219 Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 122/219 (55%), Positives = 157/219 (71%), Gaps = 1/219 (0%) Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 EQR YD+EM+ G IENYSR++ GR PGEPP TL ++ P+D + VDESHVT+PQ Sbjct: 1 EQRTNYDIEMMREMGFTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQ 60 Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-Q 541 + GMY GD RK L YGFRLPS +DNRPL+ +E+ + VSATPG +EL + + Sbjct: 61 VKGMYNGDRARKQMLINYGFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPK 120 Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601 I EQIIRPTGL+DP +E+R Q++D+ EIN R+ +T LTK+MAEDLT+Y Sbjct: 121 EDIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDY 180 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 L + I+VRY+HS++KTLER +IIRDLRLGKFDVL+GIN Sbjct: 181 LKDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGIN 219 >gi|330880882|gb|EGH15031.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str. race 4] Length = 200 Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 118/197 (59%), Positives = 154/197 (78%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ LL L QY R Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183 Query: 321 DIGIIRGTFRVCGDSIE 337 D+ R TFRV GD I+ Sbjct: 184 DMDFARATFRVRGDVID 200 >gi|224369720|ref|YP_002603884.1| UvrB4 [Desulfobacterium autotrophicum HRM2] gi|223692437|gb|ACN15720.1| UvrB4 [Desulfobacterium autotrophicum HRM2] Length = 239 Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/222 (57%), Positives = 168/222 (75%), Gaps = 1/222 (0%) Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 MDN+PL+FEE+ L P TI VSATPG +EL++ + +QI+ PTGL+DPPVEIR+AR Q Sbjct: 1 MDNQPLKFEEFKGLVPRTIFVSATPGDYELKKAGVRVADQIVWPTGLLDPPVEIRNARMQ 60 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 V+D+Y EI + R+L+ LTK M+EDLT+Y + I+V+Y+HS++ T+ERI+II+D Sbjct: 61 VDDLYQEILKRVEAQERVLVKTLTKSMSEDLTDYNSDLGIKVKYLHSDIGTVERIDIIQD 120 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LR G FDVL+GINLLREGLDIPE LVAILDADKEGFLRS S IQ G+AARNVN +VI Sbjct: 121 LRRGLFDVLIGINLLREGLDIPEVTLVAILDADKEGFLRSFRSFIQIFGQAARNVNGRVI 180 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 +YA+ T ++ A+ E TRRR+ Q +N+ H I P ++ +KI Sbjct: 181 MYAEKETGYMKHALTE-TRRRKIQEVYNQTHGITPATINKKI 221 >gi|148645254|gb|ABR01151.1| UvrB [uncultured Geobacter sp.] Length = 236 Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 163/236 (69%) Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDT+IEK+SS+N++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y+ + + G Sbjct: 1 TDTFIEKDSSVNDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYASLHIFFHQG 60 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + LL LV+ QY+R D+ RGTFRV GD +E+FP++ D A R+ FG++IE I Sbjct: 61 EDFGRDTLLKKLVEIQYERNDMDFHRGTFRVRGDVVEVFPAYDSDKALRIEFFGDEIEAI 120 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 SE PL G ++ + IY SHYV+ R TL+ A+ I+ +L+ R+ + L EAQ Sbjct: 121 SEIDPLRGVVLQRLPKCAIYPASHYVSTRETLDRAVAQIRLDLEERIRYFRSQNMLWEAQ 180 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 R+EQR +D+EM+E G CQ IENYSRY R P EPP TL +Y PED +LFVDES Sbjct: 181 RIEQRTYFDIEMMEGMGFCQGIENYSRYFDNRQPNEPPYTLIDYFPEDFVLFVDES 236 >gi|148645250|gb|ABR01149.1| UvrB [uncultured Geobacter sp.] Length = 236 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 161/236 (68%) Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDT+IEK+SSIN++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y + + G Sbjct: 1 TDTFIEKDSSINDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYQALHIFFHQG 60 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + LL LV+ QY+R D RGTFRV GD +E+FP++ D A RV FG+++E I Sbjct: 61 EEFGRDTLLKKLVEIQYERNDTDFHRGTFRVRGDVVEVFPAYDNDKALRVEFFGDEVEAI 120 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 SE PL G ++ + IY SHYV+ R TL A++ I+ +L R+ + LLEAQ Sbjct: 121 SEIDPLRGAVLQRLTKCAIYPASHYVSTRETLEKAVELIRVDLGERIRYFRERNMLLEAQ 180 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 R+EQR +D+EM+E G CQ IENYSRY GR GEP TL +Y P+D +LFVDES Sbjct: 181 RIEQRTFFDIEMMEEMGFCQGIENYSRYFDGRQAGEPGYTLIDYFPDDFVLFVDES 236 >gi|148645252|gb|ABR01150.1| UvrB [uncultured Geobacter sp.] Length = 236 Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 121/236 (51%), Positives = 160/236 (67%) Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 TDT+IEK+SSIN++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y + + + G Sbjct: 1 TDTFIEKDSSINDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYQALHIFFRQG 60 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + LL LV+ QY+R D RG FRV GD +E+FP++ D A R+ FG+ +E + Sbjct: 61 EEYGRDTLLKKLVEIQYERNDTDFHRGAFRVRGDVVEVFPAYDNDKALRIEFFGDQVEAV 120 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 SE PL G ++ + IY SHYV+ R TL A++ I+ L R+ + LLEAQ Sbjct: 121 SEIDPLRGTVLQRLAKCAIYPASHYVSTRETLEKAVEQIRVNLGERIRWFRERNMLLEAQ 180 Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 R+EQR +D+EM+E TG CQ IENYSRY GR GEP TL +Y P+D +LFVDES Sbjct: 181 RIEQRTFFDIEMMEETGFCQGIENYSRYFDGRQAGEPGYTLIDYFPDDFVLFVDES 236 >gi|110003545|emb|CAJ87487.1| excinuclease ABC subunit B [Candidatus Phytoplasma vitis] Length = 289 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 133/285 (46%), Positives = 190/285 (66%), Gaps = 10/285 (3%) Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 +DNRPL F E+ I +SATPG++E+++ + I+EQIIRPT ++DP +E+R + Q Sbjct: 2 LDNRPLTFSEFEKKMDKVIYLSATPGNYEIDK-KIPIIEQIIRPTFILDPIIELRPTQNQ 60 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 +ED+Y EI A++ R L+T +T M+E+LT YL + I+V Y+HSE+K+LER+ I++ Sbjct: 61 IEDLYLEIKSRAEKNERTLVTTITINMSEELTNYLKKIGIKVAYLHSEIKSLERMIILKK 120 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LR G +D LVG+NLLREGLD+PE LVAILDADK GFLRS+ SLIQTIGRAARN+ KVI Sbjct: 121 LRTGVYDCLVGVNLLREGLDLPEVSLVAILDADKPGFLRSEKSLIQTIGRAARNICGKVI 180 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 +Y D IT +++ AI ET RRR+ Q +N KHN+ P + + I + D + + Sbjct: 181 MYGDEITNAMETAIQETLRRRQIQENYNLKHNLKPTIIHKNIKQTTD-------INKDKN 233 Query: 748 IDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEI 790 D + S+K+ + LK L+ M A+ L+FE+A R+ I Sbjct: 234 EDIESFLFSEKQSPKNYSLKKLQSLMKKASKKLDFEKAMFYRNLI 278 >gi|498140|gb|AAA27703.1| ABC excision endonuclease subunit [Zymomonas mobilis] gi|1583684|prf||2121335A uvrB gene Length = 284 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/224 (57%), Positives = 162/224 (72%), Gaps = 10/224 (4%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 E A G R L+T LTKRMAEDLTEY+YE ++VRYMHS+V+T+ERIE+IRDLRLG + Sbjct: 12 EAKKTAAAGWRSLVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVY 71 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 DVL+GINLLREGLDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN +VILY D I Sbjct: 72 DVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKI 131 Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDA 750 T S+ A+ ET RRR KQ+ NK HNI P +VK ++ +++ + +AA T + D Sbjct: 132 TGSMARAMAETERRRIKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENHDP 191 Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + L+ S + K+M AA NL FE+AA++RD + +LK Sbjct: 192 KVLARS-------ISETEKEMLEAAANLEFEKAAQLRDVLHQLK 228 >gi|213423574|ref|ZP_03356554.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 247 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 132/244 (54%), Positives = 168/244 (68%), Gaps = 22/244 (9%) Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 TQV+D+ EI A R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ER+EII Sbjct: 4 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 63 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 RDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAARNVN K Sbjct: 64 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 123 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745 ILY D IT S+ AI ET RRREKQ ++N++H I PQ + +K+++++ A N Sbjct: 124 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-------ALGQN 176 Query: 746 ISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790 I+ +L ++ K + + L +QM A NL FEEAA+IRD++ Sbjct: 177 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQIRDQL 236 Query: 791 KRLK 794 +L+ Sbjct: 237 HQLR 240 >gi|142781|gb|AAA22360.1| putative cytoplasmic protein; putative [Bacillus subtilis subsp. subtilis str. 168] Length = 186 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 109/182 (59%), Positives = 143/182 (78%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P GDQP AI +L+KGI +K Q LLG TG+GKTFT++ +I+ + +P +V+A Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+ +E+ ELL LV QY R Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVAIQYARN 184 Query: 321 DI 322 DI Sbjct: 185 DI 186 >gi|145641146|ref|ZP_01796727.1| excinuclease ABC subunit B [Haemophilus influenzae R3021] gi|145274307|gb|EDK14172.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21] Length = 224 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/225 (55%), Positives = 165/225 (73%), Gaps = 15/225 (6%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 +T LTK+MAEDLT+YL E IRVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGL Sbjct: 1 MTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGL 60 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706 DIPE LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ AI ET R Sbjct: 61 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNR 120 Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS---------- 756 RREKQ+++N++H I PQ++ +K+ E++D + A + Q+ ++ Sbjct: 121 RREKQIKYNEEHGIVPQALNKKVGELLD---IGQGANQKAKANKQRGKMAAEPTALYNAP 177 Query: 757 --KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799 K+ + +K L +QM+ A +L FE+AA IRD++ +L+ F Sbjct: 178 KNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVF 222 >gi|315283616|ref|ZP_07871758.1| UvrABC system protein B [Listeria marthii FSL S4-120] gi|313612740|gb|EFR86740.1| UvrABC system protein B [Listeria marthii FSL S4-120] Length = 228 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/229 (53%), Positives = 170/229 (74%), Gaps = 4/229 (1%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 ++D+ DEIN ++ R+L+T LTK+M+EDLT YL E ++V+Y+HSEVKTLERIEIIRD Sbjct: 1 IDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRD 60 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LRLG +DV+VGINLLREG+D+PE LVAILDADKEGFLRS+ SLIQT+GRAARN N +VI Sbjct: 61 LRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVI 120 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 +YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I +I AA + Sbjct: 121 MYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---SAADEREA 177 Query: 748 IDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + LS +SKK+ ++ + +M AA L+FE AA +RD + +K+ Sbjct: 178 VKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 226 >gi|309800512|ref|ZP_07694664.1| UvrABC system protein B [Streptococcus infantis SK1302] gi|308115860|gb|EFO53384.1| UvrABC system protein B [Streptococcus infantis SK1302] Length = 226 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 124/225 (55%), Positives = 166/225 (73%), Gaps = 9/225 (4%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 EIN ++ R +T LTK+MAEDLT+Y E I+V+YMHS++KTLER EIIRDLRLG F Sbjct: 6 EINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVF 65 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 DVLVGINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAARN VI+YADT+ Sbjct: 66 DVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADTM 125 Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PILLEDAATTNISIDA 750 T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + E+ +I+ Sbjct: 126 TQSMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISVTKTVAKEEDKEVDIN--- 182 Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 SL+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 183 ---SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 224 >gi|77410047|ref|ZP_00786599.1| excinuclease ABC, chain B [Streptococcus agalactiae COH1] gi|77171344|gb|EAO74661.1| excinuclease ABC, chain B [Streptococcus agalactiae COH1] Length = 190 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 107/178 (60%), Positives = 138/178 (77%) Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 KD F++ + Y PSGDQP AI L+ I EK Q+L G TG+GKT+TM++VI + +P Sbjct: 5 KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64 Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I Sbjct: 65 TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G + + +LL++LV Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLV 182 >gi|156301952|ref|XP_001617427.1| hypothetical protein NEMVEDRAFT_v1g226090 [Nematostella vectensis] gi|156193726|gb|EDO25327.1| predicted protein [Nematostella vectensis] Length = 221 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/218 (51%), Positives = 152/218 (69%) Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 +VT L A+ I++++ ++ ++ G+ LEA+RLE+R +DLEM+ G C IEN Sbjct: 2 FVTSPDVLQKAIWEIQQDMVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYCSGIEN 61 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 YSRYL GR G P L +Y P+D L+ VDESHVTI Q+ MY GD RK L EYGFRL Sbjct: 62 YSRYLDGREAGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKENLVEYGFRL 121 Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564 P+ MDNRPL+FEE+ L+ + VSATP +ELE+ +GI VEQIIRPTGL+DP +EIR + Sbjct: 122 PAAMDNRPLKFEEFEALQNQVVYVSATPADYELEKSEGIYVEQIIRPTGLLDPIIEIRPS 181 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 Q++D+ +EI L + R+L+T LTKRMAE+LT+YL Sbjct: 182 ENQIDDLIEEIQLRCEADERVLITTLTKRMAEELTKYL 219 >gi|308445934|ref|XP_003087055.1| hypothetical protein CRE_21113 [Caenorhabditis remanei] gi|308264371|gb|EFP08324.1| hypothetical protein CRE_21113 [Caenorhabditis remanei] Length = 214 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 110/199 (55%), Positives = 143/199 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + ++Y P+GDQP AIA+L+ GI + Q L G+TGSGKTFTMA VI ++RP I++A Sbjct: 6 FILHSNYIPAGDQPEAIARLISGIDNGATHQTLKGITGSGKTFTMANVIHRLKRPTIILA 65 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK L AQLY E K FFP NAVEYFVSYYDY+QPE Y+P +D +I+K+S+IN+ ++R+R Sbjct: 66 PNKTLTAQLYDEMKRFFPENAVEYFVSYYDYFQPEVYIPGSDRFIQKDSAINDHLERLRL 125 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 S T+SL+ER D IVV+SVS IYG+G SY + + L G EQKEL+ L QY+R Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPSSYKALQIPLAPGAQFEQKELIHRLALLQYERS 185 Query: 321 DIGIIRGTFRVCGDSIEIF 339 + I R FRV GD I+IF Sbjct: 186 EKTIKRAMFRVRGDIIDIF 204 >gi|298364138|gb|ADI79212.1| UvrABC system protein B [Halococcus hamelinensis] Length = 234 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 110/235 (46%), Positives = 161/235 (68%), Gaps = 1/235 (0%) Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 QPEAYV +DTYI+K++SIN++IDR+RHSATRSLL R+D IVV+SVS IYG+G +Y Sbjct: 1 QPEAYVEASDTYIDKDASINDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYID 60 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 M ++L +GD++++ +LL LV Y+R D+ +GTFRV GD++EIFP + A RV Sbjct: 61 MSLELDVGDTIDRDDLLKRLVDLNYERNDVDFTQGTFRVRGDTVEIFPMYGR-FAVRVEF 119 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 +G++I+ +S+ PL G+ + + I+ HY P TL+TA+ I+ ++ R+ E+ Sbjct: 120 WGDEIDRLSKLDPLEGEVKSDEPAVLIHPAEHYSIPENTLDTAINEIEGLMEERVSYFER 179 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 L+ AQR+E+R T+DLEML TG C IENYS +L+ R PG+ P TL +Y P+ Sbjct: 180 NNDLVAAQRIEERTTFDLEMLRETGYCSGIENYSVHLSDREPGDAPATLLDYFPD 234 >gi|330980693|gb|EGH78796.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 169 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/166 (62%), Positives = 137/166 (82%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ+ T + P+GDQP AI QL++GI + Q LLGVTGSGKTF++A VI ++RP +V+A Sbjct: 4 FQLVTRFEPAGDQPEAIRQLVEGIDAGLAPQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 SAT++LLER D I+V++VSCIYG+GS E+Y +M++ + GD ++Q+ Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQR 169 >gi|145629306|ref|ZP_01785105.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] gi|144978809|gb|EDJ88532.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] Length = 217 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 120/218 (55%), Positives = 158/218 (72%), Gaps = 15/218 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAEDLT+YL E IRVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE L Sbjct: 1 MAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 60 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 VAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ AI ET RRREKQ + Sbjct: 61 VAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNRRREKQTK 120 Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS------------KKKGK 761 +N++H I PQ++ +K+ E++D + A + Q+ ++ K+ + Sbjct: 121 YNEEHGIVPQALNKKVGELLD---IGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQ 177 Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799 +K L +QM+ A +L FE+AA IRD++ +L+ F Sbjct: 178 QQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVF 215 >gi|261885396|ref|ZP_06009435.1| excinuclease ABC subunit B [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 234 Score = 227 bits (579), Expect = 6e-57, Method: Composition-based stats. Identities = 118/230 (51%), Positives = 161/230 (70%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PS DQ A+ ++ I S K +LLGVTGSGKTFTMA VI+ + P ++M Sbjct: 4 FEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTLIMT 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R+R Sbjct: 64 HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 SAT +LLE +D +VV+SVS YG+G+ Y M++ L +G S+ QKELL LV YKR Sbjct: 124 SATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGYKRN 183 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 D RG FRV GD ++I+P++ D A R+ FG++++ + F L ++ Sbjct: 184 DAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKR 233 >gi|227326992|ref|ZP_03831016.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/217 (55%), Positives = 155/217 (71%), Gaps = 5/217 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLR Sbjct: 1 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLR 60 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 EGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAARN++ K ILY D IT S+ AI E Sbjct: 61 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLSGKAILYGDRITASMAKAIGE 120 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS-----LSKK 758 T RRREKQ +N +H I PQ + +KI +++ + + A + + ++ K Sbjct: 121 TERRREKQEAYNTEHGIVPQGINKKISDILQLGRPTNKGKGRGNRKAAEPTARYELMTPK 180 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + ++ L +M A NL FEEAA +RDE++ L++ Sbjct: 181 ALELKIRELESKMLTHAQNLEFEEAAALRDEVQALRA 217 >gi|303288766|ref|XP_003063671.1| exinuclease ABC subunits B and C-containing protein [Micromonas pusilla CCMP1545] gi|226454739|gb|EEH52044.1| exinuclease ABC subunits B and C-containing protein [Micromonas pusilla CCMP1545] Length = 1800 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 238/480 (49%), Gaps = 90/480 (18%) Query: 147 YHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQRP--AIVMAPNK 203 + P+GDQPAAIA + +H R + L G TG+GKTF +A VI + +P +V+ PNK Sbjct: 118 FAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVVPNK 177 Query: 204 ILAAQLYSEFKNFFPHN-AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262 LAAQ+ E + + + VE FVS++ Y PE+Y Y+EK S++++ ++ +RH A Sbjct: 178 TLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALRHRA 235 Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG---------DSVEQKELLSSLV 313 T++LLE +D +VV+SVSC+YG+G Y + + G D+V ++ L SL+ Sbjct: 236 TKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARR-LTESLL 294 Query: 314 KQQYK--RQDIGIIRGTFRVCGDS---------IEIFPSHLE-----DVAWRVSMFG--- 354 ++ K R D G+ RG + G++ I ++P + E DVA S+ G Sbjct: 295 YEETKDARWD-GVSRGQWAWQGEADADVDGARRIAVWPPYEEAPVEMDVAPDGSLVGFGR 353 Query: 355 -------------NDIEE---ISEFYPLTGQKIRNV-------------------ETIKI 379 D+E ++ R + + I Sbjct: 354 MRSAYDADASYVEADVEADVAVAGKKKKKKTATRGTRRGDFVSAAADGEPLPPPPDRVTI 413 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 + H++TP L A + IK E++ R EL G +EA RLEQR D+ +L G C Sbjct: 414 WPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLRELGWC 473 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI-------------------PEDSLLFVDESHVTI 480 E+YSR+L GR+ G PP TL +Y D LL DESHV + Sbjct: 474 PGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADESHVML 533 Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 PQ+ M+ GD RK L G+RLPS +DNRPL F+E+ P ++VSATPG+ E C Sbjct: 534 PQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATPGAIEEAWC 593 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL- 602 +V+ ++RP+G++DPPV + Q+ ++ + A +G L+ LTK EDL YL Sbjct: 656 MVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCEDLAGYLN 715 Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 R ++HSE+ +R + ++ L+ G+ DVLVG LLREGLD+P+ LVA+LDA Sbjct: 716 CLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVAVLDAGVP 775 Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYAD-TITKSIQLAIDETTRRREKQLEHNKKHNIN 721 GF+RS SLIQ GRAARN + +AD T+++ AIDE RRR KQ HN KH I Sbjct: 776 GFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAHNAKHGIT 835 Query: 722 PQSV 725 P++ Sbjct: 836 PKNA 839 >gi|254226405|ref|ZP_04919993.1| UvrABC system protein B [Vibrio cholerae V51] gi|125621094|gb|EAZ49440.1| UvrABC system protein B [Vibrio cholerae V51] Length = 218 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 118/214 (55%), Positives = 155/214 (72%), Gaps = 16/214 (7%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAEDLTEYL+E ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE L Sbjct: 1 MAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVAL 60 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 VAILDADKEGFLRS+ SLIQT+GRAARNVN K ILYAD+ITKS++ AIDET RRREKQL Sbjct: 61 VAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLA 120 Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-------------KKG 760 +N++ I PQ +K + ++++ L D A + +++ + L+K ++ Sbjct: 121 YNEQRGITPQPLKRSVKDIME---LGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQL 177 Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + + L M+ A NL FE AA+ RDEI +L+ Sbjct: 178 EKEISKLEAAMYQHAQNLEFELAAQKRDEIHQLR 211 >gi|289606530|emb|CBI61152.1| unnamed protein product [Sordaria macrospora] Length = 165 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 106/166 (63%), Positives = 130/166 (78%), Gaps = 1/166 (0%) Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165 +A +I++D + G+ + PHR + F ++++Y P+GDQP AIA+L+ Sbjct: 1 MAIMIRTDLSEPETGQTFIPHRPARPDKVDAGKRFV-IKSEYQPAGDQPTAIAELVAAAK 59 Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 + EK Q+LLGVTGSGKTFTMAK IE +QRPA+++APNKILAAQLY E K+FFP NAVEYF Sbjct: 60 AGEKDQVLLGVTGSGKTFTMAKTIEELQRPALILAPNKILAAQLYGEMKSFFPDNAVEYF 119 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 VSYYDYYQPEAYVPR+DTYIEKESS NE IDRMRHSATRSLLER+D Sbjct: 120 VSYYDYYQPEAYVPRSDTYIEKESSTNEAIDRMRHSATRSLLERDD 165 >gi|153865626|ref|ZP_01997878.1| Excinuclease ABC, B subunit [Beggiatoa sp. SS] gi|152145173|gb|EDN72121.1| Excinuclease ABC, B subunit [Beggiatoa sp. SS] Length = 214 Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 142/199 (71%) Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 +YSE FFPHNAVEYFVSYYDYYQPEAY+P +DTYIEK++SINE ID+MR SAT+++LE Sbjct: 1 MYSERGGFFPHNAVEYFVSYYDYYQPEAYMPASDTYIEKDASINEHIDQMRLSATKAMLE 60 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 R D I+V+SVS IYG+G E Y QM++ G+ +E + +L L + QY R D ++RGT Sbjct: 61 RADAIIVASVSAIYGLGDPEWYKQMVLHFVCGEEMEHRFILRRLAELQYTRNDTVLVRGT 120 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 +RV G+ I+I+P+ E A RV +F ++IE +S F PLTGQ +R + +Y +HYVTP Sbjct: 121 YRVRGEVIDIYPAESERDAIRVELFDDEIESLSYFDPLTGQILRRARRLTLYPKNHYVTP 180 Query: 389 RPTLNTAMKYIKEELKMRL 407 R L A+ IK+E RL Sbjct: 181 REVLLQAIDKIKKERLDRL 199 >gi|309807260|ref|ZP_07701231.1| helicase C-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|308166351|gb|EFO68559.1| helicase C-terminal domain protein [Lactobacillus iners LactinV 03V1-b] Length = 211 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 119/211 (56%), Positives = 155/211 (73%), Gaps = 4/211 (1%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 +T LTK+M+EDLT+YL E I+V+Y+HSE+KTLER++IIRDLRLGKFDVLVGINLLREG+ Sbjct: 1 MTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLERMKIIRDLRLGKFDVLVGINLLREGI 60 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706 D+PE LVAILDADKEGFLRS L+Q +GRAARN N KVI+YAD IT S+Q AID T R Sbjct: 61 DVPEVSLVAILDADKEGFLRSTRPLVQMMGRAARNENGKVIMYADHITDSMQAAIDVTER 120 Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAH 763 RR Q+ N+KH+I P+++ + I ++I D +I+ D L+ LS K+ + Sbjct: 121 RRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVDQKDKHIN-DFSDLNFDELSAKQKEQM 179 Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + +L +QM +AA L+FE AA +RD I LK Sbjct: 180 IINLTEQMKIAAQKLDFETAATLRDAIIDLK 210 >gi|167957456|ref|ZP_02544530.1| excinuclease ABC subunit B [candidate division TM7 single-cell isolate TM7c] Length = 215 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 114/212 (53%), Positives = 157/212 (74%), Gaps = 3/212 (1%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+T LTKRMAEDL+ YL E I+ Y+HSE+ TLER +I+RDLR G +DVLVGINLLR Sbjct: 5 RVLVTTLTKRMAEDLSTYLQELGIKTAYIHSEIDTLERGDILRDLRSGVYDVLVGINLLR 64 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 EGLD+PE LVAI+DADKEGFLRS+++LIQTIGRAAR+V KV++Y D IT+S++LAIDE Sbjct: 65 EGLDLPEVSLVAIMDADKEGFLRSESALIQTIGRAARHVEGKVLMYGDVITRSMRLAIDE 124 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763 T RR+ Q ++N ++NI P+ V + I E + I+ + ID ++ + K++ A Sbjct: 125 TNSRRKLQQQYNLENNITPRGVDKAIDEGLRAIIPQ-KDNEKPKIDLKK--IPKEEYGAL 181 Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +K L QM+LA+ NL FE+AA +RD I +++ Sbjct: 182 VKDLTNQMNLASANLEFEKAAELRDLIAEIRN 213 >gi|300813350|ref|ZP_07093701.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512493|gb|EFK39642.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 208 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/197 (56%), Positives = 149/197 (75%), Gaps = 5/197 (2%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAEDLT++ E I+ YMHS+V+TLER++II+DLR K DVLVGINLLREGLD+PE L Sbjct: 1 MAEDLTKHFKEIGIKATYMHSDVETLERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSL 60 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 VAILDADKEGFLRS+TSLIQT GRAARNV+ KVI+YAD IT+S++ IDET RRR+ Q Sbjct: 61 VAILDADKEGFLRSRTSLIQTAGRAARNVSGKVIMYADNITESMKETIDETNRRRKIQDA 120 Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQM 771 +NK+H I P+S+ + I +V++ L AA +++S + +K + +A + +L+ QM Sbjct: 121 YNKEHGIVPKSIIKDIRDVLNTTL---AAESDVSFKEEDFEDEFTKDEIQAMIDALKPQM 177 Query: 772 HLAADNLNFEEAARIRD 788 + AA+ L+FE+AA IRD Sbjct: 178 YEAAEALDFEKAAEIRD 194 >gi|254672085|emb|CBA04747.1| excinuclease ABC subunit B [Neisseria meningitidis alpha275] Length = 198 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 141/203 (69%), Gaps = 20/203 (9%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 +RY+HS++ T+ER+EIIRDLR+G FDVLVGINLLREGLDIPE LVAILDADKEGFLRS Sbjct: 1 MRYLHSDIDTVERVEIIRDLRIGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSH 60 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 SLIQTIGRAARNVN ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K++ Sbjct: 61 RSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQ 120 Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAAD 776 + ++ID + E+ D+ + L K G+ H + L K M AA Sbjct: 121 VKDIIDGVYHEE--------DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAAR 172 Query: 777 NLNFEEAARIRDEIKRLKSSPYF 799 +L FEEAA +RD I+ +K + F Sbjct: 173 DLQFEEAAVLRDRIRNIKENLLF 195 >gi|145641147|ref|ZP_01796728.1| excinuclease ABC subunit B [Haemophilus influenzae R3021] gi|145274308|gb|EDK14173.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21] Length = 150 Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 90/138 (65%), Positives = 109/138 (78%) Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 G C IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD RK T Sbjct: 5 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 64 Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L EYGFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I++Q++RPTGL+D Sbjct: 65 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 124 Query: 557 PPVEIRSARTQVEDVYDE 574 P +EIR QV+D+ E Sbjct: 125 PLIEIRPVSIQVDDLLSE 142 >gi|309800513|ref|ZP_07694665.1| UvrABC system protein B [Streptococcus infantis SK1302] gi|308115861|gb|EFO53385.1| UvrABC system protein B [Streptococcus infantis SK1302] Length = 181 Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 96/181 (53%), Positives = 127/181 (70%), Gaps = 1/181 (0%) Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 + A+ I+ EL+ +L EKEG+LLEAQRL+QR YD+EML G +ENYSR++ G Sbjct: 1 MEVAIAKIEAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG 60 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511 R+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD RK L YGFRLPS +DNR Sbjct: 61 RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNR 120 Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571 PLR EE+ + VSATPG +E+EQ +I EQIIRPTGL+DP VE+R Q++D+ Sbjct: 121 PLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVEVRPTMGQIDDL 179 Query: 572 Y 572 + Sbjct: 180 F 180 >gi|118566776|gb|ABL01707.1| unknown [Salmonella enterica subsp. enterica serovar Typhi] Length = 145 Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/145 (66%), Positives = 119/145 (82%) Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 PG++ELE+ +V+Q++RPTGL+DP +E+R TQV+D+ EI A R+L+T LT Sbjct: 1 PGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 60 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 KRMAEDLTEYL E RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE Sbjct: 61 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 120 Query: 652 GLVAILDADKEGFLRSKTSLIQTIG 676 LVAILDADKEGFLRS+ SLIQTIG Sbjct: 121 SLVAILDADKEGFLRSERSLIQTIG 145 >gi|260221136|emb|CBA29400.1| hypothetical protein Csp_A11950 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 199 Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 91/137 (66%), Positives = 110/137 (80%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ Y P+GDQP AI+QL+ G+ E Q LLGVTGSGKTFTMA VI + RPAIV A Sbjct: 47 FELYQPYPPAGDQPEAISQLVSGVEDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 106 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR Sbjct: 107 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 166 Query: 261 SATRSLLERNDCIVVSS 277 S T+SLLER D ++V++ Sbjct: 167 SCTKSLLERRDVVIVAT 183 >gi|118566923|gb|ABL01773.1| unknown [Salmonella enterica subsp. enterica serovar Typhi] Length = 145 Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 97/145 (66%), Positives = 119/145 (82%) Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 PG++ELE+ +V+Q++RPTGL+DP +E+R TQV+D+ EI A R+L+T LT Sbjct: 1 PGNYELEKSGDEVVDQVVRPTGLLDPIIEVRLVATQVDDLLSEIRQRAAINERVLVTTLT 60 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 KRMAEDLTEYL E RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE Sbjct: 61 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 120 Query: 652 GLVAILDADKEGFLRSKTSLIQTIG 676 LVAILDADKEGFLRS+ SLIQTIG Sbjct: 121 SLVAILDADKEGFLRSERSLIQTIG 145 >gi|15667436|dbj|BAB68219.1| putative excinuclease ABC B subunits [Enterococcus faecium] Length = 194 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 134/194 (69%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296 YVP +DTYIEK+SS+N++ID++RHSAT SLLERND IV++SVSCI+G+GS Y + +V Sbjct: 1 YVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVS 60 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 ++ G +++ +L+ LV Q++R DI RG FRV GD +EIFP+ ++ A RV FG++ Sbjct: 61 IRQGAELDRNQLIRDLVSIQFERNDIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDE 120 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 +E I E LTG+ + E + I+ +H+VT + A+ IK EL+ RL L E +L Sbjct: 121 VERIREVNALTGEVLGETEHVAIFPATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKL 180 Query: 417 LEAQRLEQRITYDL 430 LEAQRLEQR YD+ Sbjct: 181 LEAQRLEQRTNYDI 194 >gi|213584872|ref|ZP_03366698.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 159 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/155 (61%), Positives = 123/155 (79%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + PSGDQP AI +L +G+ Q LLGVTGSGKTFT+A VI +QRP +V+A Sbjct: 5 FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 SAT++LLER D +VV+SVS IYG+G + Y +M++ Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMML 159 >gi|270643339|ref|ZP_06222142.1| UvrABC system, protein B [Haemophilus influenzae HK1212] gi|270317312|gb|EFA28863.1| UvrABC system, protein B [Haemophilus influenzae HK1212] Length = 142 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 88/142 (61%), Positives = 114/142 (80%) Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + RPA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SI Sbjct: 1 LNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASI 60 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 N+QI++MR SAT+S LER D IVV+SVS IYG+G +SY QM++ L+ G ++Q+++L+ Sbjct: 61 NDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAK 120 Query: 312 LVKQQYKRQDIGIIRGTFRVCG 333 L + QY R D RGTFRV G Sbjct: 121 LAELQYTRNDQAFQRGTFRVRG 142 >gi|77407386|ref|ZP_00784276.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B] gi|77174005|gb|EAO76984.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B] Length = 200 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 134/188 (71%) Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 +DTYIEK+SS+N++ID++RHSAT SLLERND IVV+SVSCIYG+GS + Y+ +V L+ G Sbjct: 4 SDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPG 63 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + +LL++LV Q++R DI RG FRV GD +E+FP+ ++ A+R+ FG++I+ I Sbjct: 64 QEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRI 123 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420 E LTG+ + VE + I+ +H++T + A+ I+ E++ ++ EKEG+L+EAQ Sbjct: 124 REIESLTGRVLGEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQ 183 Query: 421 RLEQRITY 428 R+ QR Y Sbjct: 184 RIRQRTEY 191 >gi|289808085|ref|ZP_06538714.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 127 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 83/126 (65%), Positives = 101/126 (80%) Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509 +GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD RK TL EYGFRLPS +D Sbjct: 1 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 60 Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569 NRPL+FEE+ L P TI VSATPG++ELE+ +V+Q++RPTGL+DP +E+R TQV+ Sbjct: 61 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVD 120 Query: 570 DVYDEI 575 D+ EI Sbjct: 121 DLLSEI 126 >gi|294637391|ref|ZP_06715684.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685] gi|291089438|gb|EFE21999.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685] Length = 185 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 99/181 (54%), Positives = 125/181 (69%), Gaps = 13/181 (7%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 IIRDLRLG+FD LVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAARN+N Sbjct: 1 IIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLN 60 Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743 K ILY D+IT S+ AI ET RRRE+Q N H I PQ++ +K+ +++ L DAAT Sbjct: 61 GKAILYGDSITPSMARAIGETERRRERQQAFNLAHGIVPQALNKKVTDILQ---LGDAAT 117 Query: 744 TN--------ISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 + + Q+ LS K+ + ++ L QM+ A NL FE+AA +RDEI +L Sbjct: 118 RGRGKGTRGQRAAEPQRAYSGLSAKQLEQQIQRLESQMYQHAQNLEFEQAAALRDEIHQL 177 Query: 794 K 794 + Sbjct: 178 R 178 >gi|307944240|ref|ZP_07659581.1| UvrABC system protein B [Roseibium sp. TrichSKD4] gi|307772586|gb|EFO31806.1| UvrABC system protein B [Roseibium sp. TrichSKD4] Length = 284 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/152 (59%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704 GLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S+ AI ET Sbjct: 11 GLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADNMTGSMDRAIKET 70 Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764 RRREKQL +N++H I P+SVK I ++++ + +D T A+ +L KAH+ Sbjct: 71 NRRREKQLAYNEEHGITPESVKRSIGDILESVYEQDHVTVEAGF-AEDGNLVGHNLKAHI 129 Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 + L KQM AA +L+FE AAR+RDEIKRL+ + Sbjct: 130 EDLEKQMRDAAADLDFETAARLRDEIKRLQET 161 >gi|270659740|ref|ZP_06222388.1| UvrABC system, protein B [Haemophilus influenzae HK1212] gi|270316921|gb|EFA28617.1| UvrABC system, protein B [Haemophilus influenzae HK1212] Length = 139 Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 83/139 (59%), Positives = 105/139 (75%) Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 MYRGD RK TL EYGFRLPS +DNRPLRFEE+ L P TI VSATPG +ELE+ I+ Sbjct: 1 MYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEII 60 Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605 +Q++RPTGL+DP +EIR QV+D+ E A + R+L+T LTK+MAEDLT+YL E Sbjct: 61 DQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEH 120 Query: 606 NIRVRYMHSEVKTLERIEI 624 IRVRY+HS++ T+ER+EI Sbjct: 121 GIRVRYLHSDIDTVERVEI 139 >gi|156185986|gb|ABU55311.1| excinuclease ABC subunit B [Callosobruchus chinensis] Length = 122 Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 80/120 (66%), Positives = 99/120 (82%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L+ G++S ++ Q+LLGVTGSGKTFTMA VI RPA++MA NK LAAQLY E K FP+ Sbjct: 3 LIAGLNSNKRDQILLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLFPN 62 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 NAV YF+SYYDYYQ EAY+P+TDTYIEK+S+IN++ID +R+SA SLLER D IVV+SVS Sbjct: 63 NAVGYFISYYDYYQSEAYLPQTDTYIEKDSAINDRIDMLRYSAVCSLLERRDTIVVASVS 122 >gi|119632706|gb|ABL84360.1| excinuclease ABC, B subunit [Streptococcus suis] Length = 167 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/173 (51%), Positives = 127/173 (73%), Gaps = 11/173 (6%) Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 DLRLG FDVL+GINLLREG+D+PE LVAILDADKEGFLR++ LIQTIGRAARN V Sbjct: 1 DLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHV 60 Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746 I+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I + T + Sbjct: 61 IMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI-------SVTKAV 113 Query: 747 SIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 + D +++ +L+K + KA +K L QM AA+ L+FE AA+IRD + LK+ Sbjct: 114 TQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 166 >gi|257413531|ref|ZP_04743369.2| excinuclease ABC, B subunit [Roseburia intestinalis L1-82] gi|257203152|gb|EEV01437.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82] Length = 122 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 75/115 (65%), Positives = 93/115 (80%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + Y P+GDQP AI +L+KG + Q LLGVTGSGKTFTMA VI+A+ +P ++++ Sbjct: 8 FKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTLIIS 67 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+I Sbjct: 68 HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEI 122 >gi|255019193|ref|ZP_05291319.1| excinuclease ABC subunit B [Listeria monocytogenes FSL F2-515] Length = 177 Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 111/177 (62%) Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 L ER D I+++SVSCIYG+GS Y +M+V L++G + + +LL LV QY R DI Sbjct: 1 LFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQ 60 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 RG FRV GD +EIFP+ ++ R+ FG++IE I E LTG+ I E + I+ SH+ Sbjct: 61 RGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIFPASHF 120 Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 VT + A+ IK EL+ RL L + +LLEAQRLEQR YDLEM+E G C I Sbjct: 121 VTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCSGI 177 >gi|207110031|ref|ZP_03244193.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1] Length = 131 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/118 (63%), Positives = 93/118 (78%) Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 SE+ +ER +IR LRL +FD+L+GINLLREGLD+PE LVAI+DADKEGFLRS+TSLIQ Sbjct: 11 SEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 70 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 T+GRAARN N KV+LYA IT+S+Q A + T+ RR KQ E NK HNI P++V + E Sbjct: 71 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEE 128 >gi|145629307|ref|ZP_01785106.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] gi|144978810|gb|EDJ88533.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] Length = 115 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 66/105 (62%), Positives = 80/105 (76%) Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 L +DESHVT+PQI GMYRGD RK TL EYGFRLPS +DNRPLRFEE+ L P TI VS Sbjct: 3 FLIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVS 62 Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574 ATPG +ELE+ I++Q++RPTGL+DP +EIR QV+D+ E Sbjct: 63 ATPGPYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSE 107 >gi|207109632|ref|ZP_03243794.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1] Length = 129 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/129 (51%), Positives = 93/129 (72%), Gaps = 3/129 (2%) Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 +N A+K I++EL +RL +++ ++LE RL+QR +DLEM+ TG C+ IENY+R+ TG Sbjct: 1 MNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTG 60 Query: 452 RNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 + P E P LF+Y+ + L+ VDESHV++PQ GMY GD RK+ L EYGFRLPS + Sbjct: 61 KAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSAL 120 Query: 509 DNRPLRFEE 517 DNRPL+F+E Sbjct: 121 DNRPLKFDE 129 >gi|289644706|ref|ZP_06476767.1| UvrB/UvrC protein [Frankia symbiont of Datisca glomerata] gi|289505495|gb|EFD26533.1| UvrB/UvrC protein [Frankia symbiont of Datisca glomerata] Length = 195 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 112/184 (60%), Gaps = 28/184 (15%) Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLD+PE LV+ILDADKEGFLRS SLIQTIGRAARNV+ +V +YAD +T S++ Sbjct: 1 INLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAARNVSGQVHMYADKVTPSMR 60 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL----- 753 AI+ET RRR KQ+ +N + ++PQ +++K+++++D ++ E A I + Sbjct: 61 RAIEETNRRRVKQIAYNTERGVDPQPLRKKVIDILDDLVRESAEGEVIGGGGRARSRGKV 120 Query: 754 ---SLSKKKGKAH--------------------LKSLRKQMHLAADNLNFEEAARIRDEI 790 +S K G+ ++ L QMH AA L FE AAR+RDEI Sbjct: 121 PAPGMSSKAGRDGAVGRHAAQLAGMPSADLAQLIRQLDDQMHEAAKELQFELAARLRDEI 180 Query: 791 KRLK 794 LK Sbjct: 181 AELK 184 >gi|289811031|ref|ZP_06541660.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 97 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/85 (78%), Positives = 77/85 (90%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+T LTKRMAEDLTEYL E RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLR Sbjct: 12 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 71 Query: 644 EGLDIPECGLVAILDADKEGFLRSK 668 EGLD+PE LVAILDADKEGFLRS+ Sbjct: 72 EGLDMPEVSLVAILDADKEGFLRSE 96 >gi|1149714|emb|CAA60243.1| uvrB [Clostridium perfringens] Length = 87 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 58/87 (66%), Positives = 74/87 (85%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 + L +FK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RHSAT + Sbjct: 1 GSALIVKFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSA 60 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQ 292 LLER D I+V+SVSCIYG+G+ E Y + Sbjct: 61 LLERRDVIIVASVSCIYGLGNPEEYKK 87 >gi|167957442|ref|ZP_02544516.1| excinuclease ABC, B subunit [candidate division TM7 single-cell isolate TM7c] Length = 89 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/89 (65%), Positives = 71/89 (79%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 MA +I Q P +V+A NK LAAQLYSEFK FFP N V YFVSY+DYYQPEAY+ +DTY Sbjct: 1 MANIIANYQAPTLVLAHNKTLAAQLYSEFKQFFPENEVHYFVSYFDYYQPEAYIASSDTY 60 Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCI 273 IEK+S IN++IDR+RH+AT +LL R+D I Sbjct: 61 IEKDSKINDEIDRLRHAATTALLTRSDTI 89 >gi|167759752|ref|ZP_02431879.1| hypothetical protein CLOSCI_02113 [Clostridium scindens ATCC 35704] gi|167662619|gb|EDS06749.1| hypothetical protein CLOSCI_02113 [Clostridium scindens ATCC 35704] Length = 111 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 60/108 (55%), Positives = 76/108 (70%) Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 K+W + N ++ F++Q Y P+GDQP AIA+L+KG + Q LLGVTGSG Sbjct: 4 KMWLILNVSKVTNGGFNMPEFKLQAPYQPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSG 63 Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 KTFTMA VI+ +Q+P +V+A NK LAAQLY EFK FP+NAVEYFVSY Sbjct: 64 KTFTMANVIQELQKPTLVIAHNKTLAAQLYGEFKEMFPNNAVEYFVSY 111 >gi|7650358|gb|AAF66010.1|AF228519_1 UvrB [Aliivibrio fischeri] Length = 165 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 16/161 (9%) Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706 D+PE LVAILDADKEGFLRS+ SLIQTIGRAARN+ K ILYAD IT S++ AI ET R Sbjct: 1 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITGSMEKAIGETER 60 Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK--KKGKAH- 763 RREKQ HN+ I PQ++K+ + ++++ L D + A ++ LS+ ++G ++ Sbjct: 61 RREKQQLHNEALGIVPQALKKDVADILE---LGDMTKNKRKVVAPKIKLSEVAEEGASYS 117 Query: 764 ----------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 ++ L +M+ A +L FE+AA++RDEI L+ Sbjct: 118 AMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQVRDEIDNLR 158 >gi|403956|gb|AAB01010.1| Homology to GenBank Accession Number M80215, uvrB [Mycoplasma genitalium] Length = 115 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 64/114 (56%), Positives = 84/114 (73%) Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606 Q++RPT LVDP + ++ TQVED+ +EI Q R +TVLT +MAE+LTEYL ER Sbjct: 1 QLVRPTYLVDPIIVVKPKITQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERK 60 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 I+V Y+H ++K LER+ +I DLR G+++ LVGINLLREGLD+PE LV I DAD Sbjct: 61 IKVAYIHKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDAD 114 >gi|266621880|ref|ZP_06114815.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479] gi|288866412|gb|EFC98710.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479] Length = 104 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 56/90 (62%), Positives = 71/90 (78%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L+KG + + LLGVTGSGKTFTMA VI+ +Q+P +++A Sbjct: 3 FKLHSEYQPTGDQPQAIEALVKGFKEGSQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 NK LAAQLYSEFK FFP NAVEYFVSYY+ Sbjct: 63 HNKTLAAQLYSEFKEFFPENAVEYFVSYYE 92 >gi|167771501|ref|ZP_02443554.1| hypothetical protein ANACOL_02871 [Anaerotruncus colihominis DSM 17241] gi|167666141|gb|EDS10271.1| hypothetical protein ANACOL_02871 [Anaerotruncus colihominis DSM 17241] Length = 109 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 55/91 (60%), Positives = 68/91 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ + + P+GDQP AI +L GI + Q LLGVTGSGKTFTMA +IE + RP +++A Sbjct: 9 FKLVSPFKPTGDQPEAIEKLTHGILAGAHEQTLLGVTGSGKTFTMANIIERVNRPTLILA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 NK LAAQL SEF+ FFP NAVEYFVSYY Y Sbjct: 69 HNKTLAAQLCSEFREFFPENAVEYFVSYYHY 99 >gi|15644499|ref|NP_229551.1| excinuclease ABC, subunit B-related protein [Thermotoga maritima MSB8] gi|4982331|gb|AAD36818.1|AE001813_10 excinuclease ABC, subunit B-related protein [Thermotoga maritima MSB8] Length = 99 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/86 (66%), Positives = 69/86 (80%) Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 G+NLLREGLD+ E VAI+DAD EGFLRS+T+LIQ IGR ARNVN KVI+YAD IT ++ Sbjct: 12 GVNLLREGLDLLEVSPVAIMDADVEGFLRSETTLIQIIGRTARNVNGKVIMYADRITNAM 71 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQ 723 + AI+ET RRR QLE+N+KH I Q Sbjct: 72 KRAIEETNRRRRIQLEYNRKHGITLQ 97 >gi|153854537|ref|ZP_01995807.1| hypothetical protein DORLON_01802 [Dorea longicatena DSM 13814] gi|149752846|gb|EDM62777.1| hypothetical protein DORLON_01802 [Dorea longicatena DSM 13814] Length = 95 Score = 117 bits (294), Expect = 6e-24, Method: Composition-based stats. Identities = 55/87 (63%), Positives = 67/87 (77%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F+++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A Sbjct: 9 FKLKAPYEPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 68 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVS 227 NK LAAQLY EFK FP NAVEYFVS Sbjct: 69 HNKTLAAQLYGEFKEMFPDNAVEYFVS 95 >gi|197302480|ref|ZP_03167535.1| hypothetical protein RUMLAC_01208 [Ruminococcus lactaris ATCC 29176] gi|197298378|gb|EDY32923.1| hypothetical protein RUMLAC_01208 [Ruminococcus lactaris ATCC 29176] Length = 90 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 52/87 (59%), Positives = 67/87 (77%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL++G + Q LLGVTGSGKTFTMA VI+ + +P +++A Sbjct: 4 FKLVSEYSPTGDQPQAIEQLVQGFKEGNQCQTLLGVTGSGKTFTMANVIQELNKPTLIIA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVS 227 NK LA QLY EFK FFP+NAVEYFVS Sbjct: 64 HNKTLAVQLYGEFKEFFPNNAVEYFVS 90 >gi|166030531|ref|ZP_02233360.1| hypothetical protein DORFOR_00192 [Dorea formicigenerans ATCC 27755] gi|166029693|gb|EDR48450.1| hypothetical protein DORFOR_00192 [Dorea formicigenerans ATCC 27755] Length = 102 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 54/89 (60%), Positives = 67/89 (75%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 ++ ++ Y P+GDQP AIA+L+KG + Q LLGVTGSGKTFTMA VI+ +Q+P +V Sbjct: 14 SYLLIKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLV 73 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 +A NK LAAQLY EFK FP NAVEYFVS Sbjct: 74 IAHNKTLAAQLYGEFKEMFPDNAVEYFVS 102 >gi|291520738|emb|CBK79031.1| Helicase subunit of the DNA excision repair complex [Coprococcus catus GD/7] Length = 90 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 52/87 (59%), Positives = 66/87 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI QL+KG + + LLGVTGSGKTFTMA VI + +P +++A Sbjct: 4 FELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIARLNKPTLILA 63 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVS 227 NK LAAQLY E K FFP+NAVEYFVS Sbjct: 64 HNKTLAAQLYGEMKEFFPNNAVEYFVS 90 >gi|10047453|gb|AAG12250.1|AF204056_1 uvrABC excinuclease subunit B [Agrobacterium tumefaciens str. C58] Length = 71 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 52/71 (73%), Positives = 63/71 (88%) Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APN Sbjct: 1 MDSEYQPAGDQPTAIADLVEGINSGERTQVLLGVTGSGKTFTMAKVIEATQRPAVILAPN 60 Query: 203 KILAAQLYSEF 213 K LAAQLYSEF Sbjct: 61 KTLAAQLYSEF 71 >gi|167946342|ref|ZP_02533416.1| excinuclease ABC subunit B [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 77 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/66 (77%), Positives = 56/66 (84%) Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 INLLREGLD+PE LVAILDADKEGFLRS +LIQTIGR+ARN N K ILYAD IT S++ Sbjct: 2 INLLREGLDMPEVSLVAILDADKEGFLRSVGALIQTIGRSARNANGKAILYADEITGSMR 61 Query: 699 LAIDET 704 AIDET Sbjct: 62 RAIDET 67 >gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum ATCC 824] gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase ) [Clostridium acetobutylicum ATCC 824] gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase ) [Clostridium acetobutylicum EA 2018] Length = 1171 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 123/509 (24%), Positives = 222/509 (43%), Gaps = 62/509 (12%) Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 I S E L G++ SGK++ ++ + E + P +V+ + A ++Y + F +V Sbjct: 23 IKSNEFPMELSGISESGKSYLISGLYEELDNPFLVITDSDSEAKKIYEDL--LFYTQSV- 79 Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 YY P V + Y +++ + R R ++ R I+V+SV + Sbjct: 80 -------YYLPTKEVVFYNIY-----AVSGDLRWERLKVIRKMMSRGKKIIVTSVENLAA 127 Query: 284 IG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 + VE Y + +L +GD+VE KEL LV+ Y+ + +G F + G ++I+ S Sbjct: 128 VYLPVELYKEYTFKLTLGDTVEAKELQKKLVQCGYEHVESVDAKGQFSIRGGIVDIY-SP 186 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 ++DV +R+ FG++IE I F + + I V I+++ + LN + IK+E Sbjct: 187 IDDVPYRIEFFGDEIESIRSFNTESQRSIEKVNKIEVFPAKEIILTDEALNKGYEAIKDE 246 Query: 403 LKMRLIELEKEGRLLEA-QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 L L L +G E+ +L++ + Y+LE L+ ++I+ + Y + + Sbjct: 247 LNQSLDRL--KGNNEESYNKLKETMEYNLEALKERAGFETIDTFIPYFY-----DNTSSF 299 Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 F+Y+ ++S++FVD +I +Y E G LP Sbjct: 300 FDYL-KNSIIFVDNYERCKGKIDSVYCEFEQNYENFLERGDILP---------------- 342 Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRP------TGLVDPPVEIRSARTQVEDVYDEI 575 + I+VS L+ + I +E I R TG+ + + S + Q++ + ++I Sbjct: 343 KQGNIIVSKENIYEILKTEKRINLESIGRAANNNFRTGIAFEEITLSSYQGQMDLLINDI 402 Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 ++ R ++ TK + L E L +R I Y S I ++ G+ + Sbjct: 403 KELKEEKYRTVILCGTKSKGQRLVETLGDRGIESVYKDS----------ILNVDYGEVVI 452 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGF 664 G L G PE L I +DKE F Sbjct: 453 SPGSQL--RGFRYPEIRLCVI--SDKEIF 477 Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K MA +L + + E I + + + LE++ I D G +D+L+ ++ G+DI Sbjct: 848 KEMAANLGKLIPEARIAIAHGQMSERELEKVMI--DFMEGNYDILLCTTIIETGIDIQNV 905 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + I +ADK G + L Q GR R Sbjct: 906 NTLIIYNADKMGL----SQLYQLRGRVGR 930 >gi|329577602|gb|EGG59035.1| conserved domain protein [Enterococcus faecalis TX1467] Length = 88 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 59/78 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQPAAIA+L+ G+ EK Q+LLG TG+GKTFT++ VI+ + +P +V+A Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69 Query: 201 PNKILAAQLYSEFKNFFP 218 NK LA QLY EFK FFP Sbjct: 70 HNKTLAGQLYGEFKEFFP 87 >gi|328465651|gb|EGF36870.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462] Length = 116 Score = 99.8 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 1/117 (0%) Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 +N++ID++RHSAT +LLERND IVV+SVS I+G+G Y ++ L+ G ++++ LL Sbjct: 1 MNDEIDKLRHSATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLR 60 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 LV Q+ R DI RG FRV GD +EIFP+ + FG++I+ I+E LT Sbjct: 61 QLVDIQFDRNDIDFQRGRFRVRGDVVEIFPAS-RVITPSALNFGDEIDRITEVDALT 116 >gi|289810193|ref|ZP_06540822.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 144 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 22/144 (15%) Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725 RS+ SLIQTIGRAARNVN K ILY D IT S+ AI ET RRREKQ ++N++H I PQ + Sbjct: 1 RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 60 Query: 726 KEKIMEVIDPILLEDAATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQ 770 +K+++++ A NI+ +L ++ K + + L +Q Sbjct: 61 NKKVVDIL-------ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQ 113 Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794 M A NL FEEAA+IRD++ +L+ Sbjct: 114 MMQHAQNLEFEEAAQIRDQLHQLR 137 >gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs] gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs] Length = 1174 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 61/336 (18%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 Q+ K I SR+ L G+ + K+ + + ++ ++ N++ A Q+Y + K + Sbjct: 18 QVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAG 77 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 A+ +Y EA +S N Q +RM+ A ++LE +DCIVV+++ Sbjct: 78 DRAIFLPSKEIMFYNMEA------------TSRNAQEERMK--AIETILEGSDCIVVTAI 123 Query: 279 SCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + S Y++ + ++GD+V+ ++++ +LV Q Y+R+DI RG F + GD I+ Sbjct: 124 DTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGDIID 183 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA---------------- 381 IFPS E + RV +FG++I+ I F P T + + +E +K+YA Sbjct: 184 IFPSSAE-MPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAVIL 242 Query: 382 --NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 N Y LN A KE LK L EL E L + G+ Sbjct: 243 KLNQDYKNISKKLNQAA---KENLKNSLEELS-------------------EKLRSLGNF 280 Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + +E Y+ E L Y +++L +DE Sbjct: 281 RGVEKLLPYIY-----EKTTCLLHYFKDNALFILDE 311 Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E +I+ + G++D+LV ++ G+DI + I DADK G Sbjct: 862 RVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGL--- 918 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 919 -SQLYQLRGRVGRS 931 >gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum BKT015925] gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum BKT015925] Length = 1169 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 107/526 (20%), Positives = 235/526 (44%), Gaps = 62/526 (11%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q ++K I E + G + SG+ + + + + RP + + + A LY + Sbjct: 12 QNNEFENIVKNIQKDEFPIDVTGFSESGRAYFIKGIYDNEDRPIFIFTNSDVEAKNLYED 71 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + P+ YY P V + Y +I+ + R R +L ++ Sbjct: 72 LSLYIPNV----------YYFPNKEVVFYNVY-----AISGDLRWERLKIIREMLRQDRK 116 Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IVV+S+ + S + Y + + + +GD ++ + L L++ Y+R I +G F V Sbjct: 117 IVVASIETLASTYISPKLYREYTINISVGDILDIEVLSEKLIQSGYQRTSIVEGKGEFSV 176 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G ++I+ S + + +R+ +FG++++ I F + + I ++++I+ V + + Sbjct: 177 RGGILDIY-SPISSIPFRIELFGDEVDSIRSFNTESQRSIEKYKSMEIFPAKELVLTKES 235 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 ++ +IK++L+ + L+++ +LE ++E+ +LE L+ + S ++++++ Y Sbjct: 236 IDKGYNFIKDDLEKVKVSLKEDKDILE--KIEKDTLANLESLKESWSFENMDSFMPYFY- 292 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511 E TL +Y+ E+ L+F+++ ++ ++ +Y + F ++N Sbjct: 293 ----ENSSTLLDYM-ENPLVFINDVQRSLGKLDTVY------------FEF-----IENY 330 Query: 512 PLRFEEWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRS 563 E+ N L R + ++VS ++ I + I + ++ P + + S Sbjct: 331 KHLLEKGNILSRQSELLVSKDELIQKITDSNIITLNVIYKERNILKPKHKESFEQIILNS 390 Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 +++ + +EIN Q G + L+ T+ E L E L + NI Y + Sbjct: 391 YGGKLDLLVEEINSKKQNGYKTLILSGTRPRGERLVEALRDYNIESVYK----------D 440 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 ++ D+ G+ + G + +G + P+ L I D D G R +T Sbjct: 441 VVDDIEFGEVAITFGNQM--KGFECPDLKLCVISDKDFFGKSRKRT 484 >gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR] gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR] Length = 1178 Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 148/325 (45%), Gaps = 22/325 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 + A L G+ Q++ G++G+ ++ +A +IE + PA++MAPN I A + + Sbjct: 12 ESAEFNSLTAGLKRGLAYQMVYGLSGAQNSYLIAGIIEKLNVPALIMAPNGIAAKKRLDD 71 Query: 213 FKNFFPHNAVEYFVSYYDYYQPE-AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 +NF P+ + Y+ PE +VP KE + R + L+++++ Sbjct: 72 LRNFLPNREILYY--------PELEHVPFGSIAQSKELAAQ------RLAVLAKLVQQDN 117 Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 I+V+ V +Y + + + + L +G + Q++++ + Q Y+R ++ G F Sbjct: 118 LIIVAPVEALYQQLIPRSVFEKFSLCLSVGQIISQEKMIEVFLAQGYERVEMVEGPGQFS 177 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 V G I+IFP E R+ +F ++I+ I EF + + + ++ IY V R Sbjct: 178 VRGGIIDIFPQTRER-PLRIELFDDEIDSIREFKVDSQRSLNRLQEAVIYPAVELVVERE 236 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 A I + L+K G+ +L+++ +E L + + +E Y Y Sbjct: 237 NFVKAADLIAADFAEHGKRLKKIGKYEAFNKLQEKTKEIIEKLRSGLYIEGMEYYFSYFY 296 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475 +L +Y+ ++LFV+E Sbjct: 297 PEG-----ASLLDYLDRKTVLFVEE 316 Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++K + +++ + G++DVL+ ++ GLDIP + + +AD+ G Sbjct: 868 RVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVDEADRMGL--- 924 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 925 -SQLYQLRGRVGRS 937 >gi|144897122|emb|CAM73986.1| Excinuclease ABC, B subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 185 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 7/121 (5%) Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 AARN++ +VILYAD +T S++ AIDET RRREKQ +N H I P+ +K+ + +V++ + Sbjct: 42 AARNIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAVGDVLESVY 101 Query: 738 LEDAATTNISIDAQQLSLSKKKGK--AHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLK 794 +D T +D L+ G A +K+ + K+M AA +L FEEAAR+RDE++RL+ Sbjct: 102 EKDYLT----VDTGDSGLAHGVGHNLAAVKADIEKRMKAAAADLEFEEAARLRDELRRLE 157 Query: 795 S 795 + Sbjct: 158 A 158 >gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis AR01/DG] gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG] Length = 1179 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSFWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855] gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855] gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012] Length = 1189 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704] gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704] Length = 1179 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3] gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3] Length = 1179 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635] gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635] gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645] gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630] Length = 1189 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137] Length = 1189 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF] Length = 1189 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104] gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104] Length = 1189 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKSDMNHGMMRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188] gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188] Length = 1179 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712] gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613] gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248] gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 512] gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 516] gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712] gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613] gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248] gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 512] gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO 516] gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017] gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027] gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244] Length = 1189 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6] gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6] Length = 1179 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G I+++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322] gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102] gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322] gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102] gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031] gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043] Length = 1189 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 29200] gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109] gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411] gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 29200] gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411] gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109] gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000] gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341] gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342] Length = 1189 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860] gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860] Length = 1189 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470] gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470] Length = 1189 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141] Length = 1189 Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str. 1873] gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str. 1873] Length = 1169 Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 110/527 (20%), Positives = 239/527 (45%), Gaps = 64/527 (12%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q ++K IH E + GV+ SG+ + + + + + +P + + + A LY + Sbjct: 12 QDNKFKNIVKNIHKNEFPIDVTGVSESGRAYFIKGIYDNIDKPIFIFTNSDVEAKNLYED 71 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + P NA YY P V + Y +I+ + R R +L+++ Sbjct: 72 LSLYIP-NA---------YYLPNKEVVFYNVY-----AISGDLRWERLKVIREMLKKDRK 116 Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IVV+S+ + S E Y + + + GD ++ +EL L++ Y+R +I +G F V Sbjct: 117 IVVASIETLASTYISPELYKEYTINISKGDILDIEELSEKLIQSGYQRTNIVEGKGEFSV 176 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G ++I+ S + + +R+ +FG++++ I F + + I+ + ++I+ + + + Sbjct: 177 RGGILDIY-SPISSIPFRIELFGDEVDSIRSFNTESQRSIKKYKAMEIFPAKELILTKES 235 Query: 392 LNTAMKYIKEEL-KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 ++ I+++L K+++ L+ E L +++++ +LE L+ + + ++I+++ Y Sbjct: 236 IDKGYSSIRDDLEKIKVSLLDDEETL---EKIQKDTLDNLESLKESWNFENIDSFMPYFY 292 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510 E L +Y+ EDSL+F+++ + ++ +Y + F ++N Sbjct: 293 -----ENKSMLLDYM-EDSLVFINDLQRSFGKLDTVY------------FEF-----IEN 329 Query: 511 RPLRFEEWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIR 562 E+ N L R ++V ++ I + I + ++ P + + Sbjct: 330 YKHLLEKGNILSRQIELLVPKDELLQKIIDSNIITLNLIYKERDILKPKHKESFQQILLN 389 Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 S ++E + +EI++ Q+G + L+ T+ E L E L + NI Y Sbjct: 390 SYEGKLELLLEEISIKKQRGYKTLILSGTRPRGERLVETLRDYNIESVYK---------- 439 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 +I+ ++ G+ + G + +G + P+ L I D D G R +T Sbjct: 440 DIVDNIEFGEVVITFGNQI--KGFEYPDLKLCVISDKDFFGKSRKRT 484 >gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134] gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134] Length = 1189 Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8] gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8] Length = 1179 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1] gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98] gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1] gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98] gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62] Length = 1179 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5] gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96] gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol] gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1] gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD Ef11] gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5] gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96] gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol] gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1] gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD Ef11] Length = 1179 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302] Length = 1189 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLFTGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1] gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1] Length = 1179 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2] gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2] Length = 1179 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|329577443|gb|EGG58892.1| conserved domain protein [Enterococcus faecalis TX1467] Length = 542 Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 29/309 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286 D + E SS + DR+ SA L+ N IVV V+ + + + Sbjct: 92 ---------PVDEVLSAEMAFSSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPT 140 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 E++ + +IG VE + L LV Y+RQ + G F + G ++++P + E Sbjct: 141 KETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-Y 199 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 RV +F +I+ I F T + + N+E + I + V + +N M +++ L+ R Sbjct: 200 PVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKR 259 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 L + + E LE+ L E ++ Y+ +L + TL +Y+P Sbjct: 260 LATAKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLP 311 Query: 467 EDSLLFVDE 475 E+SLLFVD+ Sbjct: 312 ENSLLFVDD 320 >gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312] Length = 1189 Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QLKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 4200] gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC 4200] Length = 1179 Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1] gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1] Length = 1179 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346] Length = 1189 Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT] gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT] Length = 1170 Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 103/492 (20%), Positives = 220/492 (44%), Gaps = 46/492 (9%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + G++ SG+ + + + E + + + + A LY + + P+ YY Sbjct: 32 ITGLSESGRAYFINGIYEQEDKSIFIFTNSDVEAKNLYEDLSLYVPNV----------YY 81 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYS 291 P V + Y +I+ + R R +L++ ++V+S+ + S E Y Sbjct: 82 FPNKEVVFYNVY-----AISGDLRWERLKVIREMLKKGKKVIVASIETLASTYISPELYK 136 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + +++ +GD ++ +EL L++ Y+R I +G F + G I+++ S + V +R+ Sbjct: 137 KYTLKVSVGDVIDIEELSEKLIQGGYQRTSIVEGKGEFSIRGGIIDVY-SPISSVPYRIE 195 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +FG++++ I F + + I ++I+I+ + + ++ IKE+L+ +L Sbjct: 196 LFGDEVDSIRSFNTESQRSIEKSKSIEIFPAKEMILTKENIDMGYNSIKEDLQKAKEKLV 255 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 + LL+ LE+ +LE L+ T S ++I++++ Y E TL +Y+ DSL+ Sbjct: 256 DDRELLD--NLEKNTISNLESLKETWSFENIDSFTPYFY-----ENTATLLDYM-NDSLV 307 Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531 FV + ++ ++ +Y L E G L ++ + + ++ + I V+ Sbjct: 308 FVTDVQRSLGKLDTVYFEFIENYKQLLERGTILSKQLELLVSKEDILEKIQKSNI-VTLN 366 Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591 S E++ + E + + S +++ + +EIN QG +IL+ T Sbjct: 367 IISKEMDVLKSKHKESFNQTI--------LNSFGGKLDFLIEEINSKKSQGYKILILSGT 418 Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 + E L + L + +I Y +++ ++ G +V++ +G + PE Sbjct: 419 RPRGERLVDALRDYDIESAYK----------DVVDNIEFG--EVVITFGNQSKGFEYPEL 466 Query: 652 GLVAILDADKEG 663 L I D D G Sbjct: 467 KLCVISDKDFFG 478 >gi|328465671|gb|EGF36887.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462] Length = 140 Score = 90.9 bits (224), Expect = 8e-16, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + + Y P+GDQP AIA+L KG +K Q+LLG TG+GKTFTM+ +I + +P ++++ Sbjct: 39 FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 98 Query: 201 PNKILAAQLYSEFKNF 216 NK LA QLY EFK F Sbjct: 99 HNKTLAGQLYGEFKEF 114 >gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583] gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22] gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583] gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22] gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B] gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A] Length = 1189 Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 37 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 92 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 144 WQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 315 LLFVDD 320 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 925 ---STLYQLRGRVGRS 937 >gi|207110335|ref|ZP_03244497.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1] Length = 112 Score = 90.5 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 74/111 (66%) Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 +SSIN+ ++R+R SAT SLL +D IV++SVS YG+G+ E Y +++ ++K+G+ K Sbjct: 1 DSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKS 60 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358 L LV+ Y R ++ RG+FR G+ ++IFP++ + R+ FG++IE Sbjct: 61 FLLKLVEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIE 111 >gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11] gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11] Length = 1179 Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS KT MA ++ + ++ PN A QL +F N P V F Sbjct: 27 QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + SS + DR+ SA L+ N IVV V+ + + + E+ Sbjct: 82 ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +IG VE + L LV Y+RQ + G F + G ++++P + E R Sbjct: 134 WQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 V +F +I+ I F T + + N+E + I + V + +N M +++ L+ RL Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + E LE+ L E ++ Y+ +L + TL +Y+PE+S Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304 Query: 470 LLFVDE 475 LLFVD+ Sbjct: 305 LLFVDD 310 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 ---STLYQLRGRVGRS 927 >gi|324556807|gb|ADY49814.1| UvrABC system protein B [Ascaris suum] Length = 65 Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 38/65 (58%), Positives = 47/65 (72%) Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491 M+ G C IENY+RY+TG+ GEPP TL ++ +D LL VDESHVT+PQI GMY GD Sbjct: 1 MMNELGYCNGIENYTRYMTGKKKGEPPYTLLDFFGDDWLLVVDESHVTLPQIRGMYEGDH 60 Query: 492 HRKAT 496 +RK T Sbjct: 61 NRKQT 65 >gi|207109633|ref|ZP_03243795.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1] Length = 109 Score = 88.6 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 40/79 (50%), Positives = 54/79 (68%) Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197 + F +++ Y P+GDQP AI L K + + Q L+GVTGSGKT+TMA +I +PA+ Sbjct: 1 MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60 Query: 198 VMAPNKILAAQLYSEFKNF 216 +M+ NK L AQLYSEFK F Sbjct: 61 IMSHNKTLCAQLYSEFKAF 79 >gi|207110368|ref|ZP_03244530.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1] Length = 107 Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 64/96 (66%) Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572 L+F+E+ + VSATP ELE + + EQIIRPTGL+DP E+R + QV+D++ Sbjct: 1 LKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLF 60 Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608 DEI L +G R+L+T LTK+MAE+L +Y E ++ Sbjct: 61 DEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLK 96 >gi|225734143|pdb|3FPN|B Chain B, Crystal Structure Of Uvra-Uvrb Interaction Domains Length = 106 Score = 88.2 bits (217), Expect = 6e-15, Method: Composition-based stats. Identities = 45/103 (43%), Positives = 64/103 (62%) Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343 +GS E Y +++V L++G +E+ LL LV QY R DI RGTFRV GD +EIFP+ Sbjct: 4 MGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASR 63 Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 ++ RV FG++IE I E LTG+ + E + I+ SH+V Sbjct: 64 DEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFV 106 >gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C str. JGS1495] gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C str. JGS1495] Length = 1168 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/336 (21%), Positives = 152/336 (45%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 16 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 60 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL E EK+ E +RL + I ++E L+ S Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----EFEKKVSDKEIKERLRKLIERNIESLQENWS 279 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310 >gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA] gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA] Length = 1169 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 105/501 (20%), Positives = 216/501 (43%), Gaps = 54/501 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK++ + ++ E++ P I++ + + A +Y + F N + YF Sbjct: 34 GLSDSGKSYGVFEIYESIDSPMIILTHSDMEAKNIYEDLS--FYTNDIYYF--------- 82 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-VESYSQM 293 P + +I+ + R + +L+ + I+V+S+ + + + E + + Sbjct: 83 ----PAKEVVFYNIDAISGDLRWARLKVIKEILDNKNKIIVTSIDTLTSVYTPKELFREY 138 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 +L + D V K+L L++ Y+R + +G F + G +++FP + +R+ +F Sbjct: 139 TFKLSVDDDVNFKDLSKKLLESGYERVEAVEGKGEFSLRGGILDVFPP-IATYPYRIELF 197 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 G+ IE I F + + I V+ I+I+ + LN + I +E + I+ + + Sbjct: 198 GDSIESIRTFNKESQRSIEKVDNIEIFPAKEIILNEEALNRGKEAILKEFQE--IKSKAK 255 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 G Q+LE I+ ++E L T + +++++Y Y + + F Y+ +D + + Sbjct: 256 GNDERIQKLESIISANIESLTETLTFETLDSYLPYFYDKT-----DSFFSYV-KDYMYVI 309 Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLRFEEWNCLRPTTIVVSA 530 D+ ++ Y + G LPS + N+ E+ + T+ V A Sbjct: 310 DDVKKCEGKLESCYFEFSENYEAFLQRGGILPSQSKLLLNKDDLIEKLESQKSITLDVFA 369 Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTV 589 I +I+ P + S + Q++ + D+I +G + ++ Sbjct: 370 -------------INSKILNPIERYSFNASTLNSYQGQLDLLIDDIKEKKSKGYKTIILS 416 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+ E L L +R I Y ++K++E E++ + G NLL+ G + P Sbjct: 417 GTRTRGERLVNTLRDRKIESSY-REDIKSIEFGEVV--ITFG--------NLLK-GFEYP 464 Query: 650 ECGLVAILDADKEGFLRSKTS 670 + L I D D G + K S Sbjct: 465 DLKLCVISDKDVFGEAKRKIS 485 >gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str. 13] gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str. 13] Length = 1162 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/336 (21%), Positives = 152/336 (45%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 10 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 53 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 54 HNDIEARNIYEDLSFYLPNVY---------------YLPSREIVFYNIDAISGDLRWARL 98 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 99 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 158 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 159 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 217 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL E EK+ E +RL + I ++E L+ S Sbjct: 218 FPAKEVILSKETIEHAIEKMRKELS----EFEKKVSDKEIKERLRKLIERNIESLQENWS 273 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 274 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 304 >gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum IAM 14863] gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum IAM 14863] Length = 1243 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 15/250 (6%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A + L G+ Q++ GV GS K+ +A + E RPA+V+ A Q + + Sbjct: 14 AEFSSLYDGMRRGFAEQMVYGVAGSLKSAFLAALRERTGRPALVITATIQQAEQFREDLE 73 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 + P V F P Y+P E + E I + R S L IV Sbjct: 74 TWLPGQDVALF-------PPMEYLP-----FEVMAHSPEVIGQ-RLSVLERLARGESLIV 120 Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V+ + +Y G+ + + ++ L+ G ++ + EL++ LV+Q Y+R D+ +G V G Sbjct: 121 VAPAAALYRGLTPSAVFRRSLLTLRPGQAIGRDELVARLVRQGYERVDMVESKGHVAVRG 180 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 + +++FP E RV+ +G++IEEI F P T + + V+ + + ++ P L Sbjct: 181 EIVDLFPLAAE-YPLRVAFWGDEIEEIRRFDPATQRTVEQVDALSVGPAREFILPEDGLE 239 Query: 394 TAMKYIKEEL 403 A+ I+ +L Sbjct: 240 PAIARIRRDL 249 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 608 RVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 R+ H ++ +R+E I+ D G++DVLV ++ G+D+P+ + + DAD G Sbjct: 925 RIAVAHGQMSE-DRLEKIVLDFMDGEYDVLVATTIIENGIDMPQVNTIIVEDADHLGL-- 981 Query: 667 SKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 982 --SQLYQLRGRVGRS 994 >gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1174 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 17/251 (6%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L G+ GS KT +AK+++ + P +++ + A QL S+ +N +E F Sbjct: 26 HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289 P D + + ++ + + R SA +L N IV+++V+ I + SVE Sbjct: 81 --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q +QL+IG V+ EL L + Y R ++ G F + G ++IFP D +R Sbjct: 133 WKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + F +I+ + F + I NVE + I + ++ + L A + IK+E + + Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVEQVTIIPATDFIASKEVLELASEKIKKEYNKQFSK 251 Query: 410 LE--KEGRLLE 418 L+ KE +L E Sbjct: 252 LKNTKEEKLTE 262 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V Y+H + + I+ D G++DVLV ++ G+DIP + + +AD++G Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRKGL--- 912 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 913 -SQLYQLRGRVGR---SNRIAYA 931 >gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555] gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555] Length = 1173 Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 108/515 (20%), Positives = 223/515 (43%), Gaps = 56/515 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ GI ++ + G++ S +++ + V +P +++ + + A +LY + + P Sbjct: 19 IMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ 78 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 V YF P + +I+ + R R +L I+++ V Sbjct: 79 --VYYF-------------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIITCVE 123 Query: 280 CIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + VE Y I ++ +GD V+ K + L++ Y+R ++ RG F + G ++I Sbjct: 124 SLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGIMDI 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 + S + +RV +FG+++E I F + + I + I+I+A + R + Sbjct: 184 Y-SPISQEPYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIGKSK 242 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRIT-YDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IKE+L +IE KE + E + IT +LE L+ T + +SI+++ Y E Sbjct: 243 IKEDL-ASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY-----EH 296 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLR 514 + +Y ++ + VD+ ++ +Y E G LP + +R Sbjct: 297 TSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRSEL 355 Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYD 573 +E+N I++ A S +I+ P +V+ + + + + ++E + + Sbjct: 356 IDEFN--HREIIILDAIAKS-----------TKILPPKLIVNFTQITLNNYQGKLELLIE 402 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 EI + +IL+ T+ E L + L + I Y +++ +++ G+ Sbjct: 403 EIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSYR----------DVVNEIKPGEV 452 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + G L +G + PE + I +DKE F ++K Sbjct: 453 VITFGNQL--KGFEYPEIKISVI--SDKEVFGKAK 483 Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V H +++ E II D K+D+LV ++ G+DI + I DADK G Sbjct: 864 KVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGL--- 920 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 921 -SQLYQLRGRVGR 932 >gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016] gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1183 Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 108/515 (20%), Positives = 223/515 (43%), Gaps = 56/515 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ GI ++ + G++ S +++ + V +P +++ + + A +LY + + P Sbjct: 29 IMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ 88 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 V YF P + +I+ + R R +L I+++ V Sbjct: 89 --VYYF-------------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIITCVE 133 Query: 280 CIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + VE Y I ++ +GD V+ K + L++ Y+R ++ RG F + G ++I Sbjct: 134 SLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGIMDI 193 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 + S + +RV +FG+++E I F + + I + I+I+A + R + Sbjct: 194 Y-SPISQEPYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIGKSK 252 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRIT-YDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 IKE+L +IE KE + E + IT +LE L+ T + +SI+++ Y E Sbjct: 253 IKEDL-ASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY-----EH 306 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLR 514 + +Y ++ + VD+ ++ +Y E G LP + +R Sbjct: 307 TSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRSEL 365 Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYD 573 +E+N I++ A S +I+ P +V+ + + + + ++E + + Sbjct: 366 IDEFN--HREIIILDAIAKS-----------TKILPPKLIVNFTQITLNNYQGKLELLIE 412 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 EI + +IL+ T+ E L + L + I Y +++ +++ G+ Sbjct: 413 EIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSYR----------DVVNEIKPGEV 462 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + G L +G + PE + I +DKE F ++K Sbjct: 463 VITFGNQL--KGFEYPEIKISVI--SDKEVFGKAK 493 Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V H +++ E II D K+D+LV ++ G+DI + I DADK G Sbjct: 874 KVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGL--- 930 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 931 -SQLYQLRGRVGR 942 >gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC 8239] gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC 8239] Length = 1168 Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 16 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 60 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL + E + E +RL + I ++E L+ S Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310 >gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B str. ATCC 3626] gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E str. JGS1987] gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E str. JGS1987] gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B str. ATCC 3626] Length = 1168 Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 16 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 60 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL + E + E +RL + I ++E L+ S Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310 >gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE str. F4969] gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE str. F4969] Length = 1168 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 16 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 60 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL + E + E +RL + I ++E L+ S Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310 >gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC 13124] gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC 13124] Length = 1162 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 10 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 53 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 54 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 98 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 99 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 158 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 159 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 217 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL + E + E +RL + I ++E L+ S Sbjct: 218 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 273 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 274 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 304 >gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC 11741] gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC 11741] Length = 1174 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 17/251 (6%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L G+ GS KT +AK+++ + P +++ + A QL S+ +N +E F Sbjct: 26 HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289 P D + + ++ + + R SA +L N IV+++V+ I + SVE Sbjct: 81 --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q +QL+IG V+ EL L + Y R ++ G F + G ++IFP D +R Sbjct: 133 WKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + F +I+ + F + I NV+ + I + ++ + L A + IK+E + + Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASERIKKEYNKQFSK 251 Query: 410 LE--KEGRLLE 418 L+ KE +L E Sbjct: 252 LKNIKEEKLTE 262 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V Y+H + + I+ D G++DVLV ++ G+DIP + + +AD+ G Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGL--- 912 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 913 -SQLYQLRGRVGR---SNRIAYA 931 >gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius UCC118] gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius UCC118] Length = 1174 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 17/251 (6%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L G+ GS KT +AK+++ + P +++ + A QL S+ +N +E F Sbjct: 26 HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289 P D + + ++ + + R SA +L N IV+++V+ I + SVE Sbjct: 81 --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q +QL+IG V+ EL L + Y R ++ G F + G ++IFP D +R Sbjct: 133 WKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + F +I+ + F + I NV+ + I + ++ + L A + IK+E + + Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASERIKKEYNKQFSK 251 Query: 410 LE--KEGRLLE 418 L+ KE +L E Sbjct: 252 LKNIKEEKLTE 262 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V Y+H + + I+ D G++DVLV ++ G+DIP + + +AD+ G Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGL--- 912 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 913 -SQLYQLRGRVGR---SNRIAYA 931 >gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM 2360] gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM 2360] gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM 1313] Length = 1178 Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 111/526 (21%), Positives = 220/526 (41%), Gaps = 62/526 (11%) Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I +A N++ A +++ + FF +AV + P + D + SI E+I Sbjct: 59 GIYIAYNEMQARKMFEDVSFFFGKDAV---------FFPSKEIMLHDVEAKSYDSIYERI 109 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + + R + + IV S+ + + + + + IV + +GD ++ LV Sbjct: 110 NAL----YRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSI 165 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+R + F V G ++IFP + D A R+ +F ++++ + F +T + + N+E Sbjct: 166 GYERVTTVEGKSQFAVRGGIVDIFPVN-ADTAVRIELFDDEVDSVRSFDTMTQRSVENLE 224 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I + P ++ ++ I +LK+++ ++E + Q+LE +I D+E Sbjct: 225 AVTILPARELIYPPGLRDSIVEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQ 284 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 ++ Y Y+ E P + +YI + L+FVDE +I + Sbjct: 285 EYYFAGMDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCK 339 Query: 496 TLAEYGFRLPSCMDNRPLRFE---EWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550 + E G L D + F+ W+ ++ T+ + P E + IV ++ Sbjct: 340 SFMENGQLLAGSFD---IFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKL-- 394 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 + S + +E + ++I+ + G R+++ TK E L E L ++I Sbjct: 395 ----------LNSYQGHLEILEEDISHWKKNGARVVILSGTKSRGEMLAETLRTKDIEAV 444 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+ E RD++ G +V++ +L G + P G V + + KE F + K + Sbjct: 445 YLE---------EPHRDIQPG--EVVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT 491 Query: 671 LIQTIGRAAR-------NVNSKVILYADTITKSI---QLAIDETTR 706 + + NV V+ Y I K I QL ++ + Sbjct: 492 RRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK 537 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E I+ G++D+LV ++ GLD+P + + DADK G Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGL--- 924 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 925 -AQLYQLRGRVGRS 937 >gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum JW20] gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum JW20] Length = 1178 Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 111/526 (21%), Positives = 220/526 (41%), Gaps = 62/526 (11%) Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I +A N++ A +++ + FF +AV + P + D + SI E+I Sbjct: 59 GIYIAYNEMQARKMFEDVSFFFGKDAV---------FFPSKEIMLHDVEAKSYDSIYERI 109 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + + R + + IV S+ + + + + + IV + +GD ++ LV Sbjct: 110 NAL----YRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSI 165 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+R + F V G ++IFP + D A R+ +F ++++ + F +T + + N+E Sbjct: 166 GYERVTTVEGKSQFAVRGGIVDIFPVN-ADTAVRIELFDDEVDSVRSFDTMTQRSVENLE 224 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I + P ++ ++ I +LK+++ ++E + Q+LE +I D+E Sbjct: 225 AVTILPARELIYPPGLRDSIVEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQ 284 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 ++ Y Y+ E P + +YI + L+FVDE +I + Sbjct: 285 EYYFAGMDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCK 339 Query: 496 TLAEYGFRLPSCMDNRPLRFE---EWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550 + E G L D + F+ W+ ++ T+ + P E + IV ++ Sbjct: 340 SFMENGQLLAGSFD---IFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKL-- 394 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 + S + +E + ++I+ + G R+++ TK E L E L ++I Sbjct: 395 ----------LNSYQGHLEILEEDISHWKKNGARVVILSGTKSRGEMLAETLRTKDIEAV 444 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+ E RD++ G +V++ +L G + P G V + + KE F + K + Sbjct: 445 YLE---------EPHRDIQPG--EVVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT 491 Query: 671 LIQTIGRAAR-------NVNSKVILYADTITKSI---QLAIDETTR 706 + + NV V+ Y I K I QL ++ + Sbjct: 492 RRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK 537 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E I+ G++D+LV ++ GLD+P + + DADK G Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGL--- 924 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 925 -AQLYQLRGRVGRS 937 >gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D str. JGS1721] gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D str. JGS1721] Length = 1168 Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/336 (20%), Positives = 151/336 (44%), Gaps = 43/336 (12%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 16 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 60 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ ++ Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEV 223 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438 + + + T+ A++ +++EL + E + E +RL + I ++E L+ S Sbjct: 224 FPAKEVILSKETIEHAVEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279 Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++I++Y + + P TLF+Y+ + + D Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310 >gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC 27405] gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC 27405] Length = 1178 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 111/526 (21%), Positives = 220/526 (41%), Gaps = 62/526 (11%) Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255 I +A N++ A +++ + FF +AV + P + D + SI E+I Sbjct: 59 GIYIAYNEMQARKMFEDVSFFFGKDAV---------FFPSKEIMLHDVEAKSYDSIYERI 109 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + + R + + IV S+ + + + + + IV + +GD ++ LV Sbjct: 110 NAL----YRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSI 165 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+R + F V G ++IFP + D A R+ +F ++++ + F +T + + N+E Sbjct: 166 GYERVTTVEGKSQFAVRGGIVDIFPVN-ADTAVRIELFDDEVDSVRSFDTMTQRSVENLE 224 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + I + P ++ M+ I +LK+++ ++E + Q+LE +I D+E Sbjct: 225 AVTILPARELIYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQ 284 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495 ++ Y Y+ E P + +YI + L+FVDE +I + Sbjct: 285 EYYFAGMDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCK 339 Query: 496 TLAEYGFRLPSCMDNRPLRFE---EWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550 + E G L D + F+ W+ ++ T+ + P E+ + IV ++ Sbjct: 340 SFMENGQLLAGSFD---IFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEEKRENIVSKL-- 394 Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 + S + +E + ++I+ + R+++ TK E L E L ++I Sbjct: 395 ----------LNSYQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAV 444 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 Y+ E RD++ G +V++ +L G + P G V + + KE F + K + Sbjct: 445 YLE---------EPHRDIQPG--EVVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT 491 Query: 671 LIQTIGRAAR-------NVNSKVILYADTITKSI---QLAIDETTR 706 + + NV V+ Y I K I QL ++ + Sbjct: 492 RRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK 537 Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E I+ G++D+LV ++ GLD+P + + DADK G Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGL--- 924 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 925 -AQLYQLRGRVGRS 937 >gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens SM101] gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens SM101] Length = 1162 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/338 (20%), Positives = 152/338 (44%), Gaps = 47/338 (13%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 FQ + SG+ P I G++ SGK++ + + E +P +V+ Sbjct: 10 FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 53 Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260 N I A +Y + + P+ Y+P + +I+ + R Sbjct: 54 HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 98 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +L I+V+S+ + E Y I+++K+GD V+ KE+ L++ Y+R Sbjct: 99 KVIKEMLRSTKKIIVTSIDAFVATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 158 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +G F + G +++FP + + +R+ +FG++++ I F + + I V+ +I Sbjct: 159 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 217 Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETT 436 + + + T+ A++ +++EL + E ++ + + +L + I ++E L+ Sbjct: 218 FPAKEVILSKETIEHAIEKMRKELS------DFENKVSDKEIKDKLRKLIEKNIESLQEN 271 Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 S ++I++Y + + P TLF+Y+ + + D Sbjct: 272 WSFETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 304 >gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium ljungdahlii DSM 13528] gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium ljungdahlii DSM 13528] Length = 1173 Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 96/520 (18%), Positives = 228/520 (43%), Gaps = 66/520 (12%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ GI ++ + G++ S K++ + V + +P +++ + + A +LY + + Sbjct: 19 IIDGISKKKFPIGVFGLSESAKSYLIYGVYNEIDKPFLIVTHSDVEARKLYEDLSLYLAE 78 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 V YF P + +I+ + R R +++ I+++ Sbjct: 79 --VYYF-------------PTKEMVFYNIDAISGDLRWERLKVIRKMIDTGRKIIIT--- 120 Query: 280 CIYGIGS----VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 C+ + S V Y I+ + +G+++ K++ LV+ Y++ +I +G F + GD Sbjct: 121 CVESLASAYIPVGLYENYIINISVGEALNLKDISEKLVQSGYEKNEIVDSKGQFSIRGDI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++++ S + A+R+ +FG+++E I + + I +++I+I+ + + + Sbjct: 181 MDVY-SPIAAEAYRIELFGDEVESIRTLNLESQRSIDKLDSIEIFPAKEIILDKDKIQKG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 K I+++ + +LEK R+++ +LE LE S ++I+++ Y + Sbjct: 240 RKSIEDDAALVEKKLEKSKNKEALDRIDELTKKNLESLEENWSFENIDSFLPYFYDK--- 296 Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515 P + +Y +D + +D+ ++ +Y L E G LP Sbjct: 297 --PASFLDY-AKDYFVVMDDVQRCSGKLDSVYFEFEENYKNLLERGNILP---------- 343 Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRSARTQV 568 + + ++ + + EL+ + + ++ I + + ++ P + + S + Q+ Sbjct: 344 ------KQSKMLCAKSDLFEELKNKEIMTLDAIAKSSKVIQPKTITNFSQITLNSYQGQI 397 Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 + + ++I +G +IL+ T+ E L + L E+ I Y ++I ++ Sbjct: 398 DLLIEDIKDKKSRGYKILILSGTRPRGERLVDTLREKGIESSYR----------DVIHEI 447 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + G+ + G L +G + P+ L I +DKE F +K Sbjct: 448 KSGEVVITFGSQL--KGFEYPDFKLGVI--SDKEVFGEAK 483 Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K MA + + + E + V H +++ E II D +++VLV ++ G+DI Sbjct: 850 KEMASYIAKLIPEAKVAV--AHGQMQERELENIIVDFMKNEYNVLVATTIIETGMDIQNV 907 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + I DADK G + L Q GR R Sbjct: 908 NTMIIYDADKMGL----SQLYQLRGRVGR 932 >gi|300214982|gb|ADJ79398.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT 5713] Length = 251 Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 15/234 (6%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L G+ GS KT +AK+++ + P +++ + A QL S+ +N +E F Sbjct: 26 HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289 P D + + ++ + + R SA +L N IV+++V+ I + SVE Sbjct: 81 --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q +QL+IG V EL L + Y R ++ G F + G ++IFP D +R Sbjct: 133 WKQHEIQLEIGKEVNPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 + F +I+ + F + I NV+ + I + ++ + L A K IK+ + Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASKKIKKNI 245 >gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579] gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579] Length = 1172 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 32/335 (9%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G+ SGK + ++ + + + ++ + + A ++Y + + YY P Sbjct: 38 GLADSGKNYFISSIFANVDKSLVIFTHSDVEARRIYEDLSLYTTEV----------YYLP 87 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI +G+ E Y Sbjct: 88 TKEVVFYNIY-----AISGDLRWERLKVINEVLSTKKKIIVT---CIESLGATYIPKELY 139 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + ++ +GD +E K L LVK Y+R DI +G F V G I+I+P + +R+ Sbjct: 140 IKYTFKMSVGDIIETKSLEEKLVKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 198 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++++ I F + + I V +I I+ + +N +K IK +L + L Sbjct: 199 EFFGDEVDSIRNFNVNSQRSIEKVNSISIFPAKEIILEEENINLGLKNIKADLDKLVGNL 258 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI EDS Sbjct: 259 SKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYTKT-----NSLLDYI-EDSF 309 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505 + +D+ + ++ Y E G+ LP Sbjct: 310 IVIDDVKRCLGKLDSTYLEFNEDYDKFLEKGYILP 344 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+LV ++ G+DI + I DADK G Sbjct: 865 RVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDADKMGL--- 921 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 922 -SQLYQLRGRVGR 933 >gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911] gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911] Length = 1179 Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 83/333 (24%), Positives = 146/333 (43%), Gaps = 49/333 (14%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G++ K QL+ G+TGS +T +A + E ++P +V+ N + A +LY + N Sbjct: 14 IKTVITGVNGGLKEQLVAGLTGSARTLFLASIYEQTKKPMLVVTHNLLQAQKLYDDIVNL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + V Y P + ++ I ++ID + H + + IV+ Sbjct: 74 IGEDDV--------YLYPANELIASELSIASPELRAQRIDALNHWSG-----KGTGIVII 120 Query: 277 SVSCIYGI---GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 ++ + + S+ Q+I LK+GD +E +E L VK Y R D+ G F V G Sbjct: 121 PMAGMRKVLPPPSLWKKRQLI--LKLGDDIEIEEQLLEFVKMGYSRTDMVSSPGEFSVRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFY---PLTGQKIRNVE----TIKIYANSH-- 384 ++I+P D R+ +F +I+ I F + +K++ V T + + H Sbjct: 179 GIMDIYPLTEAD-PIRIELFDTEIDSIRSFSLEDQRSKEKLKQVHIGPATENPFEDEHYD 237 Query: 385 --YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 Y L+ ++K +K+E L L Q I Y+LE L + + Sbjct: 238 RVYEKLEKGLSASLKKLKDEKAKEL--------------LAQNIGYELEQLRNRQRPEQM 283 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Y Y N +L +Y+P+D L+F+DE Sbjct: 284 FKYLSYAYESN-----NSLLDYLPQDGLIFIDE 311 >gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT 1] gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT 1] Length = 1177 Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/318 (22%), Positives = 141/318 (44%), Gaps = 21/318 (6%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 LL+G+ + + QL+ G+ S +T MA + RP +++ P++ A ++Y + + F Sbjct: 18 LLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDMLSVFKD 77 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 V F Y + D + R +A + L ++ +VV++VS Sbjct: 78 EDVYLFPGKELLYYSNLFSESGDAAAQ------------RIAAMKRLARGDNIVVVATVS 125 Query: 280 C-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + + + L+ D + ELL LV Y+R ++ ++G V G ++I Sbjct: 126 AMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRGGIVDI 185 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P+ E +R+ FG ++ I F P + + V+ +++ V A+ Sbjct: 186 YPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERKNALSA 244 Query: 399 IKEELKMRLIELEKEGRLLEAQ-RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 + +E +L E +G EA+ +L++R+ +E + +E Y Y + Sbjct: 245 LAKE-DAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFY-----DQ 298 Query: 458 PPTLFEYIPEDSLLFVDE 475 + +Y P+++LLF+DE Sbjct: 299 AAKITDYFPDNTLLFIDE 316 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPEC 651 R A L E + E +R+ H ++ +R+E ++ G++DVL+ ++ GLDIP Sbjct: 851 RWAAKLQELMPE--VRLAVAHGQMPE-DRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNV 907 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I DADK G L Q GR R+ Sbjct: 908 NTIIIQDADKFGL----AQLYQLRGRVGRS 933 >gi|58699570|ref|ZP_00374278.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533914|gb|EAL58205.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 130 Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 17/119 (14%) Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728 TSLIQTIGRAARN +VILYAD IT S+ A+ ET RRR+KQ EHN HNI P+++ + Sbjct: 24 TSLIQTIGRAARNAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIIPKTIIKP 83 Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787 I + Q+ ++++ K + LRKQM A+NL FEEAARI+ Sbjct: 84 ISNTL-----------------QERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAARIK 125 >gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88] gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88] Length = 1030 Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 17/278 (6%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 ++G+ S K++ + V + + +P +++ + I A +Y + FF V YF Sbjct: 36 IIGLEDSSKSYLIKGVYDEIDKPLLILTHSDIEAKNIYEDL--FFYEANVHYF------- 86 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYS 291 P + +I+ + R + +LE I+V+S+ I I + Y Sbjct: 87 ------PSKEVVFYNVDAISGDLRWERLKIIKHILEPGKKIIVTSIESIAPICIPLNLYK 140 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + + IGD V+ K+L L+K Y R D+ + F + G ++IFP + +R+ Sbjct: 141 EYFFKFSIGDVVDYKDLSEKLLKSGYDRVDLVYNKAQFSIRGGILDIFPPTSSE-PYRIE 199 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 F N+I+ I F + + I V+ I+++ + + +++A + I +LK L+ Sbjct: 200 FFDNEIDSIRNFNTESQRSIEKVDCIEVFPAKEIILNKENIDSACEKIMMDLKKVRNNLD 259 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449 +L+ I ++E L+ T ++I++Y YL Sbjct: 260 SLNNKESFDKLKNTIDKNIESLKETWGFETIDSYLPYL 297 >gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1] gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1] Length = 1179 Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 72/317 (22%), Positives = 143/317 (45%), Gaps = 23/317 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G + K QL+ G++GS ++ +A V + ++PAIV+ N + A +LY + F Sbjct: 17 VISGTTAGLKEQLVSGLSGSARSAFIASVYQKTEQPAIVLTYNLLQAQKLYDDLLQFVDE 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 +A+ + P + + + ++ R +LL +C++V ++ Sbjct: 77 SALFLY-------------PANELIAAELGVASPELMAQRIEVLNALLSGKNCLIVVPMA 123 Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + I ++ + + + ++ G +E +L LV+ Y R D+ G F V G ++I Sbjct: 124 GLRKILPPKTVWEKYQLHVETGKEIELDHVLEMLVEMGYTRSDMVDSPGDFSVRGGILDI 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P ED R+ +F +++ I F + + + I + Y R +L A + Sbjct: 184 YPLTEEDPV-RIELFDTEVDSIRTFSADDQRSRDKLSAVSIGPATEYPADRLSLMKAAET 242 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 +KE L L +++ + Q L Q I++D+E L+ I Y L + P Sbjct: 243 VKEGLSKTLAKIKDDQV---KQLLAQNISFDIEKLKNGEKPDQIFKYLSILY-----DQP 294 Query: 459 PTLFEYIPEDSLLFVDE 475 +L +Y+ +LF+DE Sbjct: 295 ASLLDYVETAGILFLDE 311 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H + + +I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 856 DARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADRMGL- 914 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 915 ---SQLYQLRGRVGRS 927 >gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1165 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/314 (21%), Positives = 148/314 (47%), Gaps = 22/314 (7%) Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 + R+ L G+T S K ++ + +V+AP+++ A ++Y + +F NA Sbjct: 19 LQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA-- 76 Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 + P+ + K + ++++ R + L E + VV+S+ G Sbjct: 77 ------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVG 124 Query: 284 -IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 + ++ + + K+GD+V +E++ SLV Y+R I +G F V G I++F S Sbjct: 125 KLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRGGIIDVF-SP 183 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 E+ +R+ +F ++I+ I F +T + + N++ I I+ + ++ + + + Sbjct: 184 TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNY 243 Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462 L L +++K + A++L+Q+ +E + + ++I Y + ++ Sbjct: 244 LNSYLSKIKKPKSGI-AEKLQQKFEEIMEEITESKRVENIYELIDYFY-----DDVYSIV 297 Query: 463 EYIPEDSLLFVDES 476 +Y+ ED+++ +DES Sbjct: 298 DYMGEDAVIILDES 311 Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 918 -SQLYQLRGRVGRS 930 >gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514] gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561] gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513] gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514] gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561] gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513] Length = 1165 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/314 (21%), Positives = 148/314 (47%), Gaps = 22/314 (7%) Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 + R+ L G+T S K ++ + +V+AP+++ A ++Y + +F NA Sbjct: 19 LQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA-- 76 Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 + P+ + K + ++++ R + L E + VV+S+ G Sbjct: 77 ------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVG 124 Query: 284 -IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 + ++ + + K+GD+V +E++ SLV Y+R I +G F V G I++F S Sbjct: 125 KLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRGGIIDVF-SP 183 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 E+ +R+ +F ++I+ I F +T + + N++ I I+ + ++ + + + Sbjct: 184 TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNY 243 Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462 L L +++K + A++L+Q+ +E + + ++I Y + ++ Sbjct: 244 LNSYLSKIKKPKSGI-AEKLQQKFEEIMEEITESKRVENIYELIDYFY-----DDVYSIV 297 Query: 463 EYIPEDSLLFVDES 476 +Y+ ED+++ +DES Sbjct: 298 DYMGEDAVIILDES 311 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 918 -SQLYQLRGRVGRS 930 >gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912] gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912] Length = 1174 Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/311 (21%), Positives = 136/311 (43%), Gaps = 21/311 (6%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L++G+ R + Q + G++G+ MA + RP +V+ N A QLY + F P Sbjct: 17 LVEGLDERVEEQWVTGLSGTAAHVMMAALRRETGRPMLVVTHNLQEAQQLYDDCLEFLPS 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V F PE D E++D + TR N ++ + + Sbjct: 77 DRVLLF--------PEREAALLDVAAYSPELAAERMDVL----TRLAKGENILLITPARA 124 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + +E + ++ LK G+ +++ E + L++ Y+ D RG F V G +++F Sbjct: 125 VDQPLPDLEIFRSFLLSLKTGEVLKRDEWVDRLLQMGYEAADRVEARGQFAVRGGIVDVF 184 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P ++ A+R+ F ++I+ I F P T + + V +I N+ + P+ + A + + Sbjct: 185 PL-TQERAYRIEFFDDEIDAIRVFDPETQRSVDQVPACEIGPNTEILAPKERIQAAARVV 243 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 + + + + + EG +R+++ I D+ +E + Y L P Sbjct: 244 RSQWERQREKFADEG---HRERVDRYIGEDVRRMEAGHPFTGLLRYIHLLYPH-----PG 295 Query: 460 TLFEYIPEDSL 470 L ++P ++L Sbjct: 296 GLLTWLPAEAL 306 >gi|289644104|ref|ZP_06476199.1| Helicase subunit of the DNA excision repair complex-like protein [Frankia symbiont of Datisca glomerata] gi|289506073|gb|EFD27077.1| Helicase subunit of the DNA excision repair complex-like protein [Frankia symbiont of Datisca glomerata] Length = 87 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 39/72 (54%), Positives = 53/72 (73%) Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 NN ++ FQ+ +D+ PSGDQPAAIA+L + I + EK +LLG TG+GK+ T A +IE Sbjct: 16 NNITRSTAPFQVVSDFEPSGDQPAAIAELARRIRAGEKDLVLLGATGTGKSATTAWLIEQ 75 Query: 192 MQRPAIVMAPNK 203 +QRP +VMAPNK Sbjct: 76 VQRPTLVMAPNK 87 >gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168] gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168] Length = 1170 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 101/472 (21%), Positives = 205/472 (43%), Gaps = 37/472 (7%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +++KGI+ + + + G+ G+ F +++ + + +++ + + + Y + P Sbjct: 15 KIMKGINQGQNL-FIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLIRMMP 73 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 V + PE+ V + + + E R+R + ++ ++ ++ Sbjct: 74 EEKVLLY--------PESEVLPHEQIV---PDLAETAQRIRVLQSVITDKKPAVLLTTAT 122 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + + V ++ + I L++G ++ + L Y R ++ G F + G I+I Sbjct: 123 ALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGIIDI 182 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTAMK 397 FP + + +R+ +FG++I+ I EF P T + R++E + I A V+PR + A+ Sbjct: 183 FPLSV-NKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPR-QIKKAIP 240 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLTGRN 453 IK + + L + E L ++ LE L + GS Q + Y L Sbjct: 241 AIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPELH--- 297 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513 TL +Y+P+DS++F D++ T +I G +ATL E G LP+ N Sbjct: 298 ------TLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFLS 351 Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573 R + L+ V S+T + EL + E++ T V+P +++ + Sbjct: 352 REALLDKLKDFNFVYSSTSINEELSWVKDF--EKVSFTTRSVEP------YHGKLDLFAE 403 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 + G R+ +T+ + A + YL E + V + E + ERI ++ Sbjct: 404 RVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAFRREEF-SRERIIVM 454 >gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius LAA1] gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius LAA1] Length = 1183 Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/328 (22%), Positives = 143/328 (43%), Gaps = 29/328 (8%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQLY 210 A++ L G+ R+ L+ GVTG+G+ MA + R IV+ A ++ Sbjct: 12 GALSSLADGMGPRKNDMLITGVTGAGRQLVMAALYHLRNRRLPESMIVVTHTASHAQTIW 71 Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI-DRMRHSATRSLLER 269 + K + P V Y PE R + ++ +S ++ + DR+ +L + Sbjct: 72 EDLKEYLPDARV--------YLYPE----RDNALVDYLASSSDVLADRLH--VLEALAQE 117 Query: 270 NDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 +VV+++ + + +S + +V L +G+S ++++ LV+ Y+R ++ RG Sbjct: 118 GPVVVVTTLLAAWQPVTKKSHFLHSLVNLAVGESKPIDDVVAQLVRGGYERVNLVESRGQ 177 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 F V G +++FP D+ +R+ F DI+ I F P T + + + + P Sbjct: 178 FSVRGGILDVFPMG-HDLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDLMLP 236 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 +P + ++ L+ RL + RLEQ I+ D+ L + Y Sbjct: 237 QPVADKVADELEARLEARLKTVTDAAL---RDRLEQSISADIRKLREGQPFAGVARYQLL 293 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES 476 E TLF+++P+ + + DE+ Sbjct: 294 YP-----EHADTLFDHVPQPTFVCFDET 316 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 553 GLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 GLV +E AR QV VY+++ RMAE + + + RV Sbjct: 822 GLVKEAIERELARGGQVYFVYNDVQT-------------IHRMAERVQSLV--PDARVSV 866 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 H ++ E ++ D G++DVLV ++ GLDIP + + DADK G + L Sbjct: 867 AHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGL----SQL 922 Query: 672 IQTIGRAARNVNSKVILYA 690 Q GR R S I YA Sbjct: 923 YQLRGRVGR---SNRIAYA 938 >gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str. Eklund 17B] Length = 1167 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 104/517 (20%), Positives = 227/517 (43%), Gaps = 64/517 (12%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + ++LK I+ + + G++ SG+++ + + E +++ +++ + + A LY + Sbjct: 16 LQKILKSINEKTYPVGIYGLSDSGRSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275 N V YF P +T +I+ + R + +L +N IV+ Sbjct: 74 LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120 Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 +SV C + + + + +K G + E+ S L++ Y+R +I +G F + G Sbjct: 121 TSVDCFMATYAPHKLFVKYSMTIKQGAEINFNEMSSKLIESGYERVEIVESKGQFSIRGG 180 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++IFP+ +RV +FG+++E I F + + I V++ K++ + + ++ Sbjct: 181 ILDIFPT-CSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 A + I E K ++ +++ R+ ++LE+ + ++E LE + ++I++Y Y Sbjct: 240 AKESILNEFKEISLDNKEKERI---EKLEKVVKSNIESLEENLTFETIDSYLPYFY---- 292 Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-----CMD 509 E + F+Y ++ L +++ ++ Y + E G LP + Sbjct: 293 -EEVESFFDYF-KNYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLIKE 350 Query: 510 NRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQ 567 + L +FEE N L T+ + E+ +RP T + + + + Q Sbjct: 351 HDTLDKFEESNILFFETLNNT----------------EKFLRPFTNIELKQTTLSNYQGQ 394 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 ++ + ++I +G + ++ TK E L + L +R + Y + I + Sbjct: 395 LDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSYKDN----------IEE 444 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 ++ G+ + G L +G + PE + I +DKE F Sbjct: 445 IQFGEVIITCGNQL--KGFEYPEYKVCVI--SDKEVF 477 >gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23] gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23] Length = 1179 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/307 (23%), Positives = 141/307 (45%), Gaps = 23/307 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T ++ + + Q+P +V+ +L S+ +N P N V Y Sbjct: 27 QLITGISGSARTELLSALSKEGQQPILVVTDTISHMQELASDLENLLPANHV------YQ 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289 + E T SS N ++ R+ A +L+ R +VV+S + + I S E Sbjct: 81 FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINREPAVVVASAAGLRRNIISPEY 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++Q +++K G V+ ++ L Y+ Q + + G F + G I+I+ + D R Sbjct: 134 FAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ + F T + I NVE ++I + ++ P P + + + E K + E Sbjct: 193 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPSPEFSRVAEALDAEYKKVVKE 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIPED 468 L + ++Q++ E L Q + N L N P +LF+Y+P+D Sbjct: 253 LSADD-----ADIKQQVANRFEPLLNALKNQHLPN--ELLEFSNLVYPAKHSLFDYLPDD 305 Query: 469 SLLFVDE 475 ++ D+ Sbjct: 306 GTIYFDD 312 >gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus Ab9] gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus Ab9] Length = 1163 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/309 (22%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L G+T S K ++ + +V+AP+ I A ++Y + +F NA Sbjct: 27 LAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIEARKIYEDLYSFSFGNA---------- 76 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSV 287 + P+ + K + ++++ R + L VV+S+ G + Sbjct: 77 ----SLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAVVTSIDAAIGKLIPMNLF 132 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 E Y QM KIGD V +E++ + V Y+R I +G F V G I++F S +E+ Sbjct: 133 EKY-QMF--FKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRGGIIDVF-SPIEEYP 188 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 +R+ +F ++I+ I F +T + + N++ I I+ + ++ + + + + L L Sbjct: 189 YRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIKKGISAVSKSLNSYL 248 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 ++++K + A++L+Q+ E++E + +EN + + ++ +Y+ E Sbjct: 249 LKIKKSKSGI-AEKLQQKFE---EIMEEITEAKRVENIHELIDYFY--DEVYSIVDYVGE 302 Query: 468 DSLLFVDES 476 ++++ +DES Sbjct: 303 EAVIILDES 311 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 918 -SQLYQLRGRVGRS 930 >gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB 8052] Length = 1166 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 114/514 (22%), Positives = 219/514 (42%), Gaps = 65/514 (12%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +++GI S+ + G + SG+ + ++ + E R +V+ + + A LY + F Sbjct: 19 IIQGIESKRYPIGIYGASESGRGYIISGIFENTNRSIVVVTQSDMEAKNLYEDL--IFYT 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V YF P + +I+ + R +L I+V+S+ Sbjct: 77 SEVYYF-------------PVKEMVFYNIDAISGDLRWARLKVINEILNNKKKIIVTSIE 123 Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + + + ++ K GD V ++ L++ Y+R ++ +G F + G +++ Sbjct: 124 AFAAKYTPHNLFLEYSMKFKEGDEVNLADISKKLIQSGYERVEMVEGKGQFSLRGGILDV 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP+ +RV +FG++IE I F + + I V+ I I+ + L Sbjct: 184 FPTG-STYPYRVELFGDEIESIRTFNTESQRSIEKVKKIDIFPAKEVIVSEEMLEVGRNK 242 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 +KEE ++ E +K+ +E +L + + +LE+LE T S ++I++Y Y T + Sbjct: 243 LKEEFN-KIAESDKDSERVE--KLRKILNKNLELLEETSSFETIDSYLPYFT-----KET 294 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT-LAEYGFRLPSCMDNRPLRFEE 517 +LF+Y ++ VD ++ Y +F T ++ G P + Sbjct: 295 ESLFDYF-KNYFFIVDNVQRCNGKLESTYL-EFEENFTAFSQRGDIFPG----------Q 342 Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-------QVED 570 N L V+ S+E E+ +E + + +G + P + A+T Q++ Sbjct: 343 GNLLINKEEVLE----SFEDEKIA--FIEALTKVSGWLKPLSIVNVAQTTLNNYQGQLDL 396 Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 + DEI G + L+ T+ E L L +R I Y T+++IE Sbjct: 397 LIDEILGKKNLGYKTLILSGTRARGERLVGTLRDRGIESVYKD----TVDKIE------Y 446 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 G+ + G N LR G + P+ + I +DKE F Sbjct: 447 GEVVITFG-NQLR-GFEYPQYKVCII--SDKEVF 476 >gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1163 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/309 (22%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L G+T S K ++ + +V+AP+ I A ++Y + +F NA Sbjct: 27 LAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIEARKIYEDLYSFSFGNA---------- 76 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSV 287 + P+ + K + ++++ R + L VV+S+ G + Sbjct: 77 ----SLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAVVTSIDAAIGKLIPMNLF 132 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 E Y QM KIGD V +E++ + V Y+R I +G F V G I++F S +E+ Sbjct: 133 EKY-QMF--FKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRGGIIDVF-SPIEEYP 188 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 +R+ +F ++I+ I F +T + + N++ I I+ + ++ + + + + L L Sbjct: 189 YRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIKKGISAVSKSLNSYL 248 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 ++++K + A++L+Q+ E++E + +EN + + ++ +Y+ E Sbjct: 249 LKIKKSKSGI-AEKLQQKFE---EIMEEITEAKRVENIHELIDYFY--DEVYSIVDYVGE 302 Query: 468 DSLLFVDES 476 ++++ +DES Sbjct: 303 EAVIILDES 311 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 918 -SQLYQLRGRVGRS 930 >gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM 16841] gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM 16841] Length = 1183 Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 8/267 (2%) Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 F A E Y + + AY P D + + R +A + + E +C ++ Sbjct: 57 FHEQKAKELLEEYRFFDKNVAYYPAKDILFYQSDIRGNVLTSERINALKMMAEEKECTII 116 Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 ++ + + + E + Q + ++ +GD+VE EL LV+ Y++ G F V G Sbjct: 117 TTFDGLMNPMPAPEKFIQAVKKISVGDTVELNELTRHLVELGYEKNYQAETMGEFSVRGG 176 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 I+IFP E+ +R+ ++G++++ I F P + + I N+E I IY V Sbjct: 177 IIDIFPL-TEETPFRIELWGDEVDSIRSFDPESQRSIENLEEIYIYPACELVLTEEERRN 235 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 + I++E + + KE + EA R++ E G ++ Y Y Sbjct: 236 GVAKIQKEAEKAAEKFRKEMKTEEAYRVKSMADQIAEETMEYGITAGLDAYLSYFC---- 291 Query: 455 GEPPPTLFEYI-PEDSLLFVDESHVTI 480 E +L +Y+ EDS++F+DE+ TI Sbjct: 292 -EERVSLLDYLKKEDSIVFLDETVRTI 317 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A + E + E N V Y H ++K E I+ G+ DVLV ++ GLDI Sbjct: 851 VAAKIAELVPEAN--VAYAHGQMKETELENIMYKFINGEIDVLVSTTIIETGLDISNVNT 908 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + I DAD G + L Q GR R+ Sbjct: 909 MIIHDADNMGL----SQLYQLRGRVGRS 932 >gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1183 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/328 (22%), Positives = 141/328 (42%), Gaps = 29/328 (8%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQLY 210 A++ L G+ R L+ GVTG+G+ MA + R IV+ A ++ Sbjct: 12 GALSSLADGMGPRRNDILITGVTGAGRQLVMAALYHLRNRRLPESMIVVTHTASHAQTIW 71 Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI-DRMRHSATRSLLER 269 + K + P V Y PE R + ++ +S ++ + DR+ +L + Sbjct: 72 EDLKEYLPDARV--------YLYPE----RDNALVDYLASSSDVLADRLH--VLEALAQE 117 Query: 270 NDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 +VV+++ + + +S + +V L +G+S ++++ LV+ Y+R + RG Sbjct: 118 GPVVVVTTLLAAWQPVTKKSHFLHSLVNLAVGESKPIDDVVAQLVRGGYERVSLVESRGQ 177 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 F V G +++FP D+ +R+ F DI+ I F P T + + + + P Sbjct: 178 FSVRGGILDVFPMG-HDLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDLMLP 236 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 +P + ++ L+ RL + RLEQ I+ D+ L + Y Sbjct: 237 QPVADKVADELEARLEARLKTVTDAAL---RDRLEQSISADIRKLREGQPFAGVARYQLL 293 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES 476 E TLF+++P+ + + DE+ Sbjct: 294 YP-----EHADTLFDHVPQPAFVCFDET 316 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 553 GLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 GLV +E AR QV VY+++ RMAE + + + RV Sbjct: 822 GLVKEAIERELARGGQVYFVYNDVQT-------------IHRMAERVQSLV--PDARVSV 866 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 H ++ E ++ D G++DVLV ++ GLDIP + + DADK G + L Sbjct: 867 AHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGL----SQL 922 Query: 672 IQTIGRAARNVNSKVILYA 690 Q GR R S I YA Sbjct: 923 YQLRGRVGR---SNRIAYA 938 >gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC 35311] gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC 35311] Length = 1181 Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT MA ++ +V+ PN A QL + KN P +V F Sbjct: 26 QLITGLAGSAKTLVMANGYIQQKKKMMVIVPNLYYANQLVEDLKNLIPTESVHLF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 D I E + + R AT + L ++ IVV + Sbjct: 81 ---------PVDEVISAEMAFSSPEARAERVATLNFLITKKTGIIVVPVAGLRKYLPKKT 131 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ + +IG+ ++ + L LV Y+RQ + G F G ++I+P + E Sbjct: 132 TWKNAQIHWRIGEELDLEALAQQLVLLGYERQSLVGKPGEFSFRGSIVDIYPLNTE-YPI 190 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ +F +++ + F T + + ++ + I + + + L T +K +K L+ RL Sbjct: 191 RMELFDVEVDSLRYFEVDTQRSVETIDEVTISPMTDLIFSKADLETGIKELKNILEKRL- 249 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 + KE L + + L++ L E ++ Y+ +L + TL +Y P + Sbjct: 250 AITKE--LADKEILQEYFGQLLSSWEQGIPTENAHYYTDFLY-----KEKTTLLDYFPNN 302 Query: 469 SLLFVDE 475 SLLFVD+ Sbjct: 303 SLLFVDD 309 >gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus C3-41] gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus C3-41] Length = 1169 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 26/322 (8%) Query: 157 IAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 I L+ I S + QL+ G+TGS + + + E +++P +++PN + A ++ E Sbjct: 14 ITSFLQDIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPNLLQAQRMVDELAG 73 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274 V Y+ + D +I + S+ R AT L R + + Sbjct: 74 LLGEENVHYYPA--------------DEFIAADLSVASPELRAERIATLDCLARGEKAVY 119 Query: 275 VSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V V+ + I E + +Q +GD +E L +LV+ Y R + G F + G Sbjct: 120 VIPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 ++I+P +L R+ +F +++ I F + I ++ I+I S + + Sbjct: 180 GILDIYPPYLAS-PIRIELFDTEVDSIRTFSADDQRSINKLQKIRILPASEVILTKSERQ 238 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 T + +++ L L+K R + L Q I YD+E+L+ + Y L ++ Sbjct: 239 TLAERLEKALGA---SLKKVKRQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKS 295 Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475 L +Y +D ++ DE Sbjct: 296 -----AYLGDYFAQDGIVLFDE 312 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ + H ++ E +I G +DVLV ++ G+DIP + + DAD+ G Sbjct: 857 RIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDADRMGL--- 913 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 914 -AQLYQLRGRVGRS 926 >gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1] gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1] Length = 765 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/306 (20%), Positives = 144/306 (47%), Gaps = 22/306 (7%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L G+T S K ++ + +V+AP+++ A ++Y + +F NA Sbjct: 27 LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA---------- 76 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 + P+ + K + ++++ R + L E + VV+S+ G + ++ + Sbjct: 77 ----SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVGKLIPMDLF 132 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + K+G +V +E++ SLV Y+R + +G F V G I++F S E+ +R+ Sbjct: 133 KKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEGKGQFSVRGGIIDVF-SPTEEYPYRI 191 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F ++I+ I F +T + + N++ I I+ + ++ + + + L L ++ Sbjct: 192 ELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAGAEHIKKGISAVSNYLNSYLSKI 251 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +K + A++L+Q+ +E + + ++I Y + ++ +Y+ ED++ Sbjct: 252 KKSKSGI-AEKLQQKFEEIMEEITESKRVENIYELIDYFY-----DDVYSIVDYMGEDAV 305 Query: 471 LFVDES 476 + +DES Sbjct: 306 IILDES 311 >gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus JW 200] gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus JW 200] Length = 1169 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/306 (20%), Positives = 145/306 (47%), Gaps = 22/306 (7%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L G+T S K ++ + +V+AP+++ A ++Y + +F NA Sbjct: 27 LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA---------- 76 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 + P+ + K + ++++ R + L E + VV+S+ G + ++ + Sbjct: 77 ----SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAVVTSIDAAVGKLIPMDLF 132 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + K+GD+V +E++ +LV Y+R + +G F V G I++F S E+ +R+ Sbjct: 133 KKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRGGIIDVF-SPTEEYPYRI 191 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F ++I+ I F +T + + N++ I I+ + ++ + + + L L ++ Sbjct: 192 ELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNYLNSYLSKI 251 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +K + A++L+Q+ +E + + ++I Y + ++ +Y+ E+++ Sbjct: 252 KKSKSGI-AEKLQQKFEEIMEEITESKRVENIHELIDYFY-----DDVYSIVDYMGEEAV 305 Query: 471 LFVDES 476 + +DES Sbjct: 306 IILDES 311 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 918 -SQLYQLRGRVGRS 930 >gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC 49540] gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC 49540] Length = 1170 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 151/320 (47%), Gaps = 28/320 (8%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 Q+L I ++ QL+ G++GS +T + + +++ +P +V+ + +L ++ +N P Sbjct: 15 QVLTAIQKHQR-QLITGISGSARTLLLTALQKSLNQPQLVITDSLFHMQELAADLENLLP 73 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 + Y + E T SS N ++ R++ A +L+ IV++S Sbjct: 74 EEEI------YQFPVEEVLAAEVAT-----SSPNYRLQRVQ--ALNALINNKPAIVIAST 120 Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + I + E + Q + LK+G ++ ++ L Y+RQ + + G F V G I+ Sbjct: 121 AGLRRNIVAPELFKQAELSLKVGGEIDPEKAADQLSSMGYQRQKMVLRPGDFAVRGSIID 180 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 I+ + +D RV +F +I+ + F T + I+NVE ++I + ++ P + Sbjct: 181 IYSLNTDDPV-RVDLFDTEIDSLRYFDASTQRSIKNVEEVEILPATDFILPVNEFKRVEE 239 Query: 398 YIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 + E+ + +++ E L + A R E +T DL+ + T + +LT N Sbjct: 240 KLAEQYEQLKRQVDGEDELEQLANRFEPLLT-DLKQHQLT---------NEFLTYTNLIY 289 Query: 457 PPP-TLFEYIPEDSLLFVDE 475 P +L +Y+ D ++ +D+ Sbjct: 290 PQEHSLLDYLSADGVVHIDD 309 >gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 1169 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/306 (20%), Positives = 145/306 (47%), Gaps = 22/306 (7%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L G+T S K ++ + +V+AP+++ A ++Y + +F NA Sbjct: 27 LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA---------- 76 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 + P+ + K + ++++ R + L E + VV+S+ G + ++ + Sbjct: 77 ----SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAVVTSIDAAVGKLIPMDLF 132 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + K+GD+V +E++ +LV Y+R + +G F V G I++F S E+ +R+ Sbjct: 133 KKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRGGIIDVF-SPTEEYPYRI 191 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F ++I+ I F +T + + N++ I I+ + ++ + + + L L ++ Sbjct: 192 ELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNYLNSYLSKI 251 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +K + A++L+Q+ +E + + ++I Y + ++ +Y+ E+++ Sbjct: 252 KKSKSGI-AEKLQQKFEEIMEEITESKRVENIHELIDYFY-----DDVYSIVDYMGEEAV 305 Query: 471 LFVDES 476 + +DES Sbjct: 306 IILDES 311 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 918 -SQLYQLRGRVGRS 930 >gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905] gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905] Length = 1169 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/322 (22%), Positives = 136/322 (42%), Gaps = 26/322 (8%) Query: 157 IAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 I L+ I S + QL+ G+TGS + + + E +++P +++PN + A ++ E Sbjct: 14 ITSFLQEIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPNLLQAQRMVDELAG 73 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274 V Y+ + D +I + S+ R AT L R + + Sbjct: 74 LLGEENVHYYPA--------------DEFIAADLSVASPELRAERIATLDCLARGEKAVY 119 Query: 275 VSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V V+ + I E + +Q +GD +E L +LV+ Y R + G F + G Sbjct: 120 VIPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 ++I+P +LE R+ +F +++ I F + I ++ I+I S + + Sbjct: 180 GILDIYPPYLES-PIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPASEVILTKSERQ 238 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 +++ L L +++K+ + L Q I YD+E+L+ + Y L + Sbjct: 239 NLADRLEKALAASLKKVKKQET---KELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKT 295 Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475 L +Y +D ++ DE Sbjct: 296 -----AFLGDYFAQDGIVLFDE 312 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ + H ++ E +I G +DVLV ++ G+DIP + + DAD+ G Sbjct: 857 RIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDADRMGL--- 913 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 914 -AQLYQLRGRVGRS 926 >gi|289610846|emb|CBI60165.1| unnamed protein product [Sordaria macrospora] Length = 140 Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743 +VILYAD +T S++ AI ET RRREKQ +N++H I P ++K +I ++I + D T Sbjct: 34 GRVILYADRMTGSMERAIAETDRRREKQRAYNEEHGITPTTIKRQIGDIIADVASRDQVT 93 Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784 + ID + + +++++SL KQM AA NL FE A Sbjct: 94 --VEIDEDRPHMVGHNLRSYIESLEKQMREAAANLEFETAG 132 >gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str. Okra] gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str. Okra] Length = 1168 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ V + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNVFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F V G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I V I I+ + ++ +K IK +L +++L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLDSTY 322 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|145629309|ref|ZP_01785108.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] gi|144978812|gb|EDJ88535.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21] Length = 98 Score = 74.7 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F + +D+ PSGDQP AI +L + + Q LLGVTGSGKTFT+A VI + RPA+++A Sbjct: 10 FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69 Query: 201 PNK 203 PNK Sbjct: 70 PNK 72 >gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans DSM 771] gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans DSM 771] Length = 1197 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 144/332 (43%), Gaps = 51/332 (15%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L G+ + Q++ G++ + K+F +A +++AM++ A+++ + AA L + KN P Sbjct: 25 LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEAAGLTEDLKNLLPD 84 Query: 220 NAVEYFVSYYDY-YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 V F + YQ AY +++I R R SL + ++++ V Sbjct: 85 LKVMTFPARRLLPYQVFAY--------------SKEILRQRMEVLESLCRGENPVIIAPV 130 Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + +G + ++L +G E +++S L + Y+R ++ G F V G ++ Sbjct: 131 EALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVESHGQFSVRGGILD 190 Query: 338 IFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 I+P + + V RV F ++++ I F P T + N+ ++I+ V + A Sbjct: 191 IYPITGINPV--RVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREMVVRQGDWERAY 248 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ-------------SIE 443 + + +E + R L+K+ D E+L+ C+ SIE Sbjct: 249 QALSQEYQYRRRNLDKKS--------------DSEVLDNLSRCEEVLDNISQAKYFDSIE 294 Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Y Y + TL YI +SL+ VDE Sbjct: 295 QYLPYFYDED-----ITLLNYIKAESLVLVDE 321 >gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str. Loch Maree] gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str. Loch Maree] Length = 1168 Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ + + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F V G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I V I I+ + ++ +K IK +L +++L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFIPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLDSTY 322 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC 2916] gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str. Kyoto] gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC 2916] gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str. Kyoto] Length = 1168 Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ + + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F V G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I V I I+ + ++ +K IK +L +++L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLDSTY 322 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402 065] Length = 1168 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ + + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F V G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I V I I+ + ++ +K IK +L +++L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLDSTY 322 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1150 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 21/316 (6%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ GI S K QL+ G+TGS + +A +++ +QRP +V+ N A ++ + P Sbjct: 17 IVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNMFSAQKITEDLVECLPE 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 N V + P + + + ++ ++ID + TR +V Sbjct: 77 NQVLLY--------PAQELLAAEVAVASPETLAQRIDVL----TRLAAGFRGVLVTPYAG 124 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + E ++ +++K+GD ++ L+ L + Y+R D +G V G I+++ Sbjct: 125 LRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLTELGYERVDRVESKGEISVRGGIIDVY 184 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P E A R+ +F ++++ I F + + I I I V + Sbjct: 185 PLTAE-AALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRVSQQA 243 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 E L+ +LEK +L + I Y++E L Q+ +Y++ P Sbjct: 244 YELLQA---QLEKMSDRTAKDKLLENIGYEIEQLREE---QTFNGMFKYISLFYP--ESH 295 Query: 460 TLFEYIPEDSLLFVDE 475 TLF+Y+P+D +L +DE Sbjct: 296 TLFDYMPQDGILLLDE 311 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 846 DARVSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 904 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 905 ---SQLYQLRGRVGR---SNRIAYA 923 >gi|409879|gb|AAD12393.1| Homology to uvrB excision repair gene X03678 [Mycoplasma genitalium] Length = 130 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 61/124 (49%) Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298 P YIEK +++NE I R+R S SL R D IVV SV+ IY S + + + Sbjct: 5 PDKGIYIEKSATVNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFV 64 Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358 +G + K + LV Y + G FR GD +E+FP + + R+S F +E Sbjct: 65 VGKDYDLKTIKDRLVSLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVE 124 Query: 359 EISE 362 +I + Sbjct: 125 QICQ 128 >gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68] gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3] gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3] Length = 1164 Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 139/307 (45%), Gaps = 28/307 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLG+TG+ K+ MA ++M +++ + A +L ++ V Y+ Sbjct: 26 QLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQNDAEKLVADLVAIIGSENV------YN 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ ++ P + + +ID + + + +V S +C + S E+Y Sbjct: 80 FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASMAACRVLLPSPETY 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++L++G +E +L+++LV YK+ + +G F GD ++IF E +R+ Sbjct: 135 KGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQAE-TPYRI 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++I+ I F + + + N++ I I S + + A +YI+ Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +E LE++ +Y E+L + + ++L+ E TL +Y+P+ S Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297 Query: 471 LFVDESH 477 LF+D+ H Sbjct: 298 LFLDDFH 304 >gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str. Alaska E43] Length = 1167 Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 108/518 (20%), Positives = 224/518 (43%), Gaps = 66/518 (12%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + ++LK I+ + + G++ SGK++ + + E +++ +++ + + A LY + Sbjct: 16 LQKVLKSINEKTYPVGIYGLSDSGKSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275 N V YF P +T +I+ + R + +L +N IV+ Sbjct: 74 LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120 Query: 276 SSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 +S+ S + + +++ + +K G V E+ L++ Y+R +I +G F V G Sbjct: 121 TSIDSFMATYAPHKLFAKYSMTIKQGTEVNFNEISLKLIESGYERVEIVESKGQFSVRGG 180 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++IFP+ +RV +FG+++E I F + + I V++ K++ + + ++ Sbjct: 181 ILDIFPT-CSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239 Query: 395 AMKYIKEELK-MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A + I E K + L EKE ++LE+ + ++E LE + ++I++Y Y Sbjct: 240 AKELILNEFKEISLNNKEKE----RIEKLEKVVKSNIESLEENLTFETIDSYLPYFY--- 292 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-----CM 508 + + F+Y +D L +++ ++ Y + E G LP Sbjct: 293 --DEIESFFDYF-KDYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLIN 349 Query: 509 DNRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSART 566 ++ L +FEE N L T+ + E+ +RP T + + + + Sbjct: 350 EHDTLDKFEESNILFFETLNNT----------------EKFLRPFTSIELKQTTLSNYQG 393 Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 Q++ + ++I +G + ++ TK E L + L +R + Y I Sbjct: 394 QLDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSYRDK----------IE 443 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 ++ G+ + G L +G + PE + I +DKE F Sbjct: 444 QIQFGEVVITCGNQL--KGFEYPEYKVCVI--SDKEVF 477 >gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1] gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1] Length = 1177 Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/323 (21%), Positives = 135/323 (41%), Gaps = 21/323 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q + L G+ QL+ G++GS ++ +A + + AIV+ N + A ++Y + Sbjct: 10 QNEELQALASGVEEGLGEQLVAGLSGSSRSVFIASMFRKTGKSAIVLTHNLLQAQKIYED 69 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F V Y P + + + +++I+ + AT ++ Sbjct: 70 LLQFLNDEEV--------YLYPANELIAAELSVASPELKSQRIEVLNRLAT----DQKGI 117 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 VV + + + M + +G+ V+ LL L+ Y+R ++ G F + Sbjct: 118 FVVPAAGLRKILPPKSLWKSMQLSFTLGEDVDLDNLLEQLLVMGYQRNEMVGTPGEFSLR 177 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 G ++IFP LE R+ +F +++ I F + I ++ + I S + L Sbjct: 178 GGILDIFPHTLE-TPVRIELFDTEVDSIRSFSLEDQRSIEKLKDVHIGPASETIMKGEHL 236 Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 + ++ L L +++ + ++L Q I Y+LE L Q + Y + Sbjct: 237 ANIIDRLEAGLAKSLKKIKSDSV---KEKLTQNIGYELEQLRNGQKSQQVYKYLSFAY-- 291 Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED + F+DE Sbjct: 292 ---DEPASLLDYLPEDGIFFLDE 311 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV + H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVAFAHGKMNETELESVILSFLDGEFDVLVTTTIIETGVDIPNVNTLIVYDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591] gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591] Length = 1164 Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 139/307 (45%), Gaps = 28/307 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLG+TG+ K+ MA ++M +++ + A +L ++ V Y+ Sbjct: 26 QLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQNDAEKLVADLVAIIGSENV------YN 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ ++ P + + +ID + + + +V S +C + S E+Y Sbjct: 80 FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASMAACRVLLPSPETY 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++L++G +E +L+++LV YK+ + +G F GD ++IF E +R+ Sbjct: 135 KGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQAE-TPYRI 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++I+ I F + + + N++ I I S + + A +YI+ Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +E LE++ +Y E+L + + ++L+ E TL +Y+P+ S Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297 Query: 471 LFVDESH 477 LF+D+ H Sbjct: 298 LFLDDFH 304 >gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str. Langeland] gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str. Langeland] gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str. 230613] Length = 1168 Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 70/317 (22%), Positives = 140/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ + + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F V G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I V I I+ + ++ +K IK +L ++ L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLRL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLDSTY 322 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|99034182|ref|ZP_01314264.1| hypothetical protein Wendoof_01000940 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 60 Score = 74.3 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 FQ+ T + P+GDQP AI L+ G++S ++ Q+LLGVTGSGKTFTMA VI RPA++ Sbjct: 3 FQITTHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALI 60 >gi|307706692|ref|ZP_07643498.1| uvrABC system protein B [Streptococcus mitis SK321] gi|307617936|gb|EFN97097.1| uvrABC system protein B [Streptococcus mitis SK321] Length = 107 Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 74/111 (66%), Gaps = 9/111 (8%) Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPILLEDAATT 744 +YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I + E+ Sbjct: 1 MYADTVTQSMQHAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEKKEV 60 Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 +I+ +L+K++ K +K L KQM A + L+FE AA+IRD + +K+ Sbjct: 61 DIN------NLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 105 >gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1173 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 21/316 (6%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ GI S K QL+ G+TGS + +A +++ +QRP +V+ N A ++ + P Sbjct: 17 IVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNMFSAQKITEDLVECLPE 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 N V + P + + + ++ ++ID + TR +V Sbjct: 77 NQVLLY--------PAQELLAAEVAVASPETLAQRIDVL----TRLAAGFRGVLVTPYAG 124 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + E ++ +++K+GD ++ L+ L + Y+R D +G V G I+++ Sbjct: 125 LRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLTELGYERVDRVESKGEISVRGGIIDVY 184 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P E A R+ +F ++++ I F + + I I I V + Sbjct: 185 PLTAE-AALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRVSQQA 243 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 E L+ +LEK +L + I Y++E L Q+ +Y++ P Sbjct: 244 YELLQA---QLEKMSDRTAKDKLLENIGYEIEQLREE---QTFNGMFKYISLFYP--ESH 295 Query: 460 TLFEYIPEDSLLFVDE 475 TLF+Y+P+D +L +DE Sbjct: 296 TLFDYMPQDGILLLDE 311 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 846 DARVSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 904 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 905 ---SQLYQLRGRVGR---SNRIAYA 923 >gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM 5501] gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM 5501] Length = 1175 Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 95/411 (23%), Positives = 180/411 (43%), Gaps = 39/411 (9%) Query: 259 RHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R +A L R++ I+++ + + + + + ++ ++ +VE K++ S L+ Q Y Sbjct: 104 RLTALEKLTTRDESIIIAPIQALLMKLPPADIFADYSFRIDFDSTVELKKISSQLINQGY 163 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R D+ +G F + G I+I+P + R+ +FG+++E I EF T + I+ + + Sbjct: 164 CRVDMVENKGDFSIRGGIIDIYPLTRSN-PVRIELFGDEVESIREFDLATQRSIKELNDV 222 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I + + +L + + +ELK L ++G+ EA+ LE+++ DLE +E Sbjct: 223 HIPPATEILLDSDSLQQGIAKLNKELKQNREVLIEDGKNKEAKELERKLETDLEQIEEGI 282 Query: 438 SCQSIENY-SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR--K 494 +I Y + +G + TL +Y E SL+F + + + M D H + Sbjct: 283 QFPAIRQYLPAFYSGLS------TLIDYFNEGSLVFDSPNRIQKRAVDLM---DDHNGLR 333 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT-- 552 +L G L S N F + L T S L + Q I ++ R Sbjct: 334 LSLLNQGSVLSSYAKN----FASFEELLTETYDYS----KLYLNKTQEIKSLRVDRKLEF 385 Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 L + PV R Q+ DE+ +Q R+++T+ T+ + L L E ++ Y Sbjct: 386 NLKETPV----FRGQINHFLDELKQLIEQQYRVIITLSTESKCKRLINSLQEEDLTAFYT 441 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 EI L+ G ++ V + L++G +P+ + + D G Sbjct: 442 E---------EITDKLQSG--NIAVTTDALQKGFSLPDLKFILFTETDIFG 481 >gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112] gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112] Length = 1178 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 23/307 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T ++ + + QRP +V+ +L S+ +N P N V Y Sbjct: 26 QLITGISGSARTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289 + E T SS N ++ R+ A +L+ +VV+S + + I S E Sbjct: 80 FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINNEPAVVVASAAGLRRNIISPEY 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++Q +++K G V+ ++ L Y+ Q + + G F + G I+I+ + D R Sbjct: 133 FAQSSLKIKTGGEVDPVKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ + F T + I NVE ++I + ++ P + + + E K + E Sbjct: 192 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFSRVYEALDTEYKKVVKE 251 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIPED 468 L + ++Q++ E L Q + N L N P +LF+Y+P+D Sbjct: 252 LSADD-----ADIKQQVANRFEPLLNALKNQHLPN--ELLEFSNLVYPTKHSLFDYLPDD 304 Query: 469 SLLFVDE 475 ++ D+ Sbjct: 305 GTIYFDD 311 >gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 1175 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/273 (21%), Positives = 127/273 (46%), Gaps = 7/273 (2%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295 Y P D + +I + R A ++++ N+ I+V+++ + + + + + + Sbjct: 84 YYPSRDILFYNADVHSNEIVKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQI 143 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +KIGD+V+ + + L++ Y+R + G F + G ++IF S + R+ ++ Sbjct: 144 VIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIF-SPANNTPIRMELWDT 202 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ I F P+T + I N+E IY N + PR L A+ I++ELK + L + G Sbjct: 203 EIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRESGA 262 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 A R+++ D+E + + ++ Y+ + +LF+Y+ +F+ + Sbjct: 263 KSAANRIKENTNEDIESIVNGLNIETQVLYAPFCDMET-----ASLFDYLEYKKTIFITD 317 Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 ++ ++ + EYG LPS + Sbjct: 318 IKKCKDKLLRVFLEYEESVKSRLEYGHMLPSMV 350 >gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM 20016] gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3] gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A] gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM 20016] gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3] gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A] Length = 1179 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 23/307 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T ++ + + QRP +V+ +L S+ +N P N V Y Sbjct: 27 QLITGISGSARTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRV------YQ 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289 + E T SS N ++ R+ A +L+ +VV+S + + I S E Sbjct: 81 FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINNEPAVVVASAAGLRRNIISPEY 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++Q +++K G V+ ++ L Y+ Q + + G F + G I+I+ + D R Sbjct: 134 FAQSSLKIKTGGEVDPVKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ + F T + I NVE ++I + ++ P + + + E K + E Sbjct: 193 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFSRVYEALDTEYKKVVKE 252 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIPED 468 L + ++Q++ E L Q + N L N P +LF+Y+P+D Sbjct: 253 LSADD-----ADIKQQVANRFEPLLNALKNQHLPN--ELLEFSNLVYPTKHSLFDYLPDD 305 Query: 469 SLLFVDE 475 ++ D+ Sbjct: 306 GTIYFDD 312 >gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14] Length = 1164 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 138/307 (44%), Gaps = 28/307 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLG++G+ K+ MA + + +++ + A +L ++ V Y+ Sbjct: 26 QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAIIGRENV------YN 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ ++ P + + +ID + + + +V S V+C + S E+Y Sbjct: 80 FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASIVACRVLLPSPETY 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 +QL++G +E +L+ +LV YK+ + +G F GD ++IF E +R+ Sbjct: 135 KGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQSE-TPYRI 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++I+ I F + + + N++ I I S + + A +YI+ Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +E LE++ +Y E+L + + ++L+ E TL +Y+P+ S Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297 Query: 471 LFVDESH 477 LF+D+ H Sbjct: 298 LFLDDFH 304 >gi|404614|gb|AAD10554.1| UvrB protein [Mycoplasma genitalium] Length = 83 Score = 73.2 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%) Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 + N +K + FQ+ T+Y P+GDQP AI +L + + K Q+LLG T +GKTFT+A VI+ Sbjct: 6 MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSE---FKTKQQVLLGATATGKTFTIANVIQ 62 Query: 191 AMQRPAIVMAPNKILAAQLYS 211 Q P +V+A NK LA QL++ Sbjct: 63 NSQLPTVVIAHNKTLAGQLFN 83 >gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1167 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 106/515 (20%), Positives = 222/515 (43%), Gaps = 60/515 (11%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + ++LK I+ + + G++ SGK++ + + E +++ +++ + + A LY + Sbjct: 16 LQKVLKSINEKTYPVGIYGLSDSGKSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275 N V YF P +T +I+ + R + +L +N IV+ Sbjct: 74 LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120 Query: 276 SSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 +S+ S + + +++ + +K G V E+ L++ Y+R +I +G F V G Sbjct: 121 TSIDSFMATYAPHKLFAKYSMTIKQGTEVNFNEISLKLIESGYERVEIVESKGQFSVRGG 180 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++IFP+ +RV +FG+++E I F + + I V++ K++ + + ++ Sbjct: 181 ILDIFPT-CSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239 Query: 395 AMKYIKEELK-MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A + I E K + L EKE ++LE+ + ++E LE + ++I++Y Y Sbjct: 240 AKELILNEFKEISLNNKEKE----RIEKLEKVVKSNIESLEENLTFETIDSYLPYFY--- 292 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513 + + F+Y +D L +++ ++ Y + E G LP + L Sbjct: 293 --DEIESFFDYF-KDYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPG---QKKL 346 Query: 514 RFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVE 569 E + L + I+ T + E+ +RP T + + + + Q++ Sbjct: 347 LINEHDTLDKFEESKILFFETLNN----------TEKFLRPFTSIELKQTTLSNYQGQLD 396 Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 + ++I +G + ++ TK E L + L +R + Y I ++ Sbjct: 397 ILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSYRDK----------IEQIQ 446 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 G+ + G L +G + PE + I +DKE F Sbjct: 447 FGEVVITCGNQL--KGFEYPEYKVCVI--SDKEVF 477 >gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33] gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84] gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7] gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407] gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus suis 05ZYH33] gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis SC84] gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis BM407] gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis P1/7] gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1] Length = 1164 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 138/307 (44%), Gaps = 28/307 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLG++G+ K+ MA + + +++ + A +L ++ V Y+ Sbjct: 26 QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAIIGSENV------YN 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ ++ P + + +ID + + + +V S V+C + S E+Y Sbjct: 80 FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASIVACRVLLPSPETY 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 +QL++G +E +L+ +LV YK+ + +G F GD ++IF E +R+ Sbjct: 135 KGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQSE-TPYRI 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++I+ I F + + + N++ I I S + + A +YI+ Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +E LE++ +Y E+L + + ++L+ E TL +Y+P+ S Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297 Query: 471 LFVDESH 477 LF+D+ H Sbjct: 298 LFLDDFH 304 >gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13] gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13] Length = 1178 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/317 (20%), Positives = 145/317 (45%), Gaps = 23/317 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +L G+ + QL+ G++ S ++ +A + E + P +++ N A ++Y + +F P Sbjct: 17 VLVGLQEGLQEQLISGISNSARSMLIAALYEERKAPILLITHNLFHAQKVYDDLASFLPE 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + + Y P V + I ++++ + H AT+ N+ I+++ ++ Sbjct: 77 DQL--------YLYPVNDVLAAEIGIASPELKAQRVEALNHWATK-----NNGIIIAPIA 123 Query: 280 CIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + I S E + Q ++ +++ ++E L LV+ Y+R + G F + G I+I Sbjct: 124 GLKRILPSKEKWQQTLLTIEVEKTLELDNLAERLVRFGYQRVGMVATPGDFSIRGGIIDI 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P E+ A R+ +F +++E I F + +++ + I + + L + Sbjct: 184 YPI-TEEYAIRIELFDDEVESIRYFTVEDQRSQKHMVMVTIGPATEMLLTDQELANGREV 242 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 +++EL + +++ + Q L + I+Y+LE + + Y + P Sbjct: 243 LEKELAKTIKKMKNDKV---KQLLTENISYELEQIRNGQVFSELYKYLSFFYS-----SP 294 Query: 459 PTLFEYIPEDSLLFVDE 475 +L +YIP ++ +DE Sbjct: 295 ASLLDYIPRGGIVIMDE 311 Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G+ +VLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYAHGKMTENELESVMIQFLEGEAEVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM 16646] gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM 16646] Length = 1177 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 108/499 (21%), Positives = 201/499 (40%), Gaps = 58/499 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ S + F +A V + +P +V+ + + A +L + F VE F Sbjct: 31 GLSDSQRAFLIAAVRKRFPKPVLVVTADSLDARKLADDLAYFLGTEDVEMF--------- 81 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQM 293 P + + ++ + ++ R SL+ +VVS + + + + + Sbjct: 82 ----PASSVIPYETAARSPELTAQRLKVMESLVTGKQPVVVSPLQALTNRMMPPDVVKKF 137 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 ++L++GDS+ +E + L Y+R D RG F V G ++++P E+ +R+ F Sbjct: 138 TIKLRVGDSIPLEEAVLKLSFMGYERVDTVEGRGQFAVRGGILDVYPLTAEN-PYRMEFF 196 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 G++++ I EF + + +E + I+ V R T A I EL+ R E Sbjct: 197 GDEVDSIREFSVEDQRSMDKLEEVFIFPAREVVFDRETAKNAAISIARELEDRKKAFELT 256 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-- 471 G A +LE++I LE +E + Q E+ Y++ T + +P +L Sbjct: 257 GSAQIAAQLEEKI---LEHIEKLENGQFFESAQHYISHFYSNLSALTDYFTLPPLVILVE 313 Query: 472 ---FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT-TIV 527 V+ + + +I Y+G L E G LPS + F+ LR + T+ Sbjct: 314 PGKIVESTKNSAFEIEETYKG-------LLEKGEVLPSVSEMYFTPFDILENLRKSKTVY 366 Query: 528 VSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584 +S PG +E+ + G VD E E+ ++G R Sbjct: 367 ISMLPRIPGEFEIGGLYSFQFRSVTSFHGKVDLLAE-------------EVAHFKKKGYR 413 Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ T + L+ L E+ + + + + +L G+ V++ L + Sbjct: 414 VVILSGTGERGKHLSRTLREKALDAAFYGT---------LGDELLPGQ--VVITPGSLEK 462 Query: 645 GLDIPECGLVAILDADKEG 663 G IPE I D D G Sbjct: 463 GFQIPEIKFALISDLDVYG 481 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H ++ E E++ D ++DVLV ++ GLDIP + ++ AD+ G Sbjct: 865 RIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVISADRFGL--- 921 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 922 -SQLYQLRGRVGRS 934 >gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 3502] gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 19397] gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str. Hall] gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 3502] gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str. ATCC 19397] gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str. Hall] Length = 1168 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/317 (21%), Positives = 140/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ + + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSARGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I V I I+ + ++ +K IK +L +++L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLDSTY 322 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon 786 str. D14] gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon 786 str. D14] Length = 1177 Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 147/319 (46%), Gaps = 21/319 (6%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 A + GI+S K QL+ G++GS + +A + + +RP +V+ N A ++Y + + Sbjct: 18 FASTVAGINSGMKEQLISGLSGSSRQVMLAALHQETKRPLLVVTHNMFSAQKMYEDLQEA 77 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + V + P + ++ + ++ ++I+ + +R +VV Sbjct: 78 LSPDQVLMY--------PANELVAAESAVSSPETLAQRIEVLLQ-CSRGF---RGIVVVP 125 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 I + E+ ++ + +++G ++E + ++ +V+ Y+R + RG + G I Sbjct: 126 YSGIRRYIPTPEAMAEAGLTVRLGGTLELERFMAQMVELGYERVERVESRGEMSLRGGII 185 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 + +P +A+RV +F ++++ I F P + + ++ + I + + + A Sbjct: 186 DFYPL-TASMAYRVELFDDEVDSIRTFDPADQRSVDQIKEVFIPPCKELIATKERMGQAA 244 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 + + E+L+ I+L+K RL + + ++EML I Y + Sbjct: 245 QALSEKLE---IQLDKMTDRQAKNRLREEMYKEIEMLREHVYFSEIYKYISLIYPER--- 298 Query: 457 PPPTLFEYIPEDSLLFVDE 475 TL++Y+PED+LL +DE Sbjct: 299 --KTLYDYMPEDTLLLLDE 315 Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 852 RVVVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 908 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 909 -SQLYQLRGRVGR---SNRIAYA 927 >gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf] gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str. 657] gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf] gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str. 657] Length = 1168 Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/317 (21%), Positives = 140/317 (44%), Gaps = 32/317 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G++ SGK + ++ + + ++ + + A ++Y + + YY P Sbjct: 34 GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290 V + Y +I+ + R +L I+V+ CI + S E Y Sbjct: 84 TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ +L +GD +E K L L+K Y+R DI +G F V G I+I+P + +R+ Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++I+ I F + + I I I+ + ++ +K IK +L +++L Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKANNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K+ + ++++ I +LE L + S ++I+ + Y + +L +YI E SL Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305 Query: 471 LFVDESHVTIPQISGMY 487 + +D+ + ++ Y Sbjct: 306 IIIDDVKRCLGKLESTY 322 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ H ++K E ++ D KFD+L+ ++ G+DI + I DADK G Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 -SQLYQLRGRVGR 929 >gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 1177 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 43/327 (13%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G+H K QLL G++GS ++ + + +P ++ N A ++ + + Sbjct: 17 IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D I+R+ + I Sbjct: 77 RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117 Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 VV+ V+ + + VE + SQM++Q +G +E +L S LV+ Y+R D+ G F Sbjct: 118 VVAPVAALRRMLPPVEVWKNSQMLIQ--VGHDIEPDQLASRLVEVGYERSDMVSAPGEFS 175 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G ++I+P E R+ +F +++ I F + I + +I I + Sbjct: 176 IRGGIVDIYPLTSEH-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPE 234 Query: 391 TLNTAMKYIKEELKMRL--IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 AM+ I + L L ++++K+ +L A I+YD E L + Q + Y Y Sbjct: 235 EKVRAMEKIDKGLAASLKKLKVDKQKEILHAN-----ISYDKERLSEGQTDQELVKYLSY 289 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y PE++LL +DE Sbjct: 290 FY-----EKPASLLDYTPENTLLILDE 311 Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|266621876|ref|ZP_06114811.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479] gi|288866408|gb|EFC98706.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479] Length = 69 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 47/67 (70%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 F++ ++Y P+GDQP AI L+KG + + LLGVTG GKTFTMA I+ +Q+ +++A Sbjct: 3 FKLHSEYQPTGDQPQAIEALVKGFKEGSQFETLLGVTGFGKTFTMANAIQQLQKSTLIIA 62 Query: 201 PNKILAA 207 NK LA+ Sbjct: 63 RNKTLAS 69 >gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112] gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112] Length = 1179 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 75/309 (24%), Positives = 142/309 (45%), Gaps = 27/309 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T ++ + + QRP +V+ +L S+ +N P N V Y Sbjct: 27 QLITGISGSVRTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRV------YQ 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289 + E T SS N ++ R+ A +L+ +V++S + + I S E Sbjct: 81 FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINNEPAVVIASAAGLRRNIISPEY 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++Q +++K G V+ ++ L Y+ Q + + G F + G I+I+ + D R Sbjct: 134 FAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ + F T + I NVE ++I + ++ P +T + E L + Sbjct: 193 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIP----STEFSRVYEALDTEYKK 248 Query: 410 LEKEGRLLEAQ--RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIP 466 +EKE L A ++Q++ E L Q + N L N P +LF+Y+P Sbjct: 249 VEKE---LSADDTDIKQQVANLFEPLLNALKNQHLPN--ELLEFSNLVYPAKHSLFDYLP 303 Query: 467 EDSLLFVDE 475 +D ++ D+ Sbjct: 304 DDGTIYFDD 312 >gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. JH642] gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. SMY] gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis] gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] Length = 1177 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 80/327 (24%), Positives = 140/327 (42%), Gaps = 43/327 (13%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G+H K QLL G++GS ++ + + +P ++ N A ++ + + Sbjct: 17 IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D I+R+ + I Sbjct: 77 RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117 Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 VV+ V+ I + VE + SQM++Q +G +E +L S LV+ Y+R D+ G F Sbjct: 118 VVAPVAAIRRMLPPVEVWKSSQMLIQ--VGHDIEPDQLASRLVEVGYERSDMVSAPGEFS 175 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G I+I+P E+ R+ +F +++ I F + I + +I I + Sbjct: 176 IRGGIIDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPE 234 Query: 391 TLNTAMKYIKEELKMRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 AM+ I L L +L +K+ +L A I++D E L + Q + Y Y Sbjct: 235 EKARAMEKIDSGLAASLKKLKADKQKEILHAN-----ISHDKERLSEGQTDQELVKYLSY 289 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y P+++LL +DE Sbjct: 290 FY-----EKPASLLDYTPDNTLLILDE 311 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|146319859|ref|YP_001199570.1| transcription-repair coupling factor [Streptococcus suis 98HAH33] gi|145690665|gb|ABP91170.1| Transcription-repair coupling factor (superfamily II helicase) [Streptococcus suis 98HAH33] Length = 320 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 71/319 (22%), Positives = 143/319 (44%), Gaps = 29/319 (9%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I Q G++ + QLLLG++G+ K+ MA + + +++ + A +L ++ Sbjct: 13 INQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAI 71 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V Y+++ ++ P + + +ID + + + +V S Sbjct: 72 IGSENV------YNFFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVAS 120 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 V+C + S E+Y +QL++G +E +L+ +LV YK+ + +G F GD + Sbjct: 121 IVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL 180 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 +IF E +R+ FG++I+ I F + + + N++ I I S + + A Sbjct: 181 DIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 +YI+ +E LE++ +Y E+L + + ++L+ E Sbjct: 240 QYIQTA--------------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSC--IYE 283 Query: 457 PPPTLFEYIPEDSLLFVDE 475 TL +Y+P+ S LF+D+ Sbjct: 284 QSWTLLDYLPKSSPLFLDD 302 >gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto BEST195] Length = 1177 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 80/327 (24%), Positives = 140/327 (42%), Gaps = 43/327 (13%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G+H K QLL G++GS ++ + + +P ++ N A ++ + + Sbjct: 17 IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D I+R+ + I Sbjct: 77 RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117 Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 VV+ V+ I + VE + SQM++Q +G +E +L S LV+ Y+R D+ G F Sbjct: 118 VVAPVAAIRRMLPPVEVWKSSQMLIQ--VGHDIEPDQLASRLVEVGYERSDMVSAPGEFS 175 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G I+I+P E+ R+ +F +++ I F + I + +I I + Sbjct: 176 IRGGIIDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPE 234 Query: 391 TLNTAMKYIKEELKMRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 AM+ I L L +L +K+ +L A I++D E L + Q + Y Y Sbjct: 235 EKARAMEKIDSGLAASLKKLKADKQKEILHAN-----ISHDKERLSEGQTDQELVKYLSY 289 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y P+++LL +DE Sbjct: 290 FY-----EKPASLLDYTPDNTLLILDE 311 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans P7] Length = 1173 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 101/516 (19%), Positives = 224/516 (43%), Gaps = 71/516 (13%) Query: 164 IHSREKVQLLLGVTG---SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 I S EK + +G+ G S + + + V E + +P +V+ + + A +LY + + + Sbjct: 20 ISSIEKSKFPVGIFGLSESARGYLIDGVYEELDKPFLVLTHSDVEAKRLYEDLSLYLTNV 79 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 YY P V + Y +I+ + R R +L+ I+V+ C Sbjct: 80 ----------YYFPTKEVVFYNIY-----AISGDLRWERLKVIREMLKSGKKIIVT---C 121 Query: 281 IYGIGS----VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 I + S V Y + I D ++ + L L++ Y++ +I +G F + G I Sbjct: 122 IETLASSYIPVNLYRNYTFNISIKDILDIENLKQKLIQCGYEKVEIIDGKGQFSIRGGII 181 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 +I+ S + +R+ +FGN+++ I F + + I V++I+I+ + ++ + Sbjct: 182 DIY-SPIAAEPYRIELFGNEVDSIRSFNLQSQRSIDKVKSIEIFPAKEMILDNESIEKGL 240 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 + ++ +LK+ +L+K + ++Q + +LE L + ++I+++ Y + Sbjct: 241 QGMESDLKLVCDKLKKRKDNDALENVQQEVKKNLESLRENWTFETIDSFLPYFYDKT--- 297 Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516 + EY E + +D+ ++ +Y + F +N E Sbjct: 298 --SSFLEY-TEGYFIILDDLQRCKGKLDSVY------------FEFE-----ENYKSFLE 337 Query: 517 EWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575 N L + + ++++ + LE+ + + ++ I + T ++ P I ++ + + + ++ Sbjct: 338 RGNILSKQSELLLNKSHVLESLEEKEVMTMDAIPKSTKILAPRSIINFSQITLHNYHGQM 397 Query: 576 NLAAQ-------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 +L Q +G++I++ T+ E L L + +I Y ++I D+ Sbjct: 398 DLLIQDIKDKKSKGVKIVILSGTRPRGERLVNTLRDNDIESSYK----------DVIHDI 447 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 + G+ + G L G + PE + I +DKE F Sbjct: 448 QPGEVVITFGSQL--NGFEYPELKVCVI--SDKEVF 479 Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ E II D ++D+LV ++ G+DI + I D+DK G Sbjct: 864 RVAVAHGQMQERELENIIVDFMKNEYDILVATTIIETGMDIQNVNTMIIYDSDKMGL--- 920 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 921 -SQLYQLRGRVGR 932 >gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5] gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5] Length = 1177 Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 43/327 (13%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G+H K QLL G++GS ++ + + +P ++ N A ++ + + Sbjct: 17 IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D I+R+ + I Sbjct: 77 RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117 Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 VV+ V+ I + VE + SQM++Q +G +E +L S L++ Y+R D+ G F Sbjct: 118 VVAPVAAIRRMLPPVEVWKSSQMLIQ--VGHDIEPDQLASRLIEVGYERSDMVSAPGEFS 175 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G I+I+P E+ R+ +F +++ I F + I + +I I + Sbjct: 176 IRGGIIDIYPLTSEN-PVRIELFDTEVDSIRNFNSDDQRSIETLTSINIGPAKELIIRPE 234 Query: 391 TLNTAMKYIKEELKMRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 AM+ I L L +L +K+ +L A I++D E L + Q + Y Y Sbjct: 235 EKARAMEKIDSGLAASLKKLKADKQKEILHAN-----ISHDKERLSEGQTDQELVKYLSY 289 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y P+++LL +DE Sbjct: 290 FY-----EKPASLLDYTPDNTLLILDE 311 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3] gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3] Length = 1177 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 74/317 (23%), Positives = 139/317 (43%), Gaps = 23/317 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +++G+H R K QL+ G++GS ++ ++ + + RP +V++ N A ++Y + + Sbjct: 17 IIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDLVSLLGP 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 V + S + E V + ++ ++ M H A + +VV V+ Sbjct: 77 EDV-FLYSMNEVIAAEMAVASPELKAQR-------LEIMNHWA-----QGGKGVVVCPVA 123 Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + S + Q + +G + + V+ YKR G F V G I+I Sbjct: 124 GLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGIIDI 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P +E + +R+ +F +IE I F P + +E I I + T ++ Sbjct: 184 YPLTVE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGIER 242 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I+ L L ++ E QR+ + I +LE L Q IE +Y++ E Sbjct: 243 IEAGLASSLETMKDEA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EKV 294 Query: 459 PTLFEYIPEDSLLFVDE 475 +L +Y+PED +L +DE Sbjct: 295 ASLLDYLPEDGVLLMDE 311 Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y+H + E I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus flavithermus WK1] gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus flavithermus WK1] Length = 1189 Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 64/323 (19%), Positives = 147/323 (45%), Gaps = 25/323 (7%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A + + +G+ + K QL+ G++GS ++ ++ + E +RP ++ N A ++Y + Sbjct: 31 ADMQSVAEGVRNGLKEQLVTGLSGSARSVFISSLYEDTERPLCIVTHNLFQAQKIYDDLI 90 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCI 273 + E ++ + I E ++ + ++ R ER I Sbjct: 91 QLID--------------EEEVFLYPVNELIAAELAVASPELRAQRLEVLNYWCERKKGI 136 Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 V++ ++ + + + + + + ++G+ ++ + L V Y+R + G F V Sbjct: 137 VIAPIAALRRLLPPKDVWQRYQLHFRVGEQMDVEHCLKQFVAMGYERVSVVSTPGEFSVR 196 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 G I+I+P E + +R+ +F +IE I F + + ++ + I + + + + Sbjct: 197 GGIIDIYPLTAE-LPYRIELFDVEIESIRTFSVDDQRSVAEIDEVLIGPATELIVEQQHI 255 Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 N A++ ++ +L L + E RL + ++++LE L+ + +SIE +Y + Sbjct: 256 NEAIQRLEAQLHDTLQHIHDEKT---KNRLYEHVSFELEQLK---NGKSIEEMYKYFSLF 309 Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475 P +L +YIPE ++ +DE Sbjct: 310 YPS--AASLLDYIPEHGVVIIDE 330 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H + E ++ G++DVLV ++ G+DIP + + DADK G Sbjct: 877 DARVTYAHGRMSEHELEAVMLAFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADKMGL- 935 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 936 ---SQLYQLRGRVGRS 948 >gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1] Length = 1188 Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 72/338 (21%), Positives = 137/338 (40%), Gaps = 27/338 (7%) Query: 175 GVTGSG--KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 G TG G + F M + +++ N A +LYS+ K +Y Sbjct: 33 GTTGEGTDRVFMMQGFGDDAS-VRLILTYNDRRAEELYSDMK----------------FY 75 Query: 233 QPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 + Y+ P D I R R R L C ++++V +Y I ++ Sbjct: 76 GRDVYMYPAKDILFFSADVHGNAITRRRMEVLRRLATGEPCTIIATVDAMYDKIPALSYM 135 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + ++ + S++ EL LV Y++ D G F + G ++IFP E+ +R+ Sbjct: 136 KKYVINIHAAQSLDLDELKGKLVDLGYEKTDSVEEPGQFAIRGGIVDIFPL-TEECPYRI 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 M+ ++++ I F + + I NV+ + IY V + ++ + ++ ELK +L Sbjct: 195 DMWDDEVDTIKTFDAESQRSIENVDELVIYPAGEMVLSKERIDRGIHRLEAELKPYAKKL 254 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 + + R++ I E L + +++Y Y +L + +PED+ Sbjct: 255 KDSFQTEAYARIKGEIATLKEQLTEFSAIYGVDSYVDYFYS-----DTVSLVDCLPEDAY 309 Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 +F+DE+ + G + E G+ LP M Sbjct: 310 IFIDETKKVTEKADGSEKSFLSSLTHRLEGGYILPGQM 347 >gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032] gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032] Length = 1177 Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 33/322 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 + G+ K QLL G++GS ++ A + + ++RP ++ N A ++ + + Sbjct: 17 IFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNLYQAQKVTDDLASVMSD 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D ++R+ + N I Sbjct: 77 RSVLLYPVNELIASEIAVASPELRAQRLDV-----------LNRLANG-------ENPII 118 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V + + + VE + + + LK+G+ ++ + LV+ Y R + G F V G Sbjct: 119 VTPAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+ S ED R+ +F +++ I F+ T + + ++ IKI + P Sbjct: 179 GIIDIY-SLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERV 237 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A++ + + L L + + + + L Q IT D E L Q + Y Y Sbjct: 238 RAIEQLDQGLANSLKKFNSDQ---QKELLHQHITADREKLLEGIVTQEMTKYLSYFY--- 291 Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y +D+++ +DE Sbjct: 292 --EKPASLLDYTSQDTIIILDE 311 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1196 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 21/312 (6%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 R Q++ G++GS +A + A RP ++ + A LYS+ V Sbjct: 27 RSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKEQV---- 82 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIG 285 Y PE V + + NE R +++L + + + S+ S + Sbjct: 83 ----YIYPEHQVYPFELAWQSRDVNNE-----RAQVLQAMLSKKSAVYIFSLKSAKEKLS 133 Query: 286 SVESYSQMIVQLKIGDSVEQKELLS-SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 + Q + L++G+ +++ L Y+ + +G F G I++FP E Sbjct: 134 PAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVASE 193 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT-LNTAMKYIKEEL 403 + R+ F ++IE I F T + ++ ++ + S V T L+ A+ + E Sbjct: 194 -LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTREF 252 Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463 +++ +L K+G ++ LE+RI DL LE S Y Y +N G T+ + Sbjct: 253 ELQKGKLMKDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYG----TIID 308 Query: 464 YIPEDSLLFVDE 475 ++P +SL +VDE Sbjct: 309 FLPTNSLFWVDE 320 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 ++A+++ +++ + + V + K LER+ + D GK+DVLV +++ GLDI Sbjct: 860 KVAKEVADWVPDAKVGVAHGQMPEKQLERVML--DFYEGKYDVLVSTSIVEAGLDIQNVN 917 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680 + I +AD+ G L L +GR+ R Sbjct: 918 TIIIYNADRMG-LSQPYQLRGRVGRSNR 944 >gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans DSM 574] gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans DSM 574] Length = 1169 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 107/513 (20%), Positives = 210/513 (40%), Gaps = 55/513 (10%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 LL+G+ + Q++ G+ GS +++ A + +R +V+AP + AA L + + P Sbjct: 16 HLLQGLEKGFRQQMVFGLAGSQRSYLFAGLAHT-RRSVLVVAPGETEAAALADDLTSLLP 74 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +V+ F + P + ++ + + + EQ+ SA L+ +V S Sbjct: 75 DLSVQLFPVWQ--MLPYQVLAHSNEVLAQRLRVLEQL-----SAGEPLV-----VVTSPE 122 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + + + +S+ + L +G V+ +++ L+K Y+R D+ G F G I+I Sbjct: 123 ALLRRLTPPDIFSRAKLSLSLGQRVDLEKMRQDLIKMGYERVDLVEGPGQFSSRGGIIDI 182 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP R+ F ++++ I F + + ++ I I V + Sbjct: 183 FPMTAARPV-RIEFFDDEVDSIRHFDVDNQRSLDKLKGISISPCRELVLTPAAWQRGKEN 241 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 + E K +L +L++ G + +L + L+ + + +E + P Sbjct: 242 YEAEYKNQLKKLQRSGSVDAVHQLSSQGAMLLDQIHGQIPFEGMEQLHSFFY-----PEP 296 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 TL +Y E LL VD+ + + R L G LP ++ + +W Sbjct: 297 VTLLDYFAEKPLLLVDDPIRFKEVVDTILRERNETYTDLLAKGKVLPGQFNS----YLDW 352 Query: 519 -NCLRPTTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVE-IRSARTQVED 570 L P LE+CQGI Q I+ +V+ P + + S E Sbjct: 353 PKLLAP-------------LERCQGIYCSFLPRNPQYIKAQNVVNFPAKAMHSFLGHYEV 399 Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 + DEI ++G ++L V ++ A +L + L ++ +V H +K L D + Sbjct: 400 LADEIRHWRRRGYAVVLLVSSEERATNLLQLL--KDAKVDAFH--IKQL-------DNEV 448 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 + +V++ + L G ++ L I D + G Sbjct: 449 KEGNVVITVGQLANGFELISARLAVITDQEIFG 481 >gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353] gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353] Length = 1187 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/305 (21%), Positives = 126/305 (41%), Gaps = 22/305 (7%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A +LY + +FF N V Y P D + I+R R + Sbjct: 76 AKELYQDL-SFFDPNTVLY--------------PSRDVLFYSADVHSNHIERQRMDILKK 120 Query: 266 LLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 ++E +V+ + + E + + + + ++ L L + Y+ + Sbjct: 121 IVEGKPLTIVACLDVFMEKMIPFEEFKEHCLTIDFESIIDTDALKLKLSELGYENSGLVE 180 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 G F + G I+IFP E++ R+ ++G++++ I F T + + ++ +++Y + Sbjct: 181 APGQFGIRGGIIDIFP-LTEELPVRIELWGDEVDSIRSFDTETQRSVEKLDEVQVYPATE 239 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 + R + A++ +KEE K + +K R E +RL + E L + G+ + E Sbjct: 240 MILSRNKIGEAVRRMKEEYKKQEEAFKKRKRFAEKERLRKMTVRTEEELLSFGTAEGSEA 299 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504 Y E + EY+PE++L F+DE H + + F + E G+ L Sbjct: 300 LLSYFY-----EKTVSFLEYLPENTLFFIDEPHRVLEKGKTYEEEFFLCMQSRLEGGYVL 354 Query: 505 PSCMD 509 P D Sbjct: 355 PGQAD 359 >gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans 743B] Length = 1173 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/317 (19%), Positives = 146/317 (46%), Gaps = 25/317 (7%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + G+ S + F + + E + + +V+ + + A LY + + F P V YF Sbjct: 32 IYGLADSSRAFALFSIFEKLDQTMLVLTSSDVEARNLYEDLQFFTPK--VYYF------- 82 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYS 291 P + +++ + R + + N I+VSS+ + +E Sbjct: 83 ------PTKEVVFYNIEAVSGDLRWERLKVLKEIKSNNKKIIVSSIENLAPNYCPIEYIE 136 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 Q +LK+ D++ + LV+ Y+R +I RG F + G I++FP V +R+ Sbjct: 137 QSFFKLKLNDTLITADFSMKLVQSGYERVEIIDARGQFSIRGGIIDVFPPT-SSVPFRIE 195 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL-KMRLIEL 410 +FG++I+ I F + + I V I+++ + + ++ I+++L K+ + Sbjct: 196 LFGDEIDSIRTFNLESQRSIERVTEIELFPAKEMILTNELVEKGVERIEKDLEKVLQVAK 255 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +++ + LE +++ I ++E L+ + ++I+++ Y E P + +Y +D + Sbjct: 256 KRDDKELE-EKIRFSINRNIESLKERWTFETIDSFLTYFY-----EKPSSFLDYF-KDCM 308 Query: 471 LFVDESHVTIPQISGMY 487 + ++++ T ++ +Y Sbjct: 309 ICIEDTDRTSGKLDSVY 325 Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H ++ E E++R ++D+LV ++ G+DI + I DADK G Sbjct: 865 RIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDADKMGL--- 921 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 922 -SQLYQLRGRVGR 933 >gi|147676451|ref|YP_001210666.1| helicase subunit of the DNA excision repair complex [Pelotomaculum thermopropionicum SI] gi|146272548|dbj|BAF58297.1| helicase subunit of the DNA excision repair complex [Pelotomaculum thermopropionicum SI] Length = 541 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 104/535 (19%), Positives = 210/535 (39%), Gaps = 55/535 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFP 218 L++G+ + + Q + G++GS ++ A + A P +V+ P + A Q+ E P Sbjct: 17 LIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTPGEREACQMADEIAGLLP 76 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 AV+ F P + + +++++ R SL+ +V++ Sbjct: 77 GAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQVLESLVRGERAVVIAPA 123 Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + + + + ++L G+ + +L+ L+ Y+R + RG F + G ++ Sbjct: 124 EAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERVGLVEGRGQFCLRGGILD 183 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 +FP R+ F ++++ I F T + ++ ++I A + + Sbjct: 184 VFPMTAHRPV-RIEFFDDEVDSIRRFNAATQRSEEKIDEVEIGAARELIVEDKAWENFRR 242 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 +K+E + + ++LEK G A++L ++ E G IEN+ Y Sbjct: 243 ALKKEYRAQALKLEKAGETGAARQLAEKFAETAE--GACGYFNGIENFLPYFY-----RE 295 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517 T+ +Y+P + + VD+ I + R + L G LPS L + Sbjct: 296 VITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSRGRVLPSQF----LAYAG 351 Query: 518 WNCL-----RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV 571 W+ + R I S P +RP P + + S ++ + Sbjct: 352 WSDIQGGLSRHPVIYSSLLPRQ-----------PDFVRPQQTFSLPWKAMPSFLGNLKML 400 Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 +EI + G ++ V + A+ + L + + Y S +R G Sbjct: 401 AEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASSPEG---------HVRSG 451 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 +VLV + L G ++P+C L + + D G R + +GR A V+ +V Sbjct: 452 --NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRVGRMAPFVDLRV 504 >gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus HTA426] gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus HTA426] Length = 1177 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/319 (22%), Positives = 138/319 (43%), Gaps = 27/319 (8%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-P 218 +++G+H R K QL+ G++GS ++ ++ + + RP +V++ N A ++Y + + P Sbjct: 17 IIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDLVSLLGP 76 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVVSS 277 + Y V + I E ++ + ++ R ++ +VV Sbjct: 77 EDVFLYSV---------------NEVIAAEMAVASPELKAQRLEIMNHWVQGGKGVVVCP 121 Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 V+ + + S + Q + +G + + V+ YKR G F V G I Sbjct: 122 VAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGII 181 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 +I+P E + +R+ +F +IE I F P + +E I I + T + Sbjct: 182 DIYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGI 240 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 + I+ L L ++ E QR+ + I +LE L Q IE +Y++ E Sbjct: 241 ERIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--E 292 Query: 457 PPPTLFEYIPEDSLLFVDE 475 +L +Y+PED +L +DE Sbjct: 293 KVASLLDYLPEDGVLLMDE 311 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y+H + E I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61] gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52] gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61] gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52] Length = 1177 Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 25/318 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-P 218 +++G+H R K QL+ G++GS ++ ++ + + RP +V++ N A ++Y + + P Sbjct: 17 IIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDLVSLLGP 76 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 + Y V+ V + + ++++ M H A + +VV V Sbjct: 77 EDVFLYSVN---------EVIAAEMAVASPELKAQRLEIMNHWA-----QGGKGVVVCPV 122 Query: 279 SCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + + S + Q + +G + + V+ YKR G F V G I+ Sbjct: 123 AGLRRLLPPPSLWKQYLFTFFVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGIID 182 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 I+P E + +R+ +F +IE I F P + +E I I + T ++ Sbjct: 183 IYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGIE 241 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 I+ L L ++ E QR+ + I +LE L Q IE +Y++ E Sbjct: 242 RIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EK 293 Query: 458 PPTLFEYIPEDSLLFVDE 475 +L +Y+PED +L +DE Sbjct: 294 VASLLDYLPEDGVLLMDE 311 Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y+H + E I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4] Length = 1181 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 27/325 (8%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 D + ++ + +G+H QL+ G++GSG++ +A V + R +V+ N A +L Sbjct: 10 DVQSIVSGIQEGLHE----QLIAGLSGSGRSLFIASVFKDTNRQTVVVTHNLFQAQKLQE 65 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + +V Y P + + I ++ID + H A+ + Sbjct: 66 DLIALLGEESV--------YLYPANELIAAELSISSPELKAQRIDTLYHMASG-----HK 112 Query: 272 CIVVSSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 I + ++ I + + +M + L +G+ + LL+SLV+ Y R D+ G F Sbjct: 113 GIYIVPMAGIRKLLPPKKEWEMFQITLTVGEDINVSSLLTSLVQTGYTRADMVSAPGEFS 172 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 V G I+I+P D R+ +F +++ I F + I ++T+ I + V Sbjct: 173 VRGGIIDIYPLTSTDPV-RIELFDTEVDSIRTFSAEDQRSIDKLQTVLIPPATELVLTSQ 231 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 + + EL + L +L+ ++L Q I YDLE L + YS Sbjct: 232 DIARLGDKLATELALSLKKLKSTK---AKEKLSQNIGYDLERLRNGQLPDDLFKYSSLAY 288 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y+ + ++ DE Sbjct: 289 -----EEPSSLLDYVASNGIVIFDE 308 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H + E +I G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 RVVYAHGRMTENELESVILSFLEGEADVLVTTTIIETGVDIPNANTLIVHDADRMGL--- 914 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 915 -SQLYQLRGRVGRS 927 >gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061] gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061] Length = 1177 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 33/322 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 + G+ K QLL G++GS ++ A + + ++RP ++ N A ++ + + Sbjct: 17 IFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNLYQAQKVTDDLASVMSD 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D ++R+ + N I Sbjct: 77 RSVLLYPVNELIASEIAVASPELRAQRLDV-----------LNRLANG-------ENPII 118 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V + + + VE + + + LK+G+ ++ + LV+ Y R + G F V G Sbjct: 119 VTPAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+ S ED R+ +F +++ I F+ T + + ++ IKI + P Sbjct: 179 GIIDIY-SLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERV 237 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 A++ + + L L + + + + L Q I+ D E L Q + Y Y Sbjct: 238 RAIEQLDQGLAKSLKKFNSDQ---QKELLHQHISADREKLLEGIVTQEMTKYLSYFY--- 291 Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y +D+++ +DE Sbjct: 292 --EKPASLLDYTSQDTIIILDE 311 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16] gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16] Length = 1177 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 21/316 (6%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +++GIH+R K QL+ G++GS ++ ++ + + RP +V+A N A ++Y + + Sbjct: 17 IIEGIHARLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNLFQAQKIYDDLVSLLGS 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V + S + E V + ++ ++ M H A E +V Sbjct: 77 DDV-FLYSVNEVIAAEMAVASPELKAQR-------LEIMNHWAQ----EGKGVVVCPVAG 124 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + + + + +G ++ + V+ YKR G F + G ++I+ Sbjct: 125 LRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIRGGIVDIY 184 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P E + +R+ +F +IE I F P + V+ + I + ++ I Sbjct: 185 PLTAE-LPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEARQRGIERI 243 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 + L L ++ + QR+ + I +LE L Q IE +Y++ E Sbjct: 244 EAGLAASLENIKDDA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EKAA 295 Query: 460 TLFEYIPEDSLLFVDE 475 +L +Y+PED +L +DE Sbjct: 296 SLLDYLPEDGVLLMDE 311 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV + H + E I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC 39073] gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC 39073] Length = 1183 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 106/503 (21%), Positives = 204/503 (40%), Gaps = 59/503 (11%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+ K +A +++ P +V+ P A +L ++ ++F+P + DY Sbjct: 32 LYGLPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAADIESFWPGEGI-------DYL 83 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 P +P + Y +++ + T + R +VV + + ++ Sbjct: 84 PPSELLP-LEVYTPSPELAAQRLKVL----TNLVSGRTRILVVPVEDLLRKLPPPDTLRH 138 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + L++G ++++ LL L Y+R+++ G V G I+IFP E+ R+ + Sbjct: 139 SLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIIDIFPLGAEEPV-RLEL 197 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++I+ + F P++ + + ++ I + + V P P L ++ +K E L + Sbjct: 198 FGDEIDSLRRFDPVSQRSVADLRAI-VVGPAQEVLPPPDLGPGLETLKAEFSQTYATL-R 255 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + + A+ L+ R+ + MLE + R TLFEY LL Sbjct: 256 QRQPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQ-----ATLFEYFQRQPLLV 310 Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEY---GFRLPS----CMDNRPLR--FEEWNCLRP 523 +D+ + + M R + R + G LPS +D+ L ++ + L Sbjct: 311 LDDPARLLEE---MRRREQQRLGIFTDMLAAGLALPSQGQAYLDSADLERLWQRYQRLY- 366 Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583 +++ PGS GI + I + + ++ V +E+ ++G Sbjct: 367 FSLLPRRVPGS-NPRPAVGISAQT-------------IPAFQGKLGLVVEELTRWRREGY 412 Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RI+L V L + L E+ I H E + LG+ +V++ LR Sbjct: 413 RIILMVADPNRVVALRQALAEQGIEA-LTHPEARDT----------LGRGEVIMVSGRLR 461 Query: 644 EGLDIPECGLVAILDADKEGFLR 666 +G PE L I D + G +R Sbjct: 462 QGFTWPEMRLAIIGDTEIYGPIR 484 >gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2] gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2] Length = 1175 Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 49/369 (13%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN- 215 + ++ G+ + Q++ G+ GS + +A V + + RP +V+ N A ++ + + Sbjct: 14 VQSIIAGVRKGMREQMISGLAGSSRQVLVAAVKDDLDRPLLVVTHNMYAAQKIAEDLQEC 73 Query: 216 -------FFPHN---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 +P N A E +S PE R D I+ Sbjct: 74 ISADDVLLYPANELVAAEAAIS-----SPETLAQRMDVLIK------------------- 109 Query: 266 LLERNDCIVVSSVSCI---YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 L E IVV S I I V S +++++ K+GD++E L + Y R D Sbjct: 110 LSEGFRGIVVVPFSGIRRYQPIKGVMSDAKILI--KVGDTIELDGFLRQMTGLGYIRADR 167 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 +G V G ++ +P E +A+R+ FG++++ I F P + + N++T + Sbjct: 168 VESKGEMSVRGGIVDFYPLTAE-LAYRIEWFGDEVDSIRTFDPSDQRSLDNLQTFTVTPC 226 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 V + + A ++ L +L+K + RL Q I ++E L I Sbjct: 227 QEIVADQRRFSAAAEHAATLLAQ---QLDKMTDRMAKDRLRQEIGGEIEKLREHVYFPEI 283 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502 Y L T+ +Y+P+D++L +DE I + R + L G Sbjct: 284 YKYISLLYPER-----QTILDYMPDDTVLILDEPTRLIETGRQLERDEAEWSTHLLSNGK 338 Query: 503 RLPSCMDNR 511 LPS M R Sbjct: 339 SLPSFMLAR 347 Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 +MAE + + + + V + + LE+ I D G+ DVLV +++ G+DIP Sbjct: 835 QMAEQINALVPDAKVAVGHGQMSEQELEKT--ILDFLDGESDVLVSTSIIETGVDIPNVN 892 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 + + DADK G + L Q GR R S I YA Sbjct: 893 TLIVHDADKMGL----SQLYQLRGRVGR---SNRIAYA 923 >gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82] gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82] Length = 1176 Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 111/509 (21%), Positives = 199/509 (39%), Gaps = 56/509 (11%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L G+H + + G + K M V IV + A ++Y E++ F P Sbjct: 17 LSAGVHDLRGIAQISGCIDAAKPHIMYSVNNGSGNRIIVTFQEQ-RAKEIYEEYRFFDP- 74 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV- 278 AY P D + + R +A + L E + C ++++ Sbjct: 75 --------------KAAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTIITTFD 120 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 S + + E + Q + ++ +GD + +EL LV+ Y++ G F V G ++I Sbjct: 121 SLMNPMPMPEKFIQEVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRGGILDI 180 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP ED +R+ +G++++ I F + + I N+E I IY V +K Sbjct: 181 FPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQEGIKR 239 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I +E +L KE + EA R + E G ++ Y Y E Sbjct: 240 ILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC-----EER 294 Query: 459 PTLFEYIP-EDSLLFVDESHVTIPQISGMY-RGDFHRKATL-AEYGFRLPSCMDNRPLRF 515 +L +Y E++++FVDE +I + GM +F E G+ LP M R L F Sbjct: 295 VSLLDYFNRENTVIFVDELARSIER--GMVTETEFSESMKQRLEKGYILPGQM--REL-F 349 Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575 L + + + +L+ I E+ + V+P E + ++ Sbjct: 350 SCKEILAKIETMACISLVALDLKNSHVDIKEKFTINSKTVNP------YNNSFELLVKDL 403 Query: 576 NLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 + G R++L KR+AEDL M E+ + +++ G Sbjct: 404 TRYKKNGYRVILLSGSRTRAKRLAEDL-------------MAEELNAFYSEDFDHEVKPG 450 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660 +++ G +++G + P V I ++D Sbjct: 451 --EIMTGYGKIKKGYEYPLLKFVVISESD 477 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A + E + E N V Y H ++K E I+ G+ DVLV ++ GLDI Sbjct: 851 VAAKIAELVPEAN--VAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNT 908 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 + I DAD G L L +GR+ R + ++ D + K I Sbjct: 909 MIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEI 951 >gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON] gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON] Length = 1159 Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 35/305 (11%) Query: 173 LLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 + GV G+ + M ++ A + AIV+ N++ A QLY + + F V F Sbjct: 31 IYGVPDEGRAYLMYVLVNIASSKSAIVITHNEVRAKQLYDDMSSIFKDIPVYLF------ 84 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 P +T + S + ++ R L + + IV++S+ + + E + Sbjct: 85 -------PAAETILYDVSGKSNEVLFQRLEIENRLAFKENMIVIASIDALLPRLMPFEEF 137 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ ++ IG +E+ + L++ Y+R+++ +G F + GD I+ +P E+ A+R+ Sbjct: 138 NKYFHEISIGQIIERDVMERWLLEAGYQREELVEAKGQFAIRGDIIDFYPIVGEE-AYRI 196 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 F ++++ I F T + V+ I V + A K ++ E Sbjct: 197 EFFDDEVDSIRRFDADTQRSTDKVDKAVISPVKELVYDSGVADRAAKAMRSE-------- 248 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 E +I D+E+L +++E Y + + G L +Y+P +L Sbjct: 249 ------FERINGNDQIGGDIELLSQNARFENVERYMPFFYNKVAG-----LLDYMPTGTL 297 Query: 471 LFVDE 475 F++E Sbjct: 298 FFMEE 302 Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MA L E + E I V + LER+ + D G +DVL+ ++ GLDIP Sbjct: 837 MAIHLHELVPEARIAVAHGRMGDDKLERV--MMDFMDGYYDVLLCTTIIETGLDIPNVNT 894 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + + DAD G L Q GR R S + YA K ++ +E +R Sbjct: 895 LIVYDADHFGL----AQLYQLRGRVGR---SNRLAYAYFTYKKDRVLTEEAEKR 941 >gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa E681] gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa E681] Length = 1175 Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 78/326 (23%), Positives = 147/326 (45%), Gaps = 31/326 (9%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A A + GI S K QL+ G++GS + MA + E RP +VM N A ++ + + Sbjct: 13 ADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHNMFAAQKIADDLQ 72 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 + V + P + + I +++++ID + A + IV Sbjct: 73 EALSPDQVLLY--------PANELVAAEAAISSPETLSQRIDVLIRCA-----QGFRGIV 119 Query: 275 VSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V S + + + E++ + ++LK G++++ + L +V+ Y+R + RG V G Sbjct: 120 VVPFSGVRRLLPIPETWREARIELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+ +P +RV +F ++I+ I +F P Q R+VE ++ VTP + Sbjct: 180 GIIDFYPMTTR-WGYRVELFDDEIDSIRKFDP---QDQRSVEKVQDVT----VTPCKEVI 231 Query: 394 TAMKYIKEELKMRLIELEKE-GRLLE---AQRLEQRITYDLEMLETTGSCQSIENYSRYL 449 + + + I LE++ G++ + Q L++ I ++E+L I Y L Sbjct: 232 ANNQRMDQAADAAAILLEEQLGKMTDRQAKQHLKEEIHREIELLREHVYFDEIYKYISLL 291 Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDE 475 TL +Y+P D++L +DE Sbjct: 292 YPER-----KTLADYMPADTILIIDE 312 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 849 KVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924 >gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1] Length = 1176 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 109/509 (21%), Positives = 199/509 (39%), Gaps = 56/509 (11%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L G+H + + G + K M V IV + A ++Y E++ F P Sbjct: 17 LSAGVHDLRGIAQISGCIDAAKPHIMYSVNNGSGNRIIVTFQEQ-RAKEIYEEYRFFDP- 74 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 AY P D + + R +A + L E + C ++++ Sbjct: 75 --------------KAAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTIITTFD 120 Query: 280 CIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + E + Q + ++ +GD + +EL LV+ Y++ G F V G ++I Sbjct: 121 GLMNPMPMPEKFIQEVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRGGILDI 180 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP ED +R+ +G++++ I F + + I N+E I IY V +K Sbjct: 181 FPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQEGIKR 239 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I +E +L KE + EA R + E G ++ Y Y E Sbjct: 240 ILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC-----EER 294 Query: 459 PTLFEYIP-EDSLLFVDESHVTIPQISGMY-RGDFHRKATL-AEYGFRLPSCMDNRPLRF 515 +L +Y E++++FVDE +I + GM +F E G+ LP M R L F Sbjct: 295 VSLLDYFNRENTVIFVDELARSIER--GMVTETEFSESMKQRLEKGYILPGQM--REL-F 349 Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575 L + + + +L+ I E+ + + V+P + + ++ Sbjct: 350 SCKEILAKMEKMACISLVALDLKNSHVDIKEKFVIDSKTVNP------YNNSFDLLVKDL 403 Query: 576 NLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 + G R++L KR+AEDL M E+ + +++ G Sbjct: 404 TRYKKNGYRVILLSGSRTRAKRLAEDL-------------MAEELNAFYSEDFDHEVKPG 450 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660 +++ G +++G + P V I ++D Sbjct: 451 --EIMTGYGKIKKGYEYPLLKFVVISESD 477 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A + E + E N V Y H ++K E I+ G+ DVLV ++ GLDI Sbjct: 851 VAAKIAELVPEAN--VAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNT 908 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 + I DAD G L L +GR+ R + ++ D + K I Sbjct: 909 MIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEI 951 >gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ] gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ] Length = 1165 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 16/248 (6%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 AAIA+L + + L G+ GS +A++ + R +V+A ++ A +L E Sbjct: 13 AAIARLAEQLRHGAHPATLTGLAGSAPALAVAELSRLLPRQIVVIAADQAAADELTRELL 72 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 F NAV VS + P DT + +S + I R + LL+ + C V Sbjct: 73 FF---NAVN--VSPF---------PAWDTCPFEAASPHPDISGARLETLQRLLQGSPCTV 118 Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V+ V+ + I + +K GD +++ LL LV+ Y + RG+F V G Sbjct: 119 VAPVAALMQRIIPRSLLTGASCAIKPGDEPDREALLEGLVRMGYTNCPLVEERGSFAVRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 ++IFP L R+ FG+ +E + F PL + + ++ + + + + L Sbjct: 179 GILDIFPPSLPRPV-RIEFFGDTVETLRSFDPLNQRSLESLTCLNLLPSRELILSPAALQ 237 Query: 394 TAMKYIKE 401 + +KE Sbjct: 238 EFIPRLKE 245 >gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus thermodenitrificans NG80-2] gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus thermodenitrificans NG80-2] Length = 1177 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 68/316 (21%), Positives = 134/316 (42%), Gaps = 21/316 (6%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +++GIH R K QL+ G++GS ++ ++ + + RP +V+A N A ++Y + + Sbjct: 17 IIEGIHVRLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNLFQAQKIYDDLVSLLGP 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V + S + E V + ++ ++ M H A E +V Sbjct: 77 DDV-FLYSVNEVIAAEMAVASPELKAQR-------LEIMNHWAQ----EGKGVVVCPVAG 124 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + + + + +G ++ + V+ YKR G F + G ++I+ Sbjct: 125 LRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIRGGIVDIY 184 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P E + +R+ +F +IE I F P + V+ + I + ++ I Sbjct: 185 PLTAE-LPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEARQRGIERI 243 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 + L L ++ + QR+ + I +LE L Q IE +Y++ E Sbjct: 244 EAGLAASLENIKDDA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EKAA 295 Query: 460 TLFEYIPEDSLLFVDE 475 +L +Y+PED +L +DE Sbjct: 296 SLLDYLPEDGVLLMDE 311 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV + H + E I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus hydrogenoformans Z-2901] Length = 1160 Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/328 (22%), Positives = 152/328 (46%), Gaps = 24/328 (7%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +LL+GI+ ++++QL+ G G+ +TF MA V +A+ RP +V+ N+ +A ++ + + F Sbjct: 17 RLLEGIN-KKRIQLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFFLG 75 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +F Y + + + V E ++S E + R+ VV+ Sbjct: 76 DKTSRFF--YREGFLFDLTVREGG---ELKASRIELLKRLSRG-------EKPHTVVNYE 123 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + ++S+++ +L++GD VE +EL+ L + Y+R D G F G +++ Sbjct: 124 ALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVDQVEAPGQFSQRGGIVDV 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 + +V +R FG++I+ + + + N+ + IY V L + Sbjct: 184 YVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYPAEVAVAEEDLLLEVKQK 241 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I +++ ++ +L ++ + A RL+++ E+L G + IE Y Sbjct: 242 ISADIEQQVKKLIQQNKREAAGRLKEK---GAEVLNILGKSEVIEKLLPYFWS------G 292 Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGM 486 +L +Y ++ L+F+DE QI+ + Sbjct: 293 VSLLDYFGDEYLVFLDEPGRFGEQINSL 320 >gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter tengcongensis MB4] gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase [Thermoanaerobacter tengcongensis MB4] Length = 1169 Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/316 (19%), Positives = 141/316 (44%), Gaps = 22/316 (6%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G+ S K +++ + +V+ P+ + A ++Y + +F A Sbjct: 27 LIYGLADSQKAHIAHYLMKKFNKKVLVITPDDVEARRIYEDLYSFNEGEA---------- 76 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 + P+ D K + + +I R + L E VV+SV + + + Sbjct: 77 ----SLFPKRDIVFYKIDAASHEIVFERLKVIKRLSEDRPYAVVASVDALLDKMPPFYLF 132 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + LKIGD ++ + L L Y+R + +G F V G I+IFPS E+ +R+ Sbjct: 133 RKYQFSLKIGDKIDLGKFLKKLEVMGYERVQMVEGKGQFSVRGGIIDIFPS-TEEYPFRI 191 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F ++++ + F +T + I+ E + I+ + ++ + + + ++L L ++ Sbjct: 192 ELFDDEVDSLRTFDVMTQRSIKTAEEVFIFPATEFIVEEEHIKRGISSLSKDLNSYLSKI 251 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K + A++L ++ +E + +SI+ Y E ++ +Y+ ED++ Sbjct: 252 RKTKSGM-AEKLREKFDEIMEEISQGKKRESIKVLINYFY-----EDLQSIKDYVGEDAI 305 Query: 471 LFVDESHVTIPQISGM 486 + +DE++ ++S + Sbjct: 306 VILDETNRIKQRVSNL 321 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N R+ H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 859 NCRIAVAHGQMEENKLEQVMVDFLKGEYDVLVTTTIIETGLDIPNVNTIIVYDADKLGL- 917 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 918 ---AQLYQLRGRVGRS 930 >gi|160895086|ref|ZP_02075860.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50] gi|156863517|gb|EDO56948.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50] Length = 1174 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 103/443 (23%), Positives = 179/443 (40%), Gaps = 45/443 (10%) Query: 229 YDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 + +Y Y+ P D I R R R L+E C ++ +V ++ Sbjct: 69 FRFYDKAVYMYPSKDILFYSSDIHGNSITRRRMDIFRRLIEGEACTIILTVDALFDRMPD 128 Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 SY + +V ++ + ++ + L LV+ Y++ D G F V G I+IFP E+ Sbjct: 129 LSYIKKNVVTIREAEELDVEALKKCLVELGYEKADSVDGVGQFAVRGGIIDIFPL-TEEC 187 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 +R+ M+ +++ I F + + I V+ I+IY S V ++ +++E K Sbjct: 188 PYRIDMWDTEVDTIRSFDVESQRSIEQVQEIQIYPASEMVLSDRRTAQGIRKLEQEFKPY 247 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 +L KE + EA RL+++I E L +++Y Y + L + Sbjct: 248 YEKLRKEFKTEEAARLKKQIGEIKEQLTEFHGMAGVDSYVEYFYSKTVS----LLDCFRT 303 Query: 467 EDSLLFVDESHVTIPQISGMYRGDF-HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525 +++++ +DE+ I + Y F + E G+ LP M N L Sbjct: 304 KNTVILLDETS-RISDYADNYMATFLESMESRLEGGYILPGMM----------NILFTYP 352 Query: 526 IVVSATPGSWELEQCQGIIVEQ----IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581 +V L I+ + IR D V + S R E + +I ++ Sbjct: 353 AIVQKMQAFQTL--AFSILYHEDRYFTIRHDVTYDSRV-VNSYRNNFEALIADIGKWREK 409 Query: 582 GLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 RI+ T KRM E+LT + V +SE +R+ L + +V+V Sbjct: 410 NYRIIFISPSTTRAKRMVENLTSH------DVACFYSE--DTDRV-------LSEKEVMV 454 Query: 638 GINLLREGLDIPECGLVAILDAD 660 LR G + PE LV I + D Sbjct: 455 TTGRLRAGFEFPELKLVVINEGD 477 >gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70] gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70] Length = 1177 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 141/320 (44%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + +++G+ +R K QL++G++GS ++ ++ + +RP +V+A N A ++Y + Sbjct: 14 VRSIIEGVKARLKEQLVVGLSGSARSVFISSLYRETERPLLVIAHNLFQAQKIYDDLVQL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 A E F+ P + + + + ++ R L+ N +V+ Sbjct: 74 L--GAEEVFL-----------YPVNEVIAAEMAIASPELKAQRLEVMNYWLKHNKGVVIC 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + ++ L++ ++ + V+ YKR G F V G Sbjct: 121 PVAGLRRLLPPVSLWRDHMLTLEVHHHIDVEHYKQRFVQMGYKRVATVSTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E +R+ +F +IE I F + V+ + I + L Sbjct: 181 IDIYPLTAE-FPYRIELFDTEIESIRTFTADDQRSRDEVQQVTIGPADEMIVYGEMLERG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 ++ I+ L L +L+ E Q L + ++ +LE L+ Q IE +Y T Sbjct: 240 IERIEAGLAESLNKLKDEK---AKQLLLEHVSSELEQLK---QGQEIEQQYKY-TALFYN 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 E P +L +Y+PE+ +L +DE Sbjct: 293 E-PASLLDYMPENGILLMDE 311 Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AE++++ + E RV Y H + E + G++DVLV ++ G+DIP + Sbjct: 849 AEEISQLVPE--ARVTYAHGRMTENELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTL 906 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681 + DAD+ G + L Q GR R+ Sbjct: 907 IVYDADRMGL----SQLYQLRGRVGRS 929 >gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM 2522] gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM 2522] Length = 1185 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/330 (19%), Positives = 149/330 (45%), Gaps = 43/330 (13%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + +++G+ + Q++ G+ GS ++ +A + E +R +V+ N A +LY + + Sbjct: 14 VKSIVEGVEANISEQMVSGLAGSARSLLLATIFEKTKRSQLVITHNLFQAQKLYDDLTSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVV 275 + V Y+ + I E ++ + ++ R A + D IV+ Sbjct: 74 IGEDQV--------------YLYPVNELIASEIAVASPEMKGQRMEALNQWISNKDAIVI 119 Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + ++ + + +S + + + ++G +E L+ LV ++R D+ G F V G Sbjct: 120 APMAGVRRLLPPKSLWFEFQLSFQVGKDIELNTTLNQLVNMGFQRVDMVSTPGQFSVRGG 179 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ------KIRNVETIK--IYANSHYV 386 I+I+P E+ R+ +F +++ I F+ + Q ++ N+ K + HY Sbjct: 180 IIDIYPL-TEENPVRIELFDTEVDSI-RFFNVESQLSETQLQVVNIGPAKEVLLKEEHYQ 237 Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY- 445 +L A+ +++K + ++ +++ +++ +++ +L+ S S+ Y Sbjct: 238 HGASSLEQALATSLKKVKNKAVK----------EKMAEQVGHEIRLLKEKTSFDSMYKYM 287 Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 S + R TL +Y+P + L+F+DE Sbjct: 288 SLFYDTRY------TLLDYMPNNGLIFIDE 311 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 VR++H + E ++ + G DVLV ++ G+DIP + I +ADK G Sbjct: 861 VRFVHGRMTESELESVMLEFLDGNVDVLVTTTIIETGVDIPNVNTLIIDNADKMGL---- 916 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 SQLYQLRGRVGRS 929 >gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1] gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1] Length = 1169 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 107/516 (20%), Positives = 207/516 (40%), Gaps = 61/516 (11%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 LL+G+ + Q++ G++GS +++ A + Q +++ P + A L + P Sbjct: 16 HLLQGLEKGFRQQMVFGLSGSQRSYLFAGLAHGWQ-SVLIVTPGETEAGTLADDLATLLP 74 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +V+ F + P + ++ + + + E++ + + +VV+SV Sbjct: 75 EVSVQPFPVWQ--LLPYQVLAHSNEVLAQRLRVLEKLSTGKPT-----------VVVTSV 121 Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + E + V+L +G V+ ++L LV+ Y R D+ RG F G ++ Sbjct: 122 DALLRRLTPPEVFRCAKVKLSLGQQVDLEKLRFELVELGYTRVDLVEGRGQFSSRGGILD 181 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 I+P E + R+ F ++++ I F + + ++ I I V + Sbjct: 182 IYPMS-EALPVRIEFFDDEVDSIRHFEVDNQRSLDKLKEINISPCRELVVTPAGWQRCEE 240 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 E K +L +L++ G + +L + LE + +E Y Sbjct: 241 NYSLEFKNQLKKLQRSGSVDAVHQLSSQGAMLLEQIRRRVPFDGMEQLLYYFY-----PE 295 Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT-LAEYGFRLPSCMDNRPLRFE 516 P TL +Y LL VD+ + +++ + + T L G LP + + Sbjct: 296 PITLLDYFTAAPLLLVDDP-IRFKEVAETILKERNETYTDLLGKGKVLPGYFSS----YL 350 Query: 517 EWNCL-----RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED 570 EW L R TI S P + Q +RP +V+ P + + S E Sbjct: 351 EWRQLLASIERQQTIFCSFLPRN-----------PQYLRPQNVVNFPAKAMHSFLGHAEV 399 Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI---RVRYMHSEVKTLERIEIIRD 627 + DEI ++G I L V ++ A +L + L + I RV+ + EV+ Sbjct: 400 LADEIRHWRRRGYAITLLVSSEERAANLLKTLKDSKIDAFRVKQLDQEVR---------- 449 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 + +V++ + + G ++ LV I DA+ G Sbjct: 450 ----EGNVVITVGQMANGFELISARLVVITDAEIFG 481 >gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC 100599] gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC 100599] Length = 1182 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 53/333 (15%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 +A L KG+H QL+ G+ GS + MA + + RP V+ N A ++Y + Sbjct: 18 VAGLEKGLHE----QLVSGLAGSARQVLMASLQQMADRPVCVVTHNMYQAQKVYEDLIEL 73 Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 P + V E S PE R + +R+ T L Sbjct: 74 VPSDQVLLYPGNELIGSELAIASPEMLAQRIHVF-----------NRLAQGFTGFL---- 118 Query: 271 DCIVVSSVSCIYGIGSV----ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 V+ G+ + + + + +QL +G+ ++ + L ++ Y+R D+ + Sbjct: 119 -------VAPFAGLRRLVVPPQVWKEAQIQLSVGNELDIESFLLRCIELGYERVDMVERK 171 Query: 327 GTFRVCGDSIEIFPSHLEDVAW--RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 G + G I+++P D W R+ +F +I+ I F L+ + + +V+T + Sbjct: 172 GEMSIRGGIIDLYPI---DSEWPVRIELFDVEIDSIRTFDMLSQRSLESVQTYILGPAKE 228 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 + P L + ++++L L L K+G E ++ +RI D E ++ + + Sbjct: 229 MIASTPLLQESAVRLEQKLGETLANL-KDGAAKE--KVMERIGSDAERMKQGQRFAQLYS 285 Query: 445 YSR--YLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Y Y TG TL Y+P D+LL VDE Sbjct: 286 YISVIYPTG-------DTLLSYMPSDTLLLVDE 311 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++MAE ++ + + R+ H ++ E +I D G FDVLV ++ G+DIP Sbjct: 848 EQMAEQIS--MLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNV 905 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 + I +ADK G + L Q GR R S I YA Sbjct: 906 NTLIIYNADKMGL----SQLYQLRGRVGR---SNRIAYA 937 >gi|291540815|emb|CBL13926.1| hypothetical protein RO1_36780 [Roseburia intestinalis XB6B4] Length = 471 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 24/318 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L G+H + + G + K M V IV + A ++Y E++ F P Sbjct: 17 LSAGVHDLRGIAQISGCIDAAKPHIMYSVNNGSGNRIIVTFQEQ-RAKEIYEEYRFFDPK 75 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 AY P D + + R +A + L E + C ++++ Sbjct: 76 ---------------AAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTIITTFD 120 Query: 280 CIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + E + + + ++ +GD + +EL LV+ Y++ G F V G ++I Sbjct: 121 GLMNPMPMPEKFIREVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRGGILDI 180 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP ED +R+ +G++++ I F + + I N+E I IY V +K Sbjct: 181 FP-LTEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQEGIKR 239 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I +E +L KE + EA R + E G ++ Y Y E Sbjct: 240 ILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC-----EER 294 Query: 459 PTLFEYIP-EDSLLFVDE 475 +L +Y E++++FVDE Sbjct: 295 VSLLDYFNRENTVIFVDE 312 >gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521] gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1166 Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 95/502 (18%), Positives = 208/502 (41%), Gaps = 67/502 (13%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + G+ SG+ +T+ + E + R +++ + + A +Y + N V YF Sbjct: 32 IYGIAESGRVYTIDSIFENIDRSMVIVTQSDMEAKNIYEDL--LLYTNDVHYF------- 82 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YS 291 P + +I+ + R +L++ I+V+S+ + ++ Sbjct: 83 ------PAKEMVFYNIDAISGDLRWARLKVINEILKKKKKIIVTSIDAFSARYTPHKLFA 136 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 ++ K D + E+ L++ Y+R ++ +G F + G +++FP+ +R+ Sbjct: 137 DYTMKFKESDEINLIEVSKKLIQSGYERVEMVEGKGQFALRGGILDVFPT-CSAYPYRIE 195 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +FG++I+ I F + + I V+ I+++ + T++ KE+LK + Sbjct: 196 LFGDEIDSIRTFNTESQRSIDKVKKIEVFPAKEIIITDETISLG----KEKLKKEFDNIS 251 Query: 412 K-EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 K + ++L + +LE LE T + ++I++Y Y + +LF+Y+ +D L Sbjct: 252 KSDTDSARVEKLRNILNKNLESLEETSTFETIDSYLPYFC-----KETESLFDYL-KDCL 305 Query: 471 LFVDESHVTIPQISGMYRGDFHRKAT-LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 +D+ ++ Y +F T ++ G P + +++S Sbjct: 306 FIIDDVQRCEGKLDSTYL-EFEENFTAFSQRGDIFP----------------KQGELLIS 348 Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SART------QVEDVYDEINLAAQQG 582 + + + ++ +++ +P + S RT Q++ + DEI+ QG Sbjct: 349 KEEVIESFKDKKVVFLDGLVKKNSWFNPYTTVNISERTLNNYQGQLDLLIDEISDKKNQG 408 Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 +I++ T+ E L L +R I Y + + +++ G+ + G L Sbjct: 409 YKIVILSGTRARGERLVGTLRDRGIESSYKDT----------VDNIQYGEVVITFGNQL- 457 Query: 643 REGLDIPECGLVAILDADKEGF 664 G PE + I +DKE F Sbjct: 458 -HGFQYPEYKVCVI--SDKEVF 476 >gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2] gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2] Length = 1177 Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 94/454 (20%), Positives = 183/454 (40%), Gaps = 47/454 (10%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + G + S K + + I++A N++ A ++Y + FF + + + Sbjct: 36 ITGPSESQKAHIAYAICGHLNSKGIIVAYNELQARKIYDDLVYFFEKDVILF-------- 87 Query: 233 QPEAYVPRTDTYIEKESSINEQI---DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 V D + S+ E+I DR+ R IV S+ + + + E Sbjct: 88 -SSKEVMLHDIEAKSYDSVYERIVALDRIVKHDYR-------FIVTSAEALCHKLIRKEL 139 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + ++ ++ ++ LV Y+R +G F + G I+IFP + D A+R Sbjct: 140 FLSSCLKFCYDKRIDLALIIQKLVSIGYERVTTVEGKGQFAIRGGIIDIFPVNY-DSAFR 198 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F ++I+ I F L+ + + VE + I + L + I+ +L + Sbjct: 199 IELFDDEIDSIRTFDVLSQRSVEKVENVDILPAREIIYEPSDLERMISGIQNDLIAHKGK 258 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 + + + ++++RI++D++ + ++ Y Y+ E P L +YI +D Sbjct: 259 IGSKAKQDYLDKIDERISHDIDKFKEECYFPGMDKYIPYII-----ESPSLLTDYIDDDI 313 Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE---WNCLRPTTI 526 L+F DE ++ + + +L E G LP C D + FE W L+ Sbjct: 314 LVFFDEPKRFEQRVENILAENREMCKSLLEKGHLLPGCFD---IYFEFDYIWGKLKTHKS 370 Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQQGL 583 + T S E I +G + + S + +E + D+I + Sbjct: 371 IYFNTIMSDE------------ILASGSQKYNIASKLLNSYQGNLELIVDDIKYWKGKNS 418 Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 R+L+ TK E L + L ++I Y+ EVK Sbjct: 419 RVLILAGTKSRGEMLADTLRTKDIESVYI-DEVK 451 >gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03] gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03] Length = 1171 Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/309 (20%), Positives = 131/309 (42%), Gaps = 27/309 (8%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 +EK LL GV + + +++ QRP I++ ++ A L E N P N V F Sbjct: 22 KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQMLLDELGNLLPDNMVFSF- 80 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286 P T T I +++++ ++ + R +VV+ + Y + Sbjct: 81 -------PVDATIATQTAIASPDELSQRLQTLQFLTEK----RAGIVVVTPQALQYKLSD 129 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +++ K + EL + + Y+R++I G F GD ++++P E+ Sbjct: 130 PRDFTKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN- 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 +R+ FG++++ + EF T + + + + I V L+ A+K IK+++K Sbjct: 189 PFRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAVKKIKQDMKKS 248 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + + E ++ +++LE G ++ YL ++ L +Y+ Sbjct: 249 IAKEEN---------VKNHFVKAIDLLEADGLPENYAFLVDYLLPKS-----FNLIDYLD 294 Query: 467 EDSLLFVDE 475 ++ LL D+ Sbjct: 295 KNGLLLFDD 303 >gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio proteoclasticus B316] gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio proteoclasticus B316] Length = 1191 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 78/328 (23%), Positives = 143/328 (43%), Gaps = 28/328 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 I++ + + A ++Y ++K F+ N Y +YQ + + + +I Sbjct: 53 IIVTYSDLRAKEIYEDYK-FYDRNVTVYPAKDLIFYQADVH--------------SNEIV 97 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R R R LLE VV++ + + E I+++ +++ E+ L Sbjct: 98 RQRIRTMRRLLEGRPVTVVTTFAALMAPQIRPEIIRDNILEIDKHKPIDEIEIAKRLTTM 157 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y R G F V GD +++F E+ +R+ ++G++I+ I F L+ + + +E Sbjct: 158 GYIRNYQVEGPGEFSVRGDIVDVF-DLTEENPFRIELWGDEIQSIRSFDILSQRSLEKLE 216 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +I+IY S + L+ M I+E+ R+ L E + EA +L+ + E L Sbjct: 217 SIEIYPASEIILTEQLLSEGMDRIQEDTDKRVELLRSEFKTKEAHQLKTQTEELREQLFE 276 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRK 494 S ++E+Y RY T+ E P+ S +F+DE + + + +F Sbjct: 277 LKSLVNLESYIRYFY-----PDTVTMQEMFPKGKSCIFIDEPQ-RVQEHAWAVETEFKES 330 Query: 495 AT-LAEYGFRLPSCMDNRPLRFEEWNCL 521 T AE G+ LP MD L + NC+ Sbjct: 331 MTHRAEKGYTLPGQMD---LLYSIDNCI 355 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++K E I+ D G DVLV ++ GLDIP + I D+DK G L Sbjct: 873 VAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIETGLDIPNVNTMIIHDSDKMG-LSQL 931 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSI 697 L +GR+ R + ++ D + K + Sbjct: 932 YQLRGRVGRSNRTAYAFLMYKKDKMLKEV 960 >gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1] gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1] Length = 1173 Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/240 (20%), Positives = 108/240 (45%), Gaps = 7/240 (2%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295 Y+P D I R R A + +++ V ++ + + + + Sbjct: 78 YIPAKDPLFYTADVHGNAIARDRMLAIKKIVDDKCGTFVMTIDAVMDQVVPLSDIKNHKM 137 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 K+G+++E+ + V + Y++ G F V G I+IFP + ++ +R+ ++G+ Sbjct: 138 TFKMGETLEEATIAEEFVARGYEKAPFVEAPGEFAVRGGIIDIFP-YTQESPYRIELWGD 196 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ I F + + I V+T+ IY S + +P + ++ ++E+ + + +KE + Sbjct: 197 EIDSIRSFDKESQRSIEEVDTLTIYPASEIILNQPRIEHGLRNMEEDYEKLSQKFKKEKK 256 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + RL + + E L +E Y Y E + +Y PE+S++++DE Sbjct: 257 YDQEARLRKEMDRVREELRELHMLIGVEGYLPYFY-----ENTECILDYFPEESMIYMDE 311 Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V + H ++K E EI+ + DVLV ++ GLDIP + I DA++ G L Sbjct: 862 DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLG-L 920 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695 L +GR+ RN + ++ +T+ K Sbjct: 921 SQLYQLRGRVGRSNRNAFAFLMYKKNTLLK 950 >gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583] gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583] Length = 1182 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 30/324 (9%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRP-------AIVMAPNKILAAQLYSEFKNFFPHN 220 E + L G + K M + EAM++ +++A N + A +LY +++ Sbjct: 25 EGILQLSGCVETQKAHIMYGLFEAMKKKTGQEKANCLIIAENDLKAKELYEDYRL----- 79 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS- 279 Y + + P D + + + R +LLE+ V++S+ Sbjct: 80 ----------YNREVMFYPAKDLIFFEADVHGNLLTKERMKVLAALLEKKGVTVITSMGG 129 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 C+ + +E+ + ++ + ++ +L L+ Y++ G F G I+IF Sbjct: 130 CMDYLLPLETIEKHVLHFQSDSPLDMDKLKKQLLGMGYEKNAQAEAPGQFSFRGGIIDIF 189 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P ED R+ ++G++I+ I F + + I N++ I IY + + L +K I Sbjct: 190 PL-TEDNPVRIELWGDEIDSIRSFDAESQRSIENLDEITIYPAAEMLLSDEVLKKGIKKI 248 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 +++ + + EA RL+Q +T LE L + E++ RY + Sbjct: 249 QKDRDAAVQKFRDAFLTEEAGRLKQVVTETLENLTEFHDFSAAEHFLRYFY-----KDVV 303 Query: 460 TLFEYI-PEDSLLFVDESHVTIPQ 482 T +Y E++L+ +DE++ + Q Sbjct: 304 TFTDYFDTENTLILLDETNRLLEQ 327 >gi|291518338|emb|CBK73559.1| Transcription-repair coupling factor (superfamily II helicase) [Butyrivibrio fibrisolvens 16/4] Length = 723 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/285 (21%), Positives = 128/285 (44%), Gaps = 32/285 (11%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +++ +++ A +LY E++ FF ++ V Y P D + + Sbjct: 51 LIITSDELKARELYEEYR-FFDNDVV--------------YFPAKDFLFYQSDIRGNALT 95 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R R A +++ N C V++++ + + ++ + + IV + D+VE + L LV Sbjct: 96 RERMKAIEAVISNNSCTVITTIDALMNKLPALSYFEEGIVAVSDTDTVELEALRRKLVAM 155 Query: 316 QYKRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 Y +++G G F V G I+++P E + R+ ++G++++ I + P + I N Sbjct: 156 GY--ENVGTCEHPGEFAVRGGIIDVYPLTAE-LPVRIELWGDEVDSIRTYDPSNQKSIEN 212 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 + + I+ + + + I++E R KE + EA L+ TY ++ Sbjct: 213 INAVLIFPAVELILSAEEVAAGLSKIEKERDERYEAYRKEMKTEEAFHLK---TYADRVI 269 Query: 434 ETT---GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 E T G Q +E + Y + + +++P+ + +F+DE Sbjct: 270 EETREWGLSQELETHLTYFC-----DKLGSFADFMPKGTYVFIDE 309 >gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2] gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2] Length = 1175 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 71/323 (21%), Positives = 143/323 (44%), Gaps = 25/323 (7%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A A + GI S K QL+ G++GS + MA + E RP +VM N A ++ + + Sbjct: 13 ADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHNMFAAQKIADDLQ 72 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 + V + P + + I +++++ID + A + +V Sbjct: 73 EALSPDQVLLY--------PANELVAAEAAISSPETLSQRIDVLIRCA-----QGFRGVV 119 Query: 275 VSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V S + + + E++ + V+LK G++++ + L +V+ Y+R + RG V G Sbjct: 120 VVPFSGVRRLLPIPETWREARVELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+ +P +RV +F ++I+ I F P + + V+ + + + ++ Sbjct: 180 GIIDFYPMTTR-WGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTVTPCKEVIASHQRMD 238 Query: 394 TAMKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 A L+ +L ++ +++ + Q L++ I ++E+L I Y L Sbjct: 239 QAADAAAMLLEEQLDKMTDRQAK----QHLKEEIHREIELLREHVYFDEIYKYISLLYPE 294 Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475 TL +Y+P D++L +DE Sbjct: 295 R-----KTLADYMPADTILIIDE 312 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 847 DAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 905 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 906 ---SQLYQLRGRVGR---SNRIAYA 924 >gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1073 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 15/204 (7%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 L G+ + + LL G++GS K F ++++++ R + + P + A L + + F Sbjct: 11 LCGVLQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPG 70 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 + F++ Y+ E + + + S+ +D R SA I+ + S Sbjct: 71 RLFMFLARDFYFAKENL---STLEVGRILSLQHCLDHPRQSA---------IIIATPGSF 118 Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 IY + + + + + L+ G EQ+E+L LV Y+R D +G F V G I+IFP Sbjct: 119 IYPLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFP 178 Query: 341 -SHLEDVAWRVSMFGNDIEEISEF 363 H E RV FG IE I F Sbjct: 179 LGHKEPC--RVEFFGELIESIHRF 200 >gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM 2782] gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM 2782] Length = 1174 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 135/304 (44%), Gaps = 19/304 (6%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 ++G + S K + + +QR + + N++ A + Y +F +FF + V Y Sbjct: 30 VIGPSDSQKVHMIYSLCTHLQRRGLYVTYNEMQARRAYEDF-SFFLGDDVLY-------- 80 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 Y P+ E+ N+ I + + R L IV+S+ + I I VE + Sbjct: 81 ----YPPKETMLYNIEARSNDIIYQRTRTLLRCLEGNYKLIVMSAEALIQMISPVELFRG 136 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 +V +G ++ EL+S LV Y+R + + F V G I+IF + E R+ + Sbjct: 137 GVVDFSVGLQIDLDELVSKLVLYGYERVEAVEGKAQFAVRGGIIDIFAVNSEH-PVRIEL 195 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 F +++ I F T + ++E +I V + + IK++L + +L++ Sbjct: 196 FDTEVDSIRYFDETTQRSTNSIEECRIAPARDVVYKDISKEAIVSKIKKDLADYVKKLKQ 255 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + + + +R+ D++ L I+ Y Y+ E P ++ +YI +S++ Sbjct: 256 KDNSEGVKNISKRVEEDIDNLVEHHYFPGIDRYLPYIL-----ETPASVIDYIERESIVV 310 Query: 473 VDES 476 +DE+ Sbjct: 311 LDET 314 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E +++ G++DVLV ++ GLD+P + + DAD+ G Sbjct: 864 RVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGL--- 920 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 921 -SQLYQIRGRVGRS 933 >gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium 6_1_63FAA] gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium 6_1_63FAA] Length = 1182 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 30/324 (9%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRP-------AIVMAPNKILAAQLYSEFKNFFPHN 220 E + L G + K M + EAM++ +++A N + A +LY +++ Sbjct: 25 EGILQLSGCVETQKAHIMYGLFEAMKKKTGQEKANCLIIAENDLKAKELYEDYRL----- 79 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS- 279 Y + + P D + + + R +LLE+ V++S+ Sbjct: 80 ----------YNREVMFYPAKDLIFFEADVHGNLLTKERMKVLAALLEKKGVTVITSMGG 129 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 C+ + +E+ + ++ + ++ +L L+ Y++ G F G I+IF Sbjct: 130 CMDYLLPLETIEKHVLHFQSDSPLDMDKLKKQLLGMGYEKNAQAEAPGQFSFRGGIIDIF 189 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 P ED R+ ++G++I+ I F + + I N++ I IY + + L +K I Sbjct: 190 PL-TEDNPVRIELWGDEIDSIRSFDAESQRSIENLDEITIYPAAEILLSDEVLKKGIKKI 248 Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459 +++ + + EA RL+Q +T LE L + E++ RY + Sbjct: 249 QKDRDAAVQKFRDAFLTEEAGRLKQVVTETLENLTEFHDFSAAEHFLRYFY-----KDVV 303 Query: 460 TLFEYI-PEDSLLFVDESHVTIPQ 482 T +Y E++L+ +DE++ + Q Sbjct: 304 TFTDYFDTENTLILLDETNRLLEQ 327 >gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC 25986] Length = 1210 Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 17/226 (7%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+ + G+ + E V L V+ SG+T A RP + + + A + Sbjct: 15 ALQAVEAGLDAGEDVTL--AVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARSLAA 72 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 + V F P Y +E + ++ + R A ++ ++CI+V Sbjct: 73 YVGLAHVCRF-------------PERKDYPWREQAPDDAVVAQRCEALGRIVRGDNCIMV 119 Query: 276 SSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 +S + + + VES +G+ + E+ LV Y G FRV GD Sbjct: 120 ASARALLRCVPPVESRYWESTTFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVHGD 179 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 ++E+FP+ E R+ FG++I+ I TGQ I N ++I+I+ Sbjct: 180 TVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIF 224 >gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium 5_1_63FAA] gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium 5_1_63FAA] Length = 948 Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/240 (20%), Positives = 108/240 (45%), Gaps = 7/240 (2%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295 Y+P D I R R A + +++ V ++ + + + + Sbjct: 78 YIPAKDPLFYTADVHGNAIARDRMLAIKKIVDDKCGTFVMTIDAVMDQVVPLSDIKNHKM 137 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 K+G+++E+ + V + Y++ G F V G I+IFP + ++ +R+ ++G+ Sbjct: 138 TFKMGETLEEATIAEEFVARGYEKAPFVEAPGEFAVRGGIIDIFP-YTQESPYRIELWGD 196 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ I F + + I V+T+ IY S + +P + ++ ++E+ + + +KE + Sbjct: 197 EIDSIRSFDKESQRSIEEVDTLTIYPASEIILNQPRIEHGLRNMEEDYEKLSQKFKKEKK 256 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + RL + + E L +E Y Y E + +Y PE+S++++DE Sbjct: 257 YDQEVRLRKEMDRVREELRELHMLIGVEGYLPYFY-----ENTECILDYFPEESMIYMDE 311 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V + H ++K E EI+ + DVLV ++ GLDIP + I DA++ G L Sbjct: 862 DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLG-L 920 Query: 666 RSKTSLIQTIGRAARN 681 L +GR+ RN Sbjct: 921 SQLYQLRGRVGRSNRN 936 >gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis HTE831] gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus iheyensis HTE831] Length = 1173 Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 70/322 (21%), Positives = 140/322 (43%), Gaps = 27/322 (8%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ S K Q++ G++GS ++ ++ + E+++RP +++ A QLY +F Sbjct: 14 IHSIVNGVTSGMKEQMIAGLSGSARSLVISAIHESIRRPVLIVTHQLAQAQQLYDDFVEL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVV 275 V Y+ + I E +I + ++ R A I++ Sbjct: 74 VDDERV--------------YLYPVNELIASEIAIASPELRAQRIEALTEWTRHKSGILI 119 Query: 276 SSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + V+ + I ++Y + K+G+ ++ LSSLV Y+ + G F G Sbjct: 120 APVAALKRILPPQNYWDNYQLLFKLGNDIKIDHYLSSLVDMGYEHASMVTSPGEFSKRGG 179 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 I+I+P E R+ +F +++ I F + + + ++ + I S + L Sbjct: 180 IIDIYPI-TEKHPIRIELFDEEVDSIRYFDAESQRSLDKLDEVTIGPASELLLTDEDLLK 238 Query: 395 AMKYIKEELKMRLIELEKEGRLLEA-QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 + ++E L L ++ K EA ++L + I +D+ + Q + Y YL Sbjct: 239 TSEQLEEALATTLKKVNKP----EAKEQLVEVIEHDITRFKQLERFQEMYKYIGYLYSN- 293 Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475 P +L +Y+P + L+F DE Sbjct: 294 ----PASLLDYLPSNGLVFFDE 311 >gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis 101-4-CHN] gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis 101-4-CHN] Length = 1179 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 62/314 (19%), Positives = 136/314 (43%), Gaps = 24/314 (7%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 G+H + QL+ GV GS KT +A + + + P +V+ + L ++ +N P V Sbjct: 19 GLHDGGR-QLVTGVGGSAKTALLATIQQNSKTPQVVVCDSLFHMQSLAADLENLLPETVV 77 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 F P ++ + ++ + R A +LL ++V++ + Sbjct: 78 YQF-------------PVEESLAMEIATSSPDFRLQRVQAMNALLNGQSAVIVTATGGLR 124 Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + E++S +++KIG ++ ++ L+ Y+RQ + + G F V G I+I+ Sbjct: 125 RPLVAPETFSDARLEIKIGGEIDPQQTAQKLMMMGYQRQKMVMAPGDFAVRGSIIDIYAL 184 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 + + R+ +F +++ + F + + I NV+ + + + + + L + + Sbjct: 185 NTK-YPVRIDLFDTEVDSLRYFEANSQRSIENVQAVTVLPATDLIIDQQRLPALQQQLTT 243 Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 E + + E +A+++E LE L+ + Y+ + + P L Sbjct: 244 EYETLHEQASDEQ---DARQIENHFRPLLEGLKAGNLENGLLTYADMVYPQ-----PANL 295 Query: 462 FEYIPEDSLLFVDE 475 +Y+P D L VD+ Sbjct: 296 LDYLPADGTLIVDD 309 Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV +H ++ + ++ D G++DVLV +++ G+DIP + + +AD+ G Sbjct: 857 RVADIHGQMSEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVENADRMGL--- 913 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 914 -AQLYQIRGRIGRS 926 >gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans ISDg] gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans ISDg] Length = 1179 Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 23/315 (7%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ N I A ++Y + K + N Y P D I Sbjct: 53 LVITYNDIKAKEIYEDLK-LYDRNVYLY--------------PAKDIIFYSADIHGNAIV 97 Query: 257 RMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R R ++LLER VV+++ + + ++ S I+ +K ++E + L L+ Sbjct: 98 RERMRILKNLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHL 157 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+RQ G F + G I+I+P E+ +R+ ++G++++ I F + + I V Sbjct: 158 GYERQGQVENPGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVS 216 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 T IY S + L + + E K + +L E + EA R+ Q + E LE Sbjct: 217 TAVIYPASEIILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLEC 276 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRK 494 ++++Y R+ + + F+Y D S++F DE + + ++ Sbjct: 277 LQGSLNLDSYIRFFYDKT-----CSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESM 331 Query: 495 ATLAEYGFRLPSCMD 509 E G+ LPS MD Sbjct: 332 VGRIEKGYILPSQMD 346 >gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942] gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942] Length = 1177 Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 71/323 (21%), Positives = 135/323 (41%), Gaps = 35/323 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G+H + QLL G++GS ++ + + E + +P ++ N A ++ + Sbjct: 17 IVTGLHEGLREQLLAGLSGSARSVFTSALSEKINQPIFLITHNLYQAQKVTEDLTALLED 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D I+R+ T I Sbjct: 77 QSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTAGET--------PI 117 Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 VV+ V+ + + V+ + + + G+ +E +L S LV+ Y+R D+ G F + Sbjct: 118 VVAPVAAVRRMLPPVDVWKNSQMTITTGEDIEPDQLSSRLVEVGYERSDMVSAPGEFSIR 177 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 G I+I+P E R+ +F +++ I F + I + ++ I + Sbjct: 178 GGIIDIYPLTAEH-PVRIELFDTEVDSIRTFNSDDQRSIETLTSVSIGPAKELIIRAEEK 236 Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 A++ I + L L +++ + + + L I++D E L + Q + Y Y Sbjct: 237 ARAIEKIDKGLAASLKKVKADK---QKEILHMNISHDKERLSEGQTDQELVKYLSYFY-- 291 Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y P D+LL +DE Sbjct: 292 ---EKPASLLDYTPPDTLLLLDE 311 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + D DK G Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF 3008A-a] gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF 3008A-a] Length = 1110 Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus H10] Length = 1165 Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 129/308 (41%), Gaps = 29/308 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ ++ P I++ N+ A LY E P +V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQIVTELKTPLILVEENENKAQNLYGELSAILPDGSVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I+ A LL + IVV++ + Y + Sbjct: 81 -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + ++Q + G E +L LV YK++ + G F + GD ++++P E+ Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ I EF T + + ++ ++I A V + TA + I++++ Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDMG--- 246 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 + ++ T L+ L G + YL + P +L EY+ + Sbjct: 247 ------DAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKK-----PSSLLEYLDK 295 Query: 468 DSLLFVDE 475 + + +D+ Sbjct: 296 NGQILIDD 303 >gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2062A-h1] gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2062A-h1] Length = 1110 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2052A-d] gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2052A-d] Length = 1110 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2053A-b] gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF 2053A-b] Length = 1110 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM 2379] gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM 2379] Length = 1177 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 33/326 (10%) Query: 152 DQPAAI---AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 D P+ I A +L + + LL G+ GS +A ++ R +V+ P++ A + Sbjct: 5 DTPSRISHTATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADE 64 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 E F + +D A P D + ++ R+++ R+++ Sbjct: 65 FLRELTFFASPSHAPLSFPAWDMAPFSATSPHPDISGARLDTLF----RLQNGLARAVV- 119 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 V +++ + G G S +V G+ E+ ELL LVK Y + RGT Sbjct: 120 ---MPVAAALQRVLGRGLFSESSCYLVS---GEEFERDELLGRLVKMGYANVPLVEDRGT 173 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 F V G ++IFP +L R+ FG+ E I F PLT + + +E + + + + Sbjct: 174 FAVRGGILDIFPPNL-SAPVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREII-- 230 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 + + I LK +LE + A R + LE L++ + +E Sbjct: 231 --LTDGVLADIAPRLKGCCDDLE-----IPANRRRE----ILENLKSAVYFRGVEYLQPL 279 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVD 474 L +PG T+F+Y P+ SL +D Sbjct: 280 L---HPGL--ETIFDYAPDASLALLD 300 >gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV 09V1-c] gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV 09V1-c] Length = 1110 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV 03V1-b] gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV 03V1-b] Length = 1110 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius C56-YS93] gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1] gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius C56-YS93] gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1] Length = 1177 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ GI + K QL++G++GS ++ ++ + + RP +V+ N A ++Y + Sbjct: 14 IRSIIGGIEAGLKEQLIVGLSGSARSVFISSLYKETDRPLLVITHNLFQAQKIYDDLVQL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P V T+ I ++++ M + +R+ +V+ Sbjct: 74 LGTEEV--------FLYPVNEVIATELAIASPELKAQRLEVMNYWT-----KRDKGVVIC 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + I+ L++ +++ + V+ YKR G F V G Sbjct: 121 PVAGLRRLLPPVSLWKNNILTLEVQQNIDVEYCKKQFVQMGYKRVATVSAPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E + +R+ +F +IE I F + V I I + L Sbjct: 181 IDIYPLTAE-LPYRIELFDTEIESIRTFTADDQRSRDEVRQITIGPADEMIVYGEMLERG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 + I+ L L +L+ E Q L + I+ +LE L+ Q IE +Y+ Sbjct: 240 IARIEAGLTESLHKLKDEK---AKQLLLEHISSELEQLK---QGQEIEQQYKYMALFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 E P +L +Y+PE+ +L +DE Sbjct: 292 EEPASLLDYMPENGILLMDE 311 Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AE++++ + E RV Y+H + E + G++DVLV ++ G+DIP + Sbjct: 849 AEEISQLVPE--ARVTYVHGRMSETELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTL 906 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681 + DAD+ G + L Q GR R+ Sbjct: 907 IVYDADRMGL----SQLYQLRGRVGRS 929 >gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII 60-B] gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII 60-B] Length = 1110 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV 11V1-d] gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV 11V1-d] Length = 1110 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1 str. 28L] gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1 str. 28L] Length = 1095 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 17/209 (8%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + GV GS K+F AK I MQ P +++A + AQ ++ + P + F + Sbjct: 29 IYGVGGSAKSFITAKGIRNMQHPVLIIAVGREQVAQWMADLQFLLPEMPLYTF----PFV 84 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI--YGIGSVESY 290 E + T ++ + EQ+ + H L ER CIV+++ Y I S E+ Sbjct: 85 TSEVFT----TAVKSLERVAEQMKVLAH-----LRERKPCIVIAAAEEAAQYTI-SPENL 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 V L +S E++ L+ L++ Y+R D+ RG F V GD I+I+ + D R+ Sbjct: 135 DAAAVPLCCHESYERQVLVEQLIQSGYERVDLVERRGHFSVRGDIIDIYAVNHRD-PLRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+ ++ + F + VE ++I Sbjct: 194 EFFGDTLDSMRFFEVQRQISCQAVEQVRI 222 Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RM E+L L E IR+ + LE E + D GK+D+L+ +L+ GLD+ Sbjct: 772 RMQEELAALLPELTIRMAHGQMSGGKLE--EAMFDFYEGKYDLLLCSSLVENGLDVANAN 829 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I DAD G + L Q GR R+ Sbjct: 830 TILIYDADHFGL----SQLYQMRGRVGRS 854 >gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense DCB-2] gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense DCB-2] Length = 1197 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 82/347 (23%), Positives = 154/347 (44%), Gaps = 42/347 (12%) Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 K I +E Q++ +TGS K A++I+ +P +++ ++ LA + ++ +++ P Sbjct: 38 KAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGED 96 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSC 280 V YF S ++P +E++I +R+R L + N C +VV +++ Sbjct: 97 VLYFPS-------SEWLPFEVLGKSRETTI----ERIR--VLNRLAQDNQCTVVVPALAV 143 Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 S + + I++LK G S + K+L L Y+R D+ +G F + G ++I P Sbjct: 144 NQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAP 203 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 L+ RV F ++++ I F T + ++++KI V L ++ Sbjct: 204 --LDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVR 261 Query: 401 EELKMRLIELEKEGR-------LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 + + + L + GR + +AQR+E+R L+T +SI Y L Sbjct: 262 AQARKQAGRLNRSGRSDVAEQVMKQAQRIEER-------LKTGRVDESIYPYLSLLE--- 311 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 EP F + +D + +DE Q+ +F +K L EY Sbjct: 312 --EPLEPFFSLLSQDHYVILDEPLRLKEQL------EFQQKERLEEY 350 >gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum WAL-14673] gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum WAL-14673] Length = 1179 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 131/304 (43%), Gaps = 21/304 (6%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS------YYDY--YQPEA 236 M + +E Q P +V A L SE P + + Y DY + P+ Sbjct: 18 MNRELERGQGPLLVSGCMDSQKAHLISELTKEIPWKLIVTYDDQRARELYEDYRCFSPDV 77 Query: 237 YV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294 Y+ P D + R R + L E + V+++V + + +E+ + Sbjct: 78 YLYPARDLLFYSSDIHGNLLTRQRMQVMKHLAEESGGAVITTVDGLMDHLLPLENLKRQC 137 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 +++ G++++ +L SL Y+R G F V G I+I+P ED+ +R+ ++G Sbjct: 138 LRVGSGEALDVDKLKVSLTGMGYERVAQVDGMGQFSVRGGIIDIYPL-TEDLPFRIELWG 196 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 ++++ I F P + + + ++ IY + V R ++ I++E + L ++ Sbjct: 197 DEVDSIRTFDPESQRSVEQLDEALIYPATELVLTREEAAAGIQKIEKEKNKYVKSLREQM 256 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL--FEYIPEDSL-L 471 + EA R+E I+ E L+ + ++ RY P T+ Y PE L + Sbjct: 257 KTEEAHRIESVISELTEGLKEGWRVHGLGSFIRYFC-------PETVSFLRYFPEGRLTV 309 Query: 472 FVDE 475 F+DE Sbjct: 310 FMDE 313 Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ E I+ D G DVLV ++ GLDIP + I DAD+ G Sbjct: 866 VTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGL---- 921 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 922 SQLYQIRGRVGRS 934 >gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10] gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10] Length = 1175 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 31/350 (8%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 G+H+ + QL+ G++GS + MA + + QRP +V+ N A ++ + + + V Sbjct: 21 GVHAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHNMFSAQKIADDLQEALSSDQV 80 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 + P + ++ + ++ ++ID + A R IVV+ S + Sbjct: 81 LLY--------PANELVAAESAVSSPETLAQRIDVLVRCA-RGF----RGIVVAPFSGVR 127 Query: 283 G-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + E S + L G ++ L+ +++ Y+R + RG V G I+ +P Sbjct: 128 RLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMGYERVERVERRGEMSVRGGIIDFYPM 187 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 +A+RV +F DI+ I F P + I V + I + L+ + + Sbjct: 188 TTA-MAYRVELFDEDIDSIRTFDPTDQRSIDKVREVMITPCKEIIADAERLSRTAETV-- 244 Query: 402 ELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 +RL+E + E R+ + Q RL I ++EML I Y L P Sbjct: 245 ---VRLLEAQLE-RMSDRQAKLRLRDEIHREVEMLRERIYFPEIYKYISLLY------PE 294 Query: 459 PT-LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507 T L++Y+P+D++L +DE + + R + L + G LP Sbjct: 295 KTNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLPDL 344 Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 849 RVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924 >gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC 33200] gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC 33200] Length = 1165 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/308 (21%), Positives = 127/308 (41%), Gaps = 27/308 (8%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 EK LL GV + ++++A Q+P I++ N+ A L E N P + V F Sbjct: 23 EKRSLLTGVNSGAFAAVLMQMLKAWQQPLILVEDNEEKAQTLLDELGNLLPDDMVFGF-- 80 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P T T I +++++ + A + R +VV+ + Y + Sbjct: 81 ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ K + +L L + Y+R+ I G F GD ++I+P E+ Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILDIYPWDQEN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++++ + EF T + + +++I I V A++ IK+++ + Sbjct: 190 IRIEFFGDEVDTVKEFDSATQRSLEEIDSISIGPALDRVFSPHNFQEAVEKIKQDMSESI 249 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 E E ++ +++LE G + YL R+ L +Y+ + Sbjct: 250 AEKES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295 Query: 468 DSLLFVDE 475 D LL D+ Sbjct: 296 DGLLLFDD 303 Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ Y+H + + +I+ +FD+LV ++ G+D+P + + DAD G L Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909 Query: 668 KTSLIQTIGRAAR 680 L IGR+AR Sbjct: 910 LYQLRGRIGRSAR 922 >gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum H10] gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum H10] Length = 1174 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 137/305 (44%), Gaps = 21/305 (6%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 ++G + S K + + +Q+ + + N++ A ++Y +F +FF + V Y+ Sbjct: 30 VIGPSDSQKVHLIYSLCTHLQKRGLYITYNEMQARRVYDDF-SFFLGDDVLYY------- 81 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYS 291 P +T + + + I R + LE N +V+S+ + I I VE + Sbjct: 82 ------PPKETMLYNVEARSNDIIYQRTKTLLNCLEGNYKMVVMSAEALIQMISPVELFR 135 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + I+ +G V EL+S LV Y+R + + F V G I++F + E R+ Sbjct: 136 EGIMDFYVGSQVNLDELVSKLVLYGYERVESVEGKAQFAVRGGIIDVFAVNSEH-PVRIE 194 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F D++ I F T + +++ +I V + + IK++L + +L+ Sbjct: 195 LFDTDVDSIRHFDETTQRSTNSIDECRIAPARDVVYKEVSREGIISKIKKDLADYIKKLK 254 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 ++ + + +R+ D++ L I+ Y Y+ E P ++ +YI +S++ Sbjct: 255 QKENREGVKNISKRVEEDIDSLIEHHYFPGIDRYYPYIL-----ESPASVIDYIESESII 309 Query: 472 FVDES 476 +DE+ Sbjct: 310 IMDET 314 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E +++ G++DVLV ++ GLD+P + + DAD+ G Sbjct: 864 RVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGL--- 920 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 921 -SQLYQIRGRVGRS 933 >gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum DSM 15641] gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum DSM 15641] Length = 1155 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 25/237 (10%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 +G+ S + F A +P +V+ + AA + N V F DY Sbjct: 31 MGLAASARPFFTAARFARTPQPTLVIVAGEESAADFARTLSAYVGDNRVLRFFERKDY-- 88 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-GSVESYSQ 292 P A P ++ R A +L+E +CIVV+S + + G V S Sbjct: 89 PTASTP-----------VDVHAVACRLQALHALVESRECIVVASSRALMRLMGPVRSRFY 137 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDI---GIIR-------GTFRVCGDSIEIFPSH 342 + + G V+ ++ + +++ G + GTF V G +I+++P + Sbjct: 138 LPLTFTAGMDVQSGSGERTIASFEAATEELVACGYLNTGELSGPGTFCVGGGTIDVWPGN 197 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 L R+ FG++++EI P TGQ I ++ + IY Y+ R L+ A + + Sbjct: 198 LS-YPVRIDFFGDEVDEIRRIVPATGQTIARIDKVDIYPLREYMPDRAALDRARRIL 253 >gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51] gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1178 Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/347 (23%), Positives = 154/347 (44%), Gaps = 42/347 (12%) Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 K + +E Q++ +TGS K A++I+ +P +++ ++ LA + ++ +++ P Sbjct: 19 KAVSYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGED 77 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSC 280 V YF S ++P +E++I +R+R L + N C +VV +++ Sbjct: 78 VLYFPS-------SEWLPFEVLGKSRETTI----ERIR--VLNRLAQDNQCTVVVPALAV 124 Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 S + + I++LK G S + K+L L Y+R D+ +G F + G ++I P Sbjct: 125 NQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAP 184 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 L+ RV F ++++ I F T + ++++KI V L ++ Sbjct: 185 --LDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVR 242 Query: 401 EELKMRLIELEKEGR-------LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 + + + L + GR + +AQR+E+R L+T +SI Y L Sbjct: 243 AQARKQAGRLNRSGRSDVAEQVMKQAQRIEER-------LKTGRVDESIYPYLSLLE--- 292 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 EP F + +D + +DE Q+ +F +K L EY Sbjct: 293 --EPLEPFFSLLSQDHYVILDEPLRLKEQL------EFQQKERLEEY 331 >gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5] gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5] Length = 1175 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/350 (22%), Positives = 148/350 (42%), Gaps = 31/350 (8%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 G+H+ + QL+ G++GS + MA + + QRP +V+ N A ++ + + + V Sbjct: 21 GVHAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHNMFSAQKIADDLQEALSSDQV 80 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 + P + ++ + ++ ++ID + A R IVV+ S + Sbjct: 81 LLY--------PANELVAAESAVSSPETLAQRIDVLVRCA-RGF----RGIVVAPFSGVR 127 Query: 283 G-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + E S + L G ++ L+ +++ Y+R + RG V G I+ +P Sbjct: 128 RLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMGYERVERVERRGEMSVRGGIIDFYPM 187 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 +A+RV +F DI+ I F P + I V + I + L+ + Sbjct: 188 TTA-MAYRVELFDEDIDSIRTFDPTDQRSIDKVREVMITPCKEIIADAERLSRTADTV-- 244 Query: 402 ELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 +RL+E + E R+ + Q RL I ++EML I Y L P Sbjct: 245 ---VRLLEAQLE-RMSDRQAKLRLRDEIHREVEMLRERIYFPEIYKYISLLY------PE 294 Query: 459 PT-LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507 T L++Y+P+D++L +DE + + R + L + G LP Sbjct: 295 KTNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLPDL 344 Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 849 RVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924 >gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42] gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42] Length = 1177 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 51/331 (15%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF------ 213 ++ G+H K QLL G++GS ++ + + + +RP + N A ++ + Sbjct: 17 IVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTALLGD 76 Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 ++ F + E S PE R D I + ++ + +A R +L + Sbjct: 77 QSVFLYPVNELISSEIAVASPELRAQRLDV-INRLTNGEAPVVVAPVAAVRRMLPPKELW 135 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 SQ+++ L GD +E +L + LV+ Y+R D+ G F + G Sbjct: 136 ---------------KSSQLVISL--GDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+P E R+ +F +++ I F R++ET+K A + P L Sbjct: 179 GIIDIYPLTSEHPV-RIELFDTEVDSIRSF---NSDDQRSIETLKHVA----IGPAKEL- 229 Query: 394 TAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 I+ E K R +E +G + + + L I++D E L T + Q + Sbjct: 230 ----IIRAEEKARAMERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVK 285 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Y Y E P +L +Y P D+LL +DE Sbjct: 286 YLSYFY-----EKPASLLDYTPADTLLLLDE 311 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + D DK G Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus DPC 4571] gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus DPC 4571] Length = 1165 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 128/308 (41%), Gaps = 29/308 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ ++ P I++ N+ A LY E P +V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQIVTELKTPLILVEENENKAQNLYGELSAILPDGSVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I+ A LL + IVV++ + Y + Sbjct: 81 -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + ++Q + G E +L LV YK++ + G F + GD ++++P E+ Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ I EF T + ++ ++I A V + TA + I++++ Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQEEIDHVEISAAQDRVFSVEAIKTAAEAIEQDMG--- 246 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 + ++ T L+ L G + YL + P +L EY+ + Sbjct: 247 ------DAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKK-----PSSLLEYLDK 295 Query: 468 DSLLFVDE 475 + + +D+ Sbjct: 296 NGQILIDD 303 >gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN 1401G] gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN 1401G] Length = 1110 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759] gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759] Length = 1186 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/338 (21%), Positives = 138/338 (40%), Gaps = 33/338 (9%) Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 G+ + F M V + ++ +K A QLYS+ + +Y + Y Sbjct: 37 GTDRVFLMNAVSDESSVKLVLTYSDK-RAEQLYSDLR----------------FYSRDVY 79 Query: 238 V-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295 + P D I R R R L+ C +V++V ++ I ++ ++ I+ Sbjct: 80 MYPAKDILFFSADVHGNAITRKRMDVLRRLVSGEPCTIVATVDALFDKIPALSYMNKYII 139 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 + ++ +L L Y + D G F V G I+I+P E+ +R+ M+ + Sbjct: 140 NICTAQRLDVDDLRQKLSALGYDKVDNVEEPGQFAVRGGIIDIYPL-TEECPYRIDMWDD 198 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +++ I F + + I V++I IY V + +N ++ I+ ELK +L++ Sbjct: 199 EVDTIKTFDAESQRSIETVDSIVIYPAGEIVLSQDRINRGIRKIEAELKPYAQKLKESFH 258 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 R+++ + E L + +++Y Y +L + +P+DS + +DE Sbjct: 259 TEAYARIKREVAELKEQLTEFSAVYGVDSYVDYFYS-----DTVSLIDCLPDDSYVLIDE 313 Query: 476 ----SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509 S +G HR E G+ LP M+ Sbjct: 314 TRKVSDRAATDETGFRSSMVHR----LEGGYVLPGQMN 347 >gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII 143-D] gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII 143-D] Length = 1110 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 111/246 (45%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A+L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADAKLINFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ Y+R D+ G F + Sbjct: 115 IVISTPQSLQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYQRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPLNIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC 55195] gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC 55195] Length = 1110 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners LactinV 01V1-a] gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners LactinV 01V1-a] Length = 708 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 27/246 (10%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381 GD ++I+P ++ +R+ F ++I+ I F P++ + ++ + K+Y Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233 Query: 382 NSHYVT 387 N Y T Sbjct: 234 NEDYTT 239 >gi|330719342|ref|ZP_08313942.1| excinuclease ABC subunit B [Leuconostoc fallax KCTC 3537] Length = 65 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 40/53 (75%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 F + + Y P+GDQP AI+QL KG+ + K Q+LLG TG+GKTFT++ VI+ ++ Sbjct: 10 FDLVSKYKPTGDQPQAISQLTKGLKEKVKEQILLGATGTGKTFTISNVIQDIK 62 >gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1118] Length = 1164 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ P I++ N+ A LY E + +A YF Sbjct: 24 KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I + LL IVV++ + Y + S Sbjct: 81 -----PVDATIATQTAVSSPDELSSRIQSLNF-----LLSGKPGIVVTTPQGLQYKLSSP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ + E EL + LV YK++ + G F + GD ++I+P E+ Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ I EF + + + +E + + A V + + A + IK+++ Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDMV--- 246 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 A+ ++ L+ LE G + YL E P +L EY+P+ Sbjct: 247 ------DAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295 Query: 468 DSLLFVDE 475 + + +D+ Sbjct: 296 NGEILLDD 303 >gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200] gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200] Length = 1176 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/320 (20%), Positives = 148/320 (46%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L E + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAEGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1112] gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL 1112] Length = 1164 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ P I++ N+ A LY E + +A YF Sbjct: 24 KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I + LL IVV++ + Y + S Sbjct: 81 -----PVDATIATQTAVSSPDELSSRIQSLNF-----LLSGKPGIVVTTPQGLQYKLSSP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ + E EL + LV YK++ + G F + GD ++I+P E+ Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ I EF + + + +E + + A V + + A + IK+++ Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDMV--- 246 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 A+ ++ L+ LE G + YL E P +L EY+P+ Sbjct: 247 ------DAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295 Query: 468 DSLLFVDE 475 + + +D+ Sbjct: 296 NGEILLDD 303 >gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909] gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909] Length = 1176 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 34/325 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L+K + ++ LL GVT S + + E QRP +++ N A +LY + N Sbjct: 17 LMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNLYHAQRLYDQLSNLMDE 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERNDCIVVS 276 +V F D +I E SS +I+RM A S+LE IV++ Sbjct: 77 GSVRLF--------------PMDEFITAEMLASSSELRIERMNTLA--SILENEVKIVIT 120 Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + +S + Q + L+ G E +L LV+ Y G F V G Sbjct: 121 HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+IFP E+ R+ F ++++ I F T + I ++ I I V + Sbjct: 181 IDIFPM-TEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVF 239 Query: 396 MKYIKEELK--MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 IK L ++L+++E + +L E ++ D+E ++ + + + Y L Sbjct: 240 EAQIKSRLSKTLKLLDIETQDQLRE------KVFNDIENIKNHNNLEIMHKYISLLY--- 290 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHV 478 E P TL Y ++++D + + Sbjct: 291 --ENPDTLLSYFTNPLVIYIDYNRI 313 >gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC] gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC] Length = 1164 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ P I++ N+ A LY E + +A YF Sbjct: 24 KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I + LL IVV++ + Y + S Sbjct: 81 -----PVDATIATQTAVSSPDELSSRIQSLNF-----LLSGKPGIVVTTPQGLQYKLSSP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ + E EL + LV YK++ + G F + GD ++I+P E+ Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ I EF + + + +E + + A V + + A + IK+++ Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDMV--- 246 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 A+ ++ L+ LE G + YL E P +L EY+P+ Sbjct: 247 ------DAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295 Query: 468 DSLLFVDE 475 + + +D+ Sbjct: 296 NGEILLDD 303 >gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum WAL-14163] gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum WAL-14163] Length = 1179 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 21/304 (6%) Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS------YYDY--YQPEA 236 M + +E Q P +V A L SE P + + Y DY + P+ Sbjct: 18 MNRELERGQGPLLVSGCMDSQKAHLISELTKEIPWKLIVTYDDQRARELYEDYRCFSPDV 77 Query: 237 YV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294 Y+ P D + R R + L E + V+++V + + +E+ + Sbjct: 78 YLYPARDLLFYSSDIHGNLLTRQRMQVMKHLAEESGGAVITTVDGLMDHLLPLENLKRQC 137 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 +++ G++++ +L SL Y+R G F V G I+I+P ED+ +R+ ++G Sbjct: 138 LRVGSGEALDVDKLKVSLTGMGYERVAQVDGMGQFSVRGSIIDIYPL-TEDLPFRIELWG 196 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 ++++ I F P + + + ++ IY + V R + I++E + L ++ Sbjct: 197 DEVDSIRTFDPESQRSVEQLDEALIYPATELVLTREEAAAGILKIEKEKNKYVKSLREQM 256 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL--FEYIPEDSL-L 471 + EA R+E I+ E L+ + ++ RY P T+ Y PE L + Sbjct: 257 KTEEAHRIESVISELTEGLKEGWRVHGLGSFIRYFC-------PETVSFLRYFPEGRLTV 309 Query: 472 FVDE 475 F+DE Sbjct: 310 FMDE 313 Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ E I+ D G DVLV ++ GLDIP + I DAD+ G Sbjct: 866 VTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGL---- 921 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 922 SQLYQIRGRVGRS 934 >gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei] Length = 1045 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLL G++GS KT +A + + ++P +++ N A Q+ + N + + F Sbjct: 26 QLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLANQLNGDQIYTF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + + S E++ + AT IVV+SV+ + + +V Sbjct: 81 ---PVEEVMAAEIAVSSPESRAERVRTLSFLAT-----GKKGIVVTSVAGMRRLLPTVRQ 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q+++G V+ K L + L + Y R + G F + GD I+IFP E+ R Sbjct: 133 WRDSQTQIEMGGEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRGDIIDIFPLDTEN-PVR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +F +++ I F T + I N+E++ I Sbjct: 192 IELFDTEVDAIRSFEADTQRSIENLESVAI 221 Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V Y H ++ + +I D GK+DVLV ++ G+D+P + + DAD G Sbjct: 858 VGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGL---- 913 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 914 SQLYQLRGRIGRS 926 >gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM 16047] gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM 16047] Length = 1164 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 131/308 (42%), Gaps = 29/308 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ + + +++ ++ P I++ N+ A LY E +A +YF Sbjct: 24 KNSLITSANAGAFSLLLKQIVSELKAPLILLEENESKAQNLYGELNAILDDDAAQYF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I A LL I+V++ + Y + + Sbjct: 81 -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGRPGIIVTTPQGLQYKLSAP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++++ E EL + LV+ YK++ + G F + GD ++I+P E+ Sbjct: 131 QAFAEARRDFVPEKEYELSELNNWLVQSGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ I EF + + + ++ +++ A V R + A IK+++ Sbjct: 190 VRIEFFGDEIDTIKEFDLSSQRSQKEIDHVEVAAAQDRVFSREAILQAADKIKKDM---- 245 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 + + ++ T L+ LE G ++ YL E P +L EY+P+ Sbjct: 246 -----QDAPAPDKAVKDHFTVALDNLEDGGLPKNYAFLVDYLI-----ENPSSLLEYLPK 295 Query: 468 DSLLFVDE 475 + + +D+ Sbjct: 296 NGQILLDD 303 >gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1] gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1] Length = 1176 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 34/325 (10%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 L+K + ++ LL GVT S + + E QRP +++ N A +LY + N Sbjct: 17 LMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNLYHAQRLYDQLSNLMDE 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERNDCIVVS 276 +V F D +I E SS +I+RM A S+LE IV++ Sbjct: 77 GSVRLF--------------PMDEFITAEMLASSSELRIERMNTLA--SILENEVKIVIT 120 Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + +S + Q + L+ G E +L LV+ Y G F V G Sbjct: 121 HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+IFP E+ R+ F ++++ I F T + I ++ I I V + Sbjct: 181 IDIFPM-TEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVF 239 Query: 396 MKYIKEELK--MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 IK L ++L+++E + +L E ++ D+E ++ + + + Y L Sbjct: 240 EAQIKSRLSKTLKLLDIETQDQLRE------KVFNDIENIKNHNNLEIMHKYISLLY--- 290 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHV 478 E P TL Y ++++D + + Sbjct: 291 --ENPDTLLSYFTNPLVIYIDYNRI 313 >gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM 7] gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM 7] gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3] Length = 1177 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 51/331 (15%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G+H K QLL G++GS ++ + + + +RP + N A ++ + Sbjct: 17 IVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTALLGD 76 Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 +V E S PE R D I + ++ + +A R +L + Sbjct: 77 QSVFLYPVNELISSEIAVASPELRAQRLDV-INRLTNGEAPVVVAPVAAVRRMLPPKELW 135 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 SQ+++ L GD +E +L + LV+ Y+R D+ G F + G Sbjct: 136 ---------------KSSQIVISL--GDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+P E R+ +F +++ I F R++ET+K A + P L Sbjct: 179 GIIDIYPLTSEH-PVRIELFDTEVDSIRSF---NSDDQRSIETLKTVA----IGPAKEL- 229 Query: 394 TAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 I+ E K R ++ +G + + + L I++D E L T + Q + Sbjct: 230 ----IIRAEEKARAMDRLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVK 285 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Y Y E P +L +Y P D+LL +DE Sbjct: 286 YLSYFY-----EKPASLLDYTPSDTLLVLDE 311 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + D DK G Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens TA208] Length = 1177 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 51/331 (15%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF------ 213 ++ G+H K QLL G++GS ++ + + + +RP + N A ++ + Sbjct: 17 IVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTALLGD 76 Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 ++ F + E S PE R D I + ++ + +A R +L + Sbjct: 77 QSVFLYPVNELISSEIAVASPELRAQRLDV-INRLTNGEAPVVVAPVAAVRRMLPPKELW 135 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 SQ+++ L GD +E +L + LV+ Y+R D+ G F + G Sbjct: 136 ---------------KSSQIVISL--GDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+P E R+ +F +++ I F R++ET+K A + P L Sbjct: 179 GIIDIYPLTSEH-PVRIELFDTEVDSIRSF---NSDDQRSIETLKTVA----IGPAKEL- 229 Query: 394 TAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 I+ E K R ++ +G + + + L I++D E L T + Q + Sbjct: 230 ----IIRAEEKARAMDRLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVK 285 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Y Y E P +L +Y P D+LL +DE Sbjct: 286 YLSYFY-----EKPASLLDYTPSDTLLVLDE 311 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + D DK G Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC 700633] gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC 700633] Length = 1174 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 19/210 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+LG+TG+ K +A E + P +V+ P + A QLY E Sbjct: 27 QLVLGLTGAAKHLAVANAYENWKGPVVVVTPTMLQATQLYEEL---------------VQ 71 Query: 231 YYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVE 288 +Y+ E Y+ + + E SI+ ++ R + L IVV +S I + +E Sbjct: 72 WYEDEVYLFTVEESLAAEYSIHSPEVVSNRIRTLQFLTTGEKGIVVVPLSGIQKPLVPLE 131 Query: 289 SYSQMIVQLKIGDS-VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + + ++L +G++ +E ++L++ L + Y+R+ + G F V G ++I+P + E Sbjct: 132 VWKKSTIELVVGETQLEVEDLVTKLGRMGYRREAMVATPGDFSVRGGIVDIYPLNQEH-P 190 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 R+ F ++++ + F T + + VE I Sbjct: 191 IRLDFFDDELDSLRYFDAETQRSLEMVENI 220 >gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9515] gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9515] Length = 1175 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 53/322 (16%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L+K I +++ ++ G + K+ + + + + I+++PN+ +A + Y F + Sbjct: 16 ITELVKRIEKNKELNII-GSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFNSI 74 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 N + YY P +P KE+ + Q+ + E+N I+ + Sbjct: 75 GNRNIL--------YYPPSKNLPYGSINKSKETEYS-QLSVISKLINNDKEEKN-IIITT 124 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 S + + Q I+ L G ++E KEL S LV Y ++++ G++ G+ I Sbjct: 125 ERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRRGEII 184 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ---KIRNVETIKIYANSHYVTPRPTLN 393 +I+P + E + R+ F N I++I E+ P+T + I VE +++ NS Sbjct: 185 DIYPVNNE-LPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNS---------- 233 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 I+E+L++ L EG ++ E + T N RYL Sbjct: 234 ----LIREKLEL----LSDEG------------VFNSEEITTKN------NLDRYLGIIE 267 Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475 E P L YI EDS++ +DE Sbjct: 268 --EYPSNLINYINEDSIIVIDE 287 >gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens GS-15] gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens GS-15] Length = 1158 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 18/231 (7%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYD 230 L G+ GS + +A++++ +RP +V+AP+ AA++ +E + F P + + + Sbjct: 25 LTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELRFFSGRPFDVLSF------ 78 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P D ++ S + + R + R L++R VV++ + + Sbjct: 79 --------PAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDALRQRVLPRTM 130 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + G+ + E L+ LV Y + RGTF V G ++IFP E R Sbjct: 131 LDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPGFEQPV-R 189 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 + FG+ +E I F PL+ + + +E + + + V L +A +IK Sbjct: 190 IEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVLKSASHHIK 240 >gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica ACS-134-V-Col7a] gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica ACS-134-V-Col7a] Length = 1096 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 43/265 (16%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS- 211 Q ++ LK + K ++ G++GS K+F +++ I Q +I++ + +L+ Sbjct: 11 QNPSMTDGLKAFRQKGK-SVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHDKEHKELWER 69 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLER 269 +F F+P+ V F P T+ + S+ Q +MR S+L Sbjct: 70 DFSFFWPNVQVLPF-------------PITERVEFTTVARSLEGQGAQMR---ALSMLAW 113 Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKR 319 N +VV + ++E +Q +V L++ S+E+ ELL LVK Y+R Sbjct: 114 NRPVVV--------LATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYER 165 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RG F V GD +IFP + +D R+ FG++I+ + F T R++ET+ Sbjct: 166 VDQVEQRGHFSVRGDIFDIFPVNSDDPI-RMEFFGDEIDTMRHFSVDTQ---RSIETVDA 221 Query: 380 Y-ANSHYVTPRPTLNTAMKYIKEEL 403 Y ++T +T + Y K+ L Sbjct: 222 YTVTPFFLTSDDADSTLLSYAKDGL 246 Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 ++R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 DLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1175 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/318 (20%), Positives = 133/318 (41%), Gaps = 27/318 (8%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +L GI R + QL+ G+ GS +T ++ + + +++ N A+QL + + Sbjct: 16 ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V F P + + ++ + + R A +LL + ++V+SV+ Sbjct: 75 DQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPAVIVTSVA 121 Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + V + + + +G ++ ++L L Y ++ + G F V G ++I Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM-K 397 +P D R+ F +++ + F P T + + N++ I + ++ L TAM + Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPGTQRSVENLDEYTILPATDFI-----LTTAMLQ 235 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 + LK + K+ + E Q L + L +E + Y YL R Sbjct: 236 AGAQRLKTAIAAESKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK---- 291 Query: 458 PPTLFEYIPEDSLLFVDE 475 ++F+Y+ D L+ +E Sbjct: 292 -TSIFDYVAADGLVIFEE 308 >gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM 12885] gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM 12885] Length = 1219 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 267 LERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 + + C+VV+ V + + E ++ ++ L+ G +++ ELL+ LV Y+R + Sbjct: 119 IRQGPCLVVAPVGAVARRLPRPERWAAGLIDLEPGRVLDRDELLARLVAAGYQRAEQVDR 178 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 G V G ++++P E V R+ FG++I+ + F P + + + +++ Sbjct: 179 PGEVAVRGGIVDVYPPAGEPV--RIEFFGDEIDSLRRFDPGSQRSTETLARVRLVPAREL 236 Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445 V P ++ + E++ RL E ++ R A++L +R+ DL LE + ++ Sbjct: 237 VLDGPAWQQGLRALAGEIE-RLREQTRQRRGGAARQLLERLEQDLARLEAE---RPLDLA 292 Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSL 470 RYL P TL +Y P +L Sbjct: 293 ERYLPFFEPAM--ATLLDYAPGPAL 315 Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R H ++ E ++ D GK DVLV ++ GLD+P + + DAD+ G Sbjct: 875 RFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLIVEDADRFGL--- 931 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 932 -AQLYQLRGRVGRS 944 >gi|332665410|ref|YP_004448198.1| transcription-repair coupling factor [Haliscomenobacter hydrossis DSM 1100] gi|332334224|gb|AEE51325.1| transcription-repair coupling factor [Haliscomenobacter hydrossis DSM 1100] Length = 1141 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 28/243 (11%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPA--IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 LL + G+ +F +A V Q PA +++A NK AA ++ F V +F Sbjct: 53 LLELVGAQLSFVIAGVYH--QHPANHLIVADNKEEAAYWQNDLAALFGQKRVHFFPD--S 108 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 + QP + T + + + E I+ + ++A R IV + + S E Sbjct: 109 FKQPLRFDELNQTNVLERT---ETINAVSNAA------RGQVIVTYPEALFERVVSPEVL 159 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 S+ +++ +G+ ++ + L+ L++ ++ R++ G F + G I+IF S D+ +RV Sbjct: 160 SKSRIEIAVGEKLDPEFLMDVLIEYKFTREEFVFEPGQFSLRGGIIDIF-SFGNDLPYRV 218 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F +++E I F PLT +N+ + I P +NT K+E K+ L + Sbjct: 219 ELFDDEVESIRTFNPLTQLSAQNISRVSIV---------PNINTRF---KQEDKVSLFRV 266 Query: 411 EKE 413 KE Sbjct: 267 LKE 269 >gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1] gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1] Length = 1175 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/317 (19%), Positives = 129/317 (40%), Gaps = 25/317 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +L GI R + QL+ G+ GS +T ++ + + +++ N A+QL + + Sbjct: 16 ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V F P + + ++ + + R A +LL + +VV+SV+ Sbjct: 75 DQVFLF-------------PAEEMITTEVATSSPESRAQRVQALNALLRDSPAVVVTSVA 121 Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + V + + + +G ++ ++L L Y ++ + G F V G ++I Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P D R+ F +++ + F P T + + N++ I + ++ L Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAG--- 237 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 + LK + K+ + E Q L + L +E + Y YL R Sbjct: 238 -AQRLKTAIAAESKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK----- 291 Query: 459 PTLFEYIPEDSLLFVDE 475 ++F+Y+ D L+ +E Sbjct: 292 TSIFDYVAADGLVIFEE 308 >gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803] gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803] Length = 1176 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/320 (20%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + +R +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKRSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+I+ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESIRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPTSLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1] gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1] Length = 1175 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/317 (19%), Positives = 129/317 (40%), Gaps = 25/317 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +L GI R + QL+ G+ GS +T ++ + + +++ N A+QL + + Sbjct: 16 ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V F P + + ++ + + R A +LL + +VV+SV+ Sbjct: 75 DQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSVA 121 Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + V + + + +G ++ ++L L Y ++ + G F V G ++I Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P D R+ F +++ + F P T + + N++ I + ++ L Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAG--- 237 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 + LK + K+ + E Q L + L +E + Y YL R Sbjct: 238 -AQRLKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK----- 291 Query: 459 PTLFEYIPEDSLLFVDE 475 ++F+Y+ D L+ +E Sbjct: 292 TSIFDYVAADGLVIFEE 308 >gi|295396690|ref|ZP_06806836.1| transcription-repair coupling factor [Brevibacterium mcbrellneri ATCC 49030] gi|294970436|gb|EFG46365.1| transcription-repair coupling factor [Brevibacterium mcbrellneri ATCC 49030] Length = 1202 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 21/174 (12%) Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P + + A +L + +V +F S+ + E PR+DT ++ S + Sbjct: 50 PVVAVTSTGREAEELTEALADHLGPTSVVFFPSW-ETLPHERLSPRSDTVGKRLSVLRA- 107 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELL 309 + H R L +VV++V + G+G +E V LK+GD + EL Sbjct: 108 ---LSHPGERPL-----SVVVTTVRALLQPIVKGLGDLEP-----VTLKVGDEHDLTELA 154 Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 L Y R D+ RG F V G I+IFP ED A RV FG+++EEI F Sbjct: 155 EHLSHLAYSRVDMVSRRGEFAVRGGIIDIFPP-TEDSALRVEFFGDEVEEIRRF 207 >gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1175 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/317 (19%), Positives = 129/317 (40%), Gaps = 25/317 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +L GI R + QL+ G+ GS +T ++ + + +++ N A+QL + + Sbjct: 16 ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V F P + + ++ + + R A +LL + +VV+SV+ Sbjct: 75 DQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSVA 121 Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + V + + + +G ++ ++L L Y ++ + G F V G ++I Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P D R+ F +++ + F P T + + N++ I + ++ L Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAG--- 237 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 + LK + K+ + E Q L + L +E + Y YL R Sbjct: 238 -AQRLKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK----- 291 Query: 459 PTLFEYIPEDSLLFVDE 475 ++F+Y+ D L+ +E Sbjct: 292 TSIFDYVAADGLVIFEE 308 >gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16] gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16] Length = 1180 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/319 (21%), Positives = 142/319 (44%), Gaps = 30/319 (9%) Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 KGI + QLL G+TGS +T A + R +V+ N A ++Y + + Sbjct: 19 KGIENDMNEQLLTGLTGSARTVVSAALFRETGRSQLVVTHNLYQAQKIYEDLVELLDEDT 78 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVVSSVSC 280 V Y+ + I E ++ + ++ R +L++ IVV+ ++ Sbjct: 79 V--------------YLYPVNELISAEIAVASPEMKAQRLDLLNALVQDFKGIVVAPLAG 124 Query: 281 IYGIGSVESYSQMI-VQLKIGDSV-EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 I + ++ Q + LK G+ + + +E + + V Y+R D+ G F V G +++ Sbjct: 125 IRRLLPPKALWQSSQLHLKTGEDIGDLEEFIKNFVTMGYRRSDMVSAPGEFSVRGGIVDL 184 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 +P E R+ +F +++ + F T + ++ + I + + K Sbjct: 185 YPLTKEH-PLRIELFDTEVDSMRYFSLETQRSEGMIDEVTIGPAQEVLLHHSHYSHGAKL 243 Query: 399 IKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY-SRYLTGRNPGE 456 ++E+ + L ++ K+ R +L++ I +++ L+ + + + + Y S Y E Sbjct: 244 LEEKYEATLKKVASKQTR----DKLQEHIPFEIAQLKQSATFEGMYKYMSLYY------E 293 Query: 457 PPPTLFEYIPEDSLLFVDE 475 P +L Y+PED+ ++VDE Sbjct: 294 TPQSLLSYMPEDAFVWVDE 312 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +RM E ++ + + RV Y H ++ E II D G+ DVLV ++ G+DIP Sbjct: 847 ERMTEQISTLV--PDARVSYAHGQMNERELESIILDFLEGESDVLVTTTIIETGVDIPNV 904 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + +ADK G + L Q GR R+ Sbjct: 905 NTLIVCNADKMGL----SQLYQIRGRVGRS 930 >gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC 49176] gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC 49176] Length = 1184 Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 6/184 (3%) Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + IV+L + DS + EL L + Y++ +G F V GD +IFP E+ +R+ Sbjct: 136 EKIVKLSVRDSFDITELARRLSELGYEKTSQVSGKGQFAVRGDIFDIFP-LTEETPFRLE 194 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +G++I+ I F + + I NVE + +Y + + +K + +E + + Sbjct: 195 FWGDEIDTIRAFDVESQRSIENVEELLVYPATEIIIDEERKLAGLKKLNKEKEEVYKKFR 254 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E + EA R+ + + LE G I++Y Y + T F+Y E+ + Sbjct: 255 AEMKTEEAARINSVVEEFKDNLEIYGGSFGIDSYINYFF-----DETETFFDYFNEEDIF 309 Query: 472 FVDE 475 F+DE Sbjct: 310 FIDE 313 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 608 RVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 RV + H ++ + LERI I + G+ DVLV ++ GLDI + I DADK G Sbjct: 865 RVSFAHGQMNERELERIMI--EFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGL- 921 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 922 ---SQLYQLRGRVGRS 934 >gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu 4113] gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu 4113] Length = 1236 Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 22/238 (9%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ ++G + Q+ L + + F +A + + RP + + A L + ++ Sbjct: 67 ALAEAVRGAADGHRPQVDLVGPPAARPFAIAALARSAGRPVLAVTATGREAEDLAAALRS 126 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P + V + S+ + E PR+DT + + + R+ H +VV Sbjct: 127 LLPPDTVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRQDDPAAGPVSVVV 181 Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + V + G+G +E V L+ G + + +E++ L Y R ++ RG F Sbjct: 182 APVRSVLQPQVKGLGDLEP-----VSLRAGGTADLEEIVDGLAAAAYSRVELVEKRGEFA 236 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ R+ +G+DIEEI F K+ + ++++ + + P Sbjct: 237 VRGGILDVFPP-TEEHPLRIEFWGDDIEEIRYF------KVADQRSLEVAEHGLWAPP 287 >gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis Il1403] gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp. lactis Il1403] Length = 1161 Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQ + + +G RE+ LL G++G+ K+ MA E + I++ ++ A +LY Sbjct: 8 DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269 E V F S + Y A + DR+ R A LL+ Sbjct: 67 ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYRLEALNFLLDE 111 Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 +VV ++ + S E++ + + L GD + L++ L K Y++ + G Sbjct: 112 KSTGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F + GD ++I+P E+ R+ FG++++ I F + + + ++E ++IY S ++ Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230 Query: 388 PRPTLNTAMKYIKE 401 + K + E Sbjct: 231 TDKEFDKGAKSLTE 244 >gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM 44963] gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM 44963] Length = 1169 Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 73/327 (22%), Positives = 138/327 (42%), Gaps = 52/327 (15%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +LL+ I E V LL G+T + + + +A + A+++P +++ ++ A QL K F Sbjct: 18 RLLEQIRQPEGVPLLTGITEAARPYVIAALSVALKQPLLIVVQDENQATQLAETLKQFLT 77 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 + + + + D E + +T + + ++R ER +V S+ Sbjct: 78 NPSDVFCLPDRDAMPFERLIGDAETTQHRLQTFIALVER----------ERTPIVVCSAR 127 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI-------IRGTFRV 331 + + + + + QL+ G ++ L+S+++Q Y D+G G F Sbjct: 128 ALTQPVIPPQELATALFQLREGQEID----LTSMLEQLY---DLGYEPVAEVEQPGQFSH 180 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G I++FP L R+ FG++IE I F T + + P Sbjct: 181 RGGIIDLFPPTLPRPV-RIEFFGDEIESIRTFDQATQRSL-----------------NPI 222 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRL----EQRITYDLEMLETTGSCQSIENYSR 447 + + +E L +R + +E L+++ L E+R DL++L+ S I Y Sbjct: 223 QDCVVGPAREALPVRGPQAAQELATLDSKILHRDAEERWNNDLDVLKQRRSFDDIAFYLP 282 Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVD 474 YL P T+ +Y+P LL +D Sbjct: 283 YL------HQPATVLDYLPRTGLLILD 303 >gi|255027042|ref|ZP_05299028.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-003] Length = 499 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 141/320 (44%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDD---- 69 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 +S D + Y P + + S + ++ R A LL IV+ Sbjct: 70 --------LLSLMDVDRLFLY-PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ + L EL+++ + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 293 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 294 --PASLFDYLPKNTAILLDE 311 >gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18] gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29] gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3] gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3] gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29] gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18] Length = 1176 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 148/320 (46%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + ++V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGVIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ + LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQIEINLGQEIDLEALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTAVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|258544391|ref|ZP_05704625.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC 15826] gi|258520350|gb|EEV89209.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC 15826] Length = 296 Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TKR +E++ + L + R RY+H ++ ++R I+ DLR GK D+LV ++ G Sbjct: 108 IIFAATKRASEEIADSLRDNGFRARYLHGDLPQVKRNRIVEDLRKGKCDILVATDVAARG 167 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705 +D+P V D R + IGR+ R + + ++ QL+ T Sbjct: 168 IDVPAISHVINYD-----LPRQVEDYVHRIGRSGRAGRTGTAINLCSLADRSQLSA--IT 220 Query: 706 RRREKQLEHNKKHNINPQ 723 R E+++E ++ + P+ Sbjct: 221 RYLERKIEEHRIAGLEPK 238 >gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus EC20] gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus EC20] Length = 1172 Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 +A G+ + QLL G+ GS KT + V +A Q+ IV+ PN QL + +N Sbjct: 13 VAAWHTGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSATRSLLERNDCIVV 275 + YV D + E + + R R +A ++ + I V Sbjct: 73 ----------------TEDVYVFPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYV 116 Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V+ + + +++ Q +IGD ++ + L L+ Y+RQ + G F + G Sbjct: 117 LPVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGS 176 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++I+P + E R+ +F +I+ + F T + + ++ + I + V L + Sbjct: 177 ILDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAS 235 Query: 395 AMKYIKEELKMRL 407 K ++E L RL Sbjct: 236 GQKQLQELLNKRL 248 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++DVLV ++ G+DIP + + +AD G Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 913 ---STLYQLRGRVGRS 925 >gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes 10403S] Length = 1179 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 140/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + V + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNVSIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ + L EL+++ + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN 2503V10-D] gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN 2503V10-D] Length = 1110 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 17/212 (8%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 GD ++I+P ++ +R+ F ++I+ I F Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTF 205 >gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453] gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453] Length = 1175 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 78/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 G+++ + QL+ G++GS + MA + + QRP +V+ N A ++ + + + V Sbjct: 21 GVNAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHNMFSAQKIADDLQEALSSDQV 80 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 + P + ++ + ++ ++ID + A R IVV+ S + Sbjct: 81 LLY--------PANELVAAESAVSSPETLAQRIDVLVRCA-RGF----RGIVVAPFSGVR 127 Query: 283 G-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + E S + L G ++ L+ +V+ Y+R + RG V G I+ +P Sbjct: 128 RLLPAPEVMSDARIVLHDGGTLVLDSFLNRMVEMGYERVERVESRGEMSVRGGIIDFYP- 186 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 +A+R+ +F DI+ I F P+ + I V + I + L+ + Sbjct: 187 MTTTMAYRIELFDEDIDSIRTFDPIDQRSIDKVREVVITPCKEIIADSERLSRTADTV-- 244 Query: 402 ELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 +RL+E + E R+ + Q RL I ++EML + Y L P Sbjct: 245 ---VRLLEAQLE-RMSDRQAKLRLRDEIHREVEMLRERIYFPELYKYISLLY------PE 294 Query: 459 PT-LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505 T L++Y+P+D++L +DE + + R + L + G LP Sbjct: 295 KTNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLP 342 Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ E + I D G++DVLV +++ G+DIP + + DADK G Sbjct: 849 RVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905 Query: 668 KTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924 >gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041] gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041] Length = 1185 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/309 (20%), Positives = 135/309 (43%), Gaps = 27/309 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T +A ++E Q+P + + + +L + N P + V Y Sbjct: 33 QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADDLANLLPPDRV------YQ 86 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289 + E T SS N ++ R++ A +L + +VV+SV+ + + + E Sbjct: 87 FPVEEVLAAEVAT-----SSPNYRLQRVQ--ALDALDSQRPAVVVTSVAGLRRNVFAPEF 139 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++Q +++ +G ++ + L Y+ Q + + G F + G I+++ + D R Sbjct: 140 FAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALN-TDNPVR 198 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ + F T + + N E ++I + + P + +K++ E Sbjct: 199 IDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPPAEFSRVQAAVKQQFDQLKAE 258 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT---LFEYIP 466 L+ +G Q++ R T L L+ + + + PT L +Y+ Sbjct: 259 LQ-DGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLVY--------PTRHSLLDYLA 309 Query: 467 EDSLLFVDE 475 D L++D+ Sbjct: 310 ADGALYLDD 318 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y+H ++ E ++ D G +DVLV +++ G+DIP + + +AD G Sbjct: 864 DARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLGL- 922 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 923 ---AQLYQIRGRIGRS 935 >gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC 12755] gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC 12755] Length = 1172 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 19/253 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 +A G+ + QLL G+ GS KT + V +A Q+ IV+ PN QL + +N Sbjct: 13 VAAWHAGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSATRSLLERNDCIVV 275 + YV D + E + + R R +A ++ + I V Sbjct: 73 ----------------TDDVYVFPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYV 116 Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V+ + + +++ Q +IGD ++ + L L+ Y+RQ + G F + G Sbjct: 117 LPVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGS 176 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++I+P + E R+ +F +I+ + F T + + ++ + I + V L Sbjct: 177 ILDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAA 235 Query: 395 AMKYIKEELKMRL 407 K ++E L RL Sbjct: 236 GQKQLQELLNKRL 248 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++DVLV ++ G+DIP + + +AD G Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 913 ---STLYQLRGRVGRS 925 >gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp. sakei 23K] gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei subsp. sakei 23K] Length = 1173 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLL G++GS KT +A + + ++P +++ N A Q+ + N + + F Sbjct: 26 QLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLANQLNGDQIYTF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P V + + S E++ + AT IVV+SV+ + + + Sbjct: 81 ---PVEEVMAAEIAVSSPESRAERVRTLSFLAT-----GKKGIVVTSVAGMRRLLPTARQ 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q+++G V+ K L + L + Y R + G F + GD I+IFP E+ R Sbjct: 133 WRDSQTQIEMGSEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRGDIIDIFPLDTENPV-R 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + +F +++ I F T + I N+E++ I Sbjct: 192 IELFDTEVDAIRSFEADTQRSIENLESVAI 221 Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V Y H ++ + +I D GK+DVLV ++ G+D+P + + DAD G Sbjct: 858 VGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGL---- 913 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 914 SQLYQLRGRIGRS 926 >gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM 13335] gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1] gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM 13335] Length = 1110 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 17/212 (8%) Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 AA A L+ I + + K +L GV + +++ +Q+P +++A ++ A Q+YS Sbjct: 8 AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 F N V +F P + T + +++++D M LL + Sbjct: 68 LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV+S+ + Y + + + + LK+ ++ LV+ YKR D+ G F + Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 GD ++I+P ++ +R+ F ++I+ I F Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTF 205 >gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus EC30] gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus EC10] gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus EC30] gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus EC10] Length = 1172 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 19/253 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 +A G+ + QLL G+ GS KT + V +A Q+ IV+ PN QL + +N Sbjct: 13 VAAWHTGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSATRSLLERNDCIVV 275 + YV D + E + + R R +A ++ + I V Sbjct: 73 ----------------TEDVYVFPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYV 116 Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V+ + + +++ Q +IGD ++ + L L+ Y+RQ + G F + G Sbjct: 117 LPVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGS 176 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++I+P + E R+ +F +I+ + F T + + ++ + I + V L Sbjct: 177 ILDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAA 235 Query: 395 AMKYIKEELKMRL 407 K ++E L RL Sbjct: 236 GQKQLQELLNKRL 248 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++DVLV ++ G+DIP + + +AD G Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 913 ---STLYQLRGRVGRS 925 >gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis CV56] Length = 1161 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQ + + +G RE+ LL G++G+ K+ MA E + I++ ++ A +LY Sbjct: 8 DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269 E V F S + Y A + DR+ R A LL+ Sbjct: 67 ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYRLEALNFLLDE 111 Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 +V+ ++ + S E++ + + L GD + L++ L K Y++ + G Sbjct: 112 KSTGFLVIPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F + GD ++I+P E+ R+ FG++++ I F + + + ++E ++IY S ++ Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230 Query: 388 PRPTLNTAMKYIKE 401 + K + E Sbjct: 231 TDKEFDKGAKSLTE 244 >gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp. lactis KF147] gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp. lactis KF147] Length = 1161 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQ + + +G RE+ LL G++G+ K+ MA E + I++ ++ A +LY Sbjct: 8 DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH--SATRSLLER 269 E V F S + Y A + DR+ + A LL+ Sbjct: 67 ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYLLEALNFLLDE 111 Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 +VV ++ + S E++ + + L GD + L++ L K Y++ + G Sbjct: 112 KSTGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F + GD ++I+P E+ R+ FG++++ I F + + + ++E ++IY S ++ Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230 Query: 388 PRPTLNTAMKYIKE 401 + K + E Sbjct: 231 TDKEFDKGAKSLTE 244 >gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 4222] gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 4222] Length = 1176 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551] gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551] Length = 1176 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 143/323 (44%), Gaps = 27/323 (8%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A ++ L +G+ K QL+ G++GS ++ MA + E + P +V+ N A ++Y + Sbjct: 16 AVVSSLEEGL----KEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNLYQAQKVYEDLL 71 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 + P V + P D + + ++ R + +V Sbjct: 72 HLLPEKDVFLY-------------PVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVV 118 Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V+ ++ I + ++ + Q + ++G ++ L LV+ Y+R + G F V G Sbjct: 119 VTPLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+P E++ R+ +F +I+ I F + ++ I I + + R + Sbjct: 179 GIIDIYPL-TEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNRNEVA 237 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 ++ ++ +L L +++ L+A L + I ++E L Q +EN +YL+ Sbjct: 238 QGIEELEAQLASTLQQVKNAA--LKA-TLTENIKGEIEQLR---QGQLLENMFKYLSFFY 291 Query: 454 PGEPPPTLFEYIPEDSLLFVDES 476 E P +L +Y+PE L+ DE+ Sbjct: 292 --ESPASLLDYLPEGGLVIFDET 312 Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E +I G++DV+V ++ G+DIP + + +ADK G Sbjct: 860 RVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADKMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842] gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842] Length = 1176 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273] gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273] Length = 1176 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKLG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|213426934|ref|ZP_03359684.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 62 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%) Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573 R EE+ + VSATPG +E EQ + +I EQIIRPTGL+DP VE+R Q++D+ Sbjct: 1 RREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVEVRPTMGQIDDLLG 59 Query: 574 EIN 576 EIN Sbjct: 60 EIN 62 >gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e] gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-561] gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578] gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923] gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e] gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578] gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923] Length = 1179 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/320 (21%), Positives = 140/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ + L EL+++ + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str. 1/2a F6854] gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes Finland 1988] gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161] gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818] gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str. 1/2a F6854] gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818] Length = 1179 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/320 (21%), Positives = 140/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ + L EL+++ + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC 533] gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC 533] Length = 1165 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 EK LL GV + ++++ Q+P I++ N+ A L E N P + V F Sbjct: 23 EKRSLLTGVNSGAFAAVLMQMLKVWQQPLILVEDNEEKAQTLLDELGNLLPDDMVFSF-- 80 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P T T I +++++ + A + R +VV+ + Y + Sbjct: 81 ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ K + +L L + Y+R+ I G F GD ++I+P E+ Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDIVDIYPLDQEN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++++ + EF T + + ++I I V A++ IK+++ + Sbjct: 190 IRIEFFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEKIKQDMSESI 249 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 E E ++ +++LE G + YL R+ L +Y+ + Sbjct: 250 AEEES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295 Query: 468 DSLLFVDE 475 D LL D+ Sbjct: 296 DGLLLFDD 303 Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ Y+H + + +I+ +FD+LV ++ G+D+P + + DAD G L Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909 Query: 668 KTSLIQTIGRAAR 680 L IGR+AR Sbjct: 910 LYQLRGRIGRSAR 922 >gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1186 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 24 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 83 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 84 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 130 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 131 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 190 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L + Sbjct: 191 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 249 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 250 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 301 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 302 KEPASLIDYLPEDGVVILDE 321 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 868 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 926 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 927 ---SQLYQLRGRVGRS 939 >gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM 20075] gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM 20075] Length = 1165 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 15/236 (6%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ ++ I++ N+ A LY E P +V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQIVTELKTTLILVEENENKAQNLYGELSAILPDGSVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I+ A LL + IVV++ + Y + Sbjct: 81 -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + ++Q + G E +L LV YK++ + G F + GD ++++P E+ Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 R+ FG++I+ I EF T + + ++ ++I A V + TA + I++++ Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM 245 >gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876] gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876] Length = 1176 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 148/320 (46%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ + LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501] gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501] Length = 1173 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + IGD ++ + L L Y R+++ G F + G I+I+P Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E Q R+T + T + YS L + T+ +Y P + Sbjct: 252 ATTEEADREFLQDYFGRLTSSWQAGVPTEEAKF---YSDLLY-----QESVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ Y H ++ + + + G++DVLV ++ G+DIP + + +AD G Sbjct: 858 RIGYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENADYMGL--- 914 Query: 668 KTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 915 -STLYQLRGRVGRS 927 >gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM 11109] gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM 11109] Length = 1168 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 5/226 (2%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 D + QLL + R+ L G++ + + T+ ++ + RP +++ P+ Y Sbjct: 3 DNTVRLYQLLMAVEPRQTPLELYGLSPAAASLTLVRLWRELHRPILLVTPSTGQQVSFYG 62 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + K F + + VS P P + E + + + R +A +L R + Sbjct: 63 DLKFFL--SGCQEVVSSDASTSPLYIFPEHENLPFVELTPDCKTASHRLAAAYALSARIN 120 Query: 272 CIVVSS--VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 ++++ + + + + S +I L +G+ +++ L+ L Y R+ + RG + Sbjct: 121 MPIITATPAALLQPLPPRDKLSTIIEYLVVGEEIDRDRFLAHLQAGGYTRRPLVEERGDY 180 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 V G I+ FP L R +G+ I+ + F P T + +R+ E Sbjct: 181 SVRGGVIDFFPP-LSSYPVRAEFWGDTIDSLRHFNPATQRSLRHFE 225 >gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1176 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 148/320 (46%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ + LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662] gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA] gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662] gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA] Length = 1175 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/307 (21%), Positives = 126/307 (41%), Gaps = 23/307 (7%) Query: 220 NAVEYFVSYYDYYQPEA-YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 N + +V Y ++ +A Y P D I + R S+++ + V SV Sbjct: 61 NKAKEWVENYRFFGEDAVYFPAKDPLFYSADVHGNAIAKERLRGIESIIKGQGGVFVLSV 120 Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + + + V + + V ++++ Y+R G F V G ++ Sbjct: 121 DALMDRVVPLAEIKKNRVMISLETEVSEQDITKKFTAMGYERTPFVEAAGEFAVRGGIVD 180 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 I+P D +R+ ++G +++ I F + + I V+++ +Y + V ++ +K Sbjct: 181 IYP-FTSDCPYRIELWGEEVDSIRSFDAQSQRSIEEVKSLTVYPATEIVLSEERISQGLK 239 Query: 398 YIKEELK------MRLIELEKEGRLL-EAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 I+ E + + E +KE RL E QR+ + ++ +L ML +E Y Y Sbjct: 240 KIEAEYQDLKETFHKAFETDKEVRLTKEYQRIREELS-ELSML------IGVEGYLPYFY 292 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510 R +Y P+D+ ++VDE + G + + E G+ LP MD Sbjct: 293 DR-----LVCFLDYFPKDTAVYVDEPQHVEERGRGFFLEFTESMKSRLEAGYLLPGQMDT 347 Query: 511 RPLRFEE 517 FEE Sbjct: 348 VAC-FEE 353 Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N +V + H +++ E I+ + DVLV ++ GLDIP + I DA++ G L Sbjct: 863 NAKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIETGLDIPNVNTMIIHDANQLG-L 921 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695 L +GR+ RN + ++ DT+ K Sbjct: 922 SQLYQLRGRVGRSNRNAFAFLMYKRDTLLK 951 >gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC 5463] Length = 1055 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 15/236 (6%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + +++ ++ I++ N+ A LY E P +V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQIVTELKTTLILVEENENKAQNLYGELSAILPDGSVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I+ A LL + IVV++ + Y + Sbjct: 81 -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + ++Q + G E +L LV YK++ + G F + GD ++++P E+ Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 R+ FG++I+ I EF T + + ++ ++I A V + TA + I++++ Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM 245 >gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC 6026] Length = 1165 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 EK LL GV + ++++ Q+P I++ N+ A L E N P + V F Sbjct: 23 EKRSLLTGVNSGAFAAVLMQMLKVWQQPLILVEDNEEKAQTLLDELGNLLPDDMVFSF-- 80 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P T T I +++++ + A + R +VV+ + Y + Sbjct: 81 ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ K + +L L + Y+R+ I G F GD ++I+P E+ Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILDIYPLDQEN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++++ + EF T + + ++I I V A++ IK+++ + Sbjct: 190 IRIEFFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEKIKQDMSESI 249 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 E E ++ +++LE G + YL R+ L +Y+ + Sbjct: 250 AEEES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295 Query: 468 DSLLFVDE 475 D LL D+ Sbjct: 296 DGLLLFDD 303 Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ Y+H + + +I+ +FD+LV ++ G+D+P + + DAD G L Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909 Query: 668 KTSLIQTIGRAAR 680 L IGR+AR Sbjct: 910 LYQLRGRIGRSAR 922 >gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM 14469] gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM 14469] Length = 1179 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/325 (22%), Positives = 143/325 (44%), Gaps = 37/325 (11%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 QL G+ + + G + K+ M V E ++ I+ +++ A ++Y ++ FF Sbjct: 16 QLCSGLKKNRGILQVSGCIEAQKSHLMYSVGEPYKKKLII-TYSELRAKEIYENYR-FFD 73 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 + Y P D + QI + R + ++LLE V++++ Sbjct: 74 SKVLLY--------------PARDLMFYSADIRSHQIGQQRMAVLQALLEEEQVTVITTL 119 Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 C+ + + +++ + ++L L++ Y++ G F V G ++ Sbjct: 120 PGCMEHVLPLSCIRDHVLEFAQDSELNPEKLSGQLIEMGYEKTVQVDAPGQFAVRGGIVD 179 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP E+ R+ ++G++I+ I F + + I N+ET++IY V A + Sbjct: 180 IFPL-TEENPVRIELWGDEIDSIRSFDAESQRSIENLETVRIYPAGEAVISDVQAAKAAE 238 Query: 398 YIKEELKMR------LIELEKEGRLLE-AQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 IK+E K + ++ E+ R+ E AQ + +R+ LE+ E TG +E ++ YL Sbjct: 239 RIKKESKKQEKIFRDAMKTEEAHRVRETAQEVCERL---LELKERTG----LEAFTPYLY 291 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475 E + +Y D+L+ +DE Sbjct: 292 -----EETVSFLDYFGTDALIMLDE 311 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 19/115 (16%) Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 QV VY+ +N + +T ++A+ L E V + H ++K E I+ Sbjct: 836 QVYYVYNRVNTIVE---------MTNKIAKLLPE------ANVAFAHGQMKERELERIMY 880 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 D G DVLV ++ GLDI + I DAD G + L Q GR R+ Sbjct: 881 DFINGDIDVLVSTTIIETGLDISNVNTMIIHDADTMGL----SQLYQLRGRVGRS 931 >gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1166 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/289 (19%), Positives = 128/289 (44%), Gaps = 20/289 (6%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 IA++ + I L+ G+T S K +I+ + + + + + A +Y + +F Sbjct: 12 IAEIDEAIEKERMPLLIYGLTDSQKAHIAHYIIKKLNKKVLFITYADVEARAIYEDLISF 71 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 +A +P D K + + + R A + +++ V+ Sbjct: 72 LNGDAY--------------LIPSRDALFYKVDASSLDLIGKRLIAVKKIIDDKPSAFVA 117 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 S+ + + S + + + + KIGD ++ +EL SSL+ Y+R + +G F + G Sbjct: 118 SIDGVLNKVASKDIFLRYSRKYKIGDIIDLEELSSSLITMGYERVPMVEGKGQFSIRGGI 177 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+ F S +ED +R+ +F + I+ I F T + + N+ ++++ ++ + Sbjct: 178 IDFF-SPMEDEGFRIELFDDVIDSIRSFDVFTQRSLNNLSEVELFPAREFILEDENIKKG 236 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 M+ + + + ++ KE A++++++ E++E +S+ N Sbjct: 237 MENLSSNVNSYVSKI-KETHSGRAEKIKKKFD---EIMENISETKSVPN 281 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +RMA + E + + V + + LE I I G +D+LV ++ GLDIP Sbjct: 846 ERMASIIKELVPSARVAVAHGQMDEGKLENIMI--GFLNGDYDILVCTTIIETGLDIPNV 903 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + D+DK G + L Q GR R+ Sbjct: 904 NTIIVYDSDKMGL----SQLYQLRGRVGRS 929 >gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134] gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W] gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134] gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W] gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1176 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E ++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ + LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus ATCC 53653] gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus ATCC 53653] Length = 1177 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 16/210 (7%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ ++G + + L + + F +A + + RP + + A L + ++ Sbjct: 15 ALAEAVRGAADGNRPHVDLVGPPAARPFAVAALARSAGRPVLAVTATGREAEDLAAALRS 74 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P + V + S+ + E PR+DT + + + R+ H + +VV Sbjct: 75 LLPPDGVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPSPDDPAAGPVSVVV 129 Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + V + G+G +E V L+ G S + E++ L Y R ++ RG F Sbjct: 130 APVRSVLQPQVKGLGELEP-----VSLRAGRSADLPEVVDGLAAAAYSRVELVEKRGEFA 184 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 V G +++FP E+ RV +G+D+EEI Sbjct: 185 VRGGILDVFPP-TEEHPLRVEFWGDDVEEI 213 >gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris MG1363] gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis subsp. cremoris MG1363] gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 1180 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQ + + +G RE+ LL G++G+ K+ MA E + I++ ++ A +LY Sbjct: 8 DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269 E V F S + Y A + DR+ R A LL+ Sbjct: 67 ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRIAYRLEALNFLLDE 111 Query: 270 --NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 +VV ++ + + E++ + + L GD + L++ L K Y++ + G Sbjct: 112 RATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F + GD ++I+P E+ R+ FG++++ I F + + + ++E ++IY S ++ Sbjct: 172 EFSMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230 Query: 388 PRPTLNTAMKYIKE 401 + K + E Sbjct: 231 TDNEFDKGAKSLTE 244 >gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4] gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4] Length = 1173 Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 17/227 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T ++ ++ ++P I++ N A QL +F ++ P + + F Sbjct: 27 QLITGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQLMEDFADWVPEDRLHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 D I E S+ R AT L E+ ++V + E Sbjct: 82 ---------PVDEMIYAEMSVASPEARAERVATLDFLLSEKFGVVIVPLAGVRKVMPPKE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + +K G +E L LV Y RQ + G F + G ++I+ S E+ Sbjct: 133 IWKAAQFTIKQGGELELTHLSQRLVDMGYTRQQLVNSPGEFSIRGGIVDIY-SLTEEFPI 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 R+ +F +++ + F T + I+ +E + I + V + L A Sbjct: 192 RIDLFDTEVDSLRYFDAATQRSIQTIEKVTILPATDTVYTKEQLTAA 238 >gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris SK11] gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp. cremoris SK11] Length = 1162 Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 21/254 (8%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 DQ + + +G RE+ LL G++G+ K+ MA E + I++ ++ A +LY Sbjct: 8 DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVAEKYIIVTDSQFHANELYD 66 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269 E V F S + Y A + DR+ R A LL+ Sbjct: 67 ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYRLEALNFLLDE 111 Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 +VV ++ + S E++ + + L GD + L++ L Y++ + G Sbjct: 112 KSTGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSNAGYEKTQRVMTPG 171 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F + GD ++I+P E+ R+ FG++++ I F + + + ++E ++IY S ++ Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230 Query: 388 PRPTLNTAMKYIKE 401 + K + E Sbjct: 231 TDNEFDKGAKSLTE 244 >gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626] gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626] Length = 1150 Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 37/303 (12%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 L V + +A + RP +++ + A + + ++ V + DY Sbjct: 31 LAVAQGARPLVLASIWAQCPRPTMLVVAGEEAADRTARALAAWLGNDVVSRYPDRRDY-- 88 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292 P +D ++ ++ MR +A L CIVV+S + + + V S Sbjct: 89 -----PWSD------ATPDDACIGMRCNAVARLAAGEKCIVVASAHALLRRVPPVGSGYF 137 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + +GD V +E+ + LV Y + G+F V GD++++FP+ A R+ Sbjct: 138 VPSTFSVGDEVLFEEVPALLVGMGYVDTGEVDVPGSFHVHGDTVDVFPAQ-STCAVRLEF 196 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG++I+ I TGQ I +E++ + T+ A Sbjct: 197 FGDEIDRIRRMVAATGQTIGELESVTVVPCRELAFTTETIRNA----------------- 239 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 E L + + DLE+++ S ++E Y L G+ + E+I ++L+ Sbjct: 240 ERALYNRAQENSAVAADLELIQRGASAPALERYLPILYGKT-----ASPLEHISPETLVV 294 Query: 473 VDE 475 + E Sbjct: 295 LAE 297 >gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271] gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271] Length = 1183 Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ S + +A++ +A RP +++ P QL + P +V+ Sbjct: 25 QLVTGIDDSARAVMLAQLFQARPRPLLIVEPIASKLGQLVDDLTQLLPQVSVQ------- 77 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 A+V IE + +Q+ R R L CIVV++V+ + + Sbjct: 78 -----AFVVEEALAIEFAFASEDQM-RDRIQILNQLAHGEPCIVVTNVAGLRKQLTHPNQ 131 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + Q L++GD+ E+++L S L Y R + G F V G I+ FP E R Sbjct: 132 WRQAQHTLELGDNWERRQLESVLTAWGYHRASLVEQPGEFSVRGSIIDFFPVSAE-YPIR 190 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F +++ I F T I N+++++I Sbjct: 191 LDFFDTELDSIRAFNAETQSSIENLDSVQI 220 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ +E ++ D G +DVLV ++ G+DIP + + DAD G Sbjct: 859 RVAYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIPNVNTLFVEDADHMGL--- 915 Query: 668 KTSLIQTIGRAARN 681 ++L Q GR R Sbjct: 916 -STLYQLRGRVGRT 928 >gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676] gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15] gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171] gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15] gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676] gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171] Length = 1176 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis F0359] gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis F0359] Length = 1092 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 27/260 (10%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K+ + G+ GS K+ A V+ + A+++ P ++ + F P + V Sbjct: 25 KIYGVYGLGGSAKSAYAAHVLAKTDKNAVIVVPTTEQVNGWLTDLQYFSP----QLRVYT 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 Y Q + T + +E + E + +R S R +V ++ + + + Sbjct: 81 YPLVQHTVFTTTTKS-LELAAKQMEALTALRGS-------RQAVVVATAEEAAQFVTAPQ 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ K+G+ E++ +LS LV Y+R D+ RG F V GD I+I+P + E Sbjct: 133 KIDDAVLSFKVGEDYERETILSGLVSGGYERSDLVDRRGLFSVRGDIIDIYPLN-EKEPI 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG+ +E I F T + ++++I L A+ Y K++ K L+ Sbjct: 192 RLEFFGDTLENIRYFNEQTQKSSIKTDSVRI------------LPFALAYDKDDEKTTLL 239 Query: 409 ELEKEGRLL--EAQRLEQRI 426 + G ++ E R+++ + Sbjct: 240 DYGNNGIIIWDEGNRIKEEL 259 >gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550] gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550] Length = 1176 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579] gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4] gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579] gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4] Length = 1176 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1183 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 21 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 80 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 81 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 127 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 128 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 187 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 188 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 246 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 247 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 298 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 299 KEPASLIDYLPEDGVVILDE 318 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G++DVLV ++ G+DIP + + DAD+ G Sbjct: 865 DARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 923 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 924 ---SQLYQLRGRVGRS 936 >gi|218513868|ref|ZP_03510708.1| transcription-repair coupling factor [Rhizobium etli 8C-3] Length = 411 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + IGD ++ + L L Y R+++ G F + G I+I+P Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTTTYPV- 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLYQES-----VTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264] gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264] Length = 1176 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24] gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24] Length = 1183 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 21 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 80 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 81 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLATGENGIIVA 127 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 128 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 187 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 188 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 246 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 247 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 298 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 299 KEPASLIDYLPEDGVVILDE 318 Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 865 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 923 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 924 ---SQLYQLRGRVGRS 936 >gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM 17132] gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM 17132] Length = 1113 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 95/191 (49%), Gaps = 17/191 (8%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA--VEYFVSYYDYY 232 G+TGS K+ + A + E +++ +V+ ++ A Y++ +N + + A + YF + + + Sbjct: 33 GLTGSLKSISTAALYENLKKFILVILEDREEALYFYNDLQNLYGYEAEEIAYFPASFKHE 92 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 E IE + I R S+T+ LL IV + + + S +S Sbjct: 93 SGE---------IENANIIQRSALLTRFSSTQPLL-----IVTYPEALVEKVVSKKSLVA 138 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 +++K+GD+++ + L Q+++ D G F V G +++F S+ +V +R+ + Sbjct: 139 NTLKVKVGDTLDLNFVTELLDSYQFEKTDFVYEPGQFAVRGGILDVF-SYSAEVPYRIEL 197 Query: 353 FGNDIEEISEF 363 FG+++E I F Sbjct: 198 FGDEVESIRAF 208 >gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4] gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus OF4] Length = 1180 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 26/310 (8%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K QLL G+TGS +T MA + + ++ +V+ N A ++Y + + V + Sbjct: 26 KEQLLSGLTGSSRTLLMAALYKETKKTQVVITHNLFQAQKVYEDLIDLVGEEDVHLY--- 82 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 P + + + + ++ R L+ + I++ ++ I + Sbjct: 83 ----------PVNELISSEIAIASPEMKSQRLDVLNKLVAGFEGIIIVPLAGIRRLLP-P 131 Query: 289 SYSQMIVQLKIG---DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 +Y QL I D E +++ LV ++R D+ G F V G I+I+P E Sbjct: 132 TYLWKDSQLNISVGRDIGEIHNVITKLVMMGFERVDMVSSPGEFSVRGGIIDIYPL-TES 190 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 RV +F +I+ I F T + + ++ I I + A ++E+L Sbjct: 191 NPIRVELFDTEIDSIRTFLIETQRSEKELKEITIGPAEEVILQDQHYQHAANRLQEQLSA 250 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 L +++ + ++L Q I+Y++ L+ S Q + Y + E TL Y+ Sbjct: 251 TLKKVKAKQT---KEKLSQNISYEIGQLKQRSSFQGMYKYMSFYY-----EVKSTLLSYL 302 Query: 466 PEDSLLFVDE 475 P+D+L+ +DE Sbjct: 303 PDDALIIIDE 312 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +RM E ++ + + +V + H ++ E I+ D G DVLV ++ G+DIP Sbjct: 848 ERMTEQIS--MLVPDAKVSFAHGQMNERELESIMLDFLEGNSDVLVTTTIIETGVDIPNV 905 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I DADK G + L Q GR R+ Sbjct: 906 NTLIINDADKMGL----SQLYQIRGRVGRS 931 >gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus 1_2_62CV] gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus 1_2_62CV] Length = 1164 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 13/230 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLL+G++ S K+ TMA +E + +++ A +L S+ + V F++ D Sbjct: 26 QLLMGLSSSTKSITMASCVEENHK-ILILTSTYSEAERLSSDLIDLVGEERVYTFLA--D 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 +V + EK S E +D + S L IV + S ++ V ++ Sbjct: 83 DTPLAEFVFSSQ---EKIFSRLEALDFLLDSKQSGFL-----IVNVAASQLFLSNPV-NF 133 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + + LKIG E K+L+S L+ YK+ + +G F + GD ++IF + +RV Sbjct: 134 NSAYINLKIGQEYELKDLISQLLNSGYKQVSQVLKQGEFSIRGDILDIFERS-SQMPFRV 192 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 FG++++ I F P I+NVE + ++ + + + +A K I+ Sbjct: 193 EFFGDEVDGIRLFNPENQISIQNVEHVCVHPATDIIFTKADYKSAQKKIE 242 >gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str. A1055] Length = 1176 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 145/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++F MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM 5427] gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM 5427] Length = 1179 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 101/190 (53%), Gaps = 13/190 (6%) Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEIFPSHLED 345 ESY++++ + G+ + L LV+ Y+R +G + G F + G I+I+ + +++ Sbjct: 142 ESYTKIV---QAGECINISRLERELVQMGYER--VGRVEGMGQFAIRGGIIDIY-TPIDE 195 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 +R+ ++ ++++ I F T + I+ VE ++I N + L A+ IKE+LK Sbjct: 196 EPYRIELWDDEVDSIRNFNVQTQRSIQKVEALRIVPNQEIIFHLDLLKEAIPAIKEDLKK 255 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 L + G+ A ++E+++ ++ ++ S + +E Y Y + + ++ +Y+ Sbjct: 256 TTKALRQAGKKESALKIEEQVGEAIDQIQNDISPRGLEMYIPYTSLK-----LVSILDYL 310 Query: 466 PEDSLLFVDE 475 P+++LL +DE Sbjct: 311 PKETLLIIDE 320 >gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407] gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407] gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 1183 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 21 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 80 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 81 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 127 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 128 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 187 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++++P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 188 LDVYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 246 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 247 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 298 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 299 KEPASLIDYLPEDGVVILDE 318 Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 865 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 923 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 924 ---SQLYQLRGRVGRS 936 >gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM 2588] gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM 2588] Length = 1126 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 25/234 (10%) Query: 157 IAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 + QL+KGIH S + L G+TGS TF A E + + N + E Sbjct: 16 LQQLVKGIHLSDPQYFQLTGLTGSATTFVAAGAWE------MANSVNHLFILNDREEAAY 69 Query: 216 FFPHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 F HN +E D +Y P+++ +K NE T +L++ + V Sbjct: 70 F--HNDLESITQGLDIFYFPDSF--------KKAGFFNEINSSHSMLRTEALMKFSGNAV 119 Query: 275 VSSVSCIY------GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 V Y + + +Y+ +VQLK+GD ++ +LL+ LV ++ D G Sbjct: 120 HKKVLVTYPEALWEKVAASVAYTGNMVQLKVGDVLKVDDLLNKLVSWGFEFTDFVYEPGQ 179 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 + + G ++I+ S + +R+ +FG DI+ I F P + R + + + AN Sbjct: 180 YALRGGILDIY-SFGNEKPYRIELFGEDIDSIRLFDPESQLSERKLNQVTLIAN 232 >gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-071] gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL J2-071] Length = 1179 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319] gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319] Length = 1176 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/323 (21%), Positives = 143/323 (44%), Gaps = 27/323 (8%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A ++ L +G+ K QL+ G++GS ++ MA + E + P +V+ N A ++Y + Sbjct: 16 AVVSSLEEGL----KEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNLYQAQKVYEDLL 71 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 + P V + P D + + ++ R + +V Sbjct: 72 HLLPEKDVFLY-------------PVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVV 118 Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V+ ++ I + ++ + Q + ++G ++ L LV+ Y+R + G F V G Sbjct: 119 VTPLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRG 178 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+I+P E++ R+ +F +I+ I F + ++ I I + + + + Sbjct: 179 GIIDIYPL-TEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNQNEVA 237 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 ++ ++ +L L +++ L+A L + I ++E L Q +EN +YL+ Sbjct: 238 QGIEELEAQLASTLQQVKNAA--LKA-TLTENIKGEIEQLR---QGQLLENMFKYLSFFY 291 Query: 454 PGEPPPTLFEYIPEDSLLFVDES 476 E P +L +Y+PE L+ DE+ Sbjct: 292 --ESPASLLDYLPEGGLVIFDET 312 Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E +I G++DV+V ++ G+DIP + + +ADK G Sbjct: 858 DARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis serovar chinensis CT-43] Length = 1176 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++++P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDVYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne] gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Bacillus anthracis str. A2012] gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str. A0488] gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str. A0442] gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str. A0193] gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str. A0465] gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str. A0389] gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str. A0174] gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis Tsiankovskii-I] gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC 684] gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str. A0248] gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str. CNEVA-9066] gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str. Western North America USA6153] gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str. Kruger B] gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str. Vollum] gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str. Australia 94] gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne] gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str. A0488] gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str. A0193] gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str. A0442] gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str. A0389] gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str. A0465] gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str. A0174] gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis Tsiankovskii-I] gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC 684] gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str. A0248] Length = 1176 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 145/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++F MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL N3-165] gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL N3-165] Length = 1179 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048] gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048] Length = 1176 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLATGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PE+ ++ +DE Sbjct: 292 KEPASLIDYLPENGVVILDE 311 Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23] gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23] gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99] Length = 1179 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM 12333] gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM 12333] Length = 1205 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 67/328 (20%), Positives = 143/328 (43%), Gaps = 47/328 (14%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEF 213 AA+A+L++ + +R + + + + +A+++ A RP +V+ A +L + Sbjct: 14 AAVARLVEELPARGSLDAI--ASAGVRPALLAQLLGADHPRPLVVVTATGREADELAAAL 71 Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273 + + P + V ++ + E PR+DT + + + R+ H AT + + + Sbjct: 72 RCYVPDDDVAVLPAW-ETLPHERLSPRSDTVARRLAVLR----RLAHPATGADAQPHTGP 126 Query: 274 VVSSV--------SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 + + V + G+G +E V +++G++V+ ++L + L Y R D+ Sbjct: 127 IRALVLPVRAMLQPVVTGLGDLEP-----VSVQVGETVDLEDLAARLTAAAYTRTDMVER 181 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 RG F V G +++FP ED R+ +G+++EEI F + + +++I + Sbjct: 182 RGDFAVRGGILDVFPP-TEDHPLRLDFWGDEVEEIRWF------AVADQRSLEIAPGGLW 234 Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445 P L + E++ R +EL + + ++MLE ++E Sbjct: 235 APPCREL-----LLTPEVRARALELRAQ------------LPGAVDMLEKMSEGIAVEGM 277 Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 G + E +P+D+LL + Sbjct: 278 ESLAPALVDGM--EQVLELVPDDALLVL 303 >gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039] gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039] Length = 1173 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + IGD ++ + L L Y R+++ G F + G I+I+P Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB] gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB] Length = 1202 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 19/191 (9%) Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 GS F +A + E + RP +V++P + A + + + F V + P Sbjct: 37 GSANAFLIAALSEQLGRPLVVLSPTEKEARETFQDLSLFLGSGKVLLY--------PPWD 88 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 + TD + ++ ++ +R LL ++V+S+ + + V S + L Sbjct: 89 IQTTDMF-----ALQRDVELVRMEVLARLLTDEPAVIVASLKAL--MQKVVPRSILDAYL 141 Query: 298 KI---GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 +I G V + EL++ LV Y+R + +G F + G ++IFP LED R+ G Sbjct: 142 EILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEFSLRGHVLDIFPP-LEDSPLRLEFDG 200 Query: 355 NDIEEISEFYP 365 +D+E + F P Sbjct: 201 DDLESLRAFDP 211 >gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO] gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933] gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502] gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410] gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408] gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO] gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68] gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6] gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF] gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162] gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071] gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636] gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317] gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04] gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C] gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A] gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B] gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01] gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO] gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933] gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502] gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410] gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408] gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68] gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6] gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF] gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071] gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636] gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317] gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162] gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01] gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B] gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A] gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C] gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04] Length = 1173 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + IGD ++ + L L Y R+++ G F + G I+I+P Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus carnosus subsp. carnosus TM300] gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus carnosus subsp. carnosus TM300] Length = 1172 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 25/305 (8%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G++G+ K MA+ + RP +V+ N A +L ++ + + + + Y Y Sbjct: 28 LVTGLSGAVKATMMAEKYLSSDRPLVVVTNNLYQADKLEADIQQYINDDEI------YKY 81 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-VESY 290 P D E+ S+ + Q+ R L E + ++ + + + V+ + Sbjct: 82 -------PLQDIMTEEFSTQSPQLMSERVRTLTGLAEGQRGFFIIPLNGLKKLQTPVDIW 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++L +GD ++ + L+ LV Y+R+ G F + G I+I+P L R+ Sbjct: 135 QSHQLKLSVGDDIDVDDFLNKLVDMGYRRETAVSHIGEFSLRGGIIDIYP--LIGAPVRI 192 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F +++ I +F + + N ET++I + S Y+ L +KE + ++ Sbjct: 193 ELFDTEVDSIRQFDIESQRSEENQETVEITSASDYIITDDVLKRIKTQLKEAYENTRPKI 252 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 +K R E + +D ++ Q I ++ E P TL +YI +++ Sbjct: 253 DKSVRNDVKDTYESFLQFDSNFVD----HQVIRRLVTFMY-----EQPATLVDYISNNAI 303 Query: 471 LFVDE 475 + VDE Sbjct: 304 IAVDE 308 >gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX] gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX] Length = 1210 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP + + + AA L S + P ++V F ++ + E PR+DT ++ + + Sbjct: 78 RPVLALTATEREAADLNSALGSLLPADSVALFPAW-ETLPHERLSPRSDTVGQRLAVLR- 135 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKEL 308 R+ H L +VV+ + + G+G ++ V+++ GDSV EL Sbjct: 136 ---RLTHPDPDDPLTAPLRVVVAPIRSVLQPLVSGLGDLQP-----VRVREGDSVALDEL 187 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 + SLV Y R D+ RG V G +++FP E+ R+ +G+ +EEI F Sbjct: 188 VQSLVDIGYSRVDLVEKRGDIAVRGGILDVFPP-TEEHPLRLEFWGDTVEEIRYF 241 >gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082] gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082] Length = 1173 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + IGD ++ + L L Y R+++ G F + G I+I+P Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM 13280] Length = 1192 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 15/207 (7%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 L ++ SG+T +A RP + + + A + ++ + VE+ + Sbjct: 31 LAISQSGRTLAVAAQFARTPRPTVYIVSGEEAADRAA---RSLAAYVGVEHVARF----- 82 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292 P Y K + ++ + R +A + + CI+V+S S + + +ES Sbjct: 83 -----PERKDYPWKSNEPDDAVVAARCAAMSRVAQGESCIMVASARSLLRCVPPLESRYW 137 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 +G+ + +++ + LV Y R D G FRV GD++EI+ + R+ Sbjct: 138 QSTVFSVGEEIPFEQVPARLVGMGYTRADAADAPGLFRVQGDTVEIWAAQ-STAPVRIEF 196 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKI 379 FG++I+ I TGQ I + E+++I Sbjct: 197 FGDEIDRIRLMVASTGQTIGDEESVEI 223 >gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378] Length = 899 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 ID---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSVWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 + +++++ + L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VTRLEKKMTLTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 293 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 294 --PASLFDYLPKNTAILLDE 311 >gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679] gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679] Length = 1173 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + IGD ++ + L L Y R+++ G F + G I+I+P Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848 str. F0332] gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848 str. F0332] Length = 1194 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 30/222 (13%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA--PNKILA 206 P G P +A L+ G H G GS + A+ P +V+A P A Sbjct: 32 PRGLVPPVLA-LMGGAHGPGDAHAPEGPHGSNAARSHAE-------PPLVVAVTPTGREA 83 Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266 +L + + P VE F ++ + E PR+DT + I Q R+ H + Sbjct: 84 DELVGALRAYLPEETVELFPAW-ETLPHERLSPRSDTVARR---ILAQ-RRLAHPEDFAP 138 Query: 267 LERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 L ++V V + G+G ++ V++++GD V+ + L +LV Y R D Sbjct: 139 LR----VLVMPVRALLQPIAEGLGELKP-----VRVRMGDVVDLESLERALVDAAYSRVD 189 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 + RG F V G I+IFP + R+ +FG+D+EEI F Sbjct: 190 MVEGRGQFAVRGGLIDIFPP-TDPRPSRIELFGDDVEEIRVF 230 >gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816] Length = 1179 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 293 -DPASLFDYFPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-175] Length = 1179 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 293 -DPASLFDYFPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens MLS10] gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens MLS10] Length = 1186 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/325 (21%), Positives = 142/325 (43%), Gaps = 33/325 (10%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + +++KGI Q L+G++GS + +A + + +++ N A +LY + Sbjct: 14 LEKVIKGIEDGAGDQSLVGISGSARAMHLAALFRRTGKSQLIVTHNLFQAQKLYDDLITV 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + V + P + ++ + ++++ M +T + IV++ Sbjct: 74 LNTDDVLLY--------PANELISSEIAVASPEMRGQRLEVMNEWSTGA-----KRIVIA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + S + + + + +G+ V+ L V Y R D+ G F V G Sbjct: 121 PVAGVRRLLSPPDLWQEQRLTFTVGEDVDFDRTLGQFVNMGYSRADMVSAPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT---L 392 I+++P E+ R+ +F +++ I F +VET + V P + Sbjct: 181 IDVYPL-TEEYPVRIELFDTEVDSIRLF---------DVETQRSVDERSTVVAGPAREII 230 Query: 393 NTAMKYIK--EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450 ++YI+ E L +L + K RL + Q E I E +E+ + Q + +Y+T Sbjct: 231 VQDVQYIRAAERLDEQLAKSLK--RLKDDQIKETMINNVGEEIESLKNRQFFDAIYKYMT 288 Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475 E P TLF+Y+P+D+L+ +DE Sbjct: 289 LLY--ERPATLFDYMPDDTLVVLDE 311 >gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes] Length = 1190 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 25 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 84 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 85 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 131 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 132 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 191 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 192 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 250 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 251 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 304 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 305 --PASLFDYFPKNTAILLDE 322 Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 870 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 928 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 929 ---SQLYQLRGRVGR 940 >gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. F2365] gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes Clip81459] gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-194] gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-503] gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262] gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL N1-017] gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. F2365] gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL R2-503] gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262] gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-194] gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL N1-017] gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str. Scott A] Length = 1179 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 293 -DPASLFDYFPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b H7858] gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b H7858] Length = 1179 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K +++++ L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 293 -DPASLFDYFPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196] gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621] gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621] gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196] Length = 1176 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F ++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE ++++LEML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHELEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PE+ ++ +DE Sbjct: 292 KEPASLIDYLPENGVVILDE 311 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|297521247|ref|ZP_06939633.1| excinuclease ABC subunit B [Escherichia coli OP50] Length = 116 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 12/111 (10%) Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN-------- 745 T S+ AI ET RRREKQ ++N++H I PQ + +K+++++ L ++ A T Sbjct: 1 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAKGRGKSR 58 Query: 746 --ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 + D + +S K + + L M A NL FEEAA+IRD++ +L+ Sbjct: 59 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 109 >gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem] gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem] Length = 1157 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 18/235 (7%) Query: 157 IAQLLKGIHSR---EKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 + + LK I + EK +L L GV GS + +++++ P +V+ ++ A +L E Sbjct: 5 VPEYLKSIKEKLAPEKSRLSLAGVDGSAPAYLLSRLMTESGPPLVVITSDQESADELARE 64 Query: 213 FKNF-FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + F HNAV F + D EA P D E+ +++ R+ R+ Sbjct: 65 LRFFSCSHNAVLPFPGW-DVTPFEAASPHPDLVGERLNALL----RLMDGGARA------ 113 Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV + + + E+ + L G+ +E++ L+ LVK Y I RG+F V Sbjct: 114 -VVVPLAAALQRVIPRETLGGVCQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSV 172 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G ++IFP E R+ FG+ +E + F P T + + ++ + + + + Sbjct: 173 RGGILDIFPPDQER-PVRIEFFGDLVETMRLFDPATQRSLEPLDELVLLPSREVI 226 >gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330] gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12] gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1] gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330] gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12] gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1] Length = 1173 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 65/309 (21%), Positives = 129/309 (41%), Gaps = 29/309 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + +GD ++ + L L Y R+++ G F + G ++I+P + Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPGEPPPTLFEYIP 466 +E Q ++T ++ T + + Y ++ T+ +Y P Sbjct: 252 ATTEEADREFLQDYFGQMTSSWQVGIPTEEAKFYSDLLYQEFV----------TILDYFP 301 Query: 467 EDSLLFVDE 475 +SLL VD+ Sbjct: 302 SNSLLVVDD 310 >gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2] gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2] Length = 1173 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 131/331 (39%), Gaps = 42/331 (12%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q AA Q L SR QLL G+ GS KT A + R IV+ PN Q+ + Sbjct: 12 QVAAWHQQLTDHASR---QLLTGLAGSAKTLAFAGAYQKFDRQVIVVTPNLYYTNQVAED 68 Query: 213 FKNF------FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266 +N FP + E + + PEA R T + ++ + I M +A R Sbjct: 69 LRNIIDDVYVFPVD--EVLSAEMAFASPEARAERV-TALNAVATGKKGIYVMPIAALRKY 125 Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 L D + S +GD + +L LV Y+RQ + Sbjct: 126 LPAKDTWLNYQFSW-----------------HVGDEINLDQLPQQLVLMGYERQSMIGKP 168 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G F + G ++I+P E R+ +F +I+ + F T + + + + I + V Sbjct: 169 GEFSIRGSILDIYPLKAE-YPVRIELFDVEIDSMRSFDVETQRSVETLSEVTIVPTTELV 227 Query: 387 TPRPTLNTAMKYIKEELKMRLIELEK--EGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 L K ++E LK RL +++ + LE Y ++ S EN Sbjct: 228 FSPADLAHGQKVLQELLKKRLAVVKETTDKNFLE--------DYFGQLASAWQSGIPDEN 279 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 +RY + P ++ +Y +D+LL +D+ Sbjct: 280 -ARYYADL-LYQQPTSILDYFSKDALLMIDD 308 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++DVLV ++ G+DIP + + +AD G Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 913 ---STLYQLRGRVGRS 925 >gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans AK-01] gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans AK-01] Length = 1179 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 105/473 (22%), Positives = 189/473 (39%), Gaps = 53/473 (11%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P+ + A AQ L + LG+ S + + +A++ +R +V+AP K A Sbjct: 4 PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE---------KESSINEQIDRMR 259 L ++ F D QPE+ +P +E K S + + R Sbjct: 64 LCADLDFFL-----------QDLKQPESALPGQGWILEFPAYHILPFKGISYHTETAANR 112 Query: 260 HSATRSLLERND-CIVVSS----VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 SA + D IVV++ S + ++ S+ ++I+ G+ +++ + LV Sbjct: 113 ISALSRMANSPDPAIVVTTPQAMASRLIPKSALNSFGELIMA---GEELDRDAFVEKLVS 169 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 Y + I G F V G ++++ P + + + R+ FG++++ I F P T + I+ Sbjct: 170 GGYVKNLIVEEPGDFCVRGSIVDVYGPPYSQPL--RIEFFGDEVDSIRFFSPSTQRTIKK 227 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 +E I + V + L + + ++E+ + + + K I ++ L Sbjct: 228 MEEAVILPATEAVVSKDRLQSVIHRVREKAVLADMPVTK-------------IREVVDSL 274 Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493 + T IE + L N G+ +LF+Y+P D+L V + V Q Y D Sbjct: 275 KATQQFPGIEGFVPLLY-ENGGD---SLFDYLPADTLCTVLDP-VAASQEYEKYLEDVEE 329 Query: 494 KATLAEYGFRL--PSCMDNRPLR--FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549 A+ RL P M + P + N RP T A G E E + + + Sbjct: 330 NFETAQAENRLSIPPAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVE 389 Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 T LV + ++ + D +N QG I++ +K AE L L Sbjct: 390 TNTELVQNLKASKERDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLL 442 >gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252] gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252] Length = 1112 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 26/253 (10%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYD 230 L G+ GS F + ++ ++RP + + P++ AA L+S+ + + + + Sbjct: 34 LRGLAGSLPAFVLYELSRHLRRPVLCLTPDEEQAAYLFSDLEQLLGVSDRLLRFPATGQK 93 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 Y PE +P + IE R R L E D ++++S I + + Sbjct: 94 PYDPEQ-IPDSAPLIE------------RTDVLRRLAEGFDGLLLASAEAIAERVPPPDR 140 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP---SHLEDV 346 Q + L G ++ +LL+ L+ + ++R + G + G ++++P +H Sbjct: 141 VRQETLVLSPGMVIDPAQLLAHLIARGFERVEFVEAPGEVALRGGILDVYPFTGTH---- 196 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 RV FG++I+ I EF P T + I + + +I N +T +++ + + Sbjct: 197 PIRVEFFGDEIDTIREFDPRTQRSISRLTSAQIVPNLSAADSEEAAHTLFEHLPDHALLV 256 Query: 407 LIELEKEGRLLEA 419 L E EG L +A Sbjct: 257 LFE---EGALFDA 266 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ H ++K E ++ D K+DVLV N++ GLDIP + I A++ G Sbjct: 790 DVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIIINHAEQFGL- 848 Query: 666 RSKTSLIQTIGRAARNVNSKVILY 689 L Q GR R+ + K Y Sbjct: 849 ---ADLHQLRGRVGRS-DRKAFCY 868 >gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1107 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 6/192 (3%) Query: 229 YDYYQPEAY-VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGS 286 Y +Y + Y P D + + R R ++LLE + VV+S+ C+ + S Sbjct: 71 YRFYDRKVYSYPAKDLLFFQADIHGNLLIRQRMKVIKALLEEKELTVVTSIDGCMDFLES 130 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +E + ++ + +V+ ++L + LV Y+R + G F V G ++I+ E+ Sbjct: 131 LEKIKEQLIHYESDSTVDIEQLKNQLVALGYERVGQVEMPGQFSVRGGIVDIY-CLTEEN 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 WR+ ++G++I+ I F P + + + N+E + IY ++ + + + + Y EE Sbjct: 190 PWRIELWGDEIDSIRSFDPESQRSLENLEELTIYPAVEHIGDKDMV-SFLDYFPEE--RT 246 Query: 407 LIELEKEGRLLE 418 +I L++ RL E Sbjct: 247 IIFLDEPNRLTE 258 >gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980] gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980] Length = 1173 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + +GD ++ + L L Y R+++ G F + G ++I+P + Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQMTSSWQAGIPTEEAKFYSDLLY-----QEFVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|166714792|gb|ABY88108.1| UvrB [Stenotrophomonas sp. ICB207] Length = 61 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I+IFP+ +D+ RV +F ++E +S F PLTGQ I + IY +HYVTPR Sbjct: 2 IDIFPAESDDIGLRVELFDEEVERLSLFDPLTGQVISVIPRFTIYPKTHYVTPR 55 >gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163] gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163] Length = 1189 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 13/221 (5%) Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 D R A R+LL + + IVV +S + E + Q ++ KI +S Q++L L++ Sbjct: 107 DLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIE 166 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y +Q + G F V G+ ++I+P + D R+ F +++E + F + + + + Sbjct: 167 MGYNKQTLVANPGEFSVRGEIVDIYPINF-DEPIRLDFFDDELESMRTFDADSQKSLNKI 225 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + + S ++ PR + +K +L+ ++ + + E ++L + LE + Sbjct: 226 KQASVSPVSDFLLPRAEFSDGLK----QLEQAFVDYRNKLKGAEKKKLTEFFNPLLEAAK 281 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + +S + ++FEY+ + L+ +D+ Sbjct: 282 HFSYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDD 315 >gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens QYMF] gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens QYMF] Length = 1174 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 12/218 (5%) Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 Y + + K+G+S++ +++ + VKQ Y+R + G F + G I+I+ S E +R Sbjct: 136 YKKDQISFKVGESIDLEKVTETFVKQGYERVEQVEGNGQFSIRGGIIDIY-SGGEISPYR 194 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F ++++ I +F T + + V+ + IY + + + + ++ I+ E Sbjct: 195 IELFDDEVDSIRQFQVDTQRSTQKVQELLIYPVAETIIEPSAVESVIQAIEAEGAA---- 250 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 L K+ + +RL +++ G +E Y+ YL E +L +Y+ ++ Sbjct: 251 LSKKLKGGPKERLAEKVAEVSNKFREFGHFNGVEQYAPYLY-----EQEASLLDYLNPNA 305 Query: 470 LLFVDESHVTIPQISGMYRGDFHRK-ATLAEYGFRLPS 506 L+ +DE ++ G Y G+F TL E G LP+ Sbjct: 306 LVIIDEPQRCKERVRG-YEGEFKENFKTLLERGEVLPT 342 Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 21/114 (18%) Query: 585 ILLTVLTKRMAED-LTEYLYER----------------NIRVRYMHSEVKTLERIEIIRD 627 +++ +TK MA T Y+Y R RV H ++ E ++ D Sbjct: 822 MIIDAITKEMARGGQTYYVYNRVDGIHQVARKLQELIPEARVAVGHGQMGERELEMLMMD 881 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 G +DVLV ++ GLDI + I DADK G + L Q GR R+ Sbjct: 882 YLDGVYDVLVCTTIIETGLDISNVNTIMIHDADKLGL----SQLYQLRGRVGRS 931 >gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733] gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733] Length = 1173 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + +GD ++ + L L Y R+++ G F + G ++I+P + Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQMTSSWQAGIPTEEAKFYSDLLY-----QEFVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15] gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15] Length = 1173 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 25/307 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS KT A+ + + I++ PN A QL + ++ P + + F Sbjct: 27 QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288 D + E + + R AT +L E+ I + V+ ++ + + + Sbjct: 82 ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ Q + +GD ++ + L L Y R+++ G F + G ++I+P + Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 RV +F +I+ + F T + I E I + S V L ++ +++ L+ RL Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +E + + L+ + + + YS L + T+ +Y P + Sbjct: 252 ATTEEA---DREFLQDYFGQMTSSWQAGIPTEEAKFYSDLLY-----QEFVTILDYFPSN 303 Query: 469 SLLFVDE 475 SLL VD+ Sbjct: 304 SLLVVDD 310 >gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC 14580] gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580] gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC 14580] gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580] Length = 1177 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 67/326 (20%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G++ K QLL G++GS ++ A + + +RP ++ N A ++ + Sbjct: 17 IVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNLYQAQKITDDLTGLIKD 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 QP P + + + + ++ R L IVV+ + Sbjct: 77 -------------QPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVAPAA 123 Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + VE + + ++ G ++ ++LL LV+ Y+R D+ G F + G I++ Sbjct: 124 AVRRMLPPVEVWQNSQIHIETGRDIDTEQLLQKLVQMGYERTDMVAAPGEFSIRGGIIDV 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 + S E+ R+ +F +++ I +I N + + VT P Sbjct: 184 Y-SLTEENPVRIELFDTEVDSI---------RIFNTDDQRSLETRDEVTIGPAKELI--- 230 Query: 399 IKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449 +++E + R +E +G + + L+Q I D E L+ Q + Y Y Sbjct: 231 VRDEDRQRALEQIDQGLANSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYF 290 Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y P+++LL +DE Sbjct: 291 Y-----EKPASLLDYFPKNTLLILDE 311 Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3] gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3] Length = 1178 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 15/221 (6%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K QL+ G++GS +T +A ++E Q+P + + + +L + N N V Sbjct: 24 KRQLVTGISGSARTMLLAGMVEQSQQPVLAVVDSLTQLEELADDLSNLLGANQV------ 77 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 Y + E T SS N ++ R++ A +L + IVV+SV+ + + + Sbjct: 78 YQFPVEEVLAAEVAT-----SSPNYRLQRVQ--ALNALNSQRPVIVVASVAGLRRNVVAP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 ++Q +++ +G ++ + L Y+ Q + + G F + G I+++ + D Sbjct: 131 AFFAQATLKVTVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALN-TDNP 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 R+ +F +++ + F T + + NVE ++I + + P Sbjct: 190 VRIDLFDTEVDSLRYFDASTQKSVGNVEEVEILPATDLILP 230 >gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2] Length = 1187 Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 267 LERNDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 + R D +V S+ S + + ES + +GD +++ + LV Y R Sbjct: 110 MARGDAAIMVASARSLLRCVPEPESRYWEEKRFAVGDQFPFEQVPTLLVGMGYARAGAAD 169 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + GTFRV GD+++IFP+ R+ FG++I+ I LTGQ I V+ + I+ Sbjct: 170 VAGTFRVHGDAVDIFPAQ-SGSPVRIEFFGDEIDRIRLMVALTGQTIGEVQEVSIF 224 >gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185] gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185] Length = 1176 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ M + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLISGMATSSRSLLMTALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q V++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E ++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ + LE +++++EML+ + QSIE +YL+ Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM 20603] gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM 20603] Length = 1216 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 15/173 (8%) Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +V+ A +L + + P +AV ++ + E PR+DT + + Sbjct: 61 PIVVVTATGREADELAQALRCYVPTDAVATLPAW-ETLPHERLSPRSDTVARRLAVFR-- 117 Query: 255 IDRMRHSATRSLLERNDCIVVSSVS----CIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310 R+ H + + D + V + + G+G + V+L++GDSV+ ++ Sbjct: 118 --RLAHPSAEGVTGDIDVLTVPVRALLQPVVQGLGDLTP-----VRLQVGDSVDLTDVAH 170 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 L Y R D+ RG F V G +++FP H E RV FG+++++I+ F Sbjct: 171 QLADAAYARVDMVERRGEFAVRGGILDVFPPH-EAHPLRVDFFGDEVDDITYF 222 >gi|142843|gb|AAA22389.1| unknown [Bacillus subtilis] Length = 57 Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 37/50 (74%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 F++ + Y P GDQP AI +L+KGI +K Q LLG TG+GKTFT++ +I+ Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIK 54 >gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603] gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603] Length = 1176 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PE+ ++ +DE Sbjct: 292 KEPASLIDYLPENGVVILDE 311 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii JV-V16] gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii JV-V16] Length = 1162 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 15/212 (7%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +++ N+ A +L P V+YF V T +S +E Sbjct: 52 LIIEENENKAQRLVDNLAPLLPEEKVQYFA-----------VDSTLATQRATASPDELAQ 100 Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R++ A LL + IVV++ + Y + S +SY++ +K+G + K++ S LV Sbjct: 101 RIK--ALHLLLSEENGIVVTTAQGLEYQLNSKDSYTKSNKLIKVGQEYDLKQMNSWLVAS 158 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+++ + G F V GD ++I+P + + R+ FG++++ + F T + I + Sbjct: 159 GYRKEALVAKPGEFAVRGDILDIYPLD-QALPVRIEFFGDEVDTVKSFDVNTQKSISEKD 217 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 I + S + L A IK+E+K L Sbjct: 218 QINVLPASDRIFESANLKKAHNLIKDEIKESL 249 >gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii 27-2-CHN] gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii 115-3-CHN] gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii 27-2-CHN] gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii 115-3-CHN] gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] Length = 1162 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 15/212 (7%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +++ N+ A +L P V+YF V T +S +E Sbjct: 52 LIIEENENKAQRLVDNLAPLLPEEKVQYFA-----------VDSTLATQRATASPDELAQ 100 Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R++ A LL + IVV++ + Y + S +SY++ +K+G + K++ S LV Sbjct: 101 RIK--ALHLLLSEENGIVVTTAQGLEYQLNSKDSYTKSNKLIKVGQEYDLKQMNSWLVAS 158 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+++ + G F V GD ++I+P + + R+ FG++++ + F T + I + Sbjct: 159 GYRKEALVAKPGEFAVRGDILDIYPLD-QALPVRIEFFGDEVDTVKSFDVNTQKSISEKD 217 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 I + S + L A IK+E+K L Sbjct: 218 QINVLPASDRIFESANLKKAHNLIKDEIKESL 249 >gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2] gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2] Length = 1177 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/326 (20%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 ++ G++ K QLL G++GS ++ A + + +RP ++ N A ++ + Sbjct: 17 IVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNLYQAQKITDDLTGLIKD 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 QP P + + + + ++ R L IVV+ + Sbjct: 77 -------------QPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVAPAA 123 Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + VE + + ++ G ++ ++LL LV+ Y+R D+ G F + G I++ Sbjct: 124 AVRRMLPPVEVWQNSQIHIETGRDIDPEQLLQKLVQMGYERTDMVAAPGEFSIRGGIIDV 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 + S E+ R+ +F +++ I +I N + + VT P Sbjct: 184 Y-SLTEENPVRIELFDTEVDSI---------RIFNTDDQRSLETRDEVTIGPAKELI--- 230 Query: 399 IKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449 +++E + R +E +G + + L+Q I D E L+ Q + Y Y Sbjct: 231 VRDEDRQRALEQIDQGLANSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYF 290 Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y P+++LL +DE Sbjct: 291 Y-----EKPASLLDYFPKNTLLILDE 311 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V Y H ++ E ++ + G+ DVLV ++ G+DIP + + DADK G Sbjct: 858 DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7] gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7] Length = 1173 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 17/227 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T ++ ++ ++P I++ N A QL +F ++ P + + F Sbjct: 27 QLVTGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQLMEDFADWVPEDRLHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 D I E S+ R AT L E+ ++V + Sbjct: 82 ---------PVDEMIYAEMSVASPEARAERVATLDFLLSEKYGVVIVPLAGVRKLLPPKA 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + +K G ++ L LV Y RQ + G F + G I+I+ S E+ Sbjct: 133 LWKAAQFTIKQGGELDLTNLAQRLVDMGYTRQQLVSTPGEFSIRGGIIDIY-SLTEEFPV 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 R+ +F +++ + F + + I+ +E I I S V + L A Sbjct: 192 RIDLFDTEVDSLRYFDAASQRSIQTIEKIIILPASDTVYTKEQLTAA 238 >gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica ACS-049-V-Sch6] gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica ACS-049-V-Sch6] Length = 1096 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 43/265 (16%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS- 211 Q ++ LK + K ++ G++GS K+F +++ I Q +I++ + +L+ Sbjct: 11 QNPSMTDGLKAFRQKGK-SVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHDKEHKELWER 69 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLER 269 + F+P+ V F P T+ + S+ Q +MR S+L Sbjct: 70 DLAFFWPNVQVLPF-------------PITERVEFTTVARSLEGQGAQMR---ALSMLAW 113 Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKR 319 N +VV + ++E +Q +V L++ S+E+ ELL LVK Y+R Sbjct: 114 NRPVVV--------LATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYER 165 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D RG F V GD +IFP + +D R+ FG++I+ + F T R++E + Sbjct: 166 VDQVEQRGHFSVRGDIFDIFPVNSDDPI-RMEFFGDEIDTMRHFSVDTQ---RSIEMVDA 221 Query: 380 Y-ANSHYVTPRPTLNTAMKYIKEEL 403 Y ++T +T + Y K+ L Sbjct: 222 YTVTPFFLTSDDADSTLLSYAKDGL 246 Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 ++R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 DLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262] gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262] Length = 1179 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 ID---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 + +++++ + L EL KE + Q L + + DLEML S + + +Y+ P Sbjct: 240 VTRLEKKMTLTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 293 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 294 --PASLFDYLPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii FI9785] gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii FI9785] Length = 1165 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 EK LL GV + ++++A Q+ I++ N+ A L E N P + V F Sbjct: 23 EKRSLLTGVNSGAFAAVLMQMLKAWQQTLILVEDNEEKAQTLLDELGNLLPDDMVFGF-- 80 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P T T I +++++ + A + R +VV+ + Y + Sbjct: 81 ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 +++ K + +L L + Y+R+ I G F GD ++I+P E+ Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILDIYPLDQEN-P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ +FG++++ + EF T + + ++I I V A++ IK+++ Sbjct: 190 IRIELFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEKIKQDMSEST 249 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 E E ++ +++LE G + YL R+ L +Y+ + Sbjct: 250 AEEES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295 Query: 468 DSLLFVDE 475 D LL D+ Sbjct: 296 DGLLLFDD 303 Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ Y+H + + +I+ +FD+LV ++ G+D+P + + DAD G L Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909 Query: 668 KTSLIQTIGRAAR 680 L IGR+AR Sbjct: 910 LYQLRGRIGRSAR 922 >gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis BCW-1] Length = 1200 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + F +A + + RP + + A L + ++ P + V + S+ + E Sbjct: 38 AARPFAVAALARSAGRPVLAVTATGREAEDLAAALRSLLPPDRVVEYPSW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ V + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLAHPRVDDPAAGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G S + +E++ L Y R ++ RG F V G +++FP E+ R+ + Sbjct: 149 -VSLRSGQSADLEEIVDGLAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRIEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2] gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2] Length = 1179 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/324 (21%), Positives = 137/324 (42%), Gaps = 32/324 (9%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 ++ ++ GI + Q+L G++GS +T ++ + E RP +V+ N + A +LY + N Sbjct: 14 VSSIMSGIEEGLREQMLAGLSGSARTLFLSSIYEQSGRPMLVVTHNLLQAQKLYDDIVNL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVV 275 + E ++ + I E I + ++ R A + I++ Sbjct: 74 AG--------------ESEVFLYPANELIAAEMGIASPELKAQRIEALNYWSKYKTGIMI 119 Query: 276 SSVSCIYGI----GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 ++ + I G + Y + LKIGD + E L + V+ Y R ++ G F V Sbjct: 120 VPMAGLRKILPPPGHWQKYQ---LSLKIGDEL-TDEQLKNFVRMGYVRSEMVSSPGEFSV 175 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G I+I+P D R+ +F +++ I F + + I I + Sbjct: 176 RGGIIDIYPLTEADPV-RIELFDTEVDSIRTFSLEDQRSKEKLNEISIGPATEIPLDSEH 234 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 T ++ +++ L L +L+ + +L Q + Y+LE L + + Y + Sbjct: 235 FQTLIEKLEKGLGSSLKKLKDD---KAKTQLAQNVGYELEQLRMGNKPEHLFKYLSFAF- 290 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475 E +L +Y+P + L+F+DE Sbjct: 291 ----EEGSSLVDYLPANGLIFIDE 310 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DADK G Sbjct: 857 DARVTYAHGKMTENELESVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGL- 915 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 916 ---SQLYQLRGRVGRS 928 >gi|291546533|emb|CBL19641.1| hypothetical protein CK1_15270 [Ruminococcus sp. SR1/5] Length = 461 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%) Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV- 278 NA E + Y Y + + P D + + R R R+LLE+ + VV+S+ Sbjct: 61 NAKEIYEDYRFYDKNVYFYPAKDLLFFQADIHGNLLIRQRMRVIRALLEQEEVTVVTSID 120 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 C+ + +E ++ K ++ +L LV+ Y+R + G F V G I+I Sbjct: 121 GCMDFLMPLEKIRSRLLHFKSDSVIDLDQLKEELVELGYERTGQVELPGQFSVRGGIIDI 180 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +P ED WR+ ++ ++++ I F + + + NV+ I IY Sbjct: 181 YPL-TEDNPWRIELWDDEVDSIRSFDAESQRSLENVDEITIY 221 >gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174] gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174] Length = 1108 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSV 278 +A E + Y Y + Y P D + + R R R+LLER D I VV+S+ Sbjct: 61 SAKELYEDYRFYDKRVYYYPAKDLLFFQADIHGNLLIRQRMQVIRALLEREDEITVVTSI 120 Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 C+ + +E + ++ + +++ +L ++LV Y+R + G F + G I+ Sbjct: 121 DGCMDYLVPLEKIEKQLIHFRNDSTLDMDKLTAALVHMGYERVGQVEMPGQFSIRGGIID 180 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 I+ S E+ WR+ ++G++I+ I F + + + N++ + IY Sbjct: 181 IY-SLTEENPWRIELWGDEIDSIRSFDAQSQRSLENLDDVTIY 222 >gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis KBAB4] gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis KBAB4] Length = 1176 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F ++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PE+ ++ +DE Sbjct: 292 KEPASLIDYLPENGVVILDE 311 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836] gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836] Length = 1212 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 VQL +GDSVE +++++ L Y R D+ RG F V G I++FP E+ RV FG Sbjct: 156 VQLHVGDSVELEDVVTRLAAAAYNRVDLVERRGEFAVRGGIIDVFPP-TEEHPLRVDFFG 214 Query: 355 NDIEEISEF 363 +D+EEI F Sbjct: 215 DDVEEIRYF 223 >gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001] gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001] Length = 1189 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/341 (21%), Positives = 139/341 (40%), Gaps = 35/341 (10%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G + + + + A P +V+ P A + + + ++ Y S Y Sbjct: 31 LSGAGRAARALISSALAGAAHAPLLVIVPTLEEAGRWAALLELMGWPSSQLYPTSEGSPY 90 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 E + P ++ + ++E +DR A+R+ L IV + + + + Sbjct: 91 --EGFDPTSEITWGQLQVLSELLDRSEDGASRNRL----AIVATERALQPHLPPPAALEA 144 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + L+ G SV+ +EL +L + Y R GT+ GD +++FP E + R+ Sbjct: 145 RCLSLRKGQSVDLEELAGTLTQLGYARVPSIDQEGTWSRRGDIVDVFPVSAE-LPVRLEF 203 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG ++E++ EF P + + + E +++ + P + A++ E +L+ E Sbjct: 204 FGEELEKLREFDPTSQRSLDATEVVRLTPTGYT----PLIADALRESMPEGLEQLLSPEA 259 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + +LLE G+ + + R L G E P +L +Y+P +++ Sbjct: 260 QEQLLEG-----------------GTPEGL----RRLMGLAWAE-PASLLDYLPAGTVIA 297 Query: 473 VDESHVTIPQISGMYRGDF-HRKATLAEYGFRLPSCMDNRP 512 VDE + Y H E G LP+ + +RP Sbjct: 298 VDERRHCLAHGQQWYEHAVEHHAEVTRELGAALPAVL-HRP 337 >gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429] gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429] Length = 1188 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 13/221 (5%) Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 D R A R+LL + + IVV +S + E + Q ++ KI +S Q++L L++ Sbjct: 106 DLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIE 165 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y +Q + G F V G+ ++I+P + D R+ F +++E + F + + + + Sbjct: 166 MGYNKQTLVANPGEFSVRGEIVDIYPINF-DEPIRLDFFDDELESMRTFDADSQKSLNKI 224 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + + S ++ PR + +K +L+ ++ + + E ++L + LE + Sbjct: 225 KQASVSPVSDFLLPRAEFSDGLK----QLEQAFVDYLNKLKGAEKKKLTEFFNPLLEAAK 280 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + +S + ++FEY+ + L+ +D+ Sbjct: 281 HFSYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDD 314 >gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster] Length = 717 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 32/203 (15%) Query: 581 QGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 QGL R ++ V TK+ A+ LT L + N+ +H + ER E + D R GK +VLV Sbjct: 522 QGLGTERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNVLV 581 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKS 696 N+ GLDI V I D + + IGR R N K I + D+ Sbjct: 582 ATNVAARGLDIENVQHVIIFDLSD-----NIEEYVHRIGRTGRCGNVGKAITFFDSDDNE 636 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED----AATTNISIDAQQ 752 D T R ++ + + + P+ LE+ A+ T SI + Sbjct: 637 -----DRTVARSLVKVLSDAQQEV--------------PVWLEEIAFSASGTFSSIGSTF 677 Query: 753 LSLSKKKGKAHLKSLRKQMHLAA 775 S+ ++G +H+ Q H+ Sbjct: 678 ASVDSRRGVSHIPGGHAQSHIPG 700 >gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1] gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1] Length = 1188 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 13/221 (5%) Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 D R A R+LL + + IVV +S + E + Q ++ KI +S Q++L L++ Sbjct: 106 DLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIE 165 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y +Q + G F V G+ ++I+P + D R+ F +++E + F + + + + Sbjct: 166 MGYNKQTLVANPGEFSVRGEIVDIYPINF-DEPIRLDFFDDELESMRTFDADSQKSLNKI 224 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 + + S ++ PR + +K +L+ ++ + + E ++L + LE + Sbjct: 225 KQASVSPVSDFLLPRAEFSDGLK----QLEQAFVDYLNKLKGAEKKKLTEFFNPLLEAAK 280 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + +S + ++FEY+ + L+ +D+ Sbjct: 281 HFSYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDD 314 >gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus SK60] gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus SK60] Length = 777 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 ++G I+ T TKR +E++ E L + + + Y+H ++ +R I+ DLR GKFD++V Sbjct: 324 ERGQAIIFTA-TKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVAT 382 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+P V D R + IGR+ R Sbjct: 383 DVAARGLDLPNITHVFNYD-----LPRQVEDYVHRIGRSGR 418 >gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44] gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44] Length = 1098 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 42/249 (16%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 R+ ++ G++GS K+F +++ A +++P +++ +K + F+P+ V+ F Sbjct: 24 RKGKSVIYGLSGSQKSFLLSQSFSAGLKKPVVIVVHDKDHKEMWERDLAFFWPNVPVQSF 83 Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 P TD + S+ +Q +MR A LL + VV Sbjct: 84 -------------PITDHVDFTTVARSLEDQGAQMRALA---LLAWQEPAVV-------- 119 Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I + E +Q +V + DS+E+ L LV Y+R D RG F V G Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDSIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D ++I+P + D R+ FG++I+ + F+ + Q R++E I+ Y + + + + Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGKSDAD 235 Query: 394 -TAMKYIKE 401 T + Y+KE Sbjct: 236 STLLSYVKE 244 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 +R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 GLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes HL037PA1] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA1] gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA2] gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes HL086PA1] gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes HL082PA1] gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes HL053PA2] gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes HL078PA1] gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes HL092PA1] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes HL013PA1] gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes HL087PA2] gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes HL025PA1] gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes HL059PA1] gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes HL046PA2] gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes HL036PA1] gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes HL036PA2] gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes HL063PA1] gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes HL063PA2] gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA4] gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes HL050PA1] gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes HL050PA3] gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes HL067PA1] gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes HL027PA1] gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes HL002PA1] gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes HL002PA2] gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes HL072PA2] gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes HL002PA3] gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes HL072PA1] gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes HL059PA2] gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes HL046PA1] gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes HL030PA1] gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes HL030PA2] gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes HL096PA3] gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes HL013PA2] gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes HL087PA3] gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes HL083PA2] gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes HL087PA1] gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes HL025PA2] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius HKU10-03] gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius HKU10-03] gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius ED99] Length = 1170 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 31/308 (10%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G+T + K +A++ ++ R +++ N A ++ ++ F P + V Y Y Sbjct: 28 LVTGLTPAAKASIIAELYQSDHRQVVLVTNNLYQADKIEADLLQFVPDDEV------YKY 81 Query: 232 YQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 P D E+ S+ + ++ +R+R + T +R +V + E Sbjct: 82 -------PVQDMMTEEFSTQSPELMSERVR-TLTALANDRRGLFIVPLNGLKKLLTPKEM 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + ++GD +E LL LV Y+R+ + G F V G I+++P E + R Sbjct: 134 WRDHQMTFEVGDDIEIDALLEKLVSMGYRRESVVSNIGEFSVRGGIIDVYPLLGEPI--R 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ I +F T + N+++ +I Y+ M +K + + Sbjct: 192 IELFDTEVDSIRQFDVETQRSSENIDSAEITTAHDYIMTEAVRQQMMTALKSAYETTRPK 251 Query: 410 LEKEGRLLEAQRLEQRITYD-LEMLETTG-SCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 ++K R Q L++ TYD +M+E T Q + ++ E P T+ +Y+ + Sbjct: 252 IDKSVR----QDLKE--TYDSFQMVEDTHFDPQILRRLVAFMY-----EKPTTILDYLKD 300 Query: 468 DSLLFVDE 475 ++++ VDE Sbjct: 301 NAIILVDE 308 >gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA2] gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA3] gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes HL027PA2] gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes HL020PA1] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes HL036PA3] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes SK187] gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes SK187] Length = 1198 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 71 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 129 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 130 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 174 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 175 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 217 >gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165] gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165] Length = 1198 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 71 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 129 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 130 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 174 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 175 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 217 >gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342] gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342] Length = 1176 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes HL074PA1] gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes HL083PA1] gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes HL056PA1] gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes HL053PA1] gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes HL045PA1] gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes HL005PA1] gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes HL038PA1] gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes HL096PA2] gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes HL043PA1] gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes HL043PA2] gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes HL099PA1] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266] Length = 1222 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 95 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 153 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 154 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 198 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 199 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 241 >gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes KPA171202] gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes KPA171202] Length = 1222 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 95 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 153 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 154 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 198 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 199 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 241 >gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241] gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293] gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241] gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293] gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1176 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis] Length = 712 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +IL+ V KR+A+ + YL E+N R MH + +R + + D R G F++LV + Sbjct: 527 KILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGVFNILVATAVAA 586 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDI G+V D KE + IGR R Sbjct: 587 RGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGR 618 >gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1176 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes SK137] gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes SK137] Length = 1222 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 95 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 153 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 154 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 198 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 199 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 241 >gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1178 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 16 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 75 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 76 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 122 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 123 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 182 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 183 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 241 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 242 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 293 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 294 NEPASLIDYLPEDGVVILDE 313 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 860 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 918 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 919 ---SQLYQLRGRVGRS 931 >gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L] gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L] Length = 1176 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1176 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205] Length = 1183 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 28/219 (12%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L+ GD E + L +L + Y+R G++ GD +++FP E + R+ FG Sbjct: 141 LSLRKGDEFELEALGETLTRLGYERVTSIEQEGSWSRRGDIVDVFPVSAE-LPVRLEFFG 199 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 ++E++ EF P + + + +E +++ + + P + A++ E +L+ E Sbjct: 200 EELEKLREFDPASQRSLDPIEVVRLTPSGY----GPLIADALREGMPEGLDQLLSPEASE 255 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 +LLE G+ + + R L G E P +L +Y+P+ +L+ +D Sbjct: 256 QLLEG-----------------GTPEGM----RRLMGLAWSE-PASLLDYLPDGTLIAID 293 Query: 475 ESHVTIPQISGMYRGDF-HRKATLAEYGFRLPSCMDNRP 512 E + Q + H AE G LP+ + RP Sbjct: 294 ERRHCLSQGQQWFDHAIEHHAEVCAELGVELPAVLHRRP 332 >gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes HL007PA1] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|260906157|ref|ZP_05914479.1| transcription-repair coupling factor [Brevibacterium linens BL2] Length = 1197 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 20/188 (10%) Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 +T A P +++ A L ++ +++ F S+ + E PR Sbjct: 45 RTLVSADSGSTTSAPQLIVTATTREAEDLARSLADWVAEDSIAIFPSW-ETLPHEKLSPR 103 Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-----IYGIGSVESYSQMIV 295 +DT ++ ++ R+ H + +R+ +++ V + G+G +E V Sbjct: 104 SDTVGQRLQILH----RLAHPSP----DRHLAFIIAPVRAFLQPLVKGLGDIEP-----V 150 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +L +GD E +L L + Y R D+ RG F V G ++IFP E A R+ FG+ Sbjct: 151 ELGVGDEYEIDQLSQRLTELAYSRVDMVSRRGEFAVRGGIVDIFPPTDEH-ALRIEFFGD 209 Query: 356 DIEEISEF 363 +I+EI EF Sbjct: 210 EIDEIREF 217 >gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes HL097PA1] Length = 1208 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + +AV Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G V V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987] gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97] gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187] gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1] gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26] gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987] gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97] gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187] gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1] gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26] Length = 1176 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W] gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99] gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108] gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820] gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102] gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42] gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201] gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1] gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI] gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W] gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108] gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99] gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820] gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102] gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1] gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201] gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42] gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar anthracis str. CI] Length = 1176 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGVVILDE 311 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101] Length = 1185 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 69/343 (20%), Positives = 144/343 (41%), Gaps = 41/343 (11%) Query: 174 LGVTGSGK---TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 L ++G+G+ + + A + P +V+ P A + + + +A Y S Sbjct: 29 LRMSGAGRGARALVSSALATAAEAPLLVVVPTLEEAGRWAALLELMGWSSAQLYPTSEGS 88 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 Y+P + P ++ + ++E +D R ++ IV + + + + Sbjct: 89 PYEP--FDPTSEITWGQLQVLSELLDEERAASM--------AIVATERALQPHLPPPAAL 138 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + L+ GD+V+ +EL +L + Y+R G++ GD +++FP E + R+ Sbjct: 139 KAQCLSLRKGDTVDLEELGETLTRLGYERVTSIEQEGSWSRRGDIVDVFPVSAE-LPVRL 197 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG ++E++ EF P + + + +E +++ + + P + A++ + +L+ Sbjct: 198 EFFGEELEKLREFDPASQRSLDPIEVVRLTPSGY----GPLIADALRDGMPDGLDQLLSP 253 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 E +LLE G+ + + R L G E P +L Y+P ++L Sbjct: 254 EALEQLLEG-----------------GTPEGM----RRLMGLAWSE-PASLLSYLPANTL 291 Query: 471 LFVDESHVTIPQISGMY-RGDFHRKATLAEYGFRLPSCMDNRP 512 + VDE + + + H AE G LP+ + P Sbjct: 292 IAVDERRHCLAHGQQWFDHANEHHAEVCAELGVELPAVLHRTP 334 >gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023] Length = 899 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 25/321 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + + + P + + S + ++ R A LL IV+ Sbjct: 74 IDVDKLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 + +++++ + L EL E E + + LE+ DLE L S + + +Y+ P Sbjct: 240 VTRLEKKMTLTLNELKENEDKQXXVENLEE----DLEKLR---SGVKPDMFFKYIGLAYP 292 Query: 455 GEPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 D--PASLFDYLPKNTAILLDE 311 >gi|295102722|emb|CBL00267.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii L2-6] Length = 686 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 14/141 (9%) Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKT 618 EI S R QV V I A GL + K ED+ + YL +R RV MH ++K Sbjct: 467 EIDSGR-QVYIVCPAIEDAGGSGLNAV-----KSYYEDIAKAYLPDR--RVGLMHGKLKP 518 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+ E++ D + G+ D LV ++ G+D+P ++ I +A++ G ++L Q GR Sbjct: 519 KEKAEVMDDFKSGRLDALVSTTVIEVGVDVPNATVMVIENAERYGL----SALHQLRGRV 574 Query: 679 ARN-VNSKVILYADTITKSIQ 698 R S L +D ++S+Q Sbjct: 575 GRGAAESWCFLVSDNASESVQ 595 >gi|329120997|ref|ZP_08249628.1| primosome assembly protein PriA [Dialister micraerophilus DSM 19965] gi|327471159|gb|EGF16613.1| primosome assembly protein PriA [Dialister micraerophilus DSM 19965] Length = 787 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%) Query: 568 VEDVYDEINLAAQQGLRILLTVL-TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 E +D I + + +++ T+R+ +++ +YL E + + S K +I+ Sbjct: 532 CEKFFDVITICPKCSNKLIYKGFGTQRIEDEIHKYLPELKCKRLDIDSISKKGSSAQILN 591 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSK---TSLIQTIGRAA 679 D R G FDVL+G L+ +G DIP+ V IL+AD G+L ++ +L Q GRA Sbjct: 592 DFRSGLFDVLLGTQLVTKGHDIPDVKTVGILNADGMLNTPGYLSAENTFNTLTQCAGRAG 651 Query: 680 RN 681 RN Sbjct: 652 RN 653 >gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1420 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 7/79 (8%) Query: 614 SEVKTL-ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 +E+ TL E+ +++ +LR+GK +VL+ N+L EG+D+P C +V D K+ LR S I Sbjct: 440 TELSTLVEQKDVLTELRVGKTNVLIATNVLEEGIDVPACNIVICFDPPKD--LR---SFI 494 Query: 673 QTIGRAARNVNSKVILYAD 691 Q GR AR+ S+++L+ D Sbjct: 495 QRRGR-ARDRQSRLVLFID 512 >gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al Hakam] gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al Hakam] Length = 1207 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 45 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 104 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L I+V+ Sbjct: 105 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 151 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 152 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 211 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 212 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 270 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K+++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 271 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 322 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 323 NEPASLIDYLPEDGVVILDE 342 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 889 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 947 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 948 ---SQLYQLRGRVGRS 960 >gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3] gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3] Length = 1176 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/320 (18%), Positives = 146/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +++++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IEHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PED ++ +DE Sbjct: 292 KEPASLIDYLPEDGIVVLDE 311 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917] gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917] Length = 1184 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 268 ERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 +R D +V++ C+ + ++ ++ L+ GD+V+ +EL S L + Y+R Sbjct: 115 DRPDLAIVATERCLQPHLPPPQALAERCRSLRKGDTVDLEELASCLSQLGYERVSSIDQE 174 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 GT+ GD ++IFP E + R+ FG+D++++ EF P + + + +E++++ Sbjct: 175 GTWSRRGDIVDIFPVSSE-LPVRLEFFGDDLDKLREFDPASQRSLDAIESLRLT------ 227 Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446 PT + + I E+L+ R+ + EG LL Q L+ E+LE G+ + + Sbjct: 228 ---PTGFSPL--IAEQLRERMPD-GLEG-LLSEQALQ-------ELLE-GGTPEGM---- 268 Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 R L G E P +L +Y+P + +DE Sbjct: 269 RRLMGLA-WEAPASLLDYLPAHCCVAIDE 296 >gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21] gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21] Length = 1157 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 14/194 (7%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF-FPHNAVEYFVSYYDYYQ 233 GV GS + +++++ P +V+ ++ A +L E + F H AV F + D Sbjct: 27 GVDGSAPAYLLSRLMTESGPPLVVITADQESADELARELRFFSCSHGAVLPFPGW-DVTP 85 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 EA P D E+ +++ +D R+ +VV + + + E+ + Sbjct: 86 FEAASPHPDLVGERLNALVRLLD----GGARA-------VVVPLAAALQRVIPRETLGGV 134 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 L G+ +E++ L+ LVK Y I RG+F V G ++IFP E R+ F Sbjct: 135 CQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSVRGGILDIFPPDQER-PVRIEFF 193 Query: 354 GNDIEEISEFYPLT 367 G+ +E + F P+T Sbjct: 194 GDLVETMRLFDPVT 207 >gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum 255-15] gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum 255-15] Length = 1171 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/317 (23%), Positives = 131/317 (41%), Gaps = 47/317 (14%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV------EY 224 QL+ G+ SGK +A + + ++ +++ N A +LY + P V E Sbjct: 28 QLITGLMNSGKALFIAGIYQETKKRFVIVTHNMFQAQKLYDDLIELVPEQDVMLYPVDET 87 Query: 225 FVSYYDY-YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 + Y PE R +T RH R L + +++ V Sbjct: 88 LAAELSYGASPELRATRIET---------------RH---RLLTTDDGILIIPLVGLRRY 129 Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343 + + + ++K GD + + + LV Y+R G F V G I+++P + Sbjct: 130 VPTASDFLDHTKRIKPGDVLSIPDFIQELVDAGYERTATVTTPGEFAVRGSIIDLYPLTV 189 Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-ETIKIYANSHYVTPRPTLNTAMKYIKEE 402 E +R+ +F +++ I F T + + + E + A H+ T R L TA ++ Sbjct: 190 ER-PYRLDLFDEEVDSIYTFDAETQRSLGVIAEALVPPATEHFAT-REGLKTAGDKLR-- 245 Query: 403 LKMRLIELEKE----GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 RL + KE +L A LE+ I YD+E+LE + + Y+ L Sbjct: 246 ---RLYDATKERVQSTEVLAA--LEEGIAYDVEVLEGGDRPKQLAKYAPLLY-------E 293 Query: 459 PTLFEYIPEDSLLFVDE 475 TL + I +D++L VDE Sbjct: 294 TTLLDDI-KDAVLIVDE 309 >gi|313891976|ref|ZP_07825577.1| primosomal protein N' [Dialister microaerophilus UPII 345-E] gi|313119619|gb|EFR42810.1| primosomal protein N' [Dialister microaerophilus UPII 345-E] Length = 787 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%) Query: 568 VEDVYDEINLAAQQGLRILLTVL-TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 E +D I + + +++ T+R+ +++ +YL E + + S K +I+ Sbjct: 532 CEKFFDVITICPKCNNKLIYKGFGTQRIEDEIHKYLPELKCKRLDIDSISKKGSSAQILN 591 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSK---TSLIQTIGRAA 679 D R G FDVL+G L+ +G DIP+ V IL+AD G+L ++ +L Q GRA Sbjct: 592 DFRSGLFDVLLGTQLVTKGHDIPDVKTVGILNADGMLNTPGYLSAENTFNTLTQCAGRAG 651 Query: 680 RN 681 RN Sbjct: 652 RN 653 >gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii] gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii] Length = 603 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A G L+ V TKRMA+ LT++L +N R +H + ER + + GK D+L Sbjct: 385 LSASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALGSFKTGKADLL 444 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP + +++ D G + + IGR R N+ + Sbjct: 445 VATAVAARGLDIPN--VTHVINYDLPGDV---DDYVHRIGRTGRAGNTGL 489 >gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus DSM 13965] gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus DSM 13965] Length = 1196 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 153/381 (40%), Gaps = 52/381 (13%) Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 E ++ +++L+ G +++ +LL+ LV Y+R + G V G ++++P E V Sbjct: 141 ERWAAGLIELEPGQVMDRDDLLTRLVAAGYQRAEQVDRPGELAVRGGIVDVYPPAGEPV- 199 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ FG++I+ + F P T + +E +++ V + + + EL L Sbjct: 200 -RIEFFGDEIDSLRRFDPGTQRSTGTLERVRLAPARELVLDEASWRRGLAALAAELDS-L 257 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP-PTLFEYIP 466 + + R A++L R+ DL LE S + E+Y + EP TL +Y P Sbjct: 258 RDQTRHRRGGAARQLLDRLEQDLVRLEAERSIELAEHYLPFF------EPEMATLLDYAP 311 Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----CMDNRPLRFEEWNCL- 521 +L E ++ R R+A L G LP+ +D L W L Sbjct: 312 GPALAVWVEPRSLEEAVADRERQWQERQADLLSRGEILPAQAALYLDEPAL----WGALA 367 Query: 522 -RPTTI--VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---RTQVEDVYDEI 575 RP V++ PG QG Q+ PV R A Q + +E+ Sbjct: 368 SRPVLYLSVLARAPG-------QGPEPRQVY--------PVTARPAPMFHGQWDLFEEEV 412 Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 +Q R+LL A L + L + ++ R +ER+ + +V Sbjct: 413 RTWQRQQYRVLLVAGDGDRAGRLRQALLDADVAAR-------QVERLTLP-----APGEV 460 Query: 636 LVGINLLREGLDIPECGLVAI 656 LV L EG ++P V + Sbjct: 461 LVAPAALSEGFEVPALRWVVL 481 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R H ++ E ++ D GK DVLV ++ GLDIP + + DAD+ G Sbjct: 875 RFAVAHGQMAEGELERVMVDFMEGKADVLVCTTIIESGLDIPNVNTLIVEDADRMGL--- 931 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 932 -AQLYQLRGRVGRS 944 >gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484] gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484] Length = 1222 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 122/288 (42%), Gaps = 48/288 (16%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP +V+ A +L + + + P + V ++ + E PR+DT + + Sbjct: 59 RPLVVVTATGRDADELAAALRCYLPEDVVAVLPAW-ETLPHERLSPRSDTVARRLAVFR- 116 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVS----CIYGIGSVESYSQMIVQLKIGDSVEQKELL 309 R+ H +V+ + + G+G +E V + +GD V+ +L Sbjct: 117 ---RLAHPGQDGPTGPVRVLVLPVRALLQPVVEGLGELEP-----VAVSVGDRVDLDDLT 168 Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369 LV Y+R D+ RG F V G +++FP +D RV ++G D+EEI F Sbjct: 169 ERLVAAAYQRVDMVEKRGEFAVRGGILDVFPP-TDDHPLRVELWGEDVEEIRWF------ 221 Query: 370 KIRNVETIKIYANSHYVTP-RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 + + ++++ + + P R L T +E++ R A L +R+ Sbjct: 222 SVADQRSLEVAQHGLWAPPCREILLT------DEVRAR------------AASLAERLPG 263 Query: 429 DLEMLETTG---SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 ++ML+ + + +E+ + L R + + +P+D+LL V Sbjct: 264 AVDMLDKLAQGIAVEGMESLAPALVERM-----VPVLDLVPDDALLVV 306 >gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar sotto str. T04001] gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar sotto str. T04001] Length = 1067 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 99/188 (52%), Gaps = 9/188 (4%) Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 E + Q V++ +G ++ LL +L Y+R+ + G F + G ++I+P E++ Sbjct: 24 ELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGILDIYPL-TEELP 82 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 +R+ F +++ I F + E++K + ++ + L + +++++E L + Sbjct: 83 FRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSGIQHLEEGLTKTM 142 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 +L + L+ LE +++++EML+ + QSIE +YL+ + P +L +Y+PE Sbjct: 143 QKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY--KEPASLIDYLPE 194 Query: 468 DSLLFVDE 475 D ++ +DE Sbjct: 195 DGVVILDE 202 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 749 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 807 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 808 ---SQLYQLRGRVGRS 820 >gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795] gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795] Length = 1131 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 140/323 (43%), Gaps = 46/323 (14%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +++ I R+ L G+ K + + + RP + +A + + A ++Y+E + F+ Sbjct: 17 EIINSICERKGALQLNGLLDMQKPHITYSIFKELARPTLFIANSDLEAKKVYNELR-FYT 75 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 + VEY + E Y D K+ S E+ ++R L ++ IVV+SV Sbjct: 76 KDKVEYLGT------DEIYFYHLDA---KDRS--EEAKKLR--VLLKLAKKQKTIVVTSV 122 Query: 279 SCIYGIGSVESYSQMIVQL------KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 I + Y V L KIGD + +EL +LV+ Y+R G F + Sbjct: 123 DAI-----LRKYIPKKVLLDNIFTYKIGDIINLEELSQNLVRLGYERVSRIEGLGQFSIR 177 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 G I+++ + R+ +F ++I+ I F + + I ++ + I + ++ P T Sbjct: 178 GGIIDVYSLEYTN-PIRIELFDDEIDSIRTFDVFSQKSIDKIKKVVITPSREFIYPEDT- 235 Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 +A++ IKEE + + + ++E + Q +ENY YL Sbjct: 236 TSAVEKIKEETN---------------KYTDDDVLKNIENISDRTYFQGVENYIDYLY-- 278 Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475 + ++F Y+P++ ++ + + Sbjct: 279 --DDQNKSIFSYLPDNGIVVMSD 299 >gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27] gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27] Length = 1098 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 42/249 (16%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 R+ ++ G++GS K+F +++ A +++P +++ +K + F+P+ V+ F Sbjct: 24 RKGKSVIYGLSGSQKSFLLSQAFSAGLKKPVVIVVHDKDHKEMWERDLAFFWPNVPVQSF 83 Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 P TD + S+ Q +MR A LL + VV Sbjct: 84 -------------PITDHVDFTTVARSLENQGAQMRALA---LLAWQEPAVV-------- 119 Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I + E +Q +V + D++E+ L LV Y+R D RG F V G Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D ++I+P + D R+ FG++I+ + F+ + Q R++E I+ Y + + + + Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGKSDAD 235 Query: 394 -TAMKYIKE 401 T + Y+KE Sbjct: 236 STLLSYVKE 244 Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 +R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 GLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|61657474|emb|CAI44386.1| primosomal protein N [Thermotoga sp. KOL6] Length = 736 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 T+++ ++L ++ ++ +V+ + EV +E + I DL G+ D+LVG ++ + ++ Sbjct: 506 TEKVEKELQKFFPDK--KVKRVDREVVEDIMEMEDYIDDLTAGEIDILVGTKMITKSFNV 563 Query: 649 PECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-A 700 PE GLV +LD D F LR+ ++Q +GRA+RN + IL +S+ + A Sbjct: 564 PEVGLVCVLDVDSLVFLPDFSASLRTFQLIVQALGRASRNEEGRAILQTYNPDESVIMRA 623 Query: 701 IDE 703 +DE Sbjct: 624 VDE 626 >gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701] gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701] Length = 1187 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 130/303 (42%), Gaps = 36/303 (11%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G + + + + RP +V+ P A + + + A Y S Y Sbjct: 31 LSGAGRAARALITSALARRGGRPLVVIVPTLEEAGRWAALLELMGWPTAQLYPTSEGSPY 90 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 +P + P ++ + + E ID + RS IV + + + + + Sbjct: 91 EP--FDPTSEITWGQLQVLGELID----GSGRSW---AGAIVATERALQPHLPPPAALAA 141 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + L+ G SV+ +EL +L + Y+R G++ GD +++FP E + R+ Sbjct: 142 RCLSLRKGSSVDLEELADTLTRLGYERVPTIEQEGSWSRRGDIVDVFPVSAE-LPVRLEF 200 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 FG D+E++ EF P T + + +E +++ + P + A+ +E + L E Sbjct: 201 FGEDLEKLREFDPATQRSLDAIEAVRLTPTGYG----PLIADAL---RESMPEALTE--- 250 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 LL ++ LEQ +LE G+ + + R L G E P +L +Y+P +L+ Sbjct: 251 ---LLASEALEQ-------LLE-GGTPEGM----RRLMGLA-WEQPASLLDYLPGATLIA 294 Query: 473 VDE 475 VDE Sbjct: 295 VDE 297 >gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1179 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/320 (21%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIIIDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 ++ +++++ + L EL KE + Q L + + DLE L S + + +Y+ P Sbjct: 240 VQRLEKKMMLTLNEL-KENE--DKQALVENLEEDLEKLR---SGTKPDMFFKYIGLAYP- 292 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 293 -DPASLFDYLPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 760 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 21/126 (16%) Query: 583 LRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTL--------------ERIEIIRD 627 R +L V T+ A L E L N RY ++ T+ ++ E++ Sbjct: 520 FRAILFVKTRDSAHQLGEILNNISNKSTRYSFTKCVTVVGHGSNTDGGMSTSKQKEVVEA 579 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 R GK +V+V N+L EGLD+PEC LV +DA + T+LIQ+ GR AR+ NS+ + Sbjct: 580 FRTGKANVVVTTNVLEEGLDVPECNLVIRIDAPS-----TVTALIQSRGR-ARHRNSEFV 633 Query: 688 LYADTI 693 TI Sbjct: 634 AIIKTI 639 >gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus F0211] gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus F0211] Length = 1168 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 S+ QLL+G++ S K TMA +E + +++ A +L S+ V F Sbjct: 25 SKSTRQLLMGLSSSTKAVTMASCVEENHK-ILILTSTYSEAERLSSDLIELLGEEKVYTF 83 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285 ++ D +V + EK S E +D + S L IV + S ++ Sbjct: 84 LA--DDTPLAEFVFSSQ---EKIFSRLEALDFLLDSQQSGFL-----IVNVAASQLFLPD 133 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 V +++ + LKIG E K+L+ L YK+ +G F + GD ++IF Sbjct: 134 PV-NFNSAYIDLKIGQEYELKDLIHQLSNSGYKQVSQVFNQGEFSLRGDILDIFERS-SQ 191 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 + +RV FG++++ I F P I+NVE + I+ + + + +A K I+ Sbjct: 192 IPFRVEFFGDEVDGIRLFNPENQISIQNVEHVHIHPATDIIFTKADYKSAQKKIE 246 >gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271] gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271] Length = 1176 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +++ N A +++ + Sbjct: 14 IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G ++ L +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E+++ + ++ + L + Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 +K ++E L + +L + L+ LE +++++EML+ + QSIE +YL+ Sbjct: 240 IKRLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +L +Y+PED ++ +DE Sbjct: 292 NEPASLIDYLPEDGIVVLDE 311 Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 ---SQLYQLRGRVGRS 929 >gi|324990137|gb|EGC22075.1| DNA helicase RecG [Streptococcus sanguinis SK353] Length = 671 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + R +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGRQTQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R N S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGNKQSYAVLVANPKTES 582 >gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium SS3/4] Length = 1201 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/223 (19%), Positives = 102/223 (45%), Gaps = 3/223 (1%) Query: 229 YDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286 + Y++P ++ P D + R R + LLE +VV++V + + Sbjct: 70 FSYFEPNTWLYPARDLLFYSSDIHGNLLTRQRMQVFKHLLEDEGGVVVTTVDGLMDHLLP 129 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 + + + + +G +++ +E+ L Y+R G F V G +++FP E+V Sbjct: 130 LSRIKESCLNIMVGQTLDMEEIKHLLTGMGYERMGQVDGMGQFSVRGGILDVFPL-TEEV 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ ++G++++ I F + + I+ ++ + IY + + + + + ++ + K + Sbjct: 189 PVRIELWGDEVDSIRSFDAESQRSIQQMDEVTIYPAAELILTKEHIEEGILRLEADEKKQ 248 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449 + + EAQR+ + + +E L+ Q+++ Y RY Sbjct: 249 EKAFRDQKKPEEAQRIRRAVGELVESLKEGFDVQTLDAYIRYF 291 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ + +I+ D G+ DVLV ++ GLDIP + I DAD+ G Sbjct: 888 VAFAHGQMNEHQLEKIMLDFINGEIDVLVSTTIIETGLDIPNANTMIIQDADRLGL---- 943 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 944 SQLYQIRGRIGRS 956 >gi|162456478|ref|YP_001618845.1| helicase-related protein [Sorangium cellulosum 'So ce 56'] gi|161167060|emb|CAN98365.1| helicase-related protein [Sorangium cellulosum 'So ce 56'] Length = 808 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 G R L+ + R A ++L R +R+ +HS ++ R E + DL GK D L + Sbjct: 569 HPGERTLVFCCSIRHAHHACDFLAARGVRIAAVHSGPESAPREEALADLVAGKLDALCAV 628 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 +L EG+D+P V +L + S +Q +GR R + K L + ++ Sbjct: 629 DLFNEGIDLPNVDRVVMLRPTE-----SPVVFLQQLGRGLRVADGKARLTVLDFVGNHRV 683 Query: 700 AID 702 ID Sbjct: 684 FID 686 >gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus A6] gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus A6] Length = 1220 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 10/171 (5%) Query: 195 PAIVMAPNKIL--AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 P +V+A A L + + + P ++V F S+ + E PR+DT + + S+ Sbjct: 77 PGVVLAVTATGREAEDLAAALRAYLPADSVAEFPSW-ETLPHERLSPRSDT-VGRRLSVL 134 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ S L + + G+G + + V LK+G V +++ SL Sbjct: 135 RRLAHPESSTAERLRVVVAPVRAVVQPVVAGLGDL-----VPVTLKVGQDVPFTDVVRSL 189 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 Y R D+ RG F V G I++FP ED RV FG++++++ F Sbjct: 190 ADAAYARVDMVTHRGEFAVRGGIIDVFPP-TEDHPIRVEFFGDEVDQMRWF 239 >gi|323340718|ref|ZP_08080970.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644] gi|323091841|gb|EFZ34461.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644] Length = 680 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 Y +V +H +K+ E+ EI++D + GK+D+LV ++ G+D+P ++ ILDAD+ Sbjct: 497 YAPCYKVGLLHGRMKSDEKDEIMKDFKEGKYDILVSTTVVEVGVDVPNATVMVILDADRF 556 Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694 G L Q GR R S IL AD T Sbjct: 557 GL----AQLHQLRGRVGRGSKASYCILCADPKT 585 >gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM 2876] gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM 2876] Length = 1177 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/297 (18%), Positives = 128/297 (43%), Gaps = 20/297 (6%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 ++ + + V + G K + + K+ E + I+ +I A +LY +++ Sbjct: 16 NIIDDLKKKGNVPVAFGCVDQQKPYFIYKITEKFNKKLIITG-TEIRARELYEDYR---- 70 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 A++ YY P D + ++ R R L+ + +++++ Sbjct: 71 --AIDKNTYYY---------PAKDFIFYSADIRSNEVVRERLEVINHLINDREATIITTI 119 Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 C+ + + + + + +K GD ++ K L LV Y+ G F + G I+ Sbjct: 120 DGCMDKLVPQDIFRKNTINIKTGDDIDIKGLSERLVNAGYENAGQTEHSGQFAIRGGIID 179 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 IFP ++E+ R+ ++ +++ + F + + + N+E I I+ + + TL + +K Sbjct: 180 IFPVNMEN-PCRIELWDTEVDAMRLFDAESQRSVENIEEIDIFPATELLID-DTLASGIK 237 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 I+++ L KE ++ E+ +++ + E L +++Y +Y +NP Sbjct: 238 SIEKDAAKYSEALNKEAKITESNLIKKNVEELKEKLFVLKDRSGLDSYVKYFI-KNP 293 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ E +I+ D G DVLV ++ GLDIP + I DA+K G Sbjct: 863 VAFAHGQMSERELEKIMMDFINGDIDVLVSTTIIETGLDIPNVNTIIIHDANKYGL---- 918 Query: 669 TSLIQTIGRAAR 680 + L Q GR R Sbjct: 919 SQLYQLRGRVGR 930 >gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122] gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122] Length = 1168 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 96/194 (49%), Gaps = 15/194 (7%) Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343 + SVE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP Sbjct: 127 LTSVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIG 186 Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 E + R+ +F +I+ I +F T + N+E + I S Y+ + +++KEEL Sbjct: 187 EPI--RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEEL 240 Query: 404 KMRLIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTL 461 K ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ Sbjct: 241 KTAY--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTI 293 Query: 462 FEYIPEDSLLFVDE 475 +Y +D+++ VDE Sbjct: 294 IDYFQKDAIIAVDE 307 >gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM 10507] gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM 10507] Length = 1044 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 5/183 (2%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIV 295 Y P D + + + R R+LLE VV+SV C+ + + + +V Sbjct: 9 YYPAKDLLFFQADIHGNLLIKQRMQVVRALLEEESVTVVTSVDGCMDYLMPLGQIKENLV 68 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 L +++ +EL LV Y+R G F V G ++I+ S E+ WR+ M+G+ Sbjct: 69 CLNSESTIDLEELSKKLVWLGYERVPQVERSGQFAVRGGILDIY-SLTEENPWRIEMWGD 127 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +++ I F + + I N+ETI IY + + + ++ A + E+ L+ L++ R Sbjct: 128 EVDSIRSFDAYSQRSIENLETITIYPAAERLGEKGMVSFADYFPVEK---TLLILDEPNR 184 Query: 416 LLE 418 +LE Sbjct: 185 MLE 187 Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +++V + H ++ E +++ + G+ DVLV ++ GLDI + I D+D+ G L Sbjct: 729 DVQVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMIIHDSDRYG-L 787 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695 L IGR+ R + ++ ++I K Sbjct: 788 SQLYQLRGRIGRSNRTAYAFLMYRKNSILK 817 >gi|295108814|emb|CBL22767.1| Transcription-repair coupling factor (superfamily II helicase) [Ruminococcus obeum A2-162] Length = 693 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 18/186 (9%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+A ++ A LY +++ +YD + Y P D + + Sbjct: 53 LVIAADEKTAKDLYEDYR-------------FYD--KRVYYYPAKDLLFFQADIHGNLLI 97 Query: 257 RMRHSATRSLLERNDCI-VVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 R R R+LLER + I VV+S+ C+ + +E + ++ + S++ +L ++LV Sbjct: 98 RQRMQVIRALLERQEEITVVTSIDGCMDYLLPLEKIEKQLIHFRNDSSLDMDKLTAALVH 157 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y+R + G F + G I+I+ S E+ WR+ ++G++I+ I F + + + N+ Sbjct: 158 MGYERVGQVEMPGQFSIRGGIIDIY-SLTEENPWRIELWGDEIDSIRSFDAQSQRSLENL 216 Query: 375 ETIKIY 380 + I IY Sbjct: 217 DEIMIY 222 >gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus NCFM] gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus NCFM] Length = 1165 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/310 (20%), Positives = 127/310 (40%), Gaps = 33/310 (10%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++I + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQIISKLNEPLILVEENENKAQNLYGELSAILDSEQVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCI-YGIG 285 D I +++++ D + R A LL + IV+++ + Y + Sbjct: 81 -----------SLDATIATQTAVSSP-DELSSRIQALSFLLSKKAGIVITTPQGLQYKLS 128 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 + ++Q E EL + LV Y+++ + G F + GD ++I+P E+ Sbjct: 129 NPTDFAQAKRVFIPEKEYELTELNNWLVHSGYQKEALVAKPGEFAIRGDILDIYPLDREN 188 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 R+ FG++I+ + EF T + + ++ ++I A V + A + I++++ Sbjct: 189 -PVRIEFFGDEIDTVKEFNLATQRSTQEIDLVEITAAQDRVFSSDAIKKAAEKIRKDMA- 246 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 + ++ T L+ L+T G Q+ YL E P +L +Y+ Sbjct: 247 --------DAPAPEKAVKDHFTVALDNLDTGGLPQNYSFLVDYLI-----EKPSSLLDYL 293 Query: 466 PEDSLLFVDE 475 + + +D+ Sbjct: 294 APNGQILIDD 303 >gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560] gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560] Length = 1168 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 102/505 (20%), Positives = 203/505 (40%), Gaps = 73/505 (14%) Query: 176 VTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 VTG G++ +A I + + +++ + A+QLY + K F + V Y + ++ Sbjct: 29 VTGCGES-QLAHFINGLSNGYKQKVIVTFSATKASQLYQDLKGF-ADDVVMYPAKDFIFF 86 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYS 291 + + I + R + ++E + ++++ + + I +E Sbjct: 87 SADVH--------------GNLILQQRLEFIQKIVEDKPFTVILTPDAFMDKIMPIEKIK 132 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 +++ G ++ L S LV+ Y+ G F V G ++I+ + ++V +R+ Sbjct: 133 NNYLEIAEGSIIQMDALKSKLVQMGYEPVVQIDGPGQFAVRGSIVDIY-TLTDEVPYRID 191 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 + ++++ I F + + I N+E++KIY S Y + + M I+++L + + Sbjct: 192 FWDDEVDIIKSFEVESQRSIENLESVKIYPASEYSLTKKEIQAGMAKIRQDLDQNVEKFR 251 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 K+ + EA RL + L ++ S ++++Y Y + +L +Y E+ + Sbjct: 252 KDFKTEEANRLRVTVEEFLTNMDINPSQVAVDSYVNYFY-----DNLVSLLDYF-ENPIF 305 Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531 F+DE Q++ + A + G+ LP D W+ I+ Sbjct: 306 FIDEPKRVTEQLNVVDAEFGDSMANRLQKGYVLPGQTDVI------WD---KNQIIAKID 356 Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-----QVEDVYDEINLAAQQGLRIL 586 G E+ + Q I+ VD VE+ S + E + ++ +Q +L Sbjct: 357 SG----EKVLFTAIAQKIQGFS-VDDFVEVGSRNVSPYNGKFEILVQDLKKYKEQKYAVL 411 Query: 587 LTVLTK----RMAEDLTEY----LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 L +K R+AEDL E+ +E + + M EV ++ Sbjct: 412 LVTGSKTRGQRLAEDLREFEISAFFEEDGERQVMPGEVMIIK------------------ 453 Query: 639 INLLREGLDIPECGLVAILDADKEG 663 LR G P VAI D D G Sbjct: 454 -GQLRSGFMYPMIKFVAISDTDIFG 477 Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ + EI+ D G DVLV ++ GLDIP + I DA+K G Sbjct: 861 VAFAHGQMSERQLEEIMYDFVNGDIDVLVTTTIIETGLDIPNANTIIIHDAEKMGL---- 916 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 SQLYQLRGRVGRS 929 >gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter usitatus Ellin6076] gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter usitatus Ellin6076] Length = 1141 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 9/221 (4%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+T + K + ++ RP I++ A L FF + D Y Sbjct: 13 LSGLTTTAKALYAVLLWQSSGRPLIIVVDGNKQAEALAEAVNTFFS------LLVADDKY 66 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYS 291 P+ +P D + S + +I R SL + I + V S + I + Y Sbjct: 67 GPQ-LLPALDVLPMQALSPHAEICEQRAIGLWSLATKRSPITIMPVTSALLRIEPGDFYR 125 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 Q+ ++L++G+ + +E+++ L Y R++ + G + V G +++FP + R+ Sbjct: 126 QLALRLRVGEELPLEEVVAHLESIGYTRREPVEMVGEYSVRGGILDVFPPEAQKPV-RID 184 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 +FG+ +E I F + + + VE + + Y RP L Sbjct: 185 LFGDQVESIRRFDVESQRSVLKVEDCLLLPLTEYQKSRPFL 225 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%) Query: 133 NHSKDITF---FQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAK 187 N+S D + F+ ++ P+ DQ AI+++ + + S + + +LL G G GKT M Sbjct: 583 NYSSDSNWQREFEDAFEFSPTRDQLTAISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRA 642 Query: 188 VIEAMQ--RPAIVMAPNKILAAQLYSEFKNFF 217 +A+ + +V+AP +LA Q + FK F Sbjct: 643 AFKALGDGKQVVVLAPTTVLAFQHFETFKRRF 674 >gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1103 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 2/108 (1%) Query: 273 IVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 I++S + +C+ + +++ + + LK G++ L+ L + Y+R + +G F + Sbjct: 113 IIISGLQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAI 172 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G I+IFP D +R+ +G+DIE I F P+ + I+ VE I+I Sbjct: 173 RGGIIDIFPVASPD-PFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEI 219 >gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus ATCC 4796] gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus ATCC 4796] Length = 1165 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/310 (20%), Positives = 127/310 (40%), Gaps = 33/310 (10%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++I + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQIISKLNEPLILVEENENKAQNLYGELSAILDSEQVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCI-YGIG 285 D I +++++ D + R A LL + IV+++ + Y + Sbjct: 81 -----------SLDATIATQTAVSSP-DELSSRIQALSFLLSKKAGIVITTPQGLQYKLS 128 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 + ++Q E EL + LV Y+++ + G F + GD ++I+P E+ Sbjct: 129 NPTDFAQAKRVFIPEKEYELTELNNWLVHSGYQKEALVAKPGEFAIRGDILDIYPLDREN 188 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 R+ FG++I+ + EF T + + ++ ++I A V + A + I++++ Sbjct: 189 -PVRIEFFGDEIDTVKEFNLATQRSTQEIDLVEITAAQDRVFSSDAIKKAAEKIRKDMA- 246 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 + ++ T L+ L+T G Q+ YL E P +L +Y+ Sbjct: 247 --------DAPAPEKAVKDHFTVALDNLDTGGLPQNYSFLVDYLI-----EKPSSLLDYL 293 Query: 466 PEDSLLFVDE 475 + + +D+ Sbjct: 294 APNGQILIDD 303 >gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. JKD6009] gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TW20] gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp. aureus T0131] Length = 1168 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + NVE + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH130] gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948] gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30] gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765] gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 132] gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754] gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH130] gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948] gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30] gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765] gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754] gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus aureus subsp. aureus CGS01] gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA131] gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA177] gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21189] Length = 1168 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + NVE + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300] gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300] Length = 1168 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763] gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763] Length = 1168 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 1166 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/308 (17%), Positives = 134/308 (43%), Gaps = 27/308 (8%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G+T S K +++ + + + + N + A ++ + + +A Sbjct: 27 LIYGLTDSQKAHIAHYIVKKLNKKVLFITYNDVEAKLMHEDLSSLLNGDAY--------- 77 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 +P D K + + I + +A R +++ V+S+ + + + + Sbjct: 78 -----LIPSRDALFYKVDASSLDITGKKLAAIRRIIDDKPYAFVASIDGVLNKVAPKDVF 132 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + KIGD V+ E+ S V Y+R + +G F + G I+ F S +E+ +R+ Sbjct: 133 LKYKRNYKIGDKVDLNEISSFFVTMGYERVPMVEGKGQFSIRGGIIDFF-SPMEEEGFRI 191 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F ++I+ I F T + + NV+ ++++ ++ + + + ++ + ++ Sbjct: 192 ELFDDEIDSIRSFDTFTQRSLDNVDEVELFPAREFILEDENIKKGLSNLSSKVNSYISKI 251 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP--ED 468 KE + A++++++ E++E ++I N G G L+ + +D Sbjct: 252 -KETQSGRAEKIKKKFD---EIMENISETRNITN-----IGELIGFFYDNLYSIVDYFDD 302 Query: 469 SLLFVDES 476 + + VDE+ Sbjct: 303 AFIIVDEN 310 >gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH9] gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH1] gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781] gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719] gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224] gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937] gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819] gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796] gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH9] gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JH1] gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781] gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719] gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224] gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937] gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981] gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819] gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796] gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus CGS03] gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21172] Length = 1168 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299] gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299] Length = 1168 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus COL] gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus COL] gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. Newman] Length = 1168 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + NVE + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50] gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus N315] gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu3] gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117] gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus N315] gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu50] gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Mu3] gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117] Length = 1168 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1168 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + NVE + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae 2603V/R] gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae NEM316] gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae 2603V/R] gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316] gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1165 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 33/307 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +G+ K +A E + + +V+ + + +L S+ + + V Y Sbjct: 26 QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSDISSLIGEDNV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 ++ + VP + SS+++ I R+ SA R L E+N ++ S + + E Sbjct: 80 FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +S+ + +IG +L +LV Y++ G F GD ++IF ++ + Sbjct: 133 VFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG++I+ I +F T + ++ +E+++I + A K + Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EG L+ A +++ TY E+L TT + + R+L+ E + +YIPE Sbjct: 243 ----EGYLVTASEVQR--TYLSEVLSTTENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294 Query: 469 SLLFVDE 475 + LFVD+ Sbjct: 295 TPLFVDD 301 >gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM 14600] gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM 14600] Length = 1185 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/243 (21%), Positives = 112/243 (46%), Gaps = 12/243 (4%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295 Y P D + + + R R A +L + + ++V++ S + + + SY + I+ Sbjct: 82 YYPAKDLLFYQSDIRSNVLTRQRMQAVEALRGKEETVIVTTWSALMNKLPPLSSYDKNII 141 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV-AWRVSMFG 354 ++ GD + ++ +L+ Y+ G F V G I++FP L D R+ ++G Sbjct: 142 EVAQGDDMPVEKWRLALIGSGYEPVARVEHPGEFAVRGGIIDVFP--LTDANPIRIELWG 199 Query: 355 NDIEEISEFYPLTGQKIRN---VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 ++++ + F P + + + ++TI+I ++ V L ++ I+ + Sbjct: 200 DEVDTMRLFDPDSQLSLSDEDPLQTIRIVPSAEIVLSPEELRRGLEGIRADADRVCAGYR 259 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 + + EA R++ +E +E Q +E++ Y T + +L +YIPED ++ Sbjct: 260 ESFKTEEAARIKAAADQIIEDVEGGFGSQQVESHLTYFTDQTL-----SLIDYIPEDGVI 314 Query: 472 FVD 474 F+D Sbjct: 315 FLD 317 >gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius 653-L] gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius 653-L] Length = 1133 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 65/313 (20%), Positives = 134/313 (42%), Gaps = 54/313 (17%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + G+T +GK + + + R + +A + A + Y E + Sbjct: 30 ITGLTWAGKQNLAYSLFKDLSRQVLYVASTEYEAKKAYEELSVYLKDKV----------- 78 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-- 290 +Y+ + + + ++D R L+ ++ + V+SV + Y Sbjct: 79 ---SYLGSNEILFYNLDARDRKVDARRLKVFIKLINKDKSVFVTSVDAL-----TRKYMP 130 Query: 291 ----SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR----GTFRVCGDSIEIFPSH 342 + +LK+G + +EL LV Y+R +++ G F V G ++IF + Sbjct: 131 KKLITDNTFKLKVGRTQGIQELTQKLVDLGYQR----VVKVEGFGQFSVRGGIVDIF-TL 185 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 + D R+ F ++I+ I EF + + I +++ I + ++ P+ + A++ IK E Sbjct: 186 MYDFPLRIEFFDDEIDSIREFDVYSQKSIDKKKSVTITPSRDFIYPKD-VTGAIEKIKSE 244 Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462 ++ +L+ L +R+E R +D +ENY YL + +LF Sbjct: 245 IRDD-TDLDVHKNL---ERIENREYFD-----------GLENYIDYLYD----DQDKSLF 285 Query: 463 EYIPEDSLLFVDE 475 EY+ +D+L++VD+ Sbjct: 286 EYLAKDALIYVDD 298 >gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC 25644] gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC 25644] Length = 1179 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/308 (19%), Positives = 131/308 (42%), Gaps = 26/308 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 ++ GV+GS +T +A + E Q P IV+ + A L + N F ++ F Sbjct: 26 HMITGVSGSVRTLLLADLEEKFQVPLIVVCDDLFHAQSLEEDLTNVFAEEDIDLF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 P + + S+ + + R + + + + IVV+SVS I + + + Sbjct: 81 --------PVEENFAAAISASSPEYKAQRVKTLQKMADGSSKIVVTSVSGIRRMLCPKDF 132 Query: 291 -SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + ++ K+G+ + ++L L Y+ + G F V G +I+ +LE+ R Sbjct: 133 WLKSTIKFKLGEEIIPEKLKQELCTMGYRAVKMVERPGDFAVRGSIFDIYALNLENPV-R 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +I+ + F + ++ ++ ++I + ++ L +++ +K L + Sbjct: 192 IDLFDTEIDSLRLFDSADQRSLKKIDEVEILPATDFIASDSMLEKGAAVLQKNVKDYLAK 251 Query: 410 L--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 L E++ +LL + +LE S E Y G+ +LF+Y+ E Sbjct: 252 LDDEEDKKLLADNLRTVADDWHRGILEPEHVVFSEELY---------GKSKTSLFDYLSE 302 Query: 468 DSLLFVDE 475 ++ D+ Sbjct: 303 SGMIVFDD 310 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ Y+H ++ + +I+ D G++DVLV ++ G+DIP + + DAD+ G Sbjct: 858 RIAYVHGQMSETQMEKILADFIAGEYDVLVTTTIIETGVDIPNVNTLFVEDADRMGL--- 914 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 915 -AQLYQLRGRVGRS 927 >gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC 27029] gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC 27029] Length = 1218 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP + + A L S + P V F S+ + E PR+DT + + + Sbjct: 59 RPVLAVTATTREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAVLR- 116 Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306 R+ H R +VV+ V + G+G +E VQL GD + + Sbjct: 117 ---RLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VQLAAGDEADLE 168 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 E+ L Y R D+ RG F V G +++FP E + RV +G+++EEI F Sbjct: 169 EVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 224 >gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5] gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5] Length = 1218 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP + + A L S + P V F S+ + E PR+DT + + + Sbjct: 59 RPVLAVTATTREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAVLR- 116 Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306 R+ H R +VV+ V + G+G +E VQL GD + + Sbjct: 117 ---RLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VQLAAGDEADLE 168 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 E+ L Y R D+ RG F V G +++FP E + RV +G+++EEI F Sbjct: 169 EVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 224 >gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1170 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 70/319 (21%), Positives = 135/319 (42%), Gaps = 28/319 (8%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 Q L + +E V L+ G++G+ K +A+ ++ +V+ N A +L S+ F Sbjct: 16 QELNEVFGKENV-LVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQFVE 74 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVS 276 + + Y Y P D E+ S+ + Q +R+R + ER +V Sbjct: 75 DSEI------YKY-------PMQDIMTEEFSTQSPQFMSERVRTLTALAQEERG-LFIVP 120 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 + V+ + + L +GD ++ E L+ LV Y+R+ + G F + G + Sbjct: 121 LNGLKKWLTPVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIV 180 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 +I+P L R+ F +++ I +F + + N+E + I S Y+ L Sbjct: 181 DIYP--LIGKPVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTK 238 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 +K+ + ++EK R + E ++ EM + Q + ++ E Sbjct: 239 HKLKQAYEDTRPKIEKSVRNELKETYESFQLFEAEMFD----HQVLRRLVAFMY-----E 289 Query: 457 PPPTLFEYIPEDSLLFVDE 475 P T+ +Y ED+++ VDE Sbjct: 290 QPATIMDYFKEDAIIAVDE 308 >gi|171473669|ref|YP_001798539.1| putative helicase [Acidianus filamentous virus 9] gi|170779999|gb|ACB37255.1| putative helicase [Acidianus filamentous virus 9] Length = 561 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V R AE L++ E I ++ S+ ERI+ I L+ GK VL+ +L EG Sbjct: 430 LVIVRRIRHAELLSKMFDESGINADWVSSKTNLEERIQKIEALKNGKLQVLISTSLADEG 489 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LDIP LV +L K S+ LIQ IGR R Sbjct: 490 LDIPNLRLVVLLSQGK-----SRIKLIQRIGRVMR 519 >gi|21221313|ref|NP_627092.1| helicase [Streptomyces coelicolor A3(2)] gi|6689196|emb|CAB65593.1| putative helicase [Streptomyces coelicolor A3(2)] Length = 945 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ V D+I+ +R L +TK A + +Y + + S+ + R + Sbjct: 443 ARIIVKQVRDKISDPG--AMRALGFCVTKAHAHFMADYFRRAGFQAAALDSDSSSEVRAQ 500 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 +RDL+ GK V+ ++L EGLDIP+ + +L S T +Q +GR R + Sbjct: 501 ALRDLQDGKLQVIFSVDLFNEGLDIPDVDTLLLLRPTN-----SATVFLQQLGRGLRRTD 555 Query: 684 SKVIL 688 +K +L Sbjct: 556 TKPVL 560 >gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes HL050PA2] Length = 1208 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + ++V Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G + V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELTTELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH 391-98] Length = 1176 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/320 (18%), Positives = 148/320 (46%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 + ++ G+ K QL+ G+ S ++ MA + + ++ +V+ N A ++Y + + Sbjct: 14 VQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLYQAQKIYEDLVSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V + P + + + ++ R L + I+V+ Sbjct: 74 LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120 Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + E + Q +++ +G V+ LL +L Y+R+ + G F + G Sbjct: 121 PVAGLRRFLPMKELWKQKQIEINLGQEVDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 ++I+P E++ +R+ F +++ I F + E++K + +V L Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVEEQRSQDKRESVKFGPATEFVFSPEELRVG 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 ++++++ L M+ ++ + ++ A + + +++++E+L+ + Q+IE +YL+ Sbjct: 240 IEHLEKGL-MKTMQKLSDDKIKTA--VLETVSHEIELLK---NGQNIEQMFKYLSIFY-- 291 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 + P +L +Y+PE+ ++ +DE Sbjct: 292 KEPASLIDYLPENGVVILDE 311 Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G++DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|76797974|ref|ZP_00780233.1| transcription-repair coupling factor [Streptococcus agalactiae 18RS21] gi|76586654|gb|EAO63153.1| transcription-repair coupling factor [Streptococcus agalactiae 18RS21] Length = 451 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 33/307 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +G+ K +A E + + +V+ + + +L S+ + + V Y Sbjct: 26 QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSDISSLIGEDNV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 ++ + VP + SS+++ I R+ SA R L E+N ++ S + + E Sbjct: 80 FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +S+ + +IG +L +LV Y++ G F GD ++IF ++ + Sbjct: 133 VFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG++I+ I +F T + ++ +E+++I + A K + Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EG L+ A +++ TY E+L TT + + R+L+ E + +YIPE Sbjct: 243 ----EGYLVTASEVQR--TYLSEVLSTTENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294 Query: 469 SLLFVDE 475 + LFVD+ Sbjct: 295 TPLFVDD 301 >gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469] Length = 1147 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 123/305 (40%), Gaps = 41/305 (13%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 L ++ S + +A + RP +++ + A + + ++AV + + DY Sbjct: 31 LSLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAAWLGNDAVLRYPNRKDY-- 88 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQ 292 P +D ++ ++ I R A L IVV+S + + V S Sbjct: 89 -----PWSD------ATPDDAIIGARCRAIAKLSAGEKVIVVASAHALMRRVPPVGSGYF 137 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAWRV 350 + +GD V +++ S LV Y D G + GTF + GD+++IFP+ R+ Sbjct: 138 LPATFTVGDDVPFEDVASLLVGMGYA--DTGEVDAPGTFHIHGDTVDIFPAQATS-PVRI 194 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++I+ I TGQ I ++ + + + + KE ++ Sbjct: 195 EFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARE-----------LAFTKEAIR------ 237 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 E L + I DLE+++ ++E Y L G G P E+I ++L Sbjct: 238 RAEEALYTRAQENSAIAADLELIQRGAQAPALERYLPVLYG---GTASP--LEHISSETL 292 Query: 471 LFVDE 475 + + E Sbjct: 293 VVLAE 297 >gi|223039442|ref|ZP_03609730.1| ATP-dependent DNA helicase RecG [Campylobacter rectus RM3267] gi|222879238|gb|EEF14331.1| ATP-dependent DNA helicase RecG [Campylobacter rectus RM3267] Length = 780 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKI 204 + P+ DQ AIA L E V+ +++G GSGKT M A + RPA++MAP I Sbjct: 225 FAPTDDQLNAIADLRSDFGGEEAVRRVVMGDVGSGKTLVMLAAALSVYPRPALIMAPTSI 284 Query: 205 LAAQLYSEFKNFFP 218 LA Q+Y+E P Sbjct: 285 LAEQIYAEAVRLLP 298 >gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139] gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139] Length = 1209 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + ++V Y+ S+ + E PRTDT + + ++ ++ Sbjct: 82 AEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 140 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G + V+L +G+ + EL + LV Y R Sbjct: 141 VAPVRSLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELTTELVNAAYSR 185 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 186 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 228 >gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum WM1] gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum WM1] Length = 1179 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 116/248 (46%), Gaps = 9/248 (3%) Query: 231 YYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVE 288 +++P+ ++ P D + + R + R L+E+ VV++ + + ++ Sbjct: 72 FFEPDVWLYPARDLLFFSADIHGNLLTKQRMTVFRQLMEKTSGWVVTTFDGLMDHLLPLK 131 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + ++ ++ G +++ +E L++ Y+R G F + G I++FP E++ Sbjct: 132 YLKEQVLSVEGGQTIDVEEWKKRLIELGYERMGQVDGMGQFSIRGGIIDVFPL-TEELPV 190 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ ++ ++++ I F + + I +E+I+IY + + ++ +++E K Sbjct: 191 RIELWDDEVDSIRTFDIESQRSIEQLESIRIYPATEMALTGAQIEEGIRVLEKEAKKYEK 250 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI-PE 467 +L + ++ E+ R+ ++ LE L+ ++ Y Y + + EY E Sbjct: 251 DLRAQSKIQESSRIRSIVSEFLEGLKDGFRQHGLDGYIHYFC-----QESVSFLEYFHGE 305 Query: 468 DSLLFVDE 475 +S++F+DE Sbjct: 306 NSVVFLDE 313 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ E I+ D G+ DVLV ++ GLDIP + I DAD G Sbjct: 868 VTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADHMGL---- 923 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + K +L +E +R Sbjct: 924 SQLYQLRGRVGRSSRTS---YAFLMYKRDKLLKEEAEKR 959 >gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA3] gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes HL110PA4] Length = 1208 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259 A + + K + ++V Y+ S+ + E PRTDT + + ++ ++ Sbjct: 81 AEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + RSLL+ + G+G + V+L +G+ + EL + LV Y R Sbjct: 140 VAPVRSLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELTTELVNAAYSR 184 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|166714776|gb|ABY88100.1| UvrB [Stenotrophomonas sp. ICB129] gi|166714780|gb|ABY88102.1| UvrB [Stenotrophomonas sp. ICB141] Length = 60 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 36/54 (66%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ IRN++ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRIELFDGEVEKITMFDPLTGETIRNMQRFTVYPKTHYATTR 55 >gi|166714790|gb|ABY88107.1| UvrB [Stenotrophomonas sp. ICB133] Length = 60 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 38/60 (63%) Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446 T R + A++ IK ELK L +L E +L+EAQRL QR +D+EM+ G C IENYS Sbjct: 1 TTRERVLAAVETIKVELKEPLEQLYAENKLVEAQRLAQRTQFDIEMMAEVGFCNGIENYS 60 >gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4] gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4] Length = 1159 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 16/232 (6%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I QL+ + + E + G+ GS + +++++ +++ +++ + A +L E + + Sbjct: 9 INQLVSALSTAEASISIAGLKGSAPAYVLSRLLVGVKKNFLIITSDAESAEELCRELRFY 68 Query: 217 FP-HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIV 274 +AV YF P DT + +S + I R + L++ R D +V Sbjct: 69 SGREDAVLYF-------------PPWDTAPFESASPHADITGQRLNVLFRLMDGRADAVV 115 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 S + + + ++ ++ + G+ V +++LL LVK Y + RG F + G Sbjct: 116 TSLPAVMQKLLPRKTLGEISQYIVAGEEVAREKLLEKLVKLGYSHVPLVEDRGGFSIRGG 175 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 ++IFP L R+ FG+ ++ I F P T + ++ +E + + + V Sbjct: 176 ILDIFPPDL-PAPVRIEFFGDFVDTIRTFDPATQRSLQPLEELVLLPSREVV 226 >gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM 20547] gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM 20547] Length = 1244 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 27/190 (14%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A L + ++ P +V F S+ + E PR+DT + +++ +R A Sbjct: 112 AEDLAASLRSLLPPQSVAVFPSW-ETLPHERLSPRSDT-------VGQRLAVLRRLAHPG 163 Query: 266 LLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318 + + +VVS+V + G+G + + V ++ G++ + +E + +LV Y Sbjct: 164 QADHDGPLRVVVSAVRSLLQPLPAGLGDL-----VPVSVQAGETRDPEEFIEALVAAAYA 218 Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 R D+ RG F V G +++FP ED RV +G+++EE+ F ++ + +++ Sbjct: 219 RTDLVEKRGEFAVRGGIVDVFPP-TEDHPLRVEFWGDEVEEVRWF------RVADQRSLE 271 Query: 379 IYANSHYVTP 388 I + P Sbjct: 272 IAPGGLWAPP 281 >gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED98] gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MR1] gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED98] Length = 1168 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----EIPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3] gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3] gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1] Length = 1161 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 32/281 (11%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 I++ N+ A +L P V+YF V T +S +E Sbjct: 51 IIIEENENKAQRLVDNLAPILPEEKVQYFA-----------VDSTLATQRATASPDELAQ 99 Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R++ A LL + IVV++ + Y + +SY + +K+G + KEL LV Sbjct: 100 RIK--ALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVAS 157 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA-WRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y+++ + G F V GD ++I+P L+ V+ R+ FG++++ I F T + I Sbjct: 158 GYRKEALVAKPGEFAVRGDILDIYP--LDQVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 E I + + L A IK+E+K E+ E LE+L+ Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNFLEVLD 262 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 +NY+ + P +L Y+PE+ L+ ++ Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFND 301 >gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes HL001PA1] gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes HL082PA2] gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes HL060PA1] gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes HL103PA1] Length = 1208 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 23/159 (14%) Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMRHSATR 264 + K + ++V Y+ S+ + E PRTDT + + ++ ++ + R Sbjct: 86 ATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVVVAPVR 144 Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 SLL+ + G+G + V+L +G+ + EL + LV Y R D+ Sbjct: 145 SLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELATELVNAAYSRVDMVE 189 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 RG F V G +++FP LE R+ FG++IEE++ F Sbjct: 190 RRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227 >gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii SJ-7A-US] gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii SJ-7A-US] Length = 1161 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 32/281 (11%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 I++ N+ A +L P V+YF V T +S +E Sbjct: 51 IIIEENENKAQRLVDNLAPILPEEKVQYFA-----------VDSTLATQRATASPDELAQ 99 Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R++ A LL + IVV++ + Y + +SY + +K+G + KEL LV Sbjct: 100 RIK--ALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVAS 157 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA-WRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y+++ + G F V GD ++I+P L+ V+ R+ FG++++ I F T + I Sbjct: 158 GYRKEALVAKPGEFAVRGDILDIYP--LDQVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434 E I + + L A IK+E+K E+ E LE+L+ Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNFLEVLD 262 Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 +NY+ + P +L Y+PE+ L+ ++ Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFND 301 >gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MW2] gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH70] gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MW2] gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH70] Length = 1168 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F I+ I +F T + NVE + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTKIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ EY Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3] gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3] Length = 799 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 19/162 (11%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLGKFD 634 G R+++ + AE LTE+L E R++ S + E+ E++ D R G+F+ Sbjct: 371 GRRVIVFTEYRDTAETLTEFLGEHVDTRRFVGQGDKEGSSGMTQKEQKEVLDDFRKGEFE 430 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693 VLV ++ EGLD+PE LV + + + IQ GR R + V+L A+ Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRAIQRKGRTGRQDEGQVVVLLAEDT 485 Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 I +RRREK++E + + V ++ E +DP Sbjct: 486 RDEAYFWI---SRRREKEMESELR---KLKGVASEVEEQLDP 521 >gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC 13813] Length = 1165 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 33/307 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +G+ K +A E + + +V+ + + +L S+ + + V Y Sbjct: 26 QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 ++ + VP + SS+++ I R+ SA R L E+N ++ S + + E Sbjct: 80 FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +S+ + +IG +L +LV Y++ G F GD ++IF ++ + Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG++I+ I +F T + ++ +E+++I + A K + Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EG L+ A EQR Y E+L TT + N R+L+ E + +YIPE Sbjct: 243 ----EGYLVTASE-EQR-AYLSEVLSTTENHFKHSNIRRFLSIFY--EKEWGILDYIPEG 294 Query: 469 SLLFVDE 475 + LFVD+ Sbjct: 295 TPLFVDD 301 >gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4] Length = 1138 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 259 RHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R A L CIVV+S S + + S L + D + ++ +L+ Y Sbjct: 103 RTKALHMLAAGTPCIVVASARSLLRRLPPTTSAHTSPFVLALADERQPSDVARTLLAMGY 162 Query: 318 KRQDIGIIR-----GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 +R I R G F + GD ++IF S E R+ FGN+I+ I F P TGQ I Sbjct: 163 ER--IATPRDLTQPGMFCLQGDRLDIF-SATEQTCVRIEFFGNEIDSIRSFLPATGQTIA 219 Query: 373 NVETIKIYA 381 +ET++++A Sbjct: 220 PLETLEVFA 228 >gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes HL037PA2] gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes HL037PA3] gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08] Length = 1194 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 40/206 (19%) Query: 181 KTFTMAKVIEAMQRPAIVMAPNKIL-----------------AAQLYSEFKNFFPHNAVE 223 +T T+ + A RPA+V ++ L A + + + + +AV Sbjct: 28 RTPTLDLQVTASARPAVVAVLSRSLDGSRRLPVLLVTSTFREAEESVATLETWLGGDAVC 87 Query: 224 YFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 Y+ S+ + E PRTDT + + ++ ++ + RSLL+ Sbjct: 88 YYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVVVAPVRSLLQPQ------- 139 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + G+G ++ V L +G+ + EL + L+ Y R D+ RG F V G ++ Sbjct: 140 ---VAGLGRIKP-----VHLAVGEEHDLTELATELINAAYSRVDMVERRGEFAVRGGIVD 191 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEF 363 +FP LE R+ FG+ IEE++ F Sbjct: 192 VFPPVLEHPV-RIDFFGDKIEEMTSF 216 >gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase [Idiomarina baltica OS145] gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase [Idiomarina baltica OS145] Length = 1159 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 60/322 (18%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS-YYDYYQP 234 + GS +AKVI+ +V+ + A +L E V YF + DY+ Sbjct: 24 LNGSSPALALAKVIDRTPGRVLVVTADANQAHRLEQE---------VRYFAGEHTDYHDD 74 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQM 293 P +T S ++ I R S L + R ++VS + + I VE Sbjct: 75 ITVFPDWETLPYDTFSPHQDIISERLSVLARLPQARRGALIVSLNTLLQRIAPVEFVQSQ 134 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 + L + ++ L L + Y+ + + G F G +++FP +R+ F Sbjct: 135 SLNLTVNQQLDALALREQLERNGYRAVEQVMEHGEFSSRGSILDLFPMG-STTPYRIDFF 193 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 N+I+ I F P T + + VE++K+ + P +++ + + R Sbjct: 194 DNEIDSIRPFDPETQRSLTPVESVKLLPAHEF----PLTKAGIEHFRSAFRERF------ 243 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG----------EPPPTLFE 463 I+++ E L Y + G+ PG E TLF+ Sbjct: 244 -----------EISHERESL-----------YQQVSKGQTPGGIEYYLPLFFEQTATLFD 281 Query: 464 YIPEDSLLFVDESHVTIPQISG 485 Y+P D+LL VT I G Sbjct: 282 YLPNDALL------VTFGDIQG 297 >gi|118474124|ref|YP_891808.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus 82-40] gi|261886450|ref|ZP_06010489.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413350|gb|ABK81770.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus 82-40] Length = 602 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKI 204 + P+ DQ AAI + I + +++G GSGKT M A + +PA++MAP I Sbjct: 224 FKPTNDQLAAIKDIKNDISQNIAAKRVIMGDVGSGKTLVMLAAALMIYPKPAVLMAPTSI 283 Query: 205 LAAQLYSEFKNFFP 218 LA QLYSE K P Sbjct: 284 LADQLYSEAKRLLP 297 >gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424] gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424] Length = 1185 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 114/258 (44%), Gaps = 25/258 (9%) Query: 243 TYIEKESSINEQIDRM-RHSATRSLLERNDCIV----VSSVSCIYGIGSVESYSQM---- 293 T +EKE+ I +ID + RH+A + L +N V VS V I I SY + Sbjct: 64 TTLEKETYIYPEIDILKRHTAKSNDLVQNSIKVLENLVSKVPSIIIIPIEASYRTLKDPE 123 Query: 294 -----IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++ + + ++L LV Y R D + G F G ++IF S L + Sbjct: 124 KFLNTTFEINLDTVINFEDLQKKLVNMGYNRVDSVDVVGEFSKRGSIVDIF-SPLNEKPI 182 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ F ++++ I F +T + + VE + +Y + + + + I E LK + Sbjct: 183 RLDFFDDELDSIRTFDEITQKSLEKVENVTVYPTNDFFLTNEEKDIVVTKILERLKDEKL 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 + E+ + + + L+++I E+ TG +E++S + E ++ +Y ED Sbjct: 243 KQEENYKDI-SDYLQEKI----EIYRATGDFSELESFSNLIY-----EHTFSIADYFTED 292 Query: 469 SLLFVDESHVTIPQISGM 486 ++F D H ++ + Sbjct: 293 VVIFFDNYHKITEKVESL 310 >gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides ATCC 33313] gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides ATCC 33313] Length = 1166 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/362 (20%), Positives = 149/362 (41%), Gaps = 34/362 (9%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q A+ +L G+ ++ L+ G++G+ +T +A + + Q+P ++++ ++ A QL + Sbjct: 9 QDKALQELATGL-TKGGRHLMTGISGTARTVYLAALQQRTQQPMVIVSDSQFHADQLAED 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F + + E V DT + R SA LL Sbjct: 68 LQALLGNEHVAVFPAE-ESLAAEMAVTSLDTRLA------------RVSALHLLLTDPQA 114 Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV+ ++ + V+ + Q + + E K+L L + Y R G F + Sbjct: 115 VVVTGIAGAQRYLPPVKKFQQAQLTIDFDHEYELKDLEIKLHQMGYHRNTTVEQPGEFAI 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G ++++P D R+ F +++ + F + I+N++++ I + V Sbjct: 175 RGSIVDVYPLD-ADYPVRLDFFDTELDSMRSFDAENQRSIKNIDSLTILPAADLVLSDDD 233 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 A K +L++ + + + E + L + IT +L T Q + YL Sbjct: 234 RQKA----KTQLELAMTKQRDQLAGAEKRHLTEAIT---PLLTTLADGQILPEMRAYLHM 286 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA---------TLAEYGF 502 P +LF+Y+P + ++ D+ I + M D + A T A++G+ Sbjct: 287 LYPD--AASLFDYLPVNGIVVFDDYPRAIENAAQMRLDDTNWWAEKLDKQQVLTTADFGW 344 Query: 503 RL 504 L Sbjct: 345 SL 346 Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V Y+H ++ + I+ D G++DVLV ++ G+DIP + + +AD G Sbjct: 856 QVAYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNANTLFVENADYMGL--- 912 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSI 697 L Q GR R+ N + T+S+ Sbjct: 913 -AQLYQLRGRVGRSNNVAYAYFTYPGTRSL 941 >gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus D139] gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus D139] Length = 1168 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans SSM1] gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans SSM1] Length = 1111 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 117/283 (41%), Gaps = 28/283 (9%) Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 GS K+F + +++ Q ++++ N+ ++ E F P + F Y + Sbjct: 11 GSSKSFLLRMLLKESQNSSLIICENRNEMEKVVQELNFFLPDTEILSFPEY-------TH 63 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIV 295 P + IE I R ++ + L+ ND +V + S + I S + I Sbjct: 64 EPFDEVKIES------NILSERVTSLKKLITDNDQKVVVGTFYSILKKIFSKSDFKNSIY 117 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 LK+GDS+ EL L Y + +G F GD EIF E R F + Sbjct: 118 SLKVGDSISFDELRYILGYLGYVEVEYVGDKGEFIQRGDFFEIFLIDKE-YPVRCEFFDD 176 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE-LKMRLIELEKEG 414 ++E I F P+T +K+++V+ I I + + L +K IK+E ++ R+ E K Sbjct: 177 ELEAIYYFDPVTIKKVKDVDAIDILPANEILCDEEDL---IKNIKDETVRERIKEFGKFA 233 Query: 415 RLLEAQRLEQRITYDLEMLETT--------GSCQSIENYSRYL 449 + Q++T E L G IENY YL Sbjct: 234 GVHWYAPYVQKLTPFWEYLGEVESVYFLGDGFQNKIENYFDYL 276 >gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1] gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1] Length = 1165 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 33/307 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +G+ K +A E + + +V+ + + +L S+ + + V Y Sbjct: 26 QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 ++ + VP + SS+++ I R+ SA R L E+N ++ S + + E Sbjct: 80 FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +S+ + +IG +L +LV Y++ G F GD ++IF ++ + Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG++I+ I +F T + ++ +E+++I + A K + Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EG L+ A EQR Y E+L TT + N R+L+ E + +YIPE Sbjct: 243 ----EGYLVTASE-EQR-AYLSEVLSTTENHFKHSNIRRFLSIFY--EKEWGILDYIPEG 294 Query: 469 SLLFVDE 475 + LFVD+ Sbjct: 295 TPLFVDD 301 >gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243] gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243] Length = 1161 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 27/220 (12%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 LGV S + F +A +P +V+ + A + V F DY Sbjct: 31 LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292 +VP+ S Q+ R R A +L + +VV+S + + + S Sbjct: 89 --PFVPK--------PSDPAQVAR-RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137 Query: 293 MIVQLKIGDSV------------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 + V L G + E ++ +L ++ Y+ GTF V G +I++FP Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +L R+ FG+++EEI P TGQ I+ + + IY Sbjct: 198 GNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIY 236 >gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307] gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307] Length = 1183 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 29/180 (16%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L+ G S++ +EL ++L + Y+R G++ GD +++FP E + R+ FG D Sbjct: 146 LRKGASIDLEELAANLARLGYERVSTIEQEGSWSRRGDIVDLFPVSAE-LPVRLEFFGED 204 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY-IKEELKMRLIELEKEGR 415 +E++ EF P T + + V+ ++I + P + A++ + ++L + Sbjct: 205 LEKLREFDPATQRSLDAVDLVRITPTGY----GPLVADALRANLPDQLD----------Q 250 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 LL A+ +EQ + D R L G + P +L +Y+PE +LL +DE Sbjct: 251 LLNAEAMEQLLAGD------------TPEGMRRLMGLA-WQQPSSLLDYLPEHTLLVLDE 297 >gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1] gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1] Length = 1161 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 27/220 (12%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 LGV S + F +A +P +V+ + A + V F DY Sbjct: 31 LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292 +VP+ S Q+ R R A +L + +VV+S + + + S Sbjct: 89 --PFVPK--------PSDPAQVAR-RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137 Query: 293 MIVQLKIGDSV------------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 + V L G + E ++ +L ++ Y+ GTF V G +I++FP Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 +L R+ FG+++EEI P TGQ I+ + + IY Sbjct: 198 GNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIY 236 >gi|166714788|gb|ABY88106.1| UvrB [Stenotrophomonas sp. ICB128] Length = 61 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRIELFDGEVEKITMFDPLTGETLRNMQRFTVYPKTHYATTR 55 >gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM 17241] gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM 17241] Length = 1157 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 22/181 (12%) Query: 300 GDSVEQKELLSSLVKQQYKRQD--IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 G + KEL++ LV Y R D G+ + + R G ++ P H+ D +R+ +G++I Sbjct: 145 GGQYDIKELIAFLVAAGYTRCDQVDGVCQFSQR--GGILDFSPPHMPD-PFRIEFWGDEI 201 Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG-RL 416 + IS F T +++ V+ + I + V P + +K L+E +G R Sbjct: 202 DTISTFKTDTQRRVDTVKRVDITPAAEVVADSPA-----RLVK------LLESAAKGLRG 250 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476 + +R ++++ ++E +E QS++ + L P TLF+Y+P+ +L D + Sbjct: 251 TQGKRAKEKLAQEIEQIENGVLPQSLDRWMPLLY-----PEPATLFDYMPKAALFLCDTA 305 Query: 477 H 477 + Sbjct: 306 N 306 >gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase) [Dehalococcoides sp. VS] gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase) [Dehalococcoides sp. VS] Length = 1154 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 20/215 (9%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 + V +G+ F++A V ++ P +V+ A +L + ++ Y + Sbjct: 36 ISVLDAGRGFSLASVYRRLKCPMLVITSQPERARELLEQ-------------IAAYTGEE 82 Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCIYG-IGSVE 288 P ++P Y S N +++MR + R + I+V++V + S E Sbjct: 83 P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGYIRSGDSRIIVTAVPALLQRYVSPE 141 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + Q +Q+ G +E ++L+S + Y+++ I I GT+ G ++IFP H ED Sbjct: 142 IFKQSFIQVWAGLEIEPQDLISRFQQLGYRQESIVEIPGTYSHRGGILDIFP-HTEDNPV 200 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 R+ FGN +E + F P + + + V + I S Sbjct: 201 RLEFFGNTLESLRNFDPKSQRSGKAVNELTISPAS 235 >gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus parasanguinis F0405] gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus parasanguinis F0405] Length = 764 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/317 (21%), Positives = 150/317 (47%), Gaps = 35/317 (11%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L+LG++ + K MA +++++ A+++ + A +L S+F + V F+ Sbjct: 26 ELILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASDFIALLGEDKVHTFLG--- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCI-YGIGSVE 288 D + + +++ R A L +++ I+V++VS I + S + Sbjct: 82 ----------DDNPLAEFVFASQERKFARLEALNFLCQKDRQGILVTNVSGIKLLLPSPK 131 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVA 347 ++ I QLK+G ++ L +L K Y++ + +G F + GD ++IF L+ Sbjct: 132 VFASSIFQLKVGQEIDLTTLSETLQKIGYQKVSQVLQQGEFSLRGDILDIFEIDQLQ--P 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 +R+ FG++I+ I F P + + + NVE +++ A S + ++EE +R Sbjct: 190 YRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVSDLL------------LQEEDFIRG 237 Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 + ++ + A E+ +Y E+L + + ++++ E TLF+Y+P+ Sbjct: 238 QQQIEQLQEQSAN--EEFKSYLAEILGDISQRKLYPDLRKFISFFY--EKQYTLFDYLPK 293 Query: 468 DSLLFVDESHVTIPQIS 484 + +F+D+ QI+ Sbjct: 294 HTPVFLDDYQKIADQIA 310 Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196 F+ Y + DQ +I ++ K + S R +LL+G G GKT M +A+ + Sbjct: 604 FEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQV 663 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223 V+ P +LA Q Y+ FK F AVE Sbjct: 664 AVLVPTTVLAQQHYANFKERFESFAVE 690 >gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus XylebKG-1] gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus XylebKG-1] Length = 1177 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 24/239 (10%) Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A+A+ +K + + L+G G+ + F +A + R + + A L + + Sbjct: 15 ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 73 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 P + + + S+ + E PR+DT + + + R+ H +V Sbjct: 74 TLLPPDTIAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRADDPETGPVSVV 128 Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 V+ + + G+G +E V L G S + E++ +L Y R ++ RG F Sbjct: 129 VAPIRSVLQPQVKGLGELEP-----VALAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 183 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ RV +G+++EEI F KI + ++++ A+ + P Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 235 >gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris StLB046] Length = 1170 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 L+ G+TGS + + + + + +M+ N + A +L + V Y Sbjct: 29 HLITGLTGSARPALIHTIYQETNKSIYIMSSNLLQAQKLVDDLTALVGDGHVHY------ 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 Y E ++ T + + ++ R + L+ + I + V+ + + + + Sbjct: 83 -YPAEEFIAANMT------TSSHELRAQRIATLGRLVNQERGIYIIPVAGMRSMLNAPQK 135 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +G V+ L LV+ Y R ++ G F + G ++I+P + +D R Sbjct: 136 WLGYELSTSLGQDVDINTWLDKLVEMGYTRSEMVTTPGEFAMRGGILDIYPPYAQD-PIR 194 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLI 408 + +F +++ I F + I ++ IKI+ A +T + A E L+ L Sbjct: 195 IELFDTEVDSIRTFSADNQRSIEKLKEIKIFPATELLLTKEERIKLA-----ERLEASLA 249 Query: 409 ELEKEGRLLEAQR-LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 K+ R E Q L Q I +D+E+L I Y L + P L +Y E Sbjct: 250 VSLKKVRKQETQELLMQNIQHDIELLRLGHLPDHIAKYGSLLF-----DQPYFLGDYFKE 304 Query: 468 DSLLFVDE 475 D L+ DE Sbjct: 305 DGLVLFDE 312 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV + H ++ + +I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 855 DARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHDADRMGL- 913 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 914 ---SQLYQLRGRVGR---SNRIAYA 932 >gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4] gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4] Length = 2403 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 15/122 (12%) Query: 580 QQGLRILLTVLTKRMAEDLT---------EYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 Q+ LRIL+ V T+ A +LT EYL+ + + + + ++ IIR R Sbjct: 640 QKDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRD 699 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILY 689 GK ++V N+L EG+D+ +C +V D + S SLIQ GRA ++N + +I+Y Sbjct: 700 GKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIIIY 754 Query: 690 AD 691 D Sbjct: 755 ND 756 >gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4] gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4] Length = 1123 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 18/212 (8%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPA-IVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 K Q + G++G+ +F +A + PA +V+ P++ A L +E K + E FV Sbjct: 25 KPQAVYGLSGTALSFLLAATFR--EWPAGMVIVPDEETALTLAAELKLLW---GEEVFV- 78 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 ++PR + + S + + R R + +L R +V ++ + + G+ Sbjct: 79 ---------FLPR-EIFGLGPSLPSAFVPRQRLLSLAALARRQGVVVATAPALLQGLAPP 128 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 E++S +L G+ + +EL LV+ Y R + G F G ++ FP + Sbjct: 129 ENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGGIVDFFPPS-SPLP 187 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RV G++I I+ F P + + +E +K+ Sbjct: 188 VRVEFDGDEIARIATFDPASQRSQTRLEAVKV 219 >gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 15998] gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 15998] Length = 1184 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 24/239 (10%) Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A+A+ +K + + L+G G+ + F +A + R + + A L + + Sbjct: 22 ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 80 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 P + V + S+ + E PR+DT + + + R+ H +V Sbjct: 81 TLLPPDTVAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPREDDPETGPVSVV 135 Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 V+ + + G+G +E V L G S + E++ +L Y R ++ RG F Sbjct: 136 VAPIRSVLQPQVKGLGDLEP-----VSLAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 190 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ RV +G+++EEI F KI + ++++ A+ + P Sbjct: 191 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 242 >gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum] Length = 1964 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 15/122 (12%) Query: 580 QQGLRILLTVLTKRMAEDLT---------EYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 Q+ LRIL+ V T+ A +LT EYL+ + + + + ++ IIR R Sbjct: 197 QKDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRD 256 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILY 689 GK ++V N+L EG+D+ +C +V D + S SLIQ GRA ++N + +I+Y Sbjct: 257 GKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIIIY 311 Query: 690 AD 691 D Sbjct: 312 ND 313 >gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1177 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 24/239 (10%) Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A+A+ +K + + L+G G+ + F +A + R + + A L + + Sbjct: 15 ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 73 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 P + + + S+ + E PR+DT + + + R+ H +V Sbjct: 74 TLLPPDTIAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRADDPETGPVSVV 128 Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 V+ + + G+G +E V L G S + E++ +L Y R ++ RG F Sbjct: 129 VAPIRSVLQPQVKGLGELEP-----VALAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 183 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ RV +G+++EEI F KI + ++++ A+ + P Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 235 >gi|153864551|ref|ZP_01997419.1| hypothetical protein BGS_1255 [Beggiatoa sp. SS] gi|152145954|gb|EDN72581.1| hypothetical protein BGS_1255 [Beggiatoa sp. SS] Length = 57 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 34/49 (69%) Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 +YVTPR L+ A+ IK+E RL EL +L+EAQRL+QR YDLEM Sbjct: 6 YYVTPRDVLSQAIDNIKKERLARLKELNAANKLVEAQRLDQRTAYDLEM 54 >gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084] gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084] Length = 1171 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 259 RHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 R +A L DC+VV+S S + + V S +GD V +E S LV Y Sbjct: 103 RCNAIARLSAGEDCLVVASARSLLRRVPPVGSGYFASSAFAVGDEVAFEEAASLLVGMGY 162 Query: 318 -KRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 D G + GTF V GD+++++P+ RV FG++++ + P TGQ I + Sbjct: 163 VDAGDAGGVSVPGTFHVHGDAVDVYPAQ-ASAPVRVEFFGDEVDRVRRMLPSTGQTIGEL 221 Query: 375 ETIKI 379 + + Sbjct: 222 AEVVV 226 >gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 15998] gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces roseosporus NRRL 11379] Length = 1177 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 24/239 (10%) Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A+A+ +K + + L+G G+ + F +A + R + + A L + + Sbjct: 15 ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 73 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274 P + V + S+ + E PR+DT + + + R+ H +V Sbjct: 74 TLLPPDTVAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPREDDPETGPVSVV 128 Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 V+ + + G+G +E V L G S + E++ +L Y R ++ RG F Sbjct: 129 VAPIRSVLQPQVKGLGDLEP-----VSLAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 183 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ RV +G+++EEI F KI + ++++ A+ + P Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 235 >gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM 44728] gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM 44728] Length = 1351 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 22/198 (11%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 Q+ + + + FT+A + +A +R + + +L P +V ++ ++ + Sbjct: 35 QVHVTAPAAARPFTVAALAQA-ERTVLAVTATSREGEELTQSLAGLLPDGSVAFYPAW-E 92 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIG 285 E PR+DT ++ + ++ R+ H L +VV+ V + G+G Sbjct: 93 TLPHERLSPRSDTVGKRLALLH----RLAHPQGAPLR-----VVVAPVRSLLQPQLKGLG 143 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 ++ V+L +G+S + +L + L Y R D+ RG F V G ++IFP E Sbjct: 144 DLKP-----VRLAVGESTDLSDLAAELSDLAYARVDLVEKRGEFAVRGGILDIFPPTDEH 198 Query: 346 VAWRVSMFGNDIEEISEF 363 + RV FG++IE I F Sbjct: 199 PS-RVEFFGDEIESIRSF 215 >gi|119485555|ref|ZP_01619830.1| hypothetical protein L8106_24270 [Lyngbya sp. PCC 8106] gi|119456880|gb|EAW38007.1| hypothetical protein L8106_24270 [Lyngbya sp. PCC 8106] Length = 508 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L + LR+L +L++ E + T Y R+ + + + ER +I+ Sbjct: 315 EIALCTEGKLRVLTNLLSQHYPERILIFTGDNATVYRISRDFLIPAITHQTPVKERHQIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 R G++ LV ++L EG+D+P+ + IL S+ IQ +GR R Sbjct: 375 SKFRQGEYKTLVASHVLNEGVDVPDARIAIILSGTA-----SEREYIQRLGRVLRKGSQA 429 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719 N + +LY + +T++ A + T++RR+ Q +++ N Sbjct: 430 NKQAVLY-EVVTENT--AEERTSQRRKGQNKYSADQN 463 >gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787] gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787] Length = 1112 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 29/261 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G S KT M + + +R I+ +++ A Q+Y E++ F + Y Sbjct: 32 GCVTSQKTHLMYALGDGFKRK-IIAVSSELKAKQIYEEYR-FLDSDVWIY---------- 79 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293 P D + + + + R ++LLE+ V++S + +E + Sbjct: 80 ----PAKDLLFYQADLRGKFLIKQRMEVYQALLEQEQVTVITSFDGFMDSLLPLEEMEKR 135 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 ++ L+ G ++ ++L +V Y+R++ G F V G ++I+P E+V R+ M+ Sbjct: 136 VISLEAGQELDFEKLKKDMVLLGYEREEQIEGPGQFAVRGGILDIYPL-TEEVPVRIEMW 194 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM-------R 406 G++I+ I F + + I N+E+I+IY + + + + + Y ++ M R Sbjct: 195 GDEIDSIRTFDVESQRSIENLESIRIYPATDFPEEQAKRVSFLDYFDKKTSMLFLDEPVR 254 Query: 407 LIE----LEKEGRLLEAQRLE 423 LIE +E+E +A R+E Sbjct: 255 LIEKGESVEEEFVQAQANRME 275 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++K E I+ D G+ DVLV ++ GLDI + I DAD+ G Sbjct: 802 VAFAHGQMKERELENIMLDFINGEIDVLVSTTIIETGLDISNANTMIIHDADQLGL---- 857 Query: 669 TSLIQTIGRAARN 681 + + Q GR R+ Sbjct: 858 SQMYQLRGRVGRS 870 >gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200] gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200] Length = 461 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT+YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 256 TKKTVDELTDYLVEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341 >gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp. 'sapolanicus'] gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp. 'sapolanicus'] Length = 1164 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/339 (19%), Positives = 143/339 (42%), Gaps = 22/339 (6%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G+ GS +F A ++E + + P+ Q+ + F P Sbjct: 29 GLKGSSLSFFAANILEKAKSNVVFFLPDNYYLQQMQEDLLRLLKRKNFLVF--------P 80 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQ 292 E + + + ++I+E R + ++ D I+ + + + ++Y Sbjct: 81 EEEILPHEQLMSDLTTISE---RTKVLTDLVFAKKTDKKIILTTPAAVFKKLTPKDTYKS 137 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + LK+G+ ++ K++ +L YKR+++ G + + G I+IF + L++ +R+ + Sbjct: 138 KSLYLKVGNEIDLKKIKRALFSLGYKREEMVEAPGQYSIRGGIIDIF-TLLDEQPFRIEL 196 Query: 353 FGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 FG++I+ I + L+ Q+ + V+ I I ++ + + A +K+ + + L Sbjct: 197 FGDEIDSIRKI-DLSAQRSKEQVQKIIIPPFANIIVDEAVVQRAYPRLKQSYEQAIKSLN 255 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 ++G EA+ L+ + ++LE + ++L P + F+Y+ E ++ Sbjct: 256 QKGLSEEAEYLQAKSK---DLLEKFREQHRFPGFEQFLHYYYP--EADSFFDYLSESTIF 310 Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510 V + S Y+ L E G LP +DN Sbjct: 311 RVRPDKIEKVS-SNNYQEILDNYNNLLEQGIILPDYIDN 348 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 ++A L + + E I V + + K LE+I + + KFD+LV ++ GLDIP Sbjct: 844 KIAGKLQKIVPEAKIAVAHGQMKEKRLEKI--MYNFYHHKFDILVCTTIIETGLDIPNVN 901 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680 + I ADK G + L Q GR R Sbjct: 902 TIIINHADKMGL----SQLYQLRGRVGR 925 >gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM 8271] gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM 8271] Length = 1182 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 146/344 (42%), Gaps = 30/344 (8%) Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 Q+ I R+ Q++ ++GS KT A +I+ + I+ ++ A + ++ + + P Sbjct: 16 QIQAAIEKRDSPQMIFHISGSMKTALAANLIKKKGQSLILTFSDE-QALKWINDLQTWLP 74 Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 + + Y ++P +E++ +R+R R+L E + I+V+ V Sbjct: 75 QRRILF-------YPTTEWLPFEVLGRSRETTA----ERIR--VLRALSEGGNEIIVAPV 121 Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 I + E + + +Q+ +G + EL+ +LV Y RQ+I RG F + G ++ Sbjct: 122 QAIVRKLFCPEHWKKYSLQVAVGKTYPLDELIKTLVTVGYDRQEIVEARGQFALRGGILD 181 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAM 396 I P E V R+ F +++ I F L QK + T I+ YV Sbjct: 182 IAPLDCEPV--RIEFFDEEVDSIRTF-DLETQKSSDARTEAWIFPVQEYVIKIEEQQELK 238 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 IK + + + L + G+ +RL ++ Y E L+ Q I + + Y Sbjct: 239 WEIKNKARKAVGRLLRLGKTEAVKRLHHKVEYLGERLD-----QGIMDENSYPFLSLLPI 293 Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500 +L ++ E +L+F+DE Q+ DF + EY Sbjct: 294 KFVSLLGWLNEQALIFLDEPLRLKEQL------DFQHSQRMEEY 331 >gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1166 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 G+ S ++ QL++G++GS K MA Q +VM + +L S+ + V Sbjct: 19 GLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASDLSSLLGEELV 77 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 F + D ++ + ++K S E + +R+ ++ +L + +S + + Sbjct: 78 YQF--FADDVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLL 128 Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 V + SQ +QL +G+ + L L+ Y++ I G F GD ++I+ Sbjct: 129 PNPDVFTKSQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI- 185 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +++ +R+ FG+DI+ I +F+P T + +E I I Sbjct: 186 TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|323353284|ref|ZP_08087817.1| DNA helicase RecG [Streptococcus sanguinis VMC66] gi|322121230|gb|EFX92993.1| DNA helicase RecG [Streptococcus sanguinis VMC66] Length = 671 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + ++V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQVQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|166714730|gb|ABY88088.1| UvrB [Stenotrophomonas rhizophila] Length = 61 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNMQRFTVYPKTHYATTR 55 >gi|255322616|ref|ZP_05363761.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277] gi|255300524|gb|EET79796.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277] Length = 638 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQR 194 DI+ + + P+ DQ AIA L E V+ +++G GSGKT M A + R Sbjct: 215 DISSWLKNLPFAPTDDQLNAIADLRADFSGEEAVRRVVMGDVGSGKTLVMLAAALSVYPR 274 Query: 195 PAIVMAPNKILAAQLYSEFKNFFP 218 A++MAP ILA Q+Y+E P Sbjct: 275 AALIMAPTSILAEQIYAEAARLLP 298 >gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M876] gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C160] gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M899] gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C427] gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C101] gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 58-424] gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M809] gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M1015] gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MN8] gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M876] gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C101] gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C427] gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M899] gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus C160] gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M1015] gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 58-424] gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus M809] gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus MN8] gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus TCH60] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus 21193] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11] gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus JKD6159] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus E1410] gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus E1410] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ST398] Length = 1168 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC 17745] gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC 17745] Length = 1098 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 112/249 (44%), Gaps = 42/249 (16%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 R+ ++ G++GS K+F +++ A +++P +++ +K + F+P+ V+ F Sbjct: 24 RKGKSVIYGLSGSQKSFLLSQSFSAGLKKPVVIVVHDKDHKEMWERDLAFFWPNVPVQSF 83 Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 P TD + S+ Q +MR A LL + VV Sbjct: 84 -------------PITDHVDFTTVARSLENQGAQMRALA---LLAWQEPAVV-------- 119 Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I + E +Q +V + D++E+ L LV Y+R D RG F V G Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D ++I+P + D R+ FG++I+ + F+ + Q R++E I+ Y + + + + Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGQSDAD 235 Query: 394 -TAMKYIKE 401 T + Y+K+ Sbjct: 236 STLLSYVKD 244 Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 +R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 GLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1166 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 G+ S ++ QL++G++GS K MA Q +VM + +L S+ + V Sbjct: 19 GLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASDLSSLLGEELV 77 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 F + D ++ + ++K S E + +R+ ++ +L + +S + + Sbjct: 78 YQF--FADDVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLL 128 Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 V + SQ +QL +G+ + L L+ Y++ I G F GD ++I+ Sbjct: 129 PNPDVFTKSQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI- 185 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +++ +R+ FG+DI+ I +F+P T + +E I I Sbjct: 186 TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1431 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 7/79 (8%) Query: 614 SEVKTL-ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 +E+ TL ++ +++ +LR+GK ++L+ N+L EG+D+P C +V D K+ LR S I Sbjct: 443 TELSTLSDQRDVLAELRVGKTNILIATNVLEEGIDVPACNMVICFDPPKD--LR---SFI 497 Query: 673 QTIGRAARNVNSKVILYAD 691 Q GR AR+ S+++L+ D Sbjct: 498 QRRGR-ARDRLSRLVLFMD 515 >gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter phenanthrenivorans Sphe3] gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter phenanthrenivorans Sphe3] Length = 1221 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A L + + + P + V F S+ + E PR+DT + + S+ ++ SA Sbjct: 91 AEDLAAALRAYLPADCVAEFPSW-ETLPHERLSPRSDT-VGRRLSVLRRLAHPESSAAGP 148 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 L + + G+G + + V LK+G +++ SL Y R D+ Sbjct: 149 LRVVVAPVRAVVQPVVAGLGEL-----VPVTLKVGQEKPFGDVVRSLADAAYARVDMVTH 203 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 RG F V G I++FP ED RV FG++++++ F Sbjct: 204 RGEFAVRGGIIDVFPP-TEDHPIRVEFFGDEVDQMRWF 240 >gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus YK9] gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus YK9] Length = 1177 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/359 (21%), Positives = 137/359 (38%), Gaps = 43/359 (11%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF--- 216 +L G+ + + QL+ G+ GS + ++ + + RP +V+ N A ++ + + Sbjct: 17 VLTGVTAGMREQLISGLAGSSRQVLVSALRSDLDRPMLVVTHNMFAAQKIAEDLQELLSP 76 Query: 217 -----FPHN---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 +P N A E VS PE R D I + Sbjct: 77 SEVLLYPANELVAAEAAVS-----SPETLAQRIDALIRLSQGFRGIV------------- 118 Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328 + S V + V + +Q + LK+G+S+ + L + Y+R D +G Sbjct: 119 ---VVPFSGVRRYVPVKGVMADAQ--ISLKVGESLPMETFLRRMTGIGYERVDRVESKGE 173 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G ++ +P VA RV F +I+ I F + + ++ + Sbjct: 174 MSVRGGIVDFYPL-TSPVACRVEWFDEEIDSIRTFDASDQRSLEKLDAFVVTPCRELPAD 232 Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 A ++ ++ L +LEK +RL+ I ++E L Q +Y Sbjct: 233 ERRFKNAAQHAQDLLDK---QLEKMADRTAKERLKGEIGSEIEKLREE---QYFSEMYKY 286 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507 ++ P TL +Y+P+D+LL +DE I + R + L +G LPS Sbjct: 287 VSLLYPERH--TLLDYLPQDTLLILDEPLRLIETARQLERDEAEWATHLLSHGKSLPSL 343 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E + I D G+ DVLV +++ G+DIP + + DADK G Sbjct: 846 DARVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 904 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 905 ---SQLYQLRGRVGR---SNRIAYA 923 >gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC 35185] Length = 1118 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 15/223 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q + ++++ R L+ G++GS K A ++P +++ ++ ++ Sbjct: 10 QDGSARKIVEAFSRRAGKTLVYGLSGSQKHALFAAACNTAEKPVVIVTHSREAIEAWRAD 69 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 P + +P D + ++ + +R LL++N Sbjct: 70 LTALLPTREL-------------MELPEVDMMAVEATAKGMERTALRMGVLGRLLKKNPV 116 Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV++ + G S + +M ++L++G ++ ++ LLS LV+ Y+ G F Sbjct: 117 IVLAHAAAAVQKGVSRRDFERMSLRLEVGATLSRETLLSRLVELGYEAAGEVDGLGQFSA 176 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 G ++I+P + + R+ F ++I+ + EF P T + +RNV Sbjct: 177 RGGIVDIYPLN-ASLPLRLEFFDDEIDSLREFDPATRRSVRNV 218 >gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1 Length = 623 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LAA G L+ V TKRMA+ LT++L +N+ +H + ER + R G+ +VL Sbjct: 397 LAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVL 456 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 457 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGL 501 >gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b] gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b] Length = 1175 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/309 (22%), Positives = 133/309 (43%), Gaps = 30/309 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-PHNAVEYFVSYY 229 QL+ G+T S K +A ++++ R +V+ N A +++ + ++ P + Y + Sbjct: 27 QLVTGLTTSAKALVLAGLVKSSSRRLVVVTHNMYQAQKMFDQLESLIGPDKTLLYPI--- 83 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCIYG-IGS 286 D + E S+ + + R A LL++ +VV + + + S Sbjct: 84 ------------DETLAGELSLTSSPELLAARIDARTRLLDQTGGVVVVPLGGLRRYVPS 131 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 E++ V LK G ++ + L Y+R G F V G ++++P E Sbjct: 132 PEAWQDSRVMLKPGSDLDLADFAKQLTGMGYERTATVTTPGEFSVRGSILDVYP-LTEAR 190 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 +R+ +F +I+ I F T + + V + I + ++ L A ++++ R Sbjct: 191 PYRIDLFDTEIDSIFTFDAETQRSLGVVGEVCITPATEFIATENQLKQAGGALRKQYD-R 249 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 +EL G + Q LE+ + D+E LE + + YS L TL +Y+ Sbjct: 250 TVEL--IGNEVIRQALEEGVVTDIERLERGDLPEKVGKYSPLLY-------TSTLLDYVG 300 Query: 467 EDSLLFVDE 475 +D++L +DE Sbjct: 301 KDAVLILDE 309 >gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC 3773] Length = 1176 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 136/327 (41%), Gaps = 58/327 (17%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF------FPH 219 + + QLLLGV GS + ++A + +A R +V+ ++ A QL ++ FP Sbjct: 23 TEDSTQLLLGVHGSARAASIAALYQAQPRQMLVVTDTQVHADQLLADLSQLTAAAMGFP- 81 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + + E +I+ RM+ AT L R + ++V V+ Sbjct: 82 ---------------------AEESLATEMAISSPELRMQRVATLLALRRQEKVIV--VT 118 Query: 280 CIYGIGSV----ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 + G+ + E+ Q + L +G++ ++ ++L+ Y + G F G Sbjct: 119 SLAGVERLLPKPETLDQASLNLAVGETYALDDIKATLMMMGYTPTKLVQTPGEFAQRGSI 178 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV---TPRPTL 392 I+I+P E+ R+ F +++++I F T ++ N ET I + ++ T Sbjct: 179 IDIYPFTGEEPV-RLDFFDDELDQIKSFDVSTQKRTGNFETATIEPVTDFIVSETDYTAA 237 Query: 393 NTAMKYIKEELKMRLIELEKE----GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448 +++ + + L+ +EK+ G L Q LE R+ + + Y+ + Sbjct: 238 AASIEAAFNDYRRELVGVEKKHATTGFALTHQLLETRVREN-----------RLLPYATH 286 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475 G GE TL Y D LL +DE Sbjct: 287 FFG---GE--TTLLAYFQPDHLLILDE 308 Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV +H ++ + I+ D G +DVLV ++ G+DIP + + +AD G Sbjct: 857 RVAAIHGQMSETQLESILFDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL--- 913 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 914 -SQLYQLRGRVGRS 926 >gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei] gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei] Length = 401 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 8/111 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + +L T+R + LT+ + E N V MH +++ +R E++++ R Sbjct: 258 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ LV++++ D ++ I IGR+ R Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVSVINYD---LPNNRELYIHRIGRSGR 360 >gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114] gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11] gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114] gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11] Length = 1151 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 24/217 (11%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 +TGS +A++ + Q P IV LA +L +E N F NAV+ F + YD Sbjct: 24 LTGSSLALAIAEIEQQHQGPIIVAVTEPQLAFRLQNEI-NQFSQNAVDVFPDWETLPYDS 82 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY- 290 + P + I++++ R+ H L ++ + ++ VS + S +S+ Sbjct: 83 FSPH------------QDIISDRLSRLYH-----LPQQKNGTLIVPVSTLLQRQSPQSFL 125 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + + + +GD + +L L K Y D + G + G I++FP +R+ Sbjct: 126 HKHALVVNVGDRLSFDKLKLQLEKSGYLHVDQVMSHGEYASRGSIIDLFPMG-NGHPFRI 184 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F ++I+ I +F P + I V++I + + T Sbjct: 185 DFFDDEIDSIRQFDPENQRTIEEVKSINLLPAHEFPT 221 >gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon] Length = 707 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +IL+ V KR+A+ + YL E+N R MH + +R + + + R G +++LV + Sbjct: 522 KILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTEFRTGVYNILVATAVAA 581 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDI G+V D KE + IGR R Sbjct: 582 RGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGR 613 >gi|322417709|ref|YP_004196932.1| transcription-repair coupling factor [Geobacter sp. M18] gi|320124096|gb|ADW11656.1| transcription-repair coupling factor [Geobacter sp. M18] Length = 1157 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYDYY 232 G+ GS + ++++ E P +V+ ++ A +L E + F P + + + +D Sbjct: 27 GLEGSAPAYLLSRLSENGAPPLVVLTADQESADELARELQFFASRPESVLPF--PAWDVT 84 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 EA P D E+ +++ +D R+ IV+ S + + E+ Sbjct: 85 PFEAASPHPDIVGERLNALVRLLD----GGARA-------IVLPVASALQRVIPRETLGG 133 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + L G+ +E++ L+ LVK Y + RGTF V G ++IFP E R+ Sbjct: 134 VCQYLVAGEELERENLVEKLVKLGYSHVPLVEDRGTFSVRGGILDIFPPDQEK-PVRIEF 192 Query: 353 FGNDIEEISEFYPLT 367 FG+ +E + F P++ Sbjct: 193 FGDLVETMRLFDPVS 207 >gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533] gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533] Length = 461 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT+YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 256 TKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341 >gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24] gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24] Length = 1222 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 39/269 (14%) Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160 PS+ L R + D + S S S+D +Q+ P+G + A +A++ Sbjct: 6 PSLTGLRRALAGDTTFARV----QAEASRSFGTRSED---YQISA---PAGLRAALLAEM 55 Query: 161 ---LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 L +HS + +G +A + A R A L + + F Sbjct: 56 SDGLAALHSGDGASPAASNDDAGAPLVLA--VTATGREA----------EDLTAALRAFL 103 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS---LLERNDCIV 274 P +V F S+ + E PR+DT + S + R+ H T S L + Sbjct: 104 PAGSVAEFPSW-ETLPHERLSPRSDTVGRRLSVLR----RLAHPETASGGPLRVVVAPVR 158 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + G+G ++ V LK+G +++ SL Y R D+ RG F V G Sbjct: 159 AVVQPIVAGLGDLKP-----VTLKVGQDAPFSDVVRSLSDAAYARVDMVTHRGEFAVRGG 213 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +++FP ED RV FG++++++ F Sbjct: 214 ILDVFPP-TEDHPIRVEFFGDEVDQMRWF 241 >gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656] gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656] Length = 1177 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/311 (21%), Positives = 132/311 (42%), Gaps = 23/311 (7%) Query: 168 EKVQLLLGVTGS--GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 EK L+ VTG + M ++ +++ + A +LY E+ +FF V Sbjct: 22 EKSSGLISVTGCIDAQKSQMIYAFGGHRKNKLIVTFGEQKAKELYDEY-SFFDKEVV--- 77 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284 Y P D + + R A +++ E+ +V++ + + Sbjct: 78 -----------YYPSKDVLFYQSDIRGNLLTAERIRALKAIREQERVTLVTTFDALMNTM 126 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 +E + ++ L+ G ++ KE+ ++L++ Y+++ G F V G +++FP E Sbjct: 127 APIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQVQTMGQFSVRGGILDVFPL-TE 185 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 + R+ ++G++I+ I F + + I N++ + IY + V + +K E K Sbjct: 186 ENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAAELVLSDEEKAGGIDKLKAEAK 245 Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 +L K+ + EA R+ + D E+ E G +L+ E L + Sbjct: 246 RVSDKLRKQMKTEEAHRV--TVMAD-ELTEEWGELSMYAGMDAFLS-YFFDERVGILDYF 301 Query: 465 IPEDSLLFVDE 475 P DSL+F DE Sbjct: 302 NPSDSLIFFDE 312 Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 554 LVDPPVEIRSARTQVEDVYDE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYER--N 606 L +PP++ +T V + DE IN + ++ R D+T L E + Sbjct: 802 LEEPPMDRVPIQTYVMEYNDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPD 861 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 V + H ++K E I+ G+ DVLV ++ GLDI + I DAD G Sbjct: 862 ATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGL-- 919 Query: 667 SKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 920 --SQLYQLRGRVGRS 932 >gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1201 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 16/176 (9%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 QRP + + + A+ L P ++V F ++ + E PR+DT ++ + + Sbjct: 56 QRPVLAVTATEREASDLADALGCLLPEDSVALFPAW-ETLPHERLSPRSDTVGQRLAVLR 114 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKE 307 R+ H L +VV+ V + G+G +E V+++ GD V +E Sbjct: 115 ----RLAHPDPSDPLTTPLRVVVAPVRSVLQPLVSGLGDLEP-----VRIRPGDEVPLEE 165 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++ +L Y R D+ RG V G +++FP E+ R+ +G+ +E++ F Sbjct: 166 VVQALANTGYARVDLVEKRGDMAVRGGILDVFPP-TEEHPLRLEFWGDTVEDVRYF 220 >gi|162329441|ref|YP_001604241.1| putative helicase [Acidianus filamentous virus 7] gi|157310339|emb|CAJ31636.1| putative helicase [Acidianus filamentous virus 7] Length = 564 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 ++ +R+ A+ L+E + I Y+ S+ K ER+ I +L+ GK L+ +L EGL Sbjct: 433 IIVRRISTAKKLSELFNQNGISADYVTSQTKLEERMRKIENLKNGKIQTLIATSLADEGL 492 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 DIP L+ +L K S+ L+Q IGR R +K Sbjct: 493 DIPNLKLIILLSQGK-----SRIKLVQRIGRVMRPYKNK 526 >gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans Nor1] gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans Nor1] Length = 1109 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 15/225 (6%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+ Q L + K L+ G+TG+ K+ +A R ++ + +QL S+ Sbjct: 13 ALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDLAT 72 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P P +P D ++ + ++ R LL IV+ Sbjct: 73 LLPA-------------APVLELPALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVIVL 119 Query: 276 SSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 ++ I E V L G V+ ++LL++LV+ Y+R D G F G Sbjct: 120 ATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVDNVGQFSARGG 179 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 I+IFP + R+ +FG++I+ + EF P T + I ++ I Sbjct: 180 IIDIFPLN-RPYPLRLELFGDEIDSLREFDPATQRSIGALDKADI 223 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 +M L+E L + I V + LER+ + D G +D+LV +++ GLD+P Sbjct: 774 KMHSRLSEILPDARIGVAHGQMSEDRLERVML--DFYEGNYDILVCTSIIESGLDVPNAN 831 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + DADK G L Q GR R Sbjct: 832 TIIVYDADKFGL----AQLYQMRGRVGRT 856 >gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026] Length = 461 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT+YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 256 TKKTVDELTDYLEEQGLKVTKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341 >gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] Length = 461 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT+YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 256 TKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 316 VNLVVNYEIPKD-----LEFVIHRIGRTGRN 341 >gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895] gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895] Length = 623 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LAA G L+ V TKRMA+ LT++L +N+ +H + ER + R G+ +VL Sbjct: 397 LAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVL 456 Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D +D + + + IGR R N+ + Sbjct: 457 VATAVAARGLDIPNVTHVINYDLPSDIDDY-------VHRIGRTGRAGNTGL 501 >gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635] gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635] Length = 1168 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ ++ ++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKSA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10394] gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10394] Length = 1167 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +SS+ + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +FYP T + +E I I Sbjct: 194 EFFGDDIDSIRQFYPETQKSFEQLEGIFI 222 >gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str. Manfredo] gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus pyogenes str. Manfredo] Length = 1167 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +SS+ + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +FYP T + +E I I Sbjct: 194 EFFGDDIDSIRQFYPETQKSFEQLEGIFI 222 >gi|166714767|gb|ABY88097.1| UvrB [Stenotrophomonas sp. LMG 11000] Length = 60 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYATTR 55 >gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC 10782] gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC 10782] Length = 1167 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +SS+ + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +FYP T + +E I I Sbjct: 194 EFFGDDIDSIRQFYPETQKSFEQLEGIFI 222 >gi|302543645|ref|ZP_07295987.1| DEAD/DEAH family helicase [Streptomyces hygroscopicus ATCC 53653] gi|302461263|gb|EFL24356.1| DEAD/DEAH family helicase [Streptomyces himastatinicus ATCC 53653] Length = 1046 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 +R L +T A + ++ + I + + T ER + + DLR GK L ++L Sbjct: 561 AMRALGFCVTVAHAHFMADFFRQAGISAQALDGSTPTAERAQALHDLREGKVQALFSVDL 620 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 EGLDIP+ + +L S T +Q +GR R K +L Sbjct: 621 FNEGLDIPDVDTLLLLRPTA-----SATVFLQQLGRGLRRTPDKAVL 662 >gi|153006821|ref|YP_001381146.1| type III restriction protein res subunit [Anaeromyxobacter sp. Fw109-5] gi|152030394|gb|ABS28162.1| type III restriction protein res subunit [Anaeromyxobacter sp. Fw109-5] Length = 1418 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G+R L+ + AE +L R +RVR +HS+ + +R + DL G+ D + Sbjct: 564 LGEHGGMRTLVFCCSIPHAEFAKRWLEGRGVRVRAVHSDPGSDDRSRALADLAAGRIDAV 623 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 ++L EG+D+P V +L + S +Q +GR R K Sbjct: 624 CAVDLFNEGVDVPLVDRVVMLRPTE-----SPVVFLQQLGRGLRIAEGK 667 >gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium reilianum] Length = 932 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++++ V +K++A L + +H ++ +RI+ + D R GK D L+ +L Sbjct: 611 QVIIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLAS 670 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 GLDI G+ +++ D G + + RA RN + V L + + ++LAI Sbjct: 671 RGLDIK--GVQTVINYDMPGQFEAYLHRVGRTARAGRNGRA-VTLVGEADRRMLKLAI-- 725 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 +K KH I P +V K++E ++ Sbjct: 726 -----KKSSAEQIKHRIIPAAVASKMLETLE 751 >gi|302422468|ref|XP_003009064.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261352210|gb|EEY14638.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 532 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 573 DEIN-------LAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 D+IN LA QG R L+ + LT+ + R++ + T+ER EI Sbjct: 143 DQINEITVRSWLARAQGRRSTLVFCVDLAHVAGLTQKFRRFGLDARFVTGDTPTIERSEI 202 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R R G+F VLV + EG DIP + + RS+ L+Q IGR R Sbjct: 203 LRAFRNGEFPVLVNCGVFTEGTDIPNIDCIILARP-----TRSRNLLVQMIGRGMRLHAG 257 Query: 685 KVILYADTITKSIQLAIDET 704 K + + S++ I T Sbjct: 258 KTNCHIIDMVSSLETGIVTT 277 >gi|218679341|ref|ZP_03527238.1| excinuclease ABC subunit B [Rhizobium etli CIAT 894] Length = 201 Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 57/145 (39%), Gaps = 50/145 (34%) Query: 33 KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGE-------------- 77 KQLE D ++ R I S+AGKHRK H A E Sbjct: 36 KQLEADAEAAGVESQREIASKAGKHRKKVENEARKHAEAVAARSAEGRKPERASEPMRGP 95 Query: 78 ----FQSQSSISMS------------EKQTR-------------------EISEQTMTPS 102 QS S+S S + +TR IS +T + Sbjct: 96 RGAKAQSAGSVSASKTARGVSIGGSSDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTAT 155 Query: 103 VQALARLIQSDNPLLKNGKIWTPHR 127 V+AL+ LI+S NPL KNGKIWTPHR Sbjct: 156 VEALSALIESGNPLHKNGKIWTPHR 180 >gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149] gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149] Length = 1229 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP + + A L S + P V F S+ + E PR+DT + + + Sbjct: 72 RPVLAVTATSREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAVLR- 129 Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306 R+ H R +VV+ V + G+G +E V+L GD + + Sbjct: 130 ---RLAHPDAADARGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VRLAAGDEADLE 181 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++ L Y R D+ RG F V G +++FP E + RV +G+++EEI F Sbjct: 182 QVARRLADMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 237 >gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes 195] gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes 195] Length = 1148 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/333 (22%), Positives = 141/333 (42%), Gaps = 42/333 (12%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P DQ + L + + +K + + V +G+ F++A V ++ P +++ Sbjct: 8 PLIDQSPSFNSLFEAL---DKGEADISVLDAGRGFSLAAVYRKLKCPMLIITSQ------ 58 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPE-AYVPRTD--TYIEKESSINEQIDRMRHSAT-R 264 P A E V Y E ++P Y S N +++MR + Sbjct: 59 ---------PERARELLVQIAAYTGEEPGFLPDPSLLPYQRAVSDRNTSLEKMRLAGILG 109 Query: 265 SLLERNDC-IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 + D I+VS+V + S E + Q +Q+ G E ++L+ + Y++++I Sbjct: 110 GFIRSQDAQIIVSAVPALLQRYVSPEIFKQSFLQVWTGLETEPQDLIRRFQQLGYRQENI 169 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 I GT+ G ++IFP + ED R+ FGN +E + F P Q R+ +++ N Sbjct: 170 VEIPGTYSRRGGILDIFP-YTEDNPVRLEFFGNTLESLRVFDP---QSQRSGKSL----N 221 Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 ++P L + +EL RL L + E R ++ D+ L+ + Sbjct: 222 ELTISPASELFHLGQLPVKELNARLEALLTDNLNPEFSR---TLSADIARLKEGLKPEYP 278 Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + ++ ++F+Y+P D+L+ +DE Sbjct: 279 DFFAPLFNTS-------SIFDYLPADALVVLDE 304 >gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1] gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1] Length = 1178 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/279 (20%), Positives = 119/279 (42%), Gaps = 15/279 (5%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 GV+ S + + +A + +V+ + + A +L + F + V F Sbjct: 32 GVSDSQRAYLIAALKNRAVPQILVVTADSLEAKKLAEDLLFFLSADEVAVF--------- 82 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQM 293 P + + ++ + + R +LL + +VV+ + + + + + + + Sbjct: 83 ----PASSVLPYETAARSPEFTAKRLKVMENLLMKKPMVVVAPIQALLTKVVAPDIVKKF 138 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 ++LK+GD + +++S L Y+R ++ +G F V G ++I+P ++ +R+ F Sbjct: 139 TLELKVGDIIAMDDIVSKLSAMGYERVEMIEAQGQFAVRGGILDIYPL-TQEYPYRLEFF 197 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 ++I+ I EF + I ++ I + V T +A I EELK R L Sbjct: 198 DDEIDSIREFLTEDQRSIDKLDKIFVGPAREVVYDEDTAKSAAIAIAEELKQRRNLLNSL 257 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 G A+ L +++ + L +S E Y +L R Sbjct: 258 GHPELAEHLAEKVEEHIGKLSNGLFFESAELYISHLYPR 296 >gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus gasseri JV-V03] gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus gasseri JV-V03] Length = 464 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT+YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 259 TKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 318 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 319 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 344 >gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL B-59395] gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL B-59395] Length = 1193 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 37/223 (16%) Query: 155 AAIAQLLKGIHSREKV-QLLLGVTG--SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 AA QL RE++ Q L +T + + F +A++ E + P +V+ N A L + Sbjct: 17 AAFGQL------RERIGQARLDITAPDAARPFVVAQLAEVSEHPVLVVTANGREADDLTT 70 Query: 212 EFKNFFPHNA-----VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID------RMRH 260 E P A V F S+ + E P DT + + ++ D R+ Sbjct: 71 ELAELLPCGAGGTPVVAQFPSW-ETLPHERLSPSADTVGARLAVLSRLADPSVAPLRVVI 129 Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + RSL++ G+G + + V L G E L+ LV+ Y+R Sbjct: 130 ATVRSLVQ----------PMAPGLGGMRA-----VTLTEGSEAEFDALIEKLVEMAYERV 174 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G ++IFP+ D RV +G++I +I F Sbjct: 175 DMVGARGEFAVRGGILDIFPT-TADYPVRVEFWGDEITDIRAF 216 >gi|302695009|ref|XP_003037183.1| hypothetical protein SCHCODRAFT_47730 [Schizophyllum commune H4-8] gi|300110880|gb|EFJ02281.1| hypothetical protein SCHCODRAFT_47730 [Schizophyllum commune H4-8] Length = 518 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 11/106 (10%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E LT+ + RY++S ER E+I R G+F VL+ +L EG DIP V Sbjct: 296 ESLTQAFRSYGVDARYVYSGTPAAERRELIAQFRAGEFPVLINCAILTEGADIPNIDCVV 355 Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITK 695 + RS+ Q IGR R + +I + DT T+ Sbjct: 356 VARPT-----RSRNVFAQMIGRGMRLSPSTGKTDCHIIDFVDTQTR 396 >gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4] gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4] Length = 2417 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE----------VKTLERIEIIRDLR 629 Q+ LRIL+ V T+ A +LT L + + Y+H++ + + ++ IIR R Sbjct: 651 QKDLRILVFVETRFGASNLTSMLKKEPFQ-EYLHTKRLVGHNGVDGMDSEKQQSIIRKFR 709 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVIL 688 GK ++V N+L EG+D+ +C +V D + S SLIQ GRA ++N + +I+ Sbjct: 710 DGKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIII 764 Query: 689 YAD 691 Y D Sbjct: 765 YND 767 >gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] Length = 1187 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 14/234 (5%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ ++ + + L + + F +A + RP + + A L + ++ Sbjct: 26 ALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALRS 85 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P V + ++ + E PR+DT + + + R+ H A +VV Sbjct: 86 LLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPAADDPAAGPVSVVV 140 Query: 276 SSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + + + V+ +++ V L+ G + E++ +L Y R ++ RG F V G Sbjct: 141 APIRSVLQP-QVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 199 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 +++FP E+ RV +G+DIEEI F KI + ++++ + + P Sbjct: 200 ILDVFPP-TEEHPLRVEFWGDDIEEIRYF------KIADQRSLEVAEHGLWAPP 246 >gi|145218895|ref|YP_001129604.1| type III restriction enzyme, res subunit [Prosthecochloris vibrioformis DSM 265] gi|145205059|gb|ABP36102.1| type III restriction enzyme, res subunit [Chlorobium phaeovibrioides DSM 265] Length = 556 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 AE L R ++ +HS++ +R + + R+G D+L+ I +L EG+DIPE LV Sbjct: 390 AERLQPLFASRGVKTALLHSQLPREQRFKNLSGFRMGHIDLLISIEMLNEGIDIPEVNLV 449 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQLAIDETTRRRE 709 A + S+ +Q +GR R K + AD + L I+ + R Sbjct: 450 AFMRVT-----HSRRIFLQQLGRGLRISKGKENVLVLDFVADIRRIAAGLEINRLAKERS 504 Query: 710 KQLE 713 +E Sbjct: 505 AGME 508 >gi|14520414|ref|NP_125889.1| DNA repair protein RAD25 [Pyrococcus abyssi GE5] gi|5457629|emb|CAB49120.1| DNA/RNA repair helicase [Pyrococcus abyssi GE5] Length = 446 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 8/102 (7%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A QG R+L+ V E L + L ER + ++ S+ + R EI+ + G+ VLV Sbjct: 311 ANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQ--SPNRWEILEKFKNGEIPVLVS 368 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LL+EG+DIPE + + K S IQTIGRA R Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDVMTIQTIGRALR 404 >gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis DSM 43017] gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis DSM 43017] Length = 1199 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 27/195 (13%) Query: 180 GKTFTMAKVIEAMQ------RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 G T T V+ A+ RP + + P A +L + ++ N V F S+ + Sbjct: 42 GSTATHQLVVAALAADRGAGRPVLAVTPTGRQAEELTAALRSLLGENLVADFPSW-ETLP 100 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVE 288 E PR DT + K + ++ + H R +VV++V + G+G + Sbjct: 101 HERLSPRADT-VGKRLEVLRRLAQPDHGGLR--------VVVATVRSLIQPMAPGLGGLH 151 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 V+L++G + + +L LV+ Y R D+ RG F V G ++IF E Sbjct: 152 P-----VELRVGQESDFEAVLDQLVELAYTRVDMVEKRGEFAVRGGILDIFGPTAEH-PH 205 Query: 349 RVSMFGNDIEEISEF 363 R+ +G+++ EI F Sbjct: 206 RIEFWGDEVSEIRAF 220 >gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus ATCC 27064] Length = 1206 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 14/234 (5%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ ++ + + L + + F +A + RP + + A L + ++ Sbjct: 45 ALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALRS 104 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P V + ++ + E PR+DT + + + R+ H A +VV Sbjct: 105 LLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPAADDPAAGPVSVVV 159 Query: 276 SSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + + + V+ +++ V L+ G + E++ +L Y R ++ RG F V G Sbjct: 160 APIRSVLQP-QVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 218 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 +++FP E+ RV +G+DIEEI F KI + ++++ + + P Sbjct: 219 ILDVFPP-TEEHPLRVEFWGDDIEEIRYF------KIADQRSLEVAEHGLWAPP 265 >gi|29831745|ref|NP_826379.1| ATP-dependent helicase [Streptomyces avermitilis MA-4680] gi|29608862|dbj|BAC72914.1| putative ATP-dependent helicase [Streptomyces avermitilis MA-4680] Length = 973 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ + D+++ +R L + K A + ++ E + + S+ R + Sbjct: 472 ARIVVKQIQDKVSNPG--AMRALGFCVNKAHAHFMADFFREAGFQAAALDSDSPAGVRAQ 529 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + DLR GK V+ ++L EGLDIP+ + +L S T +Q +GR R Sbjct: 530 ALSDLRNGKLQVIFSVDLFNEGLDIPDVDTLLLLRPTG-----SATVFLQQLGRGLRRTE 584 Query: 684 SKVIL 688 SK +L Sbjct: 585 SKPVL 589 >gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus 214-1] gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus 214-1] Length = 1164 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 15/196 (7%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++ + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I A LL IVV++ + Y + + Sbjct: 81 -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 ++Q + G E KEL L+ Y+R + + G F + GD ++++P E+ Sbjct: 131 TDFTQAKRSFEPGQEYELKELNEWLLASGYQRDSLVVRPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEF 363 R+ FG++I+ I EF Sbjct: 190 VRIEFFGDEIDTIKEF 205 >gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 15912] gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 15912] Length = 1167 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 106/216 (49%), Gaps = 19/216 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L+LG++ + K MA +++++ A+++ + A +L S+F V F+ Sbjct: 26 ELILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASDFIALLGEEKVHTFLG--- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCI-YGIGSVE 288 D + + +++ R A L + + I+V++VS I + S + Sbjct: 82 ----------DDNPLAEFVFASQERQFARLEALNFLCQEDRQGILVTNVSGIKLLLPSPK 131 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA- 347 ++ I QLK+G ++ L +L K Y++ + +G F + GD ++IF +E + Sbjct: 132 VFASSIFQLKVGQEIDLTTLSDTLQKIGYQKVSQVLQQGEFSLRGDILDIF--EIEQLKP 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 +R+ FG++I+ I F P + + + NVE +++ A S Sbjct: 190 YRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVS 225 Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196 F+ Y + DQ +I ++ K + S R +LL+G G GKT M +A+ + Sbjct: 604 FEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQV 663 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223 V+ P +LA Q Y+ FK F AVE Sbjct: 664 AVLVPTTVLAQQHYANFKERFESFAVE 690 >gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1171 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/319 (20%), Positives = 136/319 (42%), Gaps = 47/319 (14%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L+K I ++ ++ G + K+ + + + ++++PN+ +A + Y F + Sbjct: 16 IIELVKRIKHNNELNII-GSSRYAKSIIINSIANKENKDILLISPNEEIAYKWYGYFDSI 74 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 N + YY P +P KE+ + Q+ + + E N I+ + Sbjct: 75 DNRNVL--------YYPPSENLPYASINRSKETEYS-QLSVISKIIKKERKELN-IIITT 124 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 S + + + + I L G+ ++ KEL LV Y ++++ G++ G+ I Sbjct: 125 ERSLQPHLIKINQFKENIFTLIKGNELDIKELTKKLVLLGYNKENLTSQEGSWSRRGEII 184 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 +I+P + E + R+ F N I++I E+ P++ + + +V ++I + R +L Sbjct: 185 DIYPVNNE-LPVRIEYFDNIIDKIREYDPVSQRTLDSVNKVEIVQVGFNLLIRKSL---- 239 Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 + L ++ T++ E + T N RYL E Sbjct: 240 -----------------------ENLSEQGTFNSEEITTKN------NLDRYLGVIE--E 268 Query: 457 PPPTLFEYIPEDSLLFVDE 475 P L +YI +++L+ +DE Sbjct: 269 HPSNLLDYINKETLIVIDE 287 >gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes HL044PA1] Length = 1194 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 40/206 (19%) Query: 181 KTFTMAKVIEAMQRPAIVMAPNKIL-----------------AAQLYSEFKNFFPHNAVE 223 +T T+ + A RPA+V ++ L A + + + + +AV Sbjct: 28 RTPTLDLQVTASARPAVVAVLSRALDGSRRLPVLLVTSTFREAEESVATLETWLGGDAVC 87 Query: 224 YFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 Y+ S+ + E PRTDT + + + ++ + RSLL+ Sbjct: 88 YYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEGPQVVVAPVRSLLQPQ------- 139 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + G+G ++ V L +G+ + EL + L+ Y R D+ RG F V G ++ Sbjct: 140 ---VAGLGRIKP-----VHLAVGEEHDLTELATELINAAYSRVDMVERRGEFAVRGGIVD 191 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEF 363 +FP LE R+ FG+ IEE++ F Sbjct: 192 VFPPVLEHPV-RIDFFGDKIEEMTSF 216 >gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32] gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32] Length = 1169 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+ GS + ++++ + R ++ P+ A +LY E + + + + +D Sbjct: 35 LAGLKGSAPAYILSRLWDEHSRLLFIITPDADTAEELYREMRFYSGSDERVLYFPPWDTA 94 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 + P D ++ + + +D R ++V + + + ++ Q Sbjct: 95 PFDTASPHADIVGQRLNVLFRMMD-----------GRAGAVIVPLPALMQKVLPRKTLGQ 143 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + + G+ VE+ LL LVK Y + RG F + G ++IFP L R+ Sbjct: 144 ISQYIVAGEEVERDLLLEKLVKLGYSHVPLVEDRGGFSIRGGILDIFPPDLP-TPVRIEF 202 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 FG+ ++ I F P+T + ++ ++ + + + V L +K Sbjct: 203 FGDFVDTIRTFDPVTQRSLQPLQELILLPSREVVISEEVLTAFAPRLK 250 >gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1] gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1] Length = 1148 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 37/307 (12%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 + V +G+ F++A V ++ P +V+ A +L + ++ Y + Sbjct: 30 ISVLDAGRGFSLAAVYRKLKCPMLVITSQPERARELLEQ-------------IAAYSGEE 76 Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSAT-RSLLERNDC-IVVSSVSCIYG-IGSVE 288 P ++P Y S N +++MR + + D I+V++V + S + Sbjct: 77 P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARIIVTAVPALLQRYISPK 135 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + Q VQ+ G E + L+ + Y+++ I + GT+ G ++IFP H ED Sbjct: 136 VFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGTYSHRGGILDIFP-HTEDNPV 194 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FGN +E + F P + + + V N ++P + + ++ELK +L Sbjct: 195 RLEFFGNTLESLRNFDPQSQRSGKQV-------NELTISPASEIFHLGQLPRQELKNKLD 247 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 L + E R ++ D+ L+ + E ++ P ++ +Y+P D Sbjct: 248 ALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFA-------PLFNTSSILDYLPAD 297 Query: 469 SLLFVDE 475 +L+ +DE Sbjct: 298 ALVVLDE 304 >gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1] gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1] Length = 1148 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 37/307 (12%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 + V +G+ F++A V ++ P +V+ A +L + ++ Y + Sbjct: 30 ISVLDAGRGFSLAAVYRKLKCPMLVITSQPERARELLEQ-------------IAAYSGEE 76 Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSAT-RSLLERNDC-IVVSSVSCIYG-IGSVE 288 P ++P Y S N +++MR + + D I+V++V + S + Sbjct: 77 P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARIIVTAVPALLQRYISPK 135 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + Q VQ+ G E + L+ + Y+++ I + GT+ G ++IFP H ED Sbjct: 136 VFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGTYSHRGGILDIFP-HTEDNPV 194 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FGN +E + F P + + + V N ++P + + ++ELK +L Sbjct: 195 RLEFFGNTLESLRNFDPQSQRSGKQV-------NELTISPASEIFHLGQLPRQELKNKLD 247 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 L + E R ++ D+ L+ + E ++ P ++ +Y+P D Sbjct: 248 ALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFA-------PLFNTSSILDYLPAD 297 Query: 469 SLLFVDE 475 +L+ +DE Sbjct: 298 ALVVLDE 304 >gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus JCSC1435] gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus JCSC1435] Length = 1169 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 69/312 (22%), Positives = 136/312 (43%), Gaps = 39/312 (12%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G++ S K +A+ Q+ +++ N A +L ++ + H+ V Y Y Sbjct: 28 LVTGLSPSAKATIIAEKYLKDQKQMLLITNNLYQADKLETDILQYIDHSEV------YKY 81 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290 P D E+ S+ + Q+ R +L + + ++ + + E + Sbjct: 82 -------PVQDIMTEEFSTQSPQLMSERVRTLTALAHNKKGLFIVPLNGLKKWLTPFELW 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + L++G+ ++ E L+ LV Y+R+ + G F + G I+I+P + V R+ Sbjct: 135 KDHQITLRVGEDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQPV--RI 192 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +F +++ I +F T + N+E + I S YV + +++++ ELK Sbjct: 193 ELFDTEVDSIRDFDVETQRSNDNIEEVSITTASDYVIT----DDVIQHLQSELKTA---- 244 Query: 411 EKEGRLLEAQR--LEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFE 463 EA R +++ + DL+ ET S + E + L R E P TL + Sbjct: 245 ------YEATRPKIDKSVRNDLK--ETYESFKLFETTFFDHQLLRRLVAFMYEQPSTLID 296 Query: 464 YIPEDSLLFVDE 475 Y +D+++ DE Sbjct: 297 YFAKDAIIVADE 308 >gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans] Length = 616 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 15/158 (9%) Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 GS EL I Q+I D +++S +Q+ D + +I++ V TK Sbjct: 342 GSLELSANHNI--RQVIEICDENDKETKLKSLLSQIYDT-------GENPGKIIIFVETK 392 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R + L Y+ +R +H + ER ++R+ R GK ++LV ++ GLD+ G Sbjct: 393 RRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVD--G 450 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 + +++ D + +S I IGR R+ N+K YA Sbjct: 451 IKYVINFD---YPQSSEDYIHRIGRTGRS-NTKGTSYA 484 >gi|328945679|gb|EGG39830.1| DNA helicase RecG [Streptococcus sanguinis SK1087] Length = 671 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FSQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum] Length = 1883 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE----------VKTLERIEIIRDLR 629 Q+ LRIL+ V T+ A +LT L + + Y+H++ + + ++ IIR R Sbjct: 398 QKDLRILVFVETRFGASNLTSMLKKEPFQ-EYLHTKRLVGHNGVDGMDSEKQQSIIRKFR 456 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVIL 688 GK ++V N+L EG+D+ +C +V D + S SLIQ GRA ++N + +I+ Sbjct: 457 DGKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIII 511 Query: 689 YAD 691 Y D Sbjct: 512 YND 514 >gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus ATCC 27064] Length = 1176 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 14/234 (5%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ ++ + + L + + F +A + RP + + A L + ++ Sbjct: 15 ALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALRS 74 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P V + ++ + E PR+DT + + + R+ H A +VV Sbjct: 75 LLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPAADDPAAGPVSVVV 129 Query: 276 SSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + + + V+ +++ V L+ G + E++ +L Y R ++ RG F V G Sbjct: 130 APIRSVLQP-QVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 188 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 +++FP E+ RV +G+DIEEI F KI + ++++ + + P Sbjct: 189 ILDVFPP-TEEHPLRVEFWGDDIEEIRYF------KIADQRSLEVAEHGLWAPP 235 >gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis] gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis] Length = 605 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 9/111 (8%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 +YD+ AA G +I++ V TK+ + L ++ + V +H + ++R ++ D R Sbjct: 363 IYDQ---AAMPG-KIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRS 418 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 G+ ++LV ++ GLDI G+ +++ D F +S I IGR RN Sbjct: 419 GRANILVATDVAARGLDID--GIKYVINFD---FPQSSEDYIHRIGRTGRN 464 >gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W1] gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W1] Length = 1169 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 21/194 (10%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + LK+G+ ++ L+ LV Y+R+ + G F + G I+I+P L Sbjct: 131 VEMWQSHQMTLKVGEDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGT 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +++ I +F T + N+E ++I S Y+ + ++KE + Sbjct: 189 PVRIELFDTEVDSIRDFDVETQRSNENIEEVEITTASDYIITDEVIQHLQTHLKEAYEHT 248 Query: 407 LIELEKEGR-----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ++EK R E+ +L + +D ++L + E P T+ Sbjct: 249 RPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPSTI 294 Query: 462 FEYIPEDSLLFVDE 475 +Y +D+++ VDE Sbjct: 295 IDYFRDDAIIAVDE 308 >gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008] gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008] Length = 1098 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 42/249 (16%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 R+ ++ G++GS K+F +++ A + +P +++ +K + F P+ V F Sbjct: 24 RKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLAFFMPNAPVLSF 83 Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 P TD + S+ Q +MR A LL + VV Sbjct: 84 -------------PTTDHVDFTTVARSLEVQGAQMRALA---LLAWQEPAVV-------- 119 Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I + E +Q +V + D++E+ L LV Y+R D RG F V G Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D ++I+P + D R+ FG++I+ + F+ + Q R++E I+ Y + + + + Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGKSDAD 235 Query: 394 -TAMKYIKE 401 T + Y+KE Sbjct: 236 STLLSYVKE 244 Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 +R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 GLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum] Length = 724 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 581 QGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 QGL R ++ V TK+MA+ LT L + NI +H + ER E + D R GK VLV Sbjct: 541 QGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADFRFGKCHVLV 600 Query: 638 GINLLREGLDI 648 N+ GLDI Sbjct: 601 ATNVAARGLDI 611 >gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4] gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4] Length = 464 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 259 TKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 318 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 319 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 344 >gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] Length = 461 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 256 TKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341 >gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440] gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440] Length = 1216 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 23/195 (11%) Query: 181 KTFTMAKV-----IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 + F +A V + RP + + A L + P + V F S+ + E Sbjct: 41 RPFAVAAVAADEPVGGAGRPVLAVTATSREAEDLAVALGSLIPADQVAVFPSW-ETLPHE 99 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVE 288 PR+DT + + + R+ H R+ +VV+ V + G+G +E Sbjct: 100 RLSPRSDTVGRRLAVLR----RLAHPEATDAQGRSGPLRVVVAPVRSLLQPQLKGLGELE 155 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 V+L GD + +++ L Y R D+ RG F V G +++FP E + Sbjct: 156 P-----VRLSAGDEADLEDVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS- 209 Query: 349 RVSMFGNDIEEISEF 363 RV +G+++EEI F Sbjct: 210 RVEFWGDEVEEIRTF 224 >gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG 18811] gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG 18811] Length = 1172 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 48/317 (15%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLGV GS + ++A + EA R +V+ ++ A QL+SE + S ++ Sbjct: 25 QLLLGVNGSARAASVAALYEANPRQMLVVTDTQVHADQLFSELSSLM--------TSVFN 76 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV--- 287 + E+ + E +I+ R++ A+ L + + V+ V+ + G+ + Sbjct: 77 FPAEES--------LATEIAISSPDLRLQRVASLLALRKGEAKVI--VTSLAGVERLLPR 126 Query: 288 -ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 E+ + L +G + + ++ +L+ Y + G F G I+I+P D Sbjct: 127 PETVDAAKLSLTVGQTYQLNDIKKTLMMMGYTPTKLVQGAGEFAQRGSIIDIYPL-TSDE 185 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNV--------ETIKIYANSHYVTPRPTLNTAMKY 398 R+ F ++++++ F ++ QK V T I + + Y + T+ TA Sbjct: 186 PIRLDFFDDELDQLKNF-DVSTQKSTTVLKKYHVQPATDFIVSETQYDIAKQTIETAFNN 244 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 ++EL + EG +L G + Y+ + GE Sbjct: 245 YRKELTGVAKKHATEG-----------FAATQHVLNEHGRVNQLLPYATHFFD---GET- 289 Query: 459 PTLFEYIPEDSLLFVDE 475 TL +Y +D L+FVDE Sbjct: 290 -TLLDYFSDDVLVFVDE 305 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV +H ++ + ++ D G +DVLV ++ G+DIP + + +AD G L Sbjct: 854 RVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMG-LSQ 912 Query: 668 KTSLIQTIGRAAR 680 L +GR+AR Sbjct: 913 LYQLRGRVGRSAR 925 >gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans] gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans] Length = 621 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LAA L+ V TKRMA+ LT++L +N+R +H + ER + R GK +L Sbjct: 401 LAASDDGLTLIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERERALAAFRSGKASLL 460 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 461 VATAVAARGLDIPNVTHVINYDLPND-----IDDYVHRIGRTGRAGNTGV 505 >gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A] gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A] Length = 442 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA + + ++ TK E + +LYE + +++H +++ +R II R G+ +VL Sbjct: 238 LADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVL 297 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 V ++ G+DIP V D R + IGR+ R S V L ++T Sbjct: 298 VATDIAARGIDIPAISHVINYD-----LPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDR 352 Query: 697 IQLA 700 +A Sbjct: 353 AAMA 356 >gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola CNS-205] gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola CNS-205] Length = 1218 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 23/195 (11%) Query: 181 KTFTMAKV-----IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 + F +A + + RP + + A L + P + V F S+ + E Sbjct: 41 RPFAVAAIAADEPVGGAGRPVLAVTATTREADDLAAALGCLIPADQVAVFPSW-ETLPHE 99 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVE 288 PR+DT + + + R+ H R+ ++V+ V + G+G +E Sbjct: 100 RLSPRSDTVGRRLAVLR----RLAHPDAADSQGRHGPLRVIVAPVRSLLQPQLKGLGELE 155 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 V+L GD + ++L L Y R D+ RG F V G +++FP E A Sbjct: 156 P-----VRLAAGDEADLEDLARRLTDLAYARVDLVTKRGEFAVRGGILDVFPPTDEHPA- 209 Query: 349 RVSMFGNDIEEISEF 363 RV +G+++EEI F Sbjct: 210 RVEFWGDEVEEIRTF 224 >gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1] gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1] Length = 415 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL E+ ++V +H + ER IIR +R G++ +V +L G+D+P Sbjct: 259 TKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 318 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 319 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 344 >gi|196003500|ref|XP_002111617.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens] gi|190585516|gb|EDV25584.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens] Length = 651 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 N+ ++G+ R ++ V TK A DL + + + V+ +HS++ +R EII R+GK Sbjct: 318 NIIEEEGIQRSVVFVTTKVEANDLAQKINGFGLPVKPLHSDLSQNKREEIIEAFRVGKLK 377 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 +V ++ GLDIPE LV + GF + GR R S V + Sbjct: 378 AIVATDVAARGLDIPETDLVIQVAPPPNGF----DFYVHRTGRTGRAGRSGVAV 427 >gi|61657377|emb|CAI44294.1| primosomal protein N [Thermotoga naphthophila RKU-10] Length = 748 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 591 TKRMAEDLTEYLYERNI-RV-RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 T+++ +L Y R I RV R + V LE I L G D+LVG L+ +GL + Sbjct: 518 TEKVERELKRYFPARRIARVDREVIDNVMELE--SYIDKLIRGDIDILVGTRLITKGLSV 575 Query: 649 PECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYA----DTITK 695 PE GLV I+D D F LR+ ++Q +GRA+R K I+ DTI K Sbjct: 576 PEIGLVCIMDVDSLIFNPDYSSSLRTFQLIVQALGRASRGDQGKAIIQTYNSEDTIIK 633 >gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans DSM 20731] gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans DSM 20731] Length = 1092 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 17/210 (8%) Query: 173 LLGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 L G+TGS K + + E +Q +P +++ N+ E +F+P A+ + Sbjct: 31 LTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLAMR------E 84 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVES 289 Y + DT NEQ+ R +A ++ + I+ ++ + I + ES Sbjct: 85 LYPASLIHGQVDTR-------NEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLPQPES 137 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + ++L +G +EQ ++ LVK Y+R + G V GD +++FP + +D + R Sbjct: 138 LVRENLKLAVGQEIEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKD-SVR 196 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F N I+ + F T + I + + I Sbjct: 197 IEWFDNTIDAMKRFDLDTQRSIGTISQVGI 226 >gi|227510665|ref|ZP_03940714.1| ATP-dependent DNA helicase/translocase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190317|gb|EEI70384.1| ATP-dependent DNA helicase/translocase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 442 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 11/146 (7%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 + + IN +Q R LL V R ++ L + NI Y+ +R+E + + Sbjct: 296 KSILQMINRLVKQKQRFLLFVPRIRDLTLVSSALEKANINCTYLTVYSADPQRLEKVTAM 355 Query: 629 RLGKFDVLVGINLLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV---NS 684 R D L+ +L G+ P G+ V +L AD E F S ++L+Q GR RN Sbjct: 356 RSQAVDFLITTTILERGVTFP--GIDVMVLKADDEVF--SASALVQIAGRVGRNSARPTG 411 Query: 685 KVILYADTITKSIQLA---IDETTRR 707 +VILY +T +K+I+ I E RR Sbjct: 412 QVILYCETKSKTIKSCDRQIKEMNRR 437 >gi|325693569|gb|EGD35488.1| DNA helicase RecG [Streptococcus sanguinis SK150] Length = 671 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAKVALLHGKMKSEEKEAIMQDFKEGQTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201] gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201] Length = 1254 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 25/166 (15%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI--------NEQIDR 257 A +L + ++ P + F S+ + E PR+DT ++ S + +EQ R Sbjct: 88 AEELQAALGSYLPSEQIANFPSW-ETLPHERLSPRSDTVGQRLSVLRRLERTDPSEQPLR 146 Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 + + RS+L+ + G+G +E V L+ G + ++L+ L Y Sbjct: 147 VVVAPVRSVLQ----------PVVAGLGQMEP-----VTLRTGQDYDFQQLVVELAGAAY 191 Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 R D+ RG F V G I++FP ED R FG++++E+ F Sbjct: 192 SRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRWF 236 >gi|162329381|ref|YP_001604182.1| putative helicase [Acidianus filamentous virus 6] gi|157310758|emb|CAJ31578.1| putative helicase [Acidianus filamentous virus 6] Length = 564 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 V+ +R+ A+ L+E L E I ++ S K ER+ I +L+ GK L+ +L EGL Sbjct: 433 VIVRRISTAKKLSEMLNENGISSDFVTSMTKLEERMRKIENLKNGKIQTLIATSLADEGL 492 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 DIP L+ +L K S+ L+Q +GR R K Sbjct: 493 DIPNLRLIVLLSQGK-----SRIKLVQRVGRVMRPAKDK 526 >gi|327458866|gb|EGF05214.1| DNA helicase RecG [Streptococcus sanguinis SK1057] Length = 671 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAKVALLHGKMKSEEKEAIMQDFKEGQTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT] gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT] Length = 1148 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 132/309 (42%), Gaps = 41/309 (13%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 + V +G+ F++A V ++ P +V+ A +L + ++ Y + Sbjct: 30 ISVLDAGRGFSLAAVYRKLKCPMLVITSQPERARELLEQ-------------IAAYSGEE 76 Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSAT-RSLLERNDC-IVVSSVSCI---YGIGS 286 P ++P Y S N +++MR + + D I+V++V + Y Sbjct: 77 P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARIIVTAVPALLQRYIFPK 135 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 V + Q VQ+ G E + L+ + Y+++ I + GT+ G ++IFP H ED Sbjct: 136 V--FEQSFVQVWTGLETEPQNLICHFQQLGYRQESIVEMPGTYSHRGGILDIFP-HTEDN 192 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ FGN +E + F P + + + V N ++P + + ++ELK + Sbjct: 193 PVRLEFFGNTLESLRNFDPQSQRSGKQV-------NELTISPASEIFHLGQLPRQELKNK 245 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 L L + E R ++ D+ L+ + E ++ P ++ +Y+P Sbjct: 246 LDALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFA-------PLFNTSSILDYLP 295 Query: 467 EDSLLFVDE 475 D+L+ +DE Sbjct: 296 ADALVVLDE 304 >gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum] gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum] Length = 397 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ + LTE + E N V MH ++ ER EII+ R Sbjct: 255 DIYDSLTIT-----QAVIFCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFR 309 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++L G+D+ + LV D D+E +L IGR+ R Sbjct: 310 SGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYLHR-------IGRSGR 355 >gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158 str. F0412] gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158 str. F0412] Length = 1055 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 46/267 (17%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 R+ ++ G++GS K+F + + + +P +++ +K + F P+ V F Sbjct: 24 RKGKSVIYGLSGSQKSFLLNQAFTTGLTKPVVIVVHDKDHKEMWERDLAFFMPNVPVLSF 83 Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 P TD + S+ +Q +MR A LL + VV Sbjct: 84 -------------PITDHVDFTTVARSLEDQGAQMRALA---LLAWQEPAVV-------- 119 Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I + E +Q +V + D++E+ L LV Y+R D RG F V G Sbjct: 120 IANAEEVTQYVVSPQYLKGQSLHFALNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D ++I+P + D R+ FG++I+ + F+ + Q R++E I Y + + + + Sbjct: 180 DILDIYPVN-SDNPIRIEFFGDEIDTL-RFFAVGNQ--RSIEQIDSYTVTPFFLGKSDAD 235 Query: 394 -TAMKYIKEELKMRLIELEKEGRLLEA 419 T + Y+K+ L + ++ GR+ EA Sbjct: 236 STLLSYVKDGLLI----YDEPGRIQEA 258 Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 ++R H ++ + EI+ D G +DVL+ +++ GLDIP + I DAD+ G Sbjct: 783 DLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841 >gi|281412237|ref|YP_003346316.1| primosomal protein N' [Thermotoga naphthophila RKU-10] gi|281373340|gb|ADA66902.1| primosomal protein N' [Thermotoga naphthophila RKU-10] Length = 736 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 591 TKRMAEDLTEYLYERNI-RV-RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 T+++ +L Y R I RV R + V LE I L G D+LVG L+ +GL + Sbjct: 506 TEKVERELKRYFPARRIARVDREVIDNVMELE--SYIDKLIRGDIDILVGTRLITKGLSV 563 Query: 649 PECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYA----DTITK 695 PE GLV I+D D F LR+ ++Q +GRA+R K I+ DTI K Sbjct: 564 PEIGLVCIMDVDSLIFNPDYSSSLRTFQLIVQALGRASRGDQGKAIIQTYNSEDTIIK 621 >gi|332363900|gb|EGJ41679.1| DNA helicase RecG [Streptococcus sanguinis SK355] Length = 671 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKDAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] Length = 767 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA + L+ V T+ AEDLT L R + + +V ER +++ LR G DVL Sbjct: 361 LAVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVL 420 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLD+ GLV D +E + + IGR R Sbjct: 421 VATDVAARGLDVDRIGLVVNFDVPRE-----TDTYVHRIGRTGR 459 >gi|152986338|ref|YP_001347232.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa PA7] gi|150961496|gb|ABR83521.1| probable ATP-dependent DNA helicase [Pseudomonas aeruginosa PA7] Length = 1448 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 9/132 (6%) Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612 PPV + + + E VYD + A + L+ V T+RMAE +T +L ER + RV Sbjct: 262 PPVALEAVMSNDAWELVYDRLACLAGEHRTTLVFVNTRRMAERVTRFLAERLGSQRVAAH 321 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H + R++ + L+ G+ VLV L G+DI + LV L + RS + + Sbjct: 322 HGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP-----RSIAAFL 376 Query: 673 QTIGRAARNVNS 684 Q +GR+ +V Sbjct: 377 QRVGRSGHSVGG 388 >gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311] gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311] Length = 1180 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/311 (22%), Positives = 141/311 (45%), Gaps = 41/311 (13%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 R++ L+ G + + + + M +P +V+ P A + + + A Y Sbjct: 25 RDQRLLMRGAGRAARALVASALARRMDQPLLVVVPTLEEAGRWTALLELMGWSRAQLYPT 84 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284 S Y+P + T+ + ++E Q DR ++D +V++ C+ + Sbjct: 85 SEGSPYEP--FDSTTEITWGQLQVLSELQTDR----------SKSDLAIVATERCLQPHL 132 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 ++ ++ LK GD V+ +EL + L + Y+R GT+ GD ++++P E Sbjct: 133 PPPQTLAEHCRALKKGDLVDLEELSTYLSQLGYERVSTIDQEGTWSRRGDIVDVYPVSSE 192 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 + R+ FGN+++++ EF P + + + V+T+K+ TP + ++E++ Sbjct: 193 -LPVRLEFFGNELDKLREFDPASQRSLDAVDTLKL-------TPTGFSPLIAEGLREQVP 244 Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 L +L L EAQ IT E+LE G+ + + R L G + P +L +Y Sbjct: 245 DDLDQL-----LSEAQ-----IT---ELLEG-GTPEGM----RRLMGLA-WDAPASLLDY 285 Query: 465 IPEDSLLFVDE 475 +P + + +DE Sbjct: 286 LPAECCIAIDE 296 >gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1179 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLGV G+ + ++A + RP ++++ ++ A Q + + + +E V Y+ Sbjct: 26 QLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSL-----LEDLV--YN 78 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGS 286 + E+ I E +I+ R++ T L+ I+V V+ + G + Sbjct: 79 FPAEES--------IATEMAISSSELRLQRVQTLLALKTEKPIIV--VTSLAGAERLVPK 128 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +S Q + +K+GD+ + ++L+ Y + I G F G ++++P +D Sbjct: 129 KQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQIPGEFAHRGSIVDVYPITFDD- 187 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ F N+++++ F T + + + I I + ++ + A I+ Sbjct: 188 PIRLDFFDNELDQLKSFDVATQKSTTSFDEINIDPATDFIVSEHQYDQAKLAIETAFSDY 247 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 I L ++ + ML ++ Y+ + + TL +Y P Sbjct: 248 RINLSG----VDKKHATDGFAPTQYMLNERERGSALVPYAPFFF-----DGQTTLLDYFP 298 Query: 467 EDSLLFVDE 475 DSL+ +DE Sbjct: 299 TDSLIIIDE 307 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 30/115 (26%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERI--------------------------EIIR 626 ++ D E RN +V Y+H+ V L+RI I+ Sbjct: 815 KIVRDAIEKEIARNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILY 874 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 D G++DVLV ++ G+DIP + + +AD G L Q GR R+ Sbjct: 875 DFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGL----AQLYQLRGRVGRS 925 >gi|327489060|gb|EGF20855.1| DNA helicase RecG [Streptococcus sanguinis SK1058] Length = 671 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|294951949|ref|XP_002787179.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239901883|gb|EER18975.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 479 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+ S + + +D + +G RI++ TK+ A+ LT + N +H + + Sbjct: 293 VEVVSEMDKRQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQ 352 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ D + G+ +VLV ++ + GLDI V D K + I GRA Sbjct: 353 RERDRILNDFKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPKT--VEDYVHRIGRTGRA 410 Query: 679 ARNVNSKVILYADTITKS-IQLAID 702 NS + DT T +++A D Sbjct: 411 GAVGNSLTFITNDTHTPDRVRMAKD 435 >gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA] gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA] gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400] Length = 1157 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+ GS + +A++I P +V+ P+ AA+L +E + FF + + Sbjct: 25 LAGLRGSSPAYLLARLIGEAGAPFLVVVPDAEAAAELTTELR-FFTGRPGDILL------ 77 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 P DT +++S + + R + R L +R VV++ E+ Q Sbjct: 78 -----FPAWDTSPFEKASPHADVTAQRLAVLRRLADRRAAAVVTTP---------EALRQ 123 Query: 293 MIVQLKIGDSV----------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 +V + DS ++ +LLS LV Y + RGTF V G ++IFP Sbjct: 124 RVVPRSLLDSASLYFLPGEESDRDDLLSRLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPG 183 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLT 367 D+ R+ FG+ ++ I F PL+ Sbjct: 184 F-DLPVRIEFFGDFVDTIRSFEPLS 207 >gi|327461775|gb|EGF08106.1| DNA helicase RecG [Streptococcus sanguinis SK1] Length = 671 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC 700641] gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC 700641] Length = 1170 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 76/358 (21%), Positives = 149/358 (41%), Gaps = 60/358 (16%) Query: 271 DCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 + IV+++VS + + ++ S MI +G+ EL +L+ Y++ +G F Sbjct: 117 EGIVIANVSGSRLLLPNPKTVSSMIQSFSVGEEKNLTELKDTLLAMGYQKVSQVSQQGEF 176 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 + GD +++F + +D +R+ FG++I+ I F P T + ++N++TI ++ S + + Sbjct: 177 SLRGDIVDLFEAS-QDFPYRMEFFGDEIDGIRTFSPETQRSLKNLDTITVHPVSDMLLTK 235 Query: 390 PTLNTAMKYIKE--------ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441 K +++ E K L E+ L EA QR+ D + Q+ Sbjct: 236 DDFLRGQKNLEKLIQKSPNPEFKSYLTEV-----LTEAHH--QRLHADSRKFLSLFYQQT 288 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRK 494 TLF+Y+P+ + +F+D+ + + Q ++ + D + Sbjct: 289 Y-----------------TLFDYLPKHAPVFLDDYYKIMDQETRFDVEVANLLTEDLQKS 331 Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 + AE + DN L +P + + G L Q Sbjct: 332 RSFAEAQY----FADNSAL----LRTYKPASYFSNFQKGLGNLRFDALYSFNQY------ 377 Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 P E S T ++ DEI+ +Q ++L V +K+ + L E+L + I + Y+ Sbjct: 378 --PMQEFFSQFTLLK---DEIDRFRKQDYTVILQVTSKQGFQQLQEHLRDYGIDLDYL 430 >gi|125717410|ref|YP_001034543.1| ATP-dependent DNA helicase RecG [Streptococcus sanguinis SK36] gi|125497327|gb|ABN43993.1| ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative [Streptococcus sanguinis SK36] Length = 671 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|324993503|gb|EGC25423.1| DNA helicase RecG [Streptococcus sanguinis SK405] Length = 671 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl] Length = 463 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 581 QGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 QGL R ++ V TK+ A+ LT L + N+ +H + ER E + D R GK +VLV Sbjct: 277 QGLGIERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNVLV 336 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692 N+ GLDI V I D + + IGR R N K I + DT Sbjct: 337 ATNVAARGLDIENVQHVIIYDLSD-----NIEEYVHRIGRTGRCGNVGKAITFFDT 387 >gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus 273-4] gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus 273-4] Length = 567 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ TKR E L + L E + ++H ++ +R I++DLR GK +LV ++ Sbjct: 286 QIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVAA 345 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLD+P L +++ D R + IGR R + V + Sbjct: 346 RGLDVPA--LSHVINYD---LPRQTEDYVHRIGRCGRAGRTGVAI 385 >gi|332365660|gb|EGJ43418.1| DNA helicase RecG [Streptococcus sanguinis SK1059] Length = 671 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|85708238|ref|ZP_01039304.1| possible helicase [Erythrobacter sp. NAP1] gi|85689772|gb|EAQ29775.1| possible helicase [Erythrobacter sp. NAP1] Length = 1031 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 14/115 (12%) Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 R+++ K AE+L + E N R+ +HS T R II D++ G +D++V +++ Sbjct: 310 RMMVRASGKNEAEELFKLYSEWFPNERIVLVHS--GTTNRKSIISDIKAGMYDIIVCVDM 367 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-----SKVILYAD 691 L+EG D P+ + A+ K S + L+Q IGR AR + S V+ +AD Sbjct: 368 LKEGFDFPDLKIAAVHSVHK-----SLSVLLQFIGRFARTQDGLGDASFVVNFAD 417 >gi|14590143|ref|NP_142208.1| hypothetical protein PH0210 [Pyrococcus horikoshii OT3] gi|3256596|dbj|BAA29279.1| 444aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 444 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 8/102 (7%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A+QG R+L+ V E L + L +R I ++ S+ + R EI+ + G+ VLV Sbjct: 311 AKQGHRVLIDVKRIDHGEILVKMLRDRGINAEFLSSQ--SPNRWEILEKYKKGEIPVLVS 368 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LL+EG+DIPE + + K S IQTIGRA R Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDVMTIQTIGRALR 404 >gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032] gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032] Length = 1232 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP + + A L + + P V F S+ + E PR+DT + + + Sbjct: 77 RPVLAVTATSREAEDLVAALGSLLPAEQVAIFPSW-ETLPHERLSPRSDTVGRRLAVLR- 134 Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306 R+ H R +VV+ V + G+G +E V+L GD + + Sbjct: 135 ---RLAHPDATDAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VRLSAGDEADLE 186 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++ L Y R D+ RG F V G +++FP E + RV +G+++EEI F Sbjct: 187 QVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 242 >gi|325690294|gb|EGD32298.1| DNA helicase RecG [Streptococcus sanguinis SK115] Length = 671 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp. aureus ED133] Length = 1168 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + G I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N++ + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIKEVDITTASDYIITEEVI----RHLKEELKSA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|325688114|gb|EGD30133.1| DNA helicase RecG [Streptococcus sanguinis SK72] Length = 671 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 6/101 (5%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P ++ I Sbjct: 487 ELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATVMVI 545 Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 +DAD+ G + L Q GR R N S +L A+ T+S Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGNKQSYAVLVANPKTES 582 >gi|332360531|gb|EGJ38341.1| DNA helicase RecG [Streptococcus sanguinis SK1056] Length = 671 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f. nagariensis] gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f. nagariensis] Length = 622 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G RI++ TKRM + L+ Y R R +H + K ER +++ + G+ +LV ++ Sbjct: 370 GTRIIIFCTTKRMCDQLS-YQMSREFRAAAIHGDKKQSERDYVLQAFKDGRTPILVATDV 428 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP V D F I IGR R Sbjct: 429 AARGLDIPNVAAVVNFD-----FPTGTEDYIHRIGRTGR 462 >gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222] gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222] Length = 1153 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 LKG ++ + L+G S T+AK+ E ++ P+ +A +L SE + F H Sbjct: 12 LKGAGDKKHIGNLVG---SSLALTIAKLAEQHNSHTLLAVPDPQIALKLQSEIEQFTAHE 68 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 V+ + ++ Y D++ + I+++I R+ +L D I + +S Sbjct: 69 -----VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114 Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + S + Q + +K GD ++L L K Y+ D G + G +++F Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 P +D +R+ F ++I+ I F P + I ++ I++ + PT TA++ Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFEPENQRSIEDISEIRLLPAHEF----PTSETAIE 227 >gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis carolinensis] Length = 924 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + G F VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTHKDSNFAGD 612 >gi|158521716|ref|YP_001529586.1| transcription-repair coupling factor [Desulfococcus oleovorans Hxd3] gi|158510542|gb|ABW67509.1| transcription-repair coupling factor [Desulfococcus oleovorans Hxd3] Length = 1174 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 130/304 (42%), Gaps = 41/304 (13%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-PHNA---VEYFVSYYD 230 GV F ++++ + + P +V+ + AQ ++E FF P +A V F SY Sbjct: 28 GVGKGADAFMVSRIGQTLNVPVLVVTASA-REAQRFTEDARFFQPADARAEVALFPSYTV 86 Query: 231 Y-YQPEAYVPRTDT-YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 Y+P AY RT I+ ++E + A L+ D ++ ++ G + Sbjct: 87 MPYRPVAYHNRTAAERIQLLYGMSEGL------APAVLVLAVDALLQKTIPP----GDLC 136 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 ++Q + + G+S++ L LV Y R I G F + G +++F S + Sbjct: 137 EFAQTVSE---GESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRGGIVDLF-SPFHEAPA 192 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ +FG+ +E I F P+T ++ R I + V + + + +K+ R Sbjct: 193 RIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIGRLIAAVKK----RSA 248 Query: 409 ELEKEGRLLEAQRLEQRITYD-LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467 EL L ++ D ++ +E + +E+ + E P TLF+Y+P Sbjct: 249 ELN----------LPVSVSRDIIDRMEQGTDTEGMESLMPLVY-----ETPATLFDYLPG 293 Query: 468 DSLL 471 +LL Sbjct: 294 KTLL 297 >gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] Length = 552 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ TKR E L + L E + ++H ++ +R I++DLR GK +LV ++ Sbjct: 280 QIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILVATDVAA 339 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP V D R + IGR R Sbjct: 340 RGLDIPAISHVINYD-----LPRQTEDYVHRIGRCGR 371 >gi|324995182|gb|EGC27094.1| DNA helicase RecG [Streptococcus sanguinis SK678] gi|327469130|gb|EGF14602.1| DNA helicase RecG [Streptococcus sanguinis SK330] gi|327473512|gb|EGF18932.1| DNA helicase RecG [Streptococcus sanguinis SK408] Length = 671 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|166714773|gb|ABY88099.1| UvrB [Stenotrophomonas sp. ICB91] Length = 60 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 35/54 (64%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN+ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRIELFDGEVEKITMFDPLTGETLRNLMRFTVYPKTHYATTR 55 >gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum] Length = 656 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A +GL L+ V TKR A DL +L N V +H ++K ER + R G+ +VLV Sbjct: 365 ANKGL-TLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFERERHLEMFRTGEANVLVA 423 Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 + GLDIP V D +D + ++ +T + +G+A N K Sbjct: 424 TAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNVGQATSFFNDK 474 >gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7] gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7] Length = 1148 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 67/319 (21%), Positives = 128/319 (40%), Gaps = 46/319 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + +R +++ + A +L E + F P V +F + YD Sbjct: 21 LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + I + + Q+ ++RH +VV + ++ + Sbjct: 81 FSPHQDI------ISQRIAALYQLPQLRHG----------VLVVPISTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L IG ++ + + L Y+ D G F V G I++FP E + +R+ Sbjct: 125 GSSLVLDIGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE+I++ + P A+ + Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 GR E ++ R + L + + IE Y E TLF+Y+P+D+ + Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281 Query: 472 FVDESHVTIPQISGMYRGD 490 F S I Q + + GD Sbjct: 282 F---SLPGIEQAAEQFWGD 297 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H+EVKT+E+ E++ + R+G +F+VLV Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907 >gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6] gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6] Length = 1128 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 17/180 (9%) Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 N+ A ++Y +F+ F P V YY PR D + + R R Sbjct: 59 NERKAREIYEDFRLFDPE------VMYY---------PRRDLIFYQADISGNLLTRQRMQ 103 Query: 262 ATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 ++L+E+ V++S C+ + + + ++L G + +L L Y+R Sbjct: 104 VIKALMEQKKVTVITSTGGCMDRLLPLRVLEKYTLKLSAGTEIPLSDLAEKLTSMGYERV 163 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 G F + GD ++I+ S E++ WR+ + + ++ I F P + + + N+E I IY Sbjct: 164 VQVESAGQFAIRGDIVDIY-SLTEELPWRIEFWDDLVDGIRCFDPESQRSVENLEEIMIY 222 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V Y H ++K E +++ G+ DVLV ++ G+DI + I DAD+ G Sbjct: 818 VEYAHGKMKETELEQLMYRFINGEIDVLVATTIIETGMDISNVNTMVICDADRLGL---- 873 Query: 669 TSLIQTIGRAAR-NVNSKVIL 688 + L Q GR R N NS L Sbjct: 874 SQLYQLRGRVGRSNRNSYAFL 894 >gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110] gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110] Length = 1160 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284 VS+Y + Y P + ES + ++ + S+ E N+ +V++ + + Sbjct: 79 VSFYPTTEASPYEP-----LNPESEMIWGQMQVLSNLNLSVTENNNYAIVTTEKALQPHL 133 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 ES+ + + L+ G + + K +LVK Y+R ++ + G + GD ++IFP E Sbjct: 134 PPPESFHKYCLNLQTGITEKSKIFDEALVKLGYERVNLVEVEGQWSRRGDIVDIFPVSSE 193 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 V R+ FG+++E+I EF P T + + ++E+I Sbjct: 194 -VPIRLEWFGDELEKIREFDPATQRSLDSIESI 225 >gi|315230174|ref|YP_004070610.1| hypothetical protein TERMP_00410 [Thermococcus barophilus MP] gi|315183202|gb|ADT83387.1| hypothetical protein TERMP_00410 [Thermococcus barophilus MP] Length = 454 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 8/114 (7%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A++G R+L+ V E L + L ER + ++ S+ + R EI + G+ VLV Sbjct: 311 AKEGHRVLIDVRRIDHGEILVKMLKERGVNAEFLSSQ--SPNRWEIFEKFKKGEIQVLVS 368 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692 LL+EG+DIPE + + K S IQTIGRA R + + + D Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALRPKDGREAVIVDV 416 >gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica] Length = 962 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 QG R L+ V TK A+ L L I+ +H + + +R + I DL+ + VLV + Sbjct: 782 QGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRMHVLVATD 841 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + G+DI + +V D F + S I IGR AR Sbjct: 842 VAARGIDIDDVEVVINFD-----FPKELESYIHRIGRTAR 876 >gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1] gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1] Length = 1163 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 19/193 (9%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQP 234 + M+ + A ++ A+ +AP+ + + F P V F ++ YD P Sbjct: 22 GAQPLVMSDLARAAKKRAVFIAPDDAAMRSVAEAARFFAPEVEVLEFPAWDCLPYDRASP 81 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294 V ++ + R++H +T S L +V + + + + + + + Sbjct: 82 ALSV---------SAARLSALFRLQHPSTGSQL-----LVTTINAVLQRVLTPFRIRESV 127 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 K G ++ + L + L +Q Y R D + G F V G ++IFPS L D R+ FG Sbjct: 128 RGFKPGTTIGHESLAALLTRQGYTRTDTVVDHGEFAVRGSIVDIFPSSL-DEGLRLDFFG 186 Query: 355 NDIEEISEFYPLT 367 +++E + F P T Sbjct: 187 DELESLRLFDPST 199 Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%) Query: 135 SKDITFFQMQTDYHP---SGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTM--AKV 188 ++D +F Q D P + DQ AAIA +L+ + S + + +L+ G G GKT A Sbjct: 591 AEDASFNQF-VDRFPWEETDDQDAAIADVLRDLESGKPMDRLVCGDVGFGKTEVALRAAF 649 Query: 189 IEAMQ-RPAIVMAPNKILAAQLYSEFKNFF 217 + AM + V+AP +LA Q Y FK F Sbjct: 650 VAAMSGKQVAVVAPTTLLARQHYENFKQRF 679 >gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp. hominis C80] gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp. hominis C80] Length = 1169 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 65/311 (20%), Positives = 134/311 (43%), Gaps = 37/311 (11%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G++ S K +A+ + +++ N A +L ++ + H+ V Y Y Sbjct: 28 LVTGLSPSAKATIIAEKYLNNDKQMLLITNNLYQADKLETDILQYIDHSEV------YKY 81 Query: 232 YQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 P D E+ S+ + Q+ +R+R + T ++ +V + VE Sbjct: 82 -------PVQDIMTEEFSTQSPQLMSERVR-TLTALSHDKKGLFIVPLNGLKKWLTPVEL 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + L++GD ++ E L+ LV Y+R+ + G F + G I+I+P + V R Sbjct: 134 WKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQPV--R 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ I +F T + NVE + I S Y+ +N +++ + + Sbjct: 192 IELFDTEVDSIRDFDVETQRSNDNVEKVDITTASDYIITEDVINHLQTELQKAYEQTRPK 251 Query: 410 LEKEGR-----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++K R E+ +L + +D ++L + + P TL +Y Sbjct: 252 IDKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DTPSTLIDY 297 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 298 FQKDAIVVVDE 308 >gi|16753109|ref|NP_445687.1| putative helicase [Sulfolobus islandicus filamentous virus] gi|81997297|sp|Q914K8|Y022_SIFVH RecName: Full=Putative helicase 22 gi|16751779|gb|AAL27733.1| putative helicase [Sulfolobus islandicus filamentous virus] Length = 559 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 589 VLTKRMA--EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 V+ +R+A + L E + E I ++ S+ K ER+E I L+ K VL+ +L EGL Sbjct: 428 VIVRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNEKLQVLISTSLADEGL 487 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 DIP LV +L K S+ LIQ IGR R Sbjct: 488 DIPNLRLVVLLTQGK-----SRIKLIQRIGRVMR 516 >gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65] gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65] Length = 449 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 15/136 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK E +L N+ V Y+H ++ ER ++ +R G+F VLV ++ GLDI Sbjct: 254 TKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVATDVAARGLDIQS 313 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 LV D RS + IGR R A+ +I L ID T + Sbjct: 314 IDLVINFD-----MARSGDDYVHRIGRTGR---------AEASGSAISL-IDHTEWNLKA 358 Query: 711 QLEHNKKHNINPQSVK 726 +E + N+N + VK Sbjct: 359 AIERYLRVNMNHKYVK 374 >gi|301778989|ref|XP_002924913.1| PREDICTED: interferon-induced helicase C domain-containing protein 1-like [Ailuropoda melanoleuca] gi|281343300|gb|EFB18884.1| hypothetical protein PANDA_014321 [Ailuropoda melanoleuca] Length = 1019 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 24/169 (14%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYMH-------SEVKTL---ERIEII 625 ++ R ++ T++ A L++++ E + V+ H SE K + E+ E+I Sbjct: 709 EESARGIIFTKTRQSAYALSQWITENKKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 768 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR AR S Sbjct: 769 SKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-ARADEST 822 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEV 732 +L A + + I+ I REK + H N+NP+ KI+E+ Sbjct: 823 YVLVAHSNSGVIEREI--VNDFREKMMYKAIDHVQNMNPEEYARKILEL 869 >gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM 20109] gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM 20109] Length = 1214 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP +V+ A +L + + + P + V S+ + E PR+DT + + Sbjct: 61 RPLVVVTATGRDADELAAALRCYLPDDDVAVLPSW-ETLPHERLSPRSDTVARRVAVFR- 118 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSL 312 R+ H ++V V + V+ +++ V+++ G V+ +L L Sbjct: 119 ---RLAHPDPEPGPTGAVRVLVLPVRALLQ-PVVDGLGELVPVEVRTGQQVDLDDLAQRL 174 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 V Y R D+ RG F V G +++FP ED RV ++G D+EEI F Sbjct: 175 VDAAYTRVDMVERRGEFAVRGGILDVFPP-TEDHPLRVELWGEDVEEIRWF 224 >gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus H19] gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp. aureus H19] Length = 1168 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 93/191 (48%), Gaps = 15/191 (7%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L++G+ ++ + L+ LV YKR+ + G F + I+IFP E + Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRAGIIDIFPLIGEPI 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E + I S Y+ + +++KEELK Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243 Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464 ++ ++ R + + TY+ ++ E+T Q + ++ E P T+ +Y Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296 Query: 465 IPEDSLLFVDE 475 +D+++ VDE Sbjct: 297 FQKDAIIAVDE 307 >gi|162329311|ref|YP_001604365.1| putative helicase [Acidianus filamentous virus 3] gi|157310688|emb|CAJ31513.1| putative helicase [Acidianus filamentous virus 3] Length = 564 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 V+ +R+ A L+E E I Y+ S+ ER++ I +L+ GK L+ +L EGL Sbjct: 433 VIVRRISVARKLSEMFNENGIIADYVTSQTTLEERMKKIENLKNGKIQTLIATSLADEGL 492 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 DIP L+ +L K S+ L+Q IGR R Sbjct: 493 DIPNLRLIVLLSQGK-----SRIKLVQRIGRVMR 521 >gi|325696972|gb|EGD38859.1| DNA helicase RecG [Streptococcus sanguinis SK160] Length = 671 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+LT Y + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P + Sbjct: 484 LEEELTAY-FGHQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC 700779] gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC 700779] Length = 1167 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/233 (20%), Positives = 108/233 (46%), Gaps = 13/233 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +LLLG++GS K+ +A ++ Q +VM A +L ++ + + V Y Sbjct: 30 ELLLGLSGSAKSLAIASSVKN-QNKILVMTSTYGEADRLVNDLISILGTDMV------YP 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 + ++ P + + + I +++ +R +S + +V + + + + + Sbjct: 83 FLVDDS--PMVEFLVSSQEKIFSRVEALRFLRDKS---QKGILVCNMAASRLFLPDPQVF 137 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 +++L++G+ EQ+EL + L+ YK+ +G F + GD ++IF + + +R+ Sbjct: 138 DNSVLKLEVGEECEQRELKNQLISLGYKKVTQVQSQGEFSLRGDILDIFETS-QLSPYRI 196 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 FG++I+ I EF T + + IY S + N ++++ E+ Sbjct: 197 EFFGDEIDGIREFDADTQLSKDSQSQVLIYPASDILLTVEDYNRGQQFLEHEI 249 >gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] Length = 1165 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 138/307 (44%), Gaps = 33/307 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +G+ K +A E + + +V+ + + +L S+ + + V Y Sbjct: 26 QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 ++ + VP + SS+++ I R+ SA R L E+N ++ S + + E Sbjct: 80 FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +S+ + +IG +L +LV Y++ G F GD ++IF ++ + Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG++I+ I +F T + ++ +E+++I + A K + Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EG L+ A +++ Y E+L TT + + R+L+ E + +YIPE Sbjct: 243 ----EGYLVTASEVQR--AYLSEVLSTTENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294 Query: 469 SLLFVDE 475 + LFVD+ Sbjct: 295 TPLFVDD 301 >gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae] Length = 785 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V TKR A+ L YL + +H + ER E + D R G+ VLV ++ Sbjct: 590 RVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVATSVAA 649 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692 GLDIP+ +V D S + IGR R N+ K I + D+ Sbjct: 650 RGLDIPKVMVVVNYD-----LPSSIDEYVHRIGRTGRVGNTGKAISFYDS 694 >gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1168 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/210 (20%), Positives = 94/210 (44%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T + +++ RP +++ A QL S+F N + + F Sbjct: 17 QLITGISGSARTLLIDNLLKTTTRPVVMVVDTLFHADQLVSDFSNLLEDDQIFEF----- 71 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P + + ++ + + R A L+ ++V+SVS + + S + Sbjct: 72 --------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPSPDQ 123 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 +S + + + + ++L L + Y Q + G F + G +++FP + +D R Sbjct: 124 FSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDPV-R 182 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F +++ + F + I+ ++TI+I Sbjct: 183 IDFFDTEVDSMRLFDVSNQRSIKTIDTIQI 212 Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y+H ++ + +I+ D G++DVLV ++ G+DIP + + +AD G L Sbjct: 845 DARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMG-L 903 Query: 666 RSKTSLIQTIGRAAR 680 L IGR++R Sbjct: 904 SQLYQLRGRIGRSSR 918 >gi|322386106|ref|ZP_08059743.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100] gi|321269875|gb|EFX52798.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100] Length = 671 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+L Y + +V +H +K E+ I++D + GK D+LV ++ G+++P + Sbjct: 484 LEEELKAY-FANQAQVALLHGRMKNDEKEAIMQDFKDGKTDILVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R N S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGNKQSYAVLVANPKTES 582 >gi|315655508|ref|ZP_07908407.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333] gi|315490163|gb|EFU79789.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333] Length = 816 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RIL TV + A LT RNI + HS + + + + + D G+ +LV ++ Sbjct: 596 RILHTV--TQTAAQLTALPIFRNIPIGVAHSNLDSGAKQQAVSDFAAGRTPLLVSTTVVE 653 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+D+PE ++ ILDAD+ G + L Q GR R V L Sbjct: 654 VGMDVPEASMMIILDADRYGI----SQLHQLRGRIGRGSRPGVCL 694 >gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119] gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119] Length = 1169 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 69/311 (22%), Positives = 138/311 (44%), Gaps = 37/311 (11%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G++ S K +A+ + +++ N A +L ++ + H+ V Y Y Sbjct: 28 LVTGLSPSAKATIIAEKYLNDDKQMLLITNNLYQADKLETDILQYIDHSEV------YKY 81 Query: 232 YQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 P D E+ S+ + Q+ +R+R + T ++ +V + VE Sbjct: 82 -------PVQDIMTEEFSTQSPQLMSERVR-TLTALSHDKKGLFIVPLNGLKKWLTPVEL 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + L++GD ++ E L+ LV Y+R+ + G F + G I+I+P + V R Sbjct: 134 WKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQPV--R 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + +F +++ I +F T + N+E + I S Y+ +N L+ +L + Sbjct: 192 IELFDTEVDSIRDFDVETQRSNDNIEKVDITTASDYIITEDVIN--------HLQTKLQK 243 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFEY 464 ++ R ++++ + DL+ ET S + E+ + L R + P TL +Y Sbjct: 244 AYEQTR----PKIDKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYDTPSTLIDY 297 Query: 465 IPEDSLLFVDE 475 D+++ VDE Sbjct: 298 FQNDAIVVVDE 308 >gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551] gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551] Length = 843 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 19/167 (11%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK-------TLERIEIIRDL 628 L Q G R+++ ++ AE LT++L E R++ K E+ E + + Sbjct: 365 TLGIQDGERVIVFTESRDTAEALTDFLSESFDARRFVGQGDKEGSDGMTQKEQQETLDEF 424 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI- 687 R G+F+VLV ++ EGLD+PE LV + + + IQ GR R +VI Sbjct: 425 RNGEFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQRKGRTGRQAEGRVIV 479 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 L A+ I +RRREK+++ + + + V +++ E +D Sbjct: 480 LMAENTRDEAYFWI---SRRREKEMKSELR---DLKGVADEVEEELD 520 >gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae T7901] gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae T7901] Length = 1157 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 67/322 (20%), Positives = 130/322 (40%), Gaps = 61/322 (18%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 + SG ++ + + +V+AP+ A S+ + V ++ ++ Sbjct: 24 IGSSGAALSIVESAQNFSGNCVVVAPDMATAEIFKSDIEVLQKGRNNGRKVYLFNDWETL 83 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY--SQM 293 Y D++ + I+E++ + H L ++CI++ + S + Y S Sbjct: 84 PY----DSFSPHQDIISERMRCLYH-----LHASDNCIIIVASSTLLQRLPPTDYILSHS 134 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 +V LK+ D ++++E L Y D G F V G I+++P A+R+ +F Sbjct: 135 LV-LKVNDQLDREEFRHHLTNSGYTSVDTVYQHGEFAVRGALIDVYPMG-SRAAYRIELF 192 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 + ++ + EF P T + I VE+I++ + + +N K R E Sbjct: 193 DDSVDSLREFDPETQRTITQVESIELLPGKEFPFDKAGINA--------FKSRWYE---- 240 Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG----------EPPPTLFE 463 T+D++ +C ++ S +G +P + TLF+ Sbjct: 241 -------------TFDVDH----SACPVFQDIS---SGLSPAGVEYYLPLFFDETATLFD 280 Query: 464 YI---PEDSLLFVDESHVTIPQ 482 Y+ PE +LLFV H +PQ Sbjct: 281 YLADAPEKTLLFV---HEKVPQ 299 >gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32] gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32] Length = 1153 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 LKG ++ + L+G S T+AK+ E ++ P+ +A +L SE + F H Sbjct: 12 LKGAGDKKHIGNLVG---SSLALTIAKLAEQHNSHTLLAVPDPQIALKLQSEIEQFTAHE 68 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 V+ + ++ Y D++ + I+++I R+ +L D I + +S Sbjct: 69 -----VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114 Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + S + Q + +K GD ++L L K Y+ D G + G +++F Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 P +D +R+ F ++I+ I F P + I ++ I++ + PT TA++ Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSETAIE 227 >gi|301106548|ref|XP_002902357.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262098977|gb|EEY57029.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 829 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+R RLG+F+VLV + EGLDI E L+ DA L S +IQ +GR R Sbjct: 585 EIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDA-----LTSPVRMIQRMGRTGRKR 639 Query: 683 NSKVIL 688 +VI+ Sbjct: 640 VGRVII 645 >gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4] gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4] Length = 2680 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 13/137 (9%) Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 R G+ +LV N+L EGLD+PEC LV D + TSLIQ+ GR AR+ +S I Sbjct: 645 FRQGRIRLLVATNVLEEGLDVPECSLVIQFDG-----VIGVTSLIQSRGR-ARHRDSSFI 698 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME------VIDPILLEDA 741 ++ + K + E +R + + +N ++ E++M +DP + + Sbjct: 699 IFCSAVGKERNQRLVENEKRL-VLMANKAAARLNSKATVEELMGSYSEDMAVDPSVAANE 757 Query: 742 ATTNISIDAQQLSLSKK 758 T+ ++ A +++ K Sbjct: 758 ETSALAARATFDAMADK 774 >gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399] gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399] Length = 1094 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 21/229 (9%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFK 214 A+ +L + + S+ + L G GS K +A + RP AIV A + L A + Sbjct: 13 AVRKLSEELASQPQQILAHGCAGSLKHAALAAAYDGTPRPLAIVTAGRESLRA-WQEDLT 71 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDC 272 P D Y+ +P D + + ++R R + LL R Sbjct: 72 ALLPEA---------DVYE----LPELDYALAAVQGAAKGMERAAQRMNILGRLLRREPI 118 Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV++ + G S +S+ + L++GD++ ++ELL+ +V Y+ G F V Sbjct: 119 IVLADIGAAAQKGLSAAEFSRASLSLRLGDTLVREELLARMVGMGYEHAAEVEHVGQFSV 178 Query: 332 CGDSIEIFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G ++IFP + L + R+ F +I+ + E+ +T + I+N+ T I Sbjct: 179 RGGIVDIFPINALSPI--RIEFFDAEIDSMREYDAVTRRSIKNISTASI 225 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 23/135 (17%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RM E L + E I + LE +++ D G +D+L+ +++ G+D+ Sbjct: 776 RMREHLLRLVPEARIATAHGQMNEDILE--QVMMDFYEGHYDILLATSIIENGIDVANAN 833 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 V I DAD+ G + L Q GR R S ++A T RR+K L Sbjct: 834 TVIIYDADRFGL----SQLYQMRGRVGR---------------SAKMAFAYFTYRRDKVL 874 Query: 713 EHNKKHNINPQSVKE 727 + + Q++KE Sbjct: 875 SETAEKRL--QAMKE 887 >gi|221230362|ref|YP_002503778.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae Br4923] gi|219933469|emb|CAR71766.1| ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length = 743 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%) Query: 599 TEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 E LY R N+R+ MH + E+ + R G+ DVLV N++ G+D+P Sbjct: 544 AEGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNA 603 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694 ++ ++DAD+ G + L Q GR R + + L A ++ Sbjct: 604 TIMLVMDADRFGI----SQLHQLRGRIGRGTHPSLCLLASWVS 642 >gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM 11293] gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM 11293] Length = 1128 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 30/233 (12%) Query: 266 LLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 +L+ + I+V+S+ + + + ES Q +V + IG + + L LV Y + Sbjct: 113 MLKGDHVILVASLRAFLTPVPPPESIKQTLVPITIGGAFDPISLRDRLVSYGYTKVPKVT 172 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384 +RG F + G+ ++IF ED R+ +++E+I+ F +V+T K S Sbjct: 173 VRGEFALRGEVLDIFLGG-EDEPVRIVFEWDEVEKITRF---------DVDTQK----ST 218 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 R TL + I + ++R++E+ L +Q Q+ + LE L G C+ EN Sbjct: 219 EELKRVTLYPFHELIWSDERIRMLEVN----LPPSQ---QKKAF-LEELAAKGGCRDEEN 270 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDS--LLFVDESHVTIPQISGMYRGDFHRKA 495 + + N PP TL +Y+ +D+ LLF +E ++ Q G + +RKA Sbjct: 271 F--FAASFN---PPGTLLDYLNDDAMLLLFEEERLISGAQTLGKEYRELYRKA 318 >gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484] Length = 596 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 V T+ AE++ L ER I ++ +V +R +I+ LR G DVLV ++ GLD+ Sbjct: 271 VRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVATDVAARGLDV 330 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTR 706 GLV D +E + + IGR R V L T + +L I+ TTR Sbjct: 331 ERIGLVVNFDVPRE-----AETYVHRIGRTGRAGREGVALSFVTPAEQSRLRTIERTTR 384 >gi|158290214|ref|XP_311826.4| AGAP003047-PA [Anopheles gambiae str. PEST] gi|157017787|gb|EAA07964.4| AGAP003047-PA [Anopheles gambiae str. PEST] Length = 636 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY N V +H + ER E +R R G+ +LV + G Sbjct: 437 LIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALRLFRCGRCPILVATAVAARG 496 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 LDIP V D E + IGR R N Sbjct: 497 LDIPNVKQVINFDLPAE-----VEEYVHRIGRTGRMGN 529 >gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10270] gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10270] Length = 1167 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS KT +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E I I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|299755458|ref|XP_001828678.2| DEAD box family helicase [Coprinopsis cinerea okayama7#130] gi|298411233|gb|EAU93182.2| DEAD box family helicase [Coprinopsis cinerea okayama7#130] Length = 635 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 AQ+ L+ + R ++LT+ I R +HS +ER E++ R G+F VL+ Sbjct: 274 AQKRKSTLVFCVDLRHVQELTDTFRRFGIDARNIHSHTPAVERRELVTAFRAGEFPVLIN 333 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +L EG DIP V + K S+ +Q IGR R Sbjct: 334 CAVLTEGADIPNIDCVLLARPTK-----SRNVFMQMIGRGMR 370 >gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 500 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 28/175 (16%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LTE L R V +H ++K R ++IR + G DV+V ++ GLD+ + Sbjct: 249 TKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAARGLDVND 308 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV------------ILYADTITKSIQ 698 V D ++ S + IGR R + + Y + T+ Sbjct: 309 VSHVINFDLPQDS-----ESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEESTRQKM 363 Query: 699 LAIDETT-----RRREKQLEHNKKHNINPQSVKE------KIMEVIDPILLEDAA 742 +D T R R KQ + K +N + K+ +++E DP++L AA Sbjct: 364 KQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLLEEFDPVVLVSAA 418 >gi|95007372|emb|CAJ20592.1| DNA helicase, putative [Toxoplasma gondii RH] Length = 888 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L + L E IR+R +H +K E+ E++ +LR G D+LV ++ G+D+P ++ Sbjct: 746 EELRKLLPE--IRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVIV 803 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 I A++ G T L Q GR R+ + I ++ +DE R Sbjct: 804 IDSAERFGL----TQLHQLRGRVGRDARHPSFCF--IILDPLKKNLDEKAMHR 850 >gi|325114293|emb|CBZ49850.1| putative ATP-dependent DNA helicase [Neospora caninum Liverpool] Length = 1801 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L + L E IR+R +H ++ E+ E++ +LR G D+LV ++ G+DIP ++ Sbjct: 1411 EELRKLLPE--IRIRLLHGRMRAEEKEEVLSELRGGTVDLLVATTVVEVGIDIPNASVIV 1468 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVN--SKVILYADTITKSI 697 I A++ G T L Q GR R+ S + D + K++ Sbjct: 1469 IDSAERFGL----TQLHQLRGRVGRDARHPSFCFIILDPLNKNL 1508 >gi|329769499|ref|ZP_08260909.1| hypothetical protein HMPREF0433_00673 [Gemella sanguinis M325] gi|328838714|gb|EGF88312.1| hypothetical protein HMPREF0433_00673 [Gemella sanguinis M325] Length = 512 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 21/192 (10%) Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE--------INL 577 + +SATP S +++ I++ IR G + P IR +V +++E I+ Sbjct: 312 VFLSATP-SKKIKSYVDDIIKIPIRYHGYLLPVPRIRKVNKKVL-IFEEKSEIMNKYISE 369 Query: 578 AAQQGLRILLTVLTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 + R L+ V M + L YL +I++ Y++SE K +R + I+ K D Sbjct: 370 IINKKRRFLVFVPVIAMCQSLKNYLEKYISESIKIDYVYSEDK--DRSDKIQRFYNYKID 427 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILYAD 691 +L+ +L G+ V + DA + F +K SLIQ GR R + ++I ++D Sbjct: 428 ILITTTILERGVTFDHLD-VMVFDAGHKNF--TKESLIQIAGRVGRKEYDNTGEIIYFSD 484 Query: 692 TITKSIQLAIDE 703 ITK+I+ AI E Sbjct: 485 EITKNIKHAIKE 496 >gi|325180080|emb|CCA14481.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 594 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 7/102 (6%) Query: 582 GLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 GL+I LL V K ++L + L I V +H++ ++R +++R+ R GK VL+ Sbjct: 406 GLQIPALLFVQNKERVDELYQELLYDGIHVGAIHADRSQMQRDQVLREFRAGKIWVLICT 465 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 +L+ GLD +V D F +S S I IGR RN Sbjct: 466 DLICRGLDFKAVNMVINYD-----FPQSAISYIHRIGRTGRN 502 >gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia] gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia] Length = 724 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 521 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 576 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 577 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 630 Query: 685 KVILYA 690 K +A Sbjct: 631 KGTSFA 636 >gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L] gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L] Length = 1295 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 35/257 (13%) Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR---SLLERND---CIVVSSVS 279 S Y+ + PE+ + + + ++DR+ ++ SL++R+ IV + + Sbjct: 87 ASPYEPFDPESEMTWGQMQVLADLVERLKVDRLPVESSDLQPSLVQRSTHGMAIVATQAA 146 Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + V+++ + L G + + K L L + Y+R + G + GD +++F Sbjct: 147 LQPHLPPVDAFKPYCLTLNQGMTWDGKNLDQKLAQLGYERVPLVETEGQWSRRGDIVDVF 206 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH-YVTPRPTLNTAMKY 398 P LE + R+ FG+++E++ EF P T + + ++ I + ++ + + + Sbjct: 207 PVALE-LPVRLEWFGDELEQLREFDPATQRSLDKIDGIVLTPTDFGHIISQVLRTSKAEL 265 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I+ L + E +EG+ LE R I +D P Sbjct: 266 IQSYLSPQEQESFEEGQSLEGSRRFLGIAFDQ---------------------------P 298 Query: 459 PTLFEYIPEDSLLFVDE 475 +L +Y+PE++L+ +DE Sbjct: 299 ASLLDYLPENTLIVIDE 315 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A +L E + E R+ H ++ E I+ G+ D+LV ++ GLDIP Sbjct: 962 VAAELREMILE--ARIAIAHGQLDPAELESIMLTFSNGEADILVCTTIIESGLDIPRVNT 1019 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680 + I DA K G L Q GR R Sbjct: 1020 IVIEDAHKFGL----AQLYQLRGRVGR 1042 >gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus 11B] gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus 11B] Length = 1192 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY---IEKESS 250 RP + + + A +L + + P AV + ++ + E PR DT + Sbjct: 67 RPVLAVTATEREATELATALEPLLPAGAVAEYPAW-ETLPHERLSPRADTVGRRVAVRRL 125 Query: 251 INEQIDRMR--HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308 + EQ +R + R+LL+ + G+G +E V+L+ GD + ++ Sbjct: 126 LREQGGTLRVITTPVRALLQPQ----------VAGLGDLEP-----VELRPGDEADLNDV 170 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++ LV Y R D+ RG V G ++IFP E RV FG+ IEEI F Sbjct: 171 VARLVAIGYHRVDLVERRGEIAVRGGILDIFPPTAEH-PLRVEFFGDRIEEIRPF 224 >gi|221482870|gb|EEE21201.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii GT1] Length = 1042 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L + L E IR+R +H +K E+ E++ +LR G D+LV ++ G+D+P ++ Sbjct: 651 EELRKLLPE--IRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVIV 708 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 I A++ G T L Q GR R+ + I ++ +DE R Sbjct: 709 IDSAERFGL----TQLHQLRGRVGRDARHPSFCF--IILDPLKKNLDEKAMHR 755 >gi|293411880|ref|ZP_06654605.1| type III restriction enzyme [Escherichia coli B354] gi|291469435|gb|EFF11924.1| type III restriction enzyme [Escherichia coli B354] Length = 519 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E L Q L + V KR + L E + E +RV +++ E R + L Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQATRQAKLNSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA--ARNVNSKV 686 G+ DVL+G +L G+D+P G V + K ++ + Q +GR A+ + V Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLRAKKNQANV 469 Query: 687 ILYADTITKSIQLAIDETTRRR 708 D I S + + + R+ Sbjct: 470 CFITDFIDTSNKYLLSHSYERK 491 >gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster] gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster] gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster] Length = 719 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 517 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 572 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 573 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 626 Query: 685 KVILYA 690 K +A Sbjct: 627 KGTSFA 632 >gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2] gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2] Length = 1177 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/313 (19%), Positives = 133/313 (42%), Gaps = 37/313 (11%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF------KNFFPHNAVEY 224 QL+ G++GS + + ++ P +++ PN + A ++Y + K + A E Sbjct: 28 QLISGLSGSARPIFYQTIWSELEEPLLIVTPNLLHAQRIYDDLVRLMGEKQVHLYPAEEL 87 Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284 + + PE R DT ++ S+ + I + R LL Sbjct: 88 IAAEVSFSGPELRAHRIDT-LDHMKSVGKGIYITPVAGMRKLLPTK-------------- 132 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 E + +++ G+ ++ E L LV Y R + G F + G ++I+P + E Sbjct: 133 ---EQWDYATLRIAEGEELDTDEWLLKLVAMGYSRTPMVTTPGEFALRGGILDIYPLNFE 189 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTAMKYIKEEL 403 R+ +F +++ + F + + V+++ I AN ++ + A E+L Sbjct: 190 HPV-RIELFDTEVDSLRLFSAEDQRSLEKVQSLCILPANELVLSADQRILLA-----EKL 243 Query: 404 KMRLIELEKEGRLLEAQRL-EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462 + +L K+ + + + L Q I +D+++L+ + + + Y+ + ++ L Sbjct: 244 EAQLASSLKKIKADDTKALMMQHIQHDIDLLKQGETPEQLAKYASLIDTQS-----AFLG 298 Query: 463 EYIPEDSLLFVDE 475 +Y P + L+F DE Sbjct: 299 DYFPGNGLVFFDE 311 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E +I G +DVLV ++ G+DIP + + +AD+ G Sbjct: 860 RVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDIPNVNTLIVYNADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|166714794|gb|ABY88109.1| UvrB [Stenotrophomonas sp. LMG 980] Length = 60 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYATTR 55 >gi|166714786|gb|ABY88105.1| UvrB [Stenotrophomonas sp. ICB134] Length = 60 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y +HY T R Sbjct: 2 IDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYATTR 55 >gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM 2380] gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM 2380] Length = 1161 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 21/225 (9%) Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203 T+ HP+ D+ AA L+G+ E LLG+TG+ F +A+++ P +++A ++ Sbjct: 7 HTELHPALDELAAT---LEGLPHTE----LLGMTGTSCAFVLARLLAENPAPLLILAASQ 59 Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263 A ++ ++ + +++ +++ EA +P + I+ R + Sbjct: 60 EQAVRITADLGFYLGRPDQVFYLPHWEMRPYEALLP------------HPAIEATRLATL 107 Query: 264 RSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 +L + R +V++ S + + + + L+ + ++ LL L + Y + Sbjct: 108 AALADGRALALVMTVRSVMQRVMPRRVLAGLRSCLREQELHPREALLPHLAELGYHAVPL 167 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 GTF V GD ++++P L + R+ FG+ IE + F P T Sbjct: 168 VEDPGTFSVRGDLLDLYPPTLPEPV-RIEFFGDQIERMRPFDPTT 211 >gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus pyogenes M1 GAS] gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS5005] gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus pyogenes M1 GAS] gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS5005] Length = 1167 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS KT +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRILLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E I I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|121612291|ref|YP_001000171.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 81-176] gi|167005129|ref|ZP_02270887.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 81-176] gi|87250493|gb|EAQ73451.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 81-176] Length = 607 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297 >gi|283955886|ref|ZP_06373376.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] gi|283792546|gb|EFC31325.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] Length = 620 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297 >gi|237840713|ref|XP_002369654.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49] gi|211967318|gb|EEB02514.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49] gi|221503338|gb|EEE29036.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii VEG] Length = 1042 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L + L E IR+R +H +K E+ E++ +LR G D+LV ++ G+D+P ++ Sbjct: 651 EELRKLLPE--IRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVIV 708 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV 682 I A++ G T L Q GR R+ Sbjct: 709 IDSAERFGL----TQLHQLRGRVGRDA 731 >gi|157414757|ref|YP_001482013.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 81116] gi|157385721|gb|ABV52036.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 81116] gi|307747396|gb|ADN90666.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni M1] gi|315931095|gb|EFV10069.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 607 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297 >gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563] gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563] Length = 1233 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 33/227 (14%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA-QLYSEFKNFFPHNAVEYF----- 225 L LG+ G+ + + ++ +V+ N +L A Y++ ++ F + + F Sbjct: 27 LYLGLQGASRAYMAKTLLNLASEQKVVIVTNNLLQADHFYNDLQSDFSDDQLHLFNVPES 86 Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284 + + PEA R ++ R + T +L ++ ++G+ Sbjct: 87 VAADWAIASPEALADRLTV-----------LNWARDTKTTGVL----------ITPMFGL 125 Query: 285 GSV----ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 + E + + +K+GD +E L+ L+ Q Y+R +I + G GD ++ +P Sbjct: 126 KRLLTPTEIWDNTRLLVKLGDELEPATLVQCLLNQGYQRAEIVMTPGEMSQRGDIVDFYP 185 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 + E RVS+ +++E IS F P T + +++ +I I + ++ Sbjct: 186 INAE-YPIRVSLAFDEVERISTFDPNTQKSLQDQPSINIQPSQEFIV 231 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ ++ ++ D LG+FDVLV ++ G+DIP + + AD+ G Sbjct: 860 RVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLVEGADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 917 -STLYQLRGRVGRS 929 >gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138] gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata] gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata] Length = 617 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LAA L+ V TKRMA+ LT++L +N +H + ER + R G+ ++L Sbjct: 397 LAASNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRANIL 456 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 457 VATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGV 501 >gi|153950967|ref|YP_001398499.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei 269.97] gi|152938413|gb|ABS43154.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei 269.97] Length = 607 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------ALTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYDEAKKFLP 297 >gi|86149008|ref|ZP_01067240.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597069|ref|ZP_01100305.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 84-25] gi|218562119|ref|YP_002343898.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840366|gb|EAQ57623.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190758|gb|EAQ94731.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 84-25] gi|112359825|emb|CAL34612.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925731|gb|ADC28083.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni IA3902] Length = 607 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297 >gi|74004732|ref|XP_545493.2| PREDICTED: similar to Interferon induced with helicase C domain protein 1 (Helicase with 2 CARD domains) (Helicard) (Melanoma differentiation-associated protein 5) (MDA-5) (RNA helicase-DEAD box protein 116) (Murabutide-down-regulated protein)... [Canis familiaris] Length = 1029 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 773 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 826 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEV 732 R S +L A + + I+ I REK + H N+NP+ KI+E+ Sbjct: 827 RADESTYVLVAHSNSGVIEREI--VNDFREKMMYKAIDHVQNMNPEEYAHKILEL 879 >gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba] gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba] Length = 719 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 519 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 574 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 575 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 628 Query: 685 KVILYA 690 K +A Sbjct: 629 KGTSFA 634 >gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta] gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta] Length = 720 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 517 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 572 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 573 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 626 Query: 685 KVILYA 690 K +A Sbjct: 627 KGTSFA 632 >gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS8232] gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS8232] Length = 1167 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +SS+ + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E I I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|166714778|gb|ABY88101.1| UvrB [Stenotrophomonas sp. ICB130] Length = 60 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 37/54 (68%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ + +Y +HY T R Sbjct: 2 IDVFPAESDSEALRMELFDGEVEKITLFDPLTGETLRNMKRLTVYPKTHYATTR 55 >gi|113477812|ref|YP_723873.1| type III restriction enzyme, res subunit [Trichodesmium erythraeum IMS101] gi|110168860|gb|ABG53400.1| type III restriction enzyme, res subunit [Trichodesmium erythraeum IMS101] Length = 590 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 22/176 (12%) Query: 574 EINLAAQQGLRILLTVLTKRM--------AEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L + LR L +L + A++ T Y + + + + ER E++ Sbjct: 315 EIALGTEGKLRTLSNLLVQHFPERTLIFTADNTTVYRISHDFLIPAITHQTPVKERHEVL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 R G++ +V ++L EG+D+P+ + IL S+ IQ +GR R + Sbjct: 375 SKFRTGEYKTIVASHVLNEGVDVPDARVAVILSGTG-----SEREYIQRLGRVLRRGSDK 429 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVIDP 735 N ILY + + ++T+RRR ++ K H + + + +E+I P Sbjct: 430 NKLAILYEVVTENTTE---EQTSRRRRAGIKRKKSHQDQDEKQENSVVQQLEIIKP 482 >gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf. saccharolyticum K10] Length = 1185 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/258 (20%), Positives = 114/258 (44%), Gaps = 21/258 (8%) Query: 228 YYDY--YQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG- 283 Y DY + P ++ P D + R R + L+E +V++V + Sbjct: 67 YEDYRTFDPAVFLYPAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVTTVDGLMDR 126 Query: 284 ---IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEI 338 + + + +V G+S++ +E+ +L Y+R +G + G F V G I+I Sbjct: 127 LLPLSEIRNSRIAVVS---GESLKTEEMKEALAGLGYER--VGQVDGMGQFSVRGGIIDI 181 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP E++ R+ ++G++++ I F P + + + +E ++I + + + + + Sbjct: 182 FPL-TEELPVRIELWGDEVDSIRSFDPESQRSVEELERVEICPATELLLEKSRVEKGLSK 240 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I++E+K L + + EA R+E + E + + + +Y E Sbjct: 241 IEKEMKKYGKALRDQMKNEEAHRIEGLVRELSEEIREGFKVHGLGGFIQYFA-----EKT 295 Query: 459 PTLFEYIPEDSL-LFVDE 475 + EY P++ L +F+DE Sbjct: 296 VSFLEYFPKEELAVFLDE 313 Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 14/161 (8%) Query: 554 LVDPPVEIRSARTQVEDVYDE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYER--N 606 L +PPV+ +T V + DE IN +G ++ E++ ++ + Sbjct: 805 LEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNNIEEIANHVASLVPD 864 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 +V + H +++ E I+ D G DVLV ++ GL+IP + I DAD+ G Sbjct: 865 AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRLGL-- 922 Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + + +L +E +R Sbjct: 923 --SQLYQIRGRVGRSSRTS---YAFLMYRRDKLLREEAEKR 958 >gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2] gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2] Length = 1165 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 33/244 (13%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I QLL I R+ L GV GSG + AK+ + +V+ P++ A E + + Sbjct: 2 IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVV 275 P Y P + K S + + R +A LL R + ++V Sbjct: 62 LPKGKRRVI-----------YFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110 Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDS---------VEQKELLSSLVKQQYKRQDIGIIR 326 + V + +MI + ++ D+ +++ L++ L Y R + Sbjct: 111 THVDTL--------LLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEP 162 Query: 327 GTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSH 384 G + V G +++F PS V R+ +FG+ +E + F P+T + I++++ I+I AN Sbjct: 163 GDYSVRGGILDVFSPSATFPV--RIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEA 220 Query: 385 YVTP 388 + P Sbjct: 221 VIDP 224 >gi|332158368|ref|YP_004423647.1| DNA repair protein RAD25 [Pyrococcus sp. NA2] gi|331033831|gb|AEC51643.1| DNA repair protein RAD25 [Pyrococcus sp. NA2] Length = 442 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A++G R+L+ V E L + L E+ I ++ S+ + R EI+ + G+ VLV Sbjct: 309 AKEGHRVLIDVKRIDHGEILVKMLKEKGINAEFLSSQ--SPNRWEILEKFKKGEIQVLVS 366 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LL+EG+DIPE + + K S IQTIGRA R Sbjct: 367 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 402 >gi|61657450|emb|CAI44362.1| primosomal protein N [Thermotoga sp. SG1] Length = 735 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 9/141 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+++ +L Y E+ + +E + I L G+ D+LVG ++ + D+PE Sbjct: 505 TEKIERELQRYFPEKRVVRVDREVVEDVMEVEDYINRLISGEIDILVGTRMVTKSFDVPE 564 Query: 651 CGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AID 702 GLV +LD D F LR+ +IQ GRA+R + IL + + + AI+ Sbjct: 565 IGLVCVLDVDSLIFLPDFSASLRAFQLIIQVFGRASRKGTGRAILQTHNPDEEVIIRAIE 624 Query: 703 ETTRR-REKQLEHNKKHNINP 722 E E++LE K P Sbjct: 625 EDVEGFYERELERRKSLGYPP 645 >gi|3150215|emb|CAA19182.1| ATP-dependent DNA helicase [Mycobacterium leprae] Length = 592 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N+R+ MH + E+ + R G+ DVLV N++ G+D+P ++ ++DAD+ G Sbjct: 407 NVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGI- 465 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694 + L Q GR R + + L A ++ Sbjct: 466 ---SQLHQLRGRIGRGTHPSLCLLASWVS 491 >gi|171778161|ref|ZP_02919418.1| hypothetical protein STRINF_00254 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283143|gb|EDT48567.1| hypothetical protein STRINF_00254 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 432 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 8/99 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ ++ S KT R+E++ + R GK +LV +L G+ P C V +L A+ + L S Sbjct: 329 RIGFVSS--KTENRLELVEEFRQGKLTILVTTTILERGVTFP-CVDVFVLLANHK--LYS 383 Query: 668 KTSLIQT---IGRAARNVNSKVILYADTITKSIQLAIDE 703 K++L+Q +GRAA +++ D +TK+++ AI E Sbjct: 384 KSALVQISGRVGRAAERPTGELLFLHDGVTKAMKKAISE 422 >gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus 125-2-CHN] gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus 125-2-CHN] Length = 1164 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++ + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I A LL IVV++ + Y + + Sbjct: 81 -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 ++Q + G E KEL L+ Y+R + G F + GD ++++P E+ Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEF 363 R+ FG++I+ I EF Sbjct: 190 VRIEFFGDEIDTIKEF 205 >gi|121945883|dbj|BAF44660.1| RNA helicase [Neobenedenia girellae] Length = 548 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601 G I E+I++ +V E +++V+ + +E+ + IL+ TKRM E L + Sbjct: 364 GQIPEKIVQKMKIV----EKFDWKSEVQKILNELLQDKDEDESILVFCNTKRMVELLEFH 419 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 LY+ ++ +H + R +R LR G+ +VLV ++ GLDIP G V Sbjct: 420 LYKSGLKCGRLHGGMGQTNRDRSLRLLRDGRINVLVATSVAARGLDIPAIGAVV-----N 474 Query: 662 EGFLRSKTSLIQTIGRAAR 680 G + I +GR R Sbjct: 475 VGLPTNLDDYIHRVGRTGR 493 >gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus MV-3A-US] gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus CTV-05] gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus MV-3A-US] gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus CTV-05] Length = 1164 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++ + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I A LL IVV++ + Y + + Sbjct: 81 -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 ++Q + G E KEL L+ Y+R + G F + GD ++++P E+ Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEF 363 R+ FG++I+ I EF Sbjct: 190 VRIEFFGDEIDTIKEF 205 >gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus JV-V01] gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus MV-1A-US] gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus JV-V01] gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus MV-1A-US] Length = 1164 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++ + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I A LL IVV++ + Y + + Sbjct: 81 -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 ++Q + G E KEL L+ Y+R + G F + GD ++++P E+ Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEF 363 R+ FG++I+ I EF Sbjct: 190 VRIEFFGDEIDTIKEF 205 >gi|284166979|ref|YP_003405258.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511] gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511] Length = 820 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 16/146 (10%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDL 628 L + G R+++ ++ AE LT++L E R++ + E+ E++ Sbjct: 366 TLGLEGGERVIVFTESRDTAEALTDFLSESFDAKRFVGQGDREGSDGMTQTEQQEVLDQF 425 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687 R G+F+VLV ++ EGLD+PE LV + + + IQ GR R + V+ Sbjct: 426 RGGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQSEGRVVV 480 Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713 L A+ I +RRREK++E Sbjct: 481 LMAEDTRDEAYFWI---SRRREKEME 503 >gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1] gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1] Length = 1187 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/258 (20%), Positives = 114/258 (44%), Gaps = 21/258 (8%) Query: 228 YYDY--YQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG- 283 Y DY + P ++ P D + R R + L+E +V++V + Sbjct: 69 YEDYRTFDPAVFLYPAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVTTVDGLMDR 128 Query: 284 ---IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEI 338 + + + +V G+S++ +E+ +L Y+R +G + G F V G I+I Sbjct: 129 LLPLSEIRNSRIAVVS---GESLKTEEMKEALAGLGYER--VGQVDGMGQFSVRGGIIDI 183 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398 FP E++ R+ ++G++++ I F P + + + +E ++I + + + + + Sbjct: 184 FPL-TEELPVRIELWGDEVDSIRSFDPESQRSVEELERVEICPATELLLEKSRVEKGLSK 242 Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 I++E+K L + + EA R+E + E + + + +Y E Sbjct: 243 IEKEMKKYGKALRDQMKNEEAHRIEGLVRELSEEIREGFKVHGLGGFIQYFA-----EKT 297 Query: 459 PTLFEYIPEDSL-LFVDE 475 + EY P++ L +F+DE Sbjct: 298 VSFLEYFPKEELAVFLDE 315 Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 14/161 (8%) Query: 554 LVDPPVEIRSARTQVEDVYDE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYER--N 606 L +PPV+ +T V + DE IN +G ++ E++ ++ + Sbjct: 807 LEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNNIEEIANHVASLVPD 866 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 +V + H +++ E I+ D G DVLV ++ GL+IP + I DAD+ G Sbjct: 867 AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRLGL-- 924 Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + + +L +E +R Sbjct: 925 --SQLYQIRGRVGRSSRTS---YAFLMYRRDKLLREEAEKR 960 >gi|160943140|ref|ZP_02090377.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii M21/2] gi|158445609|gb|EDP22612.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii M21/2] Length = 686 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 ED+ + L + RV MH ++K E+ ++ D + G+ D LV ++ G+D+P ++ Sbjct: 497 EDIAKTLLP-DRRVGLMHGKLKPKEKAAVMEDFKAGRLDALVSTTVIEVGVDVPNASVMV 555 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698 I +A++ G ++L Q GR R S L +D ++++Q Sbjct: 556 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNTSEAVQ 595 >gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1] gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1] Length = 1164 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L+ G + + ++ + P I++ N+ A LY E V+ F Sbjct: 24 KNSLITGTNAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287 P T T + ++ +I A LL IVV++ + Y + + Sbjct: 81 -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 ++Q + G E KEL L+ Y+R + G F + GD ++++P E+ Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189 Query: 348 WRVSMFGNDIEEISEF 363 R+ FG++I+ I EF Sbjct: 190 VRIEFFGDEIDTIKEF 205 >gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata] Length = 851 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A G R L+ V TKR A+ L L + +H + ER E +RD + GK +LV Sbjct: 635 ADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFKSGKCPILVA 694 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKS 696 ++ GLDIP+ V D E + IGR R N+ Y D+ S Sbjct: 695 TSVAARGLDIPKVEHVVNYDLPSE-----VDEYVHRIGRTGRCGNLGRATSFYDDSANAS 749 Query: 697 IQLAI 701 + ++ Sbjct: 750 LARSL 754 >gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a] gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a] Length = 1246 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A L + V F S+ + E PR DT ++ + + R+ H A+ Sbjct: 106 AEDLTAALAGLLGPEVVAVFPSW-ETLPHERLSPRADTVGQRLAVLR----RLAHPASTG 160 Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 L IVV+ V + G+G + V L GD+ + E+++ LV Y R Sbjct: 161 LPPLR--IVVAPVRSVLQPQVAGLGELAP-----VSLAAGDTADLDEVVARLVGMAYHRV 213 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG V G +++FP E+ RV FG+++E+I F Sbjct: 214 DLVERRGEIAVRGGILDVFPPT-EEHPLRVEFFGDEVEDIRRF 255 >gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis M23590] gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis M23590] Length = 1173 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 15/183 (8%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L IG ++ LL LV Y+R+ + G F V G I+I+P E V R+ +F Sbjct: 139 IHLHIGQDIDVAHLLQQLVNMGYRRESVVSHIGEFSVRGGIIDIYPLIGEPV--RIELFD 196 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 +++ I +F T + N++ + I + S YV + +K+++ LK + Sbjct: 197 TEVDSIRDFDIETQRSNNNLDGVSITSASDYVIT----DDVIKHLQSNLKAAY--EDTRP 250 Query: 415 RLLEAQRLEQRITYD-LEMLETTG-SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 ++ + R + + TY+ +++TT Q + ++ E P TL +Y +D+++ Sbjct: 251 KIETSVRNDLKETYESFNLIDTTAVDHQLLRRLVAFMY-----ETPATLIDYFQQDAIVV 305 Query: 473 VDE 475 VDE Sbjct: 306 VDE 308 >gi|295104656|emb|CBL02200.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii SL3/3] Length = 686 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 ED+ + L + RV MH ++K E+ ++ D + G+ D LV ++ G+D+P ++ Sbjct: 497 EDIAKALLP-DRRVGLMHGKLKPKEKAAVMEDFKAGRLDALVSTTVIEVGVDVPNASVMV 555 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698 I +A++ G ++L Q GR R S L +D ++++Q Sbjct: 556 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNTSEAVQ 595 >gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17] gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17] Length = 1183 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/334 (20%), Positives = 139/334 (41%), Gaps = 51/334 (15%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +V+ N A ++Y + + Sbjct: 21 IQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDLVSL 80 Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 V E S PE R + R + Sbjct: 81 LGEQDVWLYPVNELIASEIGVASPELKAQRIEVL------------------NRLAMGEQ 122 Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 IVV + E + Q +++ +G ++ LL +L Y+R+ + G F Sbjct: 123 GIIVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFS 182 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G ++I+P E++ +R+ F +++ I F +VE + V P Sbjct: 183 LRGGILDIYPL-TEELPFRIEFFDTEVDSIRSF---------DVEEQRSQDKRESVKFGP 232 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE---------QRITYDLEMLETTGSCQS 441 T + K+ELK+ + LE EG + Q+L + +++++E+L+ + Q+ Sbjct: 233 A--TEFLFSKDELKLGVERLE-EGLMKTMQKLSDDKIKTAVLETVSHEIEILK---NGQT 286 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 IE +YL+ + +L +Y+PE+ ++ +DE Sbjct: 287 IEQMFKYLSIFY--KEHASLIDYLPENGVVILDE 318 Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 867 RVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 923 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 924 -SQLYQLRGRVGRS 936 >gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster] Length = 575 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 373 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 428 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 429 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 482 Query: 685 KVILYA 690 K +A Sbjct: 483 KGTSFA 488 >gi|50293977|ref|XP_449400.1| hypothetical protein [Candida glabrata CBS 138] gi|49528714|emb|CAG62376.1| unnamed protein product [Candida glabrata] Length = 682 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L Y ER I+ + + S+ +R + IRD++ G+ +VL+ + EG DIP + Sbjct: 287 ECLERYFNERGIKAKAVSSKTSVEDRQKAIRDIKSGELEVLLNCGIFTEGTDIPNIDCIL 346 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 + K S+T L+Q IGR R +SK Sbjct: 347 LCRPTK-----SRTLLVQMIGRGLRLHHSK 371 >gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis HKU09-01] gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis HKU09-01] Length = 1173 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 15/183 (8%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L IG ++ LL LV Y+R+ + G F V G I+I+P E V R+ +F Sbjct: 139 IHLHIGQDIDVAHLLQQLVNMGYRRESVVSHIGEFSVRGGIIDIYPLIGEPV--RIELFD 196 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 +++ I +F T + N++ + I + S YV + +K+++ LK + Sbjct: 197 TEVDSIRDFDIETQRSNNNLDGVSITSASDYVIT----DDVIKHLQSNLKAAY--EDTRP 250 Query: 415 RLLEAQRLEQRITYD-LEMLETTG-SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 ++ + R + + TY+ +++TT Q + ++ E P TL +Y +D+++ Sbjct: 251 KIETSVRNDLKETYESFNLIDTTAVDHQLLRRLVAFMY-----ETPATLIDYFQQDAIVV 305 Query: 473 VDE 475 VDE Sbjct: 306 VDE 308 >gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM 43183] gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM 43183] Length = 1168 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 24/214 (11%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A L + F + V +F ++ + E PR+DT + + + R+ H Sbjct: 62 AEDLTAALGCFLDPHRVAHFPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPDPDD 116 Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + +VV+ V + G+G +E V+L+ GD + +E++ L Y+R Sbjct: 117 VAAGPLDVVVTPVRAVLQPIVSGLGDLEP-----VRLRTGDEADLEEVVRRLADAGYQRV 171 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG V G +++FP E+ RV +G+ +EEI F K + ++++ Sbjct: 172 DLVEKRGELAVRGGILDVFPP-TEEHPLRVEFWGDAVEEIRYF------KAADQRSLEVA 224 Query: 381 ANSHYVTP--RPTLNTAMKYIKEELKMRLIELEK 412 + + P LN A++ EL R LE+ Sbjct: 225 QDGLWAPPCRELPLNAAVRQRARELAERHPALEE 258 >gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM 12442] gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM 12442] Length = 1176 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/334 (20%), Positives = 139/334 (41%), Gaps = 51/334 (15%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +V+ N A ++Y + + Sbjct: 14 IQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDLVSL 73 Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 V E S PE R + R + Sbjct: 74 LGEQDVWLYPVNELIASEIGVASPELKAQRIEVL------------------NRLAMGEQ 115 Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 IVV + E + Q +++ +G ++ LL +L Y+R+ + G F Sbjct: 116 GIIVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFS 175 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G ++I+P E++ +R+ F +++ I F +VE + V P Sbjct: 176 LRGGILDIYPL-TEELPFRIEFFDTEVDSIRSF---------DVEEQRSQDKRESVKFGP 225 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE---------QRITYDLEMLETTGSCQS 441 T + K+ELK+ + LE EG + Q+L + +++++E+L+ + Q+ Sbjct: 226 A--TEFLFSKDELKLGVERLE-EGLMKTMQKLSDDKIKTAVLETVSHEIEILK---NGQT 279 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 IE +YL+ + +L +Y+PE+ ++ +DE Sbjct: 280 IEQMFKYLSIFY--KEHASLIDYLPENGVVILDE 311 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|75907174|ref|YP_321470.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC 29413] gi|75700899|gb|ABA20575.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC 29413] Length = 517 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 16/127 (12%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LR+L +LTK A++ T Y +++ + + + ER EI+ Sbjct: 315 EIALGTDSKLRVLANLLTKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV- 682 R G+++ LV ++L EG+D+P + IL S IQ +GR R N+ Sbjct: 375 TKFREGEYNTLVASHVLNEGVDVPAASIAIILSGTG-----STREYIQRLGRILRKGNIQ 429 Query: 683 NSKVILY 689 N + ILY Sbjct: 430 NKQAILY 436 >gi|18466743|ref|NP_569550.1| putative helicase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506059|emb|CAD09945.1| putative helicase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 519 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E + GL + V KR + L E + E ++V +++ E R + L Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLNSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GK DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 AAGKIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461 >gi|15827885|ref|NP_302148.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae TN] gi|13432220|sp|O69460|RECG_MYCLE RecName: Full=ATP-dependent DNA helicase recG gi|13093438|emb|CAC30624.1| ATP-dependent DNA helicase [Mycobacterium leprae] Length = 743 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N+R+ MH + E+ + R G+ DVLV N++ G+D+P ++ ++DAD+ G Sbjct: 558 NVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGI- 616 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694 + L Q GR R + + L A ++ Sbjct: 617 ---SQLHQLRGRIGRGTHPSLCLLASWVS 642 >gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster] gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster] gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster] gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster] gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster] Length = 575 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 373 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 428 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 429 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 482 Query: 685 KVILYA 690 K +A Sbjct: 483 KGTSFA 488 >gi|251771247|gb|EES51828.1| type III restriction enzyme, res subunit [Leptospirillum ferrodiazotrophum] Length = 950 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 +G + + +++ A L E+ I ++ E + ER EI+R R G +L + Sbjct: 547 HEGSKTVAFCVSRLHARLLAEFFSREGIAAGHLTGETPSGERREILRKFREGSLSILFVV 606 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 +LL EG+DIPE V +L S T +Q IGR R K Sbjct: 607 DLLNEGVDIPEIDRVMLLRPTD-----SPTVFLQQIGRGLRLAPGK 647 >gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437] Length = 1181 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 29/311 (9%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K Q++ G+TGS + +A + +RP +++ N A + + P + V + Sbjct: 26 KEQMVAGLTGSARMLYVASLYRETRRPVLLVTHNLNQAQKAVEDLYELLPKDQVLLY--- 82 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 P + T+ ++ ++ E++ + +R + VV + Sbjct: 83 -----PANELVATEIALDGHETLGERVQVL----SRLSKGFSGVFVVPFAGLRKLVPPAH 133 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP---SHLED 345 +S LK+G+ + L+ LVK ++R ++ G F V G ++IFP SH Sbjct: 134 VFSANHRTLKVGEVYPVESLIDQLVKVGFERVEMVEKPGEFSVRGGILDIFPVTYSHPVR 193 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 V W F ++++ I F + + ++I +L A + L+ Sbjct: 194 VEW----FDDEVDSIRPFSVADQRSQTKWDQVEIPPARELFADSDSLYRAGDEVAGLLQE 249 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY-SRYLTGRNPGEPPPTLFEY 464 RL ++ K+ L Q+L ++IT+++E L++ I Y SR G + TL +Y Sbjct: 250 RLSKV-KDPEL--RQKLTEKITWEIEQLKSGTLFTGIYKYISRIYPGNH------TLLDY 300 Query: 465 IPEDSLLFVDE 475 + ++++ +DE Sbjct: 301 LAKETVWVLDE 311 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ H ++ E +++ D G+ DVLV ++ G+DIP + I +AD+ G Sbjct: 858 DARIAVAHGQMAETELEKVMLDFLDGETDVLVSTTIIETGVDIPNVNTLIIYNADRMGL- 916 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 917 ---SQLYQLRGRVGR---SNRIAYA 935 >gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 861 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA ++ V TK AED+ L R I+ + +V ER ++ LR G DVL Sbjct: 395 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 454 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V ++ GLD+ GLV D +E + I GRA R+ + L Sbjct: 455 VATDVAARGLDVDRIGLVVNFDVPRE--AEAYVHRIGRTGRAGRHGEAVTFL 504 >gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 472 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L E L R +H ++ +RI ++R + G DVLV ++ GLDI Sbjct: 230 TKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDI-- 287 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R + V + + + KS ++ TT+R+ Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKM 344 Query: 710 KQLEH---NKKHNINPQSVKEKIMEVIDPILLE 739 ++++ ++ ++V EKIM+ I+ LE Sbjct: 345 ERMDAPTLDEALEGQQKAVMEKIMQTIEENNLE 377 >gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 603 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+Q+ RIL+ L K+ A + +L +R IRV +H +++ +R + + G VLV Sbjct: 435 ASQKNDRILVFCLYKKEATRVEAFLQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLV 494 Query: 638 GINLLREGLDIPECGLV 654 ++ GLDIPE LV Sbjct: 495 ATDVAARGLDIPEVKLV 511 >gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster] gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster] gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster] gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster] gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster] Length = 578 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 376 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 431 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 432 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 485 Query: 685 KVILYA 690 K +A Sbjct: 486 KGTSFA 491 >gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM 17678] gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM 17678] Length = 1134 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 38/219 (17%) Query: 266 LLERNDCIVVSSVSCIYGIGSVESYS------QMIVQLKIGDSVEQKELLSSLVKQQYKR 319 LL++ I+V+SV I Y I +LK+G S++ ++L LV Y+R Sbjct: 109 LLKKEKIILVTSVEAI-----TRKYVPKKIILDNIFKLKVGQSMDMQDLARKLVDLGYQR 163 Query: 320 QDIGIIRG--TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 +G + G F + G I++F + + + R+ F ++I+ I EF + + I +++ Sbjct: 164 --VGKVEGFGQFSMRGGIIDVF-TLMYNFPLRLEFFDDEIDSIREFDIYSQKSIDKFKSV 220 Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437 I + ++ P + A++ I+ +L + + + ++E + Sbjct: 221 TITPSRDFIYP-DNVGMAVEKIRADL---------------SDITDSDVFRNIEKIGAKE 264 Query: 438 SCQSIENYSRYL-TGRNPGEPPPTLFEYIPEDSLLFVDE 475 +ENY Y+ G++ +LFEY+ +D+L+F+D+ Sbjct: 265 YFDGLENYIDYMYEGQDK-----SLFEYLEDDALIFIDD 298 >gi|313124261|ref|YP_004034520.1| ATP-dependent helicase (dead/deah box family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280824|gb|ADQ61543.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 453 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+M ++L +YL ++ ++V +H + ER +R++R G++ +V +L G+D+P Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQFVVASDLAARGIDLPG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + KE +I IGR RN Sbjct: 313 VSLVINYEIPKE-----LEFIIHRIGRTGRN 338 >gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279] Length = 1195 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 2/145 (1%) Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMI 294 A P Y K + ++ + R +A + + C++V+S S + + S Sbjct: 80 ARFPERKDYPWKNTEPDDAVVAARCAAIARVAQGEPCVMVASARSLLRCVPPASSRYWAS 139 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 K+G+ + + + LV Y R D + G FRV GD+++++ + R+ FG Sbjct: 140 TTFKVGEEISFERVPELLVGMGYTRADAADMPGLFRVHGDTVDVWAAQ-ATAPVRMEFFG 198 Query: 355 NDIEEISEFYPLTGQKIRNVETIKI 379 ++I+ I TGQ I + + ++I Sbjct: 199 DEIDRIRLMVASTGQTIGDEDAVEI 223 >gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno] gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno] Length = 1110 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 23/209 (11%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 LLK + ++E ++ G+ G+ + + + + RP +V+ P+K +A + ++ + Sbjct: 17 LLKHLQTKENAEVT-GLAGASLSIVITNLFNTVHRPLLVLLPDKEESAYILNDLETLVGE 75 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIV 274 V +F P++Y R IE + N E ++++ HS T+ LL IV Sbjct: 76 QQVLFF--------PDSY--RRPYQIEDTDNANVLLRAEVLNQLSHS-TKPLL-----IV 119 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + + + + + ++++ GDS+ L L + R D G F V G Sbjct: 120 SYPEALFEKVITRKQLEKNTLKIQKGDSLTIDFLNEVLFSYHFNRTDFVTEPGEFSVRGG 179 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +++F S + +R+ FGN+++ I F Sbjct: 180 IVDVF-SFSNNEPYRIEFFGNEVDSIRTF 207 >gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 852 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA ++ V TK AED+ L R I+ + +V ER ++ LR G DVL Sbjct: 381 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 440 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLD+ GLV D +E + + IGR R Sbjct: 441 VATDVAARGLDVDRIGLVVNFDVPRE-----AEAYVHRIGRTGR 479 >gi|289706901|ref|ZP_06503239.1| DEAD/DEAH box helicase [Micrococcus luteus SK58] gi|289556385|gb|EFD49738.1| DEAD/DEAH box helicase [Micrococcus luteus SK58] Length = 827 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ER RDLR G VL G+++ EGLDIPE V L + S T +Q +GR Sbjct: 368 ERAAAFRDLRAGTLKVLFGVDVFNEGLDIPEVNTVLFLRPTQ-----SATIFLQQLGRGL 422 Query: 680 RNVNSKVILYA 690 R +K +L A Sbjct: 423 RRSPTKSVLTA 433 >gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi] gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi] Length = 746 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 535 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 590 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 591 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 644 Query: 685 KVILYA 690 K +A Sbjct: 645 KGTSFA 650 >gi|114797135|ref|YP_760687.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC 15444] gi|114737309|gb|ABI75434.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC 15444] Length = 692 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 20/204 (9%) Query: 523 PTTIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSA-RTQVEDVYDEINLA 578 P +V+SATP L Q G + I+ +P G PVE R+ T++EDV + I A Sbjct: 415 PHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPG--RKPVETRAVPDTRLEDVIEAIGRA 472 Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY-------ERNIRVRYMHSEVKTLERIEIIRDLRLG 631 ++G R + +D + + E +++ +H +K E+ + D R G Sbjct: 473 LKRGERAFWVCPRVDIEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFRTG 532 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689 + +LV ++ G+D+PE ++ I A EGF L Q GR R ++LY Sbjct: 533 RTRILVATTVIEVGVDVPEATIMVIERA--EGF--GLAQLHQLRGRVGRGDKPSFCLLLY 588 Query: 690 ADTITKSIQLAIDETTRRREKQLE 713 + + + +D T RR E E Sbjct: 589 RPPLGDTARERLD-TLRRTEDGFE 611 >gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans HB-1] gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans HB-1] Length = 417 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 554 LVDPPVEIRSARTQVEDVYDEIN--LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 L+ P V+ R + ED + L +G+ ++ V TKR A D+ + L R I R Sbjct: 210 LITPKVKQRIILVRSEDKIKALEKLLKEHEGVSTIVFVKTKRDAADIEKELQRRGINARA 269 Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 +H ++ +R ++R R GK VLV ++ G+DI + GLV Sbjct: 270 IHGDLSQRQREFVMRAFREGKVKVLVATDVAARGIDIKDVGLV 312 >gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster] gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster] gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster] gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster] gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster] gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster] gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster] gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct] Length = 578 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 +T + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 376 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 431 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 432 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 485 Query: 685 KVILYA 690 K +A Sbjct: 486 KGTSFA 491 >gi|295148218|ref|NP_001171151.1| Fanconi anemia, complementation group M [Xenopus laevis] gi|223929916|gb|ACN24616.1| Fanconi anemia protein [Xenopus laevis] Length = 2166 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM----HSE----VKTL---ERIEIIRDLR 629 +G RI++ + +++ E L + VR M HS VK E++E+++ R Sbjct: 582 EGTRIMIFSSFRDSVQEIAEMLNHHHPTVRVMTFVGHSSAGKGVKGFTQKEQLEVVKRFR 641 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G F+ LV + EGLDI E L+ DA K S L+Q +GR R ++++ Sbjct: 642 EGGFNTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRQGRIVV 695 >gi|166714758|gb|ABY88093.1| UvrB [Stenotrophomonas sp. LMG 10851] Length = 60 Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 35/54 (64%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +RN+ +Y +HY T R Sbjct: 2 IDVFPADRDSEALRIELFDGEVEKITLFDPLTGETMRNLMRFTVYPKTHYATTR 55 >gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434] gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434] Length = 762 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA + ++ V TK AED+ L R I+ + +V ER ++ LR G DVL Sbjct: 356 LATTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVL 415 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V ++ GLD+ GLV D +E + I GRA R+ + L Sbjct: 416 VATDVAARGLDVDRIGLVVNFDVPREA--EAYVHRIGRTGRAGRHGEAVTFL 465 >gi|66820759|ref|XP_643949.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4] gi|74927179|sp|Q86IZ9|DDX52_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx52; AltName: Full=DEAD box protein 52 gi|60472102|gb|EAL70055.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4] Length = 668 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q+GL IL+ +K A DL + L I V +HSE +R I++ R+GK VL+ Sbjct: 436 QKGLEPPILIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLI 495 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTIT 694 L+ G+D V D F + S I IGR R V LY D T Sbjct: 496 CTELMARGMDFKGVNFVINFD-----FPHTLASYIHRIGRTGRAGRPGVAYTLYTDADT 549 >gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1166 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K MA Q +VM + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASDLSSLLGEELVYQF--FAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + + + R +L + +S + + + + + + Sbjct: 84 DVAAAEFIFAS---MDKALSRIEALQFLINPKARGIL----IVSLSGLRTL--LPNPDVF 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ ++LK+G+ + L L+ Y+ I G F GD ++I+ +++ +R+ Sbjct: 135 AKSHIKLKVGEDYDSDALTKQLMTIGYQNVSQVISPGEFSRRGDILDIY-EMTQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 FG+DI+ I F+P T + +E + I+ S + Sbjct: 194 EFFGDDIDGIRHFHPETQKSFEQLEELLIHPASELI 229 >gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM 13479] gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM 13479] Length = 1178 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 23/281 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A ++Y +F+NF P VS Y P D + Sbjct: 54 LVVTYDDTRAREIYEDFRNFEPG------VSLY---------PARDLLFFNADIHGNLLT 98 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 + R + R L+E +VV++ + + + + I++++ G +++ E LV+ Sbjct: 99 KQRMAVFRRLMEEKSGVVVTTFDGLMDHLLPLSFLQKQILEVESGQTLDIAEWKEKLVEL 158 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y+R G F + G I++FP E++ R+ ++ ++++ I F + + I +E Sbjct: 159 GYERVAQVDGMGQFSIRGGIIDVFPL-TEELPVRIELWDDEVDSIRTFDIESQRSIEELE 217 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 + +Y + V + + + I++E K EL + + EA R+ ++ L+ L Sbjct: 218 RVLVYPATEMVLTKQQITDGREAIEKEAKKYEKELRNQLKTEEAARIHSIVSELLDGLRE 277 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDE 475 ++ Y Y + +Y PED +++++DE Sbjct: 278 GWKQHGLDGYIHYFC-----RDSVSFLDYFPEDNTVIYLDE 313 Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++ E I+ D G+ DVLV ++ GLDIP + I DAD+ G Sbjct: 868 VTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADRMGL---- 923 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + K ++ +E +R Sbjct: 924 SQLYQLRGRVGRSSRTS---YAFLMYKRDKMLREEAEKR 959 >gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 584 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE+ S + + +D + +G RI++ TK+ A+ LT + N +H + + Sbjct: 398 VEVVSEMDKRQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQ 457 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER I+ D + G+ +VLV ++ + GLDI V D K + I GRA Sbjct: 458 RERDRILNDFKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPKT--VEDYVHRIGRTGRA 515 Query: 679 ARNVNSKVILYADTITKS-IQLAID 702 NS + DT T +++A D Sbjct: 516 GAVGNSLTFITNDTHTPDRVRMAKD 540 >gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium discoideum AX4] gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=ATP-dependent RNA helicase tifA gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium discoideum AX4] Length = 405 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ + LTE + + N V MH ++ ER EII+ R Sbjct: 264 DIYDSLTIT-----QAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFR 318 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++L G+D+ + LV D D+E + I IGR+ R Sbjct: 319 SGENRVLITTDILARGIDVQQVSLVINYDLPIDRENY-------IHRIGRSGR 364 >gi|269963891|ref|ZP_06178203.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831378|gb|EEZ85525.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 551 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T++ A D+TE + I+ Y+ + ER + ++ L GK V+V +N+L EG D Sbjct: 233 TRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDTGKLQVIVNVNVLTEGFDSQP 292 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 V +L SK+SLIQ +GR R ++ Sbjct: 293 ISCVILLRGSS-----SKSSLIQMVGRGLRKLD 320 >gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404] gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404] Length = 665 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A + GL I+ T TKRMA+ L ++LY++ +H + ER + + + G +LV Sbjct: 440 ANENGLTIVFTE-TKRMADQLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 498 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP G V D + + IGR R N + Sbjct: 499 ATAVAARGLDIPNVGHVINFDLPSD-----IDDYVHRIGRTGRAGNVGI 542 >gi|297199959|ref|ZP_06917356.1| ATP-dependent helicase [Streptomyces sviceus ATCC 29083] gi|297147542|gb|EDY54463.2| ATP-dependent helicase [Streptomyces sviceus ATCC 29083] Length = 971 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR ++ V D++ + +R L +T++ A + + E I+ + SE K R Sbjct: 470 ARIVIKQVRDKV--SDPTNMRALGFCVTRKHAHFMAKCFQEAGIKAAALDSESKPEIRER 527 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 I+ +L+ G+ V+ ++L EGLDIP+ + +L S T +Q +GR R Sbjct: 528 ILAELKAGELQVIFSVDLFNEGLDIPDVDTLLLLRPTN-----SATVFLQQLGRGLRRTP 582 Query: 684 SKVIL 688 K +L Sbjct: 583 DKPVL 587 >gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] Length = 445 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 21/149 (14%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ K +D+ + L + I MHS++ ER E++ + G+ DVLV +++ Sbjct: 229 RVIIFSGKKDKVKDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVS 288 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 G+DI + +V D D E + I IGR AR AD K+I L Sbjct: 289 RGIDIDDIRMVINYDVPHDVEDY-------IHRIGRTAR---------ADRDGKAITLVS 332 Query: 702 DETT---RRREKQLEHNKKHNINPQSVKE 727 DE ++ E+ LE NP ++ E Sbjct: 333 DEDMFYFQQIEQFLEKTIDKTPNPDNIGE 361 >gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 589 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V T+ AE++ L R I + +V ER I+ LR G DVLV ++ G Sbjct: 263 IVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVAARG 322 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 LD+ GLV D +E + + I GRA R N+ L Sbjct: 323 LDVERIGLVVNFDVPRE--VETYVHRIGRTGRAGRTGNALTFL 363 >gi|321477029|gb|EFX87988.1| hypothetical protein DAPPUDRAFT_311480 [Daphnia pulex] Length = 711 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%) Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S++ + + +I+RD R G ++LV ++L EG+DIPEC L+ D +R+ +Q Sbjct: 455 SQILNMNQKDIMRDFRSGNCNLLVATSVLEEGVDIPECNLIVRFDK-----IRTYCDYVQ 509 Query: 674 TIGRA 678 T GRA Sbjct: 510 TKGRA 514 >gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2] gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2] Length = 858 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 16/146 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLR 629 L Q G R+++ ++ AE LTE+L E R++ + E+ E + R Sbjct: 366 LGIQNGERVIVFTESRDTAEALTEFLSESFSVRRFVGQGDREGSDGMTQNEQQETLDKFR 425 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688 G+F+VLV ++ EGLD+PE LV + + + IQ GR R + + V+L Sbjct: 426 NGEFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQRKGRTGRQADGRVVVL 480 Query: 689 YADTITKSIQLAIDETTRRREKQLEH 714 A+ I +RRREK +++ Sbjct: 481 LAEDTRDEAYFWI---SRRREKTMQN 503 >gi|254570837|ref|XP_002492528.1| Putative protein of unknown function [Pichia pastoris GS115] gi|238032326|emb|CAY70349.1| Putative protein of unknown function [Pichia pastoris GS115] gi|328353460|emb|CCA39858.1| hypothetical protein PP7435_Chr3-0907 [Pichia pastoris CBS 7435] Length = 682 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L + K+ +DL E I+ ++ LER +II++ GK +VL+ N+ EG Sbjct: 315 LFFCVNKQHVQDLCELFCANGIKAGFVSGNTPLLEREQIIKNFIDGKLNVLMNCNVFTEG 374 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 DIP + +L K S+ L Q IGR R + K Y + I+ Sbjct: 375 TDIPNIDSIFLLRPTK-----SRPLLSQMIGRGLRLHSGKTKCYVTDFVGTTHSGIN 426 >gi|323934327|gb|EGB30747.1| DEAD/DEAH box helicase [Escherichia coli E1520] Length = 519 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E L Q L + V KR + L E + E +RV +++ E R + L Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQTTRQAKLNSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLR 461 >gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis] gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis] Length = 602 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 +YD+ + +I++ V TK+ ++L ++ + V +H + ++R ++ D R Sbjct: 351 IYDQSGMPG----KIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRS 406 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 G+ ++LV ++ GLD+ G+ +++ D F +S I IGR R +S YA Sbjct: 407 GRANILVATDVAARGLDVD--GIKYVINFD---FPQSSEDYIHRIGRTGRK-HSTGTSYA 460 Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 K+ + A R ++ NINP+ Sbjct: 461 FFTRKNAKCA------RALIEILREANQNINPE 487 >gi|315928208|gb|EFV07525.1| type III restriction enzyme, res subunit family [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929755|gb|EFV08925.1| type III restriction enzyme, res subunit family [Campylobacter jejuni subsp. jejuni 305] Length = 313 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297 >gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium linens BL2] Length = 606 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 13/165 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TK+ E+L E L R + ++ ++ R I LR GK D+LV ++ Sbjct: 258 IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAAR 317 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ LV D D E ++ I GRA R + + IL+ + + +I+ Sbjct: 318 GLDVERITLVVNFDIPHDTESYVHR----IGRTGRAGR--SGEAILFVTPREQRLLGSIE 371 Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 T+++ +QL+ + V EK + ID +L ATT ++ Sbjct: 372 RATKQKVEQLKMPSVEELTNTRV-EKFTKRIDDVL----ATTELT 411 >gi|325685734|gb|EGD27812.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 453 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+M ++L +YL ++ ++V +H + ER +R++R G++ +V +L G+D+P Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + KE +I IGR RN Sbjct: 313 VSLVINYEIPKE-----LEFIIHRIGRTGRN 338 >gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon 137 str. F0430] Length = 1094 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 21/210 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 G GS K +A + RP AIV A + L A + P D Y+ Sbjct: 32 GCAGSLKHAAVAAAYDGTPRPLAIVTAGRESLRA-WQEDLTALLPEA---------DVYE 81 Query: 234 PEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCIYGIG-SVESY 290 +P D + + ++R R + LL R IV++ + G S + Sbjct: 82 ----LPELDYALAAVQGAAKGMERAAQRMNILGRLLRREPIIVLADIGAAAQKGLSAAEF 137 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVAWR 349 S+ + L++GD++ ++ELL+ +V Y+ G F V G ++IFP + L + R Sbjct: 138 SRASLSLRLGDTLVREELLARMVGMGYEHAAEVEHVGQFSVRGGIVDIFPINALSPI--R 195 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F +I+ + E+ +T + I+N+ T I Sbjct: 196 IEFFDAEIDSMREYDAVTRRSIKNISTASI 225 Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 23/135 (17%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 RM E L + E I + LE +++ D G +D+L+ +++ G+D+ Sbjct: 776 RMREHLLRLVPEARIATAHGQMNEDILE--QVMMDFYEGHYDILLATSIIENGIDVANAN 833 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 V I DAD+ G + L Q GR R S ++A T RR+K L Sbjct: 834 TVIIYDADRFGL----SQLYQMRGRVGR---------------SAKMAFAYFTYRRDKVL 874 Query: 713 EHNKKHNINPQSVKE 727 + + Q++KE Sbjct: 875 SETAEKRL--QAMKE 887 >gi|61657395|emb|CAI44311.1| primosomal protein N [Thermotoga petrophila] gi|61657527|emb|CAI44438.1| primosomal protein N [Thermotoga sp. RQ2] Length = 748 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%) Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGL 646 T T+R+ +L Y R I R V + +E I L G+ D+LVG L+ + L Sbjct: 515 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 573 Query: 647 DIPECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688 +PE GLV I+D D F LR+ ++Q +GRA+R K I+ Sbjct: 574 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 622 >gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC 9812] gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC 9812] Length = 1165 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/305 (19%), Positives = 128/305 (41%), Gaps = 29/305 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++G+ K +A +A + +V+ + +L S+ + V F + D Sbjct: 26 QLIMGLSGASKALAIASAYQANEEKIVVLTSTQHEVEKLASDLSGLIGEDKVYTFFA--D 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E ++ ++ + +L + S V + + ++Y Sbjct: 84 DVAAAEFIFAS---MDKAHSRLEALNFLQDTTQTGIL------ITSLVGTRVLLPNPKAY 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ ++ +G+ +++ L YK+ + G F GD ++I+ D +R+ Sbjct: 135 AESQLKFVVGEDYNLDKVVKVLSNVGYKKVSQALNPGEFSRRGDIVDIYEV-TADYPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++++ I EF T + + NV+ + IY + A + Sbjct: 194 EFFGDEVDGIREFDAETQKSLSNVDQVTIYPADELILSEEDFTRASTAFE---------- 243 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 + LE + Q Y E+ TT ++ R+L+ E TL +YIP+ + Sbjct: 244 ----KYLETAKDAQH-AYLSELYATTQEHYRHQDIRRFLSLFYAKE--WTLLDYIPKGTP 296 Query: 471 LFVDE 475 +F D+ Sbjct: 297 VFFDD 301 >gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274 str. F0058] gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274 str. F0058] Length = 1109 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 29/219 (13%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+ S ++ +A+++ + +++A + A Y + + V +F ++Y + Sbjct: 33 LQGLRASAQSVAIAEMLRHTDKNILLVADDGDGAGYAYFDIVQLLGNERVAFFPAFYKHN 92 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS--------SVSCIYGI 284 ++I E + +R + + +N CI+VS V+ Y + Sbjct: 93 HKSG------------ATIAEN-EILRTDSLNKISGKNPCIIVSYPEALVEKVVASSYFV 139 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 GS ++L+ G S + L+ L K ++ D G + G ++IF S+ Sbjct: 140 GSK-------IELRKGQSYDMNSLVGQLQKAGFEEVDFVYEVGQYSQRGSIVDIF-SYSN 191 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 ++ +RV FG++IE I F + +V++I I AN+ Sbjct: 192 ELPYRVDFFGDNIESIRMFDIERQLSVSSVDSIDIVANT 230 >gi|227513680|ref|ZP_03943729.1| ATP-dependent DNA helicase/translocase [Lactobacillus buchneri ATCC 11577] gi|227083091|gb|EEI18403.1| ATP-dependent DNA helicase/translocase [Lactobacillus buchneri ATCC 11577] Length = 442 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 + + IN +Q R LL V + ++ L + NI Y+ +R+E + + Sbjct: 296 KSILQMINRLVKQKQRFLLFVPRIKDLTLVSNALEKANINCTYLTVYSADPQRLEKVTAM 355 Query: 629 RLGKFDVLVGINLLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV---NS 684 R D L+ +L G+ P G+ V +L AD E F S ++L+Q GR RN Sbjct: 356 RSQSVDFLITTTILERGVTFP--GIDVMVLKADDEVF--STSALVQIAGRVGRNSARPTG 411 Query: 685 KVILYADTITKSIQ 698 +VILY +T +K+I+ Sbjct: 412 QVILYCETKSKTIK 425 >gi|15642952|ref|NP_227993.1| primosomal protein N' [Thermotoga maritima MSB8] gi|8928309|sp|Q9WY22|PRIA_THEMA RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent helicase priA; AltName: Full=Replication factor Y gi|4980673|gb|AAD35271.1|AE001702_11 primosomal protein N' [Thermotoga maritima MSB8] Length = 736 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%) Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGL 646 T T+R+ +L Y R I R V + +E I L G+ D+LVG L+ + L Sbjct: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 Query: 647 DIPECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688 +PE GLV I+D D F LR+ ++Q +GRA+R K I+ Sbjct: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 >gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica] gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica] Length = 401 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + L E + E N V MH ++ ER EI+R+ R Sbjct: 260 DLYDTLTIT-----QAVIFCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 315 SGQTRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 360 >gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni] gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni] Length = 745 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 540 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 595 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 596 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 649 Query: 685 KVILYA 690 K +A Sbjct: 650 KGTSFA 655 >gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102] Length = 591 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 Q+ RIL+ L K+ A + +L + IRV +H ++K +R + + G+ VLV Sbjct: 425 QKNDRILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVAT 484 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 ++ GLDIPE LV + F + + IGR R N+ Sbjct: 485 DVAARGLDIPEVKLVINVT-----FPLTIEDYVHRIGRTGRAGNT 524 >gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505] gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505] Length = 865 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA ++ V TK AED+ L R I+ + +V ER ++ LR G DVL Sbjct: 396 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 455 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLD+ GLV D +E + + IGR R Sbjct: 456 VATDVAARGLDVDRIGLVVNFDVPRE-----AEAYVHRIGRTGR 494 >gi|145603330|ref|XP_369345.2| hypothetical protein MGG_06119 [Magnaporthe oryzae 70-15] gi|145011584|gb|EDJ96240.1| hypothetical protein MGG_06119 [Magnaporthe oryzae 70-15] Length = 643 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT+ E I R++ + +ER E + + R GKF VLV + EG DIP V + Sbjct: 285 LTQKFREFGIDARFVTGDTHKVERSERLEEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLA 344 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 K S+ L+Q IGR R Sbjct: 345 RPTK-----SRNLLVQMIGRGMR 362 >gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis] gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis] Length = 733 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 518 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 573 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 574 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 627 Query: 685 KVILYA 690 K +A Sbjct: 628 KGTSFA 633 >gi|18976498|ref|NP_577855.1| DNA repair protein rad25 [Pyrococcus furiosus DSM 3638] gi|18892045|gb|AAL80250.1| DNA repair protein rad25 [Pyrococcus furiosus DSM 3638] Length = 444 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 ++G R+L+ V E L + L ER I+ ++ S+ + R EI+ + G+ VLV Sbjct: 311 VRRGHRVLIDVKRIDHGEMLAKMLKERGIKAEFLSSQ--SPNRWEILEKYKKGEIQVLVS 368 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LL+EG+DIPE + + K S IQTIGRA R Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 404 >gi|307824309|ref|ZP_07654535.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96] gi|307734689|gb|EFO05540.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96] Length = 699 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 12/118 (10%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 ++ AE LTE L N+RV +H +K+ E+ +++D + + D+LV ++ G+D+P Sbjct: 510 AEKTAETLTEAL--PNVRVALIHGRMKSAEKDAVMQDFKNHRIDLLVATTVIEVGVDVPN 567 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 GL+ I + ++ G + L Q GR R + L Q + +T R R Sbjct: 568 AGLMIIENPERLGL----SQLHQLRGRVGRGGDDSYCLLM------YQAPLSDTARHR 615 >gi|257439260|ref|ZP_05615015.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii A2-165] gi|257198302|gb|EEU96586.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii A2-165] Length = 698 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 ED+ + L + RV MH ++K E+ ++ D + G+ D LV ++ G+D+P ++ Sbjct: 509 EDIAKALLP-DRRVGLMHGKLKPKEKAAVMDDFKAGRLDALVSTTVIEVGVDVPNATVMV 567 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698 I +A++ G ++L Q GR R S L +D +S+Q Sbjct: 568 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNTAESVQ 607 >gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247] gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247] Length = 1195 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 23/210 (10%) Query: 161 LKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 + GI +R ++V + L + + F +A + + P +V++ N A L +E Sbjct: 20 ISGIRARRDEVHVDLTAPDAARPFVVACLAKDADAPLLVVSANGREADDLTAELAELLDE 79 Query: 220 -NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 +AV F S+ + E P DT + + ++ R+ + L +VV++V Sbjct: 80 PDAVAQFPSW-ETLPHERLSPSADTVGARLAVLH----RLANPGDSPLR-----VVVTTV 129 Query: 279 SCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 + G+G V + S L G ++ LL+ LV+ Y+R D+ RG F V G Sbjct: 130 RSLVQPMAPGLGDVATIS-----LAEGFEIDFDGLLTDLVEMAYERVDMVGRRGEFAVRG 184 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +++FP+ D RV +G++I E+ F Sbjct: 185 GILDVFPT-TADYPVRVEFWGDEITEMRAF 213 >gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura] gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura] Length = 738 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 532 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 587 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 588 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 641 Query: 685 KVILYA 690 K +A Sbjct: 642 KGTSFA 647 >gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae] Length = 670 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V+ R+A D E NL L+ V TKR A+ L E+LY R V +H + Sbjct: 430 VDKRNALLDFIDFTKEDNLT-------LVFVETKRGADSLEEFLYNREFSVSSIHGDRTQ 482 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQT 674 ER +++ R GK ++V + GLDIP V D D + ++ +T + Sbjct: 483 DERERALKNFRSGKTPIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRVGN 542 Query: 675 IGRAARNVNSK 685 +G+A N K Sbjct: 543 LGKATSFFNDK 553 >gi|325923075|ref|ZP_08184770.1| helicase family protein with metal-binding cysteine cluster [Xanthomonas gardneri ATCC 19865] gi|325546467|gb|EGD17626.1| helicase family protein with metal-binding cysteine cluster [Xanthomonas gardneri ATCC 19865] Length = 831 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDNDPRKPPRIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGNIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|223044305|ref|ZP_03614340.1| phage deah-family helicase [Staphylococcus capitis SK14] gi|222442273|gb|EEE48383.1| phage deah-family helicase [Staphylococcus capitis SK14] Length = 445 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +GL+ ++ ++ + E + ++ KT ER+E+++ R G+ D+L Sbjct: 215 KGLKTIVYAYNVESSKRVAEQFKNKGYNAYHLDGNAKTHERLEVVQKFRDGEIDILTNAE 274 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L EG DIP+C V +L + S + IQ RA R Sbjct: 275 LFGEGFDIPDCHCVILLRPTE-----SLSLFIQQTMRAMR 309 >gi|148269882|ref|YP_001244342.1| primosomal protein N' [Thermotoga petrophila RKU-1] gi|170288567|ref|YP_001738805.1| primosomal protein N' [Thermotoga sp. RQ2] gi|147735426|gb|ABQ46766.1| replication restart DNA helicase PriA [Thermotoga petrophila RKU-1] gi|170176070|gb|ACB09122.1| primosomal protein N' [Thermotoga sp. RQ2] Length = 736 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%) Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGL 646 T T+R+ +L Y R I R V + +E I L G+ D+LVG L+ + L Sbjct: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 Query: 647 DIPECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688 +PE GLV I+D D F LR+ ++Q +GRA+R K I+ Sbjct: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 >gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata HTCC2501] gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata HTCC2501] Length = 1121 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/192 (22%), Positives = 89/192 (46%), Gaps = 14/192 (7%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+TGS +F +A+ +A P +V+ +K AA + ++ + + V ++ Y Sbjct: 32 LDGLTGSSLSFVVAETFKAQVCPMLVLLGDKEEAAYVLNDLEELLGRDNVLFYPG--SYR 89 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYS 291 +P E E + N + +R + ++VS ++ + + + S Sbjct: 90 RP----------YEIEETDNANVLLRAEVLSRISSRKKPALIVSYPDALFEKVVTRKELS 139 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + +++++GD++ L +L + +KR D G F V G +++F S D +R+ Sbjct: 140 RNTLKVRVGDNLSLDFLNETLFEYHFKRVDFVTEPGEFSVRGGIVDVF-SFSHDEPYRLE 198 Query: 352 MFGNDIEEISEF 363 FG++I+ I F Sbjct: 199 FFGDEIDSIRSF 210 Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 15/157 (9%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYER---NIRVRYM 612 P+E R R E + D I Q+G ++ E++ E L +R + RV Sbjct: 741 PIESRVVRFGEEVIRDAIRYEIQRGGQVFFV---HNRIENIAEVAGLIQRLVPDARVGIG 797 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H +++ + +++ D G+FDVLV ++ GLD+ + I +A+ G + L Sbjct: 798 HGQMEGKKLEKLMLDFMNGEFDVLVSTTIIESGLDVTNANTILINNANNFGL----SDLH 853 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 Q GR R+ N K Y IT + E +R E Sbjct: 854 QMRGRVGRS-NKKAFCY--FITPPYHVMTAEARKRME 887 >gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] Length = 581 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 V T+ AE++ L +R I ++ +V +R I+ LR G DVLV ++ GLD+ Sbjct: 261 VRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVATDVAARGLDV 320 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLV LD +E + + IGR R Sbjct: 321 ERIGLVVNLDLPRE-----PEAYVHRIGRTGR 347 >gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1] gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1] Length = 1205 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 23/256 (8%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+T S + + ++ P ++ + AA+ +E FF H A + + Sbjct: 12 LTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFF-HGAAQLPHAQTTLV 70 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRM-RHSATRSLLERND------------------CI 273 PE+ +P E ++ N++ + + ATRSL I Sbjct: 71 FPES-MPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGATALPPLVI 129 Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V + + + + ++E ++ L G + + LL L + Y + + G + + G Sbjct: 130 VTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGHYAIRG 189 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+++P + +R+ FG++IE I EF P+T + VE+I I A+S V P+ Sbjct: 190 GIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSR-VRLDPSKT 247 Query: 394 TAMKYIKEELKMRLIE 409 Y+ + LIE Sbjct: 248 GIADYLSPRTHLVLIE 263 Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A L E + + I V + E LE E++ + G++ +LV ++ GLDIP C Sbjct: 839 VAARLRELMPDVTIGVGHGQMEAADLE--EVMTEFVAGRYQLLVCTTIIESGLDIPNCNT 896 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680 + I AD+ G + L Q GR R Sbjct: 897 ILIEGADRFGL----SQLYQLRGRVGR 919 >gi|188574426|ref|YP_001911355.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518878|gb|ACD56823.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 831 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ + Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|57237518|ref|YP_178532.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221] gi|57166322|gb|AAW35101.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221] gi|315057884|gb|ADT72213.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni S3] Length = 607 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E + ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAHQLYEEAKKFLP 297 >gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia amoebophila UWE25] gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus Protochlamydia amoebophila UWE25] Length = 1101 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 I+ S +C+ + + ++ ++ + LK +S +L+ L Y+R+ I +G F V Sbjct: 117 IILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIASDKGEFAV 176 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 G I++FP D +R+ +G+D+E I + P+ +R VE I I Sbjct: 177 RGGIIDVFPVSSPD-PYRLEFWGDDLESIRIYDPIGQISVRAVEQIDI 223 >gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis] gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis] Length = 724 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 512 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 567 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 568 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 621 Query: 685 KVILYA 690 K +A Sbjct: 622 KGTSFA 627 >gi|21240852|ref|NP_640434.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21106124|gb|AAM34970.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 802 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 210 PQFILCSATIGN-PHAHAQALIEEQVHGITESGAPTGDKHVLLWNPPVVNADLGLRASAR 268 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 269 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 325 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 326 TERREVERAMRAGNIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 380 Query: 679 AR 680 R Sbjct: 381 GR 382 >gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium 4_1_37FAA] Length = 1115 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 20/245 (8%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G GS KT + + IV + A Q+Y E++ F Y Sbjct: 34 GCVGSQKTHLTCALGSDCKYKLIVTSGES-KAKQMYEEYR-FLKETVYLY---------- 81 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293 P D +Q+ R ++LL C V+++ + +E+ + Sbjct: 82 ----PAKDLLFYHADLRGKQLVSSRMETIQALLLGEGCTVITTFDAFMDSLLPIETIRER 137 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 I LK+GD ++ +++ L Y+R+ G F V G ++++P E+V R+ ++ Sbjct: 138 IFSLKVGDIIDFEKVQKDLALLGYEREVQIEGPGQFAVRGGILDVYPL-TEEVPVRIELW 196 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 ++I+ I F + + I N+E I IY S ++ + + + Y E L+ LE+ Sbjct: 197 DDEIDSIRTFDVESQRSIENLEEITIYPASEFMDEKTKRVSFLDYFPRE--DTLLFLEEP 254 Query: 414 GRLLE 418 RL+E Sbjct: 255 ARLIE 259 >gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis DSM 12112] Length = 900 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 + K+ + + E+L LV+ YK++ + +G F + GD I+I+PS+L D R+ F Sbjct: 102 EFKVNEEYSRDEILKYLVENGYKKEYTVLNKGEFAIRGDIIDIYPSNL-DNPIRLDFFDT 160 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +E I F + I N+E I ++ N R ++ + K +++ L E + Sbjct: 161 ILENIKIFSTYDQRSIENIEEITVFGNVLSGMEREIVDMISIFSKGNIEIFL-----ENK 215 Query: 416 LLEAQRLEQRITYD 429 +LEQ + +D Sbjct: 216 EFLEVKLEQMLMFD 229 >gi|84621802|ref|YP_449174.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84365742|dbj|BAE66900.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 831 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ + Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425] gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425] Length = 1169 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 27/204 (13%) Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV + + + V ++ + L G +E K L L + Y+R + G + Sbjct: 126 AIVATERALQPHLPPVAAFQPDCLTLTQGMEMELKPLSDRLAQLGYERVALVETEGQWSR 185 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 GD I++FP E + R+ FG+++++I EF P T + + +++ + + S P Sbjct: 186 RGDIIDVFPVACE-LPVRLEWFGDELDKIREFDPATQRSLDSIDQLILTPTSF----SPI 240 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 + +A++ EAQR + + E E + Q+ E R+L G Sbjct: 241 ILSALQ--------------------EAQRQQLKTVLAPEEQEKLATGQTPEGMRRFL-G 279 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475 P +L +Y+P+++L+ +DE Sbjct: 280 LAFAH-PASLLDYLPDNTLIAIDE 302 >gi|255023011|ref|ZP_05294997.1| transcription-repair coupling factor [Listeria monocytogenes FSL J1-208] Length = 284 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 18/280 (6%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +LK + +EK QL+ G+TGS + + V A +RP + + N A +LY + Sbjct: 14 IRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDD---- 69 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 +S D + Y P + + S + ++ R A LL IV+ Sbjct: 70 --------LLSLMDVDRLFLY-PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +K +++++ L EL KE + Q L + + DLEML + Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLRS 276 >gi|254236235|ref|ZP_04929558.1| hypothetical protein PACG_02203 [Pseudomonas aeruginosa C3719] gi|126168166|gb|EAZ53677.1| hypothetical protein PACG_02203 [Pseudomonas aeruginosa C3719] Length = 1448 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388 >gi|86153829|ref|ZP_01072032.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842790|gb|EAQ60002.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni HB93-13] Length = 607 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E + ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAHQLYEEAKKFLP 297 >gi|218890535|ref|YP_002439399.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa LESB58] gi|218770758|emb|CAW26523.1| probable ATP-dependent DNA helicase [Pseudomonas aeruginosa LESB58] Length = 1448 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388 >gi|254241959|ref|ZP_04935281.1| hypothetical protein PA2G_02683 [Pseudomonas aeruginosa 2192] gi|126195337|gb|EAZ59400.1| hypothetical protein PA2G_02683 [Pseudomonas aeruginosa 2192] Length = 1448 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388 >gi|116051286|ref|YP_789882.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|115586507|gb|ABJ12522.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa UCBPP-PA14] Length = 1448 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388 >gi|319939812|ref|ZP_08014168.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV] gi|319811025|gb|EFW07340.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV] Length = 671 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+L Y ++ V +H ++K+ E+ I++D + GK D+LV ++ G+++P + Sbjct: 484 LEEELKAYFGDKT-HVALLHGKMKSDEKDAIMQDFKEGKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T+S Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582 >gi|294625564|ref|ZP_06704190.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600129|gb|EFF44240.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 831 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|166710033|ref|ZP_02241240.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 831 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ + Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|86151660|ref|ZP_01069874.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 260.94] gi|315124010|ref|YP_004066014.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841289|gb|EAQ58537.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 260.94] gi|315017732|gb|ADT65825.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 607 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS++ K ++++G G GKT + Sbjct: 213 FNIANWIKDLPF-------SLTKDQLNALKDIEKDLHSKDAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297 >gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC 367] gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase) [Lactobacillus brevis ATCC 367] Length = 1180 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 22/249 (8%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q A I Q L G+ R QL+ G+ GS +T +A ++ QR + + LY Sbjct: 12 QYATIRQTL-GVGQR---QLVTGLNGSAETLFIASLLHEQQRSLVYVTDT------LYHA 61 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + +D+ P + + ++ + + R A R+L Sbjct: 62 SQLVDDLANLLDDDELFDF-------PVEELLAAEVATSSPEYRSARIDALRALQSDRPV 114 Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV+S+S + + + +++ + +GD + + L L Y Q + G F V Sbjct: 115 VVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAV 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP--- 388 G I+I+P D R+ F +++ + F P T + I N +T+++ + ++ Sbjct: 175 RGSIIDIYPLA-ADYPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDFILTADE 233 Query: 389 RPTLNTAMK 397 R T TA++ Sbjct: 234 RATGATALR 242 Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y+H ++ + ++ D G +DVLV ++ G+DIP + + +AD+ G Sbjct: 856 RVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMGL--- 912 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 913 -SQLYQLRGRIGRS 925 >gi|107102803|ref|ZP_01366721.1| hypothetical protein PaerPA_01003871 [Pseudomonas aeruginosa PACS2] Length = 1449 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 256 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 315 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 316 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 370 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 371 RSIAAFLQRVGRSGHSVGG 389 >gi|220980020|emb|CAP72212.1| Putative helicase [Escherichia coli LF82] Length = 519 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E L Q L + V KR + L E + E +RV +++ E R + L Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQSTRQAKLNSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLR 461 >gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi] gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi] Length = 977 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 N AA G +I++ V TK ED+ + + +H + ER ++RD R GK ++ Sbjct: 487 NNAANAGNKIIIFVETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDFRNGKSNI 546 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ ++ GLD+ + V D + S + + IGR R Sbjct: 547 LIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 586 >gi|296388231|ref|ZP_06877706.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa PAb1] Length = 1449 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 256 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 315 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 316 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 370 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 371 RSIAAFLQRVGRSGHSVGG 389 >gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis] gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis] Length = 649 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 441 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 496 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 497 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 550 Query: 685 KVILYA 690 K +A Sbjct: 551 KGTSFA 556 >gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1186 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 15/220 (6%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 E V + VT + + + + + + +V++ N A L+ E +F P N + Sbjct: 64 EVVGSVYSVTTGSHSILASSLFQKLNQTILVVSENNTSAEFLFREALSFLPSNDL----- 118 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286 Y+P + + ++ R R A +L ++ +SVS + + Sbjct: 119 --------IYLPGQEVLPYEYMRYPSEMKRERIKAIAKILSGEPVLIFTSVSGFLKTLPP 170 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +++ + LK G ++ + LL L+ YKR + G F + G ++IF S+ + Sbjct: 171 IQTMQGRAIVLKKGKEIDLESLLIQLIDLGYKRVQVCETFGEFSLKGGILDIFSSYSTE- 229 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 R+ +FG +IE I F P + + + +++ + Y+ Sbjct: 230 PVRIDLFGEEIESIRTFDPDSQRSMTDLDQAVLLPADEYI 269 >gi|124485977|ref|YP_001030593.1| Hef nuclease [Methanocorpusculum labreanum Z] gi|124363518|gb|ABN07326.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum Z] Length = 763 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 15/102 (14%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+IE IR R G++ VLV ++ EGLDIP LV +A + S+ IQ GR Sbjct: 410 EQIEAIRQFREGEYTVLVATSVGEEGLDIPSTDLVIFYEA-----VPSEIRSIQRKGRTG 464 Query: 680 RNVNSKVILYADTITKSIQLAIDETTR----RREKQLEHNKK 717 RN K+I+ +T+ DET R REKQ++ K Sbjct: 465 RNSTGKIIVL---VTRG---TTDETYRWVSNTREKQMQKGVK 500 >gi|222823694|ref|YP_002575268.1| ATP-dependent DNA helicase [Campylobacter lari RM2100] gi|222538916|gb|ACM64017.1| ATP-dependent DNA helicase [Campylobacter lari RM2100] Length = 607 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT-MAKVIEAMQR 194 DI+ + +++P+ DQ AI + K + S+ K ++++G G GKT +A + + Sbjct: 211 DISSWLKGLEFNPTNDQLLAIEDIKKDLQSKVAKRRVVMGDVGCGKTLIILAASLLVYPK 270 Query: 195 PAIVMAPNKILAAQLYSEFKNFFP 218 AI+MAP ILA Q+Y E K P Sbjct: 271 KAILMAPTSILAEQIYHEAKRLLP 294 >gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270] gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270] Length = 1168 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 77/418 (18%), Positives = 169/418 (40%), Gaps = 38/418 (9%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 + +++ N+ A +L E K+ V Y P + +S+ Sbjct: 52 KNLVLLVENENRANELCDELKSLVGDKVVVY--------------PNFEIRFHNINSLET 97 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSL 312 ++ +R LL + I++++ S + I + + + + + V KEL +L Sbjct: 98 NLENIRIEIMNRLLSKEKFIIITTASALSKKISTPKFFKSHYIYIDENLEVNLKELTENL 157 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 +K Y R D +G F + G +IFP + ++ R+ +FG+DI+ I F + + + Sbjct: 158 IKMHYDRVDFVEAKGQFSIRGSIFDIFPVNFKN-PIRIELFGDDIDSIRIFDINSQRSVE 216 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE--AQRLEQRITYDL 430 + ++I V + + + + ++++ +L +L+ G+ +E ++ Q I DL Sbjct: 217 KLNKVEIIPAKEMVLSKSDVENILNGLNKDIE-KLQKLKLFGKDIEKSTEKFYQ-IYNDL 274 Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490 ++ + I Y R TL +Y+ +DS++ E + I + Sbjct: 275 KINYHISNMDLISPYIR-------KGSYSTLLDYLAQDSII-CTEDILKIYDKNLEIENL 326 Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550 FH + ++N + + L P ++ + Q + +II Sbjct: 327 FHENVVFS---------IENAEILDSHKDILIPFEHILRRIKDFSIINFTQLLKRTKIIN 377 Query: 551 PTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 P +++ +E + + ++ + Q+G +I++ + A +L E LY NI Sbjct: 378 PKSIINLKTIEAEIFNRKFDLLFQNLKSKLQRGYKIVIFAGSLEKANNLKEILYAENI 435 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ HS++ E I+ D + G++D+L+ ++ G+DI C + I DADK G Sbjct: 863 KIAMAHSKLSNKELENIMYDFQEGEYDILLCTTIIETGMDIKNCNTMIIYDADKMGL--- 919 Query: 668 KTSLIQTIGRAAR 680 + L Q GR R Sbjct: 920 -SQLYQLKGRIGR 931 >gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae A909] gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae A909] gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1165 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 137/307 (44%), Gaps = 33/307 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +G+ K +A E + + +V+ + + +L S+ + + V Y Sbjct: 26 QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 ++ + VP + SS+++ I R+ SA R L E+N ++ S + + E Sbjct: 80 FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +S+ + +IG +L +LV Y++ G F GD ++IF ++ + Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ FG++I+ I +F T + ++ +E+++I + A K + Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 EG L+ A +++ Y E+L T + + R+L+ E + +YIPE Sbjct: 243 ----EGYLVTASEVQR--AYLSEVLSATENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294 Query: 469 SLLFVDE 475 + LFVD+ Sbjct: 295 TPLFVDD 301 >gi|17230443|ref|NP_486991.1| hypothetical protein all2951 [Nostoc sp. PCC 7120] gi|17132045|dbj|BAB74650.1| all2951 [Nostoc sp. PCC 7120] Length = 517 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LRIL +L K A++ T Y +++ + + + ER EI+ Sbjct: 315 EIALGTDSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV- 682 R G+++ LV ++L EG+D+P + IL S IQ +GR R N+ Sbjct: 375 TKFREGEYNTLVASHVLNEGVDVPAAAIAIILSGTG-----STREYIQRLGRILRKGNIQ 429 Query: 683 NSKVILY 689 N + ILY Sbjct: 430 NKQAILY 436 >gi|256545262|ref|ZP_05472627.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170] gi|256399089|gb|EEU12701.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170] Length = 659 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 +NIR+ +H ++K E+ EI+RD GK D+L+ ++ G+D+ + I +A+ G Sbjct: 484 KNIRIEKLHGKLKASEKEEILRDFSDGKIDILISTTVIEVGIDVSNANCMIIYNANNFGL 543 Query: 665 LRSKTSLIQTIGRAAR 680 +SL Q GR R Sbjct: 544 ----SSLHQLRGRIGR 555 >gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis] gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis] Length = 554 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 +++D+ I A +I++ V TK+ ++L ++ + V +H + ++R ++ Sbjct: 353 AKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVL 412 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D R G+ ++LV ++ GLD+ G+ +++ D + +S I IGR R + SK Sbjct: 413 NDFRSGRANILVATDVAARGLDVD--GIKYVINFD---YPQSSEDYIHRIGRTGRKL-SK 466 Query: 686 VILYADTITKSIQLA 700 YA K+ + A Sbjct: 467 GTSYAFFTRKNARCA 481 >gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae] gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae] Length = 704 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 ++ + D+YD ++ +I++ V TKR ++L ++ +R +H + ER + Sbjct: 502 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 557 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 +R+ R GK ++LV ++ GLD+ G+ +++ D + ++ I IGR R+ N+ Sbjct: 558 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 611 Query: 685 KVILYA 690 K +A Sbjct: 612 KGTSFA 617 >gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Streptococcus pyogenes M49 591] Length = 1167 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G++ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGENYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E I I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|269103906|ref|ZP_06156603.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163804|gb|EEZ42300.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp. damselae CIP 102761] Length = 693 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A DLTE L E +++ +H +K E+ I+ + G+ D+LV ++ G+D+P L+ Sbjct: 508 AADLTEKLPE--LKIGLVHGRMKAQEKQHIMAQFKAGELDLLVATTVIEVGVDVPNSSLM 565 Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSK-VILYADTITKSIQ 698 I + ++ G L Q GR R N+ S V+LY ++K+ Q Sbjct: 566 VIENPERLGL----AQLHQLRGRVGRGNIASHCVLLYKSPLSKTAQ 607 >gi|58579789|ref|YP_198805.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424383|gb|AAW73420.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 865 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ + Q +I EQ+ PTG L +PPV +R SAR Sbjct: 273 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 331 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 332 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 388 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 389 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 443 Query: 679 AR 680 R Sbjct: 444 GR 445 >gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans serovar Lai str. 56601] gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans serovar Lai str. 56601] Length = 1186 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 15/220 (6%) Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 E V + VT + + + + + + +V++ N A L+ E +F P N + Sbjct: 64 EVVGSVYSVTTGSHSILASSLFQKLNQTILVVSENNTSAEFLFREALSFLPSNDL----- 118 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286 Y+P + + ++ R R A +L ++ +SVS + + Sbjct: 119 --------IYLPGQEVLPYEYMRYPSEMKRERIKAIAKILSGEPVLIFTSVSGFLKTLPP 170 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +++ + LK G ++ + LL L+ YKR + G F + G ++IF S+ + Sbjct: 171 IQTMQGRAIVLKKGKEIDLESLLIQLIDLGYKRVQVCETFGEFSLKGGILDIFSSYSTE- 229 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 R+ +FG +IE I F P + + + +++ + Y+ Sbjct: 230 PVRIDLFGEEIESIRTFDPDSQRSMTDLDQAVLLPADEYI 269 >gi|325926824|ref|ZP_08188129.1| helicase family protein with metal-binding cysteine cluster [Xanthomonas perforans 91-118] gi|325542790|gb|EGD14248.1| helicase family protein with metal-binding cysteine cluster [Xanthomonas perforans 91-118] Length = 831 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM 10542] gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM 10542] Length = 1212 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 31/220 (14%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P+G +P +A + G + + + GV GS RP +V+ A + Sbjct: 34 PAGVRPPLLAAM-AGARASDGLVPETGVEGS--------------RPLVVVTATGREADE 78 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L S + + P++ V ++ + E PR+DT ++ + R+ H + + Sbjct: 79 LASALRCYLPYDDVAVLPAW-ETLPHERLSPRSDTVAKRIAVFR----RLAHPSADLGMT 133 Query: 269 RNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 ++V V + G+G +E V+L+ D + ++ L Y R D+ Sbjct: 134 GPVRVLVMPVRALLQPVVDGLGDLEP-----VRLETRDRADLADVADRLSAAAYARVDMV 188 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 RG F V G +++FP ED RV +G ++EEI F Sbjct: 189 ERRGEFAVRGGILDVFPP-TEDHPLRVEFWGEEVEEIRWF 227 >gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1113 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/254 (21%), Positives = 108/254 (42%), Gaps = 22/254 (8%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G GS KT + + IV + + A Q+Y E++ F Y Sbjct: 32 GCVGSQKTHLTCALGSDCKYKLIVTS-GESKAKQMYEEYR-FLKETVYLY---------- 79 Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293 P D +Q+ R ++LL C V+++ + +E+ + Sbjct: 80 ----PAKDLLFYHADLRGKQLVSSRMETIQALLLGEGCTVITTFDAFMDSLLPIETIRER 135 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 + LK+GD ++ +++ L Y+R+ G F V G ++++P E+V R+ ++ Sbjct: 136 VFSLKVGDIIDFEKVQKDLTLLGYEREVQIEGPGQFAVRGGILDVYPL-TEEVPVRIELW 194 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE---- 409 ++I+ I F + + I N+E I IY S ++ + + + Y E + +E Sbjct: 195 DDEIDSIRTFDVESQRSIENLEEITIYPASEFMDEKTKRVSFLDYFPREDTLLFLEEPAR 254 Query: 410 LEKEGRLLEAQRLE 423 L ++G +EA+ +E Sbjct: 255 LIEQGEAVEAEFIE 268 >gi|291557562|emb|CBL34679.1| Helicase subunit of the DNA excision repair complex [Eubacterium siraeum V10Sc8a] Length = 93 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 8/100 (8%) Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756 ++ A+ ET RRRE Q+++N++H I P+++ + + V++ +D Q+ + Sbjct: 1 MEKAVTETNRRREIQMKYNEEHGITPKTIVKDVRAVLEISSGKD--------KGQKRKYT 52 Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796 K + +A +K +M AA L+FE AA +RD+IK L+ S Sbjct: 53 KAEREALIKQYTAEMKNAAKLLDFEHAAYLRDKIKELQES 92 >gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601] gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601] Length = 1186 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 66/321 (20%), Positives = 139/321 (43%), Gaps = 25/321 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++K + ++ QL+ G++GS + + V A +R +++ N A +LY + ++ Sbjct: 21 IQSIIKALDDKKAAQLVTGLSGSARALFASVVESAGKRTVLIVTHNLYHAQKLYDDLESL 80 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVV 275 + + ++ D I E S++ ++ R + LL + +VV Sbjct: 81 VDKDKL--------------FLYPADELISSELSVSSPELRGQRVEVLQFLLSQKPGVVV 126 Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V+ + I +S + + + + G+ +E +L LV Y + G F V G Sbjct: 127 VPVAGLRRILPPKSLWQKNNLTITQGEEIEPNQLRERLVTMGYTASQMVNTPGEFSVRGG 186 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 I+++P E+ R+ +F +I+ + F T + + V T ++ + + + Sbjct: 187 IIDVYPI-TEEFPVRIELFDTEIDSLRYFDVETQRSQKKVNTFQLLPATEILIEQEDFPA 245 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 + +++ L L L K+ + Q L + I DLE+L + + Y ++ Sbjct: 246 IVTRLEKHLAASLQALSKDE---DKQTLMENIEEDLELLRSGIKPDMLFKYIGFIY---- 298 Query: 455 GEPPPTLFEYIPEDSLLFVDE 475 E TL +Y E+++L +DE Sbjct: 299 -EQQGTLLDYAAENTVLMLDE 318 Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV + H ++ E +I G++DVLV ++ G+DIP + + DAD+ G Sbjct: 866 DARVAFAHGQMTETELESVIVSFLEGEYDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 924 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R S I YA Sbjct: 925 ---SQLYQLRGRVGR---SNRIAYA 943 >gi|15598468|ref|NP_251962.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa PAO1] gi|9949397|gb|AAG06660.1|AE004749_9 probable ATP-dependent DNA helicase [Pseudomonas aeruginosa PAO1] Length = 1448 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605 R G+ PPV + + + E VYD + A + L+ V T+RMAE +T +L ER Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + +V H + R++ + L+ G+ VLV L G+DI + LV L + Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369 Query: 666 RSKTSLIQTIGRAARNVNS 684 RS + +Q +GR+ +V Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388 >gi|294666370|ref|ZP_06731617.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603867|gb|EFF47271.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 831 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120] gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120] Length = 770 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 66/320 (20%), Positives = 136/320 (42%), Gaps = 23/320 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +LK + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 V+ Y P + + S + ++ R A LL IV+ Sbjct: 74 ID---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKDFNISIAEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 ++ +++++ + L EL+++ + + E LE S + + +Y+ P Sbjct: 240 VQRLEKKMTLTLNELKEDA------DKQALVENLEEELEMLRSGVKPDMFFKYIGLAYPD 293 Query: 456 EPPPTLFEYIPEDSLLFVDE 475 P +LF+Y+P+++ + +DE Sbjct: 294 --PASLFDYLPKNTAILLDE 311 >gi|283954244|ref|ZP_06371768.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 414] gi|283794262|gb|EFC33007.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni 414] Length = 607 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQL 209 DQ A+ + K +HS E K ++++G G GKT + + + AI+MAP ILA QL Sbjct: 229 DQHNALKDIEKDLHSNEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAILMAPTSILAYQL 288 Query: 210 YSEFKNFFP 218 Y E K F P Sbjct: 289 YEEAKKFLP 297 >gi|148925843|ref|ZP_01809530.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|145844829|gb|EDK21933.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] Length = 612 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E + ++++G G GKT + Sbjct: 218 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLG 270 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K F P Sbjct: 271 AALMVYPKQAILMAPTSILAHQLYEEAKKFLP 302 >gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829] Length = 1198 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 20/213 (9%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 L ++ S + F +A A RP +++ + A + + + V Y Sbjct: 31 LNISQSARPFIVAACACAQARPILLVVSGEDAADRAARILAGWLGPDVVFR-------YP 83 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--IGSVESYS 291 A +P +D S + ++ R A L + C+VV+S + S++ Sbjct: 84 DRADLPWSD------KSASAEVCGTRAEALFHLAQPQRCVVVASARALLRRLPPKTSSFA 137 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDI-GIIR--GTFRVCGDSIEIFPSHLEDVAW 348 Q ++ IGD ++ L LV Y + +R G F V GDS+++F S E Sbjct: 138 QQ-QKICIGDELDIYALARQLVLWGYVSTTVVKEVREPGYFCVHGDSVDVF-SPCEQAPV 195 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 R+S FG++++EI + P TGQ I + + YA Sbjct: 196 RISFFGDEVDEIRKVVPSTGQTISSQQQAVFYA 228 >gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura] gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura] Length = 537 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 +++D+ I A +I++ V TK+ ++L ++ + V +H + ++R ++ Sbjct: 336 AKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVL 395 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D R G+ ++LV ++ GLD+ G+ +++ D + +S I IGR R + SK Sbjct: 396 NDFRSGRANILVATDVAARGLDVD--GIKYVINFD---YPQSSEDYIHRIGRTGRKL-SK 449 Query: 686 VILYADTITKSIQLA 700 YA K+ + A Sbjct: 450 GTSYAFFTRKNARCA 464 >gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 453 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+M ++L +YL ++ ++V +H + ER +R++R G++ +V +L G+D+P Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 313 VSLVINYEIPKD-----LEFIIHRIGRTGRN 338 >gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella timonensis CRIS 5C-B1] gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella timonensis CRIS 5C-B1] Length = 583 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 14/115 (12%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 +ED++ + +L R+++ +K + + L+ N+ MHS+++ +R E++ + Sbjct: 236 IEDIFKKGDLK-----RVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLN 290 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 + G+ DVLV +++ G+DI + +V D D E + + IGR AR Sbjct: 291 FKSGQLDVLVATDIVARGIDIDDISMVINYDVPNDAEDY-------VHRIGRTAR 338 >gi|166714756|gb|ABY88092.1| UvrB [Stenotrophomonas sp. LMG 10853] Length = 61 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 +++FP+ + A R+ +F ++E+IS F PLTG+ +R + IY +HY T R Sbjct: 2 VDVFPAESDSEAVRIELFEGEVEQISMFDPLTGESLRKMMRYTIYPKTHYATTR 55 >gi|104780391|ref|YP_606889.1| ATP-dependent DNA helicase Lhr [Pseudomonas entomophila L48] gi|95109378|emb|CAK14078.1| putative ATP-dependent DNA helicase Lhr [Pseudomonas entomophila L48] Length = 1424 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%) Query: 550 RPTGLVD-------------PPVEIRSA-RTQVEDV-YDEINLAAQQGLRILLTVLTKRM 594 RP +VD PPV + + T V DV YD + A++ L+ V T+R+ Sbjct: 230 RPCAIVDIGHVRHRDLALEVPPVPLGAVMATDVWDVVYDRLAALAREHRTTLVFVNTRRL 289 Query: 595 AEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AE LT +L ER N V H + R+ + L+ G+ VLV L G+DI E Sbjct: 290 AERLTRHLGERLGNDAVAAHHGSLAKEYRLAAEQRLKAGELQVLVATASLELGIDIGEVD 349 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 LV + + S + +Q +GR+ V+ Sbjct: 350 LVCQIASPG-----SIAAFLQRVGRSGHQVDG 376 >gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314] gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314] gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1] Length = 672 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A + GL I+ T TKRMA++L +YLY++ +H + ER + + + G +LV Sbjct: 440 ANENGLTIVFTE-TKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 498 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N + Sbjct: 499 ATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 542 >gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] Length = 1425 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++L+ ++L EG+D+ C LV D K+ LR S +Q GRA + + Sbjct: 472 IDDLRSGKKNLLIATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKASSK 526 Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708 VI YA DT TK A+++ + + Sbjct: 527 FVIFYAEDDTTTKKDWEAMEDIMKEK 552 >gi|78045611|ref|YP_361786.1| putative helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034041|emb|CAJ21686.1| putative helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 831 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDLRKPARIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|221128417|ref|XP_002167172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Hydra magnipapillata] Length = 599 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +L+ V +K+ A+ L + L ++ +++ MHS+ ER I+ + G FD+LV N+L Sbjct: 424 MLIFVESKKGADLLCDALTQKFSLKCESMHSDKTQSERTLIVNNFLTGSFDILVSTNILG 483 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D+P V + D F S + +GRA + Sbjct: 484 RGIDLPNVRQVLLFD-----FPNSIEEYVHQVGRAGQ 515 >gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii] gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii] Length = 567 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A G RI++ TKRM + L+ Y R R +H + K ER +++ + G+ +LV Sbjct: 369 AKPPGTRIIIFCTTKRMCDQLS-YQMGREFRSAAIHGDKKQSERDYVLQAFKDGRTPILV 427 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLDIP V D F I IGR R Sbjct: 428 ATDVAARGLDIPNVAAVVNFD-----FPTGTEDYIHRIGRTGR 465 >gi|313115462|ref|ZP_07800929.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii KLE1255] gi|310622229|gb|EFQ05717.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii KLE1255] Length = 686 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 6/104 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 ED+ + L RV MH ++K E+ ++ D + G+ D LV ++ G+D+P ++ Sbjct: 497 EDIAKALLPER-RVGLMHGKLKPKEKAAVMEDFKAGRLDALVSTTVIEVGVDVPNASVMV 555 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698 I +A++ G ++L Q GR R S L +D ++++Q Sbjct: 556 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNQSENVQ 595 >gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1] Length = 657 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER E +R R G+ DVLVG ++ + Sbjct: 462 VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVLVGTDVASK 521 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLD P V D KE + + IGR R + V Sbjct: 522 GLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGV 558 >gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1] gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1] Length = 1210 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A L + ++ P +V F S+ + E PR+DT + + S+ ++ S T Sbjct: 77 AEDLTAALASYLPAESVATFPSW-ETLPHERLSPRSDT-VGRRLSVLRRLTHPETSTTAP 134 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 L + + G+G + + V L++G E++ +L Y R D+ Sbjct: 135 LRVVVAPVRAVVQPIVAGLGDL-----VPVTLQVGQERSFTEVVRALSDAAYARVDMVTH 189 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 RG F V G +++FP ED RV FG++++++ F Sbjct: 190 RGEFAVRGGILDVFPP-TEDHPIRVEFFGDEVDQMRWF 226 >gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 453 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+M ++L +YL ++ ++V +H + ER +R++R G++ +V +L G+D+P Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 313 VSLVINYEIPKD-----LEFIIHRIGRTGRN 338 >gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS9429] gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS2096] gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS9429] gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS2096] Length = 1167 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E I I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|159043541|ref|YP_001532335.1| type III restriction protein res subunit [Dinoroseobacter shibae DFL 12] gi|157911301|gb|ABV92734.1| type III restriction protein res subunit [Dinoroseobacter shibae DFL 12] Length = 938 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R A+ + EY + +HS + R + L G+ D+L +++ EG+D+PE G Sbjct: 483 RHADYMAEYFRTAGLNAIAVHSGQSSAPRASSLAALGRGEIDILFAVDMFNEGVDVPEIG 542 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 V +L + + +Q +GR R V KV+ D I Sbjct: 543 TVLMLRPTESAII-----WLQQLGRGLRRVEGKVLQVIDYI 578 >gi|77461253|ref|YP_350760.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77385256|gb|ABA76769.1| ATP dependent helicase, Lhr family [Pseudomonas fluorescens Pf0-1] Length = 1431 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 12/172 (6%) Query: 550 RPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607 R G+ PPV + + A E VYD + A++ L+ V T+R+AE L+ +L ER Sbjct: 243 RDLGIEVPPVPLSAVMANDVWELVYDRLATLAREHRTTLIFVNTRRLAERLSRHLSERLG 302 Query: 608 R--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + V H + R++ + L+ G+ VL+ L G+DI E LV + + Sbjct: 303 KQAVAAHHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGEVDLVCQIASP----- 357 Query: 666 RSKTSLIQTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRREKQLEH 714 RS +Q +GR+ V K L+A T I+ A+ + RR E H Sbjct: 358 RSIAGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLH 409 >gi|47218845|emb|CAG02830.1| unnamed protein product [Tetraodon nigroviridis] Length = 730 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 18/91 (19%) Query: 610 RYMHSEVKTLERI------------EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 RY + ++ LER+ + IR R G+ ++L+ ++ EGLDIPEC LV Sbjct: 392 RYENPKMSQLERVLLNQFGPDPEQKDTIRSFRQGRLNLLISTSVAEEGLDIPECNLVV-- 449 Query: 658 DADKEGFLRSKTSLIQTIGRA-ARNVNSKVI 687 + G L ++ + IQ GRA ARN V+ Sbjct: 450 ---RYGLLTNEIAQIQASGRARARNSQYSVV 477 >gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 453 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+M ++L +YL ++ ++V +H + ER +R++R G++ +V +L G+D+P Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 313 VSLVINYEIPKD-----LEFIIHRIGRTGRN 338 >gi|328353170|emb|CCA39568.1| eukaryotic initiation factor 4A [Pichia pastoris CBS 7435] Length = 486 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD I++ + ++ T+R E+LTE L + V +HSE+ ER I+++ R Sbjct: 337 DLYDSISVT-----QAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFR 391 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G +L+ +LL G+D+ + LV D ++KE ++ Sbjct: 392 TGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 429 >gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480] gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480] Length = 1437 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 9/87 (10%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DL+ GK ++LV ++L EG+D+ C LV D K+ LR S +Q GR AR NS Sbjct: 483 INDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGR-ARKANS 536 Query: 685 KVILYA---DTITKSIQLAIDETTRRR 708 K +++ DT TK A+++ + R Sbjct: 537 KYVIFHAEDDTSTKKDWEAMEDIMKER 563 >gi|2996312|gb|AAC13192.1| unknown [Yersinia pestis KIM 10] Length = 492 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E + GL + V KR + L E + E ++V +++ E R + L Sbjct: 328 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 387 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA--ARNVNSKV 686 G+ DVL+G +L G+D+P G V + K ++ + Q +GR A+ + V Sbjct: 388 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 442 Query: 687 ILYADTITKSIQLAIDETTRRR 708 D I S + + + R+ Sbjct: 443 CFITDFIDVSNKYLMSHSYERK 464 >gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC 51100] gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC 51100] Length = 524 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R S + I + L I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLLIIENLTKKRM 362 Query: 710 KQLE 713 K L+ Sbjct: 363 KGLK 366 >gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis] Length = 990 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I+++V KRMA+ ++ +L + + +H + ER + +RD R G +LV N+ Sbjct: 774 KIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKALRDFRSGVSPILVATNVAA 833 Query: 644 EGLDIPE 650 GLDIPE Sbjct: 834 RGLDIPE 840 >gi|212223539|ref|YP_002306775.1| Hypothetical DNA/RNA repair helicase [Thermococcus onnurineus NA1] gi|212008496|gb|ACJ15878.1| Hypothetical DNA/RNA repair helicase [Thermococcus onnurineus NA1] Length = 458 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 34/185 (18%) Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568 W +R I + A G E + E +IR L P EI + + + Sbjct: 234 WRRIRGEEIKIEAVVGPTIFE----VRAEDLIREGFLAKPRFEIVTYESSMPSFSERYKE 289 Query: 569 --EDVY---DEINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 ED+ DE N A A++G R+L+ V + L L + ++ ++ S Sbjct: 290 LYEDMIMNNDERNRAIIRKAIELARRGHRVLIDVRRIEHGKILKGMLEKEGVKAEFLSS- 348 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 K+ R EI+ D + G+ VLV LL+EG+DIPE + + K S IQTI Sbjct: 349 -KSPNRWEILEDFKEGRIPVLVS-TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTI 401 Query: 676 GRAAR 680 GRA R Sbjct: 402 GRALR 406 >gi|21231754|ref|NP_637671.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768120|ref|YP_242882.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|21113460|gb|AAM41595.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573452|gb|AAY48862.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] Length = 1464 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY E+ AQQ L+ V T+RMAE +L E RV H Sbjct: 252 PLSVVLSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ R L+ G+ VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366 Query: 676 GRAARNVNS--KVILYADTITKSIQLA 700 GR+ V K L+ T + ++ A Sbjct: 367 GRSGHAVGGTPKARLFPQTRDELVECA 393 >gi|332363341|gb|EGJ41126.1| DNA helicase RecG [Streptococcus sanguinis SK49] Length = 671 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 6/101 (5%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +LT Y + +V +H ++K+ E+ I++D + G+ D+LV ++ G+++P ++ I Sbjct: 487 ELTAY-FGHQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATVMVI 545 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 +DAD+ G + L Q GR R S +L A+ T+S Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582 >gi|221093989|ref|XP_002170248.1| PREDICTED: similar to LOC562123 protein [Hydra magnipapillata] Length = 755 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +L+ V +K+ A+ L + L ++ +++ MHS+ ER I+ + G FD+LV N+L Sbjct: 441 MLIFVESKKGADLLCDALTQKFSLKCESMHSDKTQSERTLIVNNFLTGSFDILVSTNILG 500 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D+P V + D F S + +GRA + Sbjct: 501 RGIDLPNVRQVLLFD-----FPNSIEEYVHQVGRAGQ 532 >gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus] Length = 411 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ +TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1104 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 24/195 (12%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G+ G+ + +A + RP +V+ P+K +A + ++ + V +F P Sbjct: 31 GLAGASLSAVVANLYTHTHRPLLVLLPDKEESAYVLNDLETLVGEQRVLFF--------P 82 Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288 ++Y R IE + N E + ++ HS T+ L IVVS ++ + + + Sbjct: 83 DSY--RRPYQIEDTDNANVLLRAEVLHQLSHS-TKPL------IVVSYPEALFEKVITRK 133 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 Q +++ GDS+ + L L Q+ R D G F V G ++IF S + + Sbjct: 134 QLEQNTLKITKGDSLTLEFLNEVLFSYQFNRTDFVTEPGEFSVRGGIVDIF-SFSNNEPY 192 Query: 349 RVSMFGNDIEEISEF 363 R+ FGN++E I F Sbjct: 193 RIEFFGNEVESIRTF 207 >gi|298345580|ref|YP_003718267.1| putative transcription-repair coupling factor [Mobiluncus curtisii ATCC 43063] gi|298235641|gb|ADI66773.1| possible transcription-repair coupling factor [Mobiluncus curtisii ATCC 43063] Length = 1165 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 14/172 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+AP+ A QL E + VE F + + E PRTDT + +++ Sbjct: 47 ERLTVVLAPSTRAATQLARELGAY--TAGVELFPDW-ETLPHERLSPRTDTMARRIWALH 103 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 R+ H + ++ V ++++ + + Y VQ +GD+ ++ + ++L Sbjct: 104 ----RVTHPHPQDAVQFLVMPVRAALAPVNA--HIADYPLFTVQ--VGDTYDRDTMAANL 155 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363 ++ Y+R D+ RG F V G +++F P+ V R+ +FG++++ I F Sbjct: 156 LRLGYERVDMVGARGQFAVRGGLLDVFSPTSAHPV--RIELFGDEVDTIRAF 205 >gi|315221232|ref|ZP_07863155.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211] gi|315189591|gb|EFU23283.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211] Length = 690 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H ++K+ E+ I++D + GK D+LV ++ G+++P ++ I+DAD+ G Sbjct: 517 VALLHGKMKSDEKDAIMQDFKEGKTDILVSTTVIEVGVNVPNATVMLIMDADRFGL---- 572 Query: 669 TSLIQTIGRAAR-NVNSKVILYADTITKS 696 + L Q GR R N S +L A+ T+S Sbjct: 573 SQLHQLRGRVGRGNKQSYAVLVANPKTES 601 >gi|321472714|gb|EFX83683.1| hypothetical protein DAPPUDRAFT_230663 [Daphnia pulex] Length = 429 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE ++ER+ V MH E++ ER I+R+ R Sbjct: 288 DLYDTLSIT-----QAVIFCNTRRKVDWLTEKMHERDFTVSAMHGEMEQKERDVIMREFR 342 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + LV Sbjct: 343 SGSSRVLITTDLLARGIDVQQVSLV 367 >gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis CD36] gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis CD36] Length = 667 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A + GL I+ T TKRMA++L +YLY++ +H + ER + + + G +LV Sbjct: 441 ANENGLTIVFTE-TKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 499 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N + Sbjct: 500 ATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 543 >gi|310792073|gb|EFQ27600.1| hypothetical protein GLRG_02744 [Glomerella graminicola M1.001] Length = 538 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT+ + R++ + +ER EI+ R G+F VLV + EG DIP V + Sbjct: 176 LTQAFRKHGYDARFVTGDTPKVERSEILEAFRKGEFPVLVNCGVFTEGTDIPNIDCVVLA 235 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 RS+ L+Q IGR R K + + S++ I Sbjct: 236 RP-----TRSRNLLVQMIGRGMRLHKGKTDCHVIDMVSSLETGI 274 >gi|166714796|gb|ABY88110.1| UvrB [Stenotrophomonas sp. LMG 10857] Length = 60 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 +++FP+ + A R+ +F ++E+IS F PLTG+ +R + IY +HY T R Sbjct: 2 VDVFPAESDSEAVRIELFEGEVEQISMFDPLTGESLRKMMRYTIYPRTHYATTR 55 >gi|242019168|ref|XP_002430037.1| dicer-1, putative [Pediculus humanus corporis] gi|212515099|gb|EEB17299.1| dicer-1, putative [Pediculus humanus corporis] Length = 701 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 9/104 (8%) Query: 611 YMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 YM+++ + R EI++ + G+ +++ N+L EG+D+P C LV D F + Sbjct: 379 YMNNDFVDISRKKNEIMKRMASGELNLIFATNILEEGIDLPACNLVISFD-----FPKGY 433 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 +S IQ+ GR ARN NS +++D K + IDE R EK L Sbjct: 434 SSYIQSRGR-ARNENSIYYIFSDENEKKNEKLIDE-YRDFEKTL 475 >gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans PV-1] gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans PV-1] Length = 628 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK +++ E L R ++ +VK +R +I+ L+ GK D++V ++ Sbjct: 247 MIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAAR 306 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R ++ IL+ K + +I+ Sbjct: 307 GLDVERISHVINYDIPHDTESYVHR----IGRTGRAGRKGDA--ILFVAPREKRMLYSIE 360 Query: 703 ETTRRREKQLEHNKKHNIN 721 + T +R +QLE +IN Sbjct: 361 KATNQRVEQLEMPTTEDIN 379 >gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49] gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49] gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG] Length = 657 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER E +R R G+ DVLVG ++ + Sbjct: 462 VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVLVGTDVASK 521 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLD P V D KE + + IGR R + V Sbjct: 522 GLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGV 558 >gi|153006830|ref|YP_001381155.1| type III restriction protein res subunit [Anaeromyxobacter sp. Fw109-5] gi|152030403|gb|ABS28171.1| type III restriction protein res subunit [Anaeromyxobacter sp. Fw109-5] Length = 1348 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 G R L+ + E + ++L R +RV +HS+ + +R E +R L G+ D + + Sbjct: 513 HSGTRSLVFCASIAHVEYVQQWLAARGVRVVAVHSQPGSADREEALRKLAAGELDAVCAV 572 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 +L EG+D+P V +L + S +Q +GR R K Sbjct: 573 DLFNEGVDVPLVDRVVMLRPTE-----SPVVFLQQLGRGLRVAEGK 613 >gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis MA-4680] gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces avermitilis MA-4680] Length = 1176 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + FT+A + R + + A L + ++ P + V + S+ + E Sbjct: 38 AARPFTVAALARDTGRTVLAVTATGREAEDLAAALRSLLPPDRVVEYPSW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ + + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLAHPRADDPETGPVSVVVAPIRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G + + ++ +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 149 -VALRTGQTADLGTIVEALSAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+] gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+] Length = 652 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 +VDP R ++ ++ E + + RIL+ L K+ A + ++L R IRV +H Sbjct: 465 VVDP----RGKEQRLLELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERRGIRVASIH 520 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 +++ +R + + + G VLV ++ GLDIPE LV Sbjct: 521 GDLRQDQRTKSLEAFKAGTTSVLVATDVAARGLDIPEVKLV 561 >gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS10750] gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes MGAS10750] Length = 1167 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E I I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222 >gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis L2-32] gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis L2-32] Length = 1188 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 32/164 (19%) Query: 221 AVEYFVSYYD-----YYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLL 267 AVE S+YD Q EA+ PR DT + + R++H S L Sbjct: 87 AVESIRSWYDGDPNDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPEEGSTL 142 Query: 268 ERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 I+V V + G+G VE +SQ G+ + E LV+ Y R Sbjct: 143 FGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQ-------GEELPLDEASRKLVENAYTRV 195 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 D+ + RG F V G I++FP L R+ FG++I+ I EF+ Sbjct: 196 DLVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTIREFH 238 >gi|289667121|ref|ZP_06488196.1| putative helicase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 831 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILRSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI LV + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDLVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2] gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2] Length = 448 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK ++LT+YL E+ ++V +H ++ ER ++R ++ ++ +V +L G+DI Sbjct: 251 TKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIEG 310 Query: 651 CGLV--AILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTR 706 V A + AD + F I +GR RN + + LY + ++IQ D + Sbjct: 311 VSHVINAEIPADLDFF-------IHRVGRTGRNQLAGTAITLYDPSDEQAIQAIEDLGVK 363 Query: 707 RREKQLEHNK---KHNINPQSVKEKIMEVIDPILL 738 + K++++ + ++ N + +EK + +DP L+ Sbjct: 364 FQPKEIKNGEIVATYDRNRRQKREKSRDELDPTLI 398 >gi|242398609|ref|YP_002994033.1| Predicted DNA/RNA repair helicase [Thermococcus sibiricus MM 739] gi|242265002|gb|ACS89684.1| Predicted DNA/RNA repair helicase [Thermococcus sibiricus MM 739] Length = 456 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 8/102 (7%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A+QG R+L+ V L E ++ I+ ++ S+ + R EI + G+ +VL+ Sbjct: 315 AKQGHRVLIDVKRIEHGNVLIEMFKKKGIKAEFLSSQ--SPNRWEIFEKFKNGEINVLIS 372 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LL+EG+DIPE + + K S IQTIGRA R Sbjct: 373 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 408 >gi|196012648|ref|XP_002116186.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190581141|gb|EDV21219.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 220 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V T+R E LT+ L+ER+ V MH ++ ER I+R+ R G VL+ +LL G Sbjct: 90 VIFVNTRRKVEWLTQRLHERDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 149 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +D+ + LV D ++ + I IGR+ R Sbjct: 150 IDVQQVSLVINYDIPT-----NRENYIHRIGRSGR 179 >gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG] gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF] Length = 1178 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 D PA +A+ +K + Q + + + F +A + +R + + A L + Sbjct: 12 DDPA-LAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 70 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + P V F S+ + E PR+DT + + + R+ H Sbjct: 71 ALRTLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 125 Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 +VV+ + + G+G +E V L+ G SV+ +E++ +L Y R ++ R Sbjct: 126 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGQSVDLQEIVEALAAAAYARVELVEKR 180 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G F V G +++FP E+ RV +G+++EE+ F K+ + +++I + + Sbjct: 181 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYF------KVADQRSLEIAEHGLWA 233 Query: 387 TP 388 P Sbjct: 234 PP 235 >gi|222153644|ref|YP_002562821.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] gi|222114457|emb|CAR43286.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 671 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++L Y E+ R+ MH ++K E+ I++ + G+ D+LV ++ G+++P + Sbjct: 484 LEQELKAYFKEKA-RIALMHGKMKNEEKDTIMQTFKKGQIDILVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S IL A+ T++ Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGHKQSYAILVANPKTET 582 >gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL B-30929] gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL B-30929] Length = 1178 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ GV GS +T + +I + +P +V+ + A QL ++ N + + F Sbjct: 26 QLVTGVGGSARTLLIDNLIHSTDKPTVVVVDSLFHADQLVNDLSNLIDDDQLFEF----- 80 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P + + ++ + + R A L + ++V+SVS I + + Sbjct: 81 --------PVEEMGAAELATSSPEYKAQRVLALDKLASGDPAVIVTSVSGIRRLVPEKKQ 132 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + L++ + + ++L L + Y Q + G F + G ++IFP + +D R Sbjct: 133 FQAAKLTLEMDGTYDLEQLKLQLHQMGYVFQKMVAAPGDFSIRGSILDIFPLNHQDPV-R 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F D++ + F + I+N+++I + Sbjct: 192 IDFFDTDVDSMRTFDVSNQRSIKNIKSITV 221 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y+H ++ + +I+ D G++DVLV ++ G+DIP + + +AD+ G Sbjct: 856 RVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGL--- 912 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 913 -SQLYQLRGRIGRS 925 >gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica] Length = 497 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 QG R L+ V TK A+ L L I+ +H + + +R + I DL+ + VLV + Sbjct: 317 QGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRMHVLVATD 376 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + G+DI + +V D F + S I IGR AR Sbjct: 377 VAARGIDIDDVEVVINFD-----FPKELESYIHRIGRTAR 411 >gi|289662227|ref|ZP_06483808.1| putative helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 831 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I EQ+ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|320010606|gb|ADW05456.1| Protein of unknown function DUF3427 [Streptomyces flavogriseus ATCC 33331] Length = 1044 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ V D++ +R L ++ A + ++ + R + E ER + Sbjct: 543 ARLVVQAVIDKVTDPGS--MRALGFCVSVAHAHFMADFFQRSGLNARALSGETPRHERKK 600 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + +LR G+ V+ ++L EGLDIP+ + +L S T +Q +GR R Sbjct: 601 ALDELRSGQLQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 655 Query: 684 SKVIL 688 K +L Sbjct: 656 DKAVL 660 >gi|315426340|dbj|BAJ47980.1| helicase-associated endonuclease for fork-structured DNA [Candidatus Caldiarchaeum subterraneum] gi|315426365|dbj|BAJ48004.1| helicase-associated endonuclease for fork-structured DNA [Candidatus Caldiarchaeum subterraneum] Length = 694 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 14/117 (11%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKT------LERIEIIRDLRLGKFDV 635 RI++ + AE + L E R R E KT E+I ++++ R G F++ Sbjct: 365 RIMVFANIRNTAEVIVSRLTELGYRARMFIGKGEGKTGPKMTQQEQIRLLKEFREGVFNI 424 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691 LV ++ EGLDIPECG V + G IQ GR R + KV IL A+ Sbjct: 425 LVATSIGEEGLDIPECGYVIFYEPAISGI-----RYIQRRGRTGRKLPGKVTILIAE 476 >gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542] Length = 614 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+ AE++ L ER I + +V +R +I+ LR G DVLV ++ GLD+ Sbjct: 278 TRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVLVATDVAARGLDVDR 337 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLV D E + + IGR R + V L Sbjct: 338 IGLVVNFDIPGE-----PEAYVHRIGRTGRAGRTGVAL 370 >gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei] gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei] Length = 686 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR A +L +L + IR +H ++K +ER + R G+F +LV + Sbjct: 431 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 490 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP + +++ D G + IGR R N Sbjct: 491 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 524 >gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614] gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614] Length = 1224 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 28/214 (13%) Query: 166 SREKVQLLLGVTG--SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 +R V L +TG + + F +A ++ A + V A ++ A L + V Sbjct: 34 ARGGVVPALDLTGPEALRPFVVAGLVRAGRSVLAVTATSR-EAEDLVEALGDLLDPARVA 92 Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH--SATRSLLERNDC-------IV 274 Y+ S+ + E PR+DT + + + R+ H +AT + + + +V Sbjct: 93 YYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLCHPGAATDAATDSSAGTPNGPIDVV 147 Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329 V+ V + G+G +E V+L+ GD+ +++ L Y R D+ RG F Sbjct: 148 VAPVRSVLQPQVKGLGDLEP-----VELEPGDTAPLDDVVRRLAAAAYTRVDLVEKRGEF 202 Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 V G +++FP E+ RV ++G+D+EEI F Sbjct: 203 AVRGGIVDVFPP-TEEHPLRVELWGDDVEEIRSF 235 >gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78] gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78] Length = 1178 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 D PA +A+ +K + Q + + + F +A + +R + + A L + Sbjct: 12 DDPA-LAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 70 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + P V F S+ + E PR+DT + + + R+ H Sbjct: 71 ALRTLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 125 Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 +VV+ + + G+G +E V L+ G SV+ +E++ +L Y R ++ R Sbjct: 126 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGQSVDLQEIVEALAAAAYARVELVEKR 180 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G F V G +++FP E+ RV +G+++EE+ F K+ + +++I + + Sbjct: 181 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYF------KVADQRSLEIAEHGLWA 233 Query: 387 TP 388 P Sbjct: 234 PP 235 >gi|162417900|ref|YP_001604581.1| Type III restriction enzyme, res subunit [Yersinia pestis Angola] gi|162350872|gb|ABX84821.1| Type III restriction enzyme, res subunit [Yersinia pestis Angola] Length = 519 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E + GL + V KR + L E + E ++V +++ E R + L Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461 >gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis] Length = 518 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RIL+ V TKR A+ L YL ++ + +H + +R + + +L + +LV ++ Sbjct: 391 RILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFKLNRVQILVATDVAA 450 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDIP+ LV D + + + IGR R N+ V + Sbjct: 451 RGLDIPDVSLVINYDTPQ-----NIEDYVHRIGRTGRAGNTGVAI 490 >gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA] gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA] Length = 1167 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 19/237 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLL+G++GS K +A ++ Q+ +VM A +L S+ + V Y+ Sbjct: 30 QLLMGLSGSTKALAIASALDEHQK-ILVMTSGYSEAEKLSSDLISLLGEEKV------YN 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSCI-YGIGSVE 288 + +A P + + I +I A LL+ N+ I+V+++S + + Sbjct: 83 FLADDA--PMAEFIFSSQEKIYTRI-----GALNFLLDDNESGILVTNLSASRLFLPNPN 135 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA- 347 I++LK+G L++ L+K Y+++ +G F + GD ++IF + ++ Sbjct: 136 ELKSSIIELKVGQEYNLDTLVNFLIKIGYRKESQVFNQGEFSLRGDILDIFDK--DSISP 193 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 +R+ FG++I+ I F + I N+ + I+ + + A K I+E +K Sbjct: 194 YRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLSDEDYLRAQKKIEEAVK 250 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%) Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 + +++AE L E + E NI Y+H ++ + + D G++DVLV ++ G+DIP Sbjct: 837 IEQKVAE-LKELIPEANIG--YVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIP 893 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 + I +AD G ++L Q GR R S I YA Sbjct: 894 NANTLFIENADHMGL----STLYQLRGRVGR---SNRIAYA 927 >gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC 14672] gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC 14672] gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC 14672] Length = 1185 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 22/238 (9%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ + ++ + L + + F +A + RP + + A L + ++ Sbjct: 15 ALAEAISAASDGHRMHVDLVGPPAARPFAVAALARETGRPVLAVTATGREAEDLAAALRS 74 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P V + S+ + E PR+DT + + + R+ H +VV Sbjct: 75 LLPPEGVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRLDDPETGPVSVVV 129 Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + V + G+G +E V L+ G S + +E++ +L Y R ++ RG F Sbjct: 130 APVRSVLQPQVKGLGDLEP-----VSLRTGQSADLEEVVEALAAAAYARVELVEKRGEFA 184 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ R+ +G+D+EEI F K+ + ++++ + + P Sbjct: 185 VRGGILDVFPP-TEEHPLRIEFWGDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|322705100|gb|EFY96688.1| ATP-dependent RNA helicase dbp3 [Metarhizium anisopliae ARSEF 23] Length = 596 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 Q+ RIL+ L K+ A + +L + IRV +H ++K +R + + G+ VLV Sbjct: 430 QKNDRILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVAT 489 Query: 640 NLLREGLDIPECGLV 654 ++ GLDIPE LV Sbjct: 490 DVAARGLDIPEVKLV 504 >gi|71066639|ref|YP_265366.1| ATP-dependent DNA helicase RecG [Psychrobacter arcticus 273-4] gi|71039624|gb|AAZ19932.1| probable DNA helicase [Psychrobacter arcticus 273-4] Length = 808 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 7/112 (6%) Query: 588 TVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 +VL + AE E L ER +IR+ +H ++K ++ I++ + G+ D+L+ ++ G+ Sbjct: 611 SVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLIATTVIEVGV 670 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696 D+P L+ I +A++ G + L Q GR R V+LY ++++ Sbjct: 671 DVPNASLMVIENAERLGL----SQLHQLRGRVGRGSTKSYCVLLYQKPLSET 718 >gi|93007226|ref|YP_581663.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5] gi|92394904|gb|ABE76179.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5] Length = 782 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 7/112 (6%) Query: 588 TVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 +VL + AE E L ER +IR+ +H ++K ++ I++ + G+ D+L+ ++ G+ Sbjct: 585 SVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLIATTVIEVGV 644 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696 D+P L+ I +A++ G + L Q GR R V+LY ++++ Sbjct: 645 DVPNASLMVIENAERLGL----SQLHQLRGRVGRGSTKSYCVLLYQKPLSET 692 >gi|73662868|ref|YP_301649.1| primosomal protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495383|dbj|BAE18704.1| primosomal protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 802 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 23/232 (9%) Query: 3 KKTRSFPKKDSRI--QSISTRVDDLDYFSFEEKQLEVDKTMVADAMRR-IRSEAGKHRKN 59 K T+ F +D+ ++++ + D +++F+ Q D T +A +++ I SE +N Sbjct: 112 KYTKVFSIEDTNALPETLAGKFDSSGHYAFKAAQQNDDLTQIAPLLKQGIVSEVTLLSQN 171 Query: 60 AAKRMLIHQRENTASKGEFQSQSSISMSEKQTRE-------ISEQ---TMTPSVQALARL 109 K+ QR +G F S ++ EK ++ + EQ + ++A+ Sbjct: 172 VNKK---KQRAICVVEG-FNYDSVLNSLEKSKKQYELYAFLLDEQHRIVLLKDIEAMGYS 227 Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169 S + L++ G + + + F+ H + DQ A + + IH+ E+ Sbjct: 228 KSSVDTLIRKG--FVEKYDAVVERDPFETRVFEQDVKQHLTSDQQRAFEAISEKIHAHEQ 285 Query: 170 VQLLL-GVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFF 217 LL GVTGSGKT + IE + R A+++ P L Q+ FK F Sbjct: 286 CTYLLHGVTGSGKTEVYLQTIEEVLNLNRQAMMLVPEIALTPQMVLRFKRRF 337 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 15/102 (14%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646 T+R+ E L E E R + +V T R +++ D GK D+L+G ++ +GL Sbjct: 562 TQRVEELLQEAFQE----ARIIRMDVDTTSRKGAHEKLLNDFGSGKGDILLGTQMIAKGL 617 Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681 D P LV +L+AD L R+ L Q GRA R+ Sbjct: 618 DFPNITLVGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRH 659 >gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21] gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21] Length = 1093 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 22/209 (10%) Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILAAQLYSEFKN 215 +GI + +K L VTG + A + A+Q P I++ P + L E Sbjct: 17 EGIQAWQKASGPLTVTGLSGSIK-AGFLCALQTFGKASDPLIILTPRREDVRLLRRELTP 75 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV- 274 F+P A+ E Y P + E ++ NE++ R +A +L++ I+ Sbjct: 76 FYPDQAMR-----------ELY-PLGLIHGEIDTR-NEEVMAERAAALEMILKKEAAIIF 122 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 V++ + I + + + + L GD + +L+ LVK+ Y+R D G F V GD Sbjct: 123 VTAEAAIQKLPRPDGLLRDSITLTHGDEKNRDKLIERLVKEGYERTDQVETLGQFSVRGD 182 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 ++IFP + +D R+ F I+ I F Sbjct: 183 ILDIFPINAKDPV-RIEWFDETIDAIRRF 210 >gi|159468652|ref|XP_001692488.1| predicted protein [Chlamydomonas reinhardtii] gi|158278201|gb|EDP03966.1| predicted protein [Chlamydomonas reinhardtii] Length = 599 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 598 LTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +T+Y L RN+ V +H + LER I+ R G F LV +L GLD+P+C Sbjct: 495 VTKYKLEARNMEVSVLHGRLSRLERSNIVAAFRAGTFRALVATDLAARGLDLPDC 549 >gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311] gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311] Length = 528 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ IIRD + G+ D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus] Length = 411 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ +TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 370 >gi|16082814|ref|NP_395368.1| hypothetical protein YPMT1.30 [Yersinia pestis CO92] gi|31795353|ref|NP_857805.1| hypothetical protein Y1022 [Yersinia pestis KIM] gi|40787954|ref|NP_857667.2| hypothetical protein YPKMT029 [Yersinia pestis KIM] gi|45478621|ref|NP_995477.1| hypothetical protein YP_pMT033 [Yersinia pestis biovar Microtus str. 91001] gi|108793565|ref|YP_636715.1| hypothetical protein YPA_MT0033 [Yersinia pestis Antiqua] gi|108793765|ref|YP_636603.1| hypothetical protein YPN_MT0033 [Yersinia pestis Nepal516] gi|145597224|ref|YP_001154687.1| hypothetical protein YPDSF_4060 [Yersinia pestis Pestoides F] gi|149192767|ref|YP_001293998.1| hypothetical protein YPE_4284 [Yersinia pestis CA88-4125] gi|165939465|ref|ZP_02228012.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166012067|ref|ZP_02232965.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166214439|ref|ZP_02240474.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167402354|ref|ZP_02307819.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422776|ref|ZP_02314529.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427120|ref|ZP_02318873.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466691|ref|ZP_02331395.1| hypothetical protein YpesF_02105 [Yersinia pestis FV-1] gi|229896960|ref|ZP_04512119.1| putative helicase [Yersinia pestis Pestoides A] gi|229897748|ref|ZP_04512903.1| putative helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900301|ref|ZP_04515436.1| putative helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229904825|ref|ZP_04519935.1| putative helicase [Yersinia pestis Nepal516] gi|270491012|ref|ZP_06208085.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27] gi|294502021|ref|YP_003565758.1| hypothetical protein YPZ3_pMT0029 [Yersinia pestis Z176003] gi|3883023|gb|AAC82683.1| unknown [Yersinia pestis KIM 10] gi|5834715|emb|CAB55212.1| hypothetical protein YPMT1.30 [Yersinia pestis CO92] gi|45357274|gb|AAS58668.1| hypothetical protein YP_pMT033 [Yersinia pestis biovar Microtus str. 91001] gi|108777829|gb|ABG20347.1| hypothetical protein YPN_MT0033 [Yersinia pestis Nepal516] gi|108782112|gb|ABG16169.1| hypothetical protein YPA_MT0033 [Yersinia pestis Antiqua] gi|145212992|gb|ABP42397.1| hypothetical protein YPDSF_4060 [Yersinia pestis Pestoides F] gi|148872425|gb|ABR14914.1| hypothetical protein YPMT1.30 [Yersinia pestis CA88-4125] gi|165912653|gb|EDR31283.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165989001|gb|EDR41302.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166204387|gb|EDR48867.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958269|gb|EDR55290.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048246|gb|EDR59654.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053871|gb|EDR63703.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678140|gb|EEO74246.1| putative helicase [Yersinia pestis Nepal516] gi|229686660|gb|EEO78741.1| putative helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229693329|gb|EEO83379.1| putative helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229699996|gb|EEO88036.1| putative helicase [Yersinia pestis Pestoides A] gi|262363915|gb|ACY60634.1| hypothetical protein YPD4_pMT0029 [Yersinia pestis D106004] gi|262364072|gb|ACY64408.1| hypothetical protein YPD8_pMT0030 [Yersinia pestis D182038] gi|270334993|gb|EFA45771.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27] gi|294352492|gb|ADE66548.1| hypothetical protein YPZ3_pMT0029 [Yersinia pestis Z176003] gi|320017555|gb|ADW01125.1| putative helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 519 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E + GL + V KR + L E + E ++V +++ E R + L Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461 >gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066] gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066] Length = 528 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ IIRD + G+ D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|309797392|ref|ZP_07691785.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] gi|308119016|gb|EFO56278.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] Length = 519 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E L Q L + V KR + L E + E ++V +++ E R + L Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLNSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLR 461 >gi|25396065|pir||A88708 protein C01B10.1 [imported] - Caenorhabditis elegans Length = 956 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 31/148 (20%) Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMH--------------SEVKTLERIEI 624 R ++ V TK+ A+ L + L+E I+ +M S+ K +E++++ Sbjct: 620 FRAIIFVRTKKEADFLNYVLNDRLHELGIKSDWMSGQKKSTASSADISASKQKQMEKLKM 679 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 D G+ +LV ++ EGLDIPEC LV K + ++T+ +Q GR AR NS Sbjct: 680 FAD---GENQILVSTSVAEEGLDIPECSLVI-----KYNYATNETAHVQRRGR-ARARNS 730 Query: 685 KVILYADTITKSIQLAIDETTRRREKQL 712 K +L IT SI L + E+ ++ L Sbjct: 731 KCVL----ITNSIALHVQESNNLAKENL 754 >gi|52788081|ref|YP_093909.1| hypothetical protein pG8786_029 [Yersinia pestis] gi|52538010|emb|CAG27435.1| hypothetical protein [Yersinia pestis] Length = 519 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E + GL + V KR + L E + E ++V +++ E R + L Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461 >gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae] Length = 638 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR A +L +L + IR +H ++K +ER + R G+F +LV + Sbjct: 386 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 445 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP V D + + IGR R N Sbjct: 446 GLDIPNVRHVVNYDLPGD-----SDEYVHRIGRTGRCGN 479 >gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis] Length = 970 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD I ++ + ++ T+ E L E + E N V +H E+ +R E++R R Sbjct: 281 DLYDSITIS-----QAVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKFR 335 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G + VL+ ++ GLDIP LV D ++E +L IGR+ R Sbjct: 336 DGIYRVLISTDVWSRGLDIPGVSLVINYDVPTNREAYL-------HRIGRSGR 381 >gi|152991099|ref|YP_001356821.1| ATP-dependent DNA helicase RecG [Nitratiruptor sp. SB155-2] gi|151422960|dbj|BAF70464.1| ATP-dependent DNA recombinase RecG [Nitratiruptor sp. SB155-2] Length = 597 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%) Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAI----AQLLKGIHSREKVQLLLGVTGSGKTFTM 185 SI +++D F + P+ DQ AI L KG+ +R ++++G GSGK+ M Sbjct: 201 SIAQYAQDPEPFLSTLPFDPTSDQKRAIYDIYEDLKKGVAAR---RVIVGDVGSGKSLVM 257 Query: 186 -AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 A I+MAP ILA QLY E K F P+ Sbjct: 258 FATAFMNYPNKTILMAPTTILADQLYHEAKKFLPN 292 >gi|302391430|ref|YP_003827250.1| type III restriction protein res subunit [Acetohalobium arabaticum DSM 5501] gi|302203507|gb|ADL12185.1| type III restriction protein res subunit [Acetohalobium arabaticum DSM 5501] Length = 735 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 18/120 (15%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT----LERIEIIRDLRLG 631 NLA Q+ L ++ R + EY E NIR +HS +ER E + L G Sbjct: 353 NLAGQRTLGFCASINHARY---MAEYFNENNIRAVCVHSSSDQREYFMERKEAVEKLEAG 409 Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSKVIL 688 DV+ +++ EG+DIP V FLR S +Q +GR R K L Sbjct: 410 DIDVIFAVDIFNEGVDIPALDTVL--------FLRPTESYVVFLQQLGRGLREYKEKEYL 461 >gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata] Length = 395 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + YL + + +H + + ER + + D R GK V+V ++ Sbjct: 214 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 273 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D KE + IGR R N+ Sbjct: 274 RGLDIPDVQHVVNFDLPKE-----IDEYVHRIGRTGRCGNT 309 >gi|300811569|ref|ZP_07092053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497429|gb|EFK32467.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 453 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+M ++L +YL ++ ++V +H + ER +R++R G++ +V +L G+D+P Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + K+ +I IGR RN Sbjct: 313 VNLVINYEIPKD-----LEFIIHRIGRTGRN 338 >gi|326776076|ref|ZP_08235341.1| type III restriction protein res subunit [Streptomyces cf. griseus XylebKG-1] gi|326656409|gb|EGE41255.1| type III restriction protein res subunit [Streptomyces cf. griseus XylebKG-1] Length = 551 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 13/184 (7%) Query: 584 RILLTVLTKRMAEDLTEYLYERN---IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 R ++ T AE + E L + + Y+HS + R ++ + RLG+ V+ ++ Sbjct: 372 RAIVFCQTIEHAEHMAELLSVSDPQWVNASYLHSGLAKRHRNILLNEFRLGRVPVITCVD 431 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 + EG+D+P+ L+A L S+ +Q +GR R + N K + D +T + Sbjct: 432 VFNEGVDVPDVNLIAFLRVTH-----SRRIFVQQLGRGLRLSPNKKALKVLDFVTDIRRA 486 Query: 700 AIDETTRR--REKQLEHNK-KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756 A RR + EH + H + E + ++D + ++DAA + D +L Sbjct: 487 AAALNLRRTLEATEAEHLELPHTSRIEFQDETVGSLMD-MWIQDAADLETAADEVRLQFP 545 Query: 757 KKKG 760 KG Sbjct: 546 MPKG 549 >gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC 10712] Length = 1221 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 24/201 (11%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 RP + + A L + ++ P VEY ++ E PR+DT + + + Sbjct: 95 RPVLAVTATGREAEDLAAALRSLLDPDTVVEY--PSWETLPHERLSPRSDTVGRRLAVLR 152 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKE 307 R+ H +VV+ + + G+G +E V L+ G + + E Sbjct: 153 ----RLAHPRDDDPAAGPVSVVVAPIRSVLQPQVKGLGDLEP-----VALRSGQTADLNE 203 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 ++ L Y R ++ RG F V G +++FP E+ R+ +G+D+EEI F Sbjct: 204 IVEGLAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRIEFWGDDVEEIRYF---- 258 Query: 368 GQKIRNVETIKIYANSHYVTP 388 K+ + ++++ + + P Sbjct: 259 --KVADQRSLEVAEHGLWAPP 277 >gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16] Length = 692 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR A +L +L + IR +H ++K +ER + R G+F +LV + Sbjct: 440 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 499 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP V D + + IGR R N Sbjct: 500 GLDIPNVRHVVNYDLPGD-----SDEYVHRIGRTGRCGN 533 >gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL YB-4239] gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL YB-4239] Length = 664 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 + D +N A +GL I+ T TKRMA++L ++LY++ +H + ER + + + Sbjct: 423 ILDLLN-ANSEGLTIVFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKS 480 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 G+ +LV + GLDIP V D + + IGR R N + Sbjct: 481 GQAPILVATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 531 >gi|116200971|ref|XP_001226297.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51] gi|118575173|sp|Q2GUI4|DBP3_CHAGB RecName: Full=ATP-dependent RNA helicase DBP3 gi|88176888|gb|EAQ84356.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51] Length = 566 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592 GS EL+ I +EQ + +VDP R ++ ++ E + + RIL+ L K Sbjct: 412 GSTELQA--NIRIEQKVE---VVDP----RGKEQRLLELLKEAQKGSAKNDRILVFCLYK 462 Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 + A + + L R IRV +H +++ +R + + G VLV ++ GLDIPE Sbjct: 463 KEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVK 522 Query: 653 LV 654 LV Sbjct: 523 LV 524 >gi|325924438|ref|ZP_08185967.1| ATP dependent helicase, Lhr family [Xanthomonas gardneri ATCC 19865] gi|325545086|gb|EGD16411.1| ATP dependent helicase, Lhr family [Xanthomonas gardneri ATCC 19865] Length = 1485 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY E+ AQQ L+ V T+RMAE +L + RV H Sbjct: 253 PLSVVMSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVAAHHGS 312 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G+ VLV L GLDI + LV L G RS + +Q Sbjct: 313 LSRETRLLAEQRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 367 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GRA V K L+ T + ++ A+ ++ RR E Sbjct: 368 GRAGHAVGGTPKARLFPQTRDELVECAALLDSVRRGE 404 >gi|309810312|ref|ZP_07704150.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185] gi|308435740|gb|EFP59534.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185] Length = 729 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ MH + E+ +++R G+ DVLV ++ G+D+P ++ I+DAD+ G Sbjct: 544 GLRIGLMHGRLPAEEKDDVMRRFGAGEVDVLVATTVIEVGVDVPNASMIVIVDADRFGL- 602 Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688 + L Q GR R + + L Sbjct: 603 ---SQLHQLRGRVGRGEHGGLCL 622 >gi|209525471|ref|ZP_03274011.1| primosomal protein N' [Arthrospira maxima CS-328] gi|209494151|gb|EDZ94466.1| primosomal protein N' [Arthrospira maxima CS-328] Length = 875 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 16/145 (11%) Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+A++LT E R IR + K RI ++ + D+LVG +L +GLD+ Sbjct: 638 TQRVAQELTRLFPELRFIRFDSDTTRTKNAHRI-LLTQFANREADLLVGTQMLTKGLDLD 696 Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 GLV I+ AD G L R+ +L+Q GRA R N +VIL T + Sbjct: 697 SVGLVGIVSAD--GLLHLSDYRASERAFQTLLQVAGRAGRGNDPGQVILQTYTPEHPVVE 754 Query: 700 AIDETTRRR--EKQLEHNKKHNINP 722 A+ + E +L+H + N P Sbjct: 755 AVRNHAYQSFVETELQHRSELNYPP 779 >gi|260812834|ref|XP_002601125.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae] gi|229286416|gb|EEN57137.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae] Length = 370 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V TKR A+ L YL + +H + ER E + D R G+ VLV ++ Sbjct: 215 RVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVATSVAA 274 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692 GLDIP+ +V D S + IGR R N+ K I + D+ Sbjct: 275 RGLDIPKVMVVVNYD-----LPSSIDEYVHRIGRTGRVGNTGKAISFYDS 319 >gi|162329501|ref|YP_001604300.1| putative helicase [Acidianus filamentous virus 8] gi|157310618|emb|CAJ31696.1| putative helicase [Acidianus filamentous virus 8] Length = 564 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 V+ +R+ A L+E + I ++ S K ER+ I +L+ GK L+ +L EGL Sbjct: 433 VIVRRISTARKLSELFNKNGISSDFVTSMTKLEERMRKIENLKNGKIQTLIATSLADEGL 492 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 DIP L+ +L K S+ L+Q IGR R Sbjct: 493 DIPNLRLIVLLTQGK-----SRIKLVQRIGRVMR 521 >gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp. Tu6071] gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp. Tu6071] Length = 1181 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 D PA +A+ +K + Q + + + F +A + +R + + A L + Sbjct: 15 DDPA-LAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 73 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + P V F S+ + E PR+DT + + + R+ H Sbjct: 74 ALRTLIPTEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 128 Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 +VV+ + + G+G +E V L+ G SV+ +E++ +L Y R ++ R Sbjct: 129 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGQSVDLQEIVEALAAAAYARVELVEKR 183 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G F V G +++FP E+ RV +G+++EE+ F K+ + +++I + + Sbjct: 184 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYF------KVADQRSLEIAEHGLWA 236 Query: 387 TP 388 P Sbjct: 237 PP 238 >gi|326772340|ref|ZP_08231625.1| transcription-repair coupling factor [Actinomyces viscosus C505] gi|326638473|gb|EGE39374.1| transcription-repair coupling factor [Actinomyces viscosus C505] Length = 492 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 18/213 (8%) Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210 G +PA +A + G ++V +G A E P +V+ A + Sbjct: 85 GARPAVLAAMALGEEGVQRV--------AGGDAPAAGSAEVSGTPLLVVTATGREAEETA 136 Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 +++ P V ++ E PR DT ++ S + R L+ Sbjct: 137 LALRSYLPAEDVAVMPAWETLPH-ERLSPRADTVAQRLSVLRRLAHPEEGGVIRVLIVPV 195 Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 ++ I G+G +E VQL G +V E L Y R D+ RG + Sbjct: 196 RALLAP---VIAGLGELEP-----VQLAPGLTVGLDETARRLEAAAYTRVDMVESRGEYA 247 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 V G +++FP E RV FG++I+E+S F Sbjct: 248 VRGGILDVFPPS-EPRPVRVDFFGDEIDEVSSF 279 >gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces viridochromogenes DSM 40736] gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces viridochromogenes DSM 40736] Length = 1177 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + F +A + RP + + A L + ++ P V + S+ + E Sbjct: 38 AARPFAVAGLARDTGRPVLAVTATGREAEDLAAALRSLLPPEEVVEYPSW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ V + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G S + +E++ +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 149 -VSLRTGQSADLEEIVDALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|188991250|ref|YP_001903260.1| ATP-dependent DNA helicase Lhr, probable [Xanthomonas campestris pv. campestris str. B100] gi|167733010|emb|CAP51208.1| ATP-dependent DNA helicase Lhr, probable [Xanthomonas campestris pv. campestris] Length = 1464 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY E+ AQQ L+ V T+RMAE +L E RV H Sbjct: 252 PLSVVLSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ R L+ G+ VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSSRSIATFLQRA 366 Query: 676 GRAARNVNS 684 GR+ V Sbjct: 367 GRSGHAVGG 375 >gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1] Length = 560 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR A++L L R + +H ++ +R + R G+ VLV ++ GLDIPE Sbjct: 130 TKREADELANELIHRGLESEALHGDLAQTQRERALGAFRSGRVGVLVATDVAARGLDIPE 189 Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691 LV L D E ++ RS + GRA R + +I+Y D Sbjct: 190 VDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIIMYGD 227 >gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] Length = 538 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L + + L+ V KR + + +L E+N +H + ER E +RD + GK D+L Sbjct: 376 LESNGSSKCLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGKMDIL 435 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 V ++ GLDI V D K + + IGR R N Sbjct: 436 VATSVAARGLDIKNVAHVVNFDLPK-----TIDEYVHRIGRTGRVGN 477 >gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82] Length = 498 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR+A+D+T+YL + +H + + ER ++ + + G+ +L+ ++ Sbjct: 309 KVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVAS 368 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + G V D F + I IGR R Sbjct: 369 RGLDVKDVGYVINYD-----FPNNCEDYIHRIGRTGR 400 >gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis SK355] Length = 1167 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNIAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ + + + LK+G + L+ L + YKR + +G + + Sbjct: 130 LLPDPID----------FKTTNINLKVGQEYDLNNLVKMLSRSGYKRVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF D +R+ FG++I+ I F P I NVE+I I Sbjct: 180 GDILDIFERS-ADSPYRLEFFGDEIDGIRIFNPENQTSIENVESILI 225 Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 ++L Q GR R S I YA + + ++ + + +R E Sbjct: 909 STLYQLRGRVGR---SNRIAYAYLMYRPDKILTEVSEKRLE 946 >gi|281209492|gb|EFA83660.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 880 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q+GL +L+ V +K A++L + L NI V +HS+ +R +I+ R GK VL+ Sbjct: 622 QKGLEPPVLIFVQSKERAQELFQELIFDNINVDVIHSDRTQFQRDKIVEKFRTGKIWVLI 681 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D V D F ++ S + IGR R Sbjct: 682 CTELMARGMDFKGVNYVINFD-----FPKTVASYVHRIGRTGR 719 >gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016] gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016] Length = 1148 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + +R +++ + A +L E + F P V +F + YD Sbjct: 21 LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + I + + Q+ +++H +VV + ++ + Sbjct: 81 FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + L Y+ D G F V G I++FP E + +R+ Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE+I++ + P A+ + Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 GR E ++ R + L + + IE Y E TLF+Y+P+D+ + Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281 Query: 472 F 472 F Sbjct: 282 F 282 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H+EVKT+E+ E++ + R+G +F+VLV Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907 >gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1] Length = 1148 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + +R +++ + A +L E + F P V +F + YD Sbjct: 21 LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + I + + Q+ +++H +VV + ++ + Sbjct: 81 FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + L Y+ D G F V G I++FP E + +R+ Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE+I++ + P A+ + Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 GR E ++ R + L + + IE Y E TLF+Y+P+D+ + Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281 Query: 472 F 472 F Sbjct: 282 F 282 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H+EVKT+E+ E++ + R+G +F+VLV Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907 >gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str. Challis substr. CH1] gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str. Challis substr. CH1] Length = 1167 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLL+G++GS K +A ++ Q+ +VM A +L S+ + V Y+ Sbjct: 30 QLLMGLSGSTKALAIASALDEHQK-ILVMTSGYSEAEKLSSDLISLLGEEKV------YN 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSCI-YGIGSVE 288 + +A P + + I R A LL+ N+ I+V+++S + + Sbjct: 83 FLADDA--PMAEFIFSSQEKI-----YARLGALNFLLDDNESGILVTNLSASRLFLPNPN 135 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA- 347 I++LK+G L++ L+K Y+++ +G F + GD ++IF + ++ Sbjct: 136 ELKSSILELKVGQEYSLDSLVNFLIKIGYRKESQVFNQGEFSLRGDILDIFDK--DSISP 193 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 +R+ FG++I+ I F + I N+ + I+ + + A K I+E +K Sbjct: 194 YRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLADEDYLRAQKKIEEAVK 250 >gi|73965819|ref|XP_850033.1| PREDICTED: similar to Probable ATP-dependent helicase LGP2 (Protein D11Lgp2 homolog) isoform 2 [Canis familiaris] gi|73965821|ref|XP_860532.1| PREDICTED: similar to Probable ATP-dependent helicase LGP2 (Protein D11Lgp2 homolog) isoform 3 [Canis familiaris] gi|73965823|ref|XP_860567.1| PREDICTED: similar to Probable ATP-dependent helicase LGP2 (Protein D11Lgp2 homolog) isoform 4 [Canis familiaris] Length = 678 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R+G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 422 EVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLSNEISMVQARGRA 472 >gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1] gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus pyogenes SSI-1] Length = 1167 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + +R+ ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E + I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGVFI 222 >gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 685 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE R+ R+ + D+ + + +Q IL+ V TK+ A+ L E+LY V +H + Sbjct: 438 VEDRNKRSYLLDLLNATPIRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRT 497 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQ 673 ER + ++ R G VLV + GLDIP V D +D E ++ +T + Sbjct: 498 QREREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMG 557 Query: 674 TIGRAARNVNSK 685 +G A N K Sbjct: 558 NLGLATSFFNDK 569 >gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97] Length = 1417 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DL+ GK ++LV ++L EG+D+ C LV D K+ LR S +Q GRA + + Sbjct: 518 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKQSSK 572 Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708 VI YA DT T A+++ + R Sbjct: 573 FVIFYAEDDTATHKDWEAMEDIMKER 598 >gi|305433019|ref|ZP_07402175.1| DNA helicase RecG [Campylobacter coli JV20] gi|304443720|gb|EFM36377.1| DNA helicase RecG [Campylobacter coli JV20] Length = 604 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186 ++I N KD+ F + DQ A+ + K +HS+E K ++++G G GKT + Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265 Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 + + AI+MAP ILA QLY E K P Sbjct: 266 AALMVYPKQAILMAPTSILANQLYEEAKKLLP 297 >gi|302389589|ref|YP_003825410.1| transcriptional regulator, TrmB [Thermosediminibacter oceani DSM 16646] gi|302200217|gb|ADL07787.1| transcriptional regulator, TrmB [Thermosediminibacter oceani DSM 16646] Length = 732 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 12/97 (12%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQ 208 +Q A+ +++K + + K LL G+TGSGKT K IE A + A+V+ P L Q Sbjct: 202 EQARALEEIIKNMEAERKPVLLFGITGSGKTEVYIKAIERLLARGKRALVLVPEISLTPQ 261 Query: 209 LYSEFKNFFP------HNAV---EYFVSYYDYYQPEA 236 + F N FP H+ + E F+ +Y Y+ +A Sbjct: 262 MMERFYNRFPGRVAMIHSGLSRSERFLEWYRIYKGDA 298 >gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2] Length = 1148 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + +R +++ + A +L E + F P V +F + YD Sbjct: 21 LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + I + + Q+ +++H +VV + ++ + Sbjct: 81 FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + L Y+ D G F V G I++FP E + +R+ Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE+I++ + P A+ + Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 GR E ++ R + L + + IE Y E TLF+Y+P+D+ + Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281 Query: 472 F 472 F Sbjct: 282 F 282 Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H+EVKT+E+ E++ + R+G +F+VLV Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907 >gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa PAO1] gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa LESB58] gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa PAO1] gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa LESB58] Length = 1148 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + +R +++ + A +L E + F P V +F + YD Sbjct: 21 LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + I + + Q+ +++H +VV + ++ + Sbjct: 81 FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + L Y+ D G F V G I++FP E + +R+ Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE+I++ + P A+ + Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 GR E ++ R + L + + IE Y E TLF+Y+P+D+ + Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281 Query: 472 F 472 F Sbjct: 282 F 282 Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H+EVKT+E+ E++ + R+G +F+VLV Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907 >gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)] Length = 519 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TKR E L + L E+ + ++H ++ +R II D++ GK +LV ++ G Sbjct: 284 IIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVATDVAARG 343 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDET 704 +D+ G+ + + D R + IGR+ R + + + +I QL AI+ Sbjct: 344 IDV--SGITHVFNYD---LPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRPQLDAINRY 398 Query: 705 TRR 707 +R Sbjct: 399 LKR 401 >gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum JL354] Length = 1163 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 83/224 (37%), Gaps = 39/224 (17%) Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209 S QP A L +G + MA + A + A+ +AP+ Sbjct: 9 SAKQPLTFANLARG----------------SQPLVMADLARAAHKRAVFVAPDD------ 46 Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSL 266 +A+ Y+ PE V P D +S I R SA L Sbjct: 47 ----------SAMRAVADAARYFAPELSVIELPAWDCLPYDRASPALSISTQRLSALHRL 96 Query: 267 LERNDC---IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V ++ + + + + + + +LK G + + L L KQ Y R D Sbjct: 97 QAEKGAPQLLVTTANAVVQRMLTPFRIREAVRELKPGVHIGHESLTQLLQKQGYSRTDTV 156 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 I G F V G +IFPS LE R+ FG+++E + F P T Sbjct: 157 IDAGEFAVRGSIFDIFPSGLEQ-GLRLDFFGDELESLRLFDPNT 199 >gi|118469068|ref|YP_886743.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2 155] gi|118170355|gb|ABK71251.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2 155] Length = 753 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 11/96 (11%) Query: 602 LYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 LYER +R+ MH + E+ E++ R G+ DVLV ++ G+D+P ++ Sbjct: 561 LYERLRNGPLEGLRLGLMHGRLSGDEKDEVMSRFRAGEIDVLVCTTVIEVGVDVPNSTVM 620 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 ++DAD+ G + L Q GR R + + L A Sbjct: 621 VVMDADRFGI----SQLHQLRGRIGRGQHPSLCLLA 652 >gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1] Length = 685 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G + L+ TKR + L L R +R +H + + ER I+ D R G ++L+ ++ Sbjct: 536 GQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDV 595 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDI + V D K + S I IGR R N + Sbjct: 596 ASRGLDIQDVKFVINYDVPK-----NIESYIHRIGRTGRAGNKGTAI 637 >gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49] gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49] gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG] Length = 685 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G + L+ TKR + L L R +R +H + + ER I+ D R G ++L+ ++ Sbjct: 536 GQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDV 595 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDI + V D K + S I IGR R N + Sbjct: 596 ASRGLDIQDVKFVINYDVPK-----NIESYIHRIGRTGRAGNKGTAI 637 >gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii] Length = 710 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D + GK +LV ++ Sbjct: 532 RTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILVATSVAA 591 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILY 689 GLDIPE V D K + + IGR R N+ V Y Sbjct: 592 RGLDIPEVQHVVNFDLPK-----NIDEYVHRIGRTGRCGNIGRAVSFY 634 >gi|320547460|ref|ZP_08041746.1| DNA helicase RecG [Streptococcus equinus ATCC 9812] gi|320447805|gb|EFW88562.1| DNA helicase RecG [Streptococcus equinus ATCC 9812] Length = 671 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L+ Y ++R V MH +K E+ I++D + K VLV ++ G+++P ++ Sbjct: 486 EELSAY-FDRTAEVSLMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKS 696 I+DAD+ G + L Q GR R S IL A+ T++ Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGQKQSYAILVANPKTQT 582 >gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum] Length = 549 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 T++ ++ EI + G +I++ V TK+ E +T + MH + ER ++ Sbjct: 346 TKLNNLLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVL 405 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+ R GK +L+ ++ GLD+ G+ +++ D + S I IGR R Sbjct: 406 REFRNGKSSILIATDVAARGLDVE--GIKYVINYD---YPNSSEDYIHRIGRTGR 455 >gi|327398488|ref|YP_004339357.1| primosomal protein N' [Hippea maritima DSM 10411] gi|327181117|gb|AEA33298.1| primosomal protein N' [Hippea maritima DSM 10411] Length = 638 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 7/72 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676 I+ DLR GK D+L+G +L +G DI + GLV ++D + + R+ + ++QT G Sbjct: 444 IVNDLRAGKIDILIGTQMLSKGHDISQIGLVVVVDFESLFVMPDFRAEERAVSLIMQTAG 503 Query: 677 RAARNVNSKVIL 688 R+ R +VI+ Sbjct: 504 RSGRKEPGRVII 515 >gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei] gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei] Length = 405 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 9/112 (8%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + +L T+R + LT+ + E N V MH +++ +R E++++ R Sbjct: 261 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVA-ILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ LV+ +++ D ++ I IGR+ R Sbjct: 316 AGTTRVLISTDVWARGLDVPQVSLVSNVINYD---LPNNRELYIHRIGRSGR 364 >gi|170071047|ref|XP_001869798.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] gi|167866996|gb|EDS30379.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] Length = 222 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 81 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 135 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 136 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 181 >gi|78048183|ref|YP_364358.1| ATP-dependent DNA helicase Lhr [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036613|emb|CAJ24304.1| ATP-dependent DNA helicase Lhr [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1464 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 252 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ ++ L+ G VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAVQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GR+ V K L+ T + ++ A+ ++ RR E Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403 >gi|166714762|gb|ABY88095.1| UvrB [Stenotrophomonas sp. LMG 10991] Length = 60 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 34/51 (66%) Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 ++FP+ + A R+ +F ++E+I+ F PLTG+ +RN++ +Y +HY T Sbjct: 3 DVFPADRDSEALRIELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYAT 53 >gi|166714734|gb|ABY88090.1| UvrB [Pseudoxanthomonas dokdonensis] Length = 61 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 +++FP+ + A R+ +F ++E++S F PLTG+ +R + IY +HY T R Sbjct: 2 VDVFPAESDSEAVRIELFDGEVEQLSMFDPLTGETLRRLPRFTIYPKNHYATTR 55 >gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa C3719] gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa C3719] Length = 1148 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + +R +++ + A +L E + F P V +F + YD Sbjct: 21 LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + I + + Q+ +++H +VV + ++ + Sbjct: 81 FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + L Y+ D G F V G I++FP E + +R+ Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE+I++ + P A+ + Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 GR E ++ R + L + + IE Y E TLF+Y+P+D+ + Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281 Query: 472 F 472 F Sbjct: 282 F 282 Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H+EVKT+E+ E++ + R+G +F+VLV Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907 >gi|301773535|ref|XP_002922173.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Ailuropoda melanoleuca] gi|281344530|gb|EFB20114.1| hypothetical protein PANDA_011148 [Ailuropoda melanoleuca] Length = 684 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R+G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 422 EVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 472 >gi|229604971|ref|YP_002875670.1| putative helicase [Lactococcus phage P087] gi|227825954|gb|ACP41678.1| putative helicase [Lactococcus phage P087] Length = 508 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 L + L + I +++ S+ K ER + ++D + + VL+G+N+ EG D+P C + + Sbjct: 237 LAKMLQDSGITAQFVSSKSKKRERTQYVKDFKEHRTQVLIGVNIFIEGFDVPACDSMYMF 296 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 RS + Q+IGR R K I Sbjct: 297 RP-----TRSVSVWFQSIGRVLRLAEGKTI 321 >gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA] gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA] Length = 523 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|166714732|gb|ABY88089.1| UvrB [Stenotrophomonas koreensis] Length = 61 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 +++FP+ + A R+ +F ++E++S F PLTG+ +R + IY +HY T R Sbjct: 2 VDVFPAESDSEAVRIELFDGEVEQLSMFDPLTGETLRKLPRYTIYPKNHYATTR 55 >gi|171779290|ref|ZP_02920261.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282346|gb|EDT47773.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 671 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 14/118 (11%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + EDL+EY + V MH +K E+ I++D + K VLV ++ G+++P + Sbjct: 484 LHEDLSEY-FADCANVALMHGRMKNEEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREK 710 + I+DAD+ G + L Q GR R + S IL A+ T ET ++R K Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKT--------ETGKKRMK 588 >gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185] gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185] Length = 420 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ L + V MHS+++ ++R ++ D + G+ ++LV +++ Sbjct: 246 RVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRINILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V L Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44] gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44] Length = 1176 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 69/334 (20%), Positives = 138/334 (41%), Gaps = 51/334 (15%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I ++ G+ K QL+ G+ S ++ MA + + ++ +V+ N A ++Y + + Sbjct: 14 IQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDLVSL 73 Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 V E S PE R + R + Sbjct: 74 LGEQDVWLYPVNELIASEIGVASPELKAQRIEVL------------------NRLAMGEQ 115 Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 IVV + E + Q +++ +G ++ + LL +L Y+R+ + G F Sbjct: 116 GIIVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLEALLHTLHHIGYERKSMVEAPGEFS 175 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 + G ++I+P E++ +R+ F +++ I F +V + V P Sbjct: 176 LRGGILDIYPL-TEELPFRIEFFDTEVDSIRLF---------DVGEQRSQDKKDSVRFGP 225 Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE---------QRITYDLEMLETTGSCQS 441 T + EELK+ + LE EG + QRL + +++++E+L+ + Q+ Sbjct: 226 A--TEFLFSNEELKLGVERLE-EGLMKTMQRLSDDKIKTAVLETVSHEIEVLK---NGQT 279 Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 IE +YL+ + +L +Y+PE+ ++ +DE Sbjct: 280 IEQMFKYLSIFY--KEHASLIDYLPENGVVILDE 311 Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 860 RVTYAHGKMNEGELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 917 -SQLYQLRGRVGRS 929 >gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054] gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054] Length = 616 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A GL I+ T TKRMA++L ++LY++ +H + ER + + + G +LV Sbjct: 391 AGDAGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILV 449 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N + Sbjct: 450 ATAVAARGLDIPNVAHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 493 >gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4] gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4] Length = 1160 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/229 (20%), Positives = 101/229 (44%), Gaps = 18/229 (7%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 +KG+ S Q L +TG+ + ++AK+ E +V+ P+ A +L +E Sbjct: 12 VKGVKSP---QTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPK 68 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH--SATRSLLERNDCIVVSSV 278 ++ + P+ D++ + ++++++ + SA SL ++V Sbjct: 69 SIPVMLF------PDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSL------VIVPMS 116 Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338 + + + + ++ L GD+ + + S LV Y + G F V G I++ Sbjct: 117 TLMVKLPPQSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDL 176 Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 FP + +R+ +F +++E I EF P T + +E+I++ + T Sbjct: 177 FPMGAQS-PYRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPT 224 >gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 420 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 9/98 (9%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ TK + L + L++ +++VR HS+++ ER +I+ D + K ++LVG ++L Sbjct: 246 IIIFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLNILVGTDVLSR 305 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G+DI LV D D E + I IGR AR Sbjct: 306 GIDIEGIDLVVNYDVPGDPEDY-------IHRIGRTAR 336 >gi|300121739|emb|CBK22314.2| unnamed protein product [Blastocystis hominis] Length = 754 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+RD + GKF+VLV + EGLDI E L+ + + S T L+Q GR R Sbjct: 494 EILRDFKAGKFNVLVATCIAEEGLDIGEVDLLVCYEG-----ISSSTRLLQRKGRTGRKR 548 Query: 683 NSKVIL 688 + +V++ Sbjct: 549 SGRVVM 554 >gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC 49175] gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC 49175] Length = 1180 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 92/211 (43%), Gaps = 16/211 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+LG++GS K + E + + +++ P + A Q Y E ++ + V F Sbjct: 27 QLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLF----- 81 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES- 289 P ++ S ++ + R L IV+ +S I + + Sbjct: 82 --------PVEESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAAL 133 Query: 290 YSQMIVQLKIGDSVEQKE-LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + + ++L +G +E + + LV+ Y+R+++ G F + G ++I+P ++ Sbjct: 134 WKKSSIELAMGSEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLD-QEYPL 192 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 R+ F +++ I F T + + +E ++I Sbjct: 193 RLDFFDTEVDSIRAFNAETQRSMDVIEEVRI 223 >gi|167957441|ref|ZP_02544515.1| excinuclease ABC subunit B [candidate division TM7 single-cell isolate TM7c] Length = 49 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 29/41 (70%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181 F++++ Y P+GDQP AI L G+ ++ Q LLGVTGSGK Sbjct: 3 FKLKSKYKPTGDQPEAIKSLTAGLSRGDREQTLLGVTGSGK 43 >gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1140 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 2/152 (1%) Query: 257 RMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 R R +L N +VV+SV+ + ES + LK+G + LL L++ Sbjct: 99 RDRILTINQILAGNRSLVVTSVAAFLRKLPEKESLKGKSITLKLGVDFPLEALLVELIQL 158 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y R+++ G F + G ++I+ +L + R+ FG+ ++EI F P T + I+ ++ Sbjct: 159 GYHREEVCEQFGHFSLKGGILDIYTPYLTNPV-RIDFFGDTVDEIRTFDPNTQKSIQKID 217 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 + I A + + + L + E + RL Sbjct: 218 EVLITAANETIVTKSELEHYHNLLNEYSEKRL 249 >gi|50302639|ref|XP_451255.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660701|sp|Q6CXT4|IF4A_KLULA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=Translation initiation factor 1 gi|49640386|emb|CAH02843.1| KLLA0A05731p [Kluyveromyces lactis] Length = 396 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD I++ + ++ T+R E+LTE L E N V ++S+++ ER I+++ R Sbjct: 254 DLYDSISVT-----QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G +L+ +LL G+D+ + LV D ++KE ++ Sbjct: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 346 >gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1] gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3 Length = 581 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 50/96 (52%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 +E R ++ +V E +++ RIL+ L K+ A + +L + IRV +H +++ Sbjct: 394 LEPRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRKGIRVGGIHGDLRQ 453 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 +R + + G+ VLV ++ GLDIPE LV Sbjct: 454 EQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLV 489 >gi|256824929|ref|YP_003148889.1| RecG-like helicase [Kytococcus sedentarius DSM 20547] gi|256688322|gb|ACV06124.1| RecG-like helicase [Kytococcus sedentarius DSM 20547] Length = 741 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Query: 596 EDLT----EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 EDL E+L R IRV +H ++T + ++ G+ DVLV ++ G+D+P Sbjct: 547 EDLVVTAREHLAGRGIRVEMVHGRMQTETKDGVMAAFAAGEVDVLVATTVVEVGVDVPNA 606 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++ ++DAD+ G L Q GR R + + L Sbjct: 607 SVMLVVDADRFGI----AQLHQLRGRIGRGAHPGLCL 639 >gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC 6260] Length = 666 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A GL I+ T TKRMA++L ++LY++ +H + ER + + + G +LV Sbjct: 452 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILV 510 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 + GLDIP + +++ D G + I GRA Sbjct: 511 ATAVAARGLDIPN--VSHVVNYDLPGDIDDYVHRIGRTGRAG 550 >gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas] Length = 758 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + L+ V KR A+ L YL + +H + ER E +RD +LGK VL+ ++ Sbjct: 563 KTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKLGKAPVLIATSVAA 622 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSI 697 GLDIP V D +S + IGR R N+ + Y++ ++ Sbjct: 623 RGLDIPLVKHVINYD-----LPQSIDEYVHRIGRTGRCGNLGKAISFYSNDTDGAL 673 >gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas asaccharolytica PR426713P-I] gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas asaccharolytica DSM 20707] gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas asaccharolytica PR426713P-I] gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 438 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 17/169 (10%) Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-- 583 ++ SAT L+ + I+V+ ++ + PP +S YD L + L Sbjct: 184 VMFSATMPKEILKLSESILVDPVLVELAVAKPP---KSIMQTAYICYDAQKLPIIRSLFT 240 Query: 584 -------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 R ++ TK L + L + V MHS++ R E++RD R+G+ VL Sbjct: 241 NPESEVSRTIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVL 300 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 V +++ G+DI + +V + R + IGR AR + K Sbjct: 301 VATDIVARGIDIDDIAVVINYEVP-----RDFEDYVHRIGRTARGADGK 344 >gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1 Length = 647 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A GL I+ T TKRMA++L ++LY++ +H + ER + + + G +LV Sbjct: 422 AGDAGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILV 480 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N + Sbjct: 481 ATAVAARGLDIPNVAHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 524 >gi|154250254|ref|YP_001411079.1| primosomal protein N' [Fervidobacterium nodosum Rt17-B1] gi|154154190|gb|ABS61422.1| primosomal protein N' [Fervidobacterium nodosum Rt17-B1] Length = 775 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%) Query: 618 TLERIEIIRD-LRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKT 669 T E+++ + D LR GK D++ G ++ +GLDI L+ ++D D LR+ Sbjct: 560 TPEKLKKLLDYLREGKIDIVAGTKMITKGLDIYRIALIGVVDVDALISYPDINAPLRTFQ 619 Query: 670 SLIQTIGRAARNVNSKVIL 688 L+Q IGRA RN K I+ Sbjct: 620 LLVQVIGRAGRNEKGKAII 638 >gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM 70294] gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM 70294] Length = 650 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA++LT++L ++ R +H + ER + + G ++LV Sbjct: 414 ASNDGL-TLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLV 472 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ V Sbjct: 473 ATAVAARGLDIPNVTHVVNYDLPSD-----IDDYVHRIGRTGRAGNTGV 516 >gi|188989455|ref|YP_001901465.1| putative ATP-dependent helicase [Xanthomonas campestris pv. campestris str. B100] gi|167731215|emb|CAP49387.1| putative ATP-dependent helicase [Xanthomonas campestris pv. campestris] Length = 839 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I E++ PTG L +PPV +R SAR Sbjct: 247 PQFILCSATIGN-PHAHAQALIEERVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 305 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 306 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 362 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 363 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 417 Query: 679 AR 680 R Sbjct: 418 GR 419 >gi|21229532|ref|NP_635449.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766404|ref|YP_241166.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|21110998|gb|AAM39373.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571736|gb|AAY47146.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] Length = 802 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I E++ PTG L +PPV +R SAR Sbjct: 210 PQFILCSATIGN-PHAHAQALIEERVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 268 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 269 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 325 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D +V + L G+DI +V + G+ S + Q GRA Sbjct: 326 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 380 Query: 679 AR 680 R Sbjct: 381 GR 382 >gi|85095256|ref|XP_960042.1| hypothetical protein NCU05782 [Neurospora crassa OR74A] gi|74615933|sp|Q7S5R1|DBP3_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-3 gi|28921501|gb|EAA30806.1| hypothetical protein NCU05782 [Neurospora crassa OR74A] Length = 614 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 +VDP R ++ ++ E +Q+ RIL+ L K+ A + ++L + I+V +H Sbjct: 426 VVDP----RGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGIKVASIH 481 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 +++ +R + + G VLV ++ GLDIPE LV Sbjct: 482 GDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLV 522 >gi|323702705|ref|ZP_08114366.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM 574] gi|323532368|gb|EGB22246.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM 574] Length = 685 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 7/123 (5%) Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 L + A DL E L + + RV +H +K E+ ++ R G DVLV ++ G+D Sbjct: 484 LDTQAAIDLFERLQKALPSCRVGLLHGRMKANEKESVMTAFRQGSLDVLVSTTVIEVGVD 543 Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETTR 706 +P ++ I DA + G L Q GR R S IL A+ TK Q I R Sbjct: 544 VPNATVMVIWDAQRFGL----AQLHQLRGRVGRGSQQSYCILVANPTTKEAQERIKAMCR 599 Query: 707 RRE 709 ++ Sbjct: 600 TQD 602 >gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 903] gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis ATCC 903] Length = 1164 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 104/214 (48%), Gaps = 15/214 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +L+LG++ + K MA +++++ A+++ + A +L S+F V F+ + Sbjct: 26 ELILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASDFIALLGEEKVHTFLGDDN 84 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 + + E++ S E ++ + + +L N VS + + + S + + Sbjct: 85 PLAEFVFASQ-----ERQFSRLEALNFLCQEDRQGILVTN----VSGIKLL--LPSPKVF 133 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVAWR 349 + I QLK+ ++ L +L K Y++ + +G F + GD ++IF L+ +R Sbjct: 134 ASSIFQLKVDQEIDLTTLSETLQKIGYQKVSQVLQQGEFSLRGDILDIFEIDQLQ--PYR 191 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 + FG++I+ I F P + + + NVE +++ A S Sbjct: 192 IEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVS 225 Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196 F+ Y + DQ +I ++ K + S R +LL+G G GKT M +A+ + Sbjct: 604 FEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQV 663 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223 V+ P +LA Q Y+ FK F AVE Sbjct: 664 AVLVPTTVLAQQHYANFKERFESFAVE 690 >gi|254571423|ref|XP_002492821.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia pastoris GS115] gi|238032619|emb|CAY70642.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia pastoris GS115] Length = 403 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD I++ + ++ T+R E+LTE L + V +HSE+ ER I+++ R Sbjct: 254 DLYDSISVT-----QAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G +L+ +LL G+D+ + LV D ++KE ++ Sbjct: 309 TGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 346 >gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3] gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3] Length = 1208 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 22/177 (12%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP + + A L S + + V F S+ + E PR DT ++ + + Sbjct: 54 RPVLAVVATGREAEDLASALGSLLGPDVVTVFPSW-ETLPHERLSPRADTVGQRLAVLR- 111 Query: 254 QIDRMRHSAT--RSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306 R+ H A+ R L IVV+S+ + G+G + V L GD+ + Sbjct: 112 ---RLAHPASTGRPPLR----IVVASIRAVLQPQVAGLGELAP-----VTLAEGDTADLD 159 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +++ LV Y R D+ RG V G +++FP E+ RV FG+++E+I F Sbjct: 160 GVVTRLVDIAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRVEFFGDEVEDIRRF 215 >gi|258645745|ref|ZP_05733214.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470] gi|260403114|gb|EEW96661.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470] Length = 697 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 6/105 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L ++++ + V +H +K E+ +++ D R GKF +LV +++ G+++P+ ++ Sbjct: 513 ENLRDHVFPQ-FGVGLVHGRMKNAEKEQVMEDFRKGKFKLLVATSVIEVGVNVPDATVMF 571 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQL 699 + AD+ G + L Q GR R + +LY D ++ QL Sbjct: 572 VYGADRFGL----SQLHQLRGRVGRGKEQAYCVLYTDNQNETTQL 612 >gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1 Length = 637 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A GL I+ T TKRMA++L ++LY++ +H + ER + + + G +LV Sbjct: 423 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILV 481 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 + GLDIP + +++ D G + I GRA Sbjct: 482 ATAVAARGLDIPN--VSHVVNYDLPGDIDDYVHRIGRTGRAG 521 >gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC 6260] Length = 666 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A GL I+ T TKRMA++L ++LY++ +H + ER + + + G +LV Sbjct: 452 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILV 510 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 + GLDIP + +++ D G + I GRA Sbjct: 511 ATAVAARGLDIPN--VSHVVNYDLPGDIDDYVHRIGRTGRAG 550 >gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp. PRwf-1] gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1] Length = 516 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 7/134 (5%) Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 NL Q+ + + ++ TKR E L + L E+ + ++H ++ +R II D++ GK Sbjct: 273 NLLTQKDVNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKIT 332 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694 +LV ++ G+D+ G+ + + D R + IGR+ R + + + +I Sbjct: 333 ILVATDVAARGIDV--SGITHVFNYD---LPRQTEDYVHRIGRSGRAGRTGIAINICSID 387 Query: 695 KSIQL-AIDETTRR 707 QL AI+ +R Sbjct: 388 DRAQLDAINRYLKR 401 >gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 503 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 26/195 (13%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R + +H ++ +R+ ++R + G DVLV ++ GLDI Sbjct: 249 TKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D + S + IGR R + A+ T R Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGR-------------AGKMGAAMTFVTPRETG 350 Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK-AHLKSLRK 769 QL HNI ++ K K ME + P L++A I A +L+ S +G ++ K L + Sbjct: 351 QL-----HNIE-RTTKRK-MERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAE 403 Query: 770 QMHLAADNLNFEEAA 784 ++ D+++ AA Sbjct: 404 ELLEEHDSVSLVAAA 418 >gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium aromaticivorans DSM 12444] gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium aromaticivorans DSM 12444] Length = 1164 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L G + ++ L++ L +Q Y R D + G + V G +IFPS L D R+ FG++ Sbjct: 130 LTPGTEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSVFDIFPSGL-DHGLRLDFFGDE 188 Query: 357 IEEISEFYPLTGQKIRNVET 376 +E + F P T + ++ VET Sbjct: 189 LETLRLFDPNTQRSVQPVET 208 >gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax] Length = 637 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + YL + + +H + + ER + + D R GK VLV ++ Sbjct: 454 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 513 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 514 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 549 >gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus] Length = 379 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD ++L + L+ T+R + L E L RN +H ++ ER I+++ R Sbjct: 238 DLYDHLSLT-----QTLIFCNTRRQVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFR 292 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GK +L+ NLL G+D+ + LV D ++ + I IGR+ R Sbjct: 293 DGKTRILLSTNLLARGIDVQQISLVINYDLP-----HNRENYIHRIGRSGR 338 >gi|213389870|gb|ACJ45997.1| putative ATP-dependent DNA helicase [Palm lethal yellowing phytoplasma] Length = 623 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 171 QLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 +L+ G GSGKT F A + A ++ ++MAP +IL+ Q YS FKNFFP Sbjct: 265 RLIQGDVGSGKTIISFISAIAVIAKKKQVVMMAPTEILSKQHYSNFKNFFP 315 >gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae] gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16] Length = 400 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + +L T+R + LT+ + E N V MH +++ +R E++++ R Sbjct: 259 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ LV D ++ I IGR+ R Sbjct: 314 AGNTRVLISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGR 359 >gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca glomerata] gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca glomerata] Length = 1238 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 + G+G +E V L +GDS + E++ LV Y R D+ RG V G +++FP Sbjct: 139 VAGLGDLEP-----VTLAVGDSADLGEVVDRLVGVAYHRVDLVERRGEIAVRGGILDVFP 193 Query: 341 SHLEDVAWRVSMFGNDIEEISEF 363 E+ RV FG+++E+I F Sbjct: 194 P-TEEHPLRVEFFGDEVEDIRPF 215 >gi|221105179|ref|XP_002169963.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 597 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 +K A+ LTE+L V +HS+ LER +++ D R FDVLV +L+ GLDI Sbjct: 379 SKAKADSLTEFLLAEQFHVAAIHSDKTQLERNQVLSDFRENLFDVLVATDLMSRGLDI 436 >gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium fasciculatum] Length = 418 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK + LT + E N V +H ++ ER EIIR R Sbjct: 276 DIYDSLTIT-----QAVIFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFR 330 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++L G+D+ + LV D D+E + I IGR+ R Sbjct: 331 SGENRVLITTDILARGIDVQQVSLVINYDLPMDRENY-------IHRIGRSGR 376 >gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis O35E] Length = 581 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TK E L L E + RY+H ++ +R I+ D++ GK DVLV ++ G Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 +DI V D R + IGR R + V + +I + QL Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQL 370 >gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC 700122] gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC 700122] Length = 721 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 + G R+++ TK A++ T+ L + I +H++ +R + + R GK VLV Sbjct: 262 RGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVAT 321 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--ITKSI 697 ++L G+D+PE V ++ D I GRA + + DT + KSI Sbjct: 322 DVLSRGIDVPEVDYV--INYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSI 379 Query: 698 QLAIDET 704 Q ID+T Sbjct: 380 QKFIDQT 386 >gi|182414607|ref|YP_001819673.1| primosomal protein N' [Opitutus terrae PB90-1] gi|177841821|gb|ACB76073.1| primosomal protein N' [Opitutus terrae PB90-1] Length = 745 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 7/66 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675 E++ R GK DVLVG ++ +GLD P LV ++DAD + R+ L+Q Sbjct: 540 EVLSQFRAGKIDVLVGTQMIGKGLDFPNVTLVGLIDADMSMHIPDFRANERTFQLLVQVA 599 Query: 676 GRAARN 681 GRA R Sbjct: 600 GRAGRG 605 >gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 461 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V T+ AE + E LY+ I H + R +++++ R ++ VLV +L Sbjct: 270 RVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAA 329 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 G+DI GL A+++ D R+ + IGR R S V Sbjct: 330 RGIDI--AGLPAVVNYD---LPRAAADYVHRIGRTGRAGASGV 367 >gi|240168966|ref|ZP_04747625.1| ATP-dependent DNA helicase RecG [Mycobacterium kansasii ATCC 12478] Length = 738 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%) Query: 599 TEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 E LY R N+R+ MH + E+ + R G+ DVLV ++ G+D+P Sbjct: 543 AEGLYARLSSRELANLRLGLMHGRLSADEKDAAMAAFRAGRIDVLVCTTVIEVGVDVPNA 602 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 ++ ++DAD+ G + L Q GR R + + L A + Sbjct: 603 TVMLVMDADRFGI----SQLHQLRGRIGRGAHPSLCLLASWV 640 >gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074] gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074] gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074] Length = 1177 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + FT+A + R + + A L + + P + V + S+ + E Sbjct: 38 AARPFTVAALARETGRTVLAVTATGREAEDLAAALRTLLPPDGVVEYPSW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHS-----ATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 PR+DT + + + R+ H T + + + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLAHPDAGDPETGPVSVVVASVRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V LK G + + +E++ +L Y R ++ RG F V G +++FP ED R+ + Sbjct: 149 -VALKAGRTTDLEEVVRALAAAAYSRVELVEKRGEFAVRGGILDVFPP-TEDYPVRIEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+++EEI F K+ + +++I + + P Sbjct: 207 GDEVEEIRYF------KVADQRSLEIAEHGLWAPP 235 >gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|319400180|gb|EFV88415.1| type III restriction enzyme, res subunit [Staphylococcus epidermidis FRI909] Length = 952 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +VE + + N G L+ L+ V +++ A L L +R I + + Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRKEAYQLANQLSKRGISSVGLTGKDSIAY 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I+ L+ G + ++ ++L EG+DIPE V +L K + IQ +GR R Sbjct: 490 RTETIKQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 544 Query: 681 NVNSK 685 N+K Sbjct: 545 KSNNK 549 >gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115] gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115] Length = 602 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR A++L L R + +H ++ +R + R G+ VLV ++ GLDIPE Sbjct: 249 TKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPE 308 Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691 LV L D E ++ RS + GRA R + +I+Y D Sbjct: 309 VDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIIMYGD 346 >gi|19343863|gb|AAH25508.1| Ifih1 protein [Mus musculus] Length = 467 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 203 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 257 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 258 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 316 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 317 ELQVQSILEKKMKVKRSIAKQ 337 >gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336] gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336] Length = 1144 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 25/257 (9%) Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYS 291 QP + P +T S +++I R SA L N I ++ ++ + + E Sbjct: 64 QPVTFFPDWETLPYDNFSPHQEIISARLSALFQLQHSNKGIFIAPITTVMQRVCPAEFLQ 123 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 ++ +K GD + + L Y+ + + G F V G +++FP V +R+ Sbjct: 124 HNVLLIKRGDRLNIERFRLQLENAGYRAVEQVLEHGEFAVRGALLDLFPMG-SAVPFRLD 182 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 F ++I+ I F T + + ++ I + + PT +++ + + + E+ Sbjct: 183 FFDDEIDSIRTFDVDTQRTLEEIQRINLLPAQEF----PTDRKGIEFFRSQFRETFAEIR 238 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 ++ + + Q+I+ G+ S Y + L TLF+YIPE++ L Sbjct: 239 RD-----PEHIYQQIS--------KGTLVSGIEYWQPLFFNQMA----TLFDYIPENT-L 280 Query: 472 FVDESHVTIPQISGMYR 488 FVD + +PQ Y+ Sbjct: 281 FVDFEQI-VPQAERFYQ 296 >gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353] gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|330465972|ref|YP_004403715.1| type iii restriction protein res subunit [Verrucosispora maris AB-18-032] gi|328808943|gb|AEB43115.1| type iii restriction protein res subunit [Verrucosispora maris AB-18-032] Length = 1024 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 +R L ++ AE + ++ +R + + SEV E+ ++IRD + GK VL ++L Sbjct: 551 MRALGFCVSIGHAEFMADWFTQRGVSAAAVTSEVSRPEQRDLIRDFKAGKLRVLFTVDLF 610 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 EG+D+P + +L + S T +Q +GR R + K L Sbjct: 611 NEGVDLPMVDTIFLLRPTE-----SATIFLQQLGRGLRLDDDKPCL 651 >gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818] Length = 1435 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DL+ GK ++LV ++L EG+D+ C LV D K+ LR S +Q GRA + + Sbjct: 483 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKQSSK 537 Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708 VI YA DT T A+++ + R Sbjct: 538 FVIFYAEDDTATHKDWEAMEDIMKER 563 >gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160] gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408] gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool] Length = 694 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G + L+ TKR + L L R +R +H + + ER I+ D R G ++L+ ++ Sbjct: 545 GQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDV 604 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDI + V D K + S I IGR R N + Sbjct: 605 ASRGLDIHDVKFVINYDVPK-----NIESYIHRIGRTGRAGNKGTAI 646 >gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 400 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 15/153 (9%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+ +G +I++ + M + + L ++ + + S+++ ER +RD + GKF++L Sbjct: 237 LSPFEGQKIIIFTSQRSMIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKFNIL 296 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 V ++L G+DI LV D R I IGR AR ADT S Sbjct: 297 VATDVLSRGIDISNLNLVVNFDVP-----RDAEDYIHRIGRTAR---------ADTEGVS 342 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729 I + E R+ K +E + + Q + E + Sbjct: 343 ITF-LTEKDRKAVKDIEALLEKEVEVQRITENL 374 >gi|301617487|ref|XP_002938176.1| PREDICTED: Fanconi anemia group M protein-like [Xenopus (Silurana) tropicalis] Length = 2037 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSE----VKTL---ERIEIIRDLRLGK 632 RI++ + +++ E L + + VR M HS VK E++E+++ R G Sbjct: 559 RIMIFSSFRDSVQEIAEMLNQHHPTVRVMTFVGHSSAGKGVKGFTQKEQLEVVKRFREGG 618 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692 F+ LV + EGLDI E L+ DA K S L+Q +GR R ++++ Sbjct: 619 FNTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRQGRIVVILCQ 673 Query: 693 ITKSIQLAIDETTRRR--EKQLEHNKKHNINPQS 724 + ++ +R + L +NK ++NPQS Sbjct: 674 GREERTYNQSQSNKRSIFKAILGNNKMLHLNPQS 707 >gi|154687662|ref|YP_001422823.1| ComFA [Bacillus amyloliquefaciens FZB42] gi|154353513|gb|ABS75592.1| ComFA [Bacillus amyloliquefaciens FZB42] Length = 461 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 16/150 (10%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 V D + Q L + L V + + + T+Y + NIR +H+E R + ++ R Sbjct: 316 VTDWVRQKLQSHLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAE--DTFRKDKVKRFRN 373 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVI 687 G+ D+LV +L G+ +P+ +L A+ F ++++L+Q GR R + + V+ Sbjct: 374 GRLDLLVTTTILERGVTVPKVQ-TCVLGAEAPIF--TESALVQIAGRTGRHYKHFSGDVV 430 Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKK 717 ++ IT ++ A +K +EH K Sbjct: 431 MFHFGITSGMKKA--------KKHIEHMNK 452 >gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150] gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150] Length = 1168 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/313 (20%), Positives = 130/313 (41%), Gaps = 41/313 (13%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225 QLL+G +GS K MA + +++ + A QL + + V F Sbjct: 28 QLLMGFSGSSKAVVMASALSEQVPKILIVTSTQNEAEQLTGDLSAILGEDKVYSFFADDV 87 Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284 + + + PE +T + +E S+N +D+ E + +V S V + Sbjct: 88 SAAEFIFASPE----KTHSRLE---SLNFLMDK----------EASGILVTSLVGTKLHL 130 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 + + Y + L +G+ + + L L Y+R + G F GD ++I+ E Sbjct: 131 PNPKVYKDSRIDLALGEEHDLEALSKHLSNIGYQRVEQVFSPGEFSRRGDILDIYELTAE 190 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 + +R+ FG++I+ I +F + + + N+E + + + R A K ++ E+ Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLDNLEHVIVSPADDIILTREDYQRAEKALESEVS 249 Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 + EG Y E+L T ++ ++L+ + TLF+Y Sbjct: 250 ------KSEG---------PHKAYLEEVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDY 292 Query: 465 IPEDSLLFVDESH 477 +P+ + +F+D+ H Sbjct: 293 LPKGTPVFIDDFH 305 >gi|307703246|ref|ZP_07640192.1| helicase conserved C-terminal domain protein [Streptococcus oralis ATCC 35037] gi|307623321|gb|EFO02312.1| helicase conserved C-terminal domain protein [Streptococcus oralis ATCC 35037] Length = 291 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 15 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 72 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 73 SGVTHVYNYD---IPQDPESYVHRIGRTGR 99 >gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium nitrogenifigens DSM 19370] gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium nitrogenifigens DSM 19370] Length = 1161 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK G + ++ L++ L +Q Y R D + G + V G +IFPS L D R+ FG++ Sbjct: 130 LKPGIEIGRETLIALLQRQGYARTDTVVDTGEYAVRGGVFDIFPSGL-DHGLRLDFFGDE 188 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 +E + F P T + ++ VE SH + P Sbjct: 189 LETLRLFDPSTQRSVQPVE-------SHLLLP 213 >gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus gordonii str. Challis substr. CH1] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA41301] Length = 524 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDIAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLEHNKKHNINPQSVKE 727 K L+ P SV+E Sbjct: 362 MKGLK--------PASVEE 372 >gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] Length = 548 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Query: 521 LRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQVEDVYD 573 L PT TI+ SAT E ++ + + P +IR + TQ D+ Sbjct: 178 LPPTCQTIMFSATMPDKIEELANTLLKNPVTIKLAVSKPAEKIRQSAYVCYETQKMDIIK 237 Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 I A R+++ +K+ + +T+ L ++N+ MHS+++ +R +++ + G+ Sbjct: 238 NI-FNAGDLKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQL 296 Query: 634 DVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 DV+V +++ G+DI + +V D D E + + IGR AR Sbjct: 297 DVIVATDIISRGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338 >gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1] gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1] Length = 1148 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 121/309 (39%), Gaps = 50/309 (16%) Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226 Q LLG +TG+ +A+++E + P +++ P+ A +LY E + F + ++ Sbjct: 16 QRLLGELTGAACATEVAEIVERHRGPVVLVTPDMQNALRLYDEIRQFTDQMVMSLADWET 75 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282 YD + P + I S Q+ M+ +L++R V S ++ Sbjct: 76 LPYDSFSPHQEI------ISSRLSTLYQLPAMQRGVLIVPVNTLMQR-----VCPHSYLH 124 Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 G V +K G + + L + L Y+ D + G + G +++FP Sbjct: 125 GHALV---------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 E +R+ F ++I+ + F T + + VE I + + PT TA++ + + Sbjct: 176 SEQ-PYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKTAIELFRSQ 230 Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462 + R + D E + S ++ Y EP P LF Sbjct: 231 WRDRF-----------------DVKRDAEHIYQQVSKGTLPTGIEYWQPLFFSEPLPALF 273 Query: 463 EYIPEDSLL 471 Y P ++L+ Sbjct: 274 SYFPANTLI 282 >gi|289613420|emb|CBI59610.1| unnamed protein product [Sordaria macrospora] Length = 580 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 +VDP R ++ ++ E +Q+ RIL+ L K+ A + ++L + ++V +H Sbjct: 392 VVDP----RGKEFRLYEILKEAQKGSQKDDRILVFCLYKKEAVRVEQFLTRKGMKVASIH 447 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +++ +R + + G VLV ++ GLDIPE LV + F + + Sbjct: 448 GDLRQDQRTRSLEAFKSGSTSVLVATDVAARGLDIPEVKLVVNVT-----FPLTIEDYVH 502 Query: 674 TIGRAAR 680 IGR R Sbjct: 503 RIGRTGR 509 >gi|242212453|ref|XP_002472060.1| predicted protein [Postia placenta Mad-698-R] gi|220728883|gb|EED82768.1| predicted protein [Postia placenta Mad-698-R] Length = 599 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT+ E I RY++S +ER ++ + G F VLV +L EG DIP V + Sbjct: 279 LTDAFREAGIDARYVYSGTPAVERRALVEMFKAGGFPVLVNCAVLTEGTDIPNIDCVVVA 338 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 RS+ + Q IGR R Sbjct: 339 RP-----TRSRNIVAQMIGRGMR 356 >gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC 43243] gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC 43243] Length = 1177 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 29/276 (10%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYS 211 A + KG+ + +L G SGK A +I+A+ A +++ ++ A ++ Sbjct: 18 AGYESITKGLSVQGSAMMLSGCIDSGK----AHMIQALGADAFCRVIITYDEAKAREIVD 73 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-N 270 + + FF N V Y P D + ++ R A R+++E Sbjct: 74 DSR-FFNRNTVFY--------------PAKDLIFYSADIRSNELTSQRMKAIRAIIENEG 118 Query: 271 DCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR--G 327 D VV+++ C + + E I+ + G V+ +L LV Y +++G ++ G Sbjct: 119 DLTVVTTIDGCADMLMTREKLESGILTFEEGGIVDLAQLKKQLVLLGY--ENMGQVQAPG 176 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 F V G I+IFP ++ R+ ++ ++I+ I F + + I ++ + IY + YV Sbjct: 177 EFGVRGGIIDIFPL-TDETPVRIELWDDEIDSIRSFDVESQRSIERLQKVTIYPATEYVL 235 Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423 + ++ + I +E+ + +K + E RL+ Sbjct: 236 TQVEIDDGVAAINDEVAKQADIFKKADKYEELSRLK 271 >gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU121] Length = 1169 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 21/194 (10%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L +GD ++ + L+ LV Y+R+ + G F + G I+I+P L Sbjct: 131 VEMWRNHQMTLNVGDDMDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGA 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +I+ I +F T + N+E+++I S Y+ +N +K + Sbjct: 189 PVRIELFDTEIDSIRDFDVETQRSNDNLESVEITTASDYIITDEVINHLQTQLKTAYEDT 248 Query: 407 LIELEKEGR-----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461 ++EK R E+ +L + +D ++L + + P T+ Sbjct: 249 RPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DQPSTI 294 Query: 462 FEYIPEDSLLFVDE 475 +Y D ++ VDE Sbjct: 295 IDYFANDVVIAVDE 308 >gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae] gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae] Length = 613 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V TK+ ++L ++ + V +H + ++R ++ D R G+ ++LV ++ Sbjct: 367 KIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRHNILVATDVAA 426 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ G+ +++ D F +S + IGR R Sbjct: 427 RGLDVD--GIKYVINFD---FPQSSEDYVHRIGRTGR 458 >gi|165928449|ref|ZP_02224281.1| helicase conserved C- domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165919545|gb|EDR36878.1| helicase conserved C- domain protein [Yersinia pestis biovar Orientalis str. F1991016] Length = 361 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + E + GL + V KR + L E + E ++V +++ E R + L Sbjct: 197 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 256 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ DVL+G +L G+D+P G V + K ++ + Q +GR R Sbjct: 257 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 303 >gi|70732836|ref|YP_262603.1| hypothetical protein PFL_5535 [Pseudomonas fluorescens Pf-5] gi|68347135|gb|AAY94741.1| lhr [Pseudomonas fluorescens Pf-5] Length = 1474 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612 PPV + + A E VY+ + A++ L+ V T+R+AE L +L ER + V Sbjct: 296 PPVPLSAVMANDVWELVYERLANLAREHRTTLIFVNTRRLAERLARHLSERLGKQAVAAH 355 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H + +R+E + L+ G VL+ L G+DI + LV + G RS ++ + Sbjct: 356 HGSLAKEQRLEAEQRLKAGDLQVLIATASLELGIDIGDVDLVCQI-----GSPRSISAFL 410 Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 Q +GR+ V K L+A T I+ A+ + RR E Sbjct: 411 QRVGRSGHQVGGTPKGRLFALTRDDLIECAALLDCVRRGE 450 >gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius SK126] gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius SK126] Length = 1168 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 66/344 (19%), Positives = 139/344 (40%), Gaps = 36/344 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G +GS K MA + +++ + A QL + + V F + D Sbjct: 28 QLVMGFSGSSKAVVMASALSEQVPKILIVTSTQNEAEQLTGDLSAILGEDKVYSFFTD-D 86 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 E + + S+N +D+ E + +V S V + + E Y Sbjct: 87 VVAAEFIFASPEKTHSRLESLNFLMDK----------ESSGILVTSLVGTKLHLPNPEVY 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + L +G+ + + L L Y+R + ++ G F GD ++I+ E + +R+ Sbjct: 137 KDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLLPGEFSRRGDILDIYELTAE-LPYRL 195 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++I+ I +F + + + N+E I + + R A K ++ + Sbjct: 196 EFFGDEIDGIRQFDSDSQKSLDNLEHIIVSPADDIILTREDYQRAEKALESAVS------ 249 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 + EG Y E+L T ++ ++L+ + TLF+Y+P+ + Sbjct: 250 KAEG---------PHKAYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFDYLPKGTP 298 Query: 471 LFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPSC 507 +F+D+ + +++ + D H+ +L+ + + S Sbjct: 299 VFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYLVDSF 342 >gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827] gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827] Length = 1187 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 29/224 (12%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGS------GKTFTMAKVIEAMQR--PAIVMAPNKI 204 QP ++ LL + + ++ L GS G V A+ R P + + Sbjct: 3 QPGPLSGLLTAVLPDKALRALADAAGSPELELEGPPAARPLVAAALSRTSPVLAVTATGR 62 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 A +L S ++ AV F S+ + E PR DT + + R+ H R Sbjct: 63 EAEELASVLRDLVGPEAVAIFPSW-ETLPHERLSPRADTVGARLQVLR----RLAHPGDR 117 Query: 265 SLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 L VV++V + G+G +E + L G + LL L + Y R Sbjct: 118 PLR-----AVVATVRSLIQPMAPGLGDLEP-----LDLATGSEHDFDALLHRLAELAYTR 167 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 D+ RG F V G +++FP E RV +G+++ EI F Sbjct: 168 VDMVEKRGEFAVRGGILDVFPPTAEH-PLRVEFWGDEVTEIRPF 210 >gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66] gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] Length = 642 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 ++ V TK EDL + L R ++ ++ +R I +LR GK D+LV ++ Sbjct: 268 VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDILVATDVAAR 327 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R ++ IL+ K + AI+ Sbjct: 328 GLDVERISHVVNFDIPHDTESYVHR----IGRTGRAGRKGDA--ILFMTPREKYLLRAIE 381 Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 + TR+ Q++ ++N + + +K + ID Sbjct: 382 KATRQPVTQMQLPSLDSVNDRRI-QKFTDRID 412 >gi|227522311|ref|ZP_03952360.1| helicase [Lactobacillus hilgardii ATCC 8290] gi|227090518|gb|EEI25830.1| helicase [Lactobacillus hilgardii ATCC 8290] Length = 451 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 609 VRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + +H++ KT +R +I+ D + G VL ++L+ EG D+P+C +V +L + L Sbjct: 241 IEAVHADAKTPKAKRDQIMHDFKNGNIKVLCNVDLISEGFDVPDCSVVIMLRPTESLVLD 300 Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726 + S+ R R ++KV D + + + +T R+ + KK N +S+ Sbjct: 301 IQQSM-----RCMRYKSNKVATIIDHVANYTRFGLPDTPRQWSLEGRPKKKRKNNTKSIP 355 Query: 727 EK 728 K Sbjct: 356 VK 357 >gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III (Eukaryotic translation initiation factor 4A isoform 3) (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA helicase DDX48) (DEAD box protein 48) (Eukaryotic initiation factor 4A-like NUK-34) (Nucl... [Ciona intestinalis] Length = 409 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + + N V MH ++ ER EI++ R Sbjct: 268 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFR 322 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 323 SGESRVLICTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 368 >gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058] Length = 523 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool] Length = 673 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER + +R R G+ DVLVG ++ + Sbjct: 478 VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRAFREGRKDVLVGTDVASK 537 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLD P V D KE + + IGR R + V Sbjct: 538 GLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGV 574 >gi|322390145|ref|ZP_08063679.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903] gi|321143176|gb|EFX38620.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903] Length = 671 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 E + + RV +H ++K+ E+ I++ + + DVLV ++ G+++P ++ I+DA Sbjct: 489 EAFFGQRARVSLLHGKMKSEEKDAIMQAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDA 548 Query: 660 DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 D+ G + L Q GR R N S IL A+ T S Sbjct: 549 DRFGL----SQLHQLRGRVGRGNKQSYAILVANPKTDS 582 >gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B] gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B] Length = 1153 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/298 (21%), Positives = 127/298 (42%), Gaps = 38/298 (12%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L + G+ +A++ + ++++ P+ +A +L +E + F + VS + + Sbjct: 21 LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQTVSLFPDW 75 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291 + Y D + + I+E+I R+ L + D I + VS + S ++ Sbjct: 76 ETLPY----DNFSPHQEIISERIARLYQ-----LPSQRDGITIVPVSTVLQRQSPRNFLL 126 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 Q + +K GD + ++L L Y+ D G + G +++FP D +R+ Sbjct: 127 QHTLMVKTGDRISLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSND-PYRID 185 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 F ++I+ I F P + I +++ I++ + PT A++ + + + Sbjct: 186 FFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ----- 236 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 +A+R + I M T G+ + Y + L + TLFEY+PEDS Sbjct: 237 -----FDARREPESIY----MQVTKGTWPAGIEYWQPLFFDH----TETLFEYLPEDS 281 Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ AEDL + + E I V + + LERI + D +F+VLV ++ G+D+P Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + AD G L Q GR R+ Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909 >gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24] gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24] gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24] Length = 1184 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + F +A + RP + + A L + ++ P + + S+ + E Sbjct: 38 AARPFAIAALARETGRPVLAVTATGREAEDLAAALRSLLPPEGIVEYPSW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ V + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G + +E++ +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 149 -VALRTGQGADLEEIVQALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae] Length = 618 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 407 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 466 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 467 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 511 >gi|68076513|ref|XP_680176.1| RNA helicase-1 [Plasmodium berghei strain ANKA] gi|56501072|emb|CAH93553.1| RNA helicase-1, putative [Plasmodium berghei] Length = 632 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E L+ + G +L+ K+ +D+ EYL + I +H + E Sbjct: 413 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGINAIAIHGSLGQTE 472 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E I R G+ DVLVG ++ +GLD P V D K+ + + IGR R Sbjct: 473 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 527 >gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM 11300] gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM 11300] Length = 591 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR A++L L R I +H ++ +R + R G+ VLV ++ GLDIPE Sbjct: 254 TKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPE 313 Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691 LV L D E ++ RS + GRA R + +++Y D Sbjct: 314 VDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIVMYGD 351 >gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis KF147] gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus lactis subsp. lactis KF147] Length = 547 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 6/169 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L L R R MH ++ +R+ ++RD + G DVLV ++ GLD+ Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + + S + IGR R S + + + AI+ T++ Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKKPM 362 Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 K L+ K S+ + +V+ + + A D Q SL +K Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEK 411 >gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335] gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335] Length = 570 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK +L+E L R + +V +R + LR GK D+LV ++ Sbjct: 248 MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVAAR 307 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + IL+ K + +I+ Sbjct: 308 GLDVERISHVINYDMPYDPEAYVHR----IGRTGRAGR--EGEAILFVTPREKRLLSSIE 361 Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742 +TR+R +++E +N Q ++ ++ + + ED+A Sbjct: 362 RSTRQRIERMEMPSTEVVNDQRIERFKQKITNALAQEDSA 401 >gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a] Length = 617 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510 >gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP23-BS72] gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP23-BS72] Length = 511 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLEHNKKHNINPQSVKE 727 K L+ P SV+E Sbjct: 362 MKGLK--------PASVEE 372 >gi|315656087|ref|ZP_07908978.1| transcription-repair coupling factor [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493089|gb|EFU82689.1| transcription-repair coupling factor [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1165 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 14/172 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+AP+ A QL E + VE F + + E PRTDT + +++ Sbjct: 47 ERLTVVLAPSTRAATQLARELGAY--TAGVELFPDW-ETLPHERLSPRTDTMARRIWALH 103 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 R+ H + + V ++++ + + Y VQ +GD+ ++ + + L Sbjct: 104 ----RVTHPHPQDAVHFLVMPVRAALAPVNA--HIADYPLFTVQ--VGDTYDRDTMAADL 155 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363 ++ Y+R D+ RG F V G +++F P+ V R+ +FG++++ I F Sbjct: 156 LRLGYERVDMVGARGQFAVRGGLLDVFSPTAAHPV--RIELFGDEVDTIRAF 205 >gi|312199937|ref|YP_004019998.1| helicase domain protein [Frankia sp. EuI1c] gi|311231273|gb|ADP84128.1| helicase domain protein [Frankia sp. EuI1c] Length = 859 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 6/104 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ LTK AE+LT +L + V H + ERI DL + LV + L G Sbjct: 405 IVYTLTKPAAEELTGFLRAQGHTVAVYHGGTEPAERIAAEEDLLANRVKALVATSALGMG 464 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688 D P+ G V + A S S Q IGRA R V ++V+L Sbjct: 465 FDKPDLGFVVHVGAPS-----SPISYYQQIGRAGRGVERAEVVL 503 >gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum] Length = 776 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%) Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 T++ ++ EI + G +I++ V TK+ E +T + MH + ER ++ Sbjct: 360 TKLNNLLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVL 419 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 R+ R GK +L+ ++ GLD+ G+ +++ D + S I IGR R+ Sbjct: 420 REFRNGKSSILIATDVAARGLDVE--GIKYVINYD---YPNSSEDYIHRIGRTGRS 470 >gi|254821178|ref|ZP_05226179.1| ATP-dependent DNA helicase RecG [Mycobacterium intracellulare ATCC 13950] Length = 739 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 11/103 (10%) Query: 595 AEDLTEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 A + E LY R ++R+ MH + E+ ++ R G+ DVLV ++ G+D Sbjct: 540 APETAEGLYARLRSGELAHLRLGLMHGRLSGDEKDAVMAAFRAGEIDVLVCTTVIEVGVD 599 Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 +P ++ ++DAD+ G + L Q GR R + + L+A Sbjct: 600 VPNATVMLVMDADRFGI----SQLHQLRGRIGRGRHPSLCLFA 638 >gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis Il1403] gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis Il1403] gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis CV56] Length = 547 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 6/169 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L L R R MH ++ +R+ ++RD + G DVLV ++ GLD+ Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + + S + IGR R S + + + AI+ T++ Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKKPM 362 Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 K L+ K S+ + +V+ + + A D Q SL +K Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEK 411 >gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC 25745] gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC 25745] Length = 1165 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 10/180 (5%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L++G E + L+S L Y+R + +G F V G ++IFP + +D R+ F Sbjct: 138 ITLEVGAEYEFQTLISDLNALGYQRVEQVEKKGEFAVRGSVVDIFPLNQDD-PIRMDFFD 196 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 +I+ + F T + I N+E I++ + + LN A+K + EL +L +E Sbjct: 197 IEIDSLRTFDQATQRSIENIEKIEVLPATDLIINETKLNQAIKTMNNELAQAQKKLSEEN 256 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 EA L+Q I E++E Q I+ + Y + +L +Y+ + +L+ D Sbjct: 257 --FEA--LQQNIN---EVIERWKHHQLIQEDTMY--AKQLYAAKTSLLDYLTKGTLVLDD 307 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV Y+H ++ + +I+ + G++DVLV ++ G+DIP + + +AD G L Sbjct: 855 RVGYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENADHMG-LSQ 913 Query: 668 KTSLIQTIGRAAR 680 L IGR++R Sbjct: 914 LYQLRGRIGRSSR 926 >gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens FB035-09AN] gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens FB035-09AN] Length = 565 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 ++D++ NL R+++ +K+ + + L ++ I MHS++ ER E++ Sbjct: 236 IKDIFKAGNLQ-----RVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFK 290 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVN 683 + G+ DVLV ++L G+DI + +V D D E ++ +T+ G A VN Sbjct: 291 FKSGQIDVLVATDILARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVN 350 Query: 684 SKVILYADTITKSIQLAIDET 704 I Y I K ++ +++ Sbjct: 351 EDDIYYFQQIEKFLEKEVEKA 371 >gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM 15894] gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM 15894] Length = 1218 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 50/296 (16%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFVSYYDYYQPEAYVPRTDTYIEKE 248 A QRP +V+ A +L + + + P + + ++ E PR DT + Sbjct: 46 AKQRPVVVVTATGRQADELAASVRAYLPDEQADEVAVLPAWETLPHERLSPRADTVARRI 105 Query: 249 SSINEQIDRMRH--------SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300 + R+ H R L+ ++ VS G+G +E V L G Sbjct: 106 AVFR----RLAHPVPETGPAGPIRVLVMPARALLQPVVS---GLGELEP-----VALHDG 153 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 D + ++ LV Y R D+ RG F V G +++FP ED RV +G+++ EI Sbjct: 154 DVADLTDVAERLVAAAYSRVDMVERRGEFAVRGGILDVFPP-TEDHPLRVEFWGDEVSEI 212 Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTP-RPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419 F + + +++I + P R L TA ++ R A Sbjct: 213 RWF------SVADQRSLEIAQQGLWAPPCREILLTA------SVRAR------------A 248 Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 L + + +EML+ + ++E L E P L + +P+D+LL +DE Sbjct: 249 AALVETMPGAVEMLDRLAAGVAVEGMES-LAPVLVDELVPVL-DLVPDDALLVIDE 302 >gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays] gi|223945725|gb|ACN26946.1| unknown [Zea mays] Length = 672 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D+I + G +I++ TKRM + L L R +H + ER ++ D R G+ Sbjct: 393 DQILRSQDPGSKIIIFCSTKRMCDQLARNL-SRQYGASAIHGDKSQAERDSVLNDFRSGR 451 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYA 690 VLV ++ GLDI + +V D F + IGR R S + Sbjct: 452 CPVLVATDVAARGLDIKDIRIVVNYD-----FPTGVEDYVHRIGRTGRAGATGSAYTFFG 506 Query: 691 DTITK 695 D +K Sbjct: 507 DQDSK 511 >gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+] gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+] Length = 1406 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ T E IE + R GK ++LV ++L EG+D+P C LV DK L+ S IQ Sbjct: 408 DLTTKEDIESLHRFRKGKVNLLVATSVLEEGIDVPVCNLVICF--DKPSNLK---SFIQR 462 Query: 675 IGRAARNVNSKVILYADTITKSIQ 698 GRA N + +L+ D +S++ Sbjct: 463 RGRARMNESELWVLFKDDQDQSLE 486 >gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c] gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD box protein 1; AltName: Full=Helicase CA1 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces cerevisiae] gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291] gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118] gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c] gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23] Length = 617 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510 >gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927] gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei] gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei gambiense DAL972] Length = 401 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + +A ++ T++ E L + + + V +MH ++ ER EI+R+ R Sbjct: 260 DLYDTLTIA-----HAVIFCNTRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GK VL+ +L G+D+ + LV D S+ I IGR R Sbjct: 315 EGKSRVLISTDLWSRGIDVEQISLVLNYD-----LPFSREQYIHRIGRTGR 360 >gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056] Length = 523 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13] Length = 617 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510 >gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium pallidum PN500] Length = 1147 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ LT+ + E N V MH +++ ER EII+ R Sbjct: 280 DIYDSLTIT-----QAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFR 334 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++L G+D+ + LV D D+E + I IGR+ R Sbjct: 335 SGENRVLITTDILARGIDVQQVSLVINYDLPNDRENY-------IHRIGRSGR 380 >gi|47230040|emb|CAG10454.1| unnamed protein product [Tetraodon nigroviridis] Length = 1724 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E++ R G F+ LV + EGLDI E L+ DA K + T L+Q +GR Sbjct: 596 EQLEVVHRFRQGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQK-----NPTRLVQRMGRTG 650 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 651 RKRQGRIVV 659 >gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor A3(2)] gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces coelicolor A3(2)] Length = 1184 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + F +A + RP + + A L + ++ P + + S+ + E Sbjct: 38 AARPFAIAALARETGRPVLAVTATGREAEDLAAALRSLLPPEGIVEYPSW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ V + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G + +E++ +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 149 -VALRTGQGADLEEIVQALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC 700780] gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC 700780] Length = 1167 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 108/237 (45%), Gaps = 13/237 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLG++GS K+ +A +++ Q +VM A +L ++ + + V Y Sbjct: 30 QLLLGLSGSAKSLAIASSVKS-QNKILVMTSTYGEAERLVNDLISILGSDMV------YP 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ P + + + I +++ +R +S +R + + S ++ + + + Sbjct: 83 LLVDDS--PMVEFLVSSQEKIFSRVEALRFLRDKS--QRGILVCNVAASRLF-LPDPQVF 137 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 +++L+IG EQ EL + L+ YK+ + F + GD ++IF + + +R+ Sbjct: 138 DNSMLKLEIGQECEQNELKNQLISLGYKKVTQVQSQSEFSLRGDILDIFETS-QISPYRI 196 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 FG++I+ I EF T + + IY S + + K+++ E+ L Sbjct: 197 EFFGDEIDGIREFDTETQLSKDSKTQVLIYPASDILLTNEDYHRGQKFLEHEIDKAL 253 >gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus thermophilus ND03] Length = 528 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ IIRD + G+ D++V ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|164683438|gb|ABY66383.1| eukaryotic initiation factor 4A [Plutella xylostella] Length = 422 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++A + ++ T+R + LTE ++ER+ V MH ++ ER I+R R Sbjct: 281 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFR 335 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + V Sbjct: 336 TGSSRVLITTDLLARGIDVQQVSCV 360 >gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 503 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 26/195 (13%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R + +H ++ +R+ ++R + G DVLV ++ GLDI Sbjct: 249 TKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D + S + IGR R + A+ T R Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGR-------------AGKMGAAMTFVTPRETG 350 Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK-AHLKSLRK 769 QL HNI ++ K K ME + P L++A I A +L+ S +G ++ K L + Sbjct: 351 QL-----HNIE-RTTKRK-MERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAE 403 Query: 770 QMHLAADNLNFEEAA 784 ++ D+++ AA Sbjct: 404 ELLEEHDSVSLVAAA 418 >gi|116748877|ref|YP_845564.1| type III restriction enzyme, res subunit [Syntrophobacter fumaroxidans MPOB] gi|116697941|gb|ABK17129.1| type III restriction enzyme, res subunit [Syntrophobacter fumaroxidans MPOB] Length = 1077 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 ++ G R L ++R A+ + +Y + +R +HS +T R ++ L G+ DV+ Sbjct: 600 SRAGRRTLAFCCSQRHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDGELDVIFA 659 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 +++ EG+D+P V +L + S+ +Q GR R K Sbjct: 660 VDMFNEGVDLPNVDTVMMLRPTE-----SRILWLQQFGRGLRVAEGK 701 >gi|212379269|gb|ACJ24885.1| putative ATP-dependent helicase [Streptomyces pactum] Length = 1043 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 7/121 (5%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 V V D+++ A +R L +T A + + + I + + ER + + D Sbjct: 543 VRQVRDKVSDPAT--MRALGFCVTVAHATFMADVFCQEGINAKALDGTTPRAERAQALDD 600 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 LR GK +L ++L EGLD+P+ + +L S T +Q +GR R K + Sbjct: 601 LRDGKVQILFSVDLFNEGLDVPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTPHKAV 655 Query: 688 L 688 L Sbjct: 656 L 656 >gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 798 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 559 VEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 VE R+ + D+ I N ++ L+ V TK+ A+ L ++LY N V +H + Sbjct: 523 VEENDKRSHLLDLLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGD 582 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ER E ++ R G+ VLV + GLDIP V D E + I Sbjct: 583 RTQKEREEALKFFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAE-----VEEYVHRI 637 Query: 676 GRAAR--NVNSKVILYAD 691 GR R N+ + + D Sbjct: 638 GRTGRMGNLGTATSFFND 655 >gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 652 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 8/139 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 ++ V TK E+L + L R R ++ ++ +R + LR G DVLV ++ Sbjct: 288 VIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAAR 347 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ LV D D E ++ I GRA R+ ++ IL+ K + AI+ Sbjct: 348 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGRSGDA--ILFMTPREKYLLRAIE 401 Query: 703 ETTRRREKQLEHNKKHNIN 721 + TR+ +Q+ IN Sbjct: 402 KATRQPVEQMHLPSADTIN 420 >gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4] gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4] Length = 1153 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 61/301 (20%), Positives = 127/301 (42%), Gaps = 36/301 (11%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L + G+ +A++++ ++++ P+ +A +L +E + F + VS + + Sbjct: 21 LGNLPGAALPMAIAELVKQHSSHSVLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 + Y D + + I+++I R+ T+S N +V + + + Q Sbjct: 76 ETLPY----DNFSPHQEIISDRIARLYQLPTQS----NGVTIVPVSTVLQRQSPRDFLLQ 127 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + +K GD ++L L Y+ D G + G +++FP D +R+ Sbjct: 128 HTLMVKTGDQFSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDF 186 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 F ++I+ I F P + I +++ I++ + PT A++ + + + Sbjct: 187 FDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRTQF----- 237 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EA+R + I M T G+ + Y + L + TLF+Y+P+DS L Sbjct: 238 -----EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPDDSQLI 284 Query: 473 V 473 V Sbjct: 285 V 285 >gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4] gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName: Full=DEAD box protein 41 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4] Length = 671 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER I+ R GK DVLV ++ + Sbjct: 477 VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASK 536 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLD PE V D +E + I IGR R N V Sbjct: 537 GLDFPEIQHVINFDMPRE-----IENYIHRIGRTGRRGNKGV 573 >gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB] Length = 617 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510 >gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780] gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780] Length = 523 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|147678092|ref|YP_001212307.1| ATP-dependent DNA helicase RecG [Pelotomaculum thermopropionicum SI] gi|146274189|dbj|BAF59938.1| RecG-like helicase [Pelotomaculum thermopropionicum SI] Length = 690 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 R+ R+ +H ++K E+ +++ R G+ +LV ++ G+D+P ++ ILDAD+ G Sbjct: 506 RDCRLGLLHGQMKAEEKDKVMTSFRQGEIQILVTTTVIEVGVDVPNATVMIILDADRFGL 565 Query: 665 LRSKTSLIQTIGRAARNVN-SKVILYADTITK 695 L Q GR R + S IL AD T+ Sbjct: 566 ----AQLHQLRGRVGRGSHQSYCILVADPKTE 593 >gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36] gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36] Length = 488 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 213 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 270 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 271 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 326 Query: 709 EKQLE 713 K L+ Sbjct: 327 MKGLK 331 >gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4] gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName: Full=DEAD box protein 42 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4] Length = 986 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 +++ L QG +L+ V TK E L+ L + + +H + +ER + I+ + GK Sbjct: 542 NQLALLLSQG-SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGK 600 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692 ++L+ ++ GLDIP V D ++ + S T IGR R N+ V Y Sbjct: 601 INILIATDVAARGLDIPLIKNVVNYDTSRD--IESHT---HRIGRTGRAGNTGV-AYTLI 654 Query: 693 ITKSIQLAID 702 K I ++D Sbjct: 655 TPKDIHFSVD 664 >gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1] gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1] Length = 1160 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 7/155 (4%) Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERND---CIVVSSVSCIYGI 284 + P+A + P D S N I R + LLE+ D ++ + + + + Sbjct: 59 FVAPDAEILRFPGWDCLPYDRVSPNPAIVAERVATLTRLLEKADRPRIVLTTVMGLVQRV 118 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 +++ + + G+S++ L+ L+ Y R D + +G F G +IFP+ E Sbjct: 119 APRAAFAGQSITITAGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPAG-E 177 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 R+ +FG+++E I F P T + + ++ + Sbjct: 178 SEPVRLDLFGDEVENIRRFDPGTQRSTAKITSLTM 212 >gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115] Length = 523 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 551 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L L R R MH ++ +R+ ++RD + G DVLV ++ GLD+ Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + + S + IGR R S + + + AI++ T + Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNKEM 362 Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 K L+ K S+ + +V+ + E D Q SL +K Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEK 411 >gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box protein 3, X-chromosomal) (Helicase-like protein 2) (HLP2) (DEAD box, X isoform) [Ciona intestinalis] Length = 733 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D +N + L ++ T TK+ A+ L E+LY R + +H + ER E + R G+ Sbjct: 507 DLVNATDSKSLTLIFTE-TKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLAFRTGE 565 Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687 + +LV + GLDIP V D +D + ++ +T + IG A N+K + Sbjct: 566 YPILVATAVAARGLDIPNVRHVINFDLPSDVDEYVHRIGRTGRVGNIGLATSFFNNKNV 624 >gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767] gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii] Length = 630 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A GL I+ T TKRMA++L ++LY++ +H + ER + + + G +LV Sbjct: 410 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILV 468 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + GLDIP + D + + IGR R N Sbjct: 469 ATAVAARGLDIPNVSHIVNYDLPSD-----IDDYVHRIGRTGRAGN 509 >gi|282897435|ref|ZP_06305437.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9] gi|281198087|gb|EFA72981.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9] Length = 513 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L + +R+L +L A++ T Y R + + + + ER EI+ Sbjct: 315 EIALGTEGKMRVLADLLADHYPEMVLVFTADNTTVYRISRELLIPAITHQTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 + G + LV ++L EG+D+P + IL G +R T + I R N + Sbjct: 375 TKFKQGTYTTLVASHVLNEGVDVPAAAVAIILSG--TGSIREYTQRLGRILRKGNQGNKR 432 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN-PQSVKEK 728 ILY + I + +E T R K L + H+ N P+ ++K Sbjct: 433 AILY-EVIAEDTS---EEGTSIRRKGLRGMETHSGNRPEEKRKK 472 >gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba] gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba] Length = 792 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 558 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 618 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 661 >gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans] gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans] Length = 399 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + +L T+R + LT+ + E N V MH +++ +R E++++ R Sbjct: 258 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ LV D ++ I IGR+ R Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans] gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans] Length = 399 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + +L T+R + LT+ + E N V MH +++ +R E++++ R Sbjct: 258 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ LV D ++ I IGR+ R Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87] gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87] Length = 1169 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G+ ++ + L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 141 LKVGEDIDVEAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGSPVRIELFDTE 198 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N++ + I S Y+ + ++KE + ++EK R Sbjct: 199 VDSIRDFDVETQRSNENLDEVDITTASDYIITDEVIQYLQTHLKEAYEHTRPKIEKSVRN 258 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L + E P T+ +Y +D+++ Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPSTIIDYFRDDAVI 304 Query: 472 FVDE 475 VDE Sbjct: 305 AVDE 308 >gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix jacchus] Length = 437 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + ++++ TKR + LTE + E N V +H ++ E I+++ R Sbjct: 270 DLYDTLTIT-----QVVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPQKEWESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 AGTSQVLISTDVWARGLDVPQVSLIITYD-----LTNNRELYIHRIGRSGR 370 >gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea NRRL 2338] gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea NRRL 2338] gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea NRRL 2338] Length = 1195 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 18/175 (10%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253 RP +++ A ++ + + + VE F S+ + E PR DT + + + Sbjct: 53 RPVLLVTATGREAEEVAAAVSDLIGSDGVEVFPSW-ETLPHERLSPRADTVGRRLAVLRR 111 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKEL 308 H R ++V++V + G+G + V+L++GD + +EL Sbjct: 112 LAHPEEHDHGRIR------VLVTTVRSLIQPIAPGLGELAP-----VRLRVGDEHDFEEL 160 Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 + L Y R D+ RG F V G +++FP E+ RV +G+++ E+ F Sbjct: 161 VEKLAALAYNRVDMVEKRGEFAVRGGIVDVFPP-TEEHPLRVEFWGDEVTEVRPF 214 >gi|325918225|ref|ZP_08180371.1| helicase family protein with metal-binding cysteine cluster [Xanthomonas vesicatoria ATCC 35937] gi|325535566|gb|EGD07416.1| helicase family protein with metal-binding cysteine cluster [Xanthomonas vesicatoria ATCC 35937] Length = 831 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565 P I+ SAT G+ Q +I E++ PTG L +PPV +R SAR Sbjct: 239 PQFILCSATIGN-PHAHAQALIEERVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297 Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618 +Q + +A + GL+ L+ T+ M E LT+YL + + R+R Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER E+ R +R G D ++ + L G+DI +V + G+ S + Q GRA Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409 Query: 679 AR 680 R Sbjct: 410 GR 411 >gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] Length = 428 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++L Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like [Saccoglossus kowalevskii] Length = 694 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L ++LY R +H + ER E +R R G+ +LV + G Sbjct: 490 LVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEALRSFRTGQTPILVATAVAARG 549 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 550 LDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 593 >gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 1490 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DL+ GK ++LV ++L EG+D+ C LV D K+ LR S +Q GRA + + Sbjct: 517 IADLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKKSSK 571 Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708 VI YA DT T A+++ + R Sbjct: 572 FVIFYAEDDTATYKDWEAMEDIMKER 597 >gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD box protein 1; AltName: Full=Helicase CA1 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789] Length = 617 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510 >gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1873-00] gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6] gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54] gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031] gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585] gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6] gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1873-00] gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54] gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585] gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031] Length = 524 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLEHNKKHNINPQSVKE 727 K L+ P SV+E Sbjct: 362 MKGLK--------PASVEE 372 >gi|13278456|gb|AAH04031.1| Ifih1 protein [Mus musculus] Length = 514 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 250 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 304 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 305 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 363 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 364 ELQVQSILEKKMKVKRSIAKQ 384 >gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] Length = 428 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++L Sbjct: 239 FAEQTPERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|227545125|ref|ZP_03975174.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri CF48-3A] gi|300909204|ref|ZP_07126665.1| competence protein FA [Lactobacillus reuteri SD2112] gi|227184913|gb|EEI64984.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri CF48-3A] gi|300893069|gb|EFK86428.1| competence protein FA [Lactobacillus reuteri SD2112] Length = 444 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 18/195 (9%) Query: 525 TIVVSATPGSWELEQCQG--IIVEQI-IRPTGLVDPPVEIRSA---RTQVE------DVY 572 + ++ATPG L + + ++V + +R G + P +++R A R ++E V Sbjct: 235 CLYLTATPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKVRLAFGWRRRLERQQLPPQVI 294 Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 ++ ++G LL V + L R+ LER+E ++ +R G Sbjct: 295 QQLQETLKEGHHFLLFVPHIADLALVEAALRHSFTTFRFATVHASDLERLEKVQKMRDGD 354 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILY 689 +D LV ++L G+ PE V +L AD F S ++L+Q GRA R+ + +VI + Sbjct: 355 YDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALVQIAGRAGRSQSRPTGRVIFW 411 Query: 690 ADTITKSIQLAIDET 704 + + + A+ + Sbjct: 412 INCNCRQVNQAVSQV 426 >gi|312868533|ref|ZP_07728733.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405] gi|311096278|gb|EFQ54522.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405] Length = 671 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 E + + RV +H ++K+ E+ I++ + + DVLV ++ G+++P ++ I+DA Sbjct: 489 ETFFGQRARVSLLHGKMKSEEKDAIMQAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDA 548 Query: 660 DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 D+ G + L Q GR R N S IL A+ T S Sbjct: 549 DRFGL----SQLHQLRGRVGRGNKQSYAILVANPKTDS 582 >gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae TIGR4] gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6] gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae TIGR4] gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39] gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1087-00] gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae SP195] gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae MLV-016] gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI 1974] gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI 1974M2] gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS455] gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP-BS293] gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS292] gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS397] gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS457] gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS458] gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName: Full=Exported protein 9 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName: Full=Exported protein 9 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4] gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39] gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1087-00] gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae SP195] gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae MLV-016] gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104] gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200] gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS455] gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS292] gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP-BS293] gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS458] gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS457] gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS397] gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA17570] gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA41317] gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA47368] gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA47901] Length = 524 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLEHNKKHNINPQSVKE 727 K L+ P SV+E Sbjct: 362 MKGLK--------PASVEE 372 >gi|297622549|ref|YP_003703983.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093] gi|297163729|gb|ADI13440.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093] Length = 762 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 32/220 (14%) Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 V +M EDL + E R+ +H ++ E+ E++ R +FD+LV ++ G+DI Sbjct: 564 VSATKMFEDLQALMPE-ACRLGLLHGKMTGPEKDEVMERFRRHEFDLLVSTTVIEVGVDI 622 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 P ++ I +A++ G + L Q GR R + + L + ++R Sbjct: 623 PNASVMIIENAERFGL----SQLHQLRGRVGRGEHESFCI----------LVAGDRSKRT 668 Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLE--------DAATTNISIDAQQLSLSKKKG 760 + +L +KH + + EK +E+ P L+ D ++S D + + S++ Sbjct: 669 QHRLSVIEKHT-DGFVIAEKDLELRGPGELKGTRQSGMPDLVLGDLSKDTELIERSRE-- 725 Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800 L K+M A L A R+R+E+KR + F+ Sbjct: 726 ------LAKKMLAADPKLEAPWATRLREELKRRSRAVAFR 759 >gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM 20162] gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM 20162] Length = 1218 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 21/180 (11%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 A Q P +V+ A L SE + +AV F S+ + E P DT Sbjct: 54 AGQAPVLVVTATGREADDLTSELRETLGADAVTQFPSW-ETLPHERLSPGADT------- 105 Query: 251 INEQIDRMRHSATRSLLERNDCI--VVSSVSCIY-----GIGSVESYSQMIVQLKIGDSV 303 + ++ +R A + + VV++V + G+G S V L+ G+ Sbjct: 106 VGRRLQVLRRLAWPDDAQYGAPLRAVVATVRSLVQPMAPGLGDAPS-----VTLREGEEF 160 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 + +EL+ +LV+ Y R D+ RG F V G ++IFP+ D+ RV +G++I ++ F Sbjct: 161 DFEELIETLVELAYTRVDMVGKRGEFAVRGGILDIFPT-TTDLPVRVEFWGDEITDLRAF 219 >gi|258539134|ref|YP_003173633.1| comF operon protein 1 [Lactobacillus rhamnosus Lc 705] gi|257150810|emb|CAR89782.1| ComF operon protein 1 [Lactobacillus rhamnosus Lc 705] Length = 421 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL V AE L L R I ++ +R E + R G+ +VLV +L G Sbjct: 299 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 356 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697 + +P C + + AD E S ++LIQ GRA R +S V+ ++D T ++ Sbjct: 357 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 408 >gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi] gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi] Length = 399 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + L E L E N V MH E++ ER I+++ R Sbjct: 263 DLYDTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFR 317 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G +L+ ++ GLDIP+ LV D ++ I IGR+ R Sbjct: 318 GGASRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGR 363 >gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris NZ9000] Length = 551 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L L R R MH ++ +R+ ++RD + G DVLV ++ GLD+ Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + + S + IGR R S + + + AI++ T + Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNKEM 362 Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 K L+ K S+ + +V+ + E D Q SL +K Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEK 411 >gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC7] Length = 581 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TK E L L E + RY+H ++ +R I+ D++ GK DVLV ++ G Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 +DI V D R + IGR R + V + +I + QL Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370 >gi|320532424|ref|ZP_08033259.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135361|gb|EFW27474.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 294 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 10/151 (6%) Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 +++ P V ++ E PR DT ++ S + A R L+ Sbjct: 23 LRSYLPAEDVAVMPAWETLPH-ERLSPRADTVAQRLSVLRRLAHPEEGGAIRVLIVPVRA 81 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ I G+G +E VQL G +V +E L Y R D+ RG + V Sbjct: 82 LLAP---VIAGLGELEP-----VQLAPGLAVGLEETARRLEAAAYTRVDMVESRGEYAVR 133 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 G +++FP E RV FG++I+E+S F Sbjct: 134 GGILDVFPPS-EPRPVRVDFFGDEIDEVSSF 163 >gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14] gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14] Length = 1169 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G+ ++ + L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 141 LKVGEDIDVEAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGSPVRIELFDTE 198 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N++ + I S Y+ + ++KE + ++EK R Sbjct: 199 VDSIRDFDVETQRSNENLDEVDITTASDYIITDEVIQHLQTHLKEAYEHTRPKIEKSVRN 258 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L + E P T+ +Y +D+++ Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPSTIIDYFRDDAVI 304 Query: 472 FVDE 475 VDE Sbjct: 305 AVDE 308 >gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata] Length = 674 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + ++ TKR +D+T L + +H + ER ++++ R GK +L+ ++ Sbjct: 355 KTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKAPILIATDVAS 414 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + S I IGR AR N+ Sbjct: 415 RGLDIPDINFVVNYD-----YPNSGEDYIHRIGRTARAGNT 450 >gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697] gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697] Length = 428 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++L Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|328773151|gb|EGF83188.1| hypothetical protein BATDEDRAFT_29188 [Batrachochytrium dendrobatidis JAM81] Length = 472 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q+GLR +L+ V + A++L L I V MHSE +R II++ R GK VL+ Sbjct: 272 QEGLRPPVLIFVQSIDRAKELFHELVYDGINVDVMHSERTQTQRDTIIKNFRCGKIWVLI 331 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D LV D F ++ S + IGR R Sbjct: 332 ATELMARGIDFKGVNLVINYD-----FPQTVQSYVHRIGRTGR 369 >gi|118462797|ref|YP_882989.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104] gi|118164084|gb|ABK64981.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104] Length = 738 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 595 AEDLTEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 A + E LY R +R+ MH + E+ ++ R G DVLV ++ G+D Sbjct: 539 APETAEGLYARLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVD 598 Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 +P ++ ++DAD+ G + L Q GR R + + L+A Sbjct: 599 VPNATVMLVMDADRFGI----SQLHQLRGRIGRGEHPSLCLFA 637 >gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M143] gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M143] Length = 520 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|118374174|ref|XP_001020279.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila] gi|89302045|gb|EAS00033.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210] Length = 475 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++L + L E+N+ V MH E+ R I+++ R G VL+ +LL G+DI + Sbjct: 349 TKKRVDELRDKLIEKNMTVSAMHGEMDQQNRDLIMKEFRTGTSRVLITTDLLSRGIDIHQ 408 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D + K S I IGR+ R Sbjct: 409 VNLVINYDLPLK-----KESYIHRIGRSGR 433 >gi|222099483|ref|YP_002534051.1| Primosomal protein N [Thermotoga neapolitana DSM 4359] gi|61657423|emb|CAI44338.1| primosomal protein N [Thermotoga sp. RQ7] gi|221571873|gb|ACM22685.1| Primosomal protein N [Thermotoga neapolitana DSM 4359] Length = 735 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+++ +L Y ER + +E + I L G+ D+LVG ++ + D+PE Sbjct: 505 TEKIERELQRYFPERRVMRIDREVVEDVMEVEDYINRLISGEIDILVGTRMVTKSFDVPE 564 Query: 651 CGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYA-----DTITKSIQ 698 GLV +LD D F LR ++Q GRA+R + IL + I ++I+ Sbjct: 565 IGLVCVLDVDSLIFLPDFSASLRVFQLIVQVFGRASRKGTGRAILQTYNPDEEVIMRAIK 624 Query: 699 LAIDETTRRREKQLEHNKKHNINP 722 ++ E++LE K P Sbjct: 625 ---EDVEGFYERELERRKSLGYPP 645 >gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae Taiwan19F-14] gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae TCH8431/19A] gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae Taiwan19F-14] gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae TCH8431/19A] gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA04375] Length = 524 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLEHNKKHNINPQSVKE 727 K L+ P SV+E Sbjct: 362 MKGLK--------PASVEE 372 >gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c] gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD box protein 1 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae] gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae] gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c] Length = 604 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498 >gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa] gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa] Length = 399 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + L E L E N V MH E++ ER I+++ R Sbjct: 263 DLYDTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFR 317 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G +L+ ++ GLDIP+ LV D ++ I IGR+ R Sbjct: 318 GGASRLLISTDVFARGLDIPQVSLVVNYDLPN-----NRELYIHRIGRSGR 363 >gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 7169] gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 46P47B1] gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 103P14B1] gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC1] gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC8] gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 101P30B1] gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis CO72] Length = 581 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TK E L L E + RY+H ++ +R I+ D++ GK DVLV ++ G Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 +DI V D R + IGR R + V + +I + QL Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370 >gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi] Length = 850 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY + V +H + ER E +R R G+ +LV + G Sbjct: 618 LIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQDEREEALRLFRCGRCPILVATAVAARG 677 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 LDIP V D E + IGR R N Sbjct: 678 LDIPNVKHVINFDLPSE-----VEEYVHRIGRTGRMGN 710 >gi|229551736|ref|ZP_04440461.1| superfamily II DNA/RNA helicase [Lactobacillus rhamnosus LMS2-1] gi|229314867|gb|EEN80840.1| superfamily II DNA/RNA helicase [Lactobacillus rhamnosus LMS2-1] Length = 423 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL V AE L L R I ++ +R E + R G+ +VLV +L G Sbjct: 301 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 358 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697 + +P C + + AD E S ++LIQ GRA R +S V+ ++D T ++ Sbjct: 359 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 410 >gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] Length = 493 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 15/141 (10%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L E L +R R +H ++ +R ++R + G DVLV ++ GLDI Sbjct: 250 TKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDVAARGLDI-- 307 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR-- 708 G+ + + D + S + IGR R S + + T + + + E+ +R Sbjct: 308 SGVTHVFNFD---LPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVKLIESVSKRRM 364 Query: 709 --------EKQLEHNKKHNIN 721 E+ LE K+ +N Sbjct: 365 TQRPKPTYEEALEGQKQSTLN 385 >gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa] gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa] Length = 603 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 +++ +GL ++ V TKR A DL YL N V +H ++K ER + R G+ + Sbjct: 308 LDIDVNRGLALVF-VETKRGANDLAWYLQRNNYNVMPIHGDLKQYERERHLEMFRSGQTN 366 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 +LV + GLDIP V D + + IGR R N Sbjct: 367 ILVATAVAARGLDIPNVKHVINFDLPTD-----IDEYVHRIGRTGRAGN 410 >gi|308175279|ref|YP_003921984.1| helicase competence protein [Bacillus amyloliquefaciens DSM 7] gi|307608143|emb|CBI44514.1| helicase competence protein [Bacillus amyloliquefaciens DSM 7] gi|328555252|gb|AEB25744.1| helicase competence protein [Bacillus amyloliquefaciens TA208] gi|328913613|gb|AEB65209.1| helicase competence protein [Bacillus amyloliquefaciens LL3] Length = 461 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 V D + Q L + L V + + T+Y + NIR +H+E R + ++ R Sbjct: 316 VTDWVRQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTC--RKDKVKRFRE 373 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVI 687 G+FD+LV +L G+ +P+ +L A+ F ++++L+Q GR R + + V+ Sbjct: 374 GRFDLLVTTTILERGVTVPKVQ-TCVLGAEAPIF--TESALVQIAGRTGRHYKHFSGDVV 430 Query: 688 LYADTITKSIQLA 700 ++ +T ++ A Sbjct: 431 MFHFGMTNGMKKA 443 >gi|284050398|ref|ZP_06380608.1| primosome assembly protein PriA [Arthrospira platensis str. Paraca] Length = 875 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%) Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+A++LT E R IR + K RI ++ + D+LVG +L +GLD+ Sbjct: 638 TQRVAQELTRLFPELRFIRFDSDTTRTKNAHRI-LLTQFANREADLLVGTQMLTKGLDLD 696 Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 GLV I+ AD G L R+ +L+Q GRA R N +VIL T + Sbjct: 697 SVGLVGIVSAD--GLLHLSDYRANERAFQTLLQVAGRAGRGNDPGQVILQTYTPEHPVVE 754 Query: 700 AIDETTRRR--EKQLEHNKKHNINP 722 A+ E +L+H + N P Sbjct: 755 AVRNHAYDSFVETELQHRSELNYPP 779 >gi|41409107|ref|NP_961943.1| hypothetical protein MAP3009c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397927|gb|AAS05557.1| RecG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 738 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 595 AEDLTEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 A + E LY R +R+ MH + E+ ++ R G DVLV ++ G+D Sbjct: 539 APETAEGLYARLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVD 598 Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 +P ++ ++DAD+ G + L Q GR R + + L+A Sbjct: 599 VPNATVMLVMDADRFGI----SQLHQLRGRIGRGEHPSLCLFA 637 >gi|158317692|ref|YP_001510200.1| ATP-dependent DNA helicase RecQ [Frankia sp. EAN1pec] gi|158113097|gb|ABW15294.1| ATP-dependent DNA helicase, RecQ family [Frankia sp. EAN1pec] Length = 749 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 21/159 (13%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 +LA G I+ T LTK AE+LT +L + V H + ERI DL + Sbjct: 284 HLAELPGSGIIYT-LTKPGAEELTAFLRGQGHEVTTYHGGTEPAERIAAEEDLLGNRVKA 342 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694 LV + L G D P+ G V + A S + Q IGRA R V S +V+L T Sbjct: 343 LVATSALGMGFDKPDLGFVVHVGAPN-----SPIAYYQQIGRAGRAVESAEVVLLPATED 397 Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733 + I +T+ P+ V ++++V+ Sbjct: 398 RDIWRYFADTS--------------FPPEPVARQVLDVL 422 >gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748] gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748] Length = 1098 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 42/249 (16%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 R+ ++ G++GS K+F + + + +P +++ +K +++ FF N Sbjct: 24 RKGKSVIYGLSGSQKSFLLNQAFSTGLTKPVVIVVHDKD-HKEMWERDLAFFWTNI---- 78 Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283 P P TD + S+ +Q +MR A LL + VV Sbjct: 79 --------PVLSFPITDHVDFTTIARSLEDQGAQMRALA---LLAWQEPAVV-------- 119 Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I + E +Q +V + D++E+ L LV Y+R D RG F V G Sbjct: 120 IANAEEVTQYVVSPQYLKGQSLHFSLNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRG 179 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 D ++I+P + E R+ FG++I+ + F+ + Q R++E I Y + + + + Sbjct: 180 DILDIYPVNSEHPI-RIEFFGDEIDTL-RFFSVENQ--RSIEQIDSYTVTPFFLGKSDAD 235 Query: 394 -TAMKYIKE 401 T + Y+KE Sbjct: 236 CTLLSYVKE 244 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 M E L E L +R H ++ + EI+ D G +DVL+ +++ GLDIP Sbjct: 773 MGELLEEAL--PGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANT 830 Query: 654 VAILDADKEGF 664 + I DAD+ G Sbjct: 831 IIIYDADRLGL 841 >gi|199597232|ref|ZP_03210663.1| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [Lactobacillus rhamnosus HN001] gi|199591748|gb|EDY99823.1| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [Lactobacillus rhamnosus HN001] Length = 421 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL V AE L L R I ++ +R E + R G+ +VLV +L G Sbjct: 299 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 356 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697 + +P C + + AD E S ++LIQ GRA R +S V+ ++D T ++ Sbjct: 357 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 408 >gi|209542295|ref|YP_002274524.1| transcription-repair coupling factor [Gluconacetobacter diazotrophicus PAl 5] gi|209529972|gb|ACI49909.1| transcription-repair coupling factor [Gluconacetobacter diazotrophicus PAl 5] Length = 1156 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%) Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVS-CIYGI 284 + P A + P D S N I R + LLE IV+++V + + Sbjct: 56 FVAPNAEILRFPSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRV 115 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 ++ + L GDS++Q L+ LV Y R D + G F G +IFPS E Sbjct: 116 APRAAFRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPSG-E 174 Query: 345 DVAWRVSMFGNDIEEISEFYPLT 367 R+ +FG+++E I F P T Sbjct: 175 AEPVRLDLFGDEVENIRRFDPAT 197 >gi|227524|prf||1705300A ATP dependent RNA helicase Length = 604 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498 >gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] Length = 1460 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DL+ GK ++LV ++L EG+D+ C LV D K+ LR S +Q GRA + + Sbjct: 508 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKKSSK 562 Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708 VI YA DT T A+++ + R Sbjct: 563 FVIFYAEDDTATYKDWEAMEDIMKER 588 >gi|61657313|emb|CAI44233.1| primosomal protein N [Thermotoga neapolitana] gi|61657335|emb|CAI44254.1| primosomal protein N [Thermotoga neapolitana] Length = 734 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+++ +L Y ER + +E + I L G+ D+LVG ++ + D+PE Sbjct: 504 TEKIERELQRYFPERRVMRIDREVVEDVMEVEDYINRLISGEIDILVGTRMVTKSFDVPE 563 Query: 651 CGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688 GLV +LD D F LR ++Q GRA+R + IL Sbjct: 564 IGLVCVLDVDSLIFLPDFSASLRVFQLIVQVFGRASRKGTGRAIL 608 >gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341] gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341] Length = 1183 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366 EL LV Y+R + + G F G ++IF S L + R+ F ++++ + F L Sbjct: 142 ELQKKLVNMGYRRVETVDVVGEFSKRGSIVDIF-SPLSEKPIRLDFFDDELDSMRTFDEL 200 Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426 T + + +++ IY S + + ++ I +L + +L E + ++ Sbjct: 201 TQRSLEKIDSGVIYPTSDFFLTSEEKDVVVERILTKLN--------DTKLREEENYQEIS 252 Query: 427 TY---DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483 TY +E+ + TG +E++S + E ++ +Y+ +D+++F D H + +I Sbjct: 253 TYLQEKIEIYKATGDFSDLESFSNLVY-----ENTYSIADYLTDDTIIFYDNYHKILEKI 307 Query: 484 SGM 486 G+ Sbjct: 308 EGL 310 >gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sanguinis ATCC 49296] gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sanguinis ATCC 49296] Length = 525 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|189237234|ref|XP_970515.2| PREDICTED: similar to eukaryotic initiation factor 4A [Tribolium castaneum] Length = 1983 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 1842 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFR 1896 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 1897 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 1934 >gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC0288-04] gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC3059-06] gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CGSP14] gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669] gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus pneumoniae JJA] gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CGSP14] gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC0288-04] gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC3059-06] gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC 700669] gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus pneumoniae JJA] Length = 524 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLEHNKKHNINPQSVKE 727 K L+ P SV+E Sbjct: 362 MKGLK--------PASVEE 372 >gi|76609700|ref|XP_615590.2| PREDICTED: interferon induced with helicase C domain 1-like [Bos taurus] gi|297471684|ref|XP_002685384.1| PREDICTED: interferon induced with helicase C domain 1-like [Bos taurus] gi|296490601|gb|DAA32714.1| interferon induced with helicase C domain 1-like [Bos taurus] Length = 1021 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 765 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 818 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 R S +L A + + ++ R + ++ N+ P+ KI+E+ ++E Sbjct: 819 RADESTYVLVAQSGSGVVERETVNDFREKMMYKAIDRVQNMKPEEYAHKILELQMQSIME 878 Query: 740 DAATTNISIDAQ 751 T SI Q Sbjct: 879 KKMKTKRSIAKQ 890 >gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 1450 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++L+ ++L EG+D+ C LV DA +++ S IQ GR AR +S Sbjct: 467 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDA-----IKNLRSFIQRRGR-ARKEHS 520 Query: 685 KVILYADT 692 K +++ D+ Sbjct: 521 KFVMFLDS 528 >gi|322375696|ref|ZP_08050208.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300] gi|321279404|gb|EFX56445.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300] Length = 671 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVSLLHGKMKSDEKDQIMQDFKEQKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T+S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582 >gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC 6249] gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC 6249] Length = 525 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521] gi|74701966|sp|Q4P9P3|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1 gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521] Length = 932 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V +K++A L + +H ++ +RI+ + D R GK D L+ +L G Sbjct: 615 MIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRG 674 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705 LDI G+ +++ D G + + RA RN + V L + + ++LAI Sbjct: 675 LDIK--GVQTVINYDMPGQFEAYLHRVGRTARAGRNGRA-VTLVGEADRRMLKLAI---- 727 Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVID 734 +K KH I P +V + E ++ Sbjct: 728 ---KKSSAEQIKHRIIPSAVAAHMCETLE 753 >gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 12P80B1] Length = 581 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TK E L L E + RY+H ++ +R I+ D++ GK DVLV ++ G Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 +DI V D R + IGR R + V + +I + QL Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370 >gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3] Length = 551 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 340 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 399 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 400 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 444 >gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1170 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/305 (19%), Positives = 127/305 (41%), Gaps = 28/305 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS + +A +A + +V+ + +L S+ + + V F + D Sbjct: 30 QLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASDLSSLIGEDKVYTF--FAD 87 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E ++ ++ + +L + S V + + E Y Sbjct: 88 DVAAAEFIFAS---MDKAHSRLEALNFLQDNKQSGIL------ITSLVGARVLLPNPEIY 138 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ + +G+ +++ L Y++ + G F GD ++I+ D +R+ Sbjct: 139 AESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIY-EMTADYPYRL 197 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++++ I +F T + + N+E + I + A K + Sbjct: 198 EFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASKAFE---------- 247 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 LE + EQ+ Y E+ T ++ R+L+ E TL +YIP+ + Sbjct: 248 ----TFLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLSLFYAKE--WTLLDYIPKGTP 301 Query: 471 LFVDE 475 +F D+ Sbjct: 302 VFFDD 306 >gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus LMD-9] Length = 527 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ IIRD + G+ D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23] Length = 608 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 400 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 458 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 459 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 502 >gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB] Length = 604 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498 >gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex] Length = 805 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V K AE+L+ L R + V +H ++ ++R ++I + + D+LV ++ Sbjct: 547 VLIFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDILVATDVAAR 606 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLDIP V D ++ + + T I GRA Sbjct: 607 GLDIPHIRTVVNYDIARD--IDTHTHRIGRTGRAG 639 >gi|295698371|ref|YP_003603026.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola USDA] gi|291157197|gb|ADD79642.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola USDA] Length = 187 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 7/99 (7%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 I++ +H +++ ++ +II D R + +L+ ++ GLDIP+ L+ I + ++ G Sbjct: 18 IKIGSIHGKMRAEDKRKIISDFRRNQIQILISTTIVEVGLDIPDANLMVIENPERLGL-- 75 Query: 667 SKTSLIQTIGRAARNVNSK---VILYADTITKSIQLAID 702 + L Q GR RN N + ++LY+ +I K+ + ++ Sbjct: 76 --SQLHQLRGRVGRNSNQESFCILLYSSSINKAARFRLN 112 >gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus UCN34] gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus UCN34] gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1166 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/305 (19%), Positives = 127/305 (41%), Gaps = 28/305 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS + +A +A + +V+ + +L S+ + + V F + D Sbjct: 26 QLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASDLSSLIGEDKVYTF--FAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E ++ ++ + +L + S V + + E Y Sbjct: 84 DVAAAEFIFAS---MDKAHSRLEALNFLQDNKQSGIL------ITSLVGARVLLPNPEIY 134 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 ++ + +G+ +++ L Y++ + G F GD ++I+ D +R+ Sbjct: 135 AESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIY-EMTADYPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++++ I +F T + + N+E + I + A K + Sbjct: 194 EFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASKAFE---------- 243 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 LE + EQ+ Y E+ T ++ R+L+ E TL +YIP+ + Sbjct: 244 ----TFLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLSLFYAKE--WTLLDYIPKGTP 297 Query: 471 LFVDE 475 +F D+ Sbjct: 298 VFFDD 302 >gi|219123462|ref|XP_002182043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406644|gb|EEC46583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1565 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 13/112 (11%) Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 ++ +E+ + IR+ R F+VLV + EGLDI E L+ D LRS +IQ Sbjct: 692 MRQVEQQQAIREFREDTFNVLVCTCIGEEGLDIGEVDLIVNFDT-----LRSPIRMIQRT 746 Query: 676 GRAARNVNSKVI-LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726 GR R + +V+ L A+ + LA +R+ E+ L H K NP+S + Sbjct: 747 GRTGRKRDGRVVCLVAEGPEERTLLA----SRQSERNLAHALK---NPKSFR 791 >gi|169838125|ref|ZP_02871313.1| excinuclease ABC subunit B [candidate division TM7 single-cell isolate TM7a] Length = 41 Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 20/30 (66%), Positives = 24/30 (80%) Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518 GD RK L E+GFRLPS +DNRPL+FEE+ Sbjct: 1 GDRARKEVLVEHGFRLPSALDNRPLKFEEF 30 >gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO] Length = 605 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 397 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 455 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 456 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 499 >gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8] gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8] Length = 488 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR+A+D+T YL + +H + + ER ++ + + G+ +L+ ++ Sbjct: 309 KVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVAS 368 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + G V D F + I IGR R Sbjct: 369 RGLDVKDIGYVINYD-----FPNNCEDYIHRIGRTGR 400 >gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789] gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a] gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291] gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13] gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3] Length = 604 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498 >gi|74142317|dbj|BAE31920.1| unnamed protein product [Mus musculus] Length = 444 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 180 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 234 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 235 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 293 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 294 ELQVQSILEKKMKVKRSIAKQ 314 >gi|162147670|ref|YP_001602131.1| transcription-repair coupling factor [Gluconacetobacter diazotrophicus PAl 5] gi|161786247|emb|CAP55829.1| putatve transcription-repair coupling factor [Gluconacetobacter diazotrophicus PAl 5] Length = 1131 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%) Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVS-CIYGI 284 + P A + P D S N I R + LLE IV+++V + + Sbjct: 31 FVAPNAEILRFPSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRV 90 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 ++ + L GDS++Q L+ LV Y R D + G F G +IFPS E Sbjct: 91 APRAAFRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPSG-E 149 Query: 345 DVAWRVSMFGNDIEEISEFYPLT 367 R+ +FG+++E I F P T Sbjct: 150 AEPVRLDLFGDEVENIRRFDPAT 172 >gi|57640863|ref|YP_183341.1| DNA/RNA repair helicase [Thermococcus kodakarensis KOD1] gi|57159187|dbj|BAD85117.1| predicted DNA/RNA repair helicase [Thermococcus kodakarensis KOD1] Length = 461 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 34/185 (18%) Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568 W +R I + A G E + E +IR L P EI + +++ Sbjct: 232 WRRVRGEEIKIEAVVGPIIYE----VRAEDLIREGFLAKPKFEIITYESKMPSFSERYKE 287 Query: 569 --EDVY---DEINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 ED+ DE N A A++G R+L+ V + L E L + I+ ++ S+ Sbjct: 288 LYEDMIMNNDERNRAIVKKAIELARKGHRVLIDVRRIEHGKILKEMLEKEGIKAEFLSSQ 347 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R EI+ + G+ VL+ LL+EG+DIPE + + K S IQTI Sbjct: 348 --SPNRWEILEAFKSGEIPVLIS-TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTI 399 Query: 676 GRAAR 680 GRA R Sbjct: 400 GRALR 404 >gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA] gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA] Length = 1022 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 GTF V G +I++FP +L R+ FG+++EEI P TGQ I+ + + IY Sbjct: 45 GTFAVRGGTIDVFPGNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIY 97 >gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595] gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 620 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA + L+ V T+ AEDL L R ++ + +V +R +++ LR G DVL Sbjct: 239 LATTEADAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVL 298 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLD+ GLV D +E + + I GRA R Sbjct: 299 VATDVAARGLDVERIGLVVNFDIPRE--VETYVHRIGRTGRAGR 340 >gi|257096038|ref|NP_001157949.1| interferon-induced helicase C domain-containing protein 1 isoform 2 [Mus musculus] Length = 976 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 712 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 766 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 767 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 825 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 826 ELQVQSILEKKMKVKRSIAKQ 846 >gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta] gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta] Length = 793 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 558 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 618 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 661 >gi|74197309|dbj|BAC34178.2| unnamed protein product [Mus musculus] gi|74217148|dbj|BAC39257.2| unnamed protein product [Mus musculus] Length = 1393 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + E++ E L + +R M H+ K E+++++R R G + Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S LIQ +GR R ++++ Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572 >gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus] Length = 519 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TK+ + LT L + + R +H + ER +++D + G F VLV ++ Sbjct: 373 KVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATDVAA 432 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + +V D F + I IGR R Sbjct: 433 RGLDVKDIQMVINFD-----FPNNMEDYIHRIGRCGR 464 >gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720] gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720] Length = 692 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AA GL I+ T TKRMA+ L ++LY++ +H ER + + + G +LV Sbjct: 478 AADNGLTIVFTE-TKRMADYLADFLYDQGFPATAIHGNRTQYEREKALAAFKNGTAPILV 536 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 537 ATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNTGI 580 >gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 446 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V T+ AE + E LY+ I H + R +++++ R ++ VLV +L Sbjct: 254 RVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAA 313 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 G+DI GL A+++ D R+ + IGR R S V Sbjct: 314 RGIDI--AGLPAVVNYD---LPRAAADYVHRIGRTGRAGASGV 351 >gi|82915217|ref|XP_729012.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23485792|gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii] Length = 654 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 435 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTE 494 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E I R G+ DVLVG ++ +GLD P V D K+ + + IGR R Sbjct: 495 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 549 >gi|322388803|ref|ZP_08062400.1| DNA helicase RecG [Streptococcus infantis ATCC 700779] gi|321140422|gb|EFX35930.1| DNA helicase RecG [Streptococcus infantis ATCC 700779] Length = 671 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + +V +H ++K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAKVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|315656585|ref|ZP_07909472.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492540|gb|EFU82144.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 816 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 6/105 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RIL TV T+ A T ++ R+I + HS + + + + + D G+ +LV ++ Sbjct: 596 RILHTV-TQTAARLATLPIF-RDIPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVE 653 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+D+PE ++ ILDAD+ G + L Q GR R V L Sbjct: 654 VGMDVPEASMMIILDADRYGI----SQLHQLRGRIGRGSRPGVCL 694 >gi|258507889|ref|YP_003170640.1| ComF operon protein 1 [Lactobacillus rhamnosus GG] gi|257147816|emb|CAR86789.1| ComF operon protein 1 [Lactobacillus rhamnosus GG] gi|259649216|dbj|BAI41378.1| DNA/RNA helicase [Lactobacillus rhamnosus GG] Length = 421 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL V AE L L R I ++ +R E + R G+ +VLV +L G Sbjct: 299 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 356 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697 + +P C + + AD E S ++LIQ GRA R +S V+ ++D T ++ Sbjct: 357 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 408 >gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster] Length = 798 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 563 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 622 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 623 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 666 >gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 431 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V K + L E L++R I H + R II D + GK +VL+ ++ G Sbjct: 260 LVFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDFKSGKIEVLIATDIAARG 319 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LDI + +V +D RS + + IGR+ R Sbjct: 320 LDIEKLPVVINVD-----LPRSPSDYMHRIGRSGR 349 >gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276] gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii WM276] Length = 644 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A Q G IL+ V TKRMA+ L ++L R +H + ER + + G+ +LV Sbjct: 418 AEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILV 477 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 + GLDIP V + D + + T I GRA NV + + Sbjct: 478 ATAVAARGLDIPNVTHVILYDLPND--VAEYTHRIGRTGRAG-NVGTSTAFF 526 >gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1] gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1] Length = 1162 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 265 SLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 L E+ ++V+SV S + + V++ + K+G+SVE +L Y R Sbjct: 109 GLDEKKPALLVTSVPSLLQRVPPVKAVKRASYSAKVGNSVEIADLERYFAVNGYARASTV 168 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 RG F + G I++FP E+ R+ +FG+ +E I F P T + + ++ + + Sbjct: 169 SDRGEFAIRGGVIDVFPPTAEEPV-RLDLFGDTLESIRAFDPETQRSTKQLKEVSL 223 >gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii] gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii] Length = 401 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+Y I A+Q + + V ++ E L + + + ++H E++ ER E +++ R Sbjct: 255 DIYRSIK--AEQSI---IYVNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFR 309 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GKF VL+ +LL G+DI + V D + K S I IGR+ R Sbjct: 310 FGKFRVLITTDLLSRGIDIEKVNFVINYDLP-----QYKESYIHRIGRSGR 355 >gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21] gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21] Length = 1163 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 25/216 (11%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 ++++LK H Q+ G + MA + A A+ +AP+ A + SE F Sbjct: 4 LSRILKADHPLTLAQVARGA----QPLVMADLARAGTGRAVFIAPDDA-AMRSVSEAAQF 58 Query: 217 F-PHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 F P V F ++ YD P V ++ SS+ R++ ++ L Sbjct: 59 FAPELDVIEFPAWDSLPYDRASPALTVS-----AKRLSSLF----RLQTGKAKAQL---- 105 Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV ++ + + + + + + + K G + + L L KQ Y R D I +G + + Sbjct: 106 -IVTTANAVLQRVLTPFRIRESVREFKPGTEIGRDSLSLLLQKQGYSRTDTVIDKGEYAI 164 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367 G +++FPS L D A R+ FG+++E + F P T Sbjct: 165 RGSIVDVFPSGL-DEALRLDFFGDELESLRSFDPNT 199 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 15/163 (9%) Query: 557 PPVEIRSARTQVEDVYDEINLAA-----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611 PPV+ + RT V + D + A +G + + V E ++++L+E V++ Sbjct: 785 PPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEAISDWLHENVPEVKF 844 Query: 612 M--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 + H ++ E E + GK+DVL+ ++ GLD+P + I AD G Sbjct: 845 VAAHGQMGAGEIEERMSAFYEGKYDVLLATTIVESGLDLPSANTIIIHRADIFGL----A 900 Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 L Q GR R SK+ YA +T +A+ E +R K L Sbjct: 901 QLYQLRGRVGR---SKLRAYA-YLTYEKDVALSEVAEKRLKVL 939 >gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261] gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261] Length = 521 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118] Length = 604 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ GL L+ V TKRMA+ LT++L +N R +H + ER + R G +LV Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ + Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498 >gi|51329784|gb|AAH80200.1| Ifih1 protein [Mus musculus] Length = 976 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 712 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 766 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 767 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 825 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 826 ELQVQSILEKKMKVKRSIAKQ 846 >gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana) tropicalis] gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase [Xenopus (Silurana) tropicalis] Length = 755 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +H +++ ER I++ R G F+VLV N+ GLDIPE LV + A KE + Sbjct: 461 LHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEA-----DAY 515 Query: 672 IQTIGRAAR 680 + GR R Sbjct: 516 VHRSGRTGR 524 >gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 518 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis] Length = 758 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 +H +++ ER I++ R G F+VLV N+ GLDIPE LV + A KE + Sbjct: 461 LHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEA-----DAY 515 Query: 672 IQTIGRAAR 680 + GR R Sbjct: 516 VHRSGRTGR 524 >gi|157106194|ref|XP_001649211.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108879905|gb|EAT44130.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 625 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 559 VEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 V+ R+ + D+ I N ++ L+ V TK+ A+ L E+LY N V +H + Sbjct: 401 VDENDKRSHLLDLLSNIKAQNEGDEKDCLTLIFVETKKSADSLEEFLYHYNHPVTSIHGD 460 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSL 671 ER + ++ R G+ VLV + GLDIP V D A+ E ++ +T Sbjct: 461 RTQKEREDALKCFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEIEEYVHRIGRTGR 520 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQ 698 + +G A N K A+ + + +Q Sbjct: 521 MGNLGIATSFFNDKNRNVANGLVRLLQ 547 >gi|73963567|ref|XP_537429.2| PREDICTED: similar to CG7922-PA [Canis familiaris] Length = 2047 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + +++ E L + +R M H+ K++ E++E+++ R G + Sbjct: 478 RVMIFSSFRDSVQEIAEMLLQHQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 537 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S L+Q +GR R ++++ Sbjct: 538 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRKGRIVV 587 >gi|291565766|dbj|BAI88038.1| primosomal protein N' [Arthrospira platensis NIES-39] Length = 831 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%) Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+A++LT E R IR + K RI ++ + D+LVG +L +GLD+ Sbjct: 594 TQRVAQELTRLFPELRFIRFDSDTTRTKNAHRI-LLTQFANREADLLVGTQMLTKGLDLD 652 Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 GLV I+ AD G L R+ +L+Q GRA R N +VIL T + Sbjct: 653 SVGLVGIVSAD--GLLHLSDYRANERAFQTLLQVAGRAGRGNDPGQVILQTYTPEHPVVE 710 Query: 700 AIDETTRRR--EKQLEHNKKHNINP 722 A+ E +L+H + N P Sbjct: 711 AVRNHAYDSFVETELQHRSELNYPP 735 >gi|132252411|gb|ABO33314.1| melanoma differentiation-associated protein 5 [Mus musculus] gi|158699346|gb|ABW76702.1| melanoma differentiation-associated protein 5 [Mus musculus] Length = 1025 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895 >gi|70948515|ref|XP_743756.1| RNA helicase-1 [Plasmodium chabaudi chabaudi] gi|56523410|emb|CAH76963.1| RNA helicase-1, putative [Plasmodium chabaudi chabaudi] Length = 633 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 414 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTE 473 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E I R G+ DVLVG ++ +GLD P V D K+ + + IGR R Sbjct: 474 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 528 >gi|117928787|ref|YP_873338.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B] gi|117649250|gb|ABK53352.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B] Length = 741 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 R +R+ +H + + ++ D G+ DVLV ++ G+D+P ++ ILDAD+ G Sbjct: 557 RGLRIGTLHGRMDAAAKDAVLADFSAGRLDVLVATTVVEVGVDVPNASMMVILDADRFGV 616 Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688 + L Q GR R V L Sbjct: 617 ----SQLHQLRGRIGRAGQRAVCL 636 >gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis mellifera] Length = 701 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L EYL++ V +H + ER + +R R GK +LV + G Sbjct: 488 LVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQREREDALRRFRAGKAPILVATAVAARG 547 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687 LDIP V D D E ++ +T + +G A N+K I Sbjct: 548 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNNKNI 593 >gi|260892053|ref|YP_003238150.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4] gi|260864194|gb|ACX51300.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4] Length = 685 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 ++AE+L ++ E ++ +H +K E+ ++ R G+ +LV +++ G+D+P Sbjct: 493 KLAEELKKFFPE--FQIGLLHGRLKLEEKERVMAAFRSGEIKLLVTTSVVEVGVDVPNAT 550 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709 ++ I DAD+ G L Q GR R + S IL AD +T Q + T R+ Sbjct: 551 VMVIYDADRFGL----AQLHQLRGRVGRSDKPSYCILVADKVTPEAQARLKAFTNLRD 604 >gi|227524866|ref|ZP_03954915.1| possible ATP-dependent DNA helicase/translocase [Lactobacillus hilgardii ATCC 8290] gi|227087972|gb|EEI23284.1| possible ATP-dependent DNA helicase/translocase [Lactobacillus hilgardii ATCC 8290] Length = 142 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 IN +Q R LL V + ++ L + NI Y+ +R+E + +R D Sbjct: 2 INRLVKQKQRFLLFVPRIKDLTLVSNALEKANINCTYLTVYSADPQRLEKVTAMRSQSVD 61 Query: 635 VLVGINLLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYA 690 L+ +L G+ P G+ V +L AD E F S ++L+Q GR RN +VILY Sbjct: 62 FLITTTILERGVTFP--GIDVMVLKADDEVF--STSALVQIAGRVGRNSARPTGQVILYC 117 Query: 691 DTITKSIQ 698 +T +K+I+ Sbjct: 118 ETKSKTIK 125 >gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia] gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia] Length = 797 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 562 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 621 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 622 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 665 >gi|148704700|gb|EDL36647.1| mCG118968 [Mus musculus] Length = 1370 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + E++ E L + +R M H+ K E+++++R R G + Sbjct: 431 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 490 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S LIQ +GR R ++++ Sbjct: 491 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 540 >gi|148695044|gb|EDL26991.1| interferon induced with helicase C domain 1 [Mus musculus] Length = 1025 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895 >gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster] gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein belle gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster] Length = 798 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 563 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 622 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 623 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 666 >gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii] Length = 816 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 + D +N + L L+ V TK+ A+ L +LY +H + ER E +R+ R Sbjct: 583 LLDLLNASGPDSL-TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRS 641 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 GK VLV + GLDIP V D +D E ++ +T + +G A N K Sbjct: 642 GKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 700 >gi|332285001|ref|YP_004416912.1| transcription-repair coupling factor [Pusillimonas sp. T7-7] gi|330428954|gb|AEC20288.1| transcription-repair coupling factor [Pusillimonas sp. T7-7] Length = 1158 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 21/212 (9%) Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233 GSG + +A + A ++ +V+ + + A +L E F P V + YD + Sbjct: 38 GSGDAWWLADLARASRKTVVVLCADPLAAQRLADEVLLFAPDLRVRQLPDWETLPYDGFS 97 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 P + I+E++ R H+ + E+ D + V + +Y + E + Sbjct: 98 PH------------QDLISERL-RTLHALMQ---EQVDVLTVPITTALYRLAPPEFLAAY 141 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 + GD +++ L L + Y G F + G I++FP + +R+ +F Sbjct: 142 TFAFRQGDKLDEDGLRKQLTRANYSHVTQVTAPGEFCIRGGLIDLFPMG-SALPYRLDLF 200 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 ++IE I F T + + V+ +++ + Sbjct: 201 DDEIESIRSFDIDTQRSLYPVKDVQLLPGREF 232 >gi|68488833|ref|XP_711763.1| hypothetical protein CaO19.10315 [Candida albicans SC5314] gi|68488878|ref|XP_711739.1| hypothetical protein CaO19.2797 [Candida albicans SC5314] gi|46433061|gb|EAK92517.1| hypothetical protein CaO19.2797 [Candida albicans SC5314] gi|46433086|gb|EAK92541.1| hypothetical protein CaO19.10315 [Candida albicans SC5314] Length = 623 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ + ++ L ++ + RY+ SE ER I+ D + GKF VL + + EG Sbjct: 278 LIFCINVEHCREVCALLQKQGVDARYVISETSNSERKTIVADFKQGKFPVLCNVTVFTEG 337 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 DIP + + K SK +IQ IGR R Sbjct: 338 TDIPNIDSIILARPTK-----SKPLMIQMIGRGLR 367 >gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 712 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+ AE++ L E+ I + +V ER +I+ LR G DVLV ++ GLD+ Sbjct: 300 TRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATDVAARGLDVDR 359 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLV D +E + + IGR R Sbjct: 360 IGLVVNFDIPRE-----AEAYVHRIGRTGR 384 >gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus DSM 14838] gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus DSM 14838] Length = 435 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++T+ L + V MHS+++ +R E++ + + G+ ++L Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRINIL 298 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum] Length = 405 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + L E L E N V MH +++ ER I+++ R Sbjct: 264 DLYDTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFR 318 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G +L+ ++ GLDIP+ LV D ++ I IGR+ R Sbjct: 319 SGTSRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGR 364 >gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus DSM 12680] gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus DSM 12680] Length = 1081 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/212 (18%), Positives = 94/212 (44%), Gaps = 19/212 (8%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 ++ G+ GS ++F + + + + + P + A L+ E + F +AV + Sbjct: 24 MISGLAGSARSFFLYLLATRTEDTLVCLVPLEEQAYDLHRELRGFLGPDAVCLY------ 77 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVSSVSCIYGIGSV 287 P D E N RM +T S L ++ ++ ++ S + + S Sbjct: 78 -------PSQDLVFWHEGREN-SFSRMTRLSTLSRLASGHQQVKVLIATAGSLVTKVLSP 129 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + + + + L + + ++ + LV+ Y+R + G+F + G ++++P + Sbjct: 130 QEFRRQTLTLAVKQEINLEKTMRRLVELGYQRCQVVTDPGSFGLRGGVLDVYPPDQTE-P 188 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 +R+ ++ ++IE I F PLT + + + ++ I Sbjct: 189 FRLELWADEIESIRSFDPLTQRSGKKLTSVSI 220 >gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814] gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814] Length = 1152 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 10/118 (8%) Query: 598 LTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 L +L E+ V ++ H ++ + + +I+ D GK DVL+ ++ GLDIP + Sbjct: 830 LERFLREQVPEVSFLSAHGQMASGQLEDIMNDFYDGKADVLLATTIVESGLDIPRANTIV 889 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 I ADK G L Q GR R SK+ YA TK + + ET +R K L+ Sbjct: 890 IHRADKFGL----AQLYQLRGRVGR---SKLRAYAYMTTKK-DMVLSETAEKRLKVLQ 939 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 28/177 (15%) Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSI 251 + +A ++ A Q+ S K F PH A+ F ++ YD P A+ Sbjct: 39 GVYVARDERQALQVLSIAKFFQPHMAMINFPAWDCLPYDRVSPTAH-------------- 84 Query: 252 NEQIDRMRHSATRSLLERND----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 I MR SA L R+ +V ++ + + + V ++ IG V+Q+ Sbjct: 85 ---ISAMRCSALARLSHRDPKEKILVVTTAHALVQRVAPVTKMAEASFAAGIGADVDQQA 141 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363 L L Y R DI G + + G ++I+ P +E V R+ FG+++E I F Sbjct: 142 LQDYLTINGYTRTDIVREPGEYAIRGGIVDIYPPDRIEPV--RLDFFGDNLESIRSF 196 >gi|94268418|ref|ZP_01291170.1| Helicase-like:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93451611|gb|EAT02408.1| Helicase-like:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 998 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 E NL A +G+ +++ + A+ + E +R I S V + E ++ DLR G+ Sbjct: 551 ESNLEAIKGVGFCVSI---KHAQYMAEMFNQRGIAAAAFVSGVDSAECSAMLADLRNGRL 607 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 L ++ L EG+D+PE +V L + S T +Q +GR R+ K L Sbjct: 608 SFLFTVDKLSEGVDVPEMNVVLFLRPTE-----SLTVFLQQLGRGLRHAPGKDCL 657 >gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 1468 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DL+ GK ++LV ++L EG+D+ C LV D K+ LR S +Q GRA + + Sbjct: 495 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKKSSK 549 Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708 VI YA DT T A+++ + R Sbjct: 550 FVIFYAEDDTATYKDWEAMEDIMKER 575 >gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus] Length = 2021 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + E++ E L + +R M H+ K E+++++R R G + Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S LIQ +GR R ++++ Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572 >gi|121726001|ref|ZP_01679300.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V52] gi|121631483|gb|EAX63853.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V52] Length = 979 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 522 PTE-----SKILFLQQLGRGLR 538 >gi|20385628|gb|AAM21359.1| melanoma differentiation associated gene 5-like protein [Mus musculus] Length = 1025 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895 >gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus] gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein FACM; AltName: Full=ATP-dependent RNA helicase FANCM Length = 2021 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + E++ E L + +R M H+ K E+++++R R G + Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S LIQ +GR R ++++ Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572 >gi|147675167|ref|YP_001216293.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395] gi|146317050|gb|ABQ21589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae O395] gi|227012636|gb|ACP08846.1| helicase-related protein [Vibrio cholerae O395] Length = 979 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 522 PTE-----SKILFLQQLGRGLR 538 >gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta] gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta] Length = 385 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 V ++Y +I + ++ V T+R E L + + V Y+H E+ ++R +++D Sbjct: 242 VIEIYSKIKITQS-----IIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKD 296 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R G F +L+ +L+ G+DI + LV D K K I IGR+ R Sbjct: 297 FRSGLFRILISTDLVSRGIDIQQVCLVINYDLPK-----LKEVYIHRIGRSGR 344 >gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris gallopavo] Length = 369 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 228 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 282 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 283 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 328 >gi|156095288|ref|XP_001613679.1| RNA helicase-1 [Plasmodium vivax SaI-1] gi|148802553|gb|EDL43952.1| RNA helicase-1, putative [Plasmodium vivax] Length = 667 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E+ L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 448 EVEYVKEELKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTE 507 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I R GK D+LVG ++ +GLD P V D K+ + + IGR R Sbjct: 508 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 562 >gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var. neoformans JEC21] gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var. neoformans B-3501A] gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 637 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A Q G IL+ V TKRMA+ L ++L R +H + ER + + G+ +LV Sbjct: 418 AEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILV 477 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 + GLDIP V + D + + T I GRA NV + + Sbjct: 478 ATAVAARGLDIPNVTHVILYDLPND--VAEYTHRIGRTGRAG-NVGTSTAFF 526 >gi|294054801|ref|YP_003548459.1| primosomal protein N' [Coraliomargarita akajimensis DSM 45221] gi|293614134|gb|ADE54289.1| primosomal protein N' [Coraliomargarita akajimensis DSM 45221] Length = 755 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 24/128 (18%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK----EGFL---RSKTSLIQTI 675 +I+ D R GK D+LVG ++ +GLD P LV ++DAD E F R+ ++Q Sbjct: 550 KILGDFRAGKIDLLVGTQMIAKGLDFPNVTLVGLVDADMSLHVEDFRAAERTFQLIVQVS 609 Query: 676 GRAARNVNS-KVILYADTI-TKSIQLA---------IDETTRRRE---KQLEHNKKHNI- 720 GRA R + +VI+ T IQ A ++E +RRE H +H Sbjct: 610 GRAGRGDRAGEVIIQTSTPHAPPIQFARKSDFDGFQLEELEQRREFDYPPFRHLIRHVFR 669 Query: 721 --NPQSVK 726 NPQ V+ Sbjct: 670 GRNPQKVE 677 >gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia pastoris GS115] gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia pastoris GS115] gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae FAL1 (YDR021W) involved in rRNA processing [Pichia pastoris CBS 7435] Length = 396 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ + LTE+L + N V MH ++K +R I+ + R Sbjct: 255 DLYDSLTVT-----QAVIFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFR 309 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LG VL+ ++ G+D+ + LV D +K + I IGR+ R Sbjct: 310 LGNSRVLISTDVWARGIDVQQVSLVINYDIP-----FAKENYIHRIGRSGR 355 >gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas uenonis 60-3] gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas uenonis 60-3] Length = 436 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%) Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-- 583 ++ SAT L+ + I+V+ ++ + PP +S YD L + L Sbjct: 184 VMFSATMPKEILKLSESILVDPVLVELAVAKPP---KSIMQTAYICYDAQKLPIIRSLFA 240 Query: 584 -------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 R ++ TK L + L + V MHS++ R E++RD R+G+ VL Sbjct: 241 NPESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVL 300 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 V +++ G+DI + +V + D E + + IGR AR + K Sbjct: 301 VATDIVARGIDIDDIAVVINYEVPHDFEDY-------VHRIGRTARGADGK 344 >gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis SK115] Length = 1167 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I+N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIQNIESILI 225 Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 ++L Q GR R S I YA I + ++ + + +R E Sbjct: 909 STLYQLRGRVGR---SNRIAYAYLIYRPDKILTEVSEKRLE 946 >gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus ATCC 33331] Length = 1176 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 22/238 (9%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+++ +K + + L + + F +A + R + + A L + + Sbjct: 15 ALSEAVKAASDGHRAHVDLVGPPAARPFAVAALAREAGRTVLAVTATGREAEDLAAALRT 74 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P + V F S+ + E PR+DT + + + R+ H +VV Sbjct: 75 LLPPDTVAEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRPDDPETGPVKVVV 129 Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + V + G+G +E V L G + + E++ +L Y R ++ RG F Sbjct: 130 APVRSVLQPQVKGLGDLEP-----VALSSGRTADLGEVVDALAAAAYARVELVEKRGEFA 184 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ RV +G+D+EEI F KI + ++++ A+ + P Sbjct: 185 VRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF------KIADQRSLEVAAHGLWAPP 235 >gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei] Length = 703 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +IL+ V KR+A+ + YL E+ R MH + +R + + + R G ++LV + Sbjct: 518 KILVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSEFRTGVHNILVATAVTA 577 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691 GLDI G+V D K+ + IGR R N + Y D Sbjct: 578 RGLDIKGIGVVVNYDLPKD-----IDEYVHRIGRTGRLGNRGLSISFYDD 622 >gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans SRS30216] gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans SRS30216] Length = 1193 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 17/196 (8%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250 A +RP +V+ + + + + P + V F ++ + E PR+DT ++ + Sbjct: 48 AAERPLLVVTATGRECEDMATWLRCYLPADQVAEFPAW-ETLPHERLSPRSDTVAQRLAV 106 Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQ 305 + R+ H + +VV+ + + G+ +E V+L+ GD Sbjct: 107 LR----RLAHPSPDDPTTGEVRVVVAPIRAVLQPLVKGLADLEP-----VRLRAGDDAGL 157 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 + + +L Y R D+ RG F V G +++FP RV FG+++EE+ F Sbjct: 158 ETAVEALAAAAYSRVDMVERRGEFAVRGGILDVFPPTRPH-PLRVEFFGDEVEEVRSFS- 215 Query: 366 LTGQKIRNVETIKIYA 381 + Q+ VE ++A Sbjct: 216 VADQRTLEVEPDGVWA 231 >gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 417 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 +K+ +DL L + V MHS+++ +R ++ D + GK D+LV +++ G+DI + Sbjct: 253 SKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTDILVATDIVARGIDIDD 312 Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689 GLV D D E + I IGR AR N + I + Sbjct: 313 IGLVINYDVPHDPEDY-------IHRIGRTARANADGVAITF 347 >gi|197246579|gb|AAI68680.1| Ifih1 protein [Rattus norvegicus] Length = 775 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 511 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 565 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 566 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 624 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 625 ELQVQSILEKKMKVKRSIARQ 645 >gi|262168757|ref|ZP_06036452.1| helicase-related protein [Vibrio cholerae RC27] gi|262022875|gb|EEY41581.1| helicase-related protein [Vibrio cholerae RC27] Length = 978 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 404 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 461 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 462 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 520 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 521 PTE-----SKILFLQQLGRGLR 537 >gi|257096036|ref|NP_082111.2| interferon-induced helicase C domain-containing protein 1 isoform 1 [Mus musculus] gi|62510931|sp|Q8R5F7|IFIH1_MOUSE RecName: Full=Interferon-induced helicase C domain-containing protein 1; AltName: Full=Helicase with 2 CARD domains; Short=Helicard; AltName: Full=Interferon induced with helicase C domain protein 1; AltName: Full=Melanoma differentiation-associated protein 5; Short=MDA-5 gi|18698981|gb|AAL77205.1| HELICARD [Mus musculus] gi|123235746|emb|CAM21790.1| interferon induced with helicase C domain 1 [Mus musculus] gi|132252386|gb|ABO33313.1| melanoma differentiation-associated protein 5 [Mus musculus] Length = 1025 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895 >gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis M01-240149] gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis NZ-05/33] Length = 1227 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 RRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT N A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 918 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 974 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 975 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1010 >gi|304391135|ref|ZP_07373087.1| transcription-repair coupling factor [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326018|gb|EFL93264.1| transcription-repair coupling factor [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1165 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 14/172 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+AP+ A QL E + VE F + + E PRTDT + +++ Sbjct: 47 ERLTVVLAPSTRAATQLARELGAY--TAGVELFPDW-ETLPHERLSPRTDTMARRIWALH 103 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 R+ H + + V ++++ + + Y VQ +GD ++ + + L Sbjct: 104 ----RVTHPHPQDAVHFLVMPVRAALAPVNA--HIADYPLFTVQ--VGDPYDRDTMAADL 155 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363 ++ Y+R D+ RG F V G +++F P+ V R+ +FG++++ I F Sbjct: 156 LRLGYERVDMVGARGQFAVRGGLLDVFSPTSAHPV--RIELFGDEVDTIRAF 205 >gi|74225485|dbj|BAE31652.1| unnamed protein product [Mus musculus] Length = 1025 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895 >gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum] Length = 2876 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%) Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T+++ II +LG +LV N+L EGLD+ EC LV ++D S S+IQ GR Sbjct: 787 TIDQHRIIEQFKLGHCKLLVATNVLEEGLDVSECNLVICFESD-----FSMRSMIQRRGR 841 Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 AR+ N + + + QL I + +RE ++ Sbjct: 842 -ARSENGNFMY----LREEKQLDIQQDFAKREAEM 871 >gi|309798694|ref|ZP_07692959.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302] gi|308117637|gb|EFO55048.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302] Length = 392 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + E+ +V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 236 LSEELTAHFAEKA-KVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 294 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 295 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 334 >gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca] Length = 404 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 268 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 322 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 323 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 368 >gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] Length = 408 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K ++L L V MHS+++ +R E++++ + G D+LV +++ Sbjct: 229 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 288 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI + LV D D E + + IGR AR N + Sbjct: 289 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 325 >gi|4490561|emb|CAB38638.1| RNA helicase [Plasmodium cynomolgi] Length = 182 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ +TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 86 DLYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 140 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ ++ GLD+P+ L+ Sbjct: 141 SGASRVLISTDVWARGLDVPQVSLI 165 >gi|15640830|ref|NP_230461.1| helicase-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585747|ref|ZP_01675542.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae 2740-80] gi|153819998|ref|ZP_01972665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae NCTC 8457] gi|153821360|ref|ZP_01974027.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae B33] gi|227080991|ref|YP_002809542.1| helicase-related protein [Vibrio cholerae M66-2] gi|298499058|ref|ZP_07008865.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757] gi|9655262|gb|AAF93976.1| helicase-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550110|gb|EAX60126.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae 2740-80] gi|126509463|gb|EAZ72057.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae NCTC 8457] gi|126521070|gb|EAZ78293.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae B33] gi|227008879|gb|ACP05091.1| helicase-related protein [Vibrio cholerae M66-2] gi|297543391|gb|EFH79441.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757] Length = 979 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 522 PTE-----SKILFLQQLGRGLR 538 >gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis BB-12] Length = 1248 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249 A ++P +++ P+ A L + ++++ + E + ++ E PR DT + Sbjct: 129 ADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHERLSPRADTVANR-- 186 Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDS 302 E R+ H + S + I+V V + GIG V+ ++Q G+ Sbjct: 187 --METFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ-------GEE 237 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEIS 361 + ++ + LV+ Y R D+ + RG F V G I++F P+ V R+ FG++I+ I Sbjct: 238 ITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPV--RIEFFGDEIDTIR 295 Query: 362 EFYP----LTGQKIRNV 374 F+ G+ IR+V Sbjct: 296 RFHSSDQRTYGEPIRSV 312 >gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii] Length = 771 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 + D +N + L L+ V TK+ A+ L +LY +H + ER E +R+ R Sbjct: 538 LLDLLNASGPDSL-TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRS 596 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 GK VLV + GLDIP V D +D E ++ +T + +G A N K Sbjct: 597 GKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 655 >gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25] gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25] Length = 1153 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 61/298 (20%), Positives = 124/298 (41%), Gaps = 38/298 (12%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L + G+ +A++ + ++++ P+ +A +L +E + F + VS + + Sbjct: 21 LGNLPGAALPLAIAELAKQHSSHSLLIVPDPQIALKLQAEIEQF-----TDQTVSLFPDW 75 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 + Y D + + I+E+I R+ + +RN +V + + + Q Sbjct: 76 ETLPY----DNFSPHQEIISERIARLYQLPS----QRNGITIVPVSTVLQRQSPRDFLLQ 127 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + +K GD + ++L L Y+ D G + G +++FP +D +R+ Sbjct: 128 HTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSDD-PYRIDF 186 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 F ++I+ I F P + I +++ I++ + PT A++ + + + Sbjct: 187 FDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ------ 236 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSC-QSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 EA+R + I M T G+ IE + TLFEY+PEDS Sbjct: 237 ----FEARREPESIY----MQVTKGTWPPGIEYWQPLFFDHT-----ETLFEYLPEDS 281 Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ AEDL + + E I V + + LERI + D +F+VLV ++ G+D+P Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + AD G L Q GR R+ Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909 >gi|315301106|ref|ZP_07872400.1| transcription-repair-coupling factor [Listeria ivanovii FSL F6-596] gi|313630527|gb|EFR98366.1| transcription-repair-coupling factor [Listeria ivanovii FSL F6-596] Length = 470 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 64/321 (19%), Positives = 135/321 (42%), Gaps = 25/321 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNALDGKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + + + P + + S + ++ R A L+ IV+ Sbjct: 74 MDSDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ + L L+ Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIIEGEEIDPEVLRQKLLTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQNYYPDI 239 Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 +K +++++ L EL EKE + + LE+ + S + + +Y+ P Sbjct: 240 VKRLEKKMMFTLNELKEKEDKXXXXENLEEDLE-------MLRSGVKPDMFFKYIGLAYP 292 Query: 455 GEPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 293 D--PASLFDYFPKNTAILLDE 311 >gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis alpha710] Length = 1227 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 RRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT N A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227 Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 918 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 974 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 975 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1010 >gi|296875899|ref|ZP_06899960.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912] gi|296433140|gb|EFH18926.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912] Length = 671 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+L + +R R+ +H ++K+ E+ I++ + + DVLV ++ G+++P + Sbjct: 484 LQEELEAFFGQRA-RISLLHGKMKSEEKDAIMQAFKEHQVDVLVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R N S IL A+ T S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGNKQSYAILVANPKTDS 582 >gi|229505575|ref|ZP_04395085.1| helicase-related protein [Vibrio cholerae BX 330286] gi|229510753|ref|ZP_04400232.1| helicase-related protein [Vibrio cholerae B33] gi|229517874|ref|ZP_04407318.1| helicase-related protein [Vibrio cholerae RC9] gi|229608593|ref|YP_002879241.1| helicase-related protein [Vibrio cholerae MJ-1236] gi|254847949|ref|ZP_05237299.1| ATP-dependent RNA helicase [Vibrio cholerae MO10] gi|255744613|ref|ZP_05418564.1| helicase-related protein [Vibrio cholera CIRS 101] gi|262161255|ref|ZP_06030366.1| helicase-related protein [Vibrio cholerae INDRE 91/1] gi|229344589|gb|EEO09563.1| helicase-related protein [Vibrio cholerae RC9] gi|229350718|gb|EEO15659.1| helicase-related protein [Vibrio cholerae B33] gi|229357798|gb|EEO22715.1| helicase-related protein [Vibrio cholerae BX 330286] gi|229371248|gb|ACQ61671.1| helicase-related protein [Vibrio cholerae MJ-1236] gi|254843654|gb|EET22068.1| ATP-dependent RNA helicase [Vibrio cholerae MO10] gi|255737644|gb|EET93038.1| helicase-related protein [Vibrio cholera CIRS 101] gi|262029005|gb|EEY47658.1| helicase-related protein [Vibrio cholerae INDRE 91/1] Length = 978 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 404 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 461 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 462 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 520 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 521 PTE-----SKILFLQQLGRGLR 537 >gi|157822253|ref|NP_001102669.1| interferon-induced helicase C domain-containing protein 1 [Rattus norvegicus] gi|149022117|gb|EDL79011.1| similar to HELICARD (predicted) [Rattus norvegicus] Length = 1027 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SEVK + E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ + Sbjct: 763 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 817 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 ++Q GR AR S +L + + + I R + N+ N+ P+ KI+ Sbjct: 818 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 876 Query: 731 EVIDPILLEDAATTNISIDAQ 751 E+ +LE SI Q Sbjct: 877 ELQVQSILEKKMKVKRSIARQ 897 >gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis carolinensis] Length = 420 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 269 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 369 >gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321] gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321] Length = 524 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|291531663|emb|CBK97248.1| transcription-repair coupling factor [Eubacterium siraeum 70/3] Length = 1171 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 15/218 (6%) Query: 164 IHSREKVQLLL-GVTGSGKT-FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 I S E V LL+ G++ K F A E + P +V+ ++ AA+L + A Sbjct: 21 ILSDEPVPLLVTGLSHIHKAHFLAALCYEKLPSPVLVITESEASAAKLTEDINTMCGDTA 80 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 F P + + DT + + ++I+ + + +L + I+ SS + + Sbjct: 81 AYQF--------PASDLTLADTEAQSQEYEYKRIETL----SAALSGKARLIISSSEAAV 128 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + V LK GD ++ EL +LV Y R D+ +G F G +I+P Sbjct: 129 QLTVPKDVLEKHTVTLKAGDEIKLDELAKTLVSAGYTRCDMIEGKGQFSFRGSLADIYPV 188 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D R+ ++G++I+ ++ F T ++I V+++ I Sbjct: 189 S-SDYPVRIELWGDEIDTVASFDLDTQRRIDTVKSVSI 225 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A D+ + E NI + H + E +++ R L G+ DVLV L+ G+D+P C + Sbjct: 842 AADIHSMVPEANIGI--AHGRMSEEELLDVWRRLIEGEIDVLVCTTLIETGVDVPNCNTL 899 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681 I +AD G L Q GR R Sbjct: 900 IIENADCMGL----AQLHQLRGRVGRT 922 >gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans] gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans] Length = 784 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 549 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 608 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 609 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 652 >gi|221056789|ref|XP_002259532.1| RNA helicase-1 [Plasmodium knowlesi strain H] gi|193809604|emb|CAQ40305.1| RNA helicase-1, putative [Plasmodium knowlesi strain H] Length = 669 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E+ L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 450 EVEYVKEELKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTE 509 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I R GK D+LVG ++ +GLD P V D K+ + + IGR R Sbjct: 510 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 564 >gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564] gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564] Length = 523 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1161 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 21/235 (8%) Query: 174 LGVTG--SGKTFTMA-KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 +GV G G+ MA ++ +++P +++AP+ + A ++Y + N + D Sbjct: 28 IGVYGITDGQIGHMAFSILSEIKKPILIIAPDNLKARKIYEDLLNLGIKDC--------D 79 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVES 289 Y P+ + ++ S + ++R A ++L + RN +V ++ + I E Sbjct: 80 LY------PKREIFLYDRDSKSLDNIKIRIRAMQNLAMNRNRVLVATTEALRDKIADREV 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + I+ + D ++ K L +L+ Y+R+ G F + G I+I+ +R Sbjct: 134 FKKYILNITCSDELDIKLLEKNLITMGYERRSQVEGVGQFAIRGAIIDIYTPI---SPYR 190 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 + +F +++ I F T + I N+ ++I S ++ T +K + ELK Sbjct: 191 IELFDVEVDSIRSFDIATQRSIENLTDVEIGPVSDFLLLDEYRQTILKNLNAELK 245 >gi|222153462|ref|YP_002562639.1| helicase [Streptococcus uberis 0140J] gi|222114275|emb|CAR42899.1| Putative helicase [Streptococcus uberis 0140J] Length = 955 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%) Query: 545 VEQIIRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTE 600 V II L+D + + + ++ + D++N G +R L+ +++ A +L+ Sbjct: 407 VTDIIIDGELIDENSDFSTLVSEERIRHILDKVNYYGYDGEKVRGLIFCSSRKEAVELSH 466 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 R ++ + + + + R E+I DL G D ++ +++ EG+DIP V +L Sbjct: 467 QFNARGLKTKSLTGDDPQVVREEVITDLESGLLDYILTVDIFNEGIDIPSVNQVVMLRN- 525 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK 685 +S IQ +GR R +SK Sbjct: 526 ----TQSSIVFIQQLGRGLRKHSSK 546 >gi|221112031|ref|XP_002166522.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III [Hydra magnipapillata] Length = 509 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 368 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRESNFTVVSMHGDMPQKERDSIMKEFR 422 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ LV D ++ I IGR+ R Sbjct: 423 SGSSRVLISTDVWSRGLDVPQVSLVINYDLPN-----NRELYIHRIGRSGR 468 >gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC 29083] gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC 29083] Length = 1190 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 16/213 (7%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ + ++ + L + + F +A + RP + + A L + ++ Sbjct: 29 ALAEAITAAQDGNRMHVDLVGPPAARPFAIAALAREAGRPVLAVTATGREAEDLAAALRS 88 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P V + S+ + E PR+DT + + + R+ H +VV Sbjct: 89 LLPSEGVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVV 143 Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + V + G+G +E V L+ G + + ++ +L Y R ++ RG F Sbjct: 144 APVRSVLQPQVKGLGDLEP-----VALRTGQTADLNAIVEALAAAAYARVELVEKRGEFA 198 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 V G +++FP E+ RV +G+D+EEI F Sbjct: 199 VRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF 230 >gi|328466535|gb|EGF37675.1| ComF operon protein 1 [Lactobacillus rhamnosus MTCC 5462] Length = 316 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R E + R G+ +VLV +L G+ +P C + + AD E S ++LIQ GRA Sbjct: 226 QRAEKVTAFRQGQLEVLVTTTILERGVTVPRCAVAVLAAADPEF---SASALIQIAGRAG 282 Query: 680 RNVNS---KVILYADTITKSIQLA 700 R +S V+ ++D T ++ A Sbjct: 283 RAADSPDDPVVFFSDRYTLAMLAA 306 >gi|307707070|ref|ZP_07643867.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321] gi|307617596|gb|EFN96766.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321] Length = 671 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKEKKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 + I+DAD+ G + L Q GR R S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582 >gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase) [Eubacterium eligens ATCC 27750] gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase) [Eubacterium eligens ATCC 27750] Length = 1206 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/205 (21%), Positives = 97/205 (47%), Gaps = 16/205 (7%) Query: 278 VSCIYGIGS----VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 V+ I GI V+ + + ++ LK GD ++ +++ L ++R + +G F + G Sbjct: 138 VTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAKGQFAIRG 197 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 I+IF S+ ++ R+ ++ ++I+ I F + + I N ++ ++ + ++ + Sbjct: 198 GIIDIF-SYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFLFTEDEIE 256 Query: 394 TAMKYIKEEL--KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 ++ I+ E +M+L +K R E + + TG +YS+++ Sbjct: 257 QGIEKIRHEKDEQMKLFGADKRKRTKEQIEAGNHLNRMFDDALRTG------DYSKFIY- 309 Query: 452 RNPGEPPPTLFEYIPE-DSLLFVDE 475 + +L EY P+ D+L+ VDE Sbjct: 310 -TFADRVSSLAEYFPKGDTLIVVDE 333 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V Y H ++ E +I+ D G+ DVLV ++ G+DI C + I DAD+ G Sbjct: 886 VAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNCNTMIIEDADRFGL---- 941 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 942 SQLYQLRGRVGRS 954 >gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] Length = 610 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 IL+ V TK M +L E L R ++ ++ +R + L+ G +++ ++ Sbjct: 266 ILIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIVIATDVAAR 325 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D +D E ++ I GRA R+ + IL+ K++ AI+ Sbjct: 326 GLDVDRISHVINYDIPSDTESYVHR----IGRTGRAGRS--GEAILFVSPREKNMLYAIE 379 Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 + TR+R + +E IN + V + + D I ED Sbjct: 380 KATRKRIELMELPSTEIINDKRVAKFKQRITDTIAAED 417 >gi|254225064|ref|ZP_04918678.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V51] gi|125622451|gb|EAZ50771.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V51] Length = 979 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 522 PTE-----SKILFLQQLGRGLR 538 >gi|327283103|ref|XP_003226281.1| PREDICTED: interferon-induced helicase C domain-containing protein 1-like [Anolis carolinensis] Length = 1006 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 13/93 (13%) Query: 604 ERNIRVRYM-----HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E ++ Y+ +SE K + E+ ++I R+GK ++L+ + EGLDIPEC +V Sbjct: 723 EAGVKAHYLIGAGHNSEFKPMTQNEQKDVIEKFRIGKINLLIATTVAEEGLDIPECNIVI 782 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + G + ++ +++Q GRA + ++ V++ Sbjct: 783 -----RYGLVTNEIAMVQARGRARADESTYVLV 810 >gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579] Length = 1296 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 RRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT N A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227 Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 987 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1043 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1044 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1079 >gi|312898312|ref|ZP_07757702.1| UVR domain protein [Megasphaera micronuciformis F0359] gi|310620231|gb|EFQ03801.1| UVR domain protein [Megasphaera micronuciformis F0359] Length = 169 Score = 47.0 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 4/46 (8%) Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804 + KAH+K LR+++ L N+EEAARIRDEIK L F+G +D Sbjct: 126 RTKAHIKKLRRELKLMVAQENYEEAARIRDEIKALS----FEGGED 167 >gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037] gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037] Length = 524 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142] gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142] Length = 1159 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 ++L+ G + + K+ LVK Y+R ++ + G + GD ++IFP E V R+ FG Sbjct: 144 LKLQAGMTEKSKKFDEGLVKLGYERVNLVEVEGQWSRRGDIVDIFPVSSE-VPIRLEWFG 202 Query: 355 NDIEEISEFYPLTGQKIRNVETI 377 +++E+I EF P T + + ++E I Sbjct: 203 DELEKIREFDPATQRSLDSIENI 225 >gi|15674226|ref|NP_268401.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis Il1403] gi|12725313|gb|AAK06342.1|AE006453_6 ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis Il1403] Length = 666 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +L EY + ++ +H ++K E+ +I+++ + K D+LV ++ G+D+P ++ I Sbjct: 487 ELNEY-FGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVI 545 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691 +DAD+ G + L Q GR R S IL A+ Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGTKKSYAILVAN 577 >gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5] gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5] Length = 525 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779] gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779] Length = 524 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|229513052|ref|ZP_04402518.1| helicase-related protein [Vibrio cholerae TMA 21] gi|229349945|gb|EEO14899.1| helicase-related protein [Vibrio cholerae TMA 21] Length = 978 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 Q + ++I G DP + TQ E VY + Q R L ++K+ A+ + Sbjct: 404 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 461 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 E+ + I+ ++S+ K + R + ++ L GK D+L ++L EG D+P + +L Sbjct: 462 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 520 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 521 PTE-----SKILFLQQLGRGLR 537 >gi|209879417|ref|XP_002141149.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66] gi|209556755|gb|EEA06800.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66] Length = 590 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 19/144 (13%) Query: 552 TGLVDP-PVEIRSARTQVEDVYDEINLAAQQ-------------GLRILLTVLTKRMAED 597 T LVDP V + A +V E+ Q+ R+L+ K+ ++ Sbjct: 350 TALVDPIVVNVGRAGATTLNVLQELEYVRQECRLPHILQSLQKTAPRVLIFCENKKDVDE 409 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 + EYL + ++ +HS + +R + + RLG DVL+G ++ +GLD P V Sbjct: 410 IHEYLLLKGVKAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASKGLDFPNIHHVINY 469 Query: 658 DADKEGFLRSKTSLIQTIGRAARN 681 D KE + + IGR R Sbjct: 470 DMPKE-----IENYVHRIGRTGRG 488 >gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684] gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684] Length = 1112 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L++G+ ++ E LV Y+R D RG F + G ++++P+ ED A RV +FG++ Sbjct: 139 LRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPA-TEDRAVRVDLFGDE 197 Query: 357 IEEISEFYPLTGQKIRNVETIKI 379 IE + F T + + + E +++ Sbjct: 198 IESLRWFSTFTQRSLGDAEEVEV 220 >gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B] gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B] Length = 909 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + +++LK+GD E E L S K Y+R G F + GD I+ + + +V R Sbjct: 73 FKKYVIELKVGDIFESPEELFS--KLGYERVYNVTEGGQFSIRGDIIDFYGPN--EVPTR 128 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 + +F N IE+I F P T + IR +E I Y+ P Sbjct: 129 IELFDNLIEDIRHFDPSTQKSIRKIEKALILPAREYIEP 167 Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A+ L E + E +I + K +E++ I + GK DVLV +++ G+DIP Sbjct: 614 VAKKLKEIVPEVSIDIANGQMPKKRMEKV--IEEFYHGKLDVLVATSIIENGVDIPNANT 671 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + + DA + G L Q GR R+ Sbjct: 672 LIVDDAHRYGL----AQLYQLRGRVGRS 695 >gi|254448948|ref|ZP_05062403.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015] gi|198261485|gb|EDY85775.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015] Length = 700 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTK------RMAEDLTEYLYER--NIRVRYMH 613 A ++ DV + I A +QG ++ + T++ + + AED L E +R+ +H Sbjct: 472 AESRRADVIERIRSACEQGRQVYWVCTLIEESEMVQCQAAEDTASSLAEAMPAVRIGLVH 531 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 +K ++ + + G D+LV ++ G+D+P L+ I +A++ G + L Q Sbjct: 532 GRMKPADKERTMAQFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGL----SQLHQ 587 Query: 674 TIGRAARNV--NSKVILYADTITKSIQLAIDETTRRREKQLE 713 GR R +S V+LY + + + + +D T RR E Sbjct: 588 LRGRVGRGAVESSCVLLYKNPLGEKARRRLD-TMRRSNDGFE 628 >gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922] gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922] Length = 1114 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 24/214 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G GS +F +A++ R +++ +K AA ++ + V ++ P Sbjct: 29 GFLGSALSFAIAQLYLQTNRSILMVTDDKEEAAYWLNDLEALLNQEQVLFY--------P 80 Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRM-RHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 AY RT +IE+ ++ N E ++++ HS+ + ++ D + ++ + Sbjct: 81 SAY--RTPYHIEETNNANVVIRTEVLNQLTSHSSPKIIVAYADALTEKVITK-------K 131 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + S +++K+G + + L +++ D G F + G I+IF S ++ + Sbjct: 132 ALSTNTLKIKVGTELGLDFIRDMLFSYNFRQVDFVNEPGEFSIRGGIIDIF-SFADEHPY 190 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 R+SMFG+++E I F T I + IKI N Sbjct: 191 RISMFGDEVETIRSFDTSTQLSISTTKEIKIIPN 224 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 11/153 (7%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT---VLTKRMAEDLTEYLYERNIRVRYMHS 614 PVE E + D I Q+G +I V T + + + L + R+ H Sbjct: 734 PVETNLIEFNEEAIRDAILYEMQRGGQIFFIHNRVQTLKEIAGMVQRLVP-DARIATGHG 792 Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 ++ + I+ D G++DVL+ ++ GLD+P + I DA G L Q Sbjct: 793 QMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVPNANTILINDAQNFGL----ADLHQM 848 Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 GR R+ N K Y I + + +E +R Sbjct: 849 RGRVGRS-NRKAFCY--LIAPPVSVLTNEARKR 878 >gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus infantis SK1302] gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus infantis SK1302] Length = 525 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor] gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor] Length = 673 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D+I + G +I++ TKRM + L L R +H + ER ++ D R G+ Sbjct: 393 DQILRSQDPGSKIIIFCSTKRMCDQLARNL-SRQYGASAIHGDKSQSERDSVLNDFRSGR 451 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYA 690 VLV ++ GLDI + +V D F + IGR R S + Sbjct: 452 CPVLVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGSAYTFFG 506 Query: 691 DTITK 695 D +K Sbjct: 507 DQDSK 511 >gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB 48] gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB 48] Length = 1168 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 I+ +S S + ++ ++ LK G S+E EL + + Y R RG F V Sbjct: 108 ILTTSASLSQKVPPRDAMRGSLLSLKPGQSIETGELEAYFSRNGYNRVSTVSERGEFAVR 167 Query: 333 GDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 G I++F PS E V R+ FG+ +E I F P T + ++ + I A S Sbjct: 168 GGIIDVFSPSQDEPV--RLDFFGDQLESIRTFDPETQRSLKQIAAIDFMAVS 217 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 21/196 (10%) Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ----- 580 + +SATP L+ I E I T PPV+ + RT V +D +++ Sbjct: 772 LTLSATPIPRTLQMALSGIREMSIIAT----PPVDRLAVRTYVLP-FDAVSIREALLREK 826 Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637 +G + V + DL +L E+ V+++ H ++ + E++ G++DVL+ Sbjct: 827 YRGGQAYYVVPRLKDLPDLERFLREQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLL 886 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 ++ GLD+P + + AD G L Q GR R SK +A T+ Sbjct: 887 ATTIVESGLDVPTANTLIVHRADMFGL----AQLYQIRGRVGR---SKTRAFAYLTTQPH 939 Query: 698 QLAIDETTRRREKQLE 713 Q+ + E + +R K L+ Sbjct: 940 QI-LSEASEKRLKVLQ 954 >gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC 8290] gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC 8290] Length = 1168 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T + +++ RP +V+ A QL S+F N + + F Sbjct: 17 QLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFHADQLVSDFSNLLEDDQIFEF----- 71 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P + + ++ + + R A L+ ++V+SVS + + S + Sbjct: 72 --------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPSPDQ 123 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 +S + + + + ++L L + Y Q + G F + G +++FP + +D R Sbjct: 124 FSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDPV-R 182 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F +++ + F + I+ + TI+I Sbjct: 183 IDFFDTEVDSMRLFDVSNQRSIKTINTIQI 212 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y+H ++ + +I+ D G++DVLV ++ G+DIP + + +AD G L Sbjct: 845 DARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMG-L 903 Query: 666 RSKTSLIQTIGRAAR 680 L IGR++R Sbjct: 904 SQLYQLRGRIGRSSR 918 >gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51] gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51] Length = 688 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L +N +H + ER + R GK +L Sbjct: 451 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 510 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 511 VATAVAARGLDIPNVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 555 >gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii DSM 18315] gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii DSM 18315] Length = 372 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K ++L L V MHS+++ +R E++++ + G+ D+LV +++ Sbjct: 192 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVS 251 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI + LV D D E + + IGR AR N + Sbjct: 252 RGIDINDIKLVINFDIPHDPEDY-------VHRIGRTARGTNGE 288 >gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium BBFL7] gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium BBFL7] Length = 1112 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/214 (21%), Positives = 99/214 (46%), Gaps = 27/214 (12%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L G+ GS T + + + +++P +++A +K AA + ++F+ + V ++ Sbjct: 32 LSGLQGSAFTIAASSIFDEVEKPFMIIANDKEQAAYMLNDFEKMLGDDRVLFY------- 84 Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286 P +Y R IEK + N E ++R+ + ++V+ + ++ + + Sbjct: 85 -PGSY--RRPYQIEKTDNANVLLRAEVLNRINS-------RKKPAVIVTYPNALFEKVVT 134 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 + + +++ IGD + L + ++KR D G F V G +++F S D Sbjct: 135 RKELEKNTLKIAIGDQISIDFANEVLFEYEFKRVDFVTEPGEFSVRGGILDVF-SFSHDE 193 Query: 347 AWRVSMFGNDIEEISEF---YPLTGQKIRNVETI 377 +R+ FGN+I+ I F L+ ++I+ + I Sbjct: 194 PYRIEFFGNEIDTIRVFDVDTQLSKEQIKKISII 227 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYERNI---RVRYM 612 P+E R R E + D ++ +G ++ E++ E + +R++ RV Sbjct: 734 PIESRVIRFSEETIRDAVSYEISRGGQVFFV---HNRIENIKEVAGMIQRSVPDARVGIG 790 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H ++ + E++ G FDVLV ++ GLD+P + I +A+ G + L Sbjct: 791 HGQMDGKKLEELMLSFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGL----SDLH 846 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 Q GR R+ N K Y IT + D+ +R Sbjct: 847 QMRGRVGRS-NKKAFCY--FITPPYDMMTDDARKR 878 >gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans C-125] gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans C-125] Length = 1181 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 62/318 (19%), Positives = 136/318 (42%), Gaps = 24/318 (7%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 +++G+ K QL+ G++GS + MA + + +RP +V+ N A +++ + Sbjct: 17 IVQGLEVNMKEQLVSGLSGSARPAVMAALYKETRRPQLVITYNLYQAQKIFEDLVELVGA 76 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 + V + P D + + + ++ R L+ IVV ++ Sbjct: 77 DHVLLY-------------PVNDLISSEIAIASPEMKAQRIDVLNQLVAGFSGIVVVPLA 123 Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKE-LLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + S + + ++L +GD + E L+ LV+ + R D+ G V G I+ Sbjct: 124 GMRRLLPPSSLWKESQIRLSVGDDIGDLESLIRRLVRNGFTRVDMVTTPGECSVRGGIID 183 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 ++P ED R+ +F +I+ I F + ++ + I + + Sbjct: 184 LYPLTEED-PIRIELFDTEIDSIRTFTIEDQRSKDSLSEVVIGPAAEIIMDEEHFIQGAS 242 Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 +++ L L +++K+ ++L ++I++D+ L+ S+ Y + Sbjct: 243 RLEDRLSQTLKKVKKK---EVKEKLTEQISFDISELKQKHPFPSMYKYISLFY-----DD 294 Query: 458 PPTLFEYIPEDSLLFVDE 475 +LF Y+P + ++FVDE Sbjct: 295 TYSLFSYVPSNGVIFVDE 312 Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +RMA +++ + + RV + H ++K E I+ G+ DVLV ++ G+DIP Sbjct: 847 ERMANEIS--MLVPDARVSFAHGQMKESELESIMLAFLEGESDVLVTTTIIETGVDIPNV 904 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G + L Q GR R+ Sbjct: 905 NTLIIHGADKMGL----SQLYQIRGRVGRS 930 >gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus] Length = 698 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +IL+ V KR+A+ + YL E+ R MH + +R + + R G ++LV + Sbjct: 513 KILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGVHNILVATAVAA 572 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDI G+V D KE + IGR R Sbjct: 573 RGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGR 604 >gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis] Length = 722 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V KR A+ + +L + N+ +H + + +R + + D + GK VLV ++ Sbjct: 533 RTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADFKYGKCPVLVATSVAA 592 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692 GLDIP+ V D S + IGR R N + + + DT Sbjct: 593 RGLDIPDVQHVVNFD-----LPGSIDEYVHRIGRTGRCGNVGRAVSFFDT 637 >gi|281492921|ref|YP_003354901.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis KF147] gi|281376573|gb|ADA66059.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis KF147] Length = 666 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +L EY + ++ +H ++K E+ +I+++ + K D+LV ++ G+D+P ++ I Sbjct: 487 ELNEY-FGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVI 545 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691 +DAD+ G + L Q GR R S IL A+ Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGTKKSYAILVAN 577 >gi|225011211|ref|ZP_03701670.1| transcription factor CarD [Flavobacteria bacterium MS024-3C] gi|225004625|gb|EEG42588.1| transcription factor CarD [Flavobacteria bacterium MS024-3C] Length = 681 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 58/255 (22%), Positives = 102/255 (40%), Gaps = 29/255 (11%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VS 227 K L G+ GS +F + + + P +++ +K AA + ++ ++F + V ++ S Sbjct: 21 KTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPAS 80 Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND------CIVVSSVSCI 281 Y YQ + Q D +L+R CIV + Sbjct: 81 YKKPYQ------------------HSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIF 122 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + ++ + + LK G+ + L SL + +KR D G F V G +++F S Sbjct: 123 EKVIQKKTLEKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVF-S 181 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 + D +R+ FG ++E I F ++ + I E I I N VT TL + Sbjct: 182 YAYDHPYRIEFFGEEVESIRTFDIVSQRSIAKQEEISIIPN---VTQTDTLTKRQDFFSF 238 Query: 402 ELKMRLIELEKEGRL 416 K + + K G L Sbjct: 239 TDKKTTVLIRKPGVL 253 >gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597] gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597] Length = 520 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus corporis] gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus corporis] Length = 449 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+++++++ V MH +++ ER I+R R G VL+ +LL G+D+ + Sbjct: 324 TRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLITTDLLARGIDVQQ 383 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IGR+ R Sbjct: 384 VSLVINYDLPS-----NRENYIHRIGRSGR 408 >gi|326407876|gb|ADZ64947.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis CV56] Length = 666 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +L EY + ++ +H ++K E+ +I+++ + K D+LV ++ G+D+P ++ I Sbjct: 487 ELNEY-FGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVI 545 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691 +DAD+ G + L Q GR R S IL A+ Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGTKKSYAILVAN 577 >gi|296204692|ref|XP_002749435.1| PREDICTED: interferon-induced helicase C domain-containing protein 1 [Callithrix jacchus] Length = 1025 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 10/115 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEV 732 R S +L A + + I+ + REK + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVASSSSGVIER--ETVNDFREKMMYKAIHHVQNMEPEEYAHKILEL 876 >gi|298346962|ref|YP_003719649.1| putative DNA helicase RecG [Mobiluncus curtisii ATCC 43063] gi|304389327|ref|ZP_07371292.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298237023|gb|ADI68155.1| possible DNA helicase RecG [Mobiluncus curtisii ATCC 43063] gi|304327445|gb|EFL94678.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 816 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RIL TV + A L R++ + HS + + + + + D G+ +LV ++ Sbjct: 596 RILHTV--TQTAARLAALPIFRDVPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVE 653 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+D+PE ++ ILDAD+ G + L Q GR R V L Sbjct: 654 VGMDVPEASMMIILDADRYGI----SQLHQLRGRIGRGSRPGVCL 694 >gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC 11577] gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC 11577] Length = 1168 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 15/210 (7%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G++GS +T + +++ RP +V+ A QL S+F N + + F Sbjct: 17 QLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFHADQLVSDFSNLLEDDQIFEF----- 71 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289 P + + ++ + + R A L+ ++V+SVS + + S + Sbjct: 72 --------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPSPDQ 123 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 +S + + + + ++L L + Y Q + G F + G +++FP + +D R Sbjct: 124 FSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDPV-R 182 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 + F +++ + F + I+ + TI+I Sbjct: 183 IDFFDTEVDSMRLFDVSNQRSIKTINTIQI 212 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y+H ++ + +I+ D G++DVLV ++ G+DIP + + +AD G L Sbjct: 845 DARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMG-L 903 Query: 666 RSKTSLIQTIGRAAR 680 L IGR++R Sbjct: 904 SQLYQLRGRIGRSSR 918 >gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641] gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641] Length = 524 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268] gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268] Length = 1138 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ Y H ++ E EI+ G+ DVLV ++ GLDIP + I DADK G Sbjct: 825 RIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGL--- 881 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + K + +E+ +R Sbjct: 882 -SQLYQIRGRVGRSNRTS---YAFLLYKKGKSLTEESEKR 917 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 2/151 (1%) Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQL 297 P D K + I R R R L+E + ++V+++ + + + ++ Q + + Sbjct: 88 PAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTLPAMLEKLEGKNAFRQAVFTV 147 Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 ++G ++ + L SL Y+R D RG + + G +++F + +E+ R+ F +++ Sbjct: 148 QLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILDVFSNQMEE-PLRIEFFDDEV 206 Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 + + F + + + VE IY S P Sbjct: 207 DSLRYFSLESQRSLEQVEEANIYPVSEQGKP 237 >gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis] gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis] Length = 800 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + ++ +K A +L+ + +H +++ ER +++ R G F+VL+ N+ Sbjct: 475 KTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAA 534 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDIPE LV + A KE + + GR R + V + Sbjct: 535 RGLDIPEVDLVVLYSAPKEA-----DAYVHRSGRTGRAGRTGVCI 574 >gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis SK408] Length = 1167 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E ++ +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225 Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908 Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927 >gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis SK330] Length = 1167 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E ++ +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum DSM 20595] gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum DSM 20595] Length = 1168 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 V +KIGD+++ ++ LV Y R D+ RG F V G ++IFP E R+ +FG Sbjct: 140 VVIKIGDTIDIADVQERLVAHAYTRVDMVETRGEFAVRGGILDIFPP-TEAHPMRIELFG 198 Query: 355 NDIEEISEF 363 +++++I F Sbjct: 199 DEVDDIRSF 207 >gi|294940572|ref|XP_002782818.1| helicase, putative [Perkinsus marinus ATCC 50983] gi|239894861|gb|EER14614.1| helicase, putative [Perkinsus marinus ATCC 50983] Length = 167 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +G RI++ TK+ A+ LT + N +H + + ER I+ D + G+ +VLV + Sbjct: 3 KGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATD 62 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694 + + GLDI V D K + I GRA NS + DT T Sbjct: 63 VAQRGLDIKNVEWVVNYDMPKT--IEDYVHRIGRTGRAGAVGNSLTFITNDTHT 114 >gi|125625276|ref|YP_001033759.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris MG1363] gi|124494084|emb|CAL99085.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300072086|gb|ADJ61486.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris NZ9000] Length = 666 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ +H ++K E+ +I+++ + K DVLV ++ G+D+P ++ I+DAD+ G Sbjct: 497 KIGLLHGKMKNDEKDQIMQEFKAKKLDVLVSTTVIEVGVDVPNATIMVIMDADRFGL--- 553 Query: 668 KTSLIQTIGRAARNV-NSKVILYAD 691 + L Q GR R S IL A+ Sbjct: 554 -SQLHQLRGRVGRGTKKSYAILVAN 577 >gi|50309425|ref|XP_454720.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643855|emb|CAG99807.1| KLLA0E17095p [Kluyveromyces lactis] Length = 690 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL + + L + I +Y+ + +T ER I+ D + GK VL+ + EG Sbjct: 299 LLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEG 358 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 DIP V + K S++ L+Q IGR R +SK Sbjct: 359 TDIPNVDCVLLCRPTK-----SRSLLVQMIGRGLRKHHSK 393 >gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis SK1059] Length = 1167 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDLLDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|239988002|ref|ZP_04708666.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 11379] Length = 1045 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ V D+I +R L ++ A + ++ + + E ER Sbjct: 543 ARLVVQAVKDKIT--DPDSMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPAHERKA 600 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + DLR G V+ ++L EGLDIP+ + +L S T +Q +GR R Sbjct: 601 ALDDLRSGALQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 655 Query: 684 SKVIL 688 K +L Sbjct: 656 DKAVL 660 >gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus] Length = 679 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L L + + +H + + ER E +RD ++G+ VLV ++ Sbjct: 484 RTLVFVETKRNADFLATLLSQSDFHATSIHGDRQQQEREEALRDFKIGRAPVLVATSVAA 543 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 544 RGLDIPKVKHVVNYDLPSD-----IDEYVHRIGRTGRVGNT 579 >gi|170083899|ref|XP_001873173.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650725|gb|EDR14965.1| predicted protein [Laccaria bicolor S238N-H82] Length = 635 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT+ + + RY+H+ ER ++ + G F VLV +L EG DIP V I Sbjct: 300 LTQSFRQFGVDARYLHAGTPIAERKALVAMFKAGHFPVLVNCAILTEGADIPNIDCVLIA 359 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 RS+ Q IGR R Sbjct: 360 RPT-----RSRNVFAQMIGRGMR 377 >gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus TB-2] gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus TB-2] Length = 981 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + +S S I V+ Y + I L GDS++ +E+ + + Y+R DI +G Sbjct: 73 NAYFISPYSTIMKKLPVKKYYKSI-DLNFGDSIDLEEIKKTFILWGYERVDIVSEKGEVS 131 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++I+P + + R+S+F +IE I EF T + I +E+IKI Sbjct: 132 FRGDILDIWPINTKK-PIRISLFDIEIESIREFDETTQKSIDEIESIKI 179 >gi|121998486|ref|YP_001003273.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira halophila SL1] gi|121589891|gb|ABM62471.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila SL1] Length = 808 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 16/135 (11%) Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605 ++DP + IR SAR+Q + LA + GL+ +L ++ M E LT+YL + R Sbjct: 271 VIDPDLGIRASARSQTTRI---ARLAVRSGLKAILFARSRLMVEVLTKYLKDVFDRDPRR 327 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 RV ER E R LR G D +V + L G+DI VA+L+ G+ Sbjct: 328 PPRVAAYRGGYLPAERRETERALRGGGVDCVVATSALELGVDIGSLD-VAVLN----GYP 382 Query: 666 RSKTSLIQTIGRAAR 680 + Q +GRA R Sbjct: 383 GTIAGTWQRLGRAGR 397 >gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus Tu4000] gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus Tu4000] Length = 1187 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + FT+A + RP + + A L + ++ P V + S+ + E Sbjct: 48 AARPFTVAALARDTGRPVLAVTATGREAEDLAAALRSLLPPEGVVEYPSW-ETLPHERLS 106 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ V + G+G +E Sbjct: 107 PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 158 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G + + + +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 159 -VSLRTGGTADLGATVEALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 216 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 217 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 245 >gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis HN019] gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis HN019] gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis subsp. lactis V9] Length = 1194 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249 A ++P +++ P+ A L + ++++ + E + ++ E PR DT + Sbjct: 75 ADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHERLSPRADTVANR-- 132 Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDS 302 E R+ H + S + I+V V + GIG V+ ++Q G+ Sbjct: 133 --METFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ-------GEE 183 Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEIS 361 + ++ + LV+ Y R D+ + RG F V G I++F P+ V R+ FG++I+ I Sbjct: 184 ITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPV--RIEFFGDEIDTIR 241 Query: 362 EFYP----LTGQKIRNV 374 F+ G+ IR+V Sbjct: 242 RFHSSDQRTYGEPIRSV 258 >gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1176 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 15/193 (7%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 VT + + + + + R +V++ N A L+ E +F + + Sbjct: 62 VTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDL------------- 108 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294 Y+P + + ++ R R A +L ++ +SV+ + + V++ Sbjct: 109 VYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQGRA 168 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L+ G ++ + LL L+ YKR D+ G F + G ++I+ S+ ++ R+ +FG Sbjct: 169 ITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRIDLFG 227 Query: 355 NDIEEISEFYPLT 367 +IE I F P T Sbjct: 228 EEIESIRTFDPDT 240 >gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis] Length = 768 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + ++ +K A +L+ + +H +++ ER +++ R G F+VL+ N+ Sbjct: 443 KTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAA 502 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDIPE LV + A KE + + GR R + V + Sbjct: 503 RGLDIPEVDLVVLYSAPKEA-----DAYVHRSGRTGRAGRTGVCI 542 >gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus 1_2_62CV] gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus 1_2_62CV] Length = 565 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 295 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 352 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 353 SGVTHVYNYD---IPQDPESYVHRIGRTGR 379 >gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis] Length = 745 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + L+ V KR A+ L YL + +H + ER E +RD + G+ +LV ++ Sbjct: 551 KTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKTGRAPILVATSVAA 610 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAI 701 GLDIP V D +S + IGR R NV Y D I A+ Sbjct: 611 RGLDIPLVKHVINYD-----LPQSIDEYVHRIGRTGRCGNVGKSTSFYTDDSDGGIAKAL 665 >gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family [Streptococcus mitis B6] gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family [Streptococcus mitis B6] Length = 521 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides DSM 12442] gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides DSM 12442] Length = 528 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708 G+ + + D + S + IGR R + + T +S QL I++TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRK 362 >gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides Rock3-17] gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides Rock3-17] Length = 536 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708 G+ + + D + S + IGR R + + T +S QL I++TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRK 362 >gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2 A Resolution Length = 410 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 269 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 369 >gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus] gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus] gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus] gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus] gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus] gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus] gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus] gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus] gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus] gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus] Length = 411 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M334] gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M334] Length = 524 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE] gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE] Length = 1176 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 22/238 (9%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+A+ +K + + L + + F +A + R + + A L + + Sbjct: 15 ALAEAVKAATDGHRSHVDLVGPPAARPFAVAALAREAGRTVLAVTATGREAEDLAAALRT 74 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 P + + F S+ + E PR+DT + + + R+ H +VV Sbjct: 75 LLPPDTIAEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRADDPETGPVGVVV 129 Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + + + G+G +E V L G + + E++ +L Y R ++ RG F Sbjct: 130 APIRSVLQPQVKGLGDLEP-----VALSSGQTADLGEVVDALAAAAYARVELVEKRGEFA 184 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G +++FP E+ RV +G+D+EEI F K+ + ++++ A+ + P Sbjct: 185 VRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF------KVADQRSLEVAAHGLWAPP 235 >gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] Length = 484 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q+ R+++ +K+ ++L L + V MHS+++ +R E++ + G+ D+L Sbjct: 245 FADQKPERVIIFCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDIL 304 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V +++ G+DI + LV D R + IGR AR Sbjct: 305 VATDIVARGIDIDDITLVINYDVP-----RDAEDYVHRIGRTAR 343 >gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis SK405] gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis SK678] gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis SK160] gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1] gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis SK1058] Length = 1167 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E ++ +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225 Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908 Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927 >gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni] gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni] Length = 802 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 564 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 623 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 624 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 667 >gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus] Length = 406 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 320 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 365 >gi|254423305|ref|ZP_05037023.1| primosomal protein N', putative [Synechococcus sp. PCC 7335] gi|196190794|gb|EDX85758.1| primosomal protein N', putative [Synechococcus sp. PCC 7335] Length = 889 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 18/154 (11%) Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+ DL +YL + + IR + K R + R R G+ ++LVG +L +G+D+P Sbjct: 614 TQRVVNDLAKYLPQIKCIRFDSDTTRNKGAHRALLARFAR-GEANLLVGTQMLTKGIDLP 672 Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAI 701 + LV ++ AD F+ R+ +L Q GRA R +VI+ + ++ A+ Sbjct: 673 QVVLVGVIAADGLLFMPDFRASERAYQTLTQVAGRAGRGEQPGRVIVQTYSPENAVIQAL 732 Query: 702 DETTRRREK-----QLEHN---KKHNINPQSVKE 727 ++ E+ QLE K+ I PQ + + Sbjct: 733 RGSSTEDEQGISMPQLEKKPMAKQQAIKPQMIDQ 766 >gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 903] gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 903] Length = 523 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] Length = 415 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 10/116 (8%) Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 NL A+Q R+++ +K +++T+ L + + V MHS+++ +R +++ + + G+ + Sbjct: 237 NLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRIN 296 Query: 635 VLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 +LV +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|229101040|ref|ZP_04231822.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28] gi|228682378|gb|EEL36473.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28] Length = 374 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 94 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 151 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 152 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 208 Query: 710 KQLE 713 ++E Sbjct: 209 DRME 212 >gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus] Length = 411 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|42525018|ref|NP_970398.1| putative ATP-dependent helicase [Bdellovibrio bacteriovorus HD100] gi|39577229|emb|CAE81052.1| putative ATP-dependent helicase [Bdellovibrio bacteriovorus HD100] Length = 580 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 +QG+ I + T + AE++ YL RV + +++K ER +II D + KF LV + Sbjct: 252 RQGVMIFAS--TIKHAEEIMTYLPTDQARVVFGDTDIK--ERAQIIHDFKQKKFKYLVNV 307 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++L G D P ++AIL + L Q +GR R Sbjct: 308 SVLTTGFDAPHVDVIAILRPTESNSLYQ-----QIVGRGLR 343 >gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 233 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 287 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 288 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 333 >gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex] Length = 738 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A+ L E+LY V +H + ER + ++ R GK +LV + G Sbjct: 498 LVFVETKRGADALEEFLYRDGYPVTSIHGDRSQREREDALKRFRSGKTPILVATAVAARG 557 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 558 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 601 >gi|300361942|ref|ZP_07058119.1| DNA helicase RecG [Lactobacillus gasseri JV-V03] gi|300354561|gb|EFJ70432.1| DNA helicase RecG [Lactobacillus gasseri JV-V03] Length = 679 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRI-LLTVLTK-------RMAEDLTEYL--YERN 606 P V + +++++V + + L +G +I ++T L + AEDL L Y ++ Sbjct: 442 PVVSSWATSSKLKEVLELMRLQLDKGFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKD 501 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 V +H ++K ++ EI+ GK D+LV +++ G+D+P ++ I +AD+ G Sbjct: 502 ENVVLLHGQMKGNQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNANMMVIFNADRFGL-- 559 Query: 667 SKTSLIQTIGRAARN 681 + L Q GR R Sbjct: 560 --SQLHQLRGRIGRG 572 >gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST196] gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST196] Length = 538 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 548 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 21/174 (12%) Query: 549 IRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGLRILLT--------------VLTKR 593 I T L DP V +++A T E++ L A LLT V TK+ Sbjct: 200 ISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSAMIVFVRTKQ 259 Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ED+ E L R R ++ ++ R + LR GK D+LV ++ GLD+ Sbjct: 260 ATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAARGLDVERITH 319 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTR 706 V D + S + IGR R + V L+ +S+ AI+ TR Sbjct: 320 VFNYDVPHD-----TESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIERATR 368 >gi|224046936|ref|XP_002196956.1| PREDICTED: putative DEAD box polypeptide 48 [Taeniopygia guttata] Length = 341 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 200 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 254 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 255 SGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 300 >gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1415 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++L+ ++L EG+D+ C LV DA +++ S IQ GR AR S Sbjct: 459 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDA-----IKNLRSFIQRRGR-ARKERS 512 Query: 685 KVILYADT 692 K +++ D+ Sbjct: 513 KFVMFLDS 520 >gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01] gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01] Length = 1153 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 19/228 (8%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 LKG ++ + L+G S +A++ E ++ P+ +A +L SE + F H Sbjct: 12 LKGAGDKKHIGNLVG---SSLALAIARLAEQHNSHTLLAVPDPQIALKLQSEIEQFTSHE 68 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 V+ + ++ Y D++ + I+++I R+ +L D I + +S Sbjct: 69 -----VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114 Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + S + Q + +K GD ++L L K Y+ D G + G +++F Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 P +D +R+ F ++I+ I F P + I ++ I++ + T Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEFPT 221 >gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] Length = 426 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K ++L L V MHS+++ +R E++++ + G D+LV +++ Sbjct: 247 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI + LV D D E + + IGR AR N + Sbjct: 307 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 343 >gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis] gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis] Length = 817 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 572 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 631 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D D E ++ +T + +G A N K Sbjct: 632 LDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDK 675 >gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus] gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa] gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus] gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna [Monodelphis domestica] gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus norvegicus] gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus] gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa] gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus] gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus] Length = 411 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces stipitis CBS 6054] gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis CBS 6054] Length = 399 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD NL Q + + TK LT+ + ++N V MH ++K ER I+ D R Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + I IGR+ R Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358 >gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis] Length = 411 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens] gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca mulatta] gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii] gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus leucogenys] gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic initiation factor 4A-like NUK-34; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3; AltName: Full=Nuclear matrix protein 265; Short=NMP 265; Short=hNMP 265 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo sapiens] gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo sapiens] gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo sapiens] gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens] gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct] gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo sapiens] gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo sapiens] gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens] gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct] Length = 411 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA17545] Length = 524 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|320166584|gb|EFW43483.1| Ddx52 protein [Capsaspora owczarzaki ATCC 30864] Length = 256 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 580 QQGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 Q+G+R IL+ V + A+ L E LYE+ + V +H+E +LER I++ R GK L Sbjct: 28 QKGVRPPILVFVQSVDRAKQLHREMLYEK-MNVDVIHAERTSLERETAIKNFRTGKTWFL 86 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + LL G+D LV D F ++ S I IGR R Sbjct: 87 IATELLARGMDFKGVNLVINFD-----FPQTAESYIHRIGRTGR 125 >gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3] gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3] Length = 530 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271] gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271] Length = 527 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18] gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29] gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3] gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3] gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29] gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18] Length = 529 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 isoform 1 [Canis familiaris] Length = 411 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO] Length = 452 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 241 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 300 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ V Sbjct: 301 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 345 >gi|320580361|gb|EFW94584.1| eukaryotic initiation factor 4A [Pichia angusta DL-1] Length = 381 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD I++ + ++ T+R E LT+ L E N V +HS++ +R I+ + R Sbjct: 239 DLYDSISVT-----QAVIFCNTRRKVETLTQQLTENNFTVSAIHSDLSQQDRDTIMNEFR 293 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G +L+ +LL G+D+ + LV D ++KE ++ Sbjct: 294 TGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 331 >gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7] Length = 426 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K ++L L V MHS+++ +R E++++ + G D+LV +++ Sbjct: 247 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI + LV D D E + + IGR AR N + Sbjct: 307 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 343 >gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM 17393] gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM 17393] Length = 428 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++T+ L + V MHS+++ +R E++ + + G+ ++L Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVNIL 298 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] Length = 426 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K ++L L V MHS+++ +R E++++ + G D+LV +++ Sbjct: 247 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI + LV D D E + + IGR AR N + Sbjct: 307 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 343 >gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] Length = 559 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +Q+ ++L+ V TKR+A+DLT++L +H + + ER ++ + + G+ +++ Sbjct: 372 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 431 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + G V D F + I IGR R Sbjct: 432 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 468 >gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] Length = 546 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +Q+ ++L+ V TKR+A+DLT++L +H + + ER ++ + + G+ +++ Sbjct: 359 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 418 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + G V D F + I IGR R Sbjct: 419 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 455 >gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like [Acyrthosiphon pisum] Length = 681 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE R+ R+ + D+ + + ++ IL+ V TK+ A+ L E+LY V +H + Sbjct: 433 VEDRNKRSYLLDLLNATPIRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRT 492 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQ 673 ER + ++ R G VLV + GLDIP V D +D E ++ +T + Sbjct: 493 QREREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMG 552 Query: 674 TIGRAARNVNSK 685 +G A N K Sbjct: 553 NLGLATSFFNDK 564 >gi|319946374|ref|ZP_08020612.1| DNA helicase RecG [Streptococcus australis ATCC 700641] gi|319747527|gb|EFV99782.1| DNA helicase RecG [Streptococcus australis ATCC 700641] Length = 671 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+L Y +R R+ +H ++K E+ I++ + G+ D+LV ++ G+++P + Sbjct: 484 LEEELIAYFGDRA-RIALLHGKMKGEEKEAIMQAFKQGEIDLLVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T+S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582 >gi|268611638|ref|ZP_06145365.1| primosomal protein N' [Ruminococcus flavefaciens FD-1] Length = 814 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 13/101 (12%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI---IRDLRLGKFDVLVGINLLREGLD 647 T+++ E+L Y + RV M ++ T R D R GK+D+++G ++ +GLD Sbjct: 569 TQKLEEELAVYFPQ--ARVLRMDADT-TFSRYSYEKNFADFRDGKYDIMIGTQMIGKGLD 625 Query: 648 IPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681 P+ LV +L DK F R+ + + Q +GR+ R Sbjct: 626 FPDVTLVGVLSVDKALFAGDFRSYERTFSLITQVVGRSGRG 666 >gi|258645369|ref|ZP_05732838.1| primosomal protein [Dialister invisus DSM 15470] gi|260402718|gb|EEW96265.1| primosomal protein [Dialister invisus DSM 15470] Length = 791 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R+ EDL + L E + S + +I+ + R GKFD+L G ++ +G DIP Sbjct: 558 TQRIEEDLKKLLPEAKCCRFDVDSTARKYSAAKILSNFRDGKFDILFGTQMVAKGHDIPG 617 Query: 651 CGLVAILDADKE----GFLRSKTS---LIQTIGRAARNV-NSKVIL 688 V IL D +L ++ + + Q GRA RN+ +VIL Sbjct: 618 VQSVGILSVDSTLNMPTYLAAEQTFNLITQCAGRAGRNLEQGRVIL 663 >gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 417 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V +++ A+ +T L IR +H + +R +++ DL+ G+ VLV ++ Sbjct: 242 RVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVATDVAA 301 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+DIP +V D RS IGR R Sbjct: 302 RGIDIPLLPVVVNYD-----LPRSPVDYTHRIGRTGR 333 >gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major] Length = 631 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + YL + + +H + + ER + D R GK V+V ++ Sbjct: 450 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVATSVAA 509 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D K+ + IGR R N+ Sbjct: 510 RGLDIPDVQHVVNFDLPKD-----IDEYVHRIGRTGRCGNT 545 >gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata] Length = 410 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 269 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 369 >gi|242065864|ref|XP_002454221.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor] gi|241934052|gb|EES07197.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor] Length = 573 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 +D+ L R I+ +H ++ L R +++ + G+F VLV L GLD+PEC LV Sbjct: 446 KDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVV 505 Query: 656 ILD 658 LD Sbjct: 506 NLD 508 >gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 1450 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++L+ ++L EG+D+ C LV DA +++ S IQ GR AR S Sbjct: 459 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDA-----IKNLRSFIQRRGR-ARKERS 512 Query: 685 KVILYADT 692 K +++ D+ Sbjct: 513 KFVMFLDS 520 >gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO 3956] gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO 3956] Length = 1180 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 59/324 (18%), Positives = 134/324 (41%), Gaps = 25/324 (7%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q A +++ + I S ++ QL+ GV+GS KT +A + + P +V+ + +L ++ Sbjct: 9 QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 +N + V F P + + ++ + R A +LL Sbjct: 68 LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV+ + + + + + +++G ++ + + L+ Y+RQ + + G F + Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G ++I+ + R+ +F +++ + F + + + N+ + I + ++ P Sbjct: 175 RGSIVDIYALNTAH-PVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 L +K EL+ L + E Q L + L+ + Y+ + Sbjct: 234 LAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y+P S L +D+ Sbjct: 289 ----EQPASLLDYLPAKSNLVLDD 308 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +R+ L E + E R+ Y+H ++ E ++ D G++DVLV +++ G+DI Sbjct: 842 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 899 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + DAD+ G L Q GR R+ Sbjct: 900 NTLFVEDADRLGL----AQLYQIRGRIGRS 925 >gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B] gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141] gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B] Length = 524 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 G+ + + D + S + IGR R S Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336 >gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens] Length = 412 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 271 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 325 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 326 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 371 >gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus] Length = 411 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 668 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L +N +H + ER + R G+ +LV + G Sbjct: 449 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 508 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 509 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 544 >gi|126666523|ref|ZP_01737501.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17] gi|126628911|gb|EAZ99530.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17] Length = 691 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 545 VEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 +E I+ P G D VE +R+A Y L + VL + AE L Sbjct: 458 IETIVVPDGRRDDVVERVRNACQAGRQAYWVCTLIEES------EVLQCQAAEVSATELA 511 Query: 604 ER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 ER N+R+ +H +K+ E+ E++ + G D+LV ++ G+D+P L+ I + ++ Sbjct: 512 ERLPNLRIGLVHGRLKSQEKAEVMAQFKSGALDLLVATTVIEVGVDVPNASLIIIENPER 571 Query: 662 EGFLRSKTSLIQTIGRAARNVNSK--VILY 689 G L Q GR R + V++Y Sbjct: 572 LGL----AQLHQLRGRVGRGEQASYCVLMY 597 >gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State Length = 413 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211] gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211] Length = 539 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G D+LV ++ GLDI Sbjct: 269 TKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDI-- 326 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 327 SGVTHVYNYD---IPQDPESYVHRIGRTGR 353 >gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens F0305] gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM 10105] gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens F0305] gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM 10105] Length = 1206 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 16/177 (9%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEY-FVSYYDYYQPEAYVPRTDTYIEKESSIN 252 RP +++ P+ A + ++++ N + + ++ E PR DT ++ S + Sbjct: 72 RPVVMVVPSGRDAEDMVGSIRSWYRGNPADVDMIPAWETLPHERLSPRADTVAQRMSVFH 131 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 R+ H S L IVV V + GI +E V ++G ++ + Sbjct: 132 ----RLAHPVEGSDLFGPLKIVVVPVRSLIQPVVRGIQDMEP-----VVFQVGQEMDLSQ 182 Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 LV+ Y D+ + RG F + G ++IFP R+ FG++I+ I F+ Sbjct: 183 AADRLVENAYTCADLVMDRGEFALRGGILDIFPPTAPHPV-RIDFFGDEIDSIKPFH 238 >gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 233 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 287 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 288 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 333 >gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis] gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis] Length = 759 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + +H +++ ER +++ R G F+VL+ N+ GLDIPE LV + A KE Sbjct: 458 AKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA----- 512 Query: 669 TSLIQTIGRAARNVNSKVIL 688 + + GR R + V + Sbjct: 513 DAYVHRSGRTGRAGRTGVCI 532 >gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis] gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B; Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B; AltName: Full=ATP-dependent RNA helicase DDX48-B; AltName: Full=ATP-dependent RNA helicase eIF4A-3-B; AltName: Full=DEAD box protein 48-B; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3-B gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus laevis] Length = 414 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 273 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 327 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 328 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 373 >gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis] Length = 415 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374 >gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus] gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus] Length = 412 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 271 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 325 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 326 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 371 >gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis SK150] Length = 1167 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E ++ +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225 Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] Length = 555 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 11/135 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K + + L ++I MHS++ ER +I+ + G+ DVLV +++ Sbjct: 247 RVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQLDVLVATDIVS 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 G+DI + +V D D E + + IGR AR V + +++ Q Sbjct: 307 RGIDIDDITMVINYDVPHDTEDY-------VHRIGRTARADRDGVAIT--LVSEEDQFYF 357 Query: 702 DETTRRREKQLEHNK 716 +T + EK+++ NK Sbjct: 358 QQTEKFLEKEIQKNK 372 >gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum 28-3-CHN] gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum 28-3-CHN] Length = 1180 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 59/324 (18%), Positives = 134/324 (41%), Gaps = 25/324 (7%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q A +++ + I S ++ QL+ GV+GS KT +A + + P +V+ + +L ++ Sbjct: 9 QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 +N + V F P + + ++ + R A +LL Sbjct: 68 LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV+ + + + + + +++G ++ + + L+ Y+RQ + + G F + Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 G ++I+ + R+ +F +++ + F + + + N+ + I + ++ P Sbjct: 175 RGSIVDIYALNTAHPV-RIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451 L +K EL+ L + E Q L + L+ + Y+ + Sbjct: 234 LAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288 Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475 E P +L +Y+P S L +D+ Sbjct: 289 ----EQPASLLDYLPAKSNLVLDD 308 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +R+ L E + E R+ Y+H ++ E ++ D G++DVLV +++ G+DI Sbjct: 842 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 899 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + DAD+ G L Q GR R+ Sbjct: 900 NTLFVEDADRLGL----AQLYQIRGRIGRS 925 >gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51866] gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51866] Length = 1218 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 V + +G+ +EL+ SLV + Y R D+ RG F V G I+IFP+ + RV +G Sbjct: 134 VTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPV-RVEFWG 192 Query: 355 NDIEEISEF 363 +++ EI+ F Sbjct: 193 DEVTEITTF 201 >gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct] Length = 412 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49] Length = 1167 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E ++ +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSNR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225 Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72] Length = 1167 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908 Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927 >gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14] Length = 1157 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 28/173 (16%) Query: 518 WNCLRPTTIV----------VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 W+ P IV + T GS EL + I EQI+ ++D + + Sbjct: 937 WSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKI--EQIVE---VMDDHQKYNALVAH 991 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 + +YD G RI+L TKR A++L+ L + +H ER +++D Sbjct: 992 LRVIYD--------GGRIILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKD 1043 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + GK +LV ++ GLDI + V D K + I IGR AR Sbjct: 1044 FKQGKTQILVATDVASRGLDIKDIRYVINFDMPK-----NVEDYIHRIGRTAR 1091 >gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium glucuronolyticum ATCC 51867] Length = 1218 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 V + +G+ +EL+ SLV + Y R D+ RG F V G I+IFP+ + RV +G Sbjct: 134 VTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPV-RVEFWG 192 Query: 355 NDIEEISEF 363 +++ EI+ F Sbjct: 193 DEVTEITTF 201 >gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis] Length = 415 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374 >gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar] gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar] gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar] Length = 406 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 320 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 365 >gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis] gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis] Length = 415 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374 >gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS] gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1 Length = 659 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L +N +H + ER + R G+ +LV + G Sbjct: 440 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 499 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 500 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 535 >gi|146279547|ref|YP_001169705.1| transposase, IS4 family protein [Rhodobacter sphaeroides ATCC 17025] gi|145557788|gb|ABP72400.1| transposase, IS4 family [Rhodobacter sphaeroides ATCC 17025] Length = 956 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R AE + + + +R +HS + R + L G+ D+L +++ EG+D+P G Sbjct: 494 RHAEFMAAFFQAQGLRAVAVHSGPGSAPRATSLDRLGRGEIDILFAVDMFNEGVDVPNIG 553 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 V +L + L +Q +GR R V K++ D I Sbjct: 554 TVMMLRPTESVIL-----WLQQLGRGLRRVEGKLLRVIDYI 589 >gi|46136549|ref|XP_389966.1| hypothetical protein FG09790.1 [Gibberella zeae PH-1] Length = 657 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +LT+ + RY+ E +ER + + R G+F VLV + EG DIP V + Sbjct: 309 ELTDRFRQHGFDARYVTGETPKVERGQTLDSFRKGEFPVLVNCGVFTEGTDIPNIDCVIL 368 Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680 RS+ L+Q IGR R Sbjct: 369 GRP-----TRSRNLLVQMIGRGMR 387 >gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] Length = 499 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++L Sbjct: 303 FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVNIL 362 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 363 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 409 >gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar sotto str. T04001] gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar sotto str. T04001] Length = 510 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 230 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 287 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 344 Query: 710 KQLE 713 ++E Sbjct: 345 DRME 348 >gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori] Length = 601 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%) Query: 561 IRSARTQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 + A T VE ++ E+ + G RIL+ V TKR A+ + L E+ + Sbjct: 399 VGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT 458 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 +H + ER E +++ + GK +LV + GLDI +V D K S Sbjct: 459 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-----SID 513 Query: 670 SLIQTIGRAARNVN-SKVILYADT 692 + IGR R N K + + D+ Sbjct: 514 EYVHRIGRTGRVGNRGKAVSFYDS 537 >gi|191638602|ref|YP_001987768.1| ATP-dependent DNA helicase RecG [Lactobacillus casei BL23] gi|190712904|emb|CAQ66910.1| ATP-dependent DNA helicase, RecG [Lactobacillus casei BL23] Length = 679 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H ++K E+ +I+R GK VLV ++ G+DIP ++AI DAD+ G Sbjct: 502 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGL---- 557 Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R ++ +L AD Sbjct: 558 SQLHQLRGRVGRGQKAAQCLLIAD 581 Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V + Y + Q L + VL ++ LT+ + +++ + Sbjct: 283 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 342 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 T +R E++ +LR G+ ++++G + L+++G+D GLV I Sbjct: 343 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 382 >gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis] gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis] Length = 407 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I++D R Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFR 320 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ GLD+ + LV D ++ I IGR+ R Sbjct: 321 AGQSRVLISTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366 >gi|332849251|ref|XP_001160875.2| PREDICTED: eukaryotic initiation factor 4A-III-like, partial [Pan troglodytes] Length = 309 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 168 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 222 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 223 SGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 268 >gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546] gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546] Length = 1153 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 38/296 (12%) Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 G+ +A++ + ++ P+ A +L E + F H V+ + ++ Y Sbjct: 26 GASLAIAIAELADRHGSHTLLAVPDPQTALKLQQEIEQFTGHE-----VALFPDWETLPY 80 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQ 296 D++ + I+++I R+ T++ I + VS + S + Q + Sbjct: 81 ----DSFSPHQEIISDRISRLYQLPTQT-----SGITIVPVSTLLQRQSPRDFLLQHTLM 131 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 +K+GD ++L L K Y+ D G + G +++FP D +R+ F ++ Sbjct: 132 VKVGDLFSLEKLRLQLEKSGYRNVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDFFDDE 190 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 I+ I F P + I + + I++ + PT +A++ + + R Sbjct: 191 IDTIRTFDPENQRSIEDTKEIRLLPAHEF----PTSESAIEDFRIRWRQRF--------- 237 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EA+R + + M + G+ + Y + L E TLF YIP+DSLL Sbjct: 238 -EARREPESVY----MQVSKGTWPAGIEYWQPLFF----EHTETLFNYIPDDSLLL 284 >gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL 8301] Length = 1112 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 15/226 (6%) Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 A+ +L + +R L + G +F A + + +A ++ AA L ++F N Sbjct: 17 ALGRLCREYKNRSATVHLEELVGGALSFYAAAAVAESGGVHVFVAEDRDAAAYLLNDFYN 76 Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275 V +F S + R+ Y +++ Q H A R+ + +V Sbjct: 77 LLDERQVYFFPSSW---------KRSAAYGAEDAQGVVQRTATMH-AVRNFSGKGYLVVC 126 Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + + + E+ + + +++GD + + L +LV + R D G + V G Sbjct: 127 TCPEALAERVADAEALQRETITVRVGDRISIEVLEQALVDASFTRVDFVYEPGQYSVRGG 186 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIRNVETI 377 +++F S+ E +R+ FG++++ I F L+ ++ VE I Sbjct: 187 IVDVF-SYSESKPYRLDFFGDEVDSIRRFNISSQLSSDRLERVEII 231 Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVE 569 R LRF R +++ + P + + E+IIR VE AR QV Sbjct: 716 RTLRFSLMGS-RDLSVISTPPPNRQPILTESHVFSEEIIRDA------VEAELARGGQVY 768 Query: 570 DVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 V++ + +L A QGL +T L + RV H ++ + ++I D Sbjct: 769 FVHNRVEDLPALQGL---ITRLCPKA-------------RVAVGHGKMPAEQLEKLIMDF 812 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+FDVLV ++ G+DIP + + +A G + L Q GR R+ N K Sbjct: 813 IYGEFDVLVSTTIVENGIDIPNANTIIVDNAQNFGL----SDLHQLRGRVGRS-NQKGYC 867 Query: 689 Y 689 Y Sbjct: 868 Y 868 >gi|270007520|gb|EFA03968.1| hypothetical protein TcasGA2_TC014113 [Tribolium castaneum] Length = 482 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 341 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFR 395 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 396 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 433 >gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana] Length = 726 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L ++G++ L+ +K+ A+ L L +N+ +H + +R E++RD + G ++L Sbjct: 550 LTEKEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFKSGHRNIL 609 Query: 637 VGINLLREGLDIPECGLV 654 V + GLDI GLV Sbjct: 610 VATAVAARGLDIKGVGLV 627 >gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+] gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+] Length = 694 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L +N +H + ER + R GK +L Sbjct: 449 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 508 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 509 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 553 >gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str. Silveira] Length = 666 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L +N +H + ER + R G+ +LV + G Sbjct: 447 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 506 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 507 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 542 >gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major] Length = 631 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + YL + + +H + + ER + D R GK V+V ++ Sbjct: 450 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVATSVAA 509 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D K+ + IGR R N+ Sbjct: 510 RGLDIPDVQHVVNFDLPKD-----IDEYVHRIGRTGRCGNT 545 >gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 683 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RI++ V TKR A+ + YL I + +V +R++++RD G VLVG ++ Sbjct: 299 RIIVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAA 358 Query: 644 EGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 GL IP+ V D D E + + IGR AR Sbjct: 359 RGLHIPDVTHVVNYDLPEDPEDY-------VHRIGRTAR 390 >gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272] gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272] Length = 1010 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 79/149 (53%), Gaps = 9/149 (6%) Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G F + G ++I+P E++ +R+ F +++ I F + E++K + ++ Sbjct: 6 GEFSLRGGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFL 64 Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446 + L +K+++E L + +L + L+ LE +++++EML+ + QSIE Sbjct: 65 FSQEELKLGIKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMF 118 Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 +YL+ + P +L +Y+PED ++ +DE Sbjct: 119 KYLSIFY--KEPASLIDYLPEDGVVILDE 145 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV Y H ++ E ++ G+ DVLV ++ G+DIP + + DAD+ G Sbjct: 692 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 750 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 751 ---SQLYQLRGRVGRS 763 >gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius] Length = 406 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 320 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 365 >gi|186683736|ref|YP_001866932.1| type III restriction enzyme, res subunit [Nostoc punctiforme PCC 73102] gi|186466188|gb|ACC81989.1| type III restriction enzyme, res subunit [Nostoc punctiforme PCC 73102] Length = 541 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 +I L LRIL+ +L + A++ T Y + + + + + ER EI+ Sbjct: 315 DIALGTDGKLRILINLLAEHYPARILIFTADNATVYRISQELLIPAITHQTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R GK++ LV ++L EG+D+P + IL G R T + I R N + Sbjct: 375 TKFREGKYNTLVASHVLNEGVDVPAATVAIILSGT--GSAREYTQRLGRILRKGNIENKQ 432 Query: 686 VILY 689 ILY Sbjct: 433 AILY 436 >gi|226226331|ref|YP_002760437.1| primosomal protein N' [Gemmatimonas aurantiaca T-27] gi|226089522|dbj|BAH37967.1| primosomal protein N' [Gemmatimonas aurantiaca T-27] Length = 767 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRP---AIVMAPNKI 204 PS Q AAIA +L G +V LL G+TGSGKT +V+ A +Q+P AIV+ P Sbjct: 212 PSASQRAAIAAILAG--DPGQVFLLHGITGSGKTLVYIEVLRAVLQQPGRTAIVLVPEIA 269 Query: 205 LAAQLYSEFKNFF 217 L +Q F+ F Sbjct: 270 LTSQTVDRFRGAF 282 >gi|51892522|ref|YP_075213.1| ATP-dependent DNA helicase RecG [Symbiobacterium thermophilum IAM 14863] gi|51856211|dbj|BAD40369.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 709 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 26/199 (13%) Query: 514 RFEEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQII-------RPTGLVDPPVEIRSAR 565 R ++ + P T+V++ATP L G + +I RP G P SAR Sbjct: 421 RLQQKGEVMPDTLVMTATPIPRTLALTLYGDLDVSVIDELPPGRRPVGTYWRP---ESAR 477 Query: 566 TQVEDVYDEINL-AAQQGLRI--LLTVLTKRMAEDLTEYLYER------NIRVRYMHSEV 616 QV D + A +QG + L+ K A+ TE+ YER ++R+ +H + Sbjct: 478 RQVYDHLMRTEVPAGRQGYVVCPLIEESDKLQAQAATEW-YERLKAQYPDVRLGLLHGRL 536 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676 + E+ ++ R G+ VLV ++ G+D+P ++ I AD+ G L Q G Sbjct: 537 RPAEKEAVMEAFRAGEIQVLVTTTVIEVGVDVPNATMMIIEGADRFGL----AQLHQLRG 592 Query: 677 RAARNVN-SKVILYADTIT 694 R R + S +L AD T Sbjct: 593 RVGRGSHQSYCVLIADPKT 611 >gi|289167442|ref|YP_003445711.1| branch migration of Holliday junctions, junction-specific DNA helicase,ATP-dependent DNA helicase, recG homolog [Streptococcus mitis B6] gi|288907009|emb|CBJ21843.1| branch migration of Holliday junctions, junction-specific DNA helicase,ATP-dependent DNA helicase, recG homolog [Streptococcus mitis B6] Length = 671 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM 20603] Length = 657 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%) Query: 558 PVEIRSAR-----TQVEDVYDEINLAAQQG--LRILLT---------VLTKRMAEDLTEY 601 PVEI AR T ++ Y + + G R+L T T+ AE++ Sbjct: 248 PVEIAVARQSTTVTAIDQEYAVVPFRHKTGSLYRVLATSDVEAAIVFCRTRGAAEEVGAA 307 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L ER + + +V +R +I+ LR G+ DVLV ++ GLD+ GLV D Sbjct: 308 LIERGVSAATISGDVPQKDREKIVERLRNGQLDVLVATDVAARGLDVDRIGLVVNFDIPG 367 Query: 662 EGFLRSKTSLIQTIGRAAR 680 E + + IGR R Sbjct: 368 E-----PEAYVHRIGRTGR 381 >gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A; Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName: Full=ATP-dependent RNA helicase DDX48-A; AltName: Full=ATP-dependent RNA helicase eIF4A-3-A; AltName: Full=DEAD box protein 48-A; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 A gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis] Length = 415 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374 >gi|307705414|ref|ZP_07642271.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597] gi|307621013|gb|EFO00093.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597] Length = 671 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 9/116 (7%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT Y + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAY-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ---LAIDETT 705 + I+DAD+ G + L Q GR R + S +L A+ T S + L + ETT Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDSGKDRMLIMTETT 594 >gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135] gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135] Length = 424 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 19/155 (12%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +QQ R+++ +K +++T+ L + V MHS+++ +R EI+ + R + D+LV Sbjct: 241 SQQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRIDILVA 300 Query: 639 INLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 +++ G+DI + LV D D E + + IGR AR N + Sbjct: 301 TDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGCAI-------- 345 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731 + ET + R KQ+E +I V E++ E Sbjct: 346 --TFVSETEQTRFKQIETFLGKDIYKLPVPEELGE 378 >gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis] Length = 644 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 521 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 522 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 557 >gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa NIES-843] gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa NIES-843] Length = 1160 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 33/189 (17%) Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 E + Q +G +E K L +L + Y+R + G + GD ++IFP E + Sbjct: 134 EVFEQYSDNFAVGRVIEAKNLDLTLARLGYERVSLVETEGQWSRRGDIVDIFPVSAE-LP 192 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL-NTAMKYIKEELKMR 406 R+ FG+++E++ EF P T + + ++ + + S P+L T Y++ E Sbjct: 193 VRLEFFGDELEKLREFDPATQRSLDSIPNLLLTPTSFAAMIAPSLPPTVADYLEAE---- 248 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 E EK + + +E+ + L+ R P +L +Y+P Sbjct: 249 --EREKLANGIYPEGIERFLG---------------------LSFRQPA----SLLDYLP 281 Query: 467 EDSLLFVDE 475 E++L+ DE Sbjct: 282 ENTLIAFDE 290 >gi|111023475|ref|YP_706447.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110823005|gb|ABG98289.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 752 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++RV +H + E+ ++RD G DVLV ++ G+D+P ++ I+DAD+ G Sbjct: 568 DLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVIVDADRFGV- 626 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R Sbjct: 627 ---SQLHQLRGRVGRG 639 >gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus gattii WM276] gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative [Cryptococcus gattii WM276] Length = 537 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +Q+ ++L+ V TKR+A+DLT++L +H + + ER ++ + + G+ +++ Sbjct: 352 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 411 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + G V D F + I IGR R Sbjct: 412 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 448 >gi|315925837|ref|ZP_07922044.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263] gi|315620946|gb|EFV00920.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263] Length = 679 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+ + ++ Y Y+ RV +H ++K E+ ++ D GK D LV +++ G+D+P Sbjct: 486 TQTVCREVDRY-YKGLYRVACLHGKMKPDEKAAVVVDFSAGKIDCLVATSIIEVGIDVPN 544 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ ++ AD+ G + L Q GR R Sbjct: 545 VTMMVVMSADRFGL----SQLHQLRGRVGRG 571 >gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1178 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 65/321 (20%), Positives = 135/321 (42%), Gaps = 25/321 (7%) Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 I +L + +EK QL+ G+TGS + + V A +RP + + N A +LY + + Sbjct: 14 IRAVLNSLDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + + + P + + S + ++ R A L+ IV+ Sbjct: 74 MEADRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120 Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335 V+ + + V + + + G+ ++ + L LV Y + G F V G Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPEVLRQQLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395 I+I+P E+ R+ +F +++ + F T + VE ++ + + + Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQSYYPDI 239 Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 + +++++ + L EL EKE + + + E LE S + + +Y+ P Sbjct: 240 VNRLEKKMMLTLNELKEKEDK-------QALVENLEEELEMLRSGVKPDMFFKYIGLAYP 292 Query: 455 GEPPPTLFEYIPEDSLLFVDE 475 P +LF+Y P+++ + +DE Sbjct: 293 D--PASLFDYFPKNTAILLDE 311 Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + RV H ++ E +I G+FDVLV ++ G+DIP + + DAD+ G Sbjct: 859 DARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917 Query: 666 RSKTSLIQTIGRAAR 680 + L Q GR R Sbjct: 918 ---SQLYQLRGRVGR 929 >gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1182 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFF---PHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 A RP +++ + A ++ ++++ P++ + + ++ E PR DT + Sbjct: 63 AGTRPVVLVVASGREAEEMVEAIRSWYSGDPNDVAQ--LEAWETLPHERLSPRADTVASR 120 Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIG 300 + R+ H S L I+V V + G+G VE +SQ G Sbjct: 121 MAVFR----RLMHPQEGSKLFGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQ-------G 169 Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360 + + E LV+ Y R D+ + RG F V G I++FP L R+ FG++I+ I Sbjct: 170 EELALDEASHRLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTI 228 Query: 361 SEFY 364 EF+ Sbjct: 229 KEFH 232 >gi|116333593|ref|YP_795120.1| RecG-like helicase [Lactobacillus brevis ATCC 367] gi|116098940|gb|ABJ64089.1| ATP-dependent DNA helicase RecG [Lactobacillus brevis ATCC 367] Length = 677 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 +E +V +H +K E+ I+ + +F VLV ++ G+D+P L+ I DAD Sbjct: 494 FEPTYKVGLLHGRMKDDEKNAIMAAFKANEFQVLVATTVIEVGVDVPNATLMMIYDADHF 553 Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETT 705 G L Q GR R S IL AD QLAI+ T Sbjct: 554 GL----AQLHQLRGRVGRGTRASACILIADPKN---QLAIERMT 590 >gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis] gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis] Length = 801 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 558 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D D E ++ +T + +G A N K Sbjct: 618 LDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDK 661 >gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1169 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 57/305 (18%), Positives = 127/305 (41%), Gaps = 29/305 (9%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++G+ + +A +A + +++ + +L S+ + + V F + D Sbjct: 30 QLIMGLSGASRALAIASAYQANEEKVVIITSTQNEVEKLASDLSSLIGEDKVYTFFAD-D 88 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 E D + ++N D+ +++ ++ S V + + ++Y Sbjct: 89 VAAAEFIFASMDKAHSRLEALNFLQDK----------KQSGILITSLVGTRVLLPNPKTY 138 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 S+ + +G+ +++ L Y++ + G F GD ++I+ D +R+ Sbjct: 139 SESQLNFIVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIYEI-TADYPYRL 197 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 FG++++ I +F T + + NVE + IY + A + + Sbjct: 198 EFFGDEVDGIRQFDAQTQKSLSNVEQVTIYPADELILSEEDFARASQAFE---------- 247 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 R LE + +Q+ Y E+ T ++ R+L+ E TL +YIP+ + Sbjct: 248 ----RYLETAKDDQQ-AYLSELYAATQEQYRHQDIRRFLSLFFAKE--WTLLDYIPKGTP 300 Query: 471 LFVDE 475 +F D+ Sbjct: 301 VFFDD 305 >gi|90085300|dbj|BAE91391.1| unnamed protein product [Macaca fascicularis] Length = 406 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 70 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 120 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 202 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 252 >gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 248 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 302 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 303 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 348 >gi|321466548|gb|EFX77543.1| hypothetical protein DAPPUDRAFT_321368 [Daphnia pulex] Length = 581 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 585 ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +L+ V TK A++L TE +Y+ I V +H+E L+R +++ R G+ VL+ L+ Sbjct: 386 VLVFVQTKERAKELYTELVYD-GINVDVIHAERSQLQRDNVVKSFRSGQIWVLICTELMG 444 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D LV D F S S I IGR R Sbjct: 445 RGIDFKGVNLVVNYD-----FPPSAISYIHRIGRTGR 476 >gi|297668722|ref|XP_002812573.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced helicase C domain-containing protein 1-like [Pongo abelii] Length = 1025 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 880 Query: 737 LLEDAATTNISI 748 ++E T SI Sbjct: 881 IMEKKMKTKRSI 892 >gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9) [Streptococcus sp. C300] gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9) [Streptococcus sp. C300] Length = 449 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|114052719|ref|NP_001040588.1| interferon-induced helicase C domain-containing protein 1 [Macaca mulatta] gi|113201795|gb|ABI33114.1| melanoma differentiation associated protein-5 [Macaca mulatta] Length = 1025 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 880 Query: 737 LLEDAATTNISI 748 ++E T SI Sbjct: 881 IMEKKMKTKRSI 892 >gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus] gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus] Length = 411 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH + ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 325 SGASRVLISTDIWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370 >gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis SK1056] Length = 1167 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ S+ + + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908 Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927 >gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum] Length = 788 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 4/145 (2%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL + V +H ++K ER + + R G +LV + G Sbjct: 556 LVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFEREKHLETFRSGVAPILVATAVAARG 615 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 LDIP V D +D + ++ +T + +G A N K A + + I A Sbjct: 616 LDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARDLAELIVEAN 675 Query: 702 DETTRRREKQLEHNKKHNINPQSVK 726 E EK +++ P VK Sbjct: 676 QELPEWLEKLSSDAQRYGSRPGRVK 700 >gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III-like [Ailuropoda melanoleuca] Length = 417 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 276 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 330 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 331 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 376 >gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis] Length = 727 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + +H +++ ER +++ R G F+VL+ N+ GLDIPE LV + A KE Sbjct: 426 AKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA----- 480 Query: 669 TSLIQTIGRAARNVNSKVIL 688 + + GR R + V + Sbjct: 481 DAYVHRSGRTGRAGRTGVCI 500 >gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes] gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes] Length = 617 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 435 RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVAS 494 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 495 RGLDIPDVQHVVNFD-----LPNTIDDYVHRIGRTGRCGNT 530 >gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii] gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii] Length = 613 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 IL+ V TKR A+ L ++L + I +H + +ER +R R G +LV ++ Sbjct: 417 ILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPILVATDVAAR 476 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDIP + +++ D + I GRA ++ Sbjct: 477 GLDIPH--VAHVINYDLPSDIDDYVHRIGRTGRAGKS 511 >gi|227534888|ref|ZP_03964937.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187644|gb|EEI67711.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 698 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H ++K E+ +I+R GK VLV ++ G+DIP ++AI DAD+ G Sbjct: 521 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGL---- 576 Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R ++ +L AD Sbjct: 577 SQLHQLRGRVGRGQKAAQCLLIAD 600 Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V + Y + Q L + VL ++ LT+ + +++ + Sbjct: 302 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 361 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 T +R E++ +LR G+ ++++G + L+++G+D GLV I Sbjct: 362 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 401 >gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis] Length = 643 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 S R Q+ D+ + R ++ V TKR A+ + +L + + +H + + ER Sbjct: 445 SKREQLHDLLKTTGME-----RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQRERE 499 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 + + D R GK VLV ++ GLDIP+ V D + + IGR R Sbjct: 500 QALTDFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCG 554 Query: 683 NS 684 N+ Sbjct: 555 NT 556 >gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis] Length = 640 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 458 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 517 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 518 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 553 >gi|226365976|ref|YP_002783759.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4] gi|226244466|dbj|BAH54814.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4] Length = 752 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++RV +H + E+ ++RD G DVLV ++ G+D+P ++ I+DAD+ G Sbjct: 568 DLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVIVDADRFGV- 626 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R Sbjct: 627 ---SQLHQLRGRVGRG 639 >gi|195611596|gb|ACG27628.1| EMB1586 [Zea mays] gi|223946723|gb|ACN27445.1| unknown [Zea mays] Length = 573 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 +D+ L R I+ +H ++ L R +++ + G+F VLV L GLD+PEC LV Sbjct: 445 KDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVV 504 Query: 656 ILD 658 LD Sbjct: 505 NLD 507 >gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi] gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi] Length = 799 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 561 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 620 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D D E ++ +T + +G A N K Sbjct: 621 LDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDK 664 >gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842] gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 200] gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis Bt407] gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842] gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis Bt407] gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 200] gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 529 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT] gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT] Length = 1143 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 65/323 (20%), Positives = 128/323 (39%), Gaps = 47/323 (14%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY-- 228 +LL V + +A+++ VM P+ + +A +F F V +F + Sbjct: 15 KLLGNVLQGADSLVIAEIVRRYDGLIFVMTPD-VKSAVCLEKFLTEFTQQPVTFFPDWET 73 Query: 229 --YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285 YD + P +++I R SA L N I ++ ++ + + Sbjct: 74 LPYDNFSP-----------------HQEIISARLSALFQLQHSNKGIFIAPITTVMQRVC 116 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 E ++ +K GD + + L Y+ + + G F V G +++FP Sbjct: 117 PAEFLQHNVLLIKRGDRLNIERFRLQLENAGYRAVEQVLEHGEFAVRGALLDLFPMG-SA 175 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 V +R+ F ++I+ I F T + + ++ I + + PT + + + + + Sbjct: 176 VPFRLDFFDDEIDSIRTFDVDTQRTLEEIQRINLLPAQEF----PTDRKGIDFFRSQFRE 231 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 E+ + + + + Q+I + G+ S Y + L TLF+YI Sbjct: 232 TFAEIRR-----DPEHIYQQI--------SKGTLVSGIEYWQPLFFNQMA----TLFDYI 274 Query: 466 PEDSLLFVDESHVTIPQISGMYR 488 P D+ LFVD + +PQ Y+ Sbjct: 275 P-DNTLFVDFEQI-MPQAERFYQ 295 >gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp. MED92] gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp. MED92] Length = 1150 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/204 (18%), Positives = 85/204 (41%), Gaps = 10/204 (4%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 V G+ ++ + +V+ + + A +L E F + +S+ P+ Sbjct: 21 VHGAATGLLISDATKRFDGFTLVITKDTLEANRLLDEVNFFSADEKIGEILSF-----PD 75 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 + DT+ + I+E+I + + +N ++ + ++ + + Sbjct: 76 WEILPYDTFSPHQDIISERISTLNRLPSL----KNGILIAPLSTLMHRTAPADFIAGNCF 131 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +KIGD++ L L Y + + G + + G I++FP+ E +R+ +F N Sbjct: 132 DIKIGDTINPDALRKQLTDAGYHAVETVLEHGEYAIRGSIIDLFPTGSEH-PFRIELFDN 190 Query: 356 DIEEISEFYPLTGQKIRNVETIKI 379 +IE + F P + + I +E I + Sbjct: 191 EIETLRTFDPESQRSIEKIEAINL 214 >gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 4222] gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 4222] Length = 521 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|332234337|ref|XP_003266368.1| PREDICTED: interferon-induced helicase C domain-containing protein 1 [Nomascus leucogenys] Length = 976 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 721 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 774 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 775 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 831 Query: 737 LLEDAATTNISI 748 ++E T SI Sbjct: 832 IMEKKMKTKRSI 843 >gi|168484888|ref|ZP_02709833.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC1873-00] gi|172041962|gb|EDT50008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC1873-00] Length = 671 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|258514450|ref|YP_003190672.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM 771] gi|257778155|gb|ACV62049.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM 771] Length = 692 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + V +H +K+ + E++ RLG+ D LV ++ G+D+P ++ ILDAD+ G Sbjct: 509 DFSVGLLHGRMKSELKEEVMTKFRLGEIDALVTTTVIEVGVDVPNATVMVILDADRFGL- 567 Query: 666 RSKTSLIQTIGRAARNV-NSKVILYADTIT 694 L Q GR R + S IL A+ T Sbjct: 568 ---AQLHQLRGRVGRGLEQSYCILVANPKT 594 >gi|315127929|ref|YP_004069932.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913] gi|315016442|gb|ADT69780.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913] Length = 673 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 50/247 (20%) Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 L+ +DE H R H++ +L E G R C P +V++ Sbjct: 373 LIIIDEQH----------RFGVHQRLSLREKG-RFGDCY--------------PHQLVMT 407 Query: 530 ATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAA-QQGLRI 585 ATP L +E + P G P + T+ +D+ + LA +QG ++ Sbjct: 408 ATPIPRTLAMTAYADLETSVIDELPPGRT-PITTVAIPDTRRDDIISRVKLACNEQGRQV 466 Query: 586 LLT--------VLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 VL + AED L E L E NI + +H +K E+ I+ + + G Sbjct: 467 YWVCTLIDESEVLQCQAAEDSALQLKEALPELNIGL--VHGRMKATEKQAIMSEFKTGNI 524 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYAD 691 VLV ++ G+D+P L+ I + ++ G L Q GR R + V+LY Sbjct: 525 HVLVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYHA 580 Query: 692 TITKSIQ 698 ++ + Q Sbjct: 581 PLSHTAQ 587 >gi|298492538|ref|YP_003722715.1| type III restriction protein res subunit ['Nostoc azollae' 0708] gi|298234456|gb|ADI65592.1| type III restriction protein res subunit ['Nostoc azollae' 0708] Length = 479 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 16/127 (12%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LRIL+ +L + A++ T Y +++ + + + ER EI+ Sbjct: 315 EIALGTDGKLRILMDLLAEHYPARVLIFTADNATVYRISQDLLIPAITHQTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV- 682 + G+++ LV ++L EG+D+P + IL S IQ +GR R N+ Sbjct: 375 TKFKEGEYNTLVASHVLNEGVDVPAASIAIILSGTG-----SAREYIQRLGRVLRKGNIE 429 Query: 683 NSKVILY 689 N + ILY Sbjct: 430 NKQAILY 436 >gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC 43184] gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC 43184] Length = 427 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K ++L L V MHS+++ +R E++++ + G+ D+LV +++ Sbjct: 246 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVS 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI + LV D D E + + IGR AR N + Sbjct: 306 RGIDINDIKLVINFDIPHDPEDY-------VHRIGRTARGTNGE 342 >gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21] gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 540 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +Q+ ++L+ V TKR+A+DLT++L +H + + ER ++ + + G+ +++ Sbjct: 353 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 412 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + G V D F + I IGR R Sbjct: 413 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 449 >gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 527 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 +Q+ ++L+ V TKR+A+DLT++L +H + + ER ++ + + G+ +++ Sbjct: 340 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 399 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + G V D F + I IGR R Sbjct: 400 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 436 >gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489] gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489] Length = 1113 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 24/242 (9%) Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 I EK L G+TGS +F +++ + P +V+ +K AA + N +E Sbjct: 23 IAKNEKNTTLTGLTGSALSFVISETFKEADTPFLVVFSDKEEAA---------YHLNDLE 73 Query: 224 YFVSYYD-YYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSS 277 V D + P +Y R I++ + N E ++R+ +LL V Sbjct: 74 QLVGEKDVLFYPGSY--RRPYQIDEVDNANVLLRAEVLNRINSRKKPALL------VTYP 125 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + + + + +++K+ D++ L L + ++KR D G F V G ++ Sbjct: 126 DALFEKVVTRKELDKNTLKIKVDDTITLDFLNEVLFEYKFKRVDFVTEPGEFSVRGGIVD 185 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 +F S DV +R+ FG++++ I F T V I I N T + +K Sbjct: 186 VF-SFSNDVPYRIEFFGDEVDSIRTFDVETQLSTDKVTKITIVPNVENKFLDETRESFLK 244 Query: 398 YI 399 YI Sbjct: 245 YI 246 >gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS 21A-A] gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS 21A-A] Length = 567 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K+ + +T L ++NI+ MHS++ +R +++ + + DVLV +++ Sbjct: 247 RVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVATDIVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 G+DI + +V D D E ++ +T+ G A V+ + I Y I ++ Sbjct: 307 RGIDIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSEEDIYYFRHIESFLKK 366 Query: 700 AIDETTRRREKQLEHNKKHNINPQSVK 726 ID+ + K L K+N N ++V+ Sbjct: 367 TIDK--KPLPKSLGEGPKYNFNSKAVR 391 >gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404] gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404] Length = 399 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD NL Q + + TK LT+ + ++N V MH ++K ER I+ D R Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERESIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + I IGR+ R Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358 >gi|154147577|ref|NP_001093664.1| interferon-induced helicase C domain-containing protein 1 [Sus scrofa] gi|152148442|gb|ABS29718.1| melanoma differentiation associated protein-5 [Sus scrofa] Length = 1023 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 767 EQREVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 820 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 R S +L A + + I+ R + ++ N+ P+ KI+E+ Sbjct: 821 RADESTYVLVAQSGSGVIERETVNDFREKMMYKAIDRVQNMKPEEYAHKILEL 873 >gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori] gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori] Length = 539 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY------MHSEVKTLERIEIIRD 627 EI + + G + ++ V TKR AE+++ RNIR RY MH + ER E++ Sbjct: 348 EIGQSQEPGAKTIIFVETKRKAENIS-----RNIR-RYGWPAVCMHGDKTQQERDEVLYQ 401 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 + G+ +LV ++ GLD+ G+ +++ D + S I IGR R+ SK Sbjct: 402 FKEGRASILVATDVAARGLDVD--GIKYVINFD---YPNSSEDYIHRIGRTGRS-KSKGT 455 Query: 688 LYA 690 YA Sbjct: 456 SYA 458 >gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis ATCC 15703] gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis ATCC 15703] Length = 1188 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 32/163 (19%) Query: 222 VEYFVSYYD-----YYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 VE S+YD Q EA+ PR DT + + R++H S L Sbjct: 88 VESIRSWYDGDPNDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPEEGSTLF 143 Query: 269 RNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 I+V V + G+G VE +SQ G+ + E LV+ Y R D Sbjct: 144 GPIRILVMPVRSLIQPVVAGLGDVEPLVFSQ-------GEELLLDEASRKLVENAYTRVD 196 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + + RG F V G I++FP L R+ FG++I+ I EF+ Sbjct: 197 LVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTIREFH 238 >gi|116495097|ref|YP_806831.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334] gi|116105247|gb|ABJ70389.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334] gi|327382643|gb|AEA54119.1| DNA helicase RecG [Lactobacillus casei LC2W] gi|327385837|gb|AEA57311.1| DNA helicase RecG [Lactobacillus casei BD-II] Length = 718 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H ++K E+ +I+R GK VLV ++ G+DIP ++AI DAD+ G Sbjct: 541 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGL---- 596 Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R ++ +L AD Sbjct: 597 SQLHQLRGRVGRGQKAAQCLLIAD 620 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V + Y + Q L + VL ++ LT+ + +++ + Sbjct: 322 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 T +R E++ +LR G+ ++++G + L+++G+D GLV I Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 421 >gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii] gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii] Length = 653 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ TK E+L ++L + +V +H + R+++++ + G+F VLV ++ Sbjct: 431 VLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAAR 490 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDI V D K+ + + +GR R + + + Y K + A D Sbjct: 491 GLDIKSIKTVVNYDTAKD-----MDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAGD 543 >gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU045] Length = 1166 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 91/181 (50%), Gaps = 15/181 (8%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 ++ I +F T + N+ ++I S Y+ + +++++ ELK + E + ++ Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIIT----DEVIQHLQNELK-KAYEYTRP-KI 249 Query: 417 LEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 ++ R + + TY+ ++ E+T Q + + ++ E P TL +Y +++++ VD Sbjct: 250 EKSVRNDLKETYESFKLFESTFFDHQLLRRFVSFMY-----EKPSTLIDYFQKNAIIVVD 304 Query: 475 E 475 E Sbjct: 305 E 305 >gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy] Length = 653 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 472 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 531 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 532 RGLDIPDVQHVVNFD-----LPSNIDEYVHRIGRTGRCGNT 567 >gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii] Length = 640 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + YL + + +H + + ER + + D R GK VLV ++ Sbjct: 456 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 515 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLD+P+ V D + + IGR R N+ Sbjct: 516 RGLDVPDVLNVVSFD-----LPNNIDEYVHRIGRTGRCGNT 551 >gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus] Length = 657 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 10/122 (8%) Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 S R Q+ D+ L A R ++ V TKR A+ + +L + I +H + + ER Sbjct: 457 SKREQLVDL-----LKATGSERTMVFVETKRQADFIATFLSQTKIPTTSIHGDREQRERE 511 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 + + D R GK VLV ++ GLDIP+ V D + + IGR R Sbjct: 512 QALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCG 566 Query: 683 NS 684 N+ Sbjct: 567 NT 568 >gi|46484671|gb|AAS98242.1| excinuclease ABC subunit B [Listonella anguillarum] Length = 110 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 22/109 (20%) Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK---- 757 DET RRREKQ HN++ I PQ++K + ++++ L D + +Q+ LSK Sbjct: 1 DETDRRREKQQAHNEEQGITPQALKRNVKDIME---LGDITKSKQQRMNKQVPLSKVAES 57 Query: 758 ------------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794 +K A L+ L M+ A NL FE AA RD+I++L+ Sbjct: 58 SQTYEIFTPLQLEKEIAKLEGL---MYKHAQNLEFELAAEKRDQIEKLR 103 >gi|268573086|ref|XP_002641520.1| Hypothetical protein CBG09816 [Caenorhabditis briggsae] Length = 628 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL +N +V +H ++K ER + + R G +LV + G Sbjct: 424 LVFVETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 483 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 484 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 527 >gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori] gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori] Length = 601 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%) Query: 561 IRSARTQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 + A T VE ++ E+ + G RIL+ V TKR A+ + L E+ + Sbjct: 399 VGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT 458 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 +H + ER E +++ + GK +LV + GLDI +V D K S Sbjct: 459 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-----SID 513 Query: 670 SLIQTIGRAARNVN-SKVILYADT 692 + IGR R N K + + D+ Sbjct: 514 EYVHRIGRTGRVGNRGKAVSFYDS 537 >gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus] gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus] Length = 389 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 248 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 302 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 303 SGASRVLISTDVWAGGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 348 >gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 15912] gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 15912] Length = 523 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|291444983|ref|ZP_06584373.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998] gi|291347930|gb|EFE74834.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998] Length = 944 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ V D++ +R L ++ A + ++ + + E ER Sbjct: 442 ARLVVQAVKDKVT--DPDSMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPAHERKA 499 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + DLR G V+ ++L EGLDIP+ + +L S T +Q +GR R Sbjct: 500 ALDDLRSGALQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 554 Query: 684 SKVIL 688 K +L Sbjct: 555 DKAVL 559 >gi|291165177|gb|ADD81193.1| vasa [Auxis rochei] Length = 627 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 447 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 506 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 507 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 542 >gi|238852577|ref|ZP_04642987.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4] gi|238834723|gb|EEQ26950.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4] Length = 679 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL L Y ++ V +H ++K ++ EI+ GK D+LV +++ G+D+P Sbjct: 488 AEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNAN 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572 >gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC 14931] gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC 14931] Length = 1180 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/237 (17%), Positives = 103/237 (43%), Gaps = 16/237 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q A +++ + I S ++ QL+ GV+GS KT +A + + P +V+ + +L ++ Sbjct: 9 QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 +N + V F P + + ++ + R A +LL Sbjct: 68 LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114 Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV+ + + + + + +++G ++ + + L+ Y+RQ + + G F + Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G ++I+ + R+ +F +++ + F + + + N+ + I + ++ P Sbjct: 175 RGSIVDIYALNTAH-PVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAP 230 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +R+ L E + E R+ Y+H ++ E ++ D G++DVLV +++ G+DI Sbjct: 842 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 899 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + DAD+ G L Q GR R+ Sbjct: 900 NTLFVEDADRLGL----AQLYQIRGRIGRS 925 >gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC 33209] gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC 33209] Length = 1278 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 18/160 (11%) Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L + + + P +AV F S+ + E PR+DT + S + R++H + Sbjct: 151 LVAALRAYLPEDAVADFPSW-ETLPHELLSPRSDTVGRRLSVLR----RLKHGGMGTTGP 205 Query: 269 RNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 IVV+ V + G+ +E V+L IG +++ L Y R D+ Sbjct: 206 LR--IVVAPVRAVVQPIVQGLADLEP-----VELSIGQRAPFDQVIRRLADAAYARVDMV 258 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 RG F V G I++FP + R+ FG+++E + F Sbjct: 259 THRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWF 297 >gi|313889481|ref|ZP_07823128.1| putative ComF operon protein 1 [Streptococcus pseudoporcinus SPIN 20026] gi|313122151|gb|EFR45243.1| putative ComF operon protein 1 [Streptococcus pseudoporcinus SPIN 20026] Length = 433 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N ++ Y+ S+ T +R E+I D R G +LV +L G+ P + +L L Sbjct: 327 NHQIGYVSSQ--TAKRKELIEDFRQGSLSILVTTTILERGVTFPGVDVFVVLAHHH---L 381 Query: 666 RSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDE 703 + +SLIQ GR R++ N KVI + + ++ ++ A E Sbjct: 382 FTSSSLIQIAGRVGRSIDRPNGKVIFFHEGVSSAMYKARKE 422 >gi|239941537|ref|ZP_04693474.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998] Length = 1045 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ V D++ +R L ++ A + ++ + + E ER Sbjct: 543 ARLVVQAVKDKVT--DPDSMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPAHERKA 600 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + DLR G V+ ++L EGLDIP+ + +L S T +Q +GR R Sbjct: 601 ALDDLRSGALQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 655 Query: 684 SKVIL 688 K +L Sbjct: 656 DKAVL 660 >gi|116513187|ref|YP_812094.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris SK11] gi|116108841|gb|ABJ73981.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris SK11] Length = 681 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ +H ++K E+ +I+++ + K D+LV ++ G+D+P ++ I+DAD+ G Sbjct: 512 KIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGL--- 568 Query: 668 KTSLIQTIGRAARNV-NSKVILYAD 691 + L Q GR R S IL A+ Sbjct: 569 -SQLHQLRGRVGRGTKKSYAILVAN 592 >gi|257870553|ref|ZP_05650206.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2] gi|257804717|gb|EEV33539.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2] Length = 681 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 19/154 (12%) Query: 551 PTGLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLT--------VLTKRMAEDLTEY 601 P G + PVE R R Q+E V D +G ++ + +L + A ++ E Sbjct: 436 PAGRI--PVETRWVRPPQLESVLDWARQELAKGHQMYVICPLIEESEMLDVKNATEIYEQ 493 Query: 602 L---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 L + N +V +H ++K +E+ EI+ + + + +LV ++ G+++P ++ I+D Sbjct: 494 LQAYFAPNYQVGILHGKMKNIEKDEIMEEFKDNQLQILVSTTVIEVGVNVPNATVMLIID 553 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691 AD+ G L Q GR R + S IL A+ Sbjct: 554 ADRFGL----AQLHQLRGRVGRGADASYCILVAN 583 >gi|242243744|ref|ZP_04798188.1| helicase [Staphylococcus epidermidis W23144] gi|242232842|gb|EES35154.1| helicase [Staphylococcus epidermidis W23144] Length = 949 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +VE + + N G L+ L+ V ++ A L L +R I + + Sbjct: 427 ASNERVEHIIKKTNYYGYSGDALKGLIFVSSREEAYQLANQLSKRGISSVGLTGKDSIAY 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I+ L+ G + ++ ++L EG+DIPE V +L K + IQ +GR R Sbjct: 487 RTETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 541 Query: 681 NVNSK 685 N+K Sbjct: 542 KSNNK 546 >gi|149730873|ref|XP_001494380.1| PREDICTED: similar to interferon induced with helicase C domain 1 [Equus caballus] Length = 1022 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 24/185 (12%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYMH-------SEVKTL---ERIEII 625 ++ R ++ T++ A L++++ E + V+ H SE K + E+ E+I Sbjct: 712 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 771 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR AR S Sbjct: 772 SKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-ARADEST 825 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAAT 743 +L A + + ++ + REK + H N+ P+ KI E+ ++E Sbjct: 826 YVLVAHSGSGVVER--ETVNAFREKMMYKAIDHVQNMKPEEYAHKIWELQMQSIMEKKMK 883 Query: 744 TNISI 748 T SI Sbjct: 884 TKRSI 888 >gi|145224791|ref|YP_001135469.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK] gi|145217277|gb|ABP46681.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK] Length = 753 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ MH + E+ ++ R G DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 572 GVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 630 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + L Q GR R + + L A + +S Sbjct: 631 ---SQLHQLRGRIGRGEHPSLCLLATNLPES 658 >gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239] gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239] Length = 523 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 15/146 (10%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E+V I A +GL I+ T TKR + L + L R +H ++ R +R Sbjct: 271 EEVVARILQAKNRGLTIIFT-RTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAF 329 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687 R GK DVLV ++ G+D+ + V + ++ + + I IGR AR +S + Sbjct: 330 RHGKVDVLVATDVAARGIDVDDVTHVINFECPED-----EKTYIHRIGRTARAGHSGTAV 384 Query: 688 LYAD--------TITKSIQLAIDETT 705 + D I ++++L ++ T Sbjct: 385 TFVDWESVTRWRVINRALELGLENPT 410 >gi|296202918|ref|XP_002748670.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2 [Callithrix jacchus] Length = 661 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 405 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 455 >gi|296202916|ref|XP_002748669.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1 [Callithrix jacchus] Length = 678 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 422 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 472 >gi|257462680|ref|ZP_05627089.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12] gi|317060328|ref|ZP_07924813.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12] gi|313686004|gb|EFS22839.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12] Length = 680 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 17/122 (13%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K++ E L++Y NI + +H +K+ E+ EI+R + + D+LV ++ G+D+P Sbjct: 494 KKIREKLSDY----NISI--LHGRMKSAEKEEIMRQFQQKEIDILVSTTVIEVGIDVPNA 547 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711 ++ IL+A++ G ++L Q GR R NS + + T+ +E++++R K Sbjct: 548 VIMTILNAERFGL----SALHQLRGRVGRG-NSASFCFLISKTQ------NESSKQRLKI 596 Query: 712 LE 713 +E Sbjct: 597 ME 598 >gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] Length = 1381 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 +I+ D R G ++LV ++L EG+D+P C LVA D + S IQ GR AR Sbjct: 432 QILEDFRSGVVNLLVATSVLEEGIDVPACNLVACFDETT-----TLKSFIQRRGR-ARMQ 485 Query: 683 NSKVILYADTITKSIQL-AIDETTRRR 708 SK+I ++T S ++E +RR Sbjct: 486 ESKMIAMESSLTSSRTWEELEEGMKRR 512 >gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 10876] gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 10876] Length = 528 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|116629428|ref|YP_814600.1| RecG-like helicase [Lactobacillus gasseri ATCC 33323] gi|116095010|gb|ABJ60162.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri ATCC 33323] Length = 679 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL L Y ++ V +H ++K ++ EI+ GK D+LV +++ G+D+P Sbjct: 488 AEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNAN 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572 >gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] Length = 530 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 22/167 (13%) Query: 558 PVEI--RSARTQVEDVYDEINLAAQQGLRILLT--------------VLTKRMAEDLTEY 601 PVE+ ++A T E++ L A LLT V TK+ E+L E Sbjct: 208 PVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEPFSAMIVFVRTKQATEELAER 267 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L R R ++ ++ R + LR GK D+LV ++ GLD+ V DA Sbjct: 268 LRARGFAARPLNGDIPQAARERTVSALREGKIDILVATDVAARGLDVERITHVFNYDAPH 327 Query: 662 EGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTRR 707 + S + IGR R + V L+ +S+ AI+ TR+ Sbjct: 328 D-----TESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIERATRQ 369 >gi|306829933|ref|ZP_07463120.1| DNA helicase RecG [Streptococcus mitis ATCC 6249] gi|304427944|gb|EFM31037.1| DNA helicase RecG [Streptococcus mitis ATCC 6249] Length = 671 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|315445121|ref|YP_004078000.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1] gi|315263424|gb|ADU00166.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1] Length = 753 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ MH + E+ ++ R G DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 572 GVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 630 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + L Q GR R + + L A + +S Sbjct: 631 ---SQLHQLRGRIGRGEHPSLCLLATNLPES 658 >gi|309361539|emb|CAP29366.2| CBR-LAF-1 protein [Caenorhabditis briggsae AF16] Length = 653 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL +N +V +H ++K ER + + R G +LV + G Sbjct: 449 LVFVETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 508 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 509 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 552 >gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis OX99.30304] Length = 1292 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT N A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227 Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 983 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1039 Query: 668 KTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 1040 -AQLHQLRGRVGRS 1052 >gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273] gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272] gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272] gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273] Length = 530 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243] gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1] gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus mulieris FB024-16] gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243] gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1] gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus mulieris FB024-16] Length = 523 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 15/146 (10%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E+V I A +GL I+ T TKR + L + L R +H ++ R +R Sbjct: 271 EEVVARILQAKNRGLTIIFT-RTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAF 329 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687 R GK DVLV ++ G+D+ + V + ++ + + I IGR AR +S + Sbjct: 330 RHGKVDVLVATDVAARGIDVDDVTHVINFECPED-----EKTYIHRIGRTARAGHSGTAV 384 Query: 688 LYAD--------TITKSIQLAIDETT 705 + D I ++++L ++ T Sbjct: 385 TFVDWESVTRWRVINRALELGLENPT 410 >gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC 43183] gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC 43183] Length = 430 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 A Q R+++ +K +++ + L + + V MHS+++ +R E++ + + G+ ++L Sbjct: 239 FAEQTPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V +++ G+DI + LV D D E + + IGR AR N V L Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|145613028|ref|XP_362776.2| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15] gi|145020089|gb|EDK04317.1| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15] Length = 584 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ L K+ A + L + IRV +H ++K +R + + GK VLV ++ Sbjct: 422 RVLVFCLYKKEAVRVENNLQRKGIRVASIHGDLKQEQRTASLEAFKSGKTTVLVATDVAA 481 Query: 644 EGLDIPECGLV 654 GLDIPE LV Sbjct: 482 RGLDIPEVKLV 492 >gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937] gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937] Length = 1149 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 64/303 (21%), Positives = 128/303 (42%), Gaps = 38/303 (12%) Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 Q LLG +TG+ A+++E +++ P+ A +L E + F Sbjct: 16 QRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQF------------- 62 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288 QP +P +T S +++I R S L +++ V+ + + E Sbjct: 63 -TAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHE 121 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + LK G + + +L + L + Y+ D + G F G +++FP E+ + Sbjct: 122 FLHGHALMLKKGQRLSRDKLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PF 180 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ F ++I+ + F T + + VE I + + PT TA++ + + + + Sbjct: 181 RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREF----PTDKTAIELFRSQWREQF- 235 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 E+ ++ A+ + Q+++ G+ + Y + L +P P LF Y+P D Sbjct: 236 EVRRD-----AEHVYQQVS--------KGTLPAGIEYWQPLFF---SQPLPALFSYLPTD 279 Query: 469 SLL 471 +LL Sbjct: 280 TLL 282 >gi|297273051|ref|XP_002800519.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 2 [Macaca mulatta] Length = 661 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 405 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 455 >gi|227528966|ref|ZP_03959015.1| helicase [Lactobacillus vaginalis ATCC 49540] gi|227351103|gb|EEJ41394.1| helicase [Lactobacillus vaginalis ATCC 49540] Length = 451 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/77 (23%), Positives = 40/77 (51%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 G + +L +++ + + + + I+ + S+ ER I+ D + GK +L ++ Sbjct: 214 NGRKTILYAHSRKYSAQIAQKFCDAGIKAVHCDSKTPAKERETIMSDFKAGKIKILCNVD 273 Query: 641 LLREGLDIPECGLVAIL 657 L+ EG ++P+C V +L Sbjct: 274 LISEGFNVPDCSCVVML 290 >gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC 51100] gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC 51100] Length = 1167 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 47/233 (20%), Positives = 100/233 (42%), Gaps = 20/233 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++ S K +A +E Q +V+ ++ A +L S+ + V F++ Sbjct: 30 QLVMGLSASTKALAIASSLEE-QEKILVITSSQNEAERLASDLISLLGEEKVYTFLA--- 85 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 P + + I +++ M + + E+N ++++ + + + + Sbjct: 86 -----DDTPLAEFVFSSQEKIFARLEAMNFLSDK---EKNGILIINVAASRLLLPQPDIF 137 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + + L + +L+ SL + YK+ + +G + + GD ++IF + +R+ Sbjct: 138 KKSELILSVSKEYNLDKLVKSLSRNGYKKVSQVLSQGEYSLRGDILDIFERSAQ-YPYRI 196 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI-------YANSHYVTPRPTLNTAM 396 FG++I+ I F P + NVE I I + Y R L TA+ Sbjct: 197 EFFGDEIDGIRIFNPENQLSLENVEEILIEPVTDLLFTEEDYAKGRKNLETAL 249 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + I +AD G Sbjct: 853 IGYVHGQMSEVRLENTLLDFVNGEYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parasanguinis F0405] gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parasanguinis F0405] Length = 536 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis RH4] gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis RH4] Length = 577 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ TK E L L E + RY+H ++ +R I+ D++ GK D+LV ++ G Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVATDVAARG 321 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 +DI V D R + IGR R + V + +I + QL Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370 >gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM 20098] gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM 20098] Length = 1198 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + G+G VE +V +K G+ + E + LV+ Y R D+ + RG F V G +++F Sbjct: 170 VVAGLGDVEP----LVFVK-GEELPLDEAVERLVRNAYTRVDLVMNRGEFAVRGGILDVF 224 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFY 364 P R+ FG++I+EI EF+ Sbjct: 225 PPTYPHPV-RIEFFGDEIDEIREFH 248 >gi|297459091|ref|XP_001788313.2| PREDICTED: Fanconi anemia, complementation group M [Bos taurus] Length = 1449 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + +++ E L +R M H+ K++ E++E+++ R G + Sbjct: 83 RVMIFSSFRDSVQEIAEMLLPHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 142 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S LIQ +GR R ++++ Sbjct: 143 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 192 >gi|158259343|dbj|BAF85630.1| unnamed protein product [Homo sapiens] Length = 1025 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTCVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876 >gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii] gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii] Length = 653 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ TK E+L ++L + +V +H + R+++++ + G+F VLV ++ Sbjct: 431 VLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAAR 490 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDI V D K+ + + +GR R + + + Y K + A D Sbjct: 491 GLDIKSIKTVVNYDTAKD-----MDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAGD 543 >gi|291556783|emb|CBL33900.1| transcription-repair coupling factor [Eubacterium siraeum V10Sc8a] Length = 1175 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 15/218 (6%) Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 I S E V LL+ G++ K +A + E + P +V+ ++ AA+L + A Sbjct: 21 ILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTA 80 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 F P + + DT + + ++I+ + + +L + I+ SS + + Sbjct: 81 AYQF--------PASDMTLADTEAQSQEYEYKRIETL----SAALSGKARLIISSSEAAV 128 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + V LK GD ++ EL +LV Y R D+ +G F G +I+P Sbjct: 129 QLTVPKDVLKKHTVTLKAGDEIKLDELAKTLVSAGYTRCDMIEGKGQFSFRGSLADIYPV 188 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D R+ ++G++I+ ++ F T ++I V+++ I Sbjct: 189 S-SDYPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSI 225 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A D+ + E NI + H + E +++ R L G+ DVLV L+ G+D+P C + Sbjct: 842 AADIHSMVPEANIGI--AHGRMSEEELLDVWRRLIEGEIDVLVCTTLIETGVDVPNCNTL 899 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681 I +AD G L Q GR R Sbjct: 900 IIENADCMGL----AQLHQLRGRVGRT 922 >gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens] Length = 793 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D I + + G I+ T TKR A+D+ + R + +H ++ +R + + R G Sbjct: 378 DLIAVYGKGGKTIVFT-QTKRDADDVATAMA-RTLGCEALHGDISQSQREKTLNAFREGN 435 Query: 633 FDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILY 689 F VLV ++ GLDIP LV + D E F+ RS + GRA ++ + +++Y Sbjct: 436 FSVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRT-----GRAGKD-GTAILMY 489 Query: 690 ADTITKSIQL 699 +D T++++L Sbjct: 490 SDRQTRTMRL 499 >gi|296171354|ref|ZP_06852710.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894185|gb|EFG73943.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 739 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 11/105 (10%) Query: 599 TEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 E LY R N+R+ MH + ++ + R G+ DVLV ++ G+D+P Sbjct: 544 AEGLYARLRSGELANLRLGLMHGRLSAEQKDAAMAAFRAGEIDVLVCTTVIEVGVDVPNA 603 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 ++ ++DAD+ G + L Q GR R + + L A ++ + Sbjct: 604 TVMLVMDADRFGI----SQLHQLRGRIGRGRHPSLCLLASWVSPA 644 >gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287] gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287] Length = 1109 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 25/234 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G+ G+ + +A V +RP +V+ P+K +A L ++ + + + SY YQ Sbjct: 31 GLAGASLSLLIANVYTNTKRPLLVLLPDKEESAYLLNDLETLIGEQVLFFPDSYRRPYQ- 89 Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288 IE + N E ++R+ +S IVVS ++ + + + Sbjct: 90 ----------IEDTDNANVLLRAEVLNRLSNSG-------QPLIVVSYPEALFEKVITRK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 Q +++ GD + + L L + R D G F V G +++F S + + Sbjct: 133 QLEQSTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIVDVF-SFSNNEPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 R+ FGN++E I F T + I I N + ++YI E+ Sbjct: 192 RIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLEYISEQ 245 >gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus suis GZ1] Length = 502 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + DVLV ++ GLDI Sbjct: 236 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDI-- 293 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R S + I + I++ T++R Sbjct: 294 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRM 350 Query: 710 KQLE 713 K L+ Sbjct: 351 KGLK 354 >gi|282900744|ref|ZP_06308686.1| Type III restriction enzyme, res subunit [Cylindrospermopsis raciborskii CS-505] gi|281194544|gb|EFA69499.1| Type III restriction enzyme, res subunit [Cylindrospermopsis raciborskii CS-505] Length = 513 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L +R+L +L A++ T Y R + + + + ER EI+ Sbjct: 315 EIALGTDGKMRVLADLLADHYPEMVLIFTADNATVYRISRELLIPAITHQTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 + G ++ LV ++L EG+D+P + IL G +R T + I R N + Sbjct: 375 TKFKQGIYNTLVASHVLNEGVDVPAAAVAIILSG--TGSIREYTQRLGRILRKGNQENKR 432 Query: 686 VILY 689 ILY Sbjct: 433 AILY 436 >gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9303] gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9303] Length = 1193 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 46/309 (14%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF--FPHNAVEYFVSYY 229 L+ G G+ + + RP +V+ P + A +S + HN + Y S Sbjct: 30 LMRGAGRVGRALIASAIARHQSRPLVVIVPT-LEEANRWSSLLALMGWSHNHL-YPTSEG 87 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 Y+P + P T+ + ++E + R+ IV + + + VE+ Sbjct: 88 SPYEP--FDPTTEIVWGQLQVLSELLGESTRRWDRA-------IVATERALQPHLPPVEA 138 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + L G++++ + L S+L K Y R T+ GD ++IFP E + R Sbjct: 139 LASQCEILSRGENIDLESLASTLTKLGYDRVTAVDQEATWSRRGDIVDIFPVSSE-LPVR 197 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP---RPTLNTAMKYIKEELKMR 406 + +FG++++++ EF P+T + + V N +TP P + ++ + R Sbjct: 198 LELFGDELDKLREFDPVTQRSLDEV-------NELCLTPSGFSPLIAHQLRQSMPDGLDR 250 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 L+ E +L E S + R L G + P +L +YIP Sbjct: 251 LVSEETLDQLFEG---------------------STPDGIRRLMGIAWNK-PASLLDYIP 288 Query: 467 EDSLLFVDE 475 +S + +DE Sbjct: 289 ANSFIAIDE 297 >gi|90076976|dbj|BAE88168.1| unnamed protein product [Macaca fascicularis] Length = 488 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 331 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 381 >gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum ATCC 12472] gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum ATCC 12472] Length = 1130 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/199 (20%), Positives = 87/199 (43%), Gaps = 25/199 (12%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKE 248 +RP +++A + A +L +E F P ++ F + YD++ P + Sbjct: 35 RRPLLILAADAQAAQRLKAELPFFAPDLSIALFPDWETLPYDHFSPHGDL---------- 84 Query: 249 SSINEQIDRMRHSATRSLLERNDC-IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQK 306 ++E++ AT + + +C +V++ VS G + V LK G ++ + Sbjct: 85 --VSERL------ATLWQIRQRECQVVIAPVSTALGRLAPVSYLLGRTFFLKTGQQLDVE 136 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366 +L +V Y+ + G F V G I+++P + +R+ +F +I+ + F P Sbjct: 137 KLRGDMVTAGYQHVTQVMAPGEFSVRGSLIDLYPMG-SPLPYRIDLFDAEIDSLKTFDPD 195 Query: 367 TGQKIRNVETIKIYANSHY 385 T + + V +++ Y Sbjct: 196 TQRTLYPVPEVRMLPAREY 214 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 M E L E + E I V H +++ E +++RD +F++L+ ++ G+DIP Sbjct: 814 MREKLAELIPEARIGV--AHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANT 871 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 + I ADK G L Q GR R+ + YA +T D TR +K+LE Sbjct: 872 ILINRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTP------DGMTRDAQKRLE 918 >gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803] gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803] Length = 528 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363 Query: 710 KQLE 713 ++E Sbjct: 364 DRME 367 >gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191] gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191] Length = 502 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 ++L +G L+ T+ E L ++L + + + +H + +R I+D R KFD Sbjct: 234 VSLLRAKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFD 293 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +LV ++ GLDIP LV D LR++ I IGR AR Sbjct: 294 ILVATDVAARGLDIPHIQLVINYDLP----LRAE-DYIHRIGRTAR 334 >gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3] gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3] Length = 1153 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 LKG ++ + L+G S +AK+ E ++ P+ +A +L SE + F Sbjct: 12 LKGAGDKKHIGNLVG---SSLALAIAKLAEQHNSHTVLAVPDPQIALKLQSEIEQF---T 65 Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 A E V+ + ++ Y D++ + I+++I R+ +L D I + +S Sbjct: 66 ASE--VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114 Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 + S + Q + +K GD ++L L K Y+ D G + G +++F Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174 Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397 P +D +R+ F ++I+ I F P + I ++ I++ + PT TA++ Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSETAIE 227 >gi|122936787|dbj|BAF45214.1| transcription-repair coupling factor [uncultured bacterium] Length = 479 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAE LT + N RVR H ++ T E +I+ D G+F +LV ++ G+DIP Sbjct: 160 MAERLTSLI--PNARVRIAHGQMPTRELEQIMSDFYHGRFQILVCTTIIETGIDIPNANT 217 Query: 654 VAILDADKEGF 664 + I +A GF Sbjct: 218 IIINNAQNFGF 228 >gi|109115463|ref|XP_001108799.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 1 [Macaca mulatta] Length = 678 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 422 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 472 >gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] Length = 483 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 19/150 (12%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +D+ L +V MHS+++ ER E++ + + DVLV +++ Sbjct: 246 RVIVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 G+DI + LV D D E + + IGR AR A+ ++I L + Sbjct: 306 RGIDIDDIQLVINFDVPHDAEDY-------VHRIGRTAR---------ANNDGEAITL-V 348 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIME 731 E ++R +EH + I +S+ E + E Sbjct: 349 SEKDQQRFASIEHFLETEIEKRSLPEGLGE 378 >gi|207340598|gb|EDZ68898.1| YPL119Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 303 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 9/112 (8%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+A+ L+ V TKRMA+ LT++L +N + +H + ER + + D+L Sbjct: 92 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 151 Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D +D + + + IGR R N+ V Sbjct: 152 VATAVAARGLDIPNVTHVINYDLPSDIDDY-------VHRIGRTGRAGNTGV 196 >gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01] gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01] Length = 1153 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 63/298 (21%), Positives = 125/298 (41%), Gaps = 38/298 (12%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L + G+ +A++ + ++++ P+ +A +L +E + F + VS + + Sbjct: 21 LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQTVSLFPDW 75 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291 + Y D + + I+E+I R+ L + D I + VS + S + Sbjct: 76 ETLPY----DNFSPHQEIISERIARLYQ-----LPSQRDGITIVPVSTVLQRQSPRDFLL 126 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 Q + +K GD + ++L L Y+ D G + G +++FP D +R+ Sbjct: 127 QHTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSND-PYRID 185 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 F ++I+ I F P + I +++ I++ + PT A++ + + + Sbjct: 186 FFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ----- 236 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 +A+R + I M T G+ + Y + L + TLFEY PEDS Sbjct: 237 -----FDARREPESIY----MQVTKGTWPAGIEYWQPLFFDH----TETLFEYFPEDS 281 Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ AEDL + + E I V + + LERI + D +F+VLV ++ G+D+P Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + AD G L Q GR R+ Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909 >gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222] gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222] Length = 428 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V K E L + LY+R I H + R I+ D + G+ DVL+ ++ G Sbjct: 259 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 318 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LDI + +V D RS + + IGR+ R Sbjct: 319 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 348 >gi|291165179|gb|ADD81194.1| vasa [Auxis thazard] Length = 627 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 448 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 507 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 508 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 543 >gi|146281828|ref|YP_001171981.1| ATP-dependent DNA helicase [Pseudomonas stutzeri A1501] gi|145570033|gb|ABP79139.1| probable ATP-dependent DNA helicase [Pseudomonas stutzeri A1501] Length = 1437 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628 VYD + A + L+ V T+RMAE T +L ER V H + +R+ + L Sbjct: 261 VYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLGGAVVAAHHGSLAREQRLTAEQKL 320 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 + G+ VLV L G+DI + LV L G RS + +Q +GRA V Sbjct: 321 KRGELRVLVATASLELGIDIGDVELVCQL-----GSPRSIAAFLQRVGRAGHQV 369 >gi|50365130|ref|YP_053555.1| DNA repair DNA/RNA helicase [Mesoplasma florum L1] gi|50363686|gb|AAT75671.1| DNA repair DNA/RNA helicase [Mesoplasma florum L1] Length = 905 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ +T A +++ YL +N++ + S+ T +R I+ + G+ + L +N+ EG Sbjct: 440 LIFCVTVEHAINISNYLNSKNLKAEVLTSQ-NTKDRKRILHEFSTGRINYLCVVNIFNEG 498 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +DIPE + +L SKT +Q +GR R Sbjct: 499 VDIPEINTIILLRPT-----NSKTVYLQQLGRGLR 528 >gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes] Length = 411 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ GLD+P+ L+ D L I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELS-----IHRIGRSGR 370 >gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia pulex] Length = 761 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V +K+ A+ + YL +I+ +H + +R E +RDL+ GK +VLV N+ Sbjct: 580 KIIVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQREEALRDLKSGKRNVLVATNVAA 639 Query: 644 EGLDI 648 GLDI Sbjct: 640 RGLDI 644 >gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus] gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus] Length = 766 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L L + +H + + ER E +RD + GK +LV ++ Sbjct: 567 RTLVFVSTKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILVATSVAA 626 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP G+ +++ D + IGR R N Sbjct: 627 RGLDIP--GVKHVVNYD---LPSDIDEYVHRIGRTGRVGN 661 >gi|89632618|gb|ABD77541.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Ictalurus punctatus] Length = 153 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 63 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 117 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ ++ GLD+P+ L+ Sbjct: 118 SGASRVLISTDVWARGLDVPQVSLI 142 >gi|45188175|ref|NP_984398.1| ADR302Wp [Ashbya gossypii ATCC 10895] gi|44983019|gb|AAS52222.1| ADR302Wp [Ashbya gossypii ATCC 10895] Length = 691 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 602 LYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 L++ N I +Y+ ++ + ER I+ D R G +VL+ + EG DIP + + Sbjct: 310 LFQANGIEAQYVTAKTRPTERDSIVEDFRRGDIEVLMNCGIFTEGTDIPNIDCLLLCRPT 369 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK 685 RS+T L+Q IGR R +SK Sbjct: 370 -----RSRTLLVQMIGRGLRQHHSK 389 >gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp. 12_1_47BFAA] gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp. 12_1_47BFAA] Length = 1194 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GSIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|238878821|gb|EEQ42459.1| conserved hypothetical protein [Candida albicans WO-1] Length = 646 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L ++ + RY+ S+ ER I+ D + GKF VL + + EG DIP + + K Sbjct: 294 LQKQGVDARYVTSKTSNSERKTIVEDFKQGKFPVLCNVTVFAEGTDIPNIDSIILARPTK 353 Query: 662 EGFLRSKTSLIQTIGRAAR 680 SK +IQ IGR R Sbjct: 354 -----SKPLMIQMIGRGLR 367 >gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 428 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V K E L + LY+R I H + R I+ D + G+ DVL+ ++ G Sbjct: 259 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 318 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LDI + +V D RS + + IGR+ R Sbjct: 319 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 348 >gi|71023479|ref|XP_761969.1| hypothetical protein UM05822.1 [Ustilago maydis 521] gi|46101534|gb|EAK86767.1| hypothetical protein UM05822.1 [Ustilago maydis 521] Length = 775 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGL 653 ++LT I RY+H ER +++ D R G + VLV +L EG D+P +C L Sbjct: 363 QELTNTFRSAGIDARYLHGGTPMPERRQLLEDFRNGVYPVLVNCAILTEGADVPAIDCVL 422 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680 +A RS+ Q IGR R Sbjct: 423 LARP-------TRSRNLFSQMIGRGLR 442 >gi|242005744|ref|XP_002423722.1| predicted protein [Pediculus humanus corporis] gi|212506907|gb|EEB10984.1| predicted protein [Pediculus humanus corporis] Length = 1130 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V +K A++L L I V +HS+ +R +IR R GK VL+ L+ Sbjct: 1001 VLVFVQSKERAQELFNELVYDGINVDVIHSDRTQKQRDNVIRSFREGKIWVLICTELMGR 1060 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D LV D F S S I IGR R Sbjct: 1061 GIDFKGVNLVVNYD-----FPPSSVSYIHRIGRTGR 1091 >gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM 17244] gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM 17244] Length = 510 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 27/205 (13%) Query: 587 LTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 LT++ TKRM +DLT++L + +H +++ ER ++ + + K +LV ++ Sbjct: 246 LTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAA 305 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID- 702 G+D+ + V D ++ I IGR AR + + T+T + + D Sbjct: 306 RGIDVKDVEYVINYD-----IPQNSEYYIHRIGRTARGGKTGTSI---TMTNNRKQVTDL 357 Query: 703 ----ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758 + T + K+L+ K++IN ++ K+ + +I + E+ + + D + L S+ Sbjct: 358 KMILKETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKDLGYSE- 416 Query: 759 KGKAHLKSLRKQMHLAADNLNFEEA 783 Q+ AA NL F E Sbjct: 417 ----------NQIAKAALNLYFGET 431 >gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia] Length = 475 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L K++ EY L + + RY+H ++K +R I++D R GK + L+ NL Sbjct: 340 VLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTNLASR 399 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + +V D F + I IGR R Sbjct: 400 GLDVSDVDVVINYD-----FPENIEDYIHRIGRTGR 430 >gi|22651415|gb|AAL05260.1| QDE3-like protein [Blumeria graminis] Length = 1632 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%) Query: 581 QGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 +G ++ L+++ ED+ + L E NI V Y H+ +K+ E+ ++ RD + GK V+V Sbjct: 1028 RGQTGIIYTLSRKGCEDMAKKLSKEFNISVHYYHAGMKSEEKTKVTRDWQSGKLQVVVAT 1087 Query: 640 NLLREGLDIPECGLVAILDADK--EGFLRSKTSLIQTIGRAARN 681 G+D P+ V K EG+ Q GRA R+ Sbjct: 1088 IAFGMGIDKPDVRFVIHYTIPKSLEGYY-------QETGRAGRD 1124 >gi|291406113|ref|XP_002719437.1| PREDICTED: DEXH (Asp-Glu-X-His) box polypeptide 58-like [Oryctolagus cuniculus] Length = 678 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV +++ EG+DIP C +V + G L ++ S++Q GRA Sbjct: 422 EVIRRFRAGMLNLLVATSVVEEGMDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 >gi|282850862|ref|ZP_06260236.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri 224-1] gi|282557814|gb|EFB63402.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri 224-1] Length = 401 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL L Y ++ V +H ++K ++ EI+ GK D+LV +++ G+D+P Sbjct: 210 AEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNAN 269 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 270 MMVIFNADRFGL----SQLHQLRGRIGRG 294 >gi|11344594|gb|AAG34368.1|AF095844_1 melanoma differentiation associated protein-5 [Homo sapiens] Length = 1025 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVAHSGSGVIE---HETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876 >gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155] gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155] Length = 1162 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 25/216 (11%) Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315 R+ + S +E+N IV+ V+ + ++Y S + LK GDS + ++ L Sbjct: 96 RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFMLKKGDSYKLHDVRQHLTDT 153 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y + G F + G ++IFP+ + ++ R+ +F ++E I F P T + ++ V+ Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +I++ + PT ++A++ ++ + R + K E + + Q ++ +L Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRNL----- 258 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 IENY + TLF+Y+P+D+ L Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287 >gi|330812027|ref|YP_004356489.1| ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380135|gb|AEA71485.1| Putative ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1437 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612 PPV + + A E VY+ + A + L+ V T+R+AE L+ +L ER + V Sbjct: 249 PPVPLSAVMANDVWELVYNRLAELAGEHRTTLVFVNTRRLAERLSRHLSERLGKDAVAAH 308 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H + R++ + L+ G+ VL+ L G+DI + LV + + RS ++ + Sbjct: 309 HGSLAKEFRLDAEQRLKRGELKVLIATASLELGIDIGDVDLVCQIASP-----RSISAFL 363 Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRREKQLEHNKKHNIN 721 Q +GR+ V K L+A T I+ A+ + RR E + H K ++ Sbjct: 364 QRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPKAPLD 415 >gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13] Length = 555 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LTE L ++ I+ +H ++K ++R +++ + G+ VLV ++ G+D+ Sbjct: 232 TKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNG 291 Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 LV D D E + I IGR R S L Sbjct: 292 IDLVFNYDLPQDNEYY-------IHRIGRTGRAGKSGTAL 324 >gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 468 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V K E L + LY+R I H + R I+ D + G+ DVL+ ++ G Sbjct: 299 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 358 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LDI + +V D RS + + IGR+ R+ Sbjct: 359 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRS 389 >gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] Length = 428 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V K E L + LY+R I H + R I+ D + G+ DVL+ ++ G Sbjct: 259 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 318 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LDI + +V D RS + + IGR+ R Sbjct: 319 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 348 >gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC 6301] gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC 6301] Length = 1153 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 266 LLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 LLE++ IV + S + VE+ L+ G V EL + Y+R D Sbjct: 110 LLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTV 169 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 G + GD I++FP E + R+ +FG+++E + EF P T + + +E +++ S Sbjct: 170 ETEGQWSRRGDIIDLFPVSAE-LPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTS 228 Query: 384 H 384 + Sbjct: 229 Y 229 >gi|323463426|gb|ADX75579.1| putative helicase [Staphylococcus pseudintermedius ED99] Length = 954 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E+I LRLG+ + ++ ++L EG+DIPE V +L A S +Q +GR R Sbjct: 490 RAEVIAQLRLGELNYIITVDLFNEGIDIPEVNQVVMLRATT-----SSIIFVQQLGRGLR 544 Query: 681 NVNSK 685 ++K Sbjct: 545 KSSNK 549 >gi|320547868|ref|ZP_08042151.1| competence protein FA [Streptococcus equinus ATCC 9812] gi|320447408|gb|EFW88168.1| competence protein FA [Streptococcus equinus ATCC 9812] Length = 432 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%) Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT-- 674 KT +R+E++ R + +LV +L G+ P + +L K L +K++L+Q Sbjct: 336 KTEDRLELVEKFRKNEITILVSTTILERGVTFPCVDVFVVLANHK---LYTKSALVQISG 392 Query: 675 -IGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 +GRAA+ +++ D TKS+Q AI E +K Sbjct: 393 RVGRAAKRPTGELLFLHDGATKSMQQAIKEIKEMNKK 429 >gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] Length = 405 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++LV +++ Sbjct: 223 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 282 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V + Sbjct: 283 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAI 322 >gi|300521552|gb|ADK25987.1| ERRC4-type helicase [Candidatus Nitrososphaera gargensis] Length = 740 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ +++ R G+FDVLV ++ EGLDIPE LV + + S+ IQ GR Sbjct: 426 EQAAVLQSFREGEFDVLVATSIAEEGLDIPEVDLVVFYEP-----VPSEIRYIQRRGRTG 480 Query: 680 RNVNSKVILYA--DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737 R V++ A DTI A + RR E+ E N VK +E +P+ Sbjct: 481 RKAAGSVVILAANDTIDTRHLYA---SKRRVERMKESLSSINAVLAPVKRAFLEP-NPVT 536 Query: 738 LEDAAT 743 E+ A Sbjct: 537 AEELAA 542 >gi|332026541|gb|EGI66659.1| Eukaryotic initiation factor 4A-II [Acromyrmex echinatior] Length = 423 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374 >gi|310791197|gb|EFQ26726.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 608 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V +KR A+DL ++LY MHS+ LER +R R GK +L+ + Sbjct: 384 RTIIFVNSKRTADDLDDFLYNIGFPCTSMHSDRTQLEREASMRAFRAGKSPILIATGISA 443 Query: 644 EGLDI 648 G+D+ Sbjct: 444 RGIDV 448 >gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus] Length = 643 Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK V+V ++ Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 522 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 557 >gi|332523021|ref|ZP_08399273.1| putative ComF operon protein 1 [Streptococcus porcinus str. Jelinkova 176] gi|332314285|gb|EGJ27270.1| putative ComF operon protein 1 [Streptococcus porcinus str. Jelinkova 176] Length = 433 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 8/99 (8%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 ++ Y+ S+ T++R E+I + R G+ +LV +L G+ IP + IL L + Sbjct: 329 KIGYVSSQ--TIKRKELIENFRRGELSILVTTTILERGVTIPSVDVFVILAHHH---LFT 383 Query: 668 KTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDE 703 +SLIQ GR R+V+ KVI + + ++ ++ A E Sbjct: 384 SSSLIQIAGRVGRSVDRPTGKVIFFHEGVSSAMYRARKE 422 >gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus] Length = 645 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK V+V ++ Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 522 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 557 >gi|229552461|ref|ZP_04441186.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1] gi|258539832|ref|YP_003174331.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705] gi|229314198|gb|EEN80171.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1] gi|257151508|emb|CAR90480.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705] Length = 679 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V +H ++K E+ +I+R G VLV ++ G+D+P ++AI DAD+ G Sbjct: 501 QVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL--- 557 Query: 668 KTSLIQTIGRAAR-NVNSKVILYAD 691 + L Q GR R N ++ +L AD Sbjct: 558 -SQLHQLRGRVGRGNKAAQCLLIAD 581 >gi|299758408|ref|NP_001177648.1| eukaryotic initiation factor 4a [Tribolium castaneum] Length = 419 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 278 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFR 332 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 333 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 370 >gi|27886568|ref|NP_071451.2| interferon-induced helicase C domain-containing protein 1 [Homo sapiens] gi|134047802|sp|Q9BYX4|IFIH1_HUMAN RecName: Full=Interferon-induced helicase C domain-containing protein 1; AltName: Full=Clinically amyopathic dermatomyositis autoantigen 140 kDa; Short=CADM-140 autoantigen; AltName: Full=Helicase with 2 CARD domains; Short=Helicard; AltName: Full=Interferon-induced with helicase C domain protein 1; AltName: Full=Melanoma differentiation-associated protein 5; Short=MDA-5; AltName: Full=Murabutide down-regulated protein; AltName: Full=RNA helicase-DEAD box protein 116 Length = 1025 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVAHSGSGVIE---HETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876 >gi|126463950|ref|YP_001045063.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105761|gb|ABN78291.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides ATCC 17029] Length = 928 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R AE + + + +R +HS + R + L G+ D+L +++ EG+D+P G Sbjct: 466 RHAEFMATFFQAQGLRAVAVHSGPGSAPRATSLDRLGHGEIDILFAVDMFNEGVDVPNIG 525 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 V +L + L +Q +GR R V K++ D I Sbjct: 526 TVMMLRPTESVIL-----WLQQLGRGLRRVEGKLLRVIDYI 561 >gi|307194191|gb|EFN76608.1| Eukaryotic initiation factor 4A-II [Harpegnathos saltator] Length = 423 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374 >gi|293380322|ref|ZP_06626396.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1] gi|290923137|gb|EFE00066.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1] Length = 678 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%) Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 +P + ++ATP + L + V +I P + +Q+++VY ++ Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462 Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629 QG +I L+T L + AE+L E L N +V +H ++ ++ EI+ Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFA 522 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688 G+ D+LV +++ G+D+ ++ I +AD+ G + L Q GR R S + Sbjct: 523 AGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCVF 578 Query: 689 YADTITKS 696 AD T S Sbjct: 579 LADPKTDS 586 Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V ++ I Q L + +L + + + E L +RV + K Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 TLER EI R+L G +V++G + L+++ + + GLV I Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383 >gi|260880987|ref|ZP_05403342.2| primosomal protein [Mitsuokella multacida DSM 20544] gi|260850126|gb|EEX70133.1| primosomal protein [Mitsuokella multacida DSM 20544] Length = 828 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 152 DQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKILAA 207 DQ +AQ+ I + R + LL GVTGSGKT +A+ + A R IV+ P L Sbjct: 300 DQQQVVAQVYPAIDAARYQGFLLKGVTGSGKTQVYIELAERVRAAGRRVIVLVPEIALTG 359 Query: 208 QLYSEFKNFFPHNAV 222 Q+ FK++FP + V Sbjct: 360 QVVMAFKSYFPDDLV 374 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675 EI+ R G++D+L+G ++ +G DIP V I+ AD + R + QT Sbjct: 625 EILESFRRGEYDILLGTQMVAKGHDIPNVTAVGIISADSSLNMPDFRAAERCFMLITQTA 684 Query: 676 GRAARN 681 GRA R+ Sbjct: 685 GRAGRH 690 >gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC BAA-548] gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC BAA-548] Length = 1098 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 5/140 (3%) Query: 273 IVVSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 +VV SV + E+ + + LK G + ELL LV+ Y + + G F Sbjct: 117 LVVGSVHALLAPAPAPETTVEAQLTLKAGMELPMAELLEKLVRLDYDDEYEATVSGEFAR 176 Query: 332 CGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390 G I+IF P+H D RV FG+ I+ + F P T + VE ++ + +T Sbjct: 177 RGGIIDIFSPAH--DFPCRVEFFGDTIDSLRSFAPETQRSTGAVEEYRVIGRAG-ITAGG 233 Query: 391 TLNTAMKYIKEELKMRLIEL 410 ++ + EE RL+ L Sbjct: 234 AADSDLFAYFEERDYRLLTL 253 >gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622] gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622] Length = 1188 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 20/283 (7%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 D F Q Q D +GD AQ++ + + ++V+ G+ G+ + +A++ A++ P Sbjct: 2 DTPFIQTQ-DGGAAGD---PFAQVVDELRAGQRVRTQ-GLKGAARGHVLARLHGALRAPL 56 Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 + +A ++ A L ++ +FF + +P D +++ E++ Sbjct: 57 VCVAVDEEAADALAAD-LSFFLGGQGSLLAPRVLRLPADEVLP-YDEVSPDAAAVTERLG 114 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 + H + R +V+S + + + + ++ +G ++ L LV+ Sbjct: 115 ALFHLGQGT---RFPALVLSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMG 171 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y+ + GTF V GD +++F S L D R+ FG+ IE I F P Q R V+ Sbjct: 172 YQNSPLVEDVGTFSVRGDLLDVF-SPLYDKPVRLEFFGDTIESIRAFDP---QSQRTVDA 227 Query: 377 IK----IYANSHYVT--PRPTLNTAMKYIKEELKMRLIELEKE 413 +K + A +T RP +A + + + + + I+L ++ Sbjct: 228 LKEVDLVPAREVLLTDETRPRAESAARAVADRINLPTIKLREQ 270 >gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin] gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain Friedlin] Length = 923 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK+MAED+ L+ I +H + + +R + D + +LV ++ Sbjct: 722 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 781 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLDIP+ V D +E + T I GRA Sbjct: 782 GLDIPDVAHVVQFDLPQE--MDDYTHRIGRTGRAG 814 >gi|330834740|ref|YP_004409468.1| type III restriction enzyme, res subunit [Metallosphaera cuprina Ar-4] gi|329566879|gb|AEB94984.1| type III restriction enzyme, res subunit [Metallosphaera cuprina Ar-4] Length = 654 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ + E+K ER++I+ + + G DV++ ++ EG+DIPE L+ + D K S Sbjct: 321 RVKTLTGELKKEERLKIVDEAKRGLVDVIISTHVGEEGIDIPEAKLLIMTDVPK-----S 375 Query: 668 KTSLIQTIGRAARNVNSKVILYADTIT 694 Q +GR R N V T+T Sbjct: 376 PLRFYQRLGRLIRKTNETVKYLVVTLT 402 >gi|326517806|dbj|BAK03821.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 601 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 +D+ L R ++ +H ++ L R +++ + G+F VLV L GLDIPEC LV Sbjct: 473 KDVVFKLEARGMKAIELHGDLGKLARSTVLKKFKAGEFRVLVTNELSARGLDIPECDLVI 532 Query: 656 ILD 658 LD Sbjct: 533 NLD 535 >gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2] gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2] Length = 585 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 24/142 (16%) Query: 556 DPP-VEIRSARTQVEDV----YDEINLAAQQGLRILLT----------VLTKRMAEDLTE 600 DP VEI+SA+ ++ V YD LR+LL+ TK+M ++L + Sbjct: 202 DPVRVEIKSAQRTIDTVEQIYYDAPRGKKANALRVLLSHYDPDLCMIFCNTKKMVDELCD 261 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD-- 658 L + NI+ +H ++K R ++ R G + +L+ ++ G+D+ + LV D Sbjct: 262 ELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPILIATDVAARGIDVDDIDLVVNFDIP 321 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 D E + I +GR R Sbjct: 322 QDNEYY-------IHRVGRTGR 336 >gi|94267559|ref|ZP_01290925.1| Helicase-like [delta proteobacterium MLMS-1] gi|93451953|gb|EAT02669.1| Helicase-like [delta proteobacterium MLMS-1] Length = 522 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 E NL A +G+ +++ + A+ + E +R I S V + E ++ DLR G+ Sbjct: 29 ESNLEAIKGVGFCVSI---KHAQYMAEMFNQRGIAAAAFVSGVDSAECSAMLADLRNGRL 85 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 L ++ L EG+D+P+ +V L + S T +Q +GR R+ K L Sbjct: 86 SFLFTVDKLSEGVDVPDMNVVLFLRPTE-----SLTVFLQQLGRGLRHAPGKDCL 135 >gi|327480065|gb|AEA83375.1| ATP-dependent DNA helicase [Pseudomonas stutzeri DSM 4166] Length = 1450 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612 PPV + + + VYD + A + L+ V T+RMAE T +L ER V Sbjct: 259 PPVPLEAVMSNDAWALVYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLGGAVVAAH 318 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H + +R+ + L+ G+ VLV L G+DI + LV L G RS + + Sbjct: 319 HGSLAREQRLTAEQKLKRGELRVLVATASLELGIDIGDVELVCQL-----GSPRSIAAFL 373 Query: 673 QTIGRAARNV 682 Q +GRA V Sbjct: 374 QRVGRAGHQV 383 >gi|322799953|gb|EFZ21079.1| hypothetical protein SINV_07394 [Solenopsis invicta] Length = 423 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374 >gi|315637410|ref|ZP_07892623.1| primosome assembly protein PriA [Arcobacter butzleri JV22] gi|315478302|gb|EFU69022.1| primosome assembly protein PriA [Arcobacter butzleri JV22] Length = 388 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVL 636 + + G+ L V T ++ E+L ++NI+ R+ E+KT +++ I+ D GK D+L Sbjct: 152 SCKTGIIHNLRVGTAQIEEELKAIFPQKNIK-RFDRDEIKTENQLKTILNDFNSGKIDIL 210 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVIL 688 VG +L +G D L +L D + S + LIQ GR+ R+ +VI+ Sbjct: 211 VGTQMLSKGHDYHNVKLAVVLGIDSVLNMNSYKAREKALSLLIQISGRSGRSGFGEVII 269 >gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger] Length = 491 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPT-----NRENYIHRIGRSGR 357 >gi|110004999|emb|CAK99330.1| hypothetical atp-dependent helicase protein [Spiroplasma citri] Length = 911 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ +T A+ + +L +++R Y+ SE + R I+ + + G+ + L +N+ EG Sbjct: 442 LIFCVTTEHAKLVATFLRTKHLRADYLTSENRD-HRTRILHEFKTGRINYLCIVNMFNEG 500 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +D+PE + +L SKT +Q +GR R Sbjct: 501 IDVPEINTIILLRPTN-----SKTVYLQQLGRGLR 530 >gi|62988819|gb|AAY24206.1| unknown [Homo sapiens] Length = 589 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 334 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 387 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 388 RADESTYVLVAHSGSGVIE---HETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 444 Query: 737 LLEDAATTNISI 748 ++E T +I Sbjct: 445 IMEKKMKTKRNI 456 >gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330] Length = 1126 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 21/211 (9%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI----N 252 IV+ + A +L+ ++ F PH+ F+ ++ E + P D E+ S + N Sbjct: 37 IVLTKDSESAQRLHEAWQFFRPHDNGS-FLPDWETLPYEHFSPHQDLVSERLSVLWQLKN 95 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 +QI+ + ++ + V+ S I G LK+G +V L +L Sbjct: 96 KQINALFLPVATAMQK------VAPTSFILG---------RTFWLKVGQNVNIDTLRENL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E +R+ +F +I+ I F P T + I+ Sbjct: 141 VDAGYSAVSNVVAAGEFAVRGGIVDLFPMGSE-FPYRIDLFDKEIDTIKTFDPETQRTIQ 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 +++ I++ + T T +EE+ Sbjct: 200 SIDEIRLLPAHEFPTDSDTQKIFRSRFREEI 230 Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD KF+VL+ ++ G+DIP + I ADK G Sbjct: 822 RIGVAHGQLRERELEQVMRDFLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 878 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 879 -AQLHQLRGRVGRSHHQAYAYLLTPEFITKDAEKRLD 914 >gi|307189936|gb|EFN74172.1| Eukaryotic initiation factor 4A-II [Camponotus floridanus] Length = 423 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374 >gi|237649235|ref|ZP_04523487.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI 1974] gi|237821995|ref|ZP_04597840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI 1974M2] Length = 671 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein) [Xanthomonas albilineans GPE PC73] gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein) [Xanthomonas albilineans] Length = 657 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ TK ++L + L R + ++ +++ +R +I+ L+ GK D+LV ++ Sbjct: 251 MIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAAR 310 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + + IL+ + + AI+ Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGR--SGEAILFVSPRERGMLRAIE 364 Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVI 733 TR+ ++++ +N Q V E+I E I Sbjct: 365 RATRQPIEEMQLPSVDAVNDQRVSRFMERISETI 398 >gi|168491421|ref|ZP_02715564.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC0288-04] gi|183574121|gb|EDT94649.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC0288-04] Length = 671 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica] Length = 499 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +IL+ TKR ++L + +R +H + ER +++D R G+ VLV ++ Sbjct: 301 KILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAA 360 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDI + G V D F + IGR AR Sbjct: 361 RGLDIDDIGTVINYD-----FPSQLEDYVHRIGRTARG 393 >gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 429 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++LV +++ Sbjct: 246 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V + Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAI 345 >gi|294932985|ref|XP_002780540.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239890474|gb|EER12335.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 525 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RI++ TK+ A+ LT + N +H + + ER I+ D + G+ +VLV ++ + Sbjct: 390 RIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATDVAQ 449 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-IQLAID 702 GLDI V D K + I GRA NS + DT T +++A D Sbjct: 450 RGLDIKNVEWVVNYDMPKT--IEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDRVRMAKD 507 >gi|229496199|ref|ZP_04389919.1| transcription-repair coupling factor [Porphyromonas endodontalis ATCC 35406] gi|229316777|gb|EEN82690.1| transcription-repair coupling factor [Porphyromonas endodontalis ATCC 35406] Length = 1123 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 22/219 (10%) Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILA 206 HPS ++AQ L I + E ++ GVTGS +A + I+ ++P +++A ++ A Sbjct: 22 HPS---IGSLAQTLSSIQTGEAIRYK-GVTGSALAVIVAGLHIQETKQPLLIVANDEESA 77 Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266 LYS+ +V +F S Y ++ T E +E I R Sbjct: 78 GYLYSDLIQILGRESVLFFPSSY-----RRHIRYGHTDAGSEVLRSELIAR--------- 123 Query: 267 LERNDCIVVSS--VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 L DC ++ S + GI + + L++G V++++L + V + + D Sbjct: 124 LSLGDCPIIVSHPFALAEGIPNANEVETHVRSLRVGQEVDRQQLRTWFVDEGFTITDYVY 183 Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 G G ++IF + E R+ F +IE I F Sbjct: 184 QPGEVAFRGSIVDIFAYNAER-PIRLDFFDTEIESIRSF 221 >gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC 7942] gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC 7942] Length = 1153 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 266 LLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 LLE++ IV + S + VE+ L+ G V EL + Y+R D Sbjct: 110 LLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTV 169 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 G + GD I++FP E + R+ +FG+++E + EF P T + + +E +++ S Sbjct: 170 ETEGQWSRRGDIIDLFPVSAE-LPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTS 228 Query: 384 H 384 + Sbjct: 229 Y 229 >gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus DSM 11664] gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus DSM 11664] Length = 1165 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 57/311 (18%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 S+ K L+ G + + +++ + +V+ N+ A +++E V+YF Sbjct: 21 SQVKNSLITGANAGAFSLLLKQIVTEKKVSLLVIEENENKAQNIFNELSGIMDDGQVQYF 80 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGI 284 P T T + ++ +I + LL + +V+++ + Y + Sbjct: 81 --------PVDSTLATQTALASPDELSSRIQTLNF-----LLGQKSGVVITTPQGLQYKL 127 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 +V+ ++ + + E+ L+ Y R+ + G F + GD ++I+P E Sbjct: 128 SAVKDFAAFKREFVQDKEYDLGEMNKWLLAAGYHREALVARPGEFAIRGDILDIYPLDQE 187 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 + R+ FG++++ I EF T + R ++ + + V ++ A IK + Sbjct: 188 N-PVRIEFFGDEVDTIKEFDLSTQRSQREIKRLVVGPAQDRVFSADAISQAAAEIKAAMS 246 Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 E + + + ++ T L+ L G + +L + P +L +Y Sbjct: 247 ------ESKA---DQKAVKDHFTQVLDELNDGGLPSNYAFLIDFLIKK-----PSSLVDY 292 Query: 465 IPEDSLLFVDE 475 + +D LLF+D+ Sbjct: 293 LAKDGLLFLDD 303 >gi|156373178|ref|XP_001629410.1| predicted protein [Nematostella vectensis] gi|156216410|gb|EDO37347.1| predicted protein [Nematostella vectensis] Length = 471 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 24/148 (16%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V +K A++L L I V +HS+ +R I++ R GK VL+ L+ Sbjct: 297 VLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGR 356 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ---- 698 G+D LV D F S + I IGR R + + + T S++ Sbjct: 357 GIDFKGVNLVINYD-----FPTSAVAYIHRIGRTGRAGRTGKAITFFTEEDTTSLRSIAN 411 Query: 699 -------------LAIDETTRRREKQLE 713 L I + +RR +K+LE Sbjct: 412 VIKSSGCDVPDWMLKIKKASRREKKKLE 439 >gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 578 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 6/151 (3%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK++ E+L E L R ++ ++ R I LR G+ D+LV ++ Sbjct: 244 MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDVAAR 303 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703 GLD+ V D + S + IGR R S + IL+ + + +I++ Sbjct: 304 GLDVERISHVLNYDIPHD-----SESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEK 358 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 TR+ Q+E +N Q + + + D Sbjct: 359 ATRQSIGQMELPSIEAVNDQRLAKFAQGITD 389 >gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 926 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK+MAED+ L+ I +H + + +R + D + +LV ++ Sbjct: 726 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 785 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP+ V D +E IGR R N K I A + +LA+D Sbjct: 786 GLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGN-KGIATAFYNRNNRRLALD 837 >gi|218709841|ref|YP_002417462.1| helicase-like protein [Vibrio splendidus LGP32] gi|218322860|emb|CAV19037.1| Helicase-related protein [Vibrio splendidus LGP32] Length = 579 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%) Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L + GF P+ M + P+ +++ LRPT+ G ++ E +++EQ R T Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLRPTST------GRYK-ESELDMVIEQSKRAT---- 237 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 + D+I A+ L I++ T R A+++ L E + + + Sbjct: 238 ------------PQIVDQIIELAKDKLGIMVFAATVRHAQEILGLLPEGEASI--VIGDT 283 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 TLER +II D + K LV +++L G D P L+AIL Sbjct: 284 PTLERDQIISDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324 >gi|148979671|ref|ZP_01815643.1| DNA or RNA helicase [Vibrionales bacterium SWAT-3] gi|145961648|gb|EDK26946.1| DNA or RNA helicase [Vibrionales bacterium SWAT-3] Length = 580 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%) Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L + GF P+ M + P+ +++ L+P A+ G ++ E +++EQ R T Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLKP------ASTGRYK-EAELDMVIEQSKRAT---- 237 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 + D+I AQ L I++ T R A+++ L E + + + Sbjct: 238 ------------PQIVDQIIHLAQDKLGIMVFAATVRHAQEILGLLPEGEAAI--VIGDT 283 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 TLER +II D + K LV +++L G D P L+AIL Sbjct: 284 PTLERDQIINDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324 >gi|332074033|gb|EGI84511.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41301] Length = 671 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM 43160] gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM 43160] Length = 1179 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 20/174 (11%) Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +V+ + A + + + F P E F ++ + E PR DT + + + + Sbjct: 54 PVLVVTAGERDADAVADQLRCFLPDRRTEVFPAW-ETLPHERLSPRADTVGRRLAVLRD- 111 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELL 309 + H ++ ++V+ V + G+G + + V+L+ GD+ E ++ Sbjct: 112 ---LTHPGANGTID----VLVAPVRSVLQPLAPGLGDL-----VPVELRPGDTAELDDVA 159 Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +L Y R ++ RG F V G +++FP E RV +G++++E+ F Sbjct: 160 RALADAAYTRVELVEKRGEFAVRGGLLDVFPP-TEPHPVRVEFWGDEVDELRYF 212 >gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3] gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3] Length = 1158 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 49/252 (19%), Positives = 106/252 (42%), Gaps = 17/252 (6%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 + S Q L + G+ + T+A + + Q +V+ + A L +E A+ Sbjct: 12 AVKSANLAQTLCTIGGAAQALTIANIAKQHQGVTLVVTADTPSAIALETELSYLLSETAM 71 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282 ++ P +T S ++ + R A + + +V+ +S + Sbjct: 72 SIWL-----------FPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQHSVVIVPISTLM 120 Query: 283 GIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 +S+ S ++ L+ GD+ + ++ L+ Y + G F V G I+IFP Sbjct: 121 VKLPPQSFLSGNVLILEKGDNYQLHDVREQLINTGYHSVEQVYEHGEFAVRGSIIDIFPM 180 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 + +R+ +F +++E I F P T + + + +I++ + PT ++A++ ++ Sbjct: 181 G-SNQPFRIELFDDEVESIRHFDPETQRSSQEIASIRLLPAKEF----PTDDSAIEGFRQ 235 Query: 402 ELKMRLIELEKE 413 + R L KE Sbjct: 236 RYRRRFEVLVKE 247 Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 + KR AE ++E L E RV H +++ E ++ D +F+VLV ++ G+D+P Sbjct: 831 IEKRAAE-ISELLPE--ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVP 887 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 888 SANTIVIERADKFGL----AQLHQLRGRVGRS 915 >gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492] gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492] Length = 428 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ L + + V MHS+++ +R E++ + + G+ ++LV +++ Sbjct: 246 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V + Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAI 345 >gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] Length = 614 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 8/139 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK+ E++ +Y+ +R ++ +V +R + L+ G+ D+LV ++ Sbjct: 248 MMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAAR 307 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + + IL+ + + I+ Sbjct: 308 GLDVERISHVVNYDIPYDAESYVHR----IGRTGRAGR--SGEAILFVRPRERRMLSTIE 361 Query: 703 ETTRRREKQLEHNKKHNIN 721 TR++ +Q+E +N Sbjct: 362 RVTRKKIQQIELPTAKEVN 380 >gi|312984225|ref|ZP_07791571.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05] gi|310894444|gb|EFQ43520.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05] Length = 678 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%) Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 +P + ++ATP + L + V +I P + +Q+++VY ++ Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462 Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629 QG +I L+T L + AE+L E L N +V +H ++ ++ EI+ Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFA 522 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688 G+ D+LV +++ G+D+ ++ I +AD+ G + L Q GR R S + Sbjct: 523 AGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCVF 578 Query: 689 YADTITKS 696 AD T S Sbjct: 579 LADPKTDS 586 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V ++ I Q L + +L + + + E L +RV + K Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 TLER EI R+L G +V++G + L+++ + + GLV I Sbjct: 344 TLERCEIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383 >gi|166714770|gb|ABY88098.1| UvrB [Stenotrophomonas sp. LMG 11087] Length = 60 Score = 45.8 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 33/54 (61%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 I++FP+ + A R+ +F ++E+I+ F PLTG+ +R + +Y +HY R Sbjct: 2 IDVFPAESDSEALRIELFDGEVEKITMFDPLTGENMRKLMRFTVYPKTHYADTR 55 >gi|169834385|ref|YP_001695073.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Hungary19A-6] gi|168996887|gb|ACA37499.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Hungary19A-6] Length = 671 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|148984139|ref|ZP_01817434.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP3-BS71] gi|225861521|ref|YP_002743030.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Taiwan19F-14] gi|147923428|gb|EDK74541.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP3-BS71] gi|225728405|gb|ACO24256.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae Taiwan19F-14] gi|301800505|emb|CBW33144.1| ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141] gi|327389882|gb|EGE88227.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA04375] gi|332200255|gb|EGJ14328.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47368] Length = 671 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKTEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1158 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 65/322 (20%), Positives = 129/322 (40%), Gaps = 35/322 (10%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 SR K LL GV + + + +P +++ N+ A + Y++ + +E F Sbjct: 21 SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285 + T T + ++ +I L R ++ + Y + Sbjct: 81 ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 + + + +GD + +L L + Y R+++ + G F + GD ++++P E Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 R+ FG++I+ I F LT Q R++E + P T+ A ++ Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 +L++ GR L A L + LE+ E + Q ++ +RYL P +L +Y Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCNRYLDYLLP--KSFSLLDY 286 Query: 465 IPEDSLLFVDESHVTIPQISGM 486 +P LL ++ + + M Sbjct: 287 LPAKGLLLFNDWQLIAESVKNM 308 >gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM 4166] Length = 1145 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ +R +++ + A +L E F P V +F + YD Sbjct: 18 LPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPELPVLHFPDWETLPYDL 77 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P + + + + Q+ + H +VV + ++ + Sbjct: 78 FSPHQDI------VSQRIATLYQLPELSHG----------VLVVPITTALHRLAPKRFLL 121 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ +++ L Y+ D G F V G I++FP + +R+ Sbjct: 122 GSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMG-SALPYRID 180 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P + I VE+I++ L R L+ Sbjct: 181 LFDDEIETLRTFDPENQRSIDMVESIRL-----------------------LPAREFPLK 217 Query: 412 KEGRLLEAQRLEQRITYDL------EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L T + IE Y E TLF+Y+ Sbjct: 218 KEAVTGFRARFRERFDVDFRRCPIYQDLSTGITPAGIEYYLPLFY-----EETATLFDYL 272 Query: 466 PEDSLLF 472 PEDS +F Sbjct: 273 PEDSQVF 279 Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 33/131 (25%) Query: 605 RNIRVRYMHSEVKTLERI--------------------------EIIRDLRLGKFDVLVG 638 R +V Y+H++VKT+E+ +++ D +F+VLV Sbjct: 804 RGGQVYYLHNDVKTIEKCAADLQTLVPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLVA 863 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698 ++ G+D+P + I ADK G L Q GR R+ + YA +T + Sbjct: 864 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRK 916 Query: 699 LAIDETTRRRE 709 D+ +R E Sbjct: 917 AMTDDAQKRLE 927 >gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 804 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM---------HSEVK-----TLERIEIIRD 627 + +L V T++ AE L + L R RY H K T + +I+ Sbjct: 555 AFKAILFVKTRQSAEQLVKVLTTRAKEERYKFLKPGKVSGHGSTKSGGQSTASQKDIVEK 614 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--------DKEGFLRSKTSLIQTIGRA- 678 R G+ +V+V +L EGLD+PEC +V +D+ G LRSK S I + Sbjct: 615 FRSGQHNVIVATAVLEEGLDVPECNVVIRIDSPATVTAYTQSRGRLRSKKSEFYAILKDF 674 Query: 679 ARNVNSKVILYADTITKSIQLAIDETT 705 N+ + ++ I ++I+ DE T Sbjct: 675 ESNIYANLMKQEFYIKEAIEYLSDENT 701 >gi|148244288|ref|YP_001218982.1| primosomal protein N' [Candidatus Vesicomyosocius okutanii HA] gi|146326115|dbj|BAF61258.1| primosomal protein N' [Candidatus Vesicomyosocius okutanii HA] Length = 680 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMA 200 Q D+ P+ +Q AI Q+LK + LL GVTGSGKT +I++M ++ +V+ Sbjct: 146 QPDFQPTDEQNIAIEQILKSTNQYHAF-LLHGVTGSGKTEVYLHIIQSMIDQKKQVLVLV 204 Query: 201 PNKILAAQLYSEFKN 215 P L Q+ + FK+ Sbjct: 205 PEIGLTPQMITHFKS 219 >gi|116516080|ref|YP_816963.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39] gi|116076656|gb|ABJ54376.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39] Length = 671 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4] gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4] Length = 756 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%) Query: 595 AEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 A DL EYL +R+ +H + + E+ + D G+ DVLV ++ G+D+PE Sbjct: 558 AVDLHEYLSTGPLAGLRIGLLHGRLPSEEKDATMADFAAGRLDVLVSTTVIEVGVDVPEA 617 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ ++DA++ G + L Q GR R Sbjct: 618 TVMVVMDAERFGV----SQLHQLRGRVGRG 643 >gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator] Length = 611 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 10/128 (7%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 VE R+ + D+ N A + L+ V TK+ A+ L EYL + V +H + Sbjct: 455 VEEHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRT 514 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTI 675 ER E +R R GK +LV + GLDIP V D D E + + I Sbjct: 515 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEY-------VHRI 567 Query: 676 GRAARNVN 683 GR R N Sbjct: 568 GRTGRMGN 575 >gi|227878872|ref|ZP_03996777.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256849792|ref|ZP_05555223.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US] gi|262046963|ref|ZP_06019923.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US] gi|227861506|gb|EEJ69120.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256713281|gb|EEU28271.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US] gi|260572945|gb|EEX29505.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US] Length = 678 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%) Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 +P + ++ATP + L + V +I P + +Q+++VY ++ Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462 Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629 QG +I L+T L + AE+L E L N +V +H ++ ++ EI+ Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFA 522 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688 G+ D+LV +++ G+D+ ++ I +AD+ G + L Q GR R S + Sbjct: 523 AGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCVF 578 Query: 689 YADTITKS 696 AD T S Sbjct: 579 LADPKTDS 586 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V ++ I Q L + +L + + + E L +RV + K Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 TLER EI R+L G +V++G + L+++ + + GLV I Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383 >gi|168493601|ref|ZP_02717744.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC3059-06] gi|183576417|gb|EDT96945.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CDC3059-06] Length = 671 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|15903582|ref|NP_359132.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae R6] gi|1150620|emb|CAA90280.1| MmsA [Streptococcus pneumoniae] gi|15459203|gb|AAL00343.1| Branch migration of Holliday junctions, junction-specific DNA helicase [Streptococcus pneumoniae R6] gi|1588991|prf||2209420A mmsA gene Length = 671 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii ATCC 23769] gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii ATCC 23769] Length = 1157 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 7/143 (4%) Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVS-CIYGI 284 + P+A + P D S N I R + LLE+ IV+++V+ I + Sbjct: 58 FIAPDAEILRFPAWDCLPYDRVSPNPAIVAERVATLTCLLEKPTRPRIVLTTVNGLIQRV 117 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 +++ + + G++++Q+ L+ LV Y R D + G F G +IFP+ E Sbjct: 118 APRRAFAGQSLNIATGEALDQEFLIELLVANGYNRTDTVMEPGEFATRGGIFDIFPAG-E 176 Query: 345 DVAWRVSMFGNDIEEISEFYPLT 367 R+ +FG+++E I F P T Sbjct: 177 AEPVRLDLFGDEVENIRGFDPAT 199 >gi|284054715|ref|ZP_06384925.1| type III restriction enzyme, res subunit [Arthrospira platensis str. Paraca] Length = 493 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 22/162 (13%) Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LRIL +L++ E + T Y ++ + + + ER +I+ Sbjct: 315 EIALCTDGKLRILGDILSQNYPERTLIFTVDNTTVYRISQDFLIPAITHQTPVKERHQIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 R G + LV ++L EG+D+P+ + IL S+ IQ +GR R Sbjct: 375 DKFRQGDYRTLVASHVLNEGVDVPDAKIAIILSGTG-----SEREYIQRLGRVLRKGSQT 429 Query: 683 NSKVILYADTITKSIQLAIDETT--RRREKQLEHNKKHNINP 722 + +LY + IT++ +E T RRR Q +K I+P Sbjct: 430 GKRAVLY-EVITENTS---EEQTSQRRRGHQKPQREKPKISP 467 >gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS] Length = 1435 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK D+++ +L EG+D+P C LV D K+ LR S IQ GR AR S Sbjct: 472 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 525 Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714 K + L+++ S +L + E T ++ ++ LEH Sbjct: 526 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRALEH 562 >gi|54026165|ref|YP_120407.1| ATP-dependent DNA helicase RecG [Nocardia farcinica IFM 10152] gi|54017673|dbj|BAD59043.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] Length = 755 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++RV +H + E+ E++R G DVLV ++ G+D+P ++ I+DAD+ G Sbjct: 571 SVRVGLLHGRLPADEKDEVMRAFHEGAVDVLVCTTVVEVGVDVPNATVMVIVDADRFGV- 629 Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688 + L Q GR R + + L Sbjct: 630 ---SQLHQLRGRIGRGAHPGLCL 649 >gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 666 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +G + ++ TKR A+ L Y RN R +H ++ +R + R G F+VLV + Sbjct: 359 KGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 417 Query: 641 LLREGLDIPECGLV 654 + GLDIP L+ Sbjct: 418 VAARGLDIPNVDLI 431 >gi|156844392|ref|XP_001645259.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM 70294] gi|160395530|sp|A7TK55|IF4A_VANPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=Translation initiation factor 1 gi|156115918|gb|EDO17401.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM 70294] Length = 396 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 7/100 (7%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 + D+YD I++ + ++ T+R E+LT+ L E N V ++S++ ER I+++ Sbjct: 252 LSDLYDSISVT-----QAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKE 306 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 R G +L+ +LL G+D+ + LV D +KE ++ Sbjct: 307 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYI 346 >gi|239631975|ref|ZP_04675006.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526440|gb|EEQ65441.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 453 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H ++K E+ +I+R GK VLV ++ G+D+P ++AI DAD+ G Sbjct: 276 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL---- 331 Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R ++ +L AD Sbjct: 332 SQLHQLRGRVGRGQKAAQCLLIAD 355 Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V + Y + Q L + VL ++ LT+ + +++ + Sbjct: 57 DVGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 116 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 T +R E++ +LR G+ ++++G + L+++G+D GLV I Sbjct: 117 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 156 >gi|221232431|ref|YP_002511584.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|225855125|ref|YP_002736637.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA] gi|298229863|ref|ZP_06963544.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255737|ref|ZP_06979323.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503441|ref|YP_003725381.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TCH8431/19A] gi|220674892|emb|CAR69467.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|225723598|gb|ACO19451.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA] gi|298239036|gb|ADI70167.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TCH8431/19A] gi|332199722|gb|EGJ13797.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41317] Length = 671 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|254442721|ref|ZP_05056197.1| primosomal protein N', putative [Verrucomicrobiae bacterium DG1235] gi|198257029|gb|EDY81337.1| primosomal protein N', putative [Verrucomicrobiae bacterium DG1235] Length = 749 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675 EI+ + R GK D+LVG ++ +GLD P LV ++DAD + R+ L+Q Sbjct: 544 EILGEFRKGKIDLLVGTQMIAKGLDFPNVTLVGMVDADLSLHVPDFRANERTFQLLVQVS 603 Query: 676 GRAARN 681 GRA R Sbjct: 604 GRAGRG 609 >gi|194396798|ref|YP_002038308.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54] gi|194356465|gb|ACF54913.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54] Length = 671 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|168699230|ref|ZP_02731507.1| putative helicase, ATP-dependent [Gemmata obscuriglobus UQM 2246] Length = 461 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A++ T Y R + M ++ K ER I+ + G F+ +V +L EG+D+P G+ Sbjct: 348 ADNATVYEVARRYLIPAMTNQTKPKERKAILANFHSGAFNAVVTCQVLNEGVDVPAAGVG 407 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 +L S T +Q +GR R K + + IT++ RR+ + + Sbjct: 408 IVLAGTG-----SATENVQRLGRILRKYADKQAVLYEVITRNTAEEFVSDRRRQHRAFQ 461 >gi|148989348|ref|ZP_01820716.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae SP6-BS73] gi|149021207|ref|ZP_01835453.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP23-BS72] gi|147925098|gb|EDK76178.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae SP6-BS73] gi|147930308|gb|EDK81292.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP23-BS72] Length = 671 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|329944345|ref|ZP_08292591.1| conserved domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328530569|gb|EGF57435.1| conserved domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 561 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 10/151 (6%) Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 +++ P + V ++ E PR DT ++ S + A R L+ Sbjct: 115 LRSYLPADDVAVMPAWETLPH-ERLSPRADTVAQRLSVLRRLAHPEEGGAIRVLVVPVRA 173 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ I G+G +E V L G +V +E L Y R D+ RG + V Sbjct: 174 LLAP---VIAGLGELEP-----VHLAPGLAVGLEETARRLEAAAYTRVDMVESRGEYAVR 225 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 G +++FP E RV FG++I+E+S F Sbjct: 226 GGILDVFPPS-EPRPVRVDFFGDEIDEVSSF 255 >gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei] gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei] Length = 698 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL +N +V +H ++K ER + + R G +LV + G Sbjct: 492 LVFVETKRGASDLAYYLSRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 551 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 552 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 595 >gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1478 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK D+++ +L EG+D+P C LV D K+ LR S IQ GR AR S Sbjct: 515 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 568 Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714 K + L+++ S +L + E T ++ ++ LEH Sbjct: 569 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRALEH 605 >gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256] gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256] Length = 1194 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 Q+ L G +++ L LV + R D +G F V G +++FP+ E+ RV Sbjct: 130 QLATTLAAGQRIDRDALAELLVANGFSRVDTVADQGEFAVRGGLLDLFPAG-EETGLRVD 188 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 FG++IE I F P + + + +++ S Sbjct: 189 FFGDEIESIRRFDPADQRSLGAAKALQLLPAS 220 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 597 DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 D+ EYL R ++Y+ H ++ E E + K+DVLV ++ GLDIP + Sbjct: 868 DIEEYLRTRVPEIKYVVAHGQMGAQEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTL 927 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 + AD+ G L Q GR R SK YA +T AI +T +R K L Sbjct: 928 IVHRADRFGL----AQLYQLRGRVGR---SKTRAYA-YLTTPDGGAITDTAEKRLKLL 977 >gi|332201120|gb|EGJ15191.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47901] Length = 671 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|312284067|ref|NP_001186061.1| probable ATP-dependent RNA helicase DHX58 [Sus scrofa] gi|229473596|gb|ACQ73327.1| LGP2 [Sus scrofa] Length = 681 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+I+ R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 425 EVIQKFRTGALNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 475 >gi|225859451|ref|YP_002740961.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585] gi|225721463|gb|ACO17317.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585] Length = 671 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|208435387|ref|YP_002267053.1| DNA recombinase [Helicobacter pylori G27] gi|208433316|gb|ACI28187.1| DNA recombinase [Helicobacter pylori G27] Length = 623 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P+ S ++N F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACPNNSERLDN-------FIASLPFKLTCDQQNAIKEIQSDLTSSIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus Ueda107] gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus Ueda107] Length = 1184 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + L +G+ ++ +L +L + Y D G F V G ++IFP D+ +R+ +F Sbjct: 165 LMLAVGEQLDIDQLRHNLERAGYHAVDTVYEHGEFAVRGALLDIFPMG-SDLPYRIDLFD 223 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 +++E + F P T I VE I++ + +P +N Sbjct: 224 DEVETLRTFDPETQMTIDKVEKIQLLPAKEFPLNKPGIN 262 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 +++A +L E + E I V + + LER+ + D +F+++V ++ G+DIP Sbjct: 861 EKVARELQELIPEARIAVGHGQMRERDLERV--MSDFYHKRFNIMVCTTIIETGIDIPSA 918 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 + I ADK G L Q GR R+ + YA +T + D+ +R E Sbjct: 919 NTIIINRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPERRAMTDDAVKRLE 969 >gi|167751280|ref|ZP_02423407.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702] gi|167655787|gb|EDR99916.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702] Length = 1175 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 15/218 (6%) Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 I S E V LL+ G++ K +A + E + P +V+ ++ AA+L + A Sbjct: 21 ILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTA 80 Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 F P + + DT + + ++I+ + + +L + I+ SS + + Sbjct: 81 AYQF--------PASDLTLADTEAQSQEYEYKRIETL----SAALSGKARLIISSSEAAV 128 Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341 + + V LK GD ++ EL + LV Y R D+ +G F G +I+P Sbjct: 129 QLTVPKDVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCDMIEGKGQFSFRGSLADIYPV 188 Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 D R+ ++G++I+ ++ F T ++I V+++ I Sbjct: 189 S-SDYPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSI 225 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A D+ + E NI + H + E + + R L G+ DVLV L+ G+D+P C + Sbjct: 842 AADIHSMVPEANIGI--AHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTL 899 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681 I +AD G L Q GR R Sbjct: 900 IIENADCMGL----AQLHQLRGRVGRT 922 >gi|147784525|emb|CAN61726.1| hypothetical protein VITISV_032421 [Vitis vinifera] Length = 554 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 ILL V +K A++L L +IRV +H+++ +R + D R GK VL+ +++ Sbjct: 366 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 425 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S + I IGR+ R Sbjct: 426 GMDFK--GINCVINYD---FPDSPAAYIHRIGRSGR 456 >gi|146295099|ref|YP_001178870.1| type III restriction enzyme, res subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408675|gb|ABP65679.1| type III restriction enzyme, res subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 899 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 8/108 (7%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640 + L ++ AE + +Y + ++ ++S + L+R E IR L+ G+ V+ ++ Sbjct: 517 KTLAFCCSRNHAEFMADYFNKNGVKCCAVYSGEQGKNALQRSEAIRKLKNGQIKVIFTVD 576 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + EG+DIPE +V L + S T +Q +GR R +K L Sbjct: 577 MFNEGVDIPEIDMVMFLRPTE-----SPTVFLQQLGRGLRKAKNKNYL 619 >gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591] gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus suis ST3] gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591] gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3] Length = 526 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R S + I + I++ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRM 362 Query: 710 KQLE 713 K L+ Sbjct: 363 KGLK 366 >gi|311245447|ref|XP_003121832.1| PREDICTED: Fanconi anemia group M protein-like [Sus scrofa] Length = 2053 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + +++ E L +R M H+ K++ E++E+++ R G + Sbjct: 487 RVMIFSSFRDSVQEIAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 546 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S L+Q +GR R ++++ Sbjct: 547 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRQGRIVV 596 >gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01] gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01] Length = 1153 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 61/299 (20%), Positives = 124/299 (41%), Gaps = 36/299 (12%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L + G+ +A++ + ++++ P+ +A +L +E + F + VS + + Sbjct: 21 LGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 + Y D + + I+++I R+ T+S N +V + + + Q Sbjct: 76 ETLPY----DNFSPHQEIISDRIARLYQLPTQS----NGVTIVPVSTVLQRKSPRDFLLQ 127 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + +K GD +L L Y+ D G + G +++FP D +R+ Sbjct: 128 HTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDF 186 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 F ++I+ I F P + I +++ I++ + PT A++ + + + Sbjct: 187 FDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRSQF----- 237 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 EA+R + I M T G+ + Y + L + TLF+Y+PEDS L Sbjct: 238 -----EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQL 283 >gi|149006640|ref|ZP_01830339.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP18-BS74] gi|307127909|ref|YP_003879940.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B] gi|147761938|gb|EDK68901.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP18-BS74] gi|306484971|gb|ADM91840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B] gi|332072867|gb|EGI83348.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17545] Length = 671 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|15901531|ref|NP_346135.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4] gi|111657513|ref|ZP_01408256.1| hypothetical protein SpneT_02001279 [Streptococcus pneumoniae TIGR4] gi|225857310|ref|YP_002738821.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031] gi|18279285|sp|Q54900|RECG_STRPN RecName: Full=ATP-dependent DNA helicase recG gi|14973191|gb|AAK75775.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4] gi|225725262|gb|ACO21114.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031] Length = 671 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener] gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi] Length = 792 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR AE+L L I +H + + +R +RD + G +LV ++ Sbjct: 590 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 649 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLD+P V D KE + T I GRA Sbjct: 650 GLDVPNVAHVIQYDLPKE--MDDYTHRIGRTGRAG 682 >gi|316963063|gb|EFV48890.1| conserved hypothetical protein [Trichinella spiralis] Length = 654 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 44/189 (23%) Query: 518 WNCLRPTTIVVSATPGS--------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569 WNC+R +TPGS ++LE+ E + G PP +I + Sbjct: 84 WNCIR------QSTPGSLLYSGELNFQLEKNNSRKFENTNQANG---PPFQI------LI 128 Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D ++ + L + V+ RM+ ++ E + R + E++++ R Sbjct: 129 DTAKKLQPRSYSYLEVDY-VVGSRMSAEVAEPSFAR---------------QEEVLKNFR 172 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 GK ++L ++L EG+D+ C V D + S +Q+ GRA + + IL Sbjct: 173 HGKLNLLAATSILEEGIDVRHCNYVIRFDTP-----LTFRSFVQSKGRARQKIAYYTILV 227 Query: 690 ADTITKSIQ 698 D KS Q Sbjct: 228 QDRFLKSFQ 236 >gi|301066660|ref|YP_003788683.1| recG-like helicase [Lactobacillus casei str. Zhang] gi|300439067|gb|ADK18833.1| RecG-like helicase [Lactobacillus casei str. Zhang] Length = 718 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H ++K E+ +I+R GK VLV ++ G+D+P ++AI DAD+ G Sbjct: 541 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL---- 596 Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R ++ +L AD Sbjct: 597 SQLHQLRGRVGRGQKAAQCLLIAD 620 Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V + Y + Q L + VL ++ LT+ + +++ + Sbjct: 322 DVGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 T +R E++ +LR G+ ++++G + L+++G+D GLV I Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 421 >gi|296133598|ref|YP_003640845.1| ATP-dependent DNA helicase RecG [Thermincola sp. JR] gi|296032176|gb|ADG82944.1| ATP-dependent DNA helicase RecG [Thermincola potens JR] Length = 808 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 6/101 (5%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A+ L + ++ ++R+ +H +K E+ ++++ R GK D+LV ++ G+++P ++ Sbjct: 615 ADRLAQVVFP-DLRIGLLHGRMKADEKEQVMKAFRDGKIDILVATTVIEVGVNVPNATVM 673 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694 I DA++ G L Q GR R + S IL AD T Sbjct: 674 VIEDAERFGL----AQLHQLRGRVGRGSHQSYCILLADPKT 710 >gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 502 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L +R R +H ++ +R ++R + G DVLV ++ GLDI Sbjct: 249 TKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+ + + D + S + IGR R S + L Sbjct: 307 TGVTHVYNFD---LPQDPESYVHRIGRTGRAGKSGLAL 341 >gi|266620548|ref|ZP_06113483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium hathewayi DSM 13479] gi|288867842|gb|EFD00141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium hathewayi DSM 13479] Length = 823 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGK 632 N + R L TK+ AE + E+ R +R ++S L+R E + +L+ G+ Sbjct: 437 NYSKYNCKRALAFCSTKKHAEYMAEFFQNRGVRAAAVYSGTDGEYNLDRKEALEELKDGR 496 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++ +++ EGLD+ +V L +S +Q +GR R K L Sbjct: 497 LQIIFSVDMFNEGLDVKNIDMVLFLRP-----TQSPAVFLQQLGRGLRTAEGKSYL 547 >gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM 20093] gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM 20093] Length = 1205 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 18/181 (9%) Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP--HNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 A ++P +++ P+ A ++ ++++ NAV + ++ E PR DT + Sbjct: 75 AERKPVVMVVPSAREANEMAEAIRSYYDGDSNAVA-VLDAWETLPHERLSPRADTVANR- 132 Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSV 303 + R+ H + I+V V + G+G ++ + +IG+ + Sbjct: 133 ---MQVFARLCHPQPGDAMFGTIRILVMPVRSLIQPVVTGVGDIKP-----LVFRIGEQI 184 Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 + +++LV+ Y R ++ + RG F V G +++FP + R+ FG++I+ I F Sbjct: 185 ALDDAVAALVRNAYTRVELVMDRGEFAVRGGILDVFPPTAKHPV-RIDFFGDEIDSIRAF 243 Query: 364 Y 364 + Sbjct: 244 H 244 >gi|148654135|ref|YP_001281228.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1] gi|148573219|gb|ABQ95278.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1] Length = 747 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 588 TVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 + L + AE L ER +IR+ +H ++K+ E+ EI+ + + D+LV ++ G+ Sbjct: 550 STLNAQAAEATFADLSERLDIRIGMVHGKMKSKEKQEIMAAFKNAELDLLVATTVIEVGV 609 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696 D+P L+ I +A++ G + L Q GR R V+LY ++++ Sbjct: 610 DVPNASLMVIENAERLGL----SQLHQLRGRVGRGSTKSFCVLLYQTPLSET 657 >gi|86148076|ref|ZP_01066377.1| helicase-related protein [Vibrio sp. MED222] gi|85834136|gb|EAQ52293.1| helicase-related protein [Vibrio sp. MED222] Length = 579 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%) Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L + GF P+ M + P+ +++ LRP A+ G ++ E +++EQ R T Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLRP------ASTGRYK-ESELDMVIEQSKRAT---- 237 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 + D+I A+ L I++ T R A+++ L E + + + Sbjct: 238 ------------PQIVDQIIELAKDKLGIMVFAATVRHAQEILSLLPEGQSSI--VIGDT 283 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 TLER +II D + K LV +++L G D P L+AIL Sbjct: 284 PTLERDQIINDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324 >gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener] gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi] Length = 798 Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR AE+L L I +H + + +R +RD + G +LV ++ Sbjct: 597 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 656 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLD+P V D KE + T I GRA Sbjct: 657 GLDVPNVAHVIQYDLPKE--MDDYTHRIGRTGRAG 689 >gi|315656036|ref|ZP_07908934.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC 51333] gi|315490100|gb|EFU79727.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC 51333] Length = 1165 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 26/193 (13%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 L+ G+ GS + T +V+AP+ A QL E + VE F + + Sbjct: 38 LIAGLPGSDEGLT------------VVLAPSTRAATQLARELGAY--TTGVELFPDW-ET 82 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 E PR DT + +++ R+ H + + V ++++ + + Y Sbjct: 83 LPHERLSPRADTMARRIWALH----RVTHPHPQDAVHFLVMPVRAALAPVNA--HIADYP 136 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRV 350 VQ +GD+ ++ + + L++ Y+R D+ RG F V G +++F P+ V R+ Sbjct: 137 LFTVQ--VGDTYDRDTMAADLLRLGYERVDMVGARGQFAVRGGLLDVFSPTSAHPV--RI 192 Query: 351 SMFGNDIEEISEF 363 +FG++++ I F Sbjct: 193 ELFGDEVDTIRAF 205 >gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275] gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275] Length = 1147 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 66/321 (20%), Positives = 137/321 (42%), Gaps = 44/321 (13%) Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 + K+GD V+ +EL S LV Y+R G F V G ++IF E+ R+ F + Sbjct: 141 KYKVGDIVDIEELSSKLVSLGYERVSKVEGFGQFSVRGGIVDIFSLEYEN-PIRIEFFDD 199 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ I F + + I +++ + + ++ P T + K+ K+ ++E Sbjct: 200 EIDSIRTFDVFSQKSIDKLKSFILTPSREFIYPENVEETVSRMKKDRGKVCSDDVEAV-- 257 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 ++ ++ +D IENY Y + ++FEY+ +++++F+++ Sbjct: 258 ---IDKIARKEYFD-----------GIENYIDYFYP----DVEKSIFEYLDKNAIVFIND 299 Query: 476 -------SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528 + Y+ + R L G + + +D L + C+ IV+ Sbjct: 300 ISRMKERCENFAEEFKDSYKMNLERGTALKSQGNLVYNYID---LEY----CIGDRNIVI 352 Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588 + S + +G V++I+ E+ S +++ + DE+ G +I+L Sbjct: 353 N----SLLPKAVKGFNVKEILNFDSR-----EVPSFNGKIDILADELQRLKYSGHKIILA 403 Query: 589 VLTKRMAEDLTEYLYERNIRV 609 V + A+ L E L+E ++ V Sbjct: 404 VNSSERAKKLKEALFEYDVEV 424 >gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori] gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori] Length = 512 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY------MHSEVKTLERIEIIRD 627 EI + + G + ++ V TKR AE+++ RNIR RY MH + ER E++ Sbjct: 321 EIGQSQEPGAKTIIFVETKRKAENIS-----RNIR-RYGWPAVCMHGDKTQQERDEVLYQ 374 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 + G+ +LV ++ GLD+ G+ +++ D + S I IGR R+ SK Sbjct: 375 FKEGRASILVATDVAARGLDVD--GIKYVINFD---YPNSSEDYIHRIGRTGRS-KSKGT 428 Query: 688 LYA 690 YA Sbjct: 429 SYA 431 >gi|66391261|ref|YP_238583.1| ORF006 [Staphylococcus phage Twort] gi|62637191|gb|AAX92302.1| ORF006 [Staphylococcus phage Twort] Length = 1004 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 7/100 (7%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +G+ I++ +T E++++ L E I ++H EV + R + + D+R GK V++ + Sbjct: 866 KGVLIIVNFITH--GENISKLLEELGIEHFFLHGEVDSELRQQKLNDMRSGKLKVMIATS 923 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ EG+DI G+ A++ LR ++Q IGRA R Sbjct: 924 LIDEGVDI--SGIHALILGAGGKSLR---QVLQRIGRALR 958 >gi|332814684|ref|XP_003309348.1| PREDICTED: interferon-induced helicase C domain-containing protein 1 [Pan troglodytes] Length = 1024 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 769 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 822 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 823 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 875 >gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium Broad-1] gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium Broad-1] Length = 1198 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 20/199 (10%) Query: 172 LLLGVTG--SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 L L VTG + + F + ++ +R + + A L S+ + P ++V Y+ S+ Sbjct: 37 LALDVTGPEALRPFVVTGLVR-QERTVLAVTATSREAEDLVSDLTDLLPPDSVAYYPSW- 94 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GI 284 + E PR+DT + + + A L +VV+ V + G+ Sbjct: 95 ETLPHERLSPRSDTVGRRLAVLRRLRHPDADGAHGPL-----KVVVAPVRSVLQPQVKGL 149 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 G +E V+L G V +++ L Y R D+ RG F V G +++FP E Sbjct: 150 GDLEP-----VELVKGQEVSLDDVVVKLADAAYSRVDLVEKRGEFAVRGGIVDVFPP-TE 203 Query: 345 DVAWRVSMFGNDIEEISEF 363 + RV +G++++ I F Sbjct: 204 EHPVRVEFWGDEVDSIRHF 222 >gi|301794675|emb|CBW37126.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV104] Length = 671 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis SK135] gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis SK135] Length = 1169 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 141 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGKFSLRGGIIDIYP--LIGTPVRIELFDTE 198 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N+ ++I S Y+ + +K+ + ++EK R Sbjct: 199 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 258 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L S E P TL +Y +++++ Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 304 Query: 472 FVDE 475 VDE Sbjct: 305 VVDE 308 >gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891] gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891] Length = 1153 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 38/296 (12%) Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 G+ ++++ A + ++ P+ A +L E + F VS + ++ Y Sbjct: 26 GASLAIAISELAAAHGKHTLLAVPDPQTALKLLQEIEQFTTQE-----VSLFPDWETLPY 80 Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQ 296 D++ + I+++I R+ T++ I + V + S Y Q + Sbjct: 81 ----DSFSPHQEIISDRISRLYQLPTQT-----GGITIVPVGTLLQRQSPRDYLMQHTLM 131 Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 +K+GD ++L L K Y+ D G + G +++FP +D +R+ F ++ Sbjct: 132 VKVGDLFSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSKD-PFRIDFFDDE 190 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 I+ I F P + I + + I++ + PT +A++ + + R Sbjct: 191 IDTIRTFDPENQRSIEDTKEIRLLPAHEF----PTSESAIEDFRIRWRQRF--------- 237 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 EA+R + + M + G+ + Y + L E TLF+YIPEDS L Sbjct: 238 -EARREPESVY----MQVSKGTWPAGIEYWQPLFF----EQTETLFDYIPEDSQLL 284 >gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 517 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L++ L R +H ++ +RI ++R + GK D+L+ ++ GLDI Sbjct: 249 TKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI-DETTRRR 708 G+ + + D + S + IGR R S V + T + L I +ETT++R Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVEETTKKR 362 >gi|182684639|ref|YP_001836386.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14] gi|303254307|ref|ZP_07340415.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455] gi|303258630|ref|ZP_07344610.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293] gi|303261793|ref|ZP_07347739.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP14-BS292] gi|303263657|ref|ZP_07349579.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397] gi|303266833|ref|ZP_07352712.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457] gi|303269890|ref|ZP_07355632.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458] gi|182629973|gb|ACB90921.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14] gi|301802397|emb|CBW35151.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV200] gi|302598658|gb|EFL65696.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455] gi|302636876|gb|EFL67365.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP14-BS292] gi|302640131|gb|EFL70586.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293] gi|302640568|gb|EFL70973.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458] gi|302643601|gb|EFL73869.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457] gi|302646695|gb|EFL76920.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397] Length = 671 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1] gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1] Length = 450 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|26343661|dbj|BAC35487.1| unnamed protein product [Mus musculus] Length = 651 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633 R+++ + E++ E L + +R M H+ K E+++++R R G + Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + LV + EGLDI E L+ DA K S LIQ +GR R ++++ Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572 >gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium longum DJO10A] gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium longum DJO10A] gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase) [Bifidobacterium longum DJO10A] Length = 1194 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|322412623|gb|EFY03531.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 671 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 5/95 (5%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 ++ + R+ MH ++K E+ I++ + + D+LV ++ G+++P ++ I+DAD+ Sbjct: 492 FKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRF 551 Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696 G + L Q GR R S IL A+ T+S Sbjct: 552 GL----SQLHQLRGRVGRGYKQSYAILVANPKTES 582 >gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68] gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68] Length = 1194 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 421 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V TK AE + + L + I H E+ +R +++ D + + V+V ++ Sbjct: 247 RVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLKVVVATDVAA 306 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GLDI + +V D RS I IGR R V L Sbjct: 307 RGLDIAQLPVVVNFD-----LPRSALDYIHRIGRTGRAGEKGVAL 346 >gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 408 Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TKR A+ L L++ + +H +++ +R +I R G+ ++V ++ Sbjct: 243 IIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASR 302 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP V DA + S+ I IGR AR Sbjct: 303 GLDIPHIQHVINYDAPQ-----SQADYIHRIGRTAR 333 >gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 917 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK+MAED+ L+ I +H + + +R + D + +LV ++ Sbjct: 717 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 776 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLDIP+ V D +E + T I GRA Sbjct: 777 GLDIPDVAHVVQFDLPQE--MDDYTHRIGRTGRAG 809 >gi|319788495|ref|YP_004147970.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1] gi|317467007|gb|ADV28739.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 801 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 16/135 (11%) Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605 +V+P + +R SAR+Q + A + GL+ L+ ++ M E LT+YL + + Sbjct: 279 VVNPDLGLRASARSQSNRI---ARAALKAGLKTLVFAQSRTMVEVLTKYLKDVFDSDPRK 335 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 RVR ER E + +R G+ D +V + L G+DI LV + G+ Sbjct: 336 PARVRAYRGGYLPTERREAEQAMRAGRIDCIVSTSALELGVDIGSLDLVVL-----NGYP 390 Query: 666 RSKTSLIQTIGRAAR 680 S + Q GRA R Sbjct: 391 GSVAATWQRFGRAGR 405 >gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM 7271] gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM 7271] Length = 1109 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 25/234 (10%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 G+ G+ + +A V +RP +++ P+K +A L N +E V + P Sbjct: 31 GLAGASLSLLIANVYTNTKRPLLILLPDKEESAYLL---------NDLETLVGEQVLFFP 81 Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288 ++Y R IE + N E ++R+ +S IVVS ++ + + + Sbjct: 82 DSY--RRPYQIEDTDNANVLLRAEVLNRLSNSG-------QPLIVVSYPEALFEKVITRK 132 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 Q +++ GD + + L L + R D G F V G +++F S + + Sbjct: 133 QLEQNTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIVDVF-SFSNNEPY 191 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 R+ FGN++E I F T + I I N + ++YI E+ Sbjct: 192 RIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLEYISEQ 245 >gi|260950467|ref|XP_002619530.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720] gi|238847102|gb|EEQ36566.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720] Length = 470 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 3/97 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TKR A+ L + + + V +H + ER +I D R G+ VL+ N+L G Sbjct: 322 IIFVGTKRTADMLYQKMKQEGHTVSVLHGSLDNAERDRLIDDFREGRSKVLITTNVLARG 381 Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 +DI +V D DK+G T L IGR R Sbjct: 382 IDIASVSMVVNYDLPVDKDGKPDPSTYL-HRIGRTGR 417 >gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera] Length = 666 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +G + ++ TKR A+ L Y RN R +H ++ +R + R G F+VLV + Sbjct: 359 KGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 417 Query: 641 LLREGLDIPECGLV 654 + GLDIP L+ Sbjct: 418 VAARGLDIPNVDLI 431 >gi|47226775|emb|CAG06617.1| unnamed protein product [Tetraodon nigroviridis] Length = 558 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + N+ +H + + ER + + R GK VLV ++ Sbjct: 423 RTMVFVETKRQADFIAAHLCQENVPTTSIHGDREQREREMALANFRSGKCPVLVATSVAA 482 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILY 689 GLDIP+ V D + + IGR R NV V Y Sbjct: 483 RGLDIPDVQHVINFD-----LPNNIDEYVHRIGRTGRCGNVGRAVSFY 525 >gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi] Length = 794 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR AE+L L I +H + + +R +RD + G +LV ++ Sbjct: 591 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 650 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLD+P V D KE + T I GRA Sbjct: 651 GLDVPNVAHVIQYDLPKE--MDDYTHRIGRTGRAG 683 >gi|322707397|gb|EFY98975.1| DEAD/DEAH box helicase [Metarhizium anisopliae ARSEF 23] Length = 651 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A EY Y+ R++ + ER EI+ D + G F VLV + EG DIP Sbjct: 299 LARKFREYGYD----ARFVTGDTPKQERSEILHDFKKGCFPVLVNCGVFTEGTDIPNIDC 354 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680 + + RS+ L+Q IGR R Sbjct: 355 IVLGRP-----TRSRNLLVQMIGRGMR 376 >gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI 77-13-4] gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI 77-13-4] Length = 688 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L +N +H + ER + R G+ +L Sbjct: 451 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPIL 510 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 511 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 555 >gi|302892891|ref|XP_003045327.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256726252|gb|EEU39614.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 596 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 41/75 (54%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 Q+ RIL+ L K+ A + +L + +RV +H +++ +R + + + G VLV Sbjct: 430 QKNDRILVFCLYKKEATRVENFLSRKGVRVCGIHGDLRQEQRTKSLEAFKTGVTPVLVAT 489 Query: 640 NLLREGLDIPECGLV 654 ++ GLDIPE LV Sbjct: 490 DVAARGLDIPEVKLV 504 >gi|209521901|ref|ZP_03270572.1| DEAD/H associated domain protein [Burkholderia sp. H160] gi|209497659|gb|EDZ97843.1| DEAD/H associated domain protein [Burkholderia sp. H160] Length = 1313 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 10/164 (6%) Query: 526 IVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQG 582 +V A+P S +C I V + R L PPV + + A E VYD + Q Sbjct: 254 LVGGASPDSDVPAECAVIDVGHVRARDLALEIPPVPLEAVMANEVWERVYDRLAELVAQH 313 Query: 583 LRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 L+ V T+RMAE +L ER + V H + R + + L+ G+ VL+ Sbjct: 314 RTTLIFVNTRRMAERAARHLTERLGKDAVAAHHGSLAKEYRFDAEQRLKRGELRVLIATA 373 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 L G+DI + LV + G R+ +Q +GR+ +V Sbjct: 374 SLELGIDIGDVDLVC-----QMGSPRAIAPFLQRVGRSGHHVGG 412 >gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU144] Length = 1166 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N+ ++I S Y+ + +K+ + ++EK R Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 255 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L S E P TL +Y +++++ Sbjct: 256 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 301 Query: 472 FVDE 475 VDE Sbjct: 302 VVDE 305 >gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043] gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM 43043] Length = 562 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +GL I+ + TKR A + + L ER +H ++ R + +R R GK DVLV Sbjct: 264 AKDRGLTIIFS-RTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAFRNGKVDVLV 322 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD----- 691 ++ G+D+ V ++ + + + IGR AR N+ V + + D Sbjct: 323 ATDVAARGIDVDNVTHVINFQCPED-----EKTYLHRIGRTARAGNTGVAVTFVDWDDLH 377 Query: 692 ---TITKSIQLAIDE 703 I K++ L I E Sbjct: 378 RWALINKTLDLGIPE 392 >gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44] gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44] Length = 527 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362 >gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 1194 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYARVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33] gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33] gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84] gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7] gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407] gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33] gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33] gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84] gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407] gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7] gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14] Length = 514 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R S + I + I++ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRM 362 Query: 710 KQLE 713 K L+ Sbjct: 363 KGLK 366 >gi|82778002|ref|YP_404351.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae Sd197] gi|309784609|ref|ZP_07679244.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617] gi|81242150|gb|ABB62860.1| ATP-dependent RNA helicase [Shigella dysenteriae Sd197] gi|308927506|gb|EFP72978.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617] Length = 444 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L + R ++ V + +L +L E I RY+ E+ +R E I+ L G+ +VL Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVNVL 302 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ G+DIP+ V D RS + + IGR AR Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341 >gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705] gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705] Length = 1194 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|313203296|ref|YP_004041953.1| transcriptioN-repair coupling factor [Paludibacter propionicigenes WB4] gi|312442612|gb|ADQ78968.1| transcription-repair coupling factor [Paludibacter propionicigenes WB4] Length = 1113 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 16/221 (7%) Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 +D+ Q + +L+ S E+ + G++GS A + +A I++ + Sbjct: 4 SDFQQLYAQHPQVKELVSWASSSEQNIKISGLSGSSCALVAASLFKAHSNTQILVMNDAD 63 Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264 AA LY++ K V +F P +Y K S ++ + +R Sbjct: 64 DAAYLYNDLKQILSTEEVFFF--------PSSYKRAI-----KLSQLDAANEILRTEVLN 110 Query: 265 SLLERNDCIVVSSV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322 L + IVV + S + + S S ++++ G+ + ++ L++ ++R D Sbjct: 111 RLANTSSPIVVVTYPESLMQKVVSAGSMQTRMLRMHTGEGLSLNFVVEMLIEYGFERVDF 170 Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 G F V G ++IF S+ ++ +R FG++IE I F Sbjct: 171 VYEPGQFSVRGSIVDIF-SYANELPYRCDFFGDEIETIRVF 210 >gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum] gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5] Length = 924 Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK+MAED+ L+ I +H + + +R + D + +LV ++ Sbjct: 724 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 783 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 GLDIP+ V D +E + T I GRA Sbjct: 784 GLDIPDVAHVVQFDLPQE--MDDYTHRIGRTGRAG 816 >gi|332284439|ref|YP_004416350.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7] gi|330428392|gb|AEC19726.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7] Length = 699 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++RV +H ++ T E+ E++++ R G+ D+LV ++ G+D+P L+ I A++ G Sbjct: 523 DMRVGLIHGKLATSEKQEVMQEFRAGRIDLLVATTVIEVGVDVPNASLMIIEHAERFGL- 581 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R Sbjct: 582 ---AQLHQLRGRVGRG 594 >gi|291570834|dbj|BAI93106.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 493 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 22/162 (13%) Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LRIL +L++ E + T Y ++ + + + ER +I+ Sbjct: 315 EIALCTDGKLRILGDILSQNHPERTIIFTVDNTTVYRISQDFLIPAITHQTPVKERHQIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 R G + LV ++L EG+D+P+ + IL S+ IQ +GR R Sbjct: 375 DKFRQGDYRTLVASHVLNEGVDVPDAKIAIILSGTG-----SEREYIQRLGRVLRKGSQT 429 Query: 683 NSKVILYADTITKSIQLAIDETT--RRREKQLEHNKKHNINP 722 + +LY + IT++ +E T RRR Q +K I+P Sbjct: 430 GKRAVLY-EVITENTS---EEQTSQRRRGHQKPQREKPKISP 467 >gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD box protein 2; AltName: Full=p68-like protein gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789] gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a] gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118] Length = 546 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + L+ TKRM +D+T+YL E +H + ER ++++ R G+ ++V ++ Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 G+D+ G+ +++ D G + I GRA Sbjct: 422 RGIDVK--GINYVINYDMPGNIEDYVHRIGRTGRAG 455 >gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis VCU028] Length = 1166 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N+ ++I S Y+ + +K+ + ++EK R Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 255 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L S E P TL +Y +++++ Sbjct: 256 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 301 Query: 472 FVDE 475 VDE Sbjct: 302 VVDE 305 >gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis] Length = 540 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 16/163 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR A++LT +L ++ V +H + ER ++ + R GK +++ ++ Sbjct: 346 KVLIFVETKRKADELTRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSPIVIATDVAA 405 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 GLD+ + V D + + + IGR R N Y + + A D Sbjct: 406 RGLDVDDIKFVVNYD-----YPQCSEDYVHRIGRTGR-CNRTGTAYTFFNANNARYAKDL 459 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746 E K ++NP+ + +ME+I + +A TT I Sbjct: 460 IDVLIE------AKQHVNPKLYELGVMEII----VGEAVTTTI 492 >gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708] gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708] Length = 1166 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 114/271 (42%), Gaps = 31/271 (11%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A ++Y++ + Y + Y+P + P T+ + + + ++ + Sbjct: 64 AGRVYAQMEAMGWKTVHFYPAAEASPYEP--FDPETELSWGQMQVLADLVNGQWSVVSSQ 121 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 L RN I+ + + + +E + + LK G + E + Y+R + Sbjct: 122 LPNRNTAIIATVGALQPHLPPLEVFRSFCLSLKKGLEYDLDEFSEKITSLGYERVPLVET 181 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSH 384 G + GD +++FP E + R+ FG++I++I EF P T + + VE I Sbjct: 182 EGQWSRRGDIVDVFPVSSE-LPVRLEWFGDEIKQIREFDPATQRSALDKVEQI------- 233 Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444 ++TP + +K+ + R++ + + D++ LE G +E Sbjct: 234 FLTPTSFSGIVLAALKQSSEFRVLSAD--------------LNSDVDDLENLG----LEG 275 Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 R+L G + P +L +Y+ ++L+ +DE Sbjct: 276 SRRFL-GLAFAK-PASLLDYLSANTLIAIDE 304 >gi|197098648|ref|NP_001124599.1| probable ATP-dependent RNA helicase DHX58 [Pongo abelii] gi|55725102|emb|CAH89418.1| hypothetical protein [Pongo abelii] Length = 678 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+IR R G ++LV ++ EGLDIP C +V + G L ++ S++Q GRA Sbjct: 422 EVIRKFRDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 >gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium] gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium] Length = 396 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V T+ AE + L N +V Y H ++ +R +I+ D +L K +LV +L G Sbjct: 245 IIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKILVSTDLASRG 304 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +DIP+ L I++ D + R I IGR AR Sbjct: 305 IDIPDIEL--IINYDIPLYTR---DYIHRIGRTAR 334 >gi|320582272|gb|EFW96489.1| RNA helicase [Pichia angusta DL-1] Length = 484 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK A L + + V +H +++ ER +I D R G+ VL+ N+L G Sbjct: 337 IIFVQTKDTASKLYARMKQEGHAVSILHGDLQPAERDRLIDDFREGRSKVLITTNVLARG 396 Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D DK G T L IGR R Sbjct: 397 IDIPSVSMVVNYDIPLDKSGKPDPSTYL-HRIGRTGR 432 >gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1448 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK D+++ +L EG+D+P C LV D K+ LR S IQ GR AR S Sbjct: 472 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 525 Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714 K + L+++ S +L + E T ++ ++ LEH Sbjct: 526 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRTLEH 562 >gi|12621066|gb|AAG54076.1| RNA helicase-DEAD box protein RH116 [Homo sapiens] Length = 1025 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876 >gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis RP62A] gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis RP62A] Length = 1169 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 141 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 198 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N+ ++I S Y+ + +K+ + ++EK R Sbjct: 199 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 258 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L S E P TL +Y +++++ Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 304 Query: 472 FVDE 475 VDE Sbjct: 305 VVDE 308 >gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c] gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD box protein 2; AltName: Full=p68-like protein gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae] gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae] gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c] Length = 546 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + L+ TKRM +D+T+YL E +H + ER ++++ R G+ ++V ++ Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 G+D+ G+ +++ D G + I GRA Sbjct: 422 RGIDVK--GINYVINYDMPGNIEDYVHRIGRTGRAG 455 >gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JCM 1217] gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JCM 1217] Length = 1194 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira] Length = 1448 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK D+++ +L EG+D+P C LV D K+ LR S IQ GR AR S Sbjct: 472 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 525 Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714 K + L+++ S +L + E T ++ ++ LEH Sbjct: 526 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRTLEH 562 >gi|242279272|ref|YP_002991401.1| primosomal protein N' [Desulfovibrio salexigens DSM 2638] gi|242122166|gb|ACS79862.1| primosomal protein N' [Desulfovibrio salexigens DSM 2638] Length = 780 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 7/93 (7%) Query: 146 DYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTF---TMAKVIEAMQRPAIVMAP 201 D+ PS Q AI +LL + + V+LL G+TGSGKT T A+ + IV+ P Sbjct: 241 DFTPSEQQQGAIDELLAALDEPKSTVKLLHGITGSGKTLVYMTAARKCLEQGKSVIVLVP 300 Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 LA L++ FP +A +Y Y+ Y P Sbjct: 301 EIALAYALWNGICPLFP-DARKYL--YHGYQTP 330 >gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina 98AG31] Length = 537 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR+A+DLT+YL + +H + + ER ++ + + G+ +++ ++ Sbjct: 355 KVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGRSPIMIATDVAS 414 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691 GLD+ + V ++ D + I GRA R + + AD Sbjct: 415 RGLDVKDVAYV--INYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISAD 460 >gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385] Length = 1305 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V I++ + PT + A K + + + + + +A Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478 + G + Y L N E TLF+YI ED+L +D+ H Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285 Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 996 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1052 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1053 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1088 >gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum] gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum] Length = 558 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER I+ R GK DVLV ++ + Sbjct: 363 VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQEEREGAIKAFREGKKDVLVATDVASK 422 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLD P+ V D +E + I IGR R N V Sbjct: 423 GLDFPDIQHVINFDMPRE-----IENYIHRIGRTGRRGNKGV 459 >gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis 157F] gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis 157F] Length = 1194 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum F8] Length = 1194 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|269137394|ref|YP_003294094.1| putative helicase [Edwardsiella tarda EIB202] gi|267983054|gb|ACY82883.1| putative helicase [Edwardsiella tarda EIB202] Length = 1078 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 12/91 (13%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N R+ +++ +K R +I D++ G +D++V +++L+EG D P+ + A+ G Sbjct: 383 NERIAIVYTGIKN--RRNLISDIKNGAYDIIVCVDMLKEGFDYPDFKIAAV-----HGIH 435 Query: 666 RSKTSLIQTIGRAARNVN-----SKVILYAD 691 +S L+Q IGR R S V+ YAD Sbjct: 436 KSLAVLLQFIGRFTRTQEGLGDASFVVNYAD 466 >gi|220906008|ref|YP_002481319.1| primosome assembly protein PriA [Cyanothece sp. PCC 7425] gi|219862619|gb|ACL42958.1| primosomal protein N' [Cyanothece sp. PCC 7425] Length = 836 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%) Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR- 680 G+ D+++G +L +GLD+P+ V +L AD G L R+ +L Q GRA R Sbjct: 633 GEADLMIGTQMLTKGLDLPQVSFVGVLSAD--GLLNLPDFRAGERTFQTLTQVAGRAGRG 690 Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 N +V+L T + A+ Q E N++ +++ + I+ + + E Sbjct: 691 NEPGQVLLQTYTPHHPVIQAVQRYQFEAFMQEELNQRSSLHYPPQGQLILLRLSGLQEET 750 Query: 741 AATTNISIDAQ 751 ATT I++ Q Sbjct: 751 VATTAIALADQ 761 >gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae] gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae] Length = 784 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+L++ N V +H + ER E +R R G +LV + G Sbjct: 553 LIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 612 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 613 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 656 >gi|89147697|gb|ABD62707.1| vasa protein [Acanthopagrus schlegelii] Length = 260 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + YL + + +H + + ER + + D R GK V+V ++ Sbjct: 166 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 225 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP+ V D KE + IGR R N Sbjct: 226 RGLDIPDVQHVVNFDLPKE-----IDEYVHRIGRTGRCGN 260 >gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC 12228] gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC 12228] Length = 1169 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 141 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 198 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N+ ++I S Y+ + +K+ + ++EK R Sbjct: 199 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 258 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L S E P TL +Y +++++ Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 304 Query: 472 FVDE 475 VDE Sbjct: 305 VVDE 308 >gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii] Length = 645 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR+A+ + +L + + +H + ER + + D R GK VLV ++ Sbjct: 464 RTMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGDFRSGKCPVLVATSVAA 523 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLA 700 GLDIP+ V D + + IGR R N + + + D S QLA Sbjct: 524 RGLDIPDVQNVVNFD-----LPNNIDEYVHRIGRTGRCGNLGRAVSFFDPDNDS-QLA 575 >gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis M13399] Length = 1305 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V I++ + PT + A K + + + + + +A Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478 + G + Y L N E TLF+YI ED+L +D+ H Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285 Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 996 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1052 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1053 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1088 >gi|166714765|gb|ABY88096.1| UvrB [Stenotrophomonas sp. LMG 6608] Length = 60 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387 I++FP+ + R+ + ++E+I+ F PLTG+ +RN++ +Y +HY + Sbjct: 2 IDVFPAESDSEPLRIELLEGEVEKITLFEPLTGETLRNMQRFTVYPKTHYAS 53 >gi|330790576|ref|XP_003283372.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum] gi|325086637|gb|EGC40023.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum] Length = 462 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q+GL IL+ +K A DL + L I V +HSE +R I++ R GK VL+ Sbjct: 288 QKGLEPPILIFTQSKERAHDLFQELVFDGINVDVIHSERTQFQRDTIVKKFRTGKIWVLI 347 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D V D F ++ S + IGR R Sbjct: 348 CTELMARGMDFKGVNYVINFD-----FPQTLASYVHRIGRTGR 385 >gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4] gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4] Length = 1222 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 E+ S + I R + + R I+V++ + S + + V+L GD V+ Sbjct: 99 ERLSPAADTIGRRLEVLSAVMAGRAPRIIVAAARSVVQPISPAAARREPVRLTRGDEVDP 158 Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 +L++ L + Y R+D+ RG V G +++FP+ D R+ G++I EI EF Sbjct: 159 TDLMARLAEFAYTREDMVARRGDIAVRGGIVDVFPT-TADHPLRIEFDGDEIAEIREF 215 >gi|302392174|ref|YP_003827994.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501] gi|302204251|gb|ADL12929.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501] Length = 793 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 14/118 (11%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAE L E ++ ++ +H ++KT E+ ++ R + D+LV ++ G+D+ L Sbjct: 599 MAEKLDEDIFP-EFKIGLLHGQLKTDEKEAVMEGFRSQQIDILVSTTVIEVGVDVANATL 657 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTRRREK 710 + ILDA + G L Q GR R+ S IL AD T ET R R K Sbjct: 658 MVILDAQRFGL----AQLHQLRGRVGRSEYQSYCILVADPGT--------ETGRERMK 703 >gi|297271814|ref|XP_001110023.2| PREDICTED: sentrin-specific protease 3-like isoform 3 [Macaca mulatta] Length = 971 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+Y+ + + + ++ + T+R + LTE ++ R+ V MH ++ ER I+R+ R Sbjct: 830 DLYETLTIT-----QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 884 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658 G VL+ +LL G+D+ + LV D Sbjct: 885 SGSSRVLITTDLLARGIDVQQVSLVINYD 913 >gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 402 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TKR A+ L L++ + +H +++ +R +I R G+ ++V ++ Sbjct: 237 IIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASR 296 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP V DA + S+ I IGR AR Sbjct: 297 GLDIPHIQHVINYDAPQ-----SQADYIHRIGRTAR 327 >gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1194 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267 L E PH E PR DT + + R++H S T S+ Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143 Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 +V+ S I G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|149011439|ref|ZP_01832686.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP19-BS75] gi|147764429|gb|EDK71360.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP19-BS75] Length = 455 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 268 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 326 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 327 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 366 >gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM 43833] gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM 43833] Length = 1164 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 29/238 (12%) Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 + F +A + A RP + + + A L + + + V F ++ + E PR Sbjct: 40 RPFVVAAL--ARIRPVLAVTATEREAEDLAAALDSLMDESGVAVFPAW-ETLPHERLSPR 96 Query: 241 TDTYIEKESSINEQIDRMRHS-----ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 +DT + + + R+ H A L + + G+G +E V Sbjct: 97 SDTVGRRLAVLR----RLAHPVEGDPAAGPLRVVVAPVRAVLQPIVAGLGDLEP-----V 147 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +L+ GD + E+++ LV Y R D+ RG V G +++FP E+ R+ +G+ Sbjct: 148 RLRPGDEADLDEVVARLVDNGYHRVDMVERRGEVAVRGGLVDVFPP-TEEHPLRMEFWGD 206 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413 +EEI F K+ + ++++ + P L + EE++ R EL E Sbjct: 207 TVEEIRWF------KVADQRSLEVAPEGLFAPPCRELP-----LTEEVRRRARELAGE 253 >gi|260773352|ref|ZP_05882268.1| helicase-related protein [Vibrio metschnikovii CIP 69.14] gi|260612491|gb|EEX37694.1| helicase-related protein [Vibrio metschnikovii CIP 69.14] Length = 975 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 10/142 (7%) Query: 541 QGIIVEQIIRPTGLVDP-PVEIRSARTQ-VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 QG+ ++I G DP +E + A ++ E VY E A++ R L ++K+ A+ + Sbjct: 406 QGVNYQEIPWRNGKFDPNTLENKLATSRRAEHVYREWQ--AKKQTRTLAFCVSKKHADFM 463 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 +Y + I ++S+ + R + ++ L GK D++ ++L EG D+P + + Sbjct: 464 AQYFVAKGINAVTVYSD-SAVRRNQALQWLDQGKIDIIFSVDLFNEGTDLPSIDTILMAR 522 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 + SK +Q +GR R Sbjct: 523 PTE-----SKILFLQQLGRGLR 539 >gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 769 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR + LT L R V MH + +R + + + G+ ++LV ++ Sbjct: 338 RTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILVATDVAS 397 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDI V D F I IGR AR+ Sbjct: 398 RGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARS 430 >gi|146422637|ref|XP_001487254.1| hypothetical protein PGUG_00631 [Meyerozyma guilliermondii ATCC 6260] Length = 413 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI++ RLG +VLV ++ EGLDI E L+ D+ S IQ +GR R Sbjct: 8 EIVKKFRLGDINVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 62 Query: 683 NSKVIL 688 + KV+L Sbjct: 63 DGKVLL 68 >gi|322392696|ref|ZP_08066156.1| DNA helicase RecG [Streptococcus peroris ATCC 700780] gi|321144688|gb|EFX40089.1| DNA helicase RecG [Streptococcus peroris ATCC 700780] Length = 671 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + +V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAKVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|298368995|ref|ZP_06980313.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str. F0314] gi|298282998|gb|EFI24485.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str. F0314] Length = 680 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ + G+ +VLV ++ G+D+P L+ Sbjct: 496 EQLQAALPELNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMV 553 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591 >gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] Length = 586 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 29/180 (16%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TK+ E+L + L R ++ ++ + R + LR G D+LV ++ Sbjct: 258 IIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAAR 317 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTITKSIQ 698 GLD+ LV D D E ++ I GRA R + IL+ + + K+I+ Sbjct: 318 GLDVERISLVVNFDIPHDTESYVHR----IGRTGRAGR--TGEAILFVTPRENRLLKAIE 371 Query: 699 LA------------IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746 A ++E T R ++ + H +N Q + E + P++ E T N+ Sbjct: 372 KATRQKVEPLVMPTVEELTVTRTQKFQDRISHTLNSQDLSE-----LRPVIEEYVNTHNV 426 >gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 524 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 32/242 (13%) Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619 E+R+ R++VE + +++ Q R ++ TK+M ED+ E L R +H ++ Sbjct: 224 EVRN-RSKVEVMCRLLDMEPTQ--RGIVFCNTKQMVEDVCEALNARGYTADRIHGDISQG 280 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGR 677 R ++IR R ++LV ++ GLDI + LV D D E ++ I GR Sbjct: 281 IREKVIRRFRDNAIEILVATDVAARGLDIDDIELVFNYDLPYDPEDYVHR----IGRTGR 336 Query: 678 AARNVNSKVILYADTITK--SIQLAIDETTRR----REKQLEHNKKHNINPQSVKEKIME 731 A R+ S +Y I + +I+ I ++ RR ++++E + I Q +++K+ Sbjct: 337 AGRSGKSITFVYGRDIRRLEAIERYIRQSIRRTRIPSQEEVEGYRADKIFNQ-LRDKLEA 395 Query: 732 V--------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783 +D +L DA T I + + + H + R +A DN ++E+ Sbjct: 396 AEFKNYDHQVDRLL--DAGHTPTDIASALIDM------LHTEDERSSETIAEDNEPYQES 447 Query: 784 AR 785 AR Sbjct: 448 AR 449 >gi|268319221|ref|YP_003292877.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785] gi|262397596|emb|CAX66610.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785] Length = 679 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL + Y +N V +H ++K ++ EI+ GK ++LV +++ G+D+P Sbjct: 488 AEDLQAKIAHYFKNENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572 >gi|290579830|ref|YP_003484222.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254996729|dbj|BAH87330.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 671 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + EDL Y + + + MH +K E+ I++ + G D+LV ++ G+++P + Sbjct: 484 LEEDLKAY-FASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + I+DAD+ G + L Q GR R Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRG 566 >gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116] gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116] Length = 1153 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 61/299 (20%), Positives = 124/299 (41%), Gaps = 36/299 (12%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 L + G+ +A++ + ++++ P+ +A +L +E + F + VS + + Sbjct: 21 LGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 + Y D + + I+++I R+ T+S N +V + + + Q Sbjct: 76 ETLPY----DNFSPHQEIISDRIARLYQLPTQS----NGVTIVPVSTVLQRQSPRDFLLQ 127 Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352 + +K GD +L L Y+ D G + G +++FP D +R+ Sbjct: 128 HTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDF 186 Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412 F ++I+ I F P + I +++ I++ + PT A++ + + + Sbjct: 187 FDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRSQF----- 237 Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 EA+R + I M T G+ + Y + L + TLF+Y+PEDS L Sbjct: 238 -----EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQL 283 >gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Bacillus pumilus ATCC 7061] gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Bacillus pumilus ATCC 7061] Length = 496 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LTE L R +H ++ +R+ +R + G DVLV ++ GLDI Sbjct: 250 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDI-- 307 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 G+ + + D S I GRA R + + K + AI++TT+R+ Sbjct: 308 SGVTHVYNFDVPQDPESYVHRIGRTGRAGR--TGMAVTFITPREKDMLRAIEQTTKRK 363 >gi|239827402|ref|YP_002950026.1| type III restriction protein res subunit [Geobacillus sp. WCH70] gi|239807695|gb|ACS24760.1| type III restriction protein res subunit [Geobacillus sp. WCH70] Length = 813 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 10/133 (7%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ + + A+ L+EY +RN R +HS+ + R I L G+ D + ++L Sbjct: 450 RTLVFCSSIKQADFLSEYFRKRNYRTVSLHSKQTDIPRDRAIAMLEKGELDAIFTVDLFN 509 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQ 698 EG+DIP + + + S T Q +GR R K + L + ++ Sbjct: 510 EGVDIPSVDTLLFVRPTE-----SLTVFTQQVGRGLRLYEGKDYCVIIDLIGNYRNADVK 564 Query: 699 LAIDETTRRREKQ 711 LA+ +T R K+ Sbjct: 565 LALFDTERGEGKK 577 >gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 860 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK+MAED+ L+ I +H + + +R + D + +LV ++ Sbjct: 657 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 716 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP+ V D +E IGR R N K I A + +LA+D Sbjct: 717 GLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGN-KGIATAFYNRNNRRLALD 768 >gi|55823618|ref|YP_142059.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus CNRZ1066] gi|55739603|gb|AAV63244.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 672 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LTE+ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595 >gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica] Length = 485 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +IL+ TKR ++L + +R +H + ER +++D R G+ VLV ++ Sbjct: 301 KILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAA 360 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDI + G V D F + IGR AR Sbjct: 361 RGLDIDDIGTVINYD-----FPSQLEDYVHRIGRTARG 393 >gi|312279039|gb|ADQ63696.1| ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative [Streptococcus thermophilus ND03] Length = 672 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LTE+ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595 >gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970] gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970] Length = 1164 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLTGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V I++ + PT + A K + + + + + +A Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478 + G + Y L N E TLF+YI ED+L +D+ H Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 853 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 909 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 910 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 945 >gi|84627487|gb|AAI11751.1| Interferon induced with helicase C domain 1 [Homo sapiens] gi|119631757|gb|EAX11352.1| interferon induced with helicase C domain 1 [Homo sapiens] Length = 1025 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R GK ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876 >gi|218131363|ref|ZP_03460167.1| hypothetical protein BACEGG_02978 [Bacteroides eggerthii DSM 20697] gi|217986295|gb|EEC52632.1| hypothetical protein BACEGG_02978 [Bacteroides eggerthii DSM 20697] Length = 820 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 615 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLMAQVAG 674 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I SI Sbjct: 675 RAGRKNKRGRVVLQTKSIEHSI 696 >gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae] gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta] gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi] gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis] gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis] gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba] gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae] gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta] gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi] gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis] gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis] gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba] Length = 399 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|150020179|ref|YP_001305533.1| primosomal protein N' [Thermosipho melanesiensis BI429] gi|149792700|gb|ABR30148.1| primosomal protein N' [Thermosipho melanesiensis BI429] Length = 742 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII-RDLRLGKFDVLVGINLLREGLDIP 649 T+R+ + + RNI VR V+ ++ ++I + L G+ DVLVG ++ +GLD+P Sbjct: 511 TERIELEFQKLFPGRNI-VRVDTEVVRDFKKFQVILKKLYSGEIDVLVGTKMITKGLDVP 569 Query: 650 ECGLVAILDADKEGFLRSKTS-------LIQTIGRAAR 680 L+ ++D D + S L+Q +GRA R Sbjct: 570 TVNLIGVIDVDAIQNIPDYNSSLNLFRLLVQVVGRAGR 607 >gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster] gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster] Length = 399 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661] gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661] Length = 1147 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 59/300 (19%), Positives = 125/300 (41%), Gaps = 43/300 (14%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 +TG+ A++IE P +++AP+ A +LY E K F + ++ ++ + Sbjct: 22 LTGAACAVECAEIIERHPGPVMLIAPDMQNALRLYDEIKQFTDEPVMS--LADWETLPFD 79 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVESYS 291 ++ P D + S++ Q+ M +LL+R V S ++G V Sbjct: 80 SFSPHQDIISSRLSTLY-QLPMMERGVLILPVNTLLQR-----VCPHSFLHGHALV---- 129 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 +K G + + L S L + Y+ D + G + G ++++P D +R+ Sbjct: 130 -----MKKGQRLSRDTLRSQLEQAGYRHVDQVMEHGEYATRGALLDLYPMG-SDQPYRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 F ++I+ + F + + + V + + + T + + +E ++R Sbjct: 184 FFDDEIDSLRLFDVDSQRTLEEVPAVNLLPAHEFPTDKAAIELFRTQWREHFEVR----- 238 Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E++ + Q++ + G+ + Y + L +P P LF Y+PE++LL Sbjct: 239 -----RESEHIYQQV--------SKGTLPTGIEYWQPLFF---DQPLPALFSYLPENTLL 282 >gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM 44233] Length = 607 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L +G ++ V TK + + L R + M+ +V ER +II LR G+ DVL Sbjct: 260 LQVTEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVL 319 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V ++ GLD+ LV DA E + + IGR R + L Sbjct: 320 VATDVAARGLDVDRIDLVVNFDAPGE-----PEAYVHRIGRTGRAGRTGTAL 366 >gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba] gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba] Length = 962 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 +A G +I++ V TK ED+ + + +H + ER +++D R GK ++L+ Sbjct: 489 SANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILI 548 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + V D + S + + IGR R Sbjct: 549 ATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 586 >gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia] gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia] Length = 399 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|194468146|ref|ZP_03074132.1| helicase domain protein [Lactobacillus reuteri 100-23] gi|194452999|gb|EDX41897.1| helicase domain protein [Lactobacillus reuteri 100-23] Length = 443 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 18/201 (8%) Query: 525 TIVVSATPGSWELEQCQG--IIVEQI-IRPTGLVDPPVEIRSA---RTQVE------DVY 572 + ++ATPG L + + +IV + +R G + P +++R A R ++E V Sbjct: 235 CLYLTATPGDTLLREIKSKRLIVNYLPLRYHGHLLPEIKVRLAFGWRRRLERHQLPPQVI 294 Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 ++ ++G R LL V + L R+ +R+E ++ +R G Sbjct: 295 QQLQKTLKEGHRFLLFVPHIADLALVKAALQHSFTTFRFATVHASDPQRLEKVQKMRDGD 354 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILY 689 +D LV ++L G+ PE V +L AD F S ++L+Q GRA R +V+ + Sbjct: 355 YDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALVQIAGRAGRAQSRPTGRVVFW 411 Query: 690 ADTITKSIQLAIDETTRRREK 710 + I A+ + +K Sbjct: 412 INCNCHQINQAVSQVKYLNQK 432 >gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa] Length = 688 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L +N +H + ER + R G+ +L Sbjct: 448 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPIL 507 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 508 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 552 >gi|55821697|ref|YP_140139.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMG 18311] gi|55737682|gb|AAV61324.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] Length = 672 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LTE+ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595 >gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58] gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58] Length = 1379 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432 V I++ + PT + A K + + + + + +A Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243 Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478 + G + Y L N E TLF+YI ED+L +D+ H Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 1070 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1126 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1127 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1162 >gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704] gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704] Length = 1194 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%) Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 T ++ + DLR GK ++++ ++L EG+D+P C LV D F ++ S IQ GR Sbjct: 226 TKAQMTALDDLRNGKKNLIIATSVLEEGIDVPACDLVICFD-----FPQNLRSFIQRRGR 280 Query: 678 AARNVNSKVILYAD 691 AR SK L+ D Sbjct: 281 -ARKKGSKFALFVD 293 >gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436] gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436] Length = 528 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 +V I A ++GL ++ T TKR A L+E L R V +H ++ R + +R R Sbjct: 283 EVVARILQARERGLAVIFT-KTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFR 341 Query: 630 LGKFDVLVGINLLREGLDI 648 GK DVLV ++ G+D+ Sbjct: 342 SGKVDVLVATDVAARGIDV 360 >gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans] gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans] Length = 643 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL +N V +H ++K ER + + R G +LV + G Sbjct: 431 LVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 490 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 491 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 534 >gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis] Length = 546 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 36/68 (52%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L YL + + +H + ER E +RD R G VLV ++ Sbjct: 346 RTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSGLAPVLVATSVAA 405 Query: 644 EGLDIPEC 651 GLDIP+ Sbjct: 406 RGLDIPDV 413 >gi|57168600|ref|ZP_00367733.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228] gi|57020105|gb|EAL56782.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228] Length = 604 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKI 204 + P+ DQ A+ + + + S+E K ++++G G GKT + + + AI+MAP I Sbjct: 224 FSPTRDQLNALKDIEQDLGSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAILMAPTSI 283 Query: 205 LAAQLYSEFKNFFP 218 LA QLY E K P Sbjct: 284 LANQLYEEAKKLLP 297 >gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Schizosaccharomyces japonicus yFS275] gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Schizosaccharomyces japonicus yFS275] Length = 672 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 12/138 (8%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V KR E L + LY RV +H +R I LR D+LV +L Sbjct: 530 IVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRERAIEQLRNHSADILVATDLAGR 589 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-------YAD---TIT 694 G+DIP LV + K + T I GRA ++ + L Y D ++ Sbjct: 590 GIDIPNVSLVVNYNMAKS--IEDYTHRIGRTGRAGKHGTAITFLGPEDTGVYYDLRLMLS 647 Query: 695 KSIQLAIDETTRRREKQL 712 KS I E RR E L Sbjct: 648 KSANSHIPEELRRHEAAL 665 >gi|149180233|ref|ZP_01858738.1| DNA/RNA helicase [Bacillus sp. SG-1] gi|148852425|gb|EDL66570.1| DNA/RNA helicase [Bacillus sp. SG-1] Length = 814 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R A L++Y ++ + +HS+ K + R E IR L G D + ++L EG+DIP Sbjct: 453 RQAVFLSDYFNKKGYQTVSLHSQQKNISRKEAIRQLEDGILDAIFTVDLFNEGVDIPAVD 512 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 + + + S T Q IGR R +SK Sbjct: 513 TLLFVRPTE-----SLTVFTQQIGRGLRLHSSK 540 >gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster] Length = 399 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94] Length = 516 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila simulans] gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila ananassae] gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp. wRi] gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila ananassae] gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila simulans] gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp. wRi] Length = 402 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TKR A+ L L++ + +H +++ +R +I R G+ ++V ++ Sbjct: 237 IIIFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASR 296 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP V DA + S+ I IGR AR Sbjct: 297 GLDIPHIQHVINYDAPQ-----SQADYIHRIGRTAR 327 >gi|295689355|ref|YP_003593048.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431258|gb|ADG10430.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 732 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 23/177 (12%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ T+ L L ER V + E+ ER + ++ LR G V V ++ G Sbjct: 247 LVFANTRESVRGLHNKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARG 306 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705 LD+P+ GLV + +K +L+ GR R V L + T Sbjct: 307 LDLPDLGLVIHAE-----LPINKATLLHRSGRTGRAGKKGV----------SALVVPYTR 351 Query: 706 RRREKQL------EHNKKHNINPQSVKEKIMEVI--DPILLEDAATTNISIDAQQLS 754 RR+ +QL E + + S++EK E + DPI E A +I++ L+ Sbjct: 352 RRKAEQLLYAAGVEADWGGAPSADSIREKDQERLLEDPIFAEAATEEDIALAEAMLA 408 >gi|251783245|ref|YP_002997550.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391877|dbj|BAH82336.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 676 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 7/106 (6%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 ++ + R+ MH ++K E+ I++ + + D+LV ++ G+++P ++ I+DAD+ Sbjct: 497 FKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRF 556 Query: 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ--LAIDETT 705 G + L Q GR R + S IL A+ T+S + +AI TT Sbjct: 557 GL----SQLHQLRGRVGRGHKQSYAILVANPKTESGKERMAIMTTT 598 >gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365] gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365] Length = 1257 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 12/215 (5%) Query: 175 GVTGSGKTFTMAKVIE-AMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 G+T + A++ E A +R P +V+AP++ A L + F PH + Sbjct: 25 GLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVAFFLPHAQHAAAGTEPLA 84 Query: 232 YQPEAYVPRTDT--YIEKESSINEQIDRM----RHSATRSLLERNDCIVVSSVSCIYGIG 285 P ++P DT Y E RM R + +LL +V+S+ + + + Sbjct: 85 PPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALL--GPVVVLSAPALLRRVM 142 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 E+ L D ++ L++ Y R + GTF V G I++F + L Sbjct: 143 PREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFAVRGGVIDVF-TPLYR 201 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 R+ +FG+ +E I F P + + +R+++ + ++ Sbjct: 202 YPARIELFGDMVESIRLFDPESQRTLRDLDQVYVH 236 >gi|225439904|ref|XP_002279705.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 524 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 ILL V +K A++L L +IRV +H+++ +R + D R GK VL+ +++ Sbjct: 370 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 429 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S + I IGR+ R Sbjct: 430 GMDFK--GINCVINYD---FPDSPAAYIHRIGRSGR 460 >gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1] gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST26] gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293] gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1] gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293] gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST26] gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 525 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|68536289|ref|YP_250994.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411] gi|68263888|emb|CAI37376.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411] Length = 721 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 RV +H ++ ++ ++++D GK DVLV ++ G+D+P ++ IL+A+ GF Sbjct: 542 GCRVAMLHGKMDPADKDQVMQDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGF 600 >gi|116628420|ref|YP_821039.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9] gi|116101697|gb|ABJ66843.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9] Length = 672 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LTE+ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595 >gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius HKU10-03] gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius HKU10-03] gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus pseudintermedius ED99] Length = 495 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L + + +H ++ +R+E+++ + + D+LV ++ GLDI Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D S T I GRA + + + + + I I++T RR+ + Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--HGIAVTFVNPIEMDYIRQIEQTNRRQMR 364 Query: 711 QL 712 L Sbjct: 365 AL 366 >gi|190891737|ref|YP_001978279.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652] gi|190697016|gb|ACE91101.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652] Length = 701 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%) Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201 + P+ Q AIA +LK + E+ ++LL G GSGKT +MA VIE+ + A++MAP Sbjct: 272 FSPTSSQNEAIADILKDMAGTERMLRLLQGDVGSGKTLVALMSMAAVIESGGQ-AVLMAP 330 Query: 202 NKILAAQLYSEFKNF 216 +ILA Q ++ F Sbjct: 331 TEILARQHHATISKF 345 >gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1 Length = 671 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+ G L+ V TKR A++L+++L +N+ +H + ER + R G+ +L Sbjct: 444 LSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPIL 503 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 504 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 548 >gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted) [Schizosaccharomyces pombe 972h-] gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted) [Schizosaccharomyces pombe] Length = 394 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ ++R + LTE + E N V MH E+ ER I++D R Sbjct: 253 DLYDTLTIT-----QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFR 307 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D A++E + I IGR+ R Sbjct: 308 QGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENY-------IHRIGRSGR 353 >gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 578 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + D + A +G + ++ V TKR A+ L YLY+ +V +H + R + RD Sbjct: 375 EAILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGD-----RSQADRDF 429 Query: 629 RLGKF-----DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L +F +LV ++ GLDIP+ +V D E S + +GR R Sbjct: 430 SLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGR 481 >gi|322377446|ref|ZP_08051937.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334] gi|321281646|gb|EFX58655.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334] Length = 671 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + +V +H ++K+ E+ +I++D + K ++LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAKVALLHGKMKSDEKDQIMQDFKERKTNILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|302800610|ref|XP_002982062.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii] gi|300150078|gb|EFJ16730.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii] Length = 497 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 I+E+ G D + S++ Q+ DV DE A Q LR ++ V A+ LT L Sbjct: 281 ILEEKAILDGTADDQIRAISSKVQLLLDVLDEYKSA--QDLRCIVFVERVIAAKVLTLLL 338 Query: 603 YER-NIRVRYMHSEVKTLERIEI------IRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 R +R + + S L+ + + + D R GK +V+V N+ EGLDI C LV Sbjct: 339 NSRPYVRAQCVASHRNKLKGLTLATQRNSLEDFRAGKANVIVATNVAEEGLDIQSCSLVI 398 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + K ++ S IQ+ GRA + + VIL Sbjct: 399 RFNMPK-----TERSSIQSRGRARKQGSDYVIL 426 >gi|254557077|ref|YP_003063494.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|254046004|gb|ACT62797.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] Length = 447 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ TK ++LT YL ++ + V +H +++ ER ++RD++ K+ +V +L Sbjct: 247 VLIFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAAR 306 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690 G+DI G+ +++ D L I +GR RN + + LY+ Sbjct: 307 GIDIE--GVSHVINDDIPNDLE---FFIHRVGRTGRNGMAGTAITLYS 349 >gi|300779517|ref|ZP_07089375.1| possible helicase [Chryseobacterium gleum ATCC 35910] gi|300505027|gb|EFK36167.1| possible helicase [Chryseobacterium gleum ATCC 35910] Length = 1100 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 50/250 (20%) Query: 465 IPEDSLLFVDESHVTIPQI-SGMYRGDFHRKATLAEYGFRLPSCMDN-RPLRFEEWNCLR 522 I + + LF ++ PQI +G+ GD K + + L MD + +EWN ++ Sbjct: 238 IEDANSLFESNVIISTPQIITGILNGDVKIKTSFLNWCNLL--IMDEAHHSQAKEWNNIK 295 Query: 523 -------PTTIVVSATPGSWELEQCQGIIV--------------EQIIRPTGLVDPPVE- 560 ++ +ATP + ++ QG ++ +QI+ L P++ Sbjct: 296 VQLETYNKPILLFTATPFRNDKKRLQGKVIYDYPLSLAQRDNYYKQIVFHPILEFNPLKS 355 Query: 561 --------IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVR 610 I +E YD I +A V T AE++ E +Y+ + Sbjct: 356 DQLIAEKAISILEKDIEGKYDHILMAR---------VDTMSKAEEVFEKIYKPYQKYNPV 406 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 ++HS +K R +I+ D+ GK ++V +++L EG D+P+ + A+ D K + T+ Sbjct: 407 FIHSGIKQAIRKKILEDIIAGKHKIIVCVDMLGEGFDLPQLKICALHDLHK-----NITT 461 Query: 671 LIQTIGRAAR 680 Q GR R Sbjct: 462 SFQFFGRFTR 471 >gi|24380195|ref|NP_722150.1| putative ATP-dependent DNA helicase, RecG [Streptococcus mutans UA159] gi|24378200|gb|AAN59456.1|AE015010_5 putative ATP-dependent DNA helicase, RecG [Streptococcus mutans UA159] Length = 671 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + EDL Y + + + MH +K E+ I++ + G D+LV ++ G+++P + Sbjct: 484 LEEDLKAY-FASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + I+DAD+ G + L Q GR R Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRG 566 >gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 425 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 QG ++ V TKR A ++ + L +R+I R +H ++ +R +++ + GK LV Sbjct: 248 HQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLVAT 307 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 ++ G+DI + GLV + + S + IGR R A +I L Sbjct: 308 DVAARGIDIKDVGLVINYE-----LPENPESYVHRIGRTGR---------AGREGTAISL 353 Query: 700 AIDETTRR--REKQLEHNK 716 D RR R K L+H K Sbjct: 354 VADNEKRRIYRIKGLKHIK 372 >gi|323127969|gb|ADX25266.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 671 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 7/106 (6%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 ++ + R+ MH ++K E+ I++ + + D+LV ++ G+++P ++ I+DAD+ Sbjct: 492 FKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRF 551 Query: 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ--LAIDETT 705 G + L Q GR R + S IL A+ T+S + +AI TT Sbjct: 552 GL----SQLHQLRGRVGRGHKQSYAILVANPKTESGKERMAIMTTT 593 >gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans] Length = 708 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL +N V +H ++K ER + + R G +LV + G Sbjct: 496 LVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 555 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 556 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 599 >gi|260578990|ref|ZP_05846892.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734] gi|258602855|gb|EEW16130.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734] Length = 721 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 RV +H ++ ++ ++++D GK DVLV ++ G+D+P ++ IL+A+ GF Sbjct: 542 GCRVAMLHGKMDPADKDQVMQDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGF 600 >gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii] gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii] Length = 398 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G IL+ V T++ AE T Y+H + +R+EI++ R GK +L+ +L Sbjct: 241 GSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILIATDL 300 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP LV L+ D + + +GR AR Sbjct: 301 ASRGLDIPNVDLV--LNYDLPHLAK---EYLHRVGRTAR 334 >gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551] gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551] Length = 1206 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228 G+ GS +A+ +E + A ++A N + A +L E + F P V+ + Sbjct: 85 GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 144 Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 YD + P D E+ +++++ ++ A D ++V + + + I Sbjct: 145 PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPASTALQRIAPP 188 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + K G+ +++ L + Y+ + G + V G I++FP + Sbjct: 189 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 247 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 +R+ +FG++IE I F P T + + V +++ + Sbjct: 248 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 285 >gi|327188304|gb|EGE55523.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512] Length = 701 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%) Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201 + P+ Q AIA +LK + E+ ++LL G GSGKT +MA VIE+ + A++MAP Sbjct: 272 FSPTSSQNEAIADILKDMAGTERMLRLLQGDVGSGKTLVALISMAAVIESGGQ-AVLMAP 330 Query: 202 NKILAAQLYSEFKNF 216 +ILA Q ++ F Sbjct: 331 TEILARQHHATISKF 345 >gi|319956410|ref|YP_004167673.1| ATP-dependent DNA helicase recg [Nitratifractor salsuginis DSM 16511] gi|319418814|gb|ADV45924.1| ATP-dependent DNA helicase RecG [Nitratifractor salsuginis DSM 16511] Length = 606 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 152 DQPAAIAQLLKGIHSREKV--QLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQ 208 DQ IA++ K + +EK ++++G GSGKT +A + A +++MAP ILA Q Sbjct: 230 DQQKVIAEIQKDLSQKEKAARRMIIGDVGSGKTMVILAAAVMAGGDRSVLMAPTSILARQ 289 Query: 209 LYSEFKNFFP 218 LY E + P Sbjct: 290 LYEEACKYLP 299 >gi|312866410|ref|ZP_07726628.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415] gi|311098104|gb|EFQ56330.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415] Length = 677 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%) Query: 590 LTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 L + A+DL + L E +V MH +K E+ +I++D + G+ VLV ++ G+ Sbjct: 482 LDLKNAQDLHQELVEFFGNQAQVALMHGRMKNDEKDQIMQDFKDGQSQVLVSTTVIEVGV 541 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++P + I+DAD+ G + L Q GR R Sbjct: 542 NVPNSTAIIIMDADRFGL----SQLHQLRGRVGRG 572 >gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621] gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621] Length = 519 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 230 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDI-- 287 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 344 Query: 710 KQLE 713 +++ Sbjct: 345 DRMD 348 >gi|225163787|ref|ZP_03726086.1| primosomal protein N' [Opitutaceae bacterium TAV2] gi|224801617|gb|EEG19914.1| primosomal protein N' [Opitutaceae bacterium TAV2] Length = 769 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675 +++ + R GK D+LVG ++ +GLD P LV ++DAD + R+ L+Q Sbjct: 563 QLLSEFRAGKIDLLVGTQMIGKGLDFPNVTLVGLVDADISMHIPDFRANERTFQLLVQVA 622 Query: 676 GRAARN 681 GRA R Sbjct: 623 GRAGRG 628 >gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae] gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae] Length = 875 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V K +E+L L ++ +H ++ ER ++I D + V+V ++ Sbjct: 484 VLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIPVMVATDVAAR 543 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 GLDIP V D ++ + + T I GRA V L A++ QL Sbjct: 544 GLDIPSIKTVVNYDVARD--IDTHTHRIGRTGRAGNKVTDISTLKANSDNPLFQL 596 >gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] Length = 514 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 230 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 287 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 344 Query: 710 KQLE 713 +++ Sbjct: 345 DRMD 348 >gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138] gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata] Length = 604 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ LT++L +N + +H + ER + R G ++LV + G Sbjct: 399 LVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARG 458 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N V Sbjct: 459 LDIPNVTNVINYDLPTD-----IDDYVHRIGRTGRAGNVGV 494 >gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum CFBP2957] gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase [Ralstonia solanacearum CFBP2957] Length = 1147 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228 G+ GS +A+ +E + A ++A N + A +L E + F P V+ + Sbjct: 26 GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 85 Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 YD + P D E+ +++++ ++ A D ++V + + + I Sbjct: 86 PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPASTALQRIAPP 129 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + K G+ +++ L + Y+ + G + V G I++FP + Sbjct: 130 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 188 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 +R+ +FG++IE I F P T + + V +++ + Sbjct: 189 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 226 >gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni] gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni] Length = 395 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 254 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 309 AGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 354 >gi|325925019|ref|ZP_08186441.1| ATP dependent helicase, Lhr family [Xanthomonas perforans 91-118] gi|325544531|gb|EGD15892.1| ATP dependent helicase, Lhr family [Xanthomonas perforans 91-118] Length = 1464 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 252 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GR+ V K L+ T + ++ A+ ++ RR E Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403 >gi|302766077|ref|XP_002966459.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii] gi|300165879|gb|EFJ32486.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii] Length = 497 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 I+E+ G D + S++ Q+ DV DE A Q LR ++ V A+ LT L Sbjct: 281 ILEEKAILDGTADDQIRAISSKVQLLLDVLDEYKSA--QDLRCIVFVERVIAAKVLTLLL 338 Query: 603 YER-NIRVRYMHSEVKTLERIEI------IRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 R +R + + S L+ + + + D R GK +V+V N+ EGLDI C LV Sbjct: 339 NSRPYVRAQCVASHRNKLKGLTLATQRNSLEDFRAGKANVIVATNVAEEGLDIQSCSLVI 398 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + K ++ S IQ+ GRA + + VIL Sbjct: 399 RFNMPK-----TERSSIQSRGRARKQGSDYVIL 426 >gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia solanacearum IPO1609] gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia solanacearum IPO1609] Length = 1147 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228 G+ GS +A+ +E + A ++A N + A +L E + F P V+ + Sbjct: 26 GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 85 Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 YD + P D E+ +++++ ++ A D ++V + + + I Sbjct: 86 PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPASTALQRIAPP 129 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + K G+ +++ L + Y+ + G + V G I++FP + Sbjct: 130 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 188 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 +R+ +FG++IE I F P T + + V +++ + Sbjct: 189 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 226 >gi|38048047|gb|AAR09926.1| similar to Drosophila melanogaster CG9748 [Drosophila yakuba] Length = 159 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ N V +H + ER E +R R G +LV + G Sbjct: 64 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 123 Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D +D E + + IGR R N V Sbjct: 124 LDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGNLGV 159 >gi|62751389|ref|NP_001015545.1| RNA helicase LGP2 [Bos taurus] gi|59858269|gb|AAX08969.1| hypothetical protein FLJ11354 [Bos taurus] gi|296476327|gb|DAA18442.1| RNA helicase LGP2 [Bos taurus] Length = 680 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+I+ R G ++LV ++ EGLDIP+C +V + G L ++ S++Q GRA Sbjct: 425 EVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 475 >gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera] Length = 523 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 ILL V +K A++L L +IRV +H+++ +R + D R GK VL+ +++ Sbjct: 369 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 428 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S + I IGR+ R Sbjct: 429 GMDFK--GINCVINYD---FPDSPAAYIHRIGRSGR 459 >gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] Length = 669 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V T+ AE++ L R + + +V ER +I+ LR G VLV ++ G Sbjct: 327 IVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAARG 386 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 LD+ GLV D KE S + IGR R S L Sbjct: 387 LDVERIGLVVNFDVPKE-----AESYVHRIGRTGRAGRSGEAL 424 >gi|312963315|ref|ZP_07777798.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] gi|311282395|gb|EFQ60993.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] Length = 1415 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 12/160 (7%) Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612 PPV + + A E VYD + A++ L+ V T+R+AE L +L ER V Sbjct: 250 PPVPLSAVMANDVWELVYDRLATLAREHRTTLIFVNTRRLAERLARHLSERLGKTAVAAH 309 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H + R++ + L+ G+ VL+ L G+DI + LV + G S + Sbjct: 310 HGSLAKELRLDAEQRLKAGELQVLIATASLELGIDIGDVDLVCQI-----GSPGSINGFL 364 Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 Q +GR+ V K L+A T I+ A+ + RR E Sbjct: 365 QRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGE 404 >gi|296270745|ref|YP_003653377.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833] gi|296093532|gb|ADG89484.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833] Length = 725 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%) Query: 597 DLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 D+ L E R++R+ +H + E+ ++R G+ DVLV ++ G+D+P + Sbjct: 529 DVARMLGEGPLRDLRIGTLHGALPPEEKDAVMRAFSRGEIDVLVATTVIEVGVDVPNASV 588 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + I+DAD+ G + L Q GR R Sbjct: 589 MVIMDADRFGV----SQLHQLRGRVGRG 612 >gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223] gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223] Length = 1162 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 25/216 (11%) Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315 R+ + S +E+N IV+ V+ + ++Y S + LK GDS + ++ L Sbjct: 96 RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDT 153 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y + G F + G ++IFP+ + ++ R+ +F ++E I F P T + ++ V+ Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +I++ + PT ++A++ ++ + R + K E + + Q ++ +L Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRNL----- 258 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 IENY + TLF+Y+P+D+ L Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287 >gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTITKSIQLAIDETTR 706 VIL A + T +++ T R Sbjct: 551 AYHVILVAPSYTSPTVESVELTDR 574 >gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus] gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus] Length = 662 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 6/116 (5%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L + G R ++ V TK+ A+ L +L + N+ +H + + ER +RD R GK +L Sbjct: 482 LQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQIL 541 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691 V ++ GLDI V D + + IGR R N+ K + + D Sbjct: 542 VATSVASRGLDIENVQHVINFD-----LPNTIEDYVHRIGRTGRCGNTGKAVSFFD 592 >gi|325914735|ref|ZP_08177073.1| ATP dependent helicase, Lhr family [Xanthomonas vesicatoria ATCC 35937] gi|325539012|gb|EGD10670.1| ATP dependent helicase, Lhr family [Xanthomonas vesicatoria ATCC 35937] Length = 1464 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 252 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVAAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G+ VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAEQRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366 Query: 676 GRAARNVNS--KVILYADTITKSIQLA 700 GR+ V K L+ T + ++ A Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECA 393 >gi|227513124|ref|ZP_03943173.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577] gi|227083699|gb|EEI19011.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577] Length = 453 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ T++ E+LTEYL + ++V +H VK ER +I++ ++ F +V +L Sbjct: 246 VLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAAR 305 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690 G+DI V D E I +GR RN + + LY+ Sbjct: 306 GIDIEGVSQVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYS 349 >gi|159030760|emb|CAO88436.1| mfd [Microcystis aeruginosa PCC 7806] Length = 265 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 5/157 (3%) Query: 255 IDRMRHSATRSLL---ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 + +R S+ ++L+ E IV + + + E + Q +G +E K L + Sbjct: 107 LSALRRSSGQALISHQEAGIAIVTTEKALQPHLPPREVFEQYSDNFAVGRVIEAKNLDLT 166 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 L + Y+R + G + GD ++IFP E + R+ FG+++E++ EF P T + + Sbjct: 167 LARLGYERVSLVETEGQWSRRGDIVDIFPVSAE-LPVRLEFFGDELEKLREFDPATQRSL 225 Query: 372 RNVETIKIYANSHYVTPRPTL-NTAMKYIKEELKMRL 407 ++ + + S P+L T Y++ E + +L Sbjct: 226 DSIPNLLLTPTSFASIIAPSLPPTVADYLEAEEREKL 262 >gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A] gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A] Length = 1421 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%) Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H ++ E + + RLG+F++LV ++L EG+D+P C LV D + S I Sbjct: 464 HMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPS-----NIKSFI 518 Query: 673 QTIGRAARNVNSKVIL 688 Q GR AR V+S + L Sbjct: 519 QRRGR-AREVSSTLYL 533 >gi|157163925|ref|YP_001466408.1| res subunit family type III restriction enzyme [Campylobacter concisus 13826] gi|112801637|gb|EAT98981.1| ATP-dependent DNA helicase RecG [Campylobacter concisus 13826] Length = 606 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 137 DITFFQMQTDYHPSGDQPAAIAQL---LKGIHSREKVQLLLGVTGSGKTFT-MAKVIEAM 192 DI+ + + P+ DQ AI + L + ++ +V ++G GSGKT +A + Sbjct: 215 DISSWLNGLPFTPTNDQLNAINDIRDDLSAVQAKRRV--IMGDVGSGKTLVILAAALSVY 272 Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFP 218 + AI+MAP IL+ Q+Y+E K P Sbjct: 273 PQSAILMAPTSILSEQIYNEAKRLLP 298 >gi|106364397|dbj|BAE95223.1| ATP-dependent RNA helicase [unclutured Candidatus Nitrosocaldus sp.] Length = 589 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E++ R G++ +LV ++ EGLDI EC LV D + S +Q GR Sbjct: 452 EQVEVVERFRAGEYSILVATSVGEEGLDIAECNLVIFYDN-----VPSAIRFVQRKGRTG 506 Query: 680 RNVNSKVILYA--DTITKS 696 R + KVI+ DTI ++ Sbjct: 507 RRMPGKVIVLVAKDTIDEA 525 >gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens] Length = 411 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ ++ GLD+P+ L+ Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLI 349 >gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7] gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7] Length = 665 Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 447 EVEYVKEEFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSE 506 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I R GK D+LVG ++ +GLD P V D K+ + + IGR R Sbjct: 507 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 561 >gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603] gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603] Length = 1169 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 27/197 (13%) Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 VE + + L +GD ++ + L+ LV Y+R+ + G F + G I+I+P L Sbjct: 131 VEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGS 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT---LNTAMKYIKEEL 403 R+ +F +I+ I +F T + N+E++ I S Y+ L T +K E+ Sbjct: 189 PVRIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYEDT 248 Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPP 458 + ++E+ + DL+ ET S + E+ + L R + P Sbjct: 249 R---------------PKIEKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYDQP 291 Query: 459 PTLFEYIPEDSLLFVDE 475 T+ +Y D ++ VDE Sbjct: 292 STIIDYFANDVVIAVDE 308 >gi|257051395|ref|YP_003129228.1| type III restriction protein res subunit [Halorhabdus utahensis DSM 12940] gi|256690158|gb|ACV10495.1| type III restriction protein res subunit [Halorhabdus utahensis DSM 12940] Length = 449 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 VL + D L ER +R H E T ER EI+R R G + ++ N+L EG+D+ Sbjct: 336 VLVFTASTDFVYRLSERFLRPAITH-ETSTAERKEILRGFRTGAYSTVITANVLDEGIDV 394 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILY 689 P+ + +L S+ Q +GR R + +LY Sbjct: 395 PDANVAVLLAGSG-----SQREFTQRLGRILRPTEDGGRALLY 432 >gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri] Length = 801 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + L+ V KR A+ L YL E +H + ER E +RD + GK +L+ ++ Sbjct: 605 KTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAA 664 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP V D +S + IGR R N Sbjct: 665 RGLDIPNVKHVINYD-----LPQSIDEYVHRIGRTGRCGN 699 >gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia solanacearum MolK2] gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia solanacearum MolK2] Length = 1147 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228 G+ GS +A+ +E + A ++A N + A +L E + F P V+ + Sbjct: 26 GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 85 Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 YD + P D E+ +++++ ++ A D ++V + + + I Sbjct: 86 PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPAPTALQRIAPP 129 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + K G+ +++ L + Y+ + G + V G I++FP + Sbjct: 130 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 188 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 +R+ +FG++IE I F P T + + V +++ + Sbjct: 189 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 226 >gi|21243183|ref|NP_642765.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21108708|gb|AAM37301.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 1480 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 268 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 327 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G VLV L GLDI + LV L G RS + +Q Sbjct: 328 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 382 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GR+ V K L+ T + ++ A+ ++ RR E Sbjct: 383 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 419 >gi|77361708|ref|YP_341283.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76876619|emb|CAI87841.1| ATP-dependent DNA helicase recG [Pseudoalteromonas haloplanktis TAC125] Length = 673 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 46/245 (18%) Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 L+ +DE H R H++ +L E G R C P +V++ Sbjct: 373 LIIIDEQH----------RFGVHQRLSLREKG-RFGDCY--------------PHQLVMT 407 Query: 530 ATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAA-QQGLRI 585 ATP L +E + P G P + T+ D+ + LA +QG ++ Sbjct: 408 ATPIPRTLAMTAYADLETSVIDELPPGRT-PITTVALPDTRRGDIIKRVKLACHEQGRQV 466 Query: 586 LLT--------VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 VL + AED + L E + V +H +K E+ I+ + + G V Sbjct: 467 YWVCTLIDESEVLQCQAAEDSAQQLKEALPELNVSLIHGRMKATEKQAIMSEFKAGNIHV 526 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693 LV ++ G+D+P L+ I + ++ G L Q GR R + V+LY + Sbjct: 527 LVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYHAPL 582 Query: 694 TKSIQ 698 + + Q Sbjct: 583 SHTAQ 587 >gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160] gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase [Natronomonas pharaonis DSM 2160] Length = 845 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT-------LERIEIIRDL 628 L + G R+++ ++ AE LT +L E R++ K E+ E + Sbjct: 366 TLGIEGGERVIVFTESRDTAESLTAFLGEHFETRRFVGQGDKDGSDGMTQTEQKETLDAF 425 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 R G+F+VLV ++ EGLD+P+ LV + +G +RS IQ GR R + +V++ Sbjct: 426 RSGEFEVLVSTSVAEEGLDVPDVDLVLFYEPVPKG-IRS----IQRKGRTGRASDGRVVV 480 >gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum] gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum] Length = 2292 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ++I+ + D + G ++L+ N+L EG+DIPEC LV D+ + S SLIQ GR Sbjct: 460 KQIKRVDDFKNGSCEILIATNVLEEGIDIPECKLVICFDS-----IYSVRSLIQRRGRER 514 Query: 680 RNVN 683 N Sbjct: 515 TQTN 518 >gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 547 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR+A+DLT+YL + +H + + ER ++ + + G+ +++ ++ Sbjct: 361 KVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATDVAS 420 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691 GLD+ + V ++ D + I GRA R + + AD Sbjct: 421 RGLDVKDIAYV--INYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISAD 466 >gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 694 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 8/139 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 ++ V TK EDL + L R + ++ ++ +R + L+ G+ D+LV ++ Sbjct: 298 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 357 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA RN ++ IL+ K + AI+ Sbjct: 358 GLDVERISHVINYDIPHDTESYVHR----IGRTGRAGRNGDA--ILFMTPREKYLLRAIE 411 Query: 703 ETTRRREKQLEHNKKHNIN 721 + TR+ +Q+ +N Sbjct: 412 KATRQSVEQMHLPTAETVN 430 >gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta] gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta] Length = 955 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 +A G +I++ V TK ED+ + + +H + ER +++D R GK ++L+ Sbjct: 491 SANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILI 550 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ GLD+ + V D + S + + IGR R Sbjct: 551 ATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 588 >gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp. HTCC2649] gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp. HTCC2649] Length = 1204 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 35/234 (14%) Query: 177 TGSGKTFTMAKVIEAMQRPAIVMA---------PNKIL----------AAQLYSEFKNFF 217 TG G T T+ + A RPA++ A P+++ A L + Sbjct: 25 TGPG-TETLDVSVSAGARPALIAAAVERLRATAPDRLPLLVVTATSREAEDLTNALGCVL 83 Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS---LLERNDCIV 274 + + F S+ + E PR+DT + + + R+ H A+ + + +V Sbjct: 84 DPDVIADFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLTHPASVADDDVAHGPLSVV 138 Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 VS V + S+ V L+ G+ E++ +L Y R D+ RG F V G Sbjct: 139 VSPVRAVLQPISIGLGDLTPVALRAGEDHNLDEVVEALAGAAYSRTDLVERRGEFAVRGG 198 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 +++FP E+ RV +G+ IEEI F K+ + ++++ ++ + P Sbjct: 199 ILDVFPP-TEEHPLRVEFWGDTIEEIRWF------KVADQRSLEVASHGLWAPP 245 >gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01] gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01] Length = 528 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L ++ ++++ TKRM ++L + L R + +H + R II D R G ++L Sbjct: 366 LNEKKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNIL 425 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + ++ GLDI LV D F + + IGR AR Sbjct: 426 IATDVAARGLDIKNVALVINYD-----FPNNIEDYVHRIGRTAR 464 >gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 453 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ T++ E+LTEYL + ++V +H VK ER +I++ ++ F +V +L Sbjct: 246 VLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAAR 305 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690 G+DI V D E I +GR RN + + LY+ Sbjct: 306 GIDIEGVSQVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYS 349 >gi|190407384|gb|EDV10651.1| ATP-dependent RNA helicase DDX25 [Saccharomyces cerevisiae RM11-1a] gi|207341250|gb|EDZ69357.1| YOR046Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259149529|emb|CAY86333.1| Dbp5p [Saccharomyces cerevisiae EC1118] gi|323335582|gb|EGA76866.1| Dbp5p [Saccharomyces cerevisiae Vin13] gi|323352404|gb|EGA84939.1| Dbp5p [Saccharomyces cerevisiae VL3] Length = 482 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 394 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 429 >gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo] gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia bovis] Length = 402 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT + ER+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 277 TRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRVLITTDLLARGIDVQQ 336 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D S + I IGR+ R Sbjct: 337 VSLVINYD-----LPMSPDNYIHRIGRSGR 361 >gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195] gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195] gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678] Length = 1165 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 25/216 (11%) Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315 R+ + S +E+N IV+ V+ + ++Y S + LK GDS + ++ L Sbjct: 96 RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDT 153 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y + G F + G ++IFP+ + ++ R+ +F ++E I F P T + ++ V+ Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +I++ + PT ++A++ ++ + R + K E + + Q ++ +L Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRNL----- 258 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 IENY + TLF+Y+P+D+ L Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287 >gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl-2; Includes: RecName: Full=ATP-dependent helicase dcl-2 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa] Length = 1540 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%) Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H ++ E + + RLG+F++LV ++L EG+D+P C LV D + S I Sbjct: 466 HMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPS-----NIKSFI 520 Query: 673 QTIGRAARNVNSKVIL 688 Q GR AR V+S + L Sbjct: 521 QRRGR-AREVSSTLYL 535 >gi|84498316|ref|ZP_00997113.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] gi|84381816|gb|EAP97699.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] Length = 735 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R+ DL + + +H + E+ I+RD G DVLV ++ G+D+P Sbjct: 539 RVHADLVANPALEGLSIEILHGRLPADEKDAIMRDFASGAIDVLVSTTVIEVGVDVPNAS 598 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ ++DAD+ G + L Q GR R Sbjct: 599 VMVVMDADRFGV----SQLHQLRGRVGRG 623 >gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1158 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 65/322 (20%), Positives = 128/322 (39%), Gaps = 35/322 (10%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 SR K LL GV + + + +P +++ N+ A + Y++ + +E F Sbjct: 21 SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285 + T T + ++ +I L R ++ + Y + Sbjct: 81 ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 + + + +GD + +L L + Y R+++ + G F + GD ++++P E Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 R+ FG++I+ I F LT Q R++E + P T+ A ++ Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 +L++ GR L A L + LE+ E + Q ++ RYL P +L +Y Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCDRYLDYLLP--ESFSLLDY 286 Query: 465 IPEDSLLFVDESHVTIPQISGM 486 +P LL ++ + + M Sbjct: 287 LPAKGLLLFNDWQLIAESVKNM 308 >gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582] gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582] Length = 1159 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 54/296 (18%), Positives = 127/296 (42%), Gaps = 35/296 (11%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 +TGS A++IE P +++AP+ A +L E + F + VS ++ Sbjct: 32 LTGSACAVECAEIIERHNGPVMLIAPDMQNALRLRDEIQQF-----TDQMVSTLSDWETL 86 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 Y D++ + I+ ++ + H T + I++ + + + E + Sbjct: 87 PY----DSFSPHQEIISARLSSLYHLPTMA----RGVIILPVNTLMQRVCPHEFLHGHAL 138 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 ++ G + + +L + L + Y+ D + G F G ++++P E+ +R+ F + Sbjct: 139 VMQKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 197 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ + F + + + VE I + + T + + +E+ ++R Sbjct: 198 EIDSLRIFDVDSQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWREQFEVR--------- 248 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 +A+ + Q++ + G+ + Y + L +P P+LF Y+P+++L+ Sbjct: 249 -RDAEHIYQQV--------SKGTWPAGIEYWQPLFF---SQPLPSLFSYLPDNTLI 292 >gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185] gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2] gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W] gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W] gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2] gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185] gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 525 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|323340157|ref|ZP_08080421.1| competence protein FA [Lactobacillus ruminis ATCC 25644] gi|323092348|gb|EFZ34956.1| competence protein FA [Lactobacillus ruminis ATCC 25644] Length = 472 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 ERIE ++ +R GK+ LV +L G+ P+ V +L AD F + +L+Q GRA Sbjct: 376 ERIEKVQAMRDGKYRYLVTTTILERGVTFPKLN-VLVLCADASEF--NLPALVQIAGRAG 432 Query: 680 RNV---NSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 R+ + V + D TK I+ +I++ R K + K Sbjct: 433 RSSERPDGHVRFFCDNYTKRIKGSIEQIKRMNRKARRYCK 472 >gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 465 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK A+ + + L IR H E+ R E + D R G+ LV ++ Sbjct: 249 VMVFVATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQALVATDVAAR 308 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 G+DI L A+++ D RS IGR R ++V+ Sbjct: 309 GIDIAR--LPAVVNYD---LPRSAVDYTHRIGRTGRAARAQVL 346 >gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264] gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550] gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264] gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550] gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 533 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|160947391|ref|ZP_02094558.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270] gi|158446525|gb|EDP23520.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270] Length = 675 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 5/101 (4%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 Y +++ + ++H ++K +++ I++D GK VLV ++ G+++P ++ I +A++ Sbjct: 489 YFQDVEIEFIHGKLKPVDKDRIMKDFENGKIKVLVATTVIEVGINVPNSNIMVIYNAERF 548 Query: 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702 G + L Q GR R N S IL ++ + +++ +D Sbjct: 549 GL----SQLHQLRGRIGRGNYESFCILVSNNKSTNVKKRMD 585 >gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L] gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L] Length = 528 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362 >gi|288920380|ref|ZP_06414691.1| helicase domain protein [Frankia sp. EUN1f] gi|288348257|gb|EFC82523.1| helicase domain protein [Frankia sp. EUN1f] Length = 322 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK ED+ E L R ++ ++ +R ++I LR G D+LV ++ Sbjct: 6 MIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAAR 65 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + + +L K + AI+ Sbjct: 66 GLDVERVTHVVNYDIPTDPESYVHR----IGRTGRAGR--SGEALLLVTPREKGLLAAIE 119 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 + TR+ ++E ++N + V + Sbjct: 120 KATRQPLAEMELPTAEDVNARRVAK 144 >gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS6180] gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes MGAS6180] Length = 1167 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 45/209 (21%), Positives = 96/209 (45%), Gaps = 12/209 (5%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL++G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 26 QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 ++ + ++K S E + + + ++ +L + +S + + V + Sbjct: 84 DVAAAEFIFAS---MDKALSRIETLQFLGNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 SQ +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379 FG+DI+ I +F+P T + +E + I Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGVFI 222 >gi|85001586|ref|XP_955506.1| dead box RNA helicase [Theileria annulata strain Ankara] gi|65303652|emb|CAI76030.1| dead box RNA helicase, putative [Theileria annulata] Length = 654 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ K A+ LT L R R +H +R I+ R G+F++LV ++ Sbjct: 513 KVLIFSDLKSFADQLTSALRYRRFRAYSLHGNKTQNQRERILNMYRSGEFNILVATDVAA 572 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY--ADTITKS-IQL 699 GLDI + V LD K S I IGR R N + +LY DT++ S ++ Sbjct: 573 RGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGNNKGESLLYFPIDTLSPSKVKF 627 Query: 700 AID 702 A D Sbjct: 628 AQD 630 >gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] Length = 719 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 11/155 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TK+ E++ + L R + ++ ++ R + LR G+ D+LV ++ Sbjct: 376 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 435 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ LV D D E ++ I GRA R + + IL+ K + I+ Sbjct: 436 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--DGEAILFVTPREKYMLRQIE 489 Query: 703 ETTRRREKQLEHNKKHNINP---QSVKEKIMEVID 734 + TR++ + + ++N Q E+I E I+ Sbjct: 490 KATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIE 524 >gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] Length = 558 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ K+ + +++ L I MHS++ +R E++ + G+ DVLV ++L Sbjct: 247 RVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQIDVLVATDILS 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + +V D D E + + IGR AR Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338 >gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta] Length = 411 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V KR A+ L YL + +H + ER E +RD + GK VL+ N+ Sbjct: 218 RVLVFVGQKRNADFLASYLSQSGYPTTTIHGDRLQREREEALRDFKSGKSPVLIATNVAA 277 Query: 644 EGLDIPE 650 GLDIP+ Sbjct: 278 RGLDIPD 284 >gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura] gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis] gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura] gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis] Length = 399 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358 >gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405] gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057] Length = 523 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R S + A +Q+ I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361 Query: 709 EKQLE 713 K L+ Sbjct: 362 MKGLK 366 >gi|239813341|ref|YP_002942251.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] gi|239799918|gb|ACS16985.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 424 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V T+ A+ + E LY+ + H ++ R I+ + ++DV++ +L Sbjct: 247 RVLVFVATQHAAQTVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLAA 306 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + +V D RS T I IGR R S + + Sbjct: 307 RGIDIAQLPVVINYD-----LPRSPTDYIHRIGRTGRAGESGLAI 346 >gi|156553129|ref|XP_001599839.1| PREDICTED: similar to eukaryotic translation initiation factor 4A [Nasonia vitripennis] Length = 423 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 56/98 (57%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LT+++++++ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTDHMHQKDFTVSAMHGDMEQRERDLIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374 >gi|148994014|ref|ZP_01823370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68] gi|168488586|ref|ZP_02712785.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195] gi|147927481|gb|EDK78509.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68] gi|183572842|gb|EDT93370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195] gi|332072525|gb|EGI83008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17570] Length = 671 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + K D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FACKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1] gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1] Length = 1164 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 36/305 (11%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 ++Q L + G G+ T+A +I Q +++ + A L E A++ + Sbjct: 17 QMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRLFP 76 Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P +++ P D ++ +++ QI HS +V+ V+ + Sbjct: 77 DRETLPYDSFSPHQDLISQRLETLS-QITHAEHS-----------VVIVPVTTLMMRLPP 124 Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +SY S + LK GD + ++ L Y + G F + G ++IFP+ + ++ Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +++E I F P T + V +++ + PT ++A++ ++ + R Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + K E + + Q ++ +L IENY + TLF+Y+P Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVSTLFDYLP 282 Query: 467 EDSLL 471 +++ L Sbjct: 283 KNTQL 287 >gi|6324620|ref|NP_014689.1| Dbp5p [Saccharomyces cerevisiae S288c] gi|1708152|sp|P20449|DBP5_YEAST RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD box protein 5; AltName: Full=Helicase CA5/6; AltName: Full=Ribonucleic acid-trafficking protein 8 gi|160380623|sp|A6ZNQ1|DBP5_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD box protein 5; AltName: Full=Helicase CA5/6; AltName: Full=Ribonucleic acid-trafficking protein 8 gi|1353268|gb|AAB01679.1| Dbp5p [Saccharomyces cerevisiae] gi|1420175|emb|CAA99237.1| DBP5 [Saccharomyces cerevisiae] gi|151945675|gb|EDN63916.1| RNA helicase [Saccharomyces cerevisiae YJM789] gi|285814935|tpg|DAA10828.1| TPA: Dbp5p [Saccharomyces cerevisiae S288c] Length = 482 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 394 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 429 >gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis str. A2012] gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42] gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201] gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 4342] gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1] gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066] gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055] gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North America USA6153] gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B] gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum] gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI] gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus thuringiensis str. Al Hakam] gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1] gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 4342] gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201] gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42] gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI] Length = 528 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|323346496|gb|EGA80783.1| Dbp5p [Saccharomyces cerevisiae Lalvin QA23] Length = 458 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 316 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 375 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 376 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 411 >gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893] gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893] Length = 403 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 261 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 316 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361 >gi|126434504|ref|YP_001070195.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS] gi|126234304|gb|ABN97704.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS] Length = 741 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ MH + E+ ++ R G+ DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 560 GLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 618 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R + + L A Sbjct: 619 ---SQLHQLRGRIGRGSHPSLCLLA 640 >gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4] gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4] Length = 1526 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L + +H + ER + R G++ +LV + G Sbjct: 450 LIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARG 509 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 510 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 545 >gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517] gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517] Length = 403 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 261 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 316 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361 >gi|285017596|ref|YP_003375307.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73] gi|283472814|emb|CBA15319.1| probable atp-dependent dna helicase protein [Xanthomonas albilineans] Length = 715 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 10/127 (7%) Query: 566 TQVEDVYD-EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624 T +ED D E + A G R+ + + E L+ L E +RV H +K+ E+ Sbjct: 501 TLIEDAEDAETSAQAGAGNRLEASA-AQATFETLSAQLPE--LRVGLAHGRMKSAEKQAA 557 Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--V 682 +R + G+ D+LV ++ G+D+P L+ I +A++ G L Q GR R V Sbjct: 558 MRAFKQGEIDLLVATTIIEVGVDVPNASLMIIENAERLGL----AQLHQLRGRVGRGAAV 613 Query: 683 NSKVILY 689 +S V++Y Sbjct: 614 SSCVLMY 620 >gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] Length = 531 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 9/108 (8%) Query: 549 IRPTGLVDPPVEIRSARTQV--------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600 IR D V ++S R V +V I A +GL I+ T TKR A L E Sbjct: 249 IRAADPSDTGVTVKSVRQVVYRCHALNKSEVLARILQAKGRGLTIVFT-RTKRTAARLAE 307 Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 L ER +H ++ R + +R R GK DVLV ++ G+D+ Sbjct: 308 ELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDV 355 >gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 517 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676] gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676] Length = 525 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi] Length = 403 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH +V ER +I+++ R Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFR 316 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 317 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 362 >gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15] gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-Cer4] gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST24] gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST24] gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-Cer4] gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15] gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 533 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363 Query: 710 KQLE 713 +++ Sbjct: 364 DRMD 367 >gi|62327127|ref|YP_223915.1| putative helicase [Lactobacillus phage phiJL-1] gi|37930144|gb|AAP74542.1| putative helicase [Lactobacillus phage phiJL-1] Length = 467 Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 11/134 (8%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+ G + +L + A+ E + + + ER II D R GK VL Sbjct: 207 LSNANGKQAILYAHSVEYAKKYAVAFEEAGVNAASVDGKTPKAERDRIINDFRSGKLKVL 266 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI---QTIGRAARNVNSKVILYADTI 693 +L+ EG D+P C +V + R SL+ Q R R VN K + D + Sbjct: 267 CNNDLISEGFDVPNCEVVIM--------CRPTASLVLYLQQSMRCMRYVNGKQAMIIDHV 318 Query: 694 TKSIQLAIDETTRR 707 ++ + + R+ Sbjct: 319 GNYVRFGLPDDDRQ 332 >gi|322373680|ref|ZP_08048216.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150] gi|321278722|gb|EFX55791.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150] Length = 672 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LTE+ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATV 543 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595 >gi|282909801|ref|ZP_06317610.1| helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|283959265|ref|ZP_06376706.1| putative helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|282326375|gb|EFB56679.1| helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|283788857|gb|EFC27684.1| putative helicase [Staphylococcus aureus subsp. aureus A017934/97] Length = 678 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] Length = 613 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 11/154 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK AE+L L R +H ++ R + LR G+ D+L+ +++ Sbjct: 250 VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 309 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + IL+ + + AI+ Sbjct: 310 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGR--KGEAILFVAPRERRMLRAIE 363 Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVI 733 TR+ + ++ +IN + KE+I E + Sbjct: 364 HATRQAIEPMKMPSTEDINQHRMTKFKERIRETM 397 >gi|332995152|gb|AEF05207.1| type III restriction protein res subunit [Alteromonas sp. SN2] Length = 1098 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L ++++ A+ + +Y E + +HS+ + L R E + L GK VL ++L EG Sbjct: 447 LAFCVSRQHADYMAKYFNENGVSAASVHSDSE-LTRTEALEGLSDGKIKVLFSVDLFNEG 505 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 +D+P+ V +L + SK +Q +GR R K Sbjct: 506 VDLPQIDTVLLLRPTE-----SKILFLQQMGRGLRRSEGK 540 >gi|326797348|ref|YP_004315168.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1] gi|326548112|gb|ADZ93332.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1] Length = 693 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 L + AED L E+ N++V +H +K E+ +I+ + G+ D+LV ++ G+ Sbjct: 498 ALQCQAAEDTALLLQEQLTNLKVGLVHGRLKAQEKADIMALFKAGEIDLLVATTVIEVGV 557 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689 D+P L+ I + ++ G L Q GR R + V+LY Sbjct: 558 DVPNSSLMVIENPERLGL----AQLHQLRGRVGRGTTASHCVLLY 598 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%) Query: 144 QTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTF----TMAKVIEAMQRPAIV 198 Q + P+G Q +++L + S ++L+ G GSGKT T A V++ + AI Sbjct: 265 QLPFSPTGAQSRVFSEVLADMSSGHPMLRLVQGDVGSGKTLVAGMTAAAVVQKGYQVAI- 323 Query: 199 MAPNKILAAQLYSEFKNFF 217 MAP +ILA Q Y FKN+F Sbjct: 324 MAPTEILAEQHYLNFKNWF 342 >gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi] Length = 395 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + +A ++ T++ E L + + + V MH ++ ER EI+R+ R Sbjct: 254 DLYDTLTIA-----HAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GK VL+ +L G+D+ + LV D S+ I IGR R Sbjct: 309 EGKSRVLISTDLWSRGIDVEQVSLVLNYD-----LPFSREQYIHRIGRTGR 354 >gi|282600913|ref|ZP_05980107.2| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM 15176] gi|282570824|gb|EFB76359.1| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM 15176] Length = 694 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ +H ++K E+ E+++ + G+ DVLV ++ G+D+P + I +A++ G Sbjct: 516 RIGLLHGKMKPKEKDEVMQQFKAGELDVLVSTTVIEVGVDVPNATAMVIENAERFGL--- 572 Query: 668 KTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698 ++L Q GR R +S IL +D S++ Sbjct: 573 -SALHQLRGRVGRGAADSCCILISDNENDSVR 603 >gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM 2048] gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603] gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603] gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM 2048] Length = 538 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L R +H ++ +R+ ++R + G +VLV ++ GLDI Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708 G+ + + D + S + IGR R + + T +S QL I+ TT+R+ Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362 >gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori] Length = 468 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%) Query: 561 IRSARTQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 + A T VE ++ E+ + G RIL+ V TKR A+ + L E+ + Sbjct: 266 VGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT 325 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 +H + ER E +++ + GK +LV + GLDI +V D K S Sbjct: 326 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-----SID 380 Query: 670 SLIQTIGRAARNVN-SKVILYADT 692 + IGR R N K + + D+ Sbjct: 381 EYVHRIGRTGRVGNRGKAVSFYDS 404 >gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980] gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1867 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 + D R GK + L+ ++ EGLDIP+C LV D + IQ+ GR AR+VNS Sbjct: 835 MHDFRNGKINCLIATSVAEEGLDIPDCNLVVRFD-----LYSTVIQYIQSRGR-ARHVNS 888 Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEH 714 + ++ + + I E + EK L+H Sbjct: 889 RYYHMVESHNEEQRRTIKEVL-KHEKLLKH 917 >gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 417 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V +KR A ++ LY I+ +H ++ ER+ + D G+ +L+ +L Sbjct: 247 QLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLAA 306 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+DIP L +L+ D R+ + + GR AR Sbjct: 307 RGIDIPS--LPCVLNYD---LPRATSDYVHRAGRTAR 338 >gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus fumigatus Af293] gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus fumigatus Af293] Length = 505 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 342 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 396 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++E + I IGR+ R Sbjct: 397 QGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY-------IHRIGRSGR 442 >gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 401 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + ++ TKR LTE + + N V MH ++ ER EI++D R Sbjct: 260 DLYDTLTVTQS-----VIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ +L G+D+ + LV D ++ I IGR+ R Sbjct: 315 AGDSRVLITTDLWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 360 >gi|228477237|ref|ZP_04061875.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126] gi|228251256|gb|EEK10427.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126] Length = 676 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LT++L + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 489 LHQELTDFLGD-SATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 547 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 548 MVIMDADRFGL----SQLHQLRGRVGRGHKQSYCVLVANPKNDTGKKRMQ-AMCETT 599 >gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402] gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 498 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L + R +H ++ +R+E+++ + + D+LV ++ GLDI Sbjct: 249 TKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 G+ + + D + S T I GRA ++ Sbjct: 307 SGVTHVYNFDIPQDVESYTHRIGRTGRAGKH 337 >gi|325283038|ref|YP_004255579.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP] gi|324314847|gb|ADY25962.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP] Length = 786 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 7/106 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +AE+L E L E R+ +H ++ E+ +I+ R FD+LV ++ G+D+P + Sbjct: 594 LAENLAEMLPE--ARIGLLHGKMTAAEKDDIMASFRRHDFDLLVSTTVIEVGVDVPNATV 651 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ 698 + I +A++ G + L Q GR R ++ S +L A ++K + Sbjct: 652 MVIENAERFGL----SQLHQLRGRVGRGSLQSYCVLIAGEMSKKTE 693 >gi|323349203|gb|EGA83433.1| Irc3p [Saccharomyces cerevisiae Lalvin QA23] Length = 570 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL + K + L + + I Y+ S+ K +ER II+ + G+ +VL+ + EG Sbjct: 163 LLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFKNGETEVLMNCGIFTEG 222 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D+P + + K S++ LIQ IGR R +SK Sbjct: 223 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 257 >gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1] gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1] Length = 599 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 12/128 (9%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 V+ RS + +D NL L+ V TKRMA+ L+++L + +H + Sbjct: 440 VDKRSVLLDILHTHDPTNLT-------LVFVETKRMADSLSDFLINQGFPATSIHGDRTQ 492 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 ER + + R G+ +LV + GLDIP V D + + IGR Sbjct: 493 REREKALEMFRNGRCPILVATAVAARGLDIPHVKHVVNYDLPTD-----IDDYVHRIGRT 547 Query: 679 ARNVNSKV 686 R N+ + Sbjct: 548 GRAGNTGI 555 >gi|195572988|ref|XP_002104477.1| GD18428 [Drosophila simulans] gi|194200404|gb|EDX13980.1| GD18428 [Drosophila simulans] Length = 690 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 607 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 608 AYHVILVAPSYTSPTVESVQL 628 >gi|165972365|ref|NP_001107132.1| Fanconi anemia, complementation group M [Danio rerio] gi|126843130|gb|ABO27624.1| Fanconi anemia M [Danio rerio] Length = 1761 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E++ R G F+ LV + EGLDI E L+ DA K S L+Q +GR Sbjct: 483 EQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQK-----SPIRLVQRMGRTG 537 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 538 RQRQGRIVV 546 >gi|7770712|gb|AAF69763.1| similar to RAD25 [Synechocystis sp. PCC 9413] Length = 449 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 25/173 (14%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LR+L+ +L + A++ T Y + + + + + ER EI+ Sbjct: 265 EIALITDGKLRVLINLLGQHYPESTIIFTADNATVYKISKALLIPAITHQTPVKERHEIL 324 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 + G + L+ ++L EG+D+PE + +L S+ IQ +GR R N Sbjct: 325 TRFKAGDYKTLIASHVLNEGVDVPEARIAIVLSGTG-----SRREYIQRLGRVLRKGQND 379 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735 + ILY + I + ++E T R + L+ + + S+++ +E+I+P Sbjct: 380 QKQAILY-EVIAED---TVEEGTSARRRGLDRDGEEK---SSIRQ--LELINP 423 >gi|330832312|ref|YP_004401137.1| type III restriction protein res subunit [Streptococcus suis ST3] gi|329306535|gb|AEB80951.1| type III restriction protein res subunit [Streptococcus suis ST3] Length = 957 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A++L R +R R + E ER +++DL G D ++ +++ EG+DIP V Sbjct: 462 AKELEGQFNARGLRTRALSGEHSQKERQRVVQDLENGNLDYILTVDIFNEGIDIPSVNQV 521 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 +L +S IQ +GR R +SK Sbjct: 522 VMLRN-----TQSSIIFIQQLGRGLRKHDSK 547 >gi|227524339|ref|ZP_03954388.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290] gi|227088570|gb|EEI23882.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290] Length = 453 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ T++ E+LTEYL + ++V +H VK ER +I++ ++ F +V +L Sbjct: 246 VLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAAR 305 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690 G+DI V D E I +GR RN + + LY+ Sbjct: 306 GIDIEGVSQVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYS 349 >gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131] gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131] Length = 1139 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 45/206 (21%), Positives = 95/206 (46%), Gaps = 12/206 (5%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 +G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 1 MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFADDVA 58 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 ++ + ++K S E + +R+ ++ +L + +S + + V + SQ Sbjct: 59 AAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTKSQ- 110 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 +QL +G++ + L L+ Y++ I G F GD ++I+ +++ +R+ F Sbjct: 111 -IQLTVGENYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRLEFF 168 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKI 379 G+DI+ I +F+P T + +E I I Sbjct: 169 GDDIDSIRQFHPETQKSFEQLEGIFI 194 >gi|21232667|ref|NP_638584.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767279|ref|YP_242041.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. campestris str. 8004] gi|21114475|gb|AAM42508.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572611|gb|AAY48021.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] Length = 713 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 537 GVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAERLGL- 595 Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTIT 694 L Q GR R +S V+LY ++ Sbjct: 596 ---AQLHQLRGRVGRGAAASSCVLLYQGPLS 623 >gi|322692486|gb|EFY84394.1| DEAD/DEAH box helicase [Metarhizium acridum CQMa 102] Length = 585 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT E R++ + ER EI+ D + G F VLV + EG DIP + + Sbjct: 233 LTRKFREYGYDARFVTGDTPKQERSEILHDFKKGCFPVLVNCGVFTEGTDIPNIDCIVLG 292 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 RS+ L+Q IGR R Sbjct: 293 RP-----TRSRNLLVQMIGRGMR 310 >gi|317476390|ref|ZP_07935639.1| primosomal protein N [Bacteroides eggerthii 1_2_48FAA] gi|316907416|gb|EFV29121.1| primosomal protein N [Bacteroides eggerthii 1_2_48FAA] Length = 536 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 331 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLMAQVAG 390 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I SI Sbjct: 391 RAGRKNKRGRVVLQTKSIEHSI 412 >gi|315194991|gb|EFU25379.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00] Length = 953 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi] Length = 400 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 259 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 314 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 359 >gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74] gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74] Length = 1108 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 23/242 (9%) Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211 D PA +A+ +K + + + + + F +A + +R + + A L + Sbjct: 15 DDPA-LAEAVKAAGDGHRTRADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 73 Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271 + P V F S+ + E PR+DT + + + R+ H Sbjct: 74 ALRTLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 128 Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 +VV+ + + G+G +E V L+ G S + +E++ +L Y R ++ R Sbjct: 129 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGRSADLQEIVQALAAAAYARVELVEKR 183 Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 G F V G +++FP E+ RV +G+++EEI F K+ + +++I + + Sbjct: 184 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KVADQRSLEIAEHGLWA 236 Query: 387 TP 388 P Sbjct: 237 PP 238 >gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 1158 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 4/137 (2%) Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELL 309 + ++I+ + A+ + IV+++V+ +SY ++ + + +G ++E L Sbjct: 82 VGQRIETLARLASEPAALTANTIVLTTVNAFLQRVPPQSYFAESSLHITVGQTIEPSALA 141 Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTG 368 + LV Y R D G F V G +++F P H V R+ FG+DIE + F P Sbjct: 142 TFLVNNAYLRTDTVRETGEFAVRGGIVDVFPPGHANPV--RLDFFGDDIETMRSFDPSNQ 199 Query: 369 QKIRNVETIKIYANSHY 385 + I + + ++ + + Sbjct: 200 RSIGKADRLTLHPVAEF 216 >gi|28378872|ref|NP_785764.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|300768022|ref|ZP_07077928.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28271709|emb|CAD64615.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|300494371|gb|EFK29533.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 447 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ TK ++LT YL ++ + V +H +++ ER ++RD++ K+ +V +L Sbjct: 247 VLVFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAAR 306 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690 G+DI G+ +++ D L I +GR RN + + LY+ Sbjct: 307 GIDIE--GVSHVINDDIPNDLE---FFIHRVGRTGRNGMAGTAITLYS 349 >gi|88856719|ref|ZP_01131374.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1] gi|88814016|gb|EAR23883.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1] Length = 724 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 R+ +H ++ + E+ E++R G DVLV ++ G+D+P ++ +LDAD+ G Sbjct: 542 RIEALHGKLSSDEKDELMRAFAAGDIDVLVATTVIEVGVDVPNASVMVVLDADRFG 597 >gi|332372808|gb|AEE61546.1| unknown [Dendroctonus ponderosae] Length = 423 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++++ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKKDFTVSAMHGDMEQKERDVIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + LV Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLV 361 >gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC BAA-1200] gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC BAA-1200] Length = 1290 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 17/210 (8%) Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P +++ P+ A +L + ++ F P + F+ ++ E + P D E+ S + + Sbjct: 36 PKLILTPDAETALRLQTAWQFFRPEDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQL 94 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 + + H+ + V + + + LK G ++ L +LV+ Sbjct: 95 KNGLAHA-----------LFVPVSTAMQRLAPAPFLLGRTFWLKTGQRLDIAALRQNLVE 143 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y + G F V G +++FP+ D +R+ +F ++I+ I F P + + I V Sbjct: 144 AGYSAVSNVVAGGEFAVRGGIVDLFPTG-SDTPYRIDLFDDEIDSIKTFDPDSQRTIAPV 202 Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 203 SEIRLLPAHEF----PTDDAAQKIFRSRFR 228 >gi|282906829|ref|ZP_06314677.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282329728|gb|EFB59249.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus Btn1260] Length = 953 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J] gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J] Length = 1143 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 24/218 (11%) Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228 G+ G+ +A+ +E + A ++A N + A +L E + F P V+ + Sbjct: 22 GLQGAADALLLARYLEQHRAAAPMLAVVCANAVDAQRLAEELRWFAPQARVKLLPDWETL 81 Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 YD + P D E+ +++++ +++ A D ++V + + + + Sbjct: 82 PYDNFSPH-----QDLISERLATLHD----LQNGAC-------DILLVPASTALQRVAPP 125 Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 + K G+ +++ L + Y+ + G + V G I++FP + Sbjct: 126 SFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPLP 184 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 +R+ +FG++IE I F P T + + V +++ + Sbjct: 185 YRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREF 222 >gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis] Length = 413 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V +H ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 288 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 347 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IGR R Sbjct: 348 VSLVINYD-----LPTNRENYIHRIGRGGR 372 >gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum] gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum] Length = 2341 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 +II+ R GK ++V N+L EG+DI EC +V D+ + S SL+Q GR AR+ Sbjct: 678 KIIKKFRDGKCKLIVSTNVLEEGIDIKECNMVICYDS-----VLSLKSLVQRRGR-ARSE 731 Query: 683 NSKVILYADT 692 NS+ I+ T Sbjct: 732 NSQFIVIHHT 741 >gi|282921071|ref|ZP_06328789.1| helicase [Staphylococcus aureus subsp. aureus C427] gi|282315486|gb|EFB45870.1| helicase [Staphylococcus aureus subsp. aureus C427] Length = 953 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|297589433|ref|ZP_06948074.1| helicase [Staphylococcus aureus subsp. aureus MN8] gi|297577944|gb|EFH96657.1| helicase [Staphylococcus aureus subsp. aureus MN8] Length = 953 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb01] gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb01] Length = 408 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|49484698|ref|YP_041922.1| helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|257423968|ref|ZP_05600397.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257426652|ref|ZP_05603054.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429286|ref|ZP_05605673.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257431932|ref|ZP_05608295.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus E1410] gi|257434893|ref|ZP_05610944.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus M876] gi|282902402|ref|ZP_06310295.1| putative helicase [Staphylococcus aureus subsp. aureus C160] gi|282912051|ref|ZP_06319847.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282915347|ref|ZP_06323124.1| putative helicase [Staphylococcus aureus subsp. aureus M899] gi|282925977|ref|ZP_06333625.1| helicase [Staphylococcus aureus subsp. aureus C101] gi|293497742|ref|ZP_06665596.1| helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293511324|ref|ZP_06670020.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus M809] gi|293549930|ref|ZP_06672602.1| putative helicase [Staphylococcus aureus subsp. aureus M1015] gi|295429074|ref|ZP_06821696.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|49242827|emb|CAG41554.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272986|gb|EEV05088.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257276283|gb|EEV07734.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279767|gb|EEV10354.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257282811|gb|EEV12943.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus E1410] gi|257285489|gb|EEV15605.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus M876] gi|282312806|gb|EFB43210.1| helicase [Staphylococcus aureus subsp. aureus C101] gi|282321068|gb|EFB51402.1| putative helicase [Staphylococcus aureus subsp. aureus M899] gi|282323747|gb|EFB54063.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282596861|gb|EFC01820.1| putative helicase [Staphylococcus aureus subsp. aureus C160] gi|290918977|gb|EFD96053.1| putative helicase [Staphylococcus aureus subsp. aureus M1015] gi|291096673|gb|EFE26931.1| helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291465950|gb|EFF08480.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus M809] gi|295126833|gb|EFG56477.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|312437093|gb|ADQ76164.1| helicase [Staphylococcus aureus subsp. aureus TCH60] Length = 953 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|289168885|ref|YP_003447154.1| helicase ComFA [Streptococcus mitis B6] gi|288908452|emb|CBJ23294.1| helicase ComFA [Streptococcus mitis B6] Length = 432 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 + E L E L E+ + T +R+E ++ R GK +L+ +L G+ P C Sbjct: 312 KKGEQLKEILQEQFPHEKIGFVSSITEDRLEQVQAFRDGKLTILISTTILERGVTFP-CV 370 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDE 703 V +++A+ F +K+SLIQ GR R+++ ++ + D + SI+ AI E Sbjct: 371 DVFVVEANHRLF--TKSSLIQIGGRVGRSMDRPTGDLLFFHDGLNASIKKAIKE 422 >gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae] gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae] Length = 403 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFR 316 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+P+ L+ D ++ I IGR+ R Sbjct: 317 SGASRVLITTDVWARGIDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 362 >gi|157737636|ref|YP_001490319.1| primosome assembly protein PriA [Arcobacter butzleri RM4018] gi|157699490|gb|ABV67650.1| primosomal protein N' [Arcobacter butzleri RM4018] Length = 615 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVL 636 + + G+ L V T ++ E+L ++NI+ R+ E+KT +++ I+ D GK D+L Sbjct: 379 SCKTGIIHNLRVGTAQIEEELKAIFPQKNIK-RFDRDEIKTENQLKTILNDFNSGKIDIL 437 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVIL 688 VG +L +G D L +L D + S + LIQ GR+ R+ +VI+ Sbjct: 438 VGTQMLSKGHDYHNVKLAVVLGIDSVLNMNSYKAREKALSLLIQISGRSGRSGFGEVII 496 >gi|223932579|ref|ZP_03624579.1| type III restriction protein res subunit [Streptococcus suis 89/1591] gi|223898689|gb|EEF65050.1| type III restriction protein res subunit [Streptococcus suis 89/1591] Length = 957 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A++L R +R R + E ER +++DL G D ++ +++ EG+DIP V Sbjct: 462 AKELEGQFNARGLRTRALSGEHSQKERQRVVQDLENGNLDYILTVDIFNEGIDIPSVNQV 521 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 +L +S IQ +GR R +SK Sbjct: 522 VMLRN-----TQSSIIFIQQLGRGLRKHDSK 547 >gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis elegans] gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 660 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR A +L +L + IR +H ++K +ER + R G+ +LV + Sbjct: 401 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 460 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP + +++ D G + IGR R N Sbjct: 461 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 494 >gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans] gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Initiation factor 1 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans] gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 402 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+Y+ +N+ + ++ T+R + LTE + E V +H ++ ER I+R+ R Sbjct: 261 DLYNVVNVT-----QAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++L G+D+ + LV D +++E + I IGR+ R Sbjct: 316 SGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361 >gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL Brener] gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi] Length = 395 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + +A ++ T++ E L + + + V MH ++ ER EI+R+ R Sbjct: 254 DLYDTLTIA-----HAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GK VL+ +L G+D+ + LV D S+ I IGR R Sbjct: 309 EGKSRVLISTDLWSRGIDVEQVSLVLNYD-----LPFSREQYIHRIGRTGR 354 >gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior] Length = 704 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L EYL V +H + ER E +R R GK +LV + G Sbjct: 480 LVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREEALRRFRAGKAPILVATAVAARG 539 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D D E ++ +T + +G A N K Sbjct: 540 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNHK 583 >gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892] gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892] Length = 399 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|71030480|ref|XP_764882.1| RNA helicase-1 [Theileria parva strain Muguga] gi|68351838|gb|EAN32599.1| RNA helicase-1, putative [Theileria parva] Length = 598 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K E + EYL + + +H + ERIE I D + K DVL+G ++ + Sbjct: 456 VLIFCENKADVEIINEYLILKGVEASAIHGGLSQEERIESISDFKNHKKDVLIGTDIASK 515 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD P V D R + + IGR R Sbjct: 516 GLDFPSIQHVINFD-----LPRDMENYVHRIGRTGR 546 >gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1] gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1 Length = 675 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L +N +H + ER + R G+ +LV + G Sbjct: 449 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARG 508 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 509 LDIPHVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 544 >gi|71898961|ref|ZP_00681127.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] gi|71731207|gb|EAO33272.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] Length = 718 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ +R + + DVLV ++ G+D+P L+ I +A++ G Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R V+S V+LY Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623 >gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora] Length = 648 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L +N +H + ER + R G+ +L Sbjct: 473 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPIL 532 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 533 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 577 >gi|227494754|ref|ZP_03925070.1| possible transcription-repair coupling factor [Actinomyces coleocanis DSM 15436] gi|226831754|gb|EEH64137.1| possible transcription-repair coupling factor [Actinomyces coleocanis DSM 15436] Length = 1199 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%) Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339 I G+ +E S L++G V+ L + LV Y R D+ RG V G I++F Sbjct: 138 IIGGLADIEPIS-----LRLGSVVDLPSLTAQLVDYGYARVDVVSARGEIAVRGGIIDVF 192 Query: 340 PSHLEDVAWRVSMFGNDIEEISEF 363 P E RV +FGN++++I F Sbjct: 193 PP-TESHPVRVELFGNEVDDIRYF 215 >gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura] gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura] Length = 939 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 N +A G +I++ V TK ED+ + + +H + ER +++D R GK ++ Sbjct: 486 NNSANNGNKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNI 545 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ ++ GLD+ + V D + S + + IGR R Sbjct: 546 LIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 585 >gi|188990343|ref|YP_001902353.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. campestris str. B100] gi|167732103|emb|CAP50295.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris] Length = 713 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 537 GVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAERLGL- 595 Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTIT 694 L Q GR R +S V+LY ++ Sbjct: 596 ---AQLHQLRGRVGRGAAASSCVLLYQGPLS 623 >gi|157106196|ref|XP_001649212.1| hypothetical protein AaeL_AAEL004472 [Aedes aegypti] gi|108879906|gb|EAT44131.1| hypothetical protein AaeL_AAEL004472 [Aedes aegypti] Length = 244 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 559 VEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 V+ R+ + D+ I N ++ L+ V TK+ A+ L E+LY N V +H + Sbjct: 15 VDENDKRSHLLDLLSNIKAQNEGDEKDCLTLIFVETKKSADSLEEFLYHYNHPVTSIHGD 74 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSL 671 ER + ++ R G+ VLV + GLDIP V D A+ E ++ +T Sbjct: 75 RTQKEREDALKCFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEIEEYVHRIGRTGR 134 Query: 672 IQTIGRAARNVNSKVILYADTITKSIQ 698 + +G A N K A+ + + +Q Sbjct: 135 MGNLGIATSFFNDKNRNVANGLVRLLQ 161 >gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650 [Aureococcus anophagefferens] Length = 482 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 23/183 (12%) Query: 522 RPTTIVVSATPGSW------------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569 RP T++ SAT SW EL G +Q T + V + Sbjct: 289 RPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAA--TTVTHKAVLVPRGPDARA 346 Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 + ++I AAQ G R+++ TK+ ++L + + + +H ++ +R + R Sbjct: 347 SLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRETTLAQFR 406 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFL-RSKTSLIQTIGRAARNVNSKV 686 G F VLV ++ G+D+ LV D EG++ RS + GRA R+ + V Sbjct: 407 RGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRT-----GRAGRD-GTAV 460 Query: 687 ILY 689 +LY Sbjct: 461 VLY 463 >gi|302890734|ref|XP_003044250.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI 77-13-4] gi|256725172|gb|EEU38537.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI 77-13-4] Length = 1302 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ ++++ AE + E L ++ I R+ H+ V E++E+ + G+ V+V G Sbjct: 936 IVYTISRKNAEKVAESLTKQGIMARHYHAHVDPREKVEVQDGWQRGQVKVVVATVAFGMG 995 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689 +D P+ V G +S Q GRA R+ N S IL+ Sbjct: 996 IDKPDVRFVM-----HHGLPKSLEGYYQETGRAGRDGNPSDCILF 1035 >gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+] gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+] Length = 488 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 346 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 400 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 401 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 446 >gi|148543598|ref|YP_001270968.1| helicase domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184153006|ref|YP_001841347.1| competence protein [Lactobacillus reuteri JCM 1112] gi|227363440|ref|ZP_03847564.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri MM2-3] gi|325681951|ref|ZP_08161469.1| competence protein FA [Lactobacillus reuteri MM4-1A] gi|148530632|gb|ABQ82631.1| helicase domain protein [Lactobacillus reuteri DSM 20016] gi|183224350|dbj|BAG24867.1| competence protein [Lactobacillus reuteri JCM 1112] gi|227071540|gb|EEI09839.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri MM2-3] gi|324978595|gb|EGC15544.1| competence protein FA [Lactobacillus reuteri MM4-1A] Length = 443 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 18/195 (9%) Query: 525 TIVVSATPGSWELEQCQG--IIVEQI-IRPTGLVDPPVEIRSA---RTQVE------DVY 572 + ++ATPG L + + ++V + +R G + P +++R A R ++E V Sbjct: 235 CLYLTATPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKVRLAFGWRRRLERQQLPPQVI 294 Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 ++ ++G R LL + + L R+ ER+E ++ +R G Sbjct: 295 QQLQETLREGHRFLLFIPHIADLALVEAALRHSFATFRFATVHASDPERLEKVQKMRDGD 354 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILY 689 +D LV ++L G+ PE V +L AD F S ++L+Q GRA R +V+ + Sbjct: 355 YDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALVQIAGRAGRAQSRPTGRVVFW 411 Query: 690 ADTITKSIQLAIDET 704 + + + AI + Sbjct: 412 INCNCRQVNQAISQV 426 >gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 400 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER EI+++ R Sbjct: 259 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 314 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 359 >gi|50305859|ref|XP_452890.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660559|sp|Q6CT49|PRP28_KLULA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 gi|49642023|emb|CAH01741.1| KLLA0C15433p [Kluyveromyces lactis] Length = 539 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ + KR A+ L + L E R +H +R + LR GK D+L+ ++ Sbjct: 391 IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+DIP LV L F +S S + +GR R Sbjct: 451 GIDIPNVSLVVNLQ-----FPKSFDSFVHRVGRTGR 481 >gi|53803678|ref|YP_114457.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str. Bath] gi|53757439|gb|AAU91730.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str. Bath] Length = 691 Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+R +H + E+ ++R+ + G+ D+LV ++ G+D+P GL+ I + ++ G Sbjct: 515 GLRIRLLHGRMSAAEKDGVMREFKAGESDILVATTVIEVGVDVPNAGLMIIENPERLGL- 573 Query: 666 RSKTSLIQTIGRAARNVNSK--VILY 689 L Q GR R ++LY Sbjct: 574 ---AQLHQLRGRVGRGPGDAYCILLY 596 >gi|294626007|ref|ZP_06704617.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599677|gb|EFF43804.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1464 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 252 PLSVVMSNDQWLQVYADVAAFAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GR+ V K L+ T + ++ A+ ++ RR E Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403 >gi|289665648|ref|ZP_06487229.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1454 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 242 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVAAHHGS 301 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G VLV L GLDI + LV L G RS + +Q Sbjct: 302 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 356 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GR+ V K L+ T + ++ A+ ++ RR E Sbjct: 357 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 393 >gi|261378249|ref|ZP_05982822.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685] gi|269145330|gb|EEZ71748.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685] Length = 680 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ G+ +VLV ++ G+D+P L+ Sbjct: 496 EQLQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 553 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591 >gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis] gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis] Length = 799 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ + V +H + ER E +R R G +LV + G Sbjct: 558 LIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617 Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D +D E + + IGR R N V Sbjct: 618 LDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGNLGV 653 >gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1] gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1] Length = 994 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L+ GD+V+ EL +L + Y DI RG GD I+IFP E +R+S+F ++ Sbjct: 104 LEFGDTVDLNELKDTLYQWGYHFTDIAASRGEVSFRGDIIDIFPIDAEK-PYRISLFDDE 162 Query: 357 IEEISEF 363 IE I + Sbjct: 163 IESIQHY 169 >gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10] gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10] Length = 683 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L +N +H + ER + R G+ +LV + G Sbjct: 449 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARG 508 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 509 LDIPNVKHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 544 >gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio] Length = 715 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A R ++ V TKR A+ + +L + I +H + + ER + + D RLG+ VL Sbjct: 523 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVL 582 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 V ++ GLDI + V D S + IGR R N+ Sbjct: 583 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 625 >gi|28199580|ref|NP_779894.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1] gi|182682315|ref|YP_001830475.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23] gi|28057695|gb|AAO29543.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1] gi|182632425|gb|ACB93201.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23] gi|307578592|gb|ADN62561.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa subsp. fastidiosa GB514] Length = 718 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ +R + + DVLV ++ G+D+P L+ I +A++ G Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R V+S V+LY Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623 >gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus] Length = 687 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L +L + + +H + + ER + D + GK +L+ ++ Sbjct: 487 RTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGKCPILIATSVAA 546 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691 GLDIP+ V D E + IGR R N+ S Y+D Sbjct: 547 RGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGNLGSATSFYSD 591 >gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe] Length = 636 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ LT+YL N +H + ER + R G+ ++V + G Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 LDIP V D + + IGR R N+ Sbjct: 494 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNT 527 >gi|319950872|ref|ZP_08024752.1| type III restriction enzyme, res subunit [Dietzia cinnamea P4] gi|319435464|gb|EFV90704.1| type III restriction enzyme, res subunit [Dietzia cinnamea P4] Length = 486 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 + +R L +T +E + ++ +R I + ++ +R I DLR G+ + + ++ Sbjct: 134 RAMRALGFCVTIEHSEYMAKWFTDRGIPAISISAKTAREDRERGISDLRAGRINCIFTVD 193 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + EG+DIPE +V +L + S T IQ +GR R +K +L Sbjct: 194 VFNEGVDIPEVDVVLMLRPTQ-----SSTVYIQQLGRGLRRSPAKSVL 236 >gi|256273404|gb|EEU08340.1| Dbp5p [Saccharomyces cerevisiae JAY291] Length = 449 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 301 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 360 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 361 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 396 >gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480] gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371] gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480] gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371] gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS 112818] gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS 127.97] Length = 399 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|229824032|ref|ZP_04450101.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271] gi|229786386|gb|EEP22500.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271] Length = 447 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 VYD + + L+ TK+ A +LT+ L ER ++V +H ++ ER ++R ++ Sbjct: 236 VYDLLTMG--HPFLALVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKD 293 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ +V +L G+DIP +V + KE + +GR RN Sbjct: 294 LEYQYVVASDLAARGIDIPGISMVINTELPKE-----LEFFVHRVGRTGRN 339 >gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio] gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer Length = 1865 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%) Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 EV+ ++ E++R R + ++L+ +++ EG+DIP+C LV D E S +Q+ Sbjct: 481 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 535 Query: 675 IGRAARNVNSKVILYADTITKSIQ 698 GRA V++ ++L TK+ Q Sbjct: 536 KGRARAPVSNYIMLADSERTKTFQ 559 >gi|256851320|ref|ZP_05556709.1| primosomal protein N [Lactobacillus jensenii 27-2-CHN] gi|260660744|ref|ZP_05861659.1| primosomal protein N [Lactobacillus jensenii 115-3-CHN] gi|282933235|ref|ZP_06338622.1| primosomal protein N' [Lactobacillus jensenii 208-1] gi|297206190|ref|ZP_06923585.1| DNA replication factor Y [Lactobacillus jensenii JV-V16] gi|256616382|gb|EEU21570.1| primosomal protein N [Lactobacillus jensenii 27-2-CHN] gi|260548466|gb|EEX24441.1| primosomal protein N [Lactobacillus jensenii 115-3-CHN] gi|281302739|gb|EFA94954.1| primosomal protein N' [Lactobacillus jensenii 208-1] gi|297149316|gb|EFH29614.1| DNA replication factor Y [Lactobacillus jensenii JV-V16] Length = 797 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 15/114 (13%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641 L T+++ E+L+E L VR + +V T R EI+ G+ D+L+G + Sbjct: 553 FLGTGTQKVEEELSELL----PGVRILRMDVDTTRRKGSYKEILDKFGAGEADILLGTQM 608 Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688 + +GLD P LV +++AD +L ++ L Q GRA R S +L Sbjct: 609 IAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGRAEKSGQVL 662 >gi|261363938|ref|ZP_05976821.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996] gi|288567957|gb|EFC89517.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996] Length = 680 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ G+ +VLV ++ G+D+P L+ Sbjct: 496 EQLQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 553 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591 >gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 387 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 245 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 299 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 300 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 345 >gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM 30120] gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM 30120] Length = 1148 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 55/302 (18%), Positives = 123/302 (40%), Gaps = 35/302 (11%) Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 V+ L + G+ A++IE Q P +++ + A +++ E + F +Y + Sbjct: 16 VRHLGCLIGAAGPLECAEMIERHQGPVVIVTRDMQNALRVHDELQQF-----TQYPIETL 70 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 ++ Y D + + I+ ++ + T + +++ + + + V+ Sbjct: 71 SDWETLPY----DNFSPHQEIISHRLSTLYRLPTL----QKGALILPVNTLMQKVCPVDF 122 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 + + + GD + + L L K Y+ + + G + + G +++FP D +R Sbjct: 123 LAGHALVMAKGDKLSRDNLREELDKAGYRHVEQVLEHGEYAIRGALLDLFPMG-SDFPFR 181 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409 + F ++I+ + F T + + V I + + PT A++ + + + R Sbjct: 182 IDFFDDEIDSLRTFDVDTQRTLEEVNAINLLPAHEF----PTDKDAIERFRSQWRERF-- 235 Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469 E +R D E + S Q++ + Y EP P+LFEY+P ++ Sbjct: 236 --------EVRR-------DPEHIYQQVSKQTLPSGIEYWQPLFFAEPLPSLFEYLPANT 280 Query: 470 LL 471 L Sbjct: 281 LF 282 >gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163] Length = 429 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 266 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 320 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 321 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 366 >gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1142 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 10/116 (8%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 +M E+L + + + I VR H ++ T E +I+ D +F +LV ++ G+DIP Sbjct: 823 KMVENLKQIMPK--IHVRIAHGQMPTRELKKIMSDFYHARFQILVCTTIIETGIDIPNAN 880 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 + I +A G L Q GR R+ + YA I KS QL + +T ++R Sbjct: 881 TIIINNAQNFGL----AQLHQLRGRVGRSHHRA---YAYLIIKSYQL-LSKTAKKR 928 >gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2] Length = 489 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A+ R ++ TKR A+ L L +R +V+ +H ++ +R + ++ R G+ DVL Sbjct: 264 LQAEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREGQVDVL 323 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 V ++ G+DI + V + + + + IGR R N+ + + Sbjct: 324 VATDVAARGIDIDDVTHVVNYQCPDD-----EKTYVHRIGRTGRAGNTGIAV 370 >gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9313] gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. MIT 9313] Length = 1193 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 38/305 (12%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF-FPHNAVEYFVSYYD 230 L+ G G+ + + RP +V+ P A + S + HN + Y S Sbjct: 30 LMRGAGRVGRALIASAIARKQNRPLVVIVPTLEEANRWSSLLAMMGWSHNHL-YPTSEGS 88 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 Y+P + P T+ + ++E + S R+ IV + + + V++ Sbjct: 89 PYEP--FDPTTEIVWGQLQVLSELLGESSRSWDRA-------IVATERALQPHLPPVDAL 139 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 + L G+ ++ + L ++L K Y R T+ GD ++IFP E + R+ Sbjct: 140 ASQCEILCRGEHIDLESLANTLSKLGYDRVTTVDQEATWSRRGDIVDIFPVSSE-LPVRL 198 Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410 +FG++++++ EF P++ + + V N +TP ++E + L Sbjct: 199 ELFGDELDKLKEFDPISQRSLDEV-------NELCLTPSGFSPLIAHQLRESMPDGL--- 248 Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470 RL+ + L+Q +LE S + R L G + P +L +YIP +S Sbjct: 249 ---DRLVSEKTLDQ-------LLEG-----STPDGIRRLMGIAWNK-PASLLDYIPANSF 292 Query: 471 LFVDE 475 + +DE Sbjct: 293 IAIDE 297 >gi|332685789|ref|YP_004455563.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC 35311] gi|332369798|dbj|BAK20754.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC 35311] Length = 679 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 8/106 (7%) Query: 590 LTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 L + A ++ EYL + +V +H ++K ++ EI+++ + + +LV ++ G+ Sbjct: 480 LDAKNALEIYEYLSNFFNDEYKVGLLHGKMKNTQKEEIMQEFKNNQLQILVSTTVIEVGV 539 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691 ++P L+ I+DAD+ G L Q GR R + IL AD Sbjct: 540 NVPNATLMLIIDADRFGL----AQLHQLRGRVGRGTEAAYCILIAD 581 >gi|159036815|ref|YP_001536068.1| ATP-dependent DNA helicase RecG [Salinispora arenicola CNS-205] gi|157915650|gb|ABV97077.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 733 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ +H + E+ ++R G DVLV ++ G+D+P ++ +LDAD+ G Sbjct: 549 GLRIGVLHGRLAADEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMIVLDADRFGV- 607 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + L Q GR R + L T+ Sbjct: 608 ---SQLHQLRGRVGRGAAPGLCLLVTEATEG 635 >gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916] gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916] Length = 1194 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 L+ GDS++ +EL +L + Y+R GT+ GD ++IFP E + R+ FG++ Sbjct: 159 LRKGDSLDLEELAINLSQLGYERVSTIDQEGTWSRRGDIVDIFPVSSE-LPVRLEFFGDE 217 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 ++++ EF P + + + VE +++ P + ++ E +L+ E+ G L Sbjct: 218 LDKLREFDPASQRSLDPVEHLRLTPTGF----SPLIAEQLRDSMPEGLDQLLSEEQLGAL 273 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 L+ Q E R L G E P +L +Y+P + +DE Sbjct: 274 LDGQTPEG---------------------MRRLMGLA-WEQPASLLDYLPNHCSVVIDE 310 >gi|86739390|ref|YP_479790.1| ATP-dependent DNA helicase RecQ [Frankia sp. CcI3] gi|86566252|gb|ABD10061.1| ATP-dependent DNA helicase, RecQ-like [Frankia sp. CcI3] Length = 754 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 LTK AE+LT +L + V H ++ ERI DL + L+ + L G D P Sbjct: 273 LTKAAAEELTIFLRGQGHAVATYHGGIEAAERIVAEEDLLANRVKALIATSALGMGFDKP 332 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688 + G V + A S S Q IGRA R ++ ++V+L Sbjct: 333 DLGFVVHIGAPS-----SPISYYQQIGRAGRALDTAEVVL 367 >gi|33597517|ref|NP_885160.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822] gi|33573945|emb|CAE38263.1| ATP-dependent DNA helicase [Bordetella parapertussis] Length = 663 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ +H + E+ E++R R G+ D+LV ++ G+D+P L+ I A++ G Sbjct: 487 DLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 545 Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695 L Q GR R V+LY +++ Sbjct: 546 ---AQLHQLRGRVGRGTAESICVLLYQAPLSQ 574 >gi|33592698|ref|NP_880342.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|33572344|emb|CAE41901.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|332382113|gb|AEE66960.1| ATP-dependent DNA helicase RecG [Bordetella pertussis CS] Length = 656 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ +H + E+ E++R R G+ D+LV ++ G+D+P L+ I A++ G Sbjct: 480 DLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 538 Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695 L Q GR R V+LY +++ Sbjct: 539 ---AQLHQLRGRVGRGTAESICVLLYQAPLSQ 567 >gi|33601915|ref|NP_889475.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] gi|33576352|emb|CAE33431.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] Length = 663 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ +H + E+ E++R R G+ D+LV ++ G+D+P L+ I A++ G Sbjct: 487 DLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 545 Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695 L Q GR R V+LY +++ Sbjct: 546 ---AQLHQLRGRVGRGTAESICVLLYQAPLSQ 574 >gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892] gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892] Length = 678 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L ++ +H + ER + R G+ +LV + G Sbjct: 464 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 523 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 524 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 559 >gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis BCM-HMP0060] gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis BCM-HMP0060] Length = 1166 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 21/184 (11%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415 ++ I +F T + N+ ++I S Y+ + K+ + ++EK R Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNEFKKAYEYTRPKIEKSVRN 255 Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 E+ +L + +D ++L S E P TL +Y +++++ Sbjct: 256 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 301 Query: 472 FVDE 475 VDE Sbjct: 302 VVDE 305 >gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus nidulans FGSC A4] Length = 668 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L + +H + ER + R G++ +LV + G Sbjct: 450 LIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARG 509 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 510 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 545 >gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana] Length = 2042 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ D R G +++V ++L EGLD+ C LV D + S IQ+ GR AR Sbjct: 1093 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 1146 Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715 NS ++ D +T+S + + R RE+ L+H+ Sbjct: 1147 NSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS 1183 >gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-] gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName: Full=Multicopy suppressor of overexpressed cyr1 protein 2 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe] gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe] gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe] gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe] Length = 636 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ LT+YL N +H + ER + R G+ ++V + G Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 LDIP V D + + IGR R N+ Sbjct: 494 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNT 527 >gi|223938508|ref|ZP_03630400.1| primosomal protein N' [bacterium Ellin514] gi|223892770|gb|EEF59239.1| primosomal protein N' [bacterium Ellin514] Length = 773 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676 I+ D RLGK D+LVG ++ +GL P LV I+ AD L R+ L Q G Sbjct: 567 ILGDFRLGKIDILVGTQMIAKGLHFPNVTLVGIVYADMALHLADFRAGERTFQLLTQVAG 626 Query: 677 RAARN 681 RA R Sbjct: 627 RAGRG 631 >gi|291296115|ref|YP_003507513.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber DSM 1279] gi|290471074|gb|ADD28493.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279] Length = 768 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AA+QGLR L+ +R AE + Y + RVR + +R ++ + L+ G VLV Sbjct: 284 AAEQGLRTLIFTNARRTAELVAR--YAADDRVRPYRAGYTAADRRKLEQALQEGTVRVLV 341 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 + L G+DI +V +L G+ S +S Q GRA R ++L+ Sbjct: 342 STSALELGVDIGGLEVVVLL-----GYPGSVSSFWQRAGRAGRGQQRALVLW 388 >gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus] gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus] Length = 935 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V TK+ EDL + + +H + ER +++D R GK +LV ++ Sbjct: 504 KIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 563 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + V D + S I IGR R Sbjct: 564 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 595 >gi|158520449|ref|YP_001528319.1| type III restriction protein res subunit [Desulfococcus oleovorans Hxd3] gi|158509275|gb|ABW66242.1| type III restriction protein res subunit [Desulfococcus oleovorans Hxd3] Length = 619 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%) Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 ER + R +HS + + E+++DLR + D +V + +L EG D P + AI Sbjct: 307 ERGLNAREIHSNMPADQIEEVLQDLRRSRIDCIVQVRMLGEGFDHPNLSVAAIFQP---- 362 Query: 664 FLRSKTSLIQTIGRAARNVN 683 RS + +Q IGR R ++ Sbjct: 363 -FRSLSPYVQFIGRVMRVIH 381 >gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] Length = 542 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K + + L ++I MHS++ R E++ + G+FDVLV +++ Sbjct: 247 RVIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQFDVLVATDIVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 G+DI + +V D D E ++ +T+ G A V+ I Y I K + Sbjct: 307 RGIDIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSDDDIYYFQLIEKFLGK 366 Query: 700 AIDET 704 +D+T Sbjct: 367 QVDKT 371 >gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1164 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLTGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 853 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 909 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 910 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 945 >gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata] Length = 650 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R G+ VLV ++ Sbjct: 469 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGRCPVLVATSVAA 528 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 529 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 564 >gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas endodontalis ATCC 35406] gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas endodontalis ATCC 35406] Length = 451 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 18/132 (13%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 +K L L R + V MHS++ R +++RD + G +VLV +++ G+DI + Sbjct: 256 SKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTGYVEVLVATDIVARGIDIDD 315 Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 +V D D E + + IGR AR + + + +I L ++E +R Sbjct: 316 IKVVINYDMPHDPEDY-------VHRIGRTARGTDGRGV--------AITL-VNEEEQRS 359 Query: 709 EKQLEHNKKHNI 720 LEH ++I Sbjct: 360 FAALEHFLGYSI 371 >gi|65736550|dbj|BAD98517.1| hypotheical protein [Nasutitermes takasagoensis] Length = 142 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE ++ R+ V MH +++ ER I+R R Sbjct: 1 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHNRDFTVSAMHGDMEQRERDLIMRQFR 55 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 56 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 93 >gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii ME49] gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii] gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii ME49] gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1] gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma gondii VEG] Length = 412 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT + ER+ V MH ++ R I+R+ R G VL+ +LL G+D+ + Sbjct: 287 TRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARGIDVQQ 346 Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 LV D A KE + I IGR+ R Sbjct: 347 VSLVINYDLPATKENY-------IHRIGRSGR 371 >gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517] gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517] Length = 677 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L ++ +H + ER + R G+ +LV + G Sbjct: 463 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 522 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 523 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 558 >gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371] gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371] Length = 677 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L ++ +H + ER + R G+ +LV + G Sbjct: 463 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 522 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 523 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 558 >gi|297565888|ref|YP_003684860.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946] gi|296850337|gb|ADH63352.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946] Length = 903 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 7/104 (6%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R+A++L E L ++R+ +H +++ E+ ++ R FD+LV ++ G+DIP+ Sbjct: 710 RLAQELQELLP--DVRIDLLHGKMRAEEKDAVMERFRYRHFDLLVSTTVIEVGVDIPQAT 767 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695 ++ I +A++ G L Q GR R + + IL A +K Sbjct: 768 VMVIENAERFGL----AQLHQLRGRVGRGGLEAYCILIAGETSK 807 >gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis SLH14081] gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR] gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis SLH14081] gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3] gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143] gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88] gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC 18188] Length = 399 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|145612307|ref|XP_367108.2| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15] gi|145019494|gb|EDK03722.1| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15] Length = 645 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+ G L+ V TKR A++L+++L +N+ +H + ER + R G+ +L Sbjct: 418 LSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPIL 477 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 478 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 522 >gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length = 586 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK+ EDL E L R ++ ++ +R I L+ G D+LV ++ Sbjct: 253 MIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 312 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + +L+ + + AI+ Sbjct: 313 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGR--AGEALLFVAPRERHLLKAIE 366 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 + TR+ +++ ++N Q V + Sbjct: 367 KATRQPLAEMQLPSVDDVNAQRVSK 391 >gi|109946646|ref|YP_663874.1| ATP-dependent DNA helicase RecG [Helicobacter acinonychis str. Sheeba] gi|109713867|emb|CAJ98875.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 621 Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P+ S +N+ F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIICPNNSERLNH-------FIASLPFKLTNDQQNAIKEIQNDLTSPIACKRLIVGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura] gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura] Length = 800 Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY+ + V +H + ER E +R R G +LV + G Sbjct: 559 LIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 618 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 619 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 662 >gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana] gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1388 Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ D R G +++V ++L EGLD+ C LV D + S IQ+ GR AR Sbjct: 439 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 492 Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715 NS ++ D +T+S + + R RE+ L+H+ Sbjct: 493 NSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS 529 >gi|84622705|ref|YP_450077.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366645|dbj|BAE67803.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 717 Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAAR--NVNSKVILY 689 L Q GR R + +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGADASSCVLLY 622 >gi|308159948|gb|EFO62462.1| ATP-dependent RNA helicase [Giardia lamblia P15] Length = 901 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V TK E LT L N+R ++ + +R + D G++ +L+ ++ Sbjct: 300 RLLVFVATKHHCEYLTSVLQANNLRATCIYGSLDQKQRTLALSDFDKGRYSILISTDVAA 359 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+DIP V + F S + + +GR+AR Sbjct: 360 RGIDIPNLNCVINYN-----FPSSGKNYVHRVGRSAR 391 >gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500] Length = 3481 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE-RIEIIRDLRLGKFDVLVGINLLREGL 646 +VL + +L+ + + YM LE + EI+ + + +LV ++L EG+ Sbjct: 640 SVLRALKKKHFNSFLHAKKLIGHYMADGGMDLEEQQEILAKFKDNECRLLVATSVLEEGI 699 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 DIP C L+ D D + LR SLIQ GR AR+ NSK ++ Sbjct: 700 DIPACNLIICFDDDLQ--LR---SLIQRRGR-ARSANSKFYVF 736 >gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480] gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480] Length = 680 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L ++ +H + ER + R G+ +LV + G Sbjct: 462 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 521 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 522 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 557 >gi|218514909|ref|ZP_03511749.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3] Length = 431 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%) Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201 + P+ Q AIA +LK + E+ ++LL G GSGKT +MA VIE+ + A++MAP Sbjct: 288 FSPTSSQNEAIADILKDMAGTERMLRLLQGDVGSGKTLVALMSMAAVIESGGQ-AVLMAP 346 Query: 202 NKILAAQLYSEFKNF 216 +ILA Q ++ F Sbjct: 347 TEILARQHHATISKF 361 >gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides posadasii C735 delta SOWgp] gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str. Silveira] Length = 399 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38] gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38] Length = 1087 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 54/252 (21%), Positives = 104/252 (41%), Gaps = 24/252 (9%) Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 + G+ GS +F + + + P +++ NK AA ++ + V ++ S Y Sbjct: 1 MTGLVGSSLSFVAHSLFKKSELPFLILFSNKEEAAYYLNDLEQLINAEDVLFYPSSY--- 57 Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286 R IE+ + N E ++R+ + I+VS I+ + + Sbjct: 58 -------RRPYQIEETDNANVLLRAEVLNRINS-------RKKPAIIVSYAEAIFEKVVT 103 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 + + ++L + D + + +L + +KR D G F V G I++F S D Sbjct: 104 RKELEKNTLKLSVEDKLSIDFINETLFEYNFKRVDFVTEPGEFSVRGGIIDVF-SFSNDN 162 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 +R+ FGN+I+ I F T I ++ I I N + + + YI E+ + Sbjct: 163 PYRIEFFGNEIDSIRSFDVETQLSIEKLKKISIIPNVENKLLQENRESFLDYINEKTVLL 222 Query: 407 LIELEKEGRLLE 418 + E G+ L+ Sbjct: 223 IQNTELLGQQLD 234 Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYERNI---RVRYM 612 P+E R E + D I+ Q+G ++ + R+ E++ E + +R + +V Sbjct: 714 PIETHVIRFNEEAIRDAISYEIQRGGQVFF--INNRI-ENIKEVAGMIQRLVPGAKVGIG 770 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H +++ + E++ G+FDVLV ++ GLD+P + I +A+ G + L Sbjct: 771 HGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGL----SDLH 826 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 Q GR R+ N K Y IT + E +R Sbjct: 827 QMRGRVGRS-NKKAFCYF--ITPPYSMMTGEAQKR 858 >gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|15836956|ref|NP_297644.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa 9a5c] gi|9105182|gb|AAF83164.1|AE003887_7 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c] Length = 718 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ +R + + DVLV ++ G+D+P L+ I +A++ G Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERFGL- 600 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R V+S V+LY Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623 >gi|255066129|ref|ZP_05317984.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256] gi|255049674|gb|EET45138.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256] Length = 704 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ G+ +VLV ++ G+D+P L+ Sbjct: 520 EQLQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 577 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTITK 695 I A++ G L Q GR R V +L+A+ +++ Sbjct: 578 IEHAERMGL----AQLHQLRGRVGRGAAESVCILLFAEPLSE 615 >gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 399 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82] gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82] Length = 662 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L N+ +H + ER ++ R G+ ++V + G Sbjct: 443 LVFVETKRMADMLSDFLMGNNLPATSIHGDRTQREREMALQTFRTGRTPIMVATAVAARG 502 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ V Sbjct: 503 LDIPNVTHVVNYDLPSD-----IDDYVHRIGRTGRAGNTGV 538 >gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo sapiens] Length = 936 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 499 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 558 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 559 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 610 >gi|332296364|ref|YP_004438287.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] gi|332179467|gb|AEE15156.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] Length = 667 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 14/171 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V +H + E+ +I++D + GK +LV ++ G+DIP+ ++ I + ++ G Sbjct: 490 VGLIHGRLSQSEQDKIMQDFKTGKIKILVSTTVIEVGIDIPQANIMVIENPERFGL---- 545 Query: 669 TSLIQTIGRAAR-NVNSKVILYADTITKS---IQL--AIDETTRRREKQLEHNKKHNI-- 720 L Q GR R N++S L AD + S +Q+ ++ E+ LE + I Sbjct: 546 AQLHQLRGRIGRGNLSSTCYLLADEESYSSRRVQIFEKVNNGFELAERDLELRGQGEIIG 605 Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771 + QS ++ ++V +P L+D I+ +L +SK + K L+ +M Sbjct: 606 SKQSGLDQTLKVANP--LKDTDIMRIAQKVAELIISKDPDLTYFKELKLKM 654 >gi|330984017|gb|EGH82120.1| RecG-like helicase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 777 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV +H K E++EII + G DVL+ L+ G+DI + +A++DAD G Sbjct: 604 RVAVIHGRSKRDEKVEIIDLMNRGDADVLLATTLIEIGIDIADLRALAVIDADYLG---- 659 Query: 668 KTSLIQTIGRAARN 681 +L Q GR ARN Sbjct: 660 AYTLHQLRGRVARN 673 >gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97] Length = 680 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L ++ +H + ER + R G+ +LV + G Sbjct: 466 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 525 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 526 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 561 >gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099] gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099] Length = 829 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 16/145 (11%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLR 629 L + G R+++ ++ AE LT +L + R++ + ++ E++ + R Sbjct: 367 LGLEGGERVIVFTESRDTAEALTAFLSDSFDAKRFVGQGDREGSDGMTQKQQQEVLDEFR 426 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688 +F+VLV ++ EGLD+PE LV + + + IQ GR R + V+L Sbjct: 427 AAEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQSEGRVVVL 481 Query: 689 YADTITKSIQLAIDETTRRREKQLE 713 A+ I +RRREK++E Sbjct: 482 MAEDTRDEAYFWI---SRRREKEME 503 >gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980] gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980 UF-70] Length = 678 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L +N +H + ER + R G+ +LV + G Sbjct: 449 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARG 508 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 509 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 544 >gi|149237124|ref|XP_001524439.1| hypothetical protein LELG_04411 [Lodderomyces elongisporus NRRL YB-4239] gi|146451974|gb|EDK46230.1| hypothetical protein LELG_04411 [Lodderomyces elongisporus NRRL YB-4239] Length = 433 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EIIR + G ++VLV ++ EGLDI E L+ D+ S IQ +GR R Sbjct: 70 EIIRQFKNGDYNVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 124 Query: 683 NSKVIL 688 + KV+L Sbjct: 125 DGKVVL 130 >gi|90407853|ref|ZP_01216029.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3] gi|90311028|gb|EAS39137.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3] Length = 690 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 VL + AED+ L ++R+ +H + LE+ ++ + G+ D+LV ++ G+ Sbjct: 495 VLQCQAAEDIANNLQLSLVDLRIGLVHGRMSALEKQYVMDAFKSGELDLLVATTVIEVGV 554 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTIT 694 D+P L+ I +A++ G L Q GR R + V+LY D ++ Sbjct: 555 DVPNASLMIIENAERLGL----AQLHQLRGRVGRGTVASHCVLLYKDPLS 600 >gi|120403147|ref|YP_952976.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1] gi|119955965|gb|ABM12970.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1] Length = 752 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ MH + E+ ++ R G+ DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 571 DLRLGLMHGRLSGDEKAAVMSAFRRGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 629 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + L Q GR R + + L + +S Sbjct: 630 ---SQLHQLRGRIGRGEHPSLCLLVTKLPES 657 >gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124] gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124] Length = 1195 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 69/349 (19%), Positives = 142/349 (40%), Gaps = 48/349 (13%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225 QL++G +GS K MA + ++ + A QL + + V F Sbjct: 28 QLVMGFSGSSKAVVMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFFADDV 87 Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284 + + + PE +T + +E S+N ID+ E + +V S V + Sbjct: 88 SAAEFIFASPE----KTHSRLE---SLNFLIDK----------ETSGILVTSLVGTKLHL 130 Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344 + E Y + L +G+ + + L L Y+R + + G F GD ++I+ E Sbjct: 131 PNPEIYKDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE 190 Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 + +R+ FG++I+ I +F + + + N++ + I + R A K ++ + Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVAISPADDIILTREDYQRAEKALESAVS 249 Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 + EG Y E+L T ++ ++L+ + TLF+Y Sbjct: 250 ------KAEG---------PHKAYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFDY 292 Query: 465 IPEDSLLFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPS 506 +P+ + +FVD+ + +++ + D H+ +L+ + + S Sbjct: 293 LPKGTPVFVDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSYLNYFVDS 341 >gi|283769600|ref|ZP_06342496.1| primosomal protein N' [Bulleidia extructa W1219] gi|283103868|gb|EFC05254.1| primosomal protein N' [Bulleidia extructa W1219] Length = 694 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%) Query: 591 TKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+ E++ E+ R +R+ + +++ K R +I+ K D+LVG ++ +GLD P Sbjct: 489 TQRLCEEVQKEFPKSRILRMDFDNTQRKNAHR-KILESFGNHKADILVGTQMVAKGLDFP 547 Query: 650 ECGLVAILDADKEGFLRSKTS--------LIQTIGRAARNVNSKVILY 689 LV +L+AD +G RS L+Q GR+ R +++ Sbjct: 548 NVTLVGVLNAD-DGLQRSDYRSGEHTFDLLMQAAGRSGRGEKKGTVIF 594 >gi|239502743|ref|ZP_04662053.1| putative helicase [Acinetobacter baumannii AB900] Length = 427 Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 EI A + G+ ++ V + L + + IR RY+ E ER + +L Sbjct: 268 EILKAREYGMTAMVLVQHTSHGDTLLKLFDDIGIRARYIRGEDDQGERKSALTELANKDI 327 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 DVL+G +L G+D+P GL+ + K ++ +L Q IGR R Sbjct: 328 DVLIGTTILDVGVDVPAVGLIILAGGGK-----AEVALRQRIGRGLR 369 >gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931] gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931] Length = 695 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 11/155 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TK+ E++ + L R + ++ ++ R + LR G+ D+LV ++ Sbjct: 352 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 411 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ LV D D E ++ I GRA R + + IL+ K + I+ Sbjct: 412 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--DGEAILFVTPREKYMLRQIE 465 Query: 703 ETTRRREKQLEHNKKHNINP---QSVKEKIMEVID 734 + TR++ + + ++N Q E+I E I+ Sbjct: 466 KATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIE 500 >gi|294666474|ref|ZP_06731717.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603780|gb|EFF47188.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1464 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615 P+ + + Q VY ++ AQQ L+ V T+RMAE +L + RV H Sbjct: 252 PLSVVMSNDQWLQVYADVAAFAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G VLV L GLDI + LV L G RS + +Q Sbjct: 312 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366 Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 GR+ V K L+ T + ++ A+ ++ RR E Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403 >gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca] Length = 940 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 506 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 565 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 566 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 617 >gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb03] gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb18] Length = 399 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|241047288|ref|XP_002407236.1| translation initiation factor 4F, helicase subunit, putative [Ixodes scapularis] gi|215492155|gb|EEC01796.1| translation initiation factor 4F, helicase subunit, putative [Ixodes scapularis] Length = 422 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ER+ V +H ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 297 TRRKVDWLTEKMHERDFTVSALHGDMGQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 356 Query: 651 CGLVAILD 658 LV D Sbjct: 357 VSLVINFD 364 >gi|119482938|ref|XP_001261497.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181] gi|119409652|gb|EAW19600.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181] Length = 691 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655 LTE I RY+ ++ R+E +R R G++ VL+ L EG DIP +C L+A Sbjct: 320 LTETFRNYGIDARYITAKTPKDVRMEQLRAFRNGEYPVLLNCGLFTEGTDIPNIDCVLLA 379 Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680 RS+ LIQ IGR R Sbjct: 380 RP-------TRSRNLLIQMIGRGLR 397 >gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana] Length = 1386 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ D R G +++V ++L EGLD+ C LV D + S IQ+ GR AR Sbjct: 437 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 490 Query: 683 NSKVILY---ADTITKSIQLA-IDETTRRREKQLEHN 715 NS ++ D +T+S + + R RE+ L+H+ Sbjct: 491 NSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHS 527 >gi|91777020|ref|YP_546776.1| replication restart DNA helicase PriA [Methylobacillus flagellatus KT] gi|91711007|gb|ABE50935.1| replication restart DNA helicase PriA [Methylobacillus flagellatus KT] Length = 738 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 7/97 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R+ E LT L E + S + E++ + +G+ D+LVG +L +G D P Sbjct: 500 TQRLEETLTRLLPEARVLRVDRDSTRRKHALSEMLSAVHVGEVDILVGTQMLAKGHDFPN 559 Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 LV +LD D F R L+Q GRA R Sbjct: 560 LTLVGVLDTDSALFSPDFRAAERLFAQLMQVAGRAGR 596 >gi|16551654|dbj|BAB71141.1| unnamed protein product [Homo sapiens] Length = 468 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ E+I R G+ ++L+ + EGLDI EC +V + G + ++ +++Q GR A Sbjct: 213 EQKEVISKFRTGRINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 266 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736 R S +L A + + I+ ET +++ + H N+ P+ KI+E+ Sbjct: 267 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 323 Query: 737 LLEDAATTNISI 748 ++E T +I Sbjct: 324 IMEKKMKTKRNI 335 >gi|308062783|gb|ADO04671.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Cuz20] Length = 621 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFQLTNDQQNAIKEIQSDLASPIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|119509852|ref|ZP_01628995.1| Type III restriction enzyme, res subunit [Nodularia spumigena CCY9414] gi|119465461|gb|EAW46355.1| Type III restriction enzyme, res subunit [Nodularia spumigena CCY9414] Length = 527 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 16/126 (12%) Query: 575 INLAAQQGLRILLTVLTKRM--------AEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 I L LRIL +L + A++ T Y + + + + ER EI+ Sbjct: 316 IALGTDGKLRILANLLAEHFPERILIFTADNATVYSISEKLLIPAITHQTPVKERHEILT 375 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV-N 683 R G+++ LV ++L EG+D+P + IL S +Q +GR R NV N Sbjct: 376 KFREGEYNTLVASHVLNEGVDVPAASVAIILSGTG-----STREYVQRLGRVLRRGNVAN 430 Query: 684 SKVILY 689 + ILY Sbjct: 431 KRAILY 436 >gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans 2-40] gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans 2-40] Length = 1153 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%) Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY---SQMIVQLKIGDSVEQKELLSSL 312 DRMR L + IVV + S + + +Y + ++V+ +++ + LL+SL Sbjct: 95 DRMR--CLYQLSNQAQAIVVVAASTLMQRLAPANYIIANSLVVEKN--ETINRDNLLTSL 150 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 + Y+R D G F + G ++IFP A+R+ +F ++++ I F P T + + Sbjct: 151 INAGYQRVDTVFNHGEFAIRGALLDIFPMG-SSAAYRIELFDDEVDSIRTFDPETQRTVD 209 Query: 373 NVETIKI 379 V I++ Sbjct: 210 QVSKIEL 216 >gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis elegans] gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 644 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR A +L +L + IR +H ++K +ER + R G+ +LV + Sbjct: 385 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 444 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP + +++ D G + IGR R N Sbjct: 445 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 478 >gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22] gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces scabiei 87.22] Length = 1177 Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + F +A + RP + + A L + ++ P + V + ++ + E Sbjct: 38 AARPFAVAALARDAGRPVLAVTATGREAEDLAAALRSLLPPDGVVEYPAW-ETLPHERLS 96 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H +VV+ V + G+G +E Sbjct: 97 PRSDTVGRRLAVLR----RLTHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G + + + +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 149 -VALRTGGTADLNRTVEALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235 >gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta] gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta] Length = 2249 Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 551 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 605 Query: 683 NSKVILYADTITKSIQLAIDETTR 706 VIL A T A+ T R Sbjct: 606 AYHVILVAPTYKSPTVGAVQLTDR 629 >gi|166368030|ref|YP_001660303.1| primosome assembly protein PriA [Microcystis aeruginosa NIES-843] gi|166090403|dbj|BAG05111.1| primosomal protein N' [Microcystis aeruginosa NIES-843] Length = 829 Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 13/101 (12%) Query: 591 TKRMAEDLT-EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+ ++LT E+ R +R + K R E+++ G+FDVLVG +L +GLDI Sbjct: 593 TQRVTQELTKEFPDLRCLRFDSDTTRNKNAPR-ELLKLFTDGEFDVLVGTQMLTKGLDID 651 Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681 LV I+ AD G L R+ +L Q GRA R Sbjct: 652 RVTLVGIMAAD--GLLYHSDYRASERAFQTLTQVAGRAGRG 690 >gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan troglodytes] gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan troglodytes] gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan troglodytes] gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan troglodytes] Length = 938 Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|317477777|ref|ZP_07936970.1| primosomal protein N [Bacteroides sp. 4_1_36] gi|316906122|gb|EFV27883.1| primosomal protein N [Bacteroides sp. 4_1_36] Length = 821 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D + GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 616 IISDFQQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRAYERAFQLMAQVAG 675 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I I Sbjct: 676 RAGRKNKRGRVVLQTKSIDHPI 697 >gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis F0396] gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis F0396] Length = 529 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|308181071|ref|YP_003925199.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046562|gb|ADN99105.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 447 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ TK ++LT YL ++ + + +H +++ ER ++RD++ K+ +V +L Sbjct: 247 VLIFANTKERVQELTHYLRQQGLTIAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAAR 306 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690 G+DI G+ +++ D L I +GR RN + + LY+ Sbjct: 307 GIDIE--GVSHVINDDIPNDLE---FFIHRVGRTGRNGMAGTAITLYS 349 >gi|307707477|ref|ZP_07643959.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261] gi|307616429|gb|EFN95620.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261] Length = 671 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKEQKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus] Length = 934 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus] Length = 935 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|332975893|gb|EGK12770.1| DNA helicase RecG [Psychrobacter sp. 1501(2011)] Length = 748 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 9/102 (8%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 DL+E L +IR+ +H ++K E+ ++ + G+ D+LV ++ G+D+P L+ I Sbjct: 564 DLSERL---DIRIGMVHGKMKGAEKQAVMAAFKNGELDLLVATTVIEVGVDVPNASLMVI 620 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696 +A++ G + L Q GR R V+LY ++++ Sbjct: 621 ENAERLGL----SQLHQLRGRVGRGSTKSFCVLLYQTPLSET 658 >gi|315045390|ref|XP_003172070.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893] gi|311342456|gb|EFR01659.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893] Length = 689 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L ++ +H + ER + R G+ +LV + G Sbjct: 469 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 528 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V + F + T++ GR R N+ + Sbjct: 529 LDIPNVTHVVTMT-----FPPTLTTMSTESGRTVRVGNTGI 564 >gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda melanoleuca] Length = 935 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] Length = 2033 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ D R G +++V ++L EGLD+ C LV D + S IQ+ GR AR Sbjct: 1084 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 1137 Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715 NS ++ D +T+S ++ + R RE+ L H+ Sbjct: 1138 NSDYLMMVESGDLLTQSRLKKYLSGGKRMREESLHHS 1174 >gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] Length = 459 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK ED+ E L R ++ ++ +R ++I LR G D+LV ++ Sbjct: 260 MIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAAR 319 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + + +L K + AI+ Sbjct: 320 GLDVERVTHVVNYDIPTDPESYVHR----IGRTGRAGR--SGEALLLVTPREKGLLAAIE 373 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 + TR+ ++E ++N + V + Sbjct: 374 KATRQPLAEMELPTAEDVNARRVAK 398 >gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1] gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1] Length = 1187 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 22/215 (10%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + F +A + +R + + A L + ++ P + V + S+ + E Sbjct: 48 AARPFAIAALARRTERTVLAVTATGREAEDLAAALRSLLPPDEVAEYPSW-ETLPHERLS 106 Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293 PR+DT + + + R+ H + +VV+ + + G+G + + Sbjct: 107 PRSDTVGRRIAVLR----RLAHPSKDDPAAGPVSVVVAPIRSVLQPQVKGLGDL-----V 157 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 V L+ G+S + E+ +L Y R ++ RG F V G +++FP E+ RV + Sbjct: 158 PVSLRQGESADLGEVTQALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 216 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 G+D+EEI F K+ + ++++ + + P Sbjct: 217 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 245 >gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|71276566|ref|ZP_00652840.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon] gi|71900210|ref|ZP_00682349.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] gi|71162637|gb|EAO12365.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon] gi|71730043|gb|EAO32135.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1] Length = 718 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ +R + + DVLV ++ G+D+P L+ I +A++ G Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R V+S V+LY Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623 >gi|296314303|ref|ZP_06864244.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC 43768] gi|296838999|gb|EFH22937.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC 43768] Length = 494 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFNTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 >gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens] gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens] gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42; AltName: Full=RNA helicase-like protein; Short=RHELP; AltName: Full=RNA helicase-related protein; Short=RNAHP; AltName: Full=SF3b DEAD box protein; AltName: Full=Splicing factor 3B-associated 125 kDa protein; Short=SF3b125 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens] gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens] gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo sapiens] gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct] Length = 938 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus] Length = 650 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L + G + L+ V KR A+ + YL E+N +H + ER E + D + G+ +L Sbjct: 460 LKEEGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQMTIL 519 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 V + GLDI V D K S + IGR R N Sbjct: 520 VATAVAARGLDIKNVAHVVNYDLPK-----SIDEYVHRIGRTGRVGN 561 >gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H] gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain H] Length = 390 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK + LT+ + E N V MH+ + ER +I+ R KF VL+ ++ GLD+ E Sbjct: 265 TKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQE 324 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D S+ S I IGR+ R Sbjct: 325 VSLVVNYDLPN-----SRESYIHRIGRSGR 349 >gi|166713265|ref|ZP_02244472.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 717 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760] gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760] Length = 535 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 9/114 (7%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR A++L L ++ RV MH + ER + D + G + L+ +L Sbjct: 400 KVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVNYLIATDLAS 459 Query: 644 EGLDIPECGLVAI--LDADKEGFLRSKTSLIQTIGRAARNVNSKVI---LYADT 692 GLDI +V + +D E ++ I GR R+V + I YAD Sbjct: 460 RGLDIRNIEIVINYEMPSDIENYIHR----IGRTGRMGRSVEGEAISLFTYADA 509 >gi|160888490|ref|ZP_02069493.1| hypothetical protein BACUNI_00907 [Bacteroides uniformis ATCC 8492] gi|156862167|gb|EDO55598.1| hypothetical protein BACUNI_00907 [Bacteroides uniformis ATCC 8492] Length = 770 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D + GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 565 IISDFQQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRAYERAFQLMAQVAG 624 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I I Sbjct: 625 RAGRKNKRGRVVLQTKSIDHPI 646 >gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1374 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ D R G +++V ++L EGLD+ C LV D + S IQ+ GR AR Sbjct: 425 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 478 Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715 NS ++ D +T+S + + R RE+ L+H+ Sbjct: 479 NSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS 515 >gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVILYADTIT----KSIQL 699 VIL A + T +S+QL Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571 >gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1179 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 44/220 (20%), Positives = 99/220 (45%), Gaps = 22/220 (10%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLGV G+ + ++A + RP ++++ ++ A Q + + + +E V Y+ Sbjct: 26 QLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSL-----LEDLV--YN 78 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGS 286 + E+ I E +I+ R++ T L+ I+V V+ + G + Sbjct: 79 FPAEES--------IATEMAISSSELRLQRVQTLLALKTEKPIIV--VTSLAGAERLVPK 128 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +S Q + +K+GD+ + ++L+ Y + G F G ++++P +D Sbjct: 129 KQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQTPGEFAHRGSIVDVYPITFDD- 187 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386 R+ F ++++++ F T + + + I I + ++ Sbjct: 188 PIRLDFFDDELDQLKSFDVATQKSTTSFDEINIEPATDFI 227 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 30/115 (26%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERI--------------------------EIIR 626 ++ D E RN +V Y+H+ V L+RI I+ Sbjct: 815 KIVRDAIEKEITRNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILY 874 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 D G++DVLV ++ G+DIP + + +AD G L Q GR R+ Sbjct: 875 DFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGL----AQLYQLRGRVGRS 925 >gi|330004408|ref|ZP_08304929.1| helicase protein [Klebsiella sp. MS 92-3] gi|328536654|gb|EGF62977.1| helicase protein [Klebsiella sp. MS 92-3] Length = 525 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 + L + V +R + L L ER + +++ + R + +L GK DVL+G Sbjct: 373 RHNLSCMTLVRHERHGQILKAMLGERGLVASFINGKSSAATRSAKLAELASGKIDVLIGS 432 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696 +L G+D+P G V I K ++ L Q +GR R K V AD + S Sbjct: 433 TILDVGVDVPSVGAVIIAGGGK-----AEVELRQRVGRGLRKKKGKANVCFIADFLDTS 486 >gi|320103927|ref|YP_004179518.1| type III restriction protein res subunit [Isosphaera pallida ATCC 43644] gi|319751209|gb|ADV62969.1| type III restriction protein res subunit [Isosphaera pallida ATCC 43644] Length = 514 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 16/146 (10%) Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI LAA +++L +L + + + T Y R V + + KT ER E++ Sbjct: 367 EIALAAPAKIQLLRRLLDRHNGDRVLIFTHDNATVYQIAREFLVPVITHQTKTKERHEVL 426 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R G + VL +L EG+++PE + +L G +R +Q +GR R K Sbjct: 427 TKFRQGVYPVLATSRVLNEGVNVPEANVGIVLSGT--GTVREH---VQRLGRILRKAADK 481 Query: 686 VILYADTITKSIQLAIDETTRRREKQ 711 + + +T+ ++E T R +Q Sbjct: 482 EAILYEVVTRG---TVEEFTSNRRRQ 504 >gi|308064280|gb|ADO06167.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Sat464] Length = 621 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFQLTNDQQNAIKEIQSDLASPIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|254820583|ref|ZP_05225584.1| type III restriction enzyme, res subunit [Mycobacterium intracellulare ATCC 13950] Length = 1033 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%) Query: 564 ARTQV--EDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ART++ +++ D++ ++AA +GL +++ R D + R + ++ E Sbjct: 533 ARTRIVLKELRDKVADVAAMRGLGFCVSIEHARYMAD---RFNSGGVPARAVSADTLVAE 589 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R ++ LR + ++L ++L EGLDIPE V L + S T +Q +GR R Sbjct: 590 RAAALKALRDREINILFAVDLFNEGLDIPEVDTVLFLRPTE-----SATVFLQQLGRGLR 644 Query: 681 NVNSKVILYA 690 K +L A Sbjct: 645 LTAGKTVLTA 654 >gi|239638083|ref|ZP_04679042.1| phage DNA/RNA helicase [Staphylococcus warneri L37603] gi|239596366|gb|EEQ78904.1| phage DNA/RNA helicase [Staphylococcus warneri L37603] Length = 472 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 37/76 (48%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 G + +L + ++D+ E I + ++ ER +I+ D + G VL ++ Sbjct: 218 NGQKTILYAHSVEASKDIAEQFKLNGINAAHADAKTNIKERTQIMEDFKKGAIKVLCNVD 277 Query: 641 LLREGLDIPECGLVAI 656 L+ EG D+P+C V + Sbjct: 278 LISEGFDVPDCTCVIL 293 >gi|254579254|ref|XP_002495613.1| ZYRO0B15576p [Zygosaccharomyces rouxii] gi|238938503|emb|CAR26680.1| ZYRO0B15576p [Zygosaccharomyces rouxii] Length = 491 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L + +V +H ++++ ER +I D R G+ VL+ N+L G Sbjct: 343 IIFVSTKKTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDFREGRSKVLITTNVLARG 402 Query: 646 LDIPECGLVAILD 658 +DIP +V D Sbjct: 403 IDIPTVSMVVNYD 415 >gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra yezoensis] Length = 408 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+Y+ +N+ ++ T+R E L + ER+ V +H ++ +R I+R+ R Sbjct: 284 DLYETLNITQS-----IIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFR 338 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ +LL G+D+ + LV D +K + I IGR+ R Sbjct: 339 TGSTRVLITTDLLARGIDVQQVSLVVNYDLPT-----NKENYIHRIGRSGR 384 >gi|154293477|ref|XP_001547268.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10] gi|150845271|gb|EDN20464.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10] Length = 636 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE S R + D+ L + R ++ V TKR A+++ +YL+ ++ +HS+ Sbjct: 401 VEAASKRQALYDL-----LLSTPPARTIIFVNTKRSADEIDDYLFNNDLPCTSIHSDRTQ 455 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIG 676 ER + IR R GK +L+ + GLD+ V D ++ G + T I G Sbjct: 456 REREDSIRAFRNGKMPILIATGVSARGLDVHNVMHVINFDLPSNDHGGIEEYTHRIGRTG 515 Query: 677 R 677 R Sbjct: 516 R 516 >gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca mulatta] gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca mulatta] Length = 937 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|115451605|ref|NP_001049403.1| Os03g0219700 [Oryza sativa Japonica Group] gi|122247355|sp|Q10PV9|RH47B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47B gi|108706885|gb|ABF94680.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113547874|dbj|BAF11317.1| Os03g0219700 [Oryza sativa Japonica Group] gi|125542928|gb|EAY89067.1| hypothetical protein OsI_10553 [Oryza sativa Indica Group] gi|125585426|gb|EAZ26090.1| hypothetical protein OsJ_09947 [Oryza sativa Japonica Group] gi|215701156|dbj|BAG92580.1| unnamed protein product [Oryza sativa Japonica Group] Length = 573 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 +D+ L R ++ +H ++ L R +++ + G+F VLV L GLD+PEC LV Sbjct: 445 KDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVI 504 Query: 656 ILD 658 LD Sbjct: 505 NLD 507 >gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640] gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06] Length = 1164 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L S L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 >gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42-like [Sus scrofa] Length = 941 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|294668401|ref|ZP_06733504.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309719|gb|EFE50962.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 295 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ + G+ +VLV ++ G+D+P L+ Sbjct: 111 EQLQAALPELNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMV 168 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 169 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 206 >gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704] gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704] Length = 399 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357 >gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2] gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax borkumensis SK2] Length = 551 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 4/130 (3%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A++ +L+ V TK+ +L E L R +R ++ ++ +R + ++ L+ +FD+L Sbjct: 241 LEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLL 300 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + +++ GLD+P + +++ D G + I GRA R ++ IL+ + Sbjct: 301 IATDVVARGLDVPR--ITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDA--ILFVARREQH 356 Query: 697 IQLAIDETTR 706 + I+ TR Sbjct: 357 VLRQIERITR 366 >gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana] Length = 1374 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ D R G +++V ++L EGLD+ C LV D + S IQ+ GR AR Sbjct: 425 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 478 Query: 683 NSKVILY---ADTITKSIQLA-IDETTRRREKQLEHN 715 NS ++ D +T+S + + R RE+ L+H+ Sbjct: 479 NSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHS 515 >gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae] Length = 398 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 256 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 310 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 311 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 356 >gi|193784152|dbj|BAG53696.1| unnamed protein product [Homo sapiens] Length = 484 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 47 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 106 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 107 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 158 >gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio] Length = 688 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A R ++ V TKR A+ + +L + I +H + + ER + + D RLG+ VL Sbjct: 496 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVL 555 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 V ++ GLDI + V D S + IGR R N+ Sbjct: 556 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 598 >gi|194367028|ref|YP_002029638.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia R551-3] gi|194349832|gb|ACF52955.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia R551-3] Length = 703 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 16/138 (11%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER------NIRVRYMHSEVKTL 619 ++ + I LA Q+G ++ +E+L + YE +RV +H +K Sbjct: 481 ELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAA 540 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++ + + G+ D+LV ++ G+D+P L+ I +A++ G L Q GR Sbjct: 541 EKLATMVAFKAGEIDLLVATTVIEVGVDVPNASLMVIENAERLGL----AQLHQLRGRVG 596 Query: 680 RN--VNSKVILYADTITK 695 R V+ V+LY +++ Sbjct: 597 RGSAVSRCVLLYQAPLSQ 614 >gi|6320539|ref|NP_010619.1| Irc3p [Saccharomyces cerevisiae S288c] gi|74676421|sp|Q06683|IRC3_YEAST RecName: Full=Putative ATP-dependent helicase IRC3; AltName: Full=Increased recombination centers protein 3 gi|914990|gb|AAB64767.1| Ydr332wp [Saccharomyces cerevisiae] gi|151942308|gb|EDN60664.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|190404727|gb|EDV07994.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi|207346435|gb|EDZ72928.1| YDR332Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259145569|emb|CAY78833.1| Irc3p [Saccharomyces cerevisiae EC1118] gi|285811350|tpg|DAA12174.1| TPA: Irc3p [Saccharomyces cerevisiae S288c] gi|323338244|gb|EGA79477.1| Irc3p [Saccharomyces cerevisiae Vin13] Length = 689 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL + K + L + + I Y+ S+ K +ER II+ + G+ +VL+ + EG Sbjct: 282 LLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFKNGETEVLMNCGIFTEG 341 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D+P + + K S++ LIQ IGR R +SK Sbjct: 342 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 376 >gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis elegans] gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 641 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TKR A +L +L + IR +H ++K +ER + R G+ +LV + Sbjct: 382 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 441 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIP + +++ D G + IGR R N Sbjct: 442 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 475 >gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102] gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102] Length = 1192 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 27/179 (15%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 LK GD ++ EL +L + Y+R GT+ GD ++I+P E + R+ FG + Sbjct: 145 LKKGDELDLDELAETLARLGYERMSTIDQEGTWSRRGDIVDIYPVSSE-LPVRLEFFGEE 203 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 ++++ EF P T + + V+ +++ TP ++E + E RL Sbjct: 204 LDKLREFDPATQRSLDPVDRLQL-------TPTGFSPLVADQLRESMP------EGLDRL 250 Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 L + E E+LE G+ + + R L G G+ P L +Y+P + + +DE Sbjct: 251 LGDEATE-------ELLE-GGTPEGL----RRLMGLAWGQ-PACLLDYLPASAAVVIDE 296 >gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum Liverpool] Length = 411 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT + ER+ V MH ++ R I+R+ R G VL+ +LL G+D+ + Sbjct: 286 TRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARGIDVQQ 345 Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 LV D A KE + I IGR+ R Sbjct: 346 VSLVINYDLPATKENY-------IHRIGRSGR 370 >gi|300088556|ref|YP_003759078.1| primosomal protein N' [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528289|gb|ADJ26757.1| primosomal protein N' [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 808 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676 I D R G+ D+L+G ++ GLD+P GLV +++AD L R+ L Q G Sbjct: 609 IFDDFRSGRADILIGTQVVARGLDLPGVGLVGVVNADTSLNLPDFRSAERTFQLLAQVAG 668 Query: 677 RAARN 681 RA R Sbjct: 669 RAGRG 673 >gi|289705870|ref|ZP_06502250.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58] gi|289557413|gb|EFD50724.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58] Length = 730 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ +H + E+ ++ G DVLV ++ G+D+P ++AILDAD G Sbjct: 544 GLRIDAVHGRMDQAEQDAAMQAFARGATDVLVATTVIEVGVDVPNATVMAILDADDFGL- 602 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R + V L A Sbjct: 603 ---STLHQLRGRVGRGPGAAVCLLA 624 >gi|288906074|ref|YP_003431296.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34] gi|306832113|ref|ZP_07465267.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732800|emb|CBI14376.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34] gi|304425552|gb|EFM28670.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 671 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L+ Y + + V MH +K E+ I++D + K VLV ++ G+++P ++ Sbjct: 486 EELSAY-FADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544 Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 I+DAD+ G + L Q GR R + S IL A+ T++ Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTQT 582 >gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] Length = 566 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK ED+ E L R ++ ++ +R ++I LR G D+LV ++ Sbjct: 250 MIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVATDVAAR 309 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + + +L K + AI+ Sbjct: 310 GLDVERITHVVNYDIPTDPESYVHR----IGRTGRAGR--SGEALLLVTPREKGLLAAIE 363 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 + TR+ ++E ++N + V + Sbjct: 364 KATRQPLTEMELPTPADVNARRVAK 388 >gi|240139571|ref|YP_002964047.1| putative helicase domain protein with DEAD/DEAH motif [Methylobacterium extorquens AM1] gi|240009544|gb|ACS40770.1| putative helicase domain protein with DEAD/DEAH motif [Methylobacterium extorquens AM1] Length = 373 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A + + + I + +E ER ++RD R GK LV + +L G ++PE L+ Sbjct: 86 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 145 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707 A+L + L +Q +GRA R K V+ YA + + +D T R Sbjct: 146 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 195 >gi|19387221|gb|AAL87141.1|AF479822_1 DEAD box RNA helicase Vasa [Oryzias latipes] Length = 396 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 214 RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVAS 273 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 274 RGLDIPDVQHVVNFD-----LPNTIDDYVHRIGRTGRCGNT 309 >gi|58580774|ref|YP_199790.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425368|gb|AAW74405.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 717 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii B565] gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565] Length = 633 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 11/154 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK AE+L L R +H ++ R + LR G+ D+L+ +++ Sbjct: 250 LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 309 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + IL+ + + AI+ Sbjct: 310 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGR--KGEAILFVAPRERRMLRAIE 363 Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVI 733 TR+ + ++ +IN + KE+I E + Sbjct: 364 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETM 397 >gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp. C150] gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp. C150] Length = 528 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|302534662|ref|ZP_07287004.1| ATP-dependent helicase [Streptomyces sp. C] gi|302443557|gb|EFL15373.1| ATP-dependent helicase [Streptomyces sp. C] Length = 1038 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A + +R L ++ A+ + ++ + + + E R + DLR G+ +V+ Sbjct: 550 APEAMRALGFCVSVAHAQFMADFFNQAGFQAVALSGETPRPTRKAALDDLRAGRLNVIFS 609 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++L EGLD+P+ + +L S T +Q +GR R +K +L Sbjct: 610 VDLFNEGLDVPDVDTLLLLRPTS-----SATVFLQQLGRGLRRSANKPVL 654 >gi|225075727|ref|ZP_03718926.1| hypothetical protein NEIFLAOT_00743 [Neisseria flavescens NRL30031/H210] gi|224952998|gb|EEG34207.1| hypothetical protein NEIFLAOT_00743 [Neisseria flavescens NRL30031/H210] Length = 577 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ + Sbjct: 37 VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++ A D + V + + + V + LK G +++ L S LV Sbjct: 93 -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP E + +R+ +F ++I+ I F T + I V Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227 >gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC 23834] gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC 23834] Length = 431 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK M+E L + LYE+ +H ++ R + DLR G+ VLV ++ G+D+P Sbjct: 255 TKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKVLVATDVAARGIDVPS 314 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V D K+ + IGR R Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339 >gi|146304120|ref|YP_001191436.1| type III restriction enzyme, res subunit [Metallosphaera sedula DSM 5348] gi|145702370|gb|ABP95512.1| type III restriction enzyme, res subunit [Metallosphaera sedula DSM 5348] Length = 660 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV+ + E+ ER++I+ + + G DV++ ++ EG+DIPE L+ + D K S Sbjct: 321 RVKTLTGELNKEERLQIVNEAKSGNVDVIISTHVGEEGIDIPEARLLIMTDVPK-----S 375 Query: 668 KTSLIQTIGRAARNVNSKVILY 689 Q +GR R SK + Y Sbjct: 376 PLRFYQRLGRLIRKSESKGVKY 397 >gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 642 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 11/154 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK AE+L L R +H ++ R + LR G+ D+L+ +++ Sbjct: 261 LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 320 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + IL+ + + AI+ Sbjct: 321 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGR--KGEAILFVAPRERRMLRAIE 374 Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVI 733 TR+ + ++ +IN + KE+I E + Sbjct: 375 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETM 408 >gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 911 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V TK+ EDL + + +H + ER +++D R GK +LV ++ Sbjct: 480 KIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 539 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + V D + S I IGR R Sbjct: 540 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 571 >gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys] Length = 938 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|330466258|ref|YP_004404001.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032] gi|328809229|gb|AEB43401.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032] Length = 734 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ +H + E+ ++R G+ DVLV ++ G+D+P ++ +LDAD+ G Sbjct: 550 GLRIGVLHGRLPADEKDAVMRSFANGELDVLVATTVVEVGVDVPNATMMVVLDADRFGV- 608 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + L Q GR R + L T+ Sbjct: 609 ---SQLHQLRGRVGRGSAPGLCLLVTEATEG 636 >gi|255951308|ref|XP_002566421.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593438|emb|CAP99823.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1109 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 15/123 (12%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEII 625 N +Q R+++ V + AE++T L YE IR V S K E +++II Sbjct: 663 NGTSQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMDQKTQLKII 722 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D + G ++ +V ++ EGLDI E L+ D+ S ++Q +GR R Sbjct: 723 EDFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRAGN 777 Query: 686 VIL 688 + L Sbjct: 778 ITL 780 >gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii] Length = 942 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|326634444|pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 gi|326634446|pdb|3PEX|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6 gi|326634450|pdb|3PEZ|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6 And Adp Length = 395 Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 307 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 342 >gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] Length = 513 Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LTE L R +H ++ +R+ +R + G DVLV ++ GLDI Sbjct: 267 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDI-- 324 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 G+ + + D S I GRA R + + K + AI++TT+R+ Sbjct: 325 SGVTHVYNFDVPQDPESYVHRIGRTGRAGR--TGMAMTFITPREKDMLRAIEQTTKRK 380 >gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185] gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185] Length = 1162 Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 25/216 (11%) Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315 R+ + S +E+N IV+ V+ + ++Y S + LK GDS + ++ L Sbjct: 96 RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDT 153 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 Y + G F + G ++IFP+ + ++ R+ +F ++E I F P T + ++ V+ Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212 Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435 +I++ + PT ++A++ ++ + R + K E + + Q ++ L Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRSL----- 258 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 IENY + TLF+Y+P+D+ L Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287 >gi|332671921|ref|YP_004454929.1| type III restriction protein res subunit [Cellulomonas fimi ATCC 484] gi|332340959|gb|AEE47542.1| type III restriction protein res subunit [Cellulomonas fimi ATCC 484] Length = 1029 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR +++V N+A +GL ++V R + E+ I + + +R + Sbjct: 531 ARRVIKEVAARANVATLRGLGFCVSVQHARF---MAEHFNRHGIAAVAVWGDSPRSDREQ 587 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 +RDL G+ VL ++L EG+D+P+ + +L + S T +Q +GR R Sbjct: 588 ALRDLASGRIRVLFSVDLFNEGVDVPDVDTILMLRPTE-----SPTLFLQQLGRGLRKTP 642 Query: 684 SK 685 K Sbjct: 643 HK 644 >gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81] Length = 445 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LTE + E N V MH E+ ER I+++ R Sbjct: 272 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFR 326 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 327 SGASRVLITTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 372 >gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC 49124] gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC 49124] Length = 528 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|229829117|ref|ZP_04455186.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM 14600] gi|229792280|gb|EEP28394.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM 14600] Length = 683 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 44/297 (14%) Query: 523 PTTIVVSATPGSWELEQ-CQGIIVEQIIR--PTG---LVDPPVEIRSARTQVEDVYDEIN 576 P +V+SATP L G + +IR P+G + + + ++ + V E+ Sbjct: 407 PNVLVMSATPIPRTLAMILYGDMNLSVIRELPSGRRKIKNAIIRSDKKKSAWQFVAREV- 465 Query: 577 LAAQQGLRILLTVLTKRMAED--LTEY------LYERNIRVRYMHSEVKTLERIEIIRDL 628 LA +Q I + ++ED + +Y Y I V +H +K+ ++ +++ D Sbjct: 466 LAGRQAYVICPLIEASDVSEDENVMDYAQALKDFYGDQITVGLLHGRMKSKDKDKVMEDF 525 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GK VLV ++ G+++P ++ I +A++ G L Q GR R + + Sbjct: 526 ASGKIQVLVSTTVVEVGVNVPNASVMLIENANRFGL----AQLHQLRGRVGRGADQAYCI 581 Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IMEVIDPILLEDA 741 + D+ +E +RR E + N I + +K + I + D D Sbjct: 582 FIDSSDS------EEISRRLEILVHSNDGFAIASEDLKLRGPGDFFGIRQSGDL----DF 631 Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798 +I DA L ++ + K L+ A L FEE A IR ++R + Y Sbjct: 632 KIADIYQDADVLQMASEDSKEILE--------ADPRLVFEEHAGIRSFLERRRQEVY 680 >gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] Length = 427 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ K +LT L + V MHS+++ +R +++RD + G DVLV +++ Sbjct: 246 RTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI +V D D E + + IGR AR N + Sbjct: 306 RGIDIDNIRVVINYDIPHDPEDY-------VHRIGRTARGTNGE 342 >gi|188578256|ref|YP_001915185.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522708|gb|ACD60653.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 717 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii] Length = 942 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII helicase [Cryptosporidium parvum Iowa II] gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII helicase [Cryptosporidium parvum Iowa II] Length = 396 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 24/133 (18%) Query: 560 EIRSARTQVE----------DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 +IR QVE D+YD + + ++ TK E L++ + E + V Sbjct: 235 KIRQYHVQVEEEKWKFETLCDLYDTLTVTQS-----IIFCNTKNKVEWLSKKMMENHFTV 289 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRS 667 ++H ++ + R EI+R+ R GK VL+ +L G+D+ + LV D +KE + Sbjct: 290 SFVHGDLPQVTREEILREFREGKTRVLITTDLWGRGIDVQQVNLVVNYDLPINKELY--- 346 Query: 668 KTSLIQTIGRAAR 680 I IGR+ R Sbjct: 347 ----IHRIGRSGR 355 >gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM 5305] gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM 5305] Length = 1114 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 65/128 (50%), Gaps = 4/128 (3%) Query: 255 IDRMRHSATRSLLERND---CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311 + R+ + +L ER C+V S + + + S + + LK+GD ++ +E Sbjct: 120 LKRLHQAGDETLPERPAFPRCLVTSIEALLQPVPSHQQLREFTRTLKVGDELDLEEWSHW 179 Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV++ ++R + G F + G +++FP+ R+ +FG+++E I F + +KI Sbjct: 180 LVERGFERTTAIELPGEFAIHGGILDLFPTD-SLAPLRIELFGDEVESIRTFDVESQRKI 238 Query: 372 RNVETIKI 379 ++ +++ Sbjct: 239 DTLKQVQL 246 >gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia] gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia] Length = 946 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 I + G +I++ V TK ED+ + + +H + ER +++D R GK + Sbjct: 485 IKKSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSN 544 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +L+ ++ GLD+ + V D + S + + IGR R Sbjct: 545 ILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 585 >gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1] gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax] Length = 388 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK + LT+ + E N V MH+ + ER +I+ R KF VL+ ++ GLD+ E Sbjct: 263 TKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQE 322 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D S+ S I IGR+ R Sbjct: 323 VSLVVNYDLPN-----SRESYIHRIGRSGR 347 >gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3) [Cryptosporidium hominis TU502] gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3) [Cryptosporidium hominis] Length = 395 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 24/133 (18%) Query: 560 EIRSARTQVE----------DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609 +IR QVE D+YD + + ++ TK E L++ + E + V Sbjct: 234 KIRQYHVQVEEEKWKFETLCDLYDTLTVTQS-----IIFCNTKNKVEWLSKKMMENHFTV 288 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRS 667 ++H ++ + R EI+R+ R GK VL+ +L G+D+ + LV D +KE + Sbjct: 289 SFVHGDLPQVTREEILREFREGKTRVLITTDLWGRGIDVQQVNLVVNYDLPINKELY--- 345 Query: 668 KTSLIQTIGRAAR 680 I IGR+ R Sbjct: 346 ----IHRIGRSGR 354 >gi|326634448|pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 307 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 342 >gi|325979039|ref|YP_004288755.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178967|emb|CBZ49011.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 671 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L+ Y + + V MH +K E+ I++D + K VLV ++ G+++P ++ Sbjct: 486 EELSAY-FADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544 Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 I+DAD+ G + L Q GR R + S IL A+ T++ Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTQT 582 >gi|315613614|ref|ZP_07888521.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296] gi|315314305|gb|EFU62350.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296] Length = 671 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKEQKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|306834226|ref|ZP_07467346.1| DNA helicase RecG [Streptococcus bovis ATCC 700338] gi|304423799|gb|EFM26945.1| DNA helicase RecG [Streptococcus bovis ATCC 700338] Length = 671 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L+ Y + + V MH +K E+ I++D + K VLV ++ G+++P ++ Sbjct: 486 EELSAY-FADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544 Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 I+DAD+ G + L Q GR R + S IL A+ T++ Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTQT 582 >gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium yellowstonense SS-5] Length = 405 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+ + ++++ TK A++L E L E +H + +R ++ + R GK +L Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLDI LV G R S I IGR R Sbjct: 301 VATDVAARGLDIKGVDLVI-----NYGLPRDAESYIHRIGRTGR 339 >gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus musculus] Length = 1012 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 584 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 643 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 644 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 695 >gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis] Length = 400 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 214 RTMVFVETKRQADFIAVFLCQEKVSTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 273 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 274 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 309 >gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4] gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4] gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus nidulans FGSC A4] Length = 399 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357 >gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus] Length = 835 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 517 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 576 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 577 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 630 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 631 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 657 >gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1] gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1] Length = 935 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 60/309 (19%), Positives = 126/309 (40%), Gaps = 27/309 (8%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 +EK LL GV + + +++ QRP I++ ++ A L E N P V F Sbjct: 22 KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286 P T T + +++++ ++ + R +V++ + Y + Sbjct: 81 -------PVDATIATQTAVASPDELSQRLQTLKFLTEK----RAGIVVITPQALQYKLSD 129 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 + + K + EL + + Y+R++I G F GD ++++P E+ Sbjct: 130 PRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQENP 189 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ FG++++ + EF T + + + + I V L+ A++ IK+++ Sbjct: 190 V-RIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNES 248 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + E ++ +++LE G ENY+ + P L +Y+ Sbjct: 249 IANEEN---------VKNHFVKAIDLLEADGLP---ENYAFLIDYLLPKS--FNLVDYLD 294 Query: 467 EDSLLFVDE 475 ++ LL D+ Sbjct: 295 KNGLLLFDD 303 >gi|256269521|gb|EEU04808.1| Irc3p [Saccharomyces cerevisiae JAY291] Length = 689 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL + K + L + + I Y+ S+ K +ER II+ + G+ +VL+ + EG Sbjct: 282 LLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDSIIQKFKNGETEVLMNCGIFTEG 341 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D+P + + K S++ LIQ IGR R +SK Sbjct: 342 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 376 >gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna [Monodelphis domestica] Length = 404 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 10/113 (8%) Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 V D+YD + + + ++ TKR + LTE + E N V +H ++ + ER I+++ Sbjct: 261 VCDLYDSLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKE 315 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R G VL+ ++ GLD+P+ L+ D ++ I IGR+ R Sbjct: 316 FRSGVNRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 363 >gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1 Length = 398 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 256 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 310 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 311 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 356 >gi|328771263|gb|EGF81303.1| hypothetical protein BATDEDRAFT_87897 [Batrachochytrium dendrobatidis JAM81] Length = 452 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 9/109 (8%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 DL E ++ I +H R +II++ G VL+ ++ EG+DIP V Sbjct: 327 NDLVEAFQKKGIPAIGVHGNTPLHTRQKIIKEFSNGNIPVLINCGIVTEGVDIPRIDCVM 386 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLA 700 + K L L Q +GR R K V + DT+ +S+Q A Sbjct: 387 LARPTKSSGL-----LQQMLGRGMRKFEGKKRCIVFDFVDTMNRSLQAA 430 >gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183] gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175] gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183] gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175] Length = 1165 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 25/208 (12%) Query: 265 SLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 S +E+N IV+ V+ + ++Y S + LK GDS + ++ L Y + Sbjct: 104 SQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQV 161 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383 G F + G ++IFP+ + ++ R+ +F ++E I F P T + ++ V++I++ Sbjct: 162 YEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAK 220 Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443 + PT ++A++ ++ + R + K E + + Q ++ L IE Sbjct: 221 EF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRSL-------MPAGIE 264 Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 NY + TLF+Y+P+D+ L Sbjct: 265 NYLPLFF-----DDTATLFDYLPKDTQL 287 >gi|285019874|ref|YP_003377585.1| helicase [Xanthomonas albilineans GPE PC73] gi|283475092|emb|CBA17591.1| putative helicase protein [Xanthomonas albilineans] Length = 829 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 33/183 (18%) Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI------IRPTG----------LVDPPVEIR-SA 564 RP I+ SAT G+ + +I +++ PTG +V+P + +R SA Sbjct: 237 RPQFILCSATIGN-PRAHAEALIEQRVHAITDSGAPTGDKHVLLWNPPVVNPDLGLRASA 295 Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVK 617 R+Q + +A + GL+ L+ ++ M E LT+YL + + R+R Sbjct: 296 RSQSNRI---ARIAIKSGLKTLVFAQSRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYL 352 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 ER E R +R G D +V + L G+DI +V + G+ S + Q GR Sbjct: 353 PSERREAERAMRAGSIDGIVSTSALELGVDIGALDVVVL-----NGYPGSVAATWQRFGR 407 Query: 678 AAR 680 A R Sbjct: 408 AGR 410 >gi|218296433|ref|ZP_03497176.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23] gi|218243227|gb|EED09758.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23] Length = 767 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ L +L ++ ++LT YL+ +RV + ER I+ LR G+ V V Sbjct: 390 GAQGALMAPTEILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQVAV 449 Query: 638 GIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 G + L++EG++ + GL + + + G L+ + L + A+ +++ A I +S Sbjct: 450 GTHALIQEGVEFQDLGLAVVDEEHRFGVLQRRALL-----KMAKTPPDVLVMSATPIPRS 504 Query: 697 IQLAI 701 + L + Sbjct: 505 LALTL 509 Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ +H ++ E+ ++ R G +D+LV ++ G+DIP L+ + +A++ G Sbjct: 587 RIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGVDIPRATLIIVENAERFGL--- 643 Query: 668 KTSLIQTIGRAARN 681 L Q GR R Sbjct: 644 -AQLHQLRGRVGRG 656 >gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568] gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568] Length = 1176 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 53/296 (17%), Positives = 125/296 (42%), Gaps = 35/296 (11%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 +TGS A+++E P +++AP+ A +L E + F + V+ ++ Sbjct: 49 LTGSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQF-----TDQMVTTLSDWETL 103 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 Y D++ + I+ ++ + H T I++ + + + E + Sbjct: 104 PY----DSFSPHQEIISARLSSLYHLPTMV----RGVIILPVNTLMQRVCPHEFLHGHAL 155 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +K G + + +L + L + Y+ D + G F G +++FP E+ +R+ F + Sbjct: 156 VMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PYRIDFFDD 214 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ + F + + V+ I + + T + + +E+ ++R Sbjct: 215 EIDSLRTFDVDNQRTLSEVDAINLLPAHEFPTDKNAIELFRSQWREQFEVR--------- 265 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 +A+ + Q++ + G+ + Y + L +P P+LF Y+P+++L+ Sbjct: 266 -RDAEHIYQQV--------SKGTWPAGIEYWQPLFF---SQPLPSLFSYLPDNTLI 309 >gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens] Length = 919 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 482 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 541 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 542 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 593 >gi|70926570|ref|XP_735804.1| helicase [Plasmodium chabaudi chabaudi] gi|56509789|emb|CAH86331.1| helicase, putative [Plasmodium chabaudi chabaudi] Length = 260 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 79 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTE 138 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R+E I R G+ DVLVG ++ +GLD P V D K+ + + IGR R Sbjct: 139 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 193 >gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491] gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491] Length = 1296 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ + Sbjct: 37 VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++ A D + V + + + V + LK G +++ L S LV Sbjct: 93 -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP E + +R+ +F ++I+ I F T + I V Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 987 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1043 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1044 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1079 >gi|323309653|gb|EGA62861.1| Irc3p [Saccharomyces cerevisiae FostersO] Length = 689 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 LL + K + L + + I Y+ S+ K +ER II+ + G+ +VL+ + EG Sbjct: 282 LLFGVDKAHVQSLHKLFKDNGINTBYVTSDTKQIERDXIIQKFKNGETEVLMNCGIFTEG 341 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 D+P + + K S++ LIQ IGR R +SK Sbjct: 342 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 376 >gi|317011657|gb|ADU85404.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SouthAfrica7] Length = 621 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIVCP-------NNSERLKAFIASLPFQLTNDQQNAIKEIQNDLTSPIACKRLIVGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei] gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei] Length = 402 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+Y+ +N+ + ++ T+R + LTE + + V +H ++ ER I+R+ R Sbjct: 261 DLYNVVNVT-----QAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++L G+D+ + LV D ++ + I IGR+ R Sbjct: 316 SGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 361 >gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus salivarius SK126] gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus salivarius SK126] Length = 528 Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS] Length = 388 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 228 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 282 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 283 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 328 >gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp. zooepidemicus] gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp. zooepidemicus] Length = 538 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|237808346|ref|YP_002892786.1| type III restriction protein res subunit [Tolumonas auensis DSM 9187] gi|237500607|gb|ACQ93200.1| type III restriction protein res subunit [Tolumonas auensis DSM 9187] Length = 692 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 13/110 (11%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 + G+R + V TKR+ TE+ +I +E + L+R I+++ LGK DV+V I Sbjct: 532 EDGIRAVEYV-TKRLG---TEF----DISCNKFTAETELLDRSAILKNFSLGKIDVIVAI 583 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 L EG+D+P IL + + IQ GR RN +K Y Sbjct: 584 KCLDEGVDVPSTQYAHILASST-----NPREYIQRRGRVLRNSPNKEYAY 628 >gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus ATCC 10500] gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus ATCC 10500] Length = 680 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L ++L +N +H + ER + R G+ +LV + G Sbjct: 455 LIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNGRCPILVATAVAARG 514 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 515 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 550 >gi|242279733|ref|YP_002991862.1| type III restriction protein res subunit [Desulfovibrio salexigens DSM 2638] gi|242122627|gb|ACS80323.1| type III restriction protein res subunit [Desulfovibrio salexigens DSM 2638] Length = 449 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAI 656 L++ L+++ + V + + ER EII DL GK VL +L+ EG D P GL + Sbjct: 336 LSDLLFDQGVEVAVLTGKTPAGEREEIINDLNAGKIKVLASTASLIGEGFDCP--GLSTL 393 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK 685 ++SK L+Q IGR R + K Sbjct: 394 FLCSP---IKSKGRLVQIIGRILRPADGK 419 >gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 405 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L+ + ++++ TK A++L E L E +H + +R ++ + R GK +L Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLDI LV G R S I IGR R Sbjct: 301 VATDVAARGLDIKGVDLVI-----NYGLPRDAESYIHRIGRTGR 339 >gi|156839635|ref|XP_001643506.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM 70294] gi|156114120|gb|EDO15648.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM 70294] Length = 478 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L + +V +H ++++ ER +I D R G+ VL+ N+L G Sbjct: 330 IIFVSTKKTANLLYAKLKQEGHQVSILHGDLQSTERDRLIDDFREGRSKVLITTNVLARG 389 Query: 646 LDIPECGLVAILDADKEGFLRSK---TSLIQTIGRAAR 680 +DIP +V ++ D L + + I IGR R Sbjct: 390 IDIPTVSMV--VNYDLPTSLNGQADPATYIHRIGRTGR 425 >gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus musculus] Length = 927 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 499 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 558 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 559 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 610 >gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83] gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas gingivalis W83] Length = 427 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ K +LT L + V MHS+++ +R +++RD + G DVLV +++ Sbjct: 246 RTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685 G+DI +V D D E + + IGR AR N + Sbjct: 306 RGIDIDNIRVVINYDIPHDPEDY-------VHRIGRTARGTNGE 342 >gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis SK1057] Length = 1167 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID + + + + Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++ + Y + L +G + L+ L + YK+ + +G + + Sbjct: 130 LLPDPIDFKY----------TNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF D +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERS-ADSPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNSNTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|270294812|ref|ZP_06201013.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274059|gb|EFA19920.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 821 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D + GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 616 IISDFQQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRAYERAFQLMAQVAG 675 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I I Sbjct: 676 RAGRKNKRGRVVLQTKSIDHPI 697 >gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] Length = 565 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +GL I+ + TKR A + E L ER +H ++ R + +R R GK DVLV Sbjct: 276 ATGRGLTIVFS-RTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHGKVDVLV 334 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++ G+D+ + V ++ + + + IGR R N+ V + Sbjct: 335 ATDVAARGIDVEDVTHVINYQCPED-----EKTYLHRIGRTGRAGNTGVAV 380 >gi|115371929|ref|ZP_01459242.1| transcription-repair coupling factor [Stigmatella aurantiaca DW4/3-1] gi|115371164|gb|EAU70086.1| transcription-repair coupling factor [Stigmatella aurantiaca DW4/3-1] Length = 494 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 39/265 (14%) Query: 130 SINNHSKDITFFQ------MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183 + N D F Q ++ P+GD A + + L+ H R + Q G+ G+ + Sbjct: 32 GLRNPGMDTPFSQTAGSEALRGAVPPTGDPFARLLERLQPGH-RARTQ---GLHGAARGH 87 Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----------VSYYDYYQ 233 +A++ ++ P + +A ++ A L + F N V YD Sbjct: 88 VLARLSRTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAPRVLRLPADEVLPYDELS 147 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 PE ++ ++E++ + H + + R +V+S + + + V + + + Sbjct: 148 PEPHI------------VSERLGTLFHLSQGT---RFPALVLSLRALLRRVLPVSTMTGL 192 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 L G +++ L LV Y+ + GTF V G +++F S L + R+ F Sbjct: 193 AQLLTTGQDIDRDTLARQLVLMGYQSSPLVEDPGTFSVRGGILDVF-SPLYERPVRLEFF 251 Query: 354 GNDIEEISEFYPLTGQKIRNVETIK 378 G+ IE I F P R V+++K Sbjct: 252 GDTIESIRLFEP---DNQRTVDSLK 273 >gi|145593830|ref|YP_001158127.1| ATP-dependent DNA helicase RecG [Salinispora tropica CNB-440] gi|145303167|gb|ABP53749.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440] Length = 733 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ +H + E+ ++R G DVLV ++ G+D+P ++ +LDAD+ G Sbjct: 549 GLRIGVLHGRLPAEEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMIVLDADRFGV- 607 Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688 + L Q GR R + + L Sbjct: 608 ---SQLHQLRGRVGRGSAAGLCL 627 >gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis] Length = 627 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A+ +GL L+ V TKR A+ LT++L + +H + ER + + G+ +LV Sbjct: 413 ASNEGL-TLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILV 471 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D + + IGR R N+ V Sbjct: 472 ATAVAARGLDIPNVTHVINFDLPND-----IDDYVHRIGRTGRAGNTGV 515 >gi|329767219|ref|ZP_08258746.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341] gi|328836886|gb|EGF86533.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341] Length = 669 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVT 177 N +I S +NN KDI F+ + +G Q I +++ ++ K+ +LL G Sbjct: 230 NSRIEDTRYSVGVNN--KDIKVFKDSLPFTLTGAQSRVIDEIVTDLNEPYKMDRLLQGDV 287 Query: 178 GSGKTFTMAKVIEAMQRPAI---VMAPNKILAAQLYSEFKNFF 217 GSGKT A + A + +MAP +ILA Q + F FF Sbjct: 288 GSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFF 330 >gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J] gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J] Length = 561 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 270 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAARGLDI-- 327 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 328 SGVTHVYNYD---ITQDPESYVHRIGRTGR 354 >gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Equus caballus] Length = 935 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus flavus NRRL3357] gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88] gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40] gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus flavus NRRL3357] Length = 399 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357 >gi|119776507|ref|YP_929247.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B] gi|119769007|gb|ABM01578.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B] Length = 691 Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 VL + AED L E + + +H +K E+ I+ D + GK D+LV ++ G+ Sbjct: 496 VLECQAAEDTAGGLKEALPELGIGLVHGRMKGAEKQAIMADFKAGKLDLLVATTVIEVGV 555 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698 D+P L+ I + ++ G L Q GR R + V+LY ++ + Q Sbjct: 556 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGAVASHCVLLYKAPLSFTAQ 605 >gi|307638179|gb|ADN80629.1| ATP-dependent DNA helicase [Helicobacter pylori 908] gi|325996775|gb|ADZ52180.1| ATP-dependent DNA helicase [Helicobacter pylori 2018] gi|325998367|gb|ADZ50575.1| ATP-dependent DNA helicase [Helicobacter pylori 2017] Length = 628 Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P+ S ++N F + + DQ AI ++ + S + L++G Sbjct: 214 NAKIACPNNSERLDN-------FIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDV 266 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY E F P Sbjct: 267 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYHEALKFLP 308 >gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus] gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus] gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus] Length = 929 Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547] gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547] Length = 499 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +GL I+ T TKR A + E L ER +H ++ R + +R R GK DVLV + Sbjct: 256 RGLTIVFT-RTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFRTGKVDVLVATD 314 Query: 641 LLREGLDI 648 + G+D+ Sbjct: 315 VAARGIDV 322 >gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis] Length = 708 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 559 VEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 VE R+ + D+ N Q+ L L+ V TK+ A+ L E+L+ ++ V +H + Sbjct: 463 VEEHEKRSYLLDLLGACNFQEPTQESL-TLVFVETKKGADMLEEFLHNQHYPVTSIHGDR 521 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLI 672 ER + +R R G +LV + GLDIP V D D E ++ +T + Sbjct: 522 SQHEREDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRM 581 Query: 673 QTIGRAARNVNSK 685 +G A NSK Sbjct: 582 GNLGLATSFFNSK 594 >gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group] gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group] gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group] gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group] Length = 708 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D+I + + G +I++ TKRM + L L R +H + ER ++ + R G+ Sbjct: 416 DQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGR 474 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +LV ++ GLDI + +V D F + IGR R Sbjct: 475 CPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 517 >gi|328950394|ref|YP_004367729.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM 14884] gi|328450718|gb|AEB11619.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM 14884] Length = 775 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 AQ L +L K+ ++L+ YL+ +RV + + E+ E++R +R G+ DV+V Sbjct: 399 GAQSALMAPTEILAKQHFQNLSRYLWPLGVRVELLVGAMSAAEKREVLRRVREGEVDVVV 458 Query: 638 GIN-LLREGLDIPECGLVAILDADKEGFLRSKTSL 671 G + L++E ++ + GL I + + G L+ + L Sbjct: 459 GTHALIQEDVEFKDLGLAVIDEEHRFGVLQRRALL 493 Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R+A++L L ++R+ +H + E+ ++ R +FD+LV ++ G+DIP Sbjct: 582 RLADELRALLP--DVRIEILHGRMSAAEKDAVMERFRRQEFDLLVSTTVIEVGVDIPNAT 639 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQL--AIDETT 705 L+ I +A++ G L Q GR R +++ DT ++++ I+E+T Sbjct: 640 LMVIENAERFGL----AQLHQLRGRVGRGDREAYCILIAGDTSKRTMKRLKVIEEST 692 >gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411] gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411] Length = 1032 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%) Query: 272 CIVVSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 + ++++S I + S +S+ ++Q+K GD VE E + L + YKR D+ G F Sbjct: 85 LVFLTNISALIQPVISFDSFIDKVIQIKRGDVVELDEFIKRLSELFYKRVDMVYAPGEFA 144 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 G I++F S D R+ F ++++ I FY L Q R ETI Sbjct: 145 KRGAIIDLF-STFYDKPMRIEFFDDEVDSIKLFY-LENQ--RTFETI 187 >gi|308469293|ref|XP_003096885.1| CRE-DRH-1 protein [Caenorhabditis remanei] gi|308241300|gb|EFO85252.1| CRE-DRH-1 protein [Caenorhabditis remanei] Length = 1037 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 18/129 (13%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +++E +R G+ VLV ++ EGLDI +C LV K + ++ + +Q GR Sbjct: 755 KQMEKLRKFASGEIRVLVATSVAEEGLDIAKCNLVI-----KYNYATNEIAHVQRRGR-G 808 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK---KHNINPQSVKEKIM----EV 732 R +NSK IL IT SI L D+ R+K+ NK K NP + +E + + Sbjct: 809 RAINSKCIL----ITNSIPLR-DQEGANRDKENMMNKALLKIQSNPFAFREAVTAEASNI 863 Query: 733 IDPILLEDA 741 + IL EDA Sbjct: 864 WNRILREDA 872 >gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus] Length = 692 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L EYL V +H + ER E +R R GK +LV + G Sbjct: 475 LVFVETKKGADMLEEYLATMGYPVTSIHGDRTQREREEALRRFRAGKAPILVATAVAARG 534 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D D E ++ +T + +G A N K Sbjct: 535 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNHK 578 >gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii] gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii] gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii] gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii] Length = 401 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR E L+E + N V MH E+ ER I+++ R Sbjct: 260 DLYDTLTIT-----QAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ GLD+ + LV D S+ I IGR+ R Sbjct: 315 EGQTRVLITTDVWARGLDVQQVSLVINYDLPN-----SRELYIHRIGRSGR 360 >gi|291391627|ref|XP_002712267.1| PREDICTED: interferon induced with helicase C domain 1 [Oryctolagus cuniculus] Length = 1022 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 20/167 (11%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYMH-------SEVKTL---ERIEII 625 ++ R ++ T++ A L++++ E + V+ H SE K + E+ E+I Sbjct: 713 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 772 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R GK ++L+ + EGLDI EC ++ + G + ++ +++Q GR AR S Sbjct: 773 SKFRTGKINLLIATTVAEEGLDIKECNVII-----RYGLVTNEIAMVQARGR-ARADEST 826 Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 IL + + ++ R + ++ N+ P+ + KI+E+ Sbjct: 827 YILVGCSGSGVVERETVNDFREKMMYTAIHRVQNMKPEEYEHKILEL 873 >gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500] Length = 922 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER I+ + GK DVL+ ++ + Sbjct: 461 VLIFCENKKDVDDIYEYLLLKQVEAVSLHGDKTQEERDIAIKMFKEGKKDVLIATDVASK 520 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704 GLD P+ V D KE + I IGR R V +I Y T+ + I E Sbjct: 521 GLDFPDIQHVINFDMPKE-----IENYIHRIGRTGRCVC--IICY--TMRMIPREHIQED 571 Query: 705 TRRREKQ 711 ++R ++Q Sbjct: 572 SKRHQQQ 578 >gi|262282056|ref|ZP_06059825.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA] gi|262262510|gb|EEY81207.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA] Length = 671 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+L Y + + RV +H ++K+ E+ I++ + + D+LV ++ G+++P + Sbjct: 484 LEEELQAY-FGVDARVSLLHGKMKSDEKEAIMQAFKNKEVDILVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S IL A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTES 582 >gi|145506835|ref|XP_001439378.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406562|emb|CAK71981.1| unnamed protein product [Paramecium tetraurelia] Length = 442 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 LL K++ EY L ++ RY+H ++K ER I+ D + G + L+ NL Sbjct: 308 LLIFCQKKIDTQKLEYRLSLHGLKARYLHGDLKQAERDYIMEDFKTGAINCLITTNLASR 367 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDI + +V D F + I IGR R Sbjct: 368 GLDISDVDVVINYD-----FPDNIEDYIHRIGRTGR 398 >gi|226823309|ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus] gi|74151289|dbj|BAE38776.1| unnamed protein product [Mus musculus] Length = 364 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus scrofa] Length = 801 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 483 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 542 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 543 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 596 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 597 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 623 >gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii] gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii] Length = 506 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 IL+ V TKR A+ L ++L + I +H + +ER +R R G +LV ++ Sbjct: 316 ILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPILVATDVAAR 375 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDIP + +++ D + I GRA ++ Sbjct: 376 GLDIPH--VAHVINYDLPSDIDDYVHRIGRTGRAGKS 410 >gi|311742949|ref|ZP_07716757.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272] gi|311313629|gb|EFQ83538.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272] Length = 705 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ ++H + E+ ++R G DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 521 GLRLGFLHGRLPADEKDAVMRAFAAGDVDVLVATTVIEVGVDVPNATVMVVMDADRFGM- 579 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADT 692 + L Q GR R + L T Sbjct: 580 ---SQLHQLRGRVGRGQEPGLCLLVTT 603 >gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] Length = 587 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK+ EDL E L R ++ ++ +R I L+ G D+LV ++ Sbjct: 253 MIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 312 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + +L+ + + AI+ Sbjct: 313 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGR--AGEALLFVAPRERHLLKAIE 366 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 + TR+ +++ ++N Q V + Sbjct: 367 KATRQPLAEMQLPSVDDVNAQRVSK 391 >gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia guttata] Length = 842 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + ++ V TKR +DLT + +H + ER ++ + R GK +L+ ++ Sbjct: 527 KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVAS 586 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 GLD+ + V D + S + IGR AR+ N K Y +++ A Sbjct: 587 RGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGNLKQA--- 637 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 R K LE Q++ K+M+++D Sbjct: 638 --RELIKVLEEAN------QAINPKLMQLVD 660 >gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana) tropicalis] gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana) tropicalis] gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis] Length = 647 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TK+ A+ + YL + + +H + + +R E IRD R GK V+V + Sbjct: 475 RTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCTAVAA 534 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDI V D KE + IGR R N Sbjct: 535 RGLDIENVQHVINYDVPKE-----IDEYVHRIGRTGRCGN 569 >gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC 33323] gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC 33323] Length = 1165 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 60/309 (19%), Positives = 126/309 (40%), Gaps = 27/309 (8%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 +EK LL GV + + +++ QRP I++ ++ A L E N P V F Sbjct: 22 KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286 P T T + +++++ ++ + R +V++ + Y + Sbjct: 81 -------PVDATIATQTAVASPDELSQRLQTLKFLTEK----RAGIVVITPQALQYKLSD 129 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 + + K + EL + + Y+R++I G F GD ++++P E+ Sbjct: 130 PRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN- 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ FG++++ + EF T + + + + I V L+ A++ IK+++ Sbjct: 189 PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNES 248 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + E ++ +++LE G ENY+ + P L +Y+ Sbjct: 249 IANEEN---------VKNHFVKAIDLLEADGLP---ENYAFLIDYLLP--KSFNLVDYLD 294 Query: 467 EDSLLFVDE 475 ++ LL D+ Sbjct: 295 KNGLLLFDD 303 >gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus] Length = 681 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 500 RTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDFRTGKCPVLVATSVAA 559 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDI V D K S + IGR R N+ Sbjct: 560 RGLDIEHVQHVVNFDLPK-----SIEEYVHRIGRTGRCGNT 595 >gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi 4047] gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi 4047] Length = 538 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|212639618|ref|YP_002316138.1| primosome assembly protein PriA [Anoxybacillus flavithermus WK1] gi|212561098|gb|ACJ34153.1| Primosomal protein N' (replication factor Y) - superfamily II helicase [Anoxybacillus flavithermus WK1] Length = 804 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 20/147 (13%) Query: 591 TKRMAEDLTEYL-YERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREG 645 T+++ E+LT+ L + R IR+ +V T R ++ + GK D+L+G ++ +G Sbjct: 564 TQKVEEELTKLLPHARVIRM-----DVDTTSRKGAHERLLNEFGDGKADILLGTQMIAKG 618 Query: 646 LDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR-NVNSKVILYADTITK-S 696 LD P LV +L AD + ++ L Q GRA R ++ +V++ T S Sbjct: 619 LDFPNVTLVGVLAADTMLHIPDFRAAEKTFQLLTQVSGRAGRHHLPGEVVIQTYTPEHYS 678 Query: 697 IQLAIDETTRR-REKQLEHNKKHNINP 722 IQLA D E+++ + KKH P Sbjct: 679 IQLAADHHFEAFYEREMMNRKKHGYPP 705 >gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49] gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49] gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1] gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG] Length = 395 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK E L + + E N V MH ++ ER EI+R R Sbjct: 254 DLYDTLTIT-----QAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ GLD+ + LV D S+ I IGR+ R Sbjct: 309 GGQSRVLIATDVWGRGLDVQQVSLVINYDLPN-----SRELYIHRIGRSGR 354 >gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] Length = 551 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 4/131 (3%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A++ +L+ V TK+ +L E L R +R ++ ++ +R + ++ L+ +FD+L Sbjct: 241 LEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLL 300 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + +++ GLD+P + +++ D G + I GRA R ++ IL+ + Sbjct: 301 IATDVVARGLDVPR--ITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDA--ILFVARREQH 356 Query: 697 IQLAIDETTRR 707 + I+ TR+ Sbjct: 357 VLRQIERITRQ 367 >gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis] Length = 678 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TK+ A+ + YL + + +H + + +R E IRD R GK V+V + Sbjct: 506 RTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCTAVAA 565 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDI V D KE + IGR R N Sbjct: 566 RGLDIENVQHVINYDVPKE-----IDEYVHRIGRTGRCGN 600 >gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae] gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16] Length = 402 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+Y+ +N+ + ++ T+R + LTE + + V +H ++ ER I+R+ R Sbjct: 261 DLYNVVNVT-----QAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++L G+D+ + LV D ++ + I IGR+ R Sbjct: 316 SGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 361 >gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Pichia angusta DL-1] Length = 396 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ + L+E L + N V MH +++ ER ++ + R Sbjct: 255 DLYDSLTIT-----QAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFR 309 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 LG VL+ ++ G+D+ + LV D DKE + + IGR+ R Sbjct: 310 LGNSRVLISTDIWARGIDVQQVSLVINYDLPYDKENY-------VHRIGRSGR 355 >gi|289662159|ref|ZP_06483740.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 717 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063] gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333] gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063] gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333] Length = 525 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +GL I+ T TKR + L++ L ER +H ++ R +R R GK DVLV Sbjct: 274 ARNRGLTIIFT-RTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVDVLV 332 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 ++ G+D+ + V + ++ + I IGR AR N Sbjct: 333 ATDVAARGIDVDDVTHVINYECPED-----DKTYIHRIGRTARAGN 373 >gi|126326479|ref|XP_001374256.1| PREDICTED: similar to melanoma differentiation associated protein-5 [Monodelphis domestica] Length = 1023 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 SE K + E+ E+I + R GK ++L+ + EGLDI EC +V + + ++ + Sbjct: 756 SEFKAMTQNEQKEVINNFRTGKINLLIATTVAEEGLDIKECNIVI-----RYSLVTNEIA 810 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH--NKKHNINPQSVKEK 728 ++Q GRA + ++ V++ +D S + + REK + + N+ P+ +K Sbjct: 811 MLQARGRARADESTYVLVASDG---SGVVERENVNLYREKMMHKAIERVQNMKPEEYAQK 867 Query: 729 IMEVIDPILLEDAATTNISIDAQ 751 I + L+E T S+ Q Sbjct: 868 IWGLQKQSLMEKKMKTRKSLAKQ 890 >gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus clavatus NRRL 1] gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus clavatus NRRL 1] Length = 399 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357 >gi|154249193|ref|YP_001410018.1| type III restriction protein res subunit [Fervidobacterium nodosum Rt17-B1] gi|154153129|gb|ABS60361.1| type III restriction protein res subunit [Fervidobacterium nodosum Rt17-B1] Length = 696 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 E L + I E+ ERIEI++D G LV + +L EG+D+PE + I+ + Sbjct: 562 EILKSKKIYAVKFTQELSNKERIEILKDFGEGYIQALVAMKILDEGVDVPESKIAVIMSS 621 Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYA-DTITK 695 + IQ IGR R ++K Y D ITK Sbjct: 622 S-----TNPREFIQRIGRVLRISDNKGYSYVYDIITK 653 >gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster] gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster] gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster] gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct] Length = 945 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 I + G +I++ V TK ED+ + + +H + ER +++D R GK + Sbjct: 484 IKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSN 543 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +L+ ++ GLD+ + V D + S + + IGR R Sbjct: 544 ILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 584 >gi|51244372|ref|YP_064256.1| helicase [Desulfotalea psychrophila LSv54] gi|50875409|emb|CAG35249.1| related to predicted helicase [Desulfotalea psychrophila LSv54] Length = 1053 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 + A+ + + + I + + E ER E +R R GK L +++L EG+DIPE Sbjct: 578 KHAQYMADNFNKAGIVSKTLLGETPREERAESLRAFRAGKIHFLFTVDVLSEGVDIPEIN 637 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 LV L + S T +Q +GR R+ +K L Sbjct: 638 LVLFLRPTE-----SVTVFLQQLGRGLRHAPNKDCL 668 >gi|115447485|ref|NP_001047522.1| Os02g0636300 [Oryza sativa Japonica Group] gi|75323584|sp|Q6H874|RH47A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47A gi|49387967|dbj|BAD25075.1| DEAD/DEAH box helicase-like [Oryza sativa Japonica Group] gi|113537053|dbj|BAF09436.1| Os02g0636300 [Oryza sativa Japonica Group] gi|215713571|dbj|BAG94708.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623309|gb|EEE57441.1| hypothetical protein OsJ_07650 [Oryza sativa Japonica Group] Length = 573 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 +D+ L R ++ +H ++ L R +++ + G+F VLV L GLD+PEC LV Sbjct: 445 KDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVI 504 Query: 656 ILD 658 LD Sbjct: 505 NLD 507 >gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51] gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51] Length = 394 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359 >gi|309799277|ref|ZP_07693525.1| transcription-repair coupling factor [Streptococcus infantis SK1302] gi|308117122|gb|EFO54550.1| transcription-repair coupling factor [Streptococcus infantis SK1302] Length = 570 Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 13/193 (6%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QLLLG++GS K+ +A + Q +VM A +L ++ + + V Y Sbjct: 30 QLLLGLSGSAKSLAIASSAKN-QDKILVMTSTYGEAERLVNDLISILGSDMV------YP 82 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290 + ++ P + + + I +++ +R S + +V + + + + + Sbjct: 83 FLVDDS--PMVEFLVSSQDKIFSRVEALRFLRDES---QKGILVCNLAASRLFLPDPQVF 137 Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350 I++L+IG EQ EL + L+ YK+ +G F + GD ++IF + + R+ Sbjct: 138 DNSILKLEIGQECEQSELKNQLISLGYKKVTQVQSQGEFSLRGDILDIFETS-QLYPNRI 196 Query: 351 SMFGNDIEEISEF 363 FG++I+ I EF Sbjct: 197 EFFGDEIDGIREF 209 >gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115] gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti VCD115] Length = 1041 Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 R+A LY RN+ R+ H + E EI+ G FDVL+ ++ GLDI Sbjct: 724 RIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETGLDI 783 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ 698 PE + I AD+ G L Q GR R + + Y +T++ Q Sbjct: 784 PEANTILIERADRLGL----AQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQ 831 >gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-] gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName: Full=p68-like protein gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe] gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe] Length = 550 Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ TKR+A+D+T +L + +H + ER ++ + R GK ++V ++ Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 G+D+ G+ + + D G I GRA + +D ++ +L Sbjct: 431 RGIDVK--GITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAREL 484 >gi|116193555|ref|XP_001222590.1| hypothetical protein CHGG_06495 [Chaetomium globosum CBS 148.51] gi|88182408|gb|EAQ89876.1| hypothetical protein CHGG_06495 [Chaetomium globosum CBS 148.51] Length = 602 Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V +KR AE++ ++L+ + MH + LER +R R GK+ +L+ + Sbjct: 363 RTIIFVNSKRAAEEVDDFLFNLGMPCTSMHGDRNQLEREAAMRGFRGGKWPILIATGVTA 422 Query: 644 EGLDI 648 G+D+ Sbjct: 423 RGIDV 427 >gi|70986940|ref|XP_748956.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293] gi|66846586|gb|EAL86918.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293] gi|159123274|gb|EDP48394.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163] Length = 690 Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655 LTE I RY+ ++ R+E +R R G++ VL+ L EG DIP +C L+A Sbjct: 319 LTETFRNYGIDARYITAKTPKDVRMEQLRAFRNGEYPVLLNCGLFTEGTDIPNIDCVLLA 378 Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680 RS+ LIQ IGR R Sbjct: 379 -------RPTRSRNLLIQMIGRGLR 396 >gi|322391161|ref|ZP_08064633.1| competence protein FA [Streptococcus peroris ATCC 700780] gi|321145914|gb|EFX41303.1| competence protein FA [Streptococcus peroris ATCC 700780] Length = 432 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 + G +L+ + E L E L E+ + + T +R+E ++ R K +L+ Sbjct: 299 KTGYPLLVFASEIKKGEKLKEILQEQFPKEKIGFVSSVTEDRLEQVQAFRDRKLTILIST 358 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKS 696 +L G+ P C V +++A+ F +K+SLIQ GR R+++ +I + D + S Sbjct: 359 TILERGVTFP-CVDVCVVEANHRLF--TKSSLIQIGGRVGRSIDRPTGDLIFFHDGLNGS 415 Query: 697 IQLAIDE 703 I+ AI E Sbjct: 416 IKKAIKE 422 >gi|269926755|ref|YP_003323378.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC BAA-798] gi|269790415|gb|ACZ42556.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC BAA-798] Length = 786 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L +Y++ ++R+ +H +K E+ E++ RLG+ VLV ++ G+D+P ++ Sbjct: 600 ERLQKYVFP-DLRLGLLHGRMKPREKDEVMERFRLGELQVLVSTAVVEVGIDVPNATVML 658 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692 I AD+ G L Q GR R S +L +D+ Sbjct: 659 IEGADRFGL----AQLHQFRGRVGRGTEKSYCLLLSDS 692 >gi|254524540|ref|ZP_05136595.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas sp. SKA14] gi|219722131|gb|EED40656.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas sp. SKA14] Length = 829 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%) Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605 +++P + +R SAR+Q + +A + GL+ L+ T+ M E LT+YL + + Sbjct: 284 VINPDLGLRASARSQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRK 340 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 R+R ER E R +R G D +V + L G+DI +V + G+ Sbjct: 341 PPRIRAYRGGYLPTERRETERAMRAGNIDGIVSTSALELGVDIGSLDVVIL-----NGYP 395 Query: 666 RSKTSLIQTIGRAAR 680 S + Q GRA R Sbjct: 396 GSVAATWQRFGRAGR 410 >gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum] gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum] Length = 627 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L +L E+NI+ +H + ER + + D + G VLV + Sbjct: 459 RTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAA 518 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDI + V D K S + IGR R N Sbjct: 519 RGLDIKDVQHVINYDLPK-----SIDEYVHRIGRTGRVGN 553 >gi|116252136|ref|YP_767974.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. viciae 3841] gi|115256784|emb|CAK07874.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 701 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 150 SGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAPNKI 204 +G Q AIA++LK + E+ ++LL G GSGKT MA VIE+ + A++MAP +I Sbjct: 275 TGSQNEAIAEVLKDMAGNERMLRLLQGDVGSGKTLVALMAMAAVIESGGQ-AVLMAPTEI 333 Query: 205 LAAQLYSEFKNF 216 LA Q ++ F Sbjct: 334 LARQHHATISKF 345 >gi|327404711|ref|YP_004345549.1| primosomal protein N' [Fluviicola taffensis DSM 16823] gi|327320219|gb|AEA44711.1| primosomal protein N' [Fluviicola taffensis DSM 16823] Length = 827 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 +L T+++ +DL+ L + I + + +E+I+ + DVL+G ++ +G Sbjct: 584 MLGFGTEKVEDDLSLILPDVRIGRMDLETTRNKNGHLELIQAFENREIDVLIGTQMVAKG 643 Query: 646 LDIPECGLVAILDADK-------EGFLRSKTSLIQTIGRAA-RNVNSKVILYAD-----T 692 LD GLV ILDAD F R+ + Q GR+ RN KVI+ Sbjct: 644 LDFDHVGLVGILDADLMLNKTDFRAFERAFQLMTQVAGRSGRRNKRGKVIIQTGNPDHWV 703 Query: 693 ITKSIQ-----LAIDETTRRR 708 I K I+ AI+E RR Sbjct: 704 IQKVIEHDYDSFAINEIVERR 724 >gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] Length = 666 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ TK+ E+L E L R ++ +V R +++ L+ G+ D+LV ++ Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R+ ++ IL+ + + AI+ Sbjct: 309 GLDVERISHVVNYDIPTDTESYVHR----IGRTGRAGRSGDA--ILFVTPRERHLLRAIE 362 Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPILLED 740 TR+ Q++ +N + E+I E + LED Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLED 403 >gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 686 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L + +H + ER + + R G+ +LV + G Sbjct: 458 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRTGRCPILVATAVAARG 517 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 518 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 553 >gi|22330935|ref|NP_187583.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana] gi|75328099|sp|Q84TG1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57 gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis thaliana] gi|110742885|dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana] gi|332641282|gb|AEE74803.1| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana] Length = 541 Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V +K A++L + L NIR +HS++ ER + R G+ VL+ +++ Sbjct: 383 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 442 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S ++ I IGR+ R Sbjct: 443 GMDFK--GINCVINYD---FPDSASAYIHRIGRSGR 473 >gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum Liverpool] Length = 395 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK E L + + E N V MH ++ ER EI+R R Sbjct: 254 DLYDTLTIT-----QAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ GLD+ + LV D S+ I IGR+ R Sbjct: 309 GGQSRVLIATDVWGRGLDVQQVSLVINYDLPN-----SRELYIHRIGRSGR 354 >gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 525 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +GL I+ T TKR + L++ L ER +H ++ R +R R GK DVLV Sbjct: 274 ARNRGLTIIFT-RTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVDVLV 332 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 ++ G+D+ + V + ++ + I IGR AR N Sbjct: 333 ATDVAARGIDVDDVTHVINYECPED-----DKTYIHRIGRTARAGN 373 >gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae 7-10-1-b] Length = 530 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RI++ TK ED E L + R +HS+ R + + R GK +LV ++L Sbjct: 245 RIIVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVATDVLA 304 Query: 644 EGLDIPECGLVAILD 658 G+D+P+ V D Sbjct: 305 RGIDVPDVDHVINFD 319 >gi|282865077|ref|ZP_06274130.1| type III restriction protein res subunit [Streptomyces sp. ACTE] gi|282560000|gb|EFB65549.1| type III restriction protein res subunit [Streptomyces sp. ACTE] Length = 1046 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623 AR V+ V D++ + + +R L ++ A + ++ + + E ER Sbjct: 544 ARLVVQAVKDKV--SDPRIMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPRHERKS 601 Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + DLR G V+ ++L EGLD+P+ + +L S T +Q +GR R Sbjct: 602 ALDDLRAGTVQVIFSVDLFNEGLDVPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTQ 656 Query: 684 SKVIL 688 K +L Sbjct: 657 GKAVL 661 >gi|255717290|ref|XP_002554926.1| KLTH0F17050p [Lachancea thermotolerans] gi|238936309|emb|CAR24489.1| KLTH0F17050p [Lachancea thermotolerans] Length = 478 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L + +V +H +++ ER +I D R G+ VL+ N+L G Sbjct: 330 IIFVQTKQTANVLYAKLKQAGHQVSILHGDLQASERDRLIDDFREGRSKVLITTNVLARG 389 Query: 646 LDIPECGLVAILDADKEGFLRSK---TSLIQTIGRAAR 680 +DIP +V ++ D + K ++ I IGR R Sbjct: 390 IDIPTVSMV--VNYDLPTTFQGKADPSTYIHRIGRTGR 425 >gi|126309196|ref|XP_001369799.1| PREDICTED: similar to eukaryotic initiation factor 4AI [Monodelphis domestica] Length = 460 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 335 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 394 Query: 651 CGLV 654 LV Sbjct: 395 VSLV 398 >gi|154175477|ref|YP_001407964.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92] gi|112803336|gb|EAU00680.1| molybdenum-pterin binding protein [Campylobacter curvus 525.92] Length = 604 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 147 YHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKI 204 + P+ DQ AI + + H K ++++G GSGKT +A + A++MAP I Sbjct: 226 FAPTNDQLNAINDIRTDLAHGEAKRRVVMGDVGSGKTLVILAAALSVYPGCAVLMAPTSI 285 Query: 205 LAAQLYSEFKNFFP 218 L Q+Y+E K P Sbjct: 286 LCEQIYNEAKRLLP 299 >gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum] Length = 407 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L++L +V TKR + LTE + N V MH ++ ER I+ + R G VL+ ++ Sbjct: 274 LKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVW 333 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + LV D ++ I IGR+ R Sbjct: 334 ARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366 >gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana] Length = 545 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V +K A++L + L NIR +HS++ ER + R G+ VL+ +++ Sbjct: 387 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 446 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S ++ I IGR+ R Sbjct: 447 GMDFK--GINCVINYD---FPDSASAYIHRIGRSGR 477 >gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta] Length = 1201 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + ++ V TKR +D+T+ + + +H + ER ++++ R GK +LV ++ Sbjct: 361 KTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGKAPILVATDVAA 420 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703 GLD+ + V D F S I IGR R + YA T +++ A D Sbjct: 421 RGLDVDDVKYVINFD-----FPSSSEDYIHRIGRTGRKRQTGT-AYAFFTTHNMKHAGDL 474 Query: 704 TTRRREKQLEHNKKHNINPQ 723 RE N+NP+ Sbjct: 475 IEVLRE------AGQNVNPR 488 >gi|319637789|ref|ZP_07992555.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102] gi|317400944|gb|EFV81599.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102] Length = 729 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 L T+ +A+ L L E NI + +H +K E+ E++ +G+ +VLV ++ G+ Sbjct: 537 LQTATETLAQ-LQAALPELNIGL--VHGRMKAAEKAEVMAQFAVGRLNVLVATTVIEVGV 593 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 D+P L+ I A++ G L Q GR R V+L+A+ +++ Sbjct: 594 DVPNAALMVIEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 640 >gi|304385371|ref|ZP_07367716.1| helicase [Pediococcus acidilactici DSM 20284] gi|304328578|gb|EFL95799.1| helicase [Pediococcus acidilactici DSM 20284] Length = 948 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 9/136 (6%) Query: 554 LVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRV 609 L+D +R A+ +++ V ++I+ G R+ + R AE ++ + + + Sbjct: 410 LIDEKTPLRHLLAQERMDYVAEQIDYYGHDGERVYGLIFCSRQAEAVEVAQIMTAKGHPT 469 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 R + ER +IIR G+ + LV +++ EG+DIP+ V +L + S Sbjct: 470 RALTGNTSVSEREKIIRRFEKGELEYLVTVDIFNEGVDIPKVNQVIMLRNTE-----SSI 524 Query: 670 SLIQTIGRAARNVNSK 685 IQ +GR R K Sbjct: 525 IFIQQLGRGLRKAPEK 540 >gi|190572200|ref|YP_001970045.1| putative helicase [Stenotrophomonas maltophilia K279a] gi|190010122|emb|CAQ43730.1| putative helicase [Stenotrophomonas maltophilia K279a] Length = 829 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%) Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605 +++P + +R SAR+Q + +A + GL+ L+ T+ M E LT+YL + + Sbjct: 284 VINPDLGLRASARSQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRK 340 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 R+R ER E R +R G D +V + L G+DI +V + G+ Sbjct: 341 PPRIRAYRGGYLPTERRETERAMRAGNIDGIVSTSALELGVDIGSLDVVIL-----NGYP 395 Query: 666 RSKTSLIQTIGRAAR 680 S + Q GRA R Sbjct: 396 GSVAATWQRFGRAGR 410 >gi|170730951|ref|YP_001776384.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M12] gi|167965744|gb|ACA12754.1| ATP-dependent DNA helicase [Xylella fastidiosa M12] Length = 718 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ +R + + DVLV ++ G+D+P L+ I +A++ G Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKYNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R V+S V+LY Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623 >gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL YB-4239] gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL YB-4239] Length = 399 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD NL Q + + TK LT+ + ++N V MH ++K ER I+ D R Sbjct: 258 DLYD--NLTITQAV---IFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + I IGR+ R Sbjct: 313 SGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENY-------IHRIGRSGR 358 >gi|325927901|ref|ZP_08189125.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118] gi|325541741|gb|EGD13259.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118] Length = 717 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|325680276|ref|ZP_08159836.1| primosomal protein N' [Ruminococcus albus 8] gi|324107985|gb|EGC02241.1| primosomal protein N' [Ruminococcus albus 8] Length = 817 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 25 LDYFSFEEKQLEVDKTMVADA-------MRRIRSEAGKHRKNAAKRMLIHQRENTASKGE 77 +D+ E Q E+DK + A + + + + KR + + A+ E Sbjct: 141 IDFLEITEDQQEIDKFLDIKAFPERKKPLDMLIDKGFVEETQSFKRKVGDESVKMAALAE 200 Query: 78 FQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS---INNH 134 + ++ +K+ E+ E+ SV+ L + ++K R + + + Sbjct: 201 GYEDAELTPKQKKVVELLEECGAASVKELCYMTGCTATIIKRLCDKNAVRVFEQEVMRDT 260 Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEA-- 191 +IT + D + +Q AA ++ I + + LL GVTGSGKT KVI+A Sbjct: 261 LGEITERESPDDITLNEEQTAAFDGIMALIRAGKPAGALLYGVTGSGKTSVFIKVIDAVL 320 Query: 192 -MQRPAIVMAPNKILAAQLYSEFKNFF 217 M R A+++ P L Q+ + FK F Sbjct: 321 KMGRTAMMLVPEISLTPQMVARFKVLF 347 >gi|253575858|ref|ZP_04853192.1| helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844652|gb|EES72666.1| helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 387 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 Q+G +I + V R TE L + + +R E + R G+ +LV Sbjct: 244 QRGAQIFIFVTRIRQIAAFTELLRTYFPGLPIEGTSSIDPDRSEKVLAFREGRIRMLVTT 303 Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILYADTITKS 696 +L G+ +P+ V I+DAD + F + SL+Q GRA R + N KV+ A TKS Sbjct: 304 TILERGVTVPKSD-VYIVDADSDLF--DEASLVQMAGRAGRSKDDPNGKVVFAAPAWTKS 360 Query: 697 IQLAIDE 703 + AI + Sbjct: 361 QRDAIRQ 367 >gi|228472537|ref|ZP_04057297.1| primosomal protein N` [Capnocytophaga gingivalis ATCC 33624] gi|228275950|gb|EEK14706.1| primosomal protein N` [Capnocytophaga gingivalis ATCC 33624] Length = 818 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+++ E+L ++ + I M + +II G+ D+LVG ++ +GLD P+ Sbjct: 579 TEKVEEELLQFFPKARIERMDMDTTKGKYGFEKIIHHFERGETDILVGTQMVSKGLDFPK 638 Query: 651 CGLVAILDADKEGFL---------RSKTSLIQTIGRAARNVNSKVIL 688 GLV +++AD FL R+ L GRA R +V++ Sbjct: 639 VGLVGVMNADL--FLHQPDFRASERAFQLLSHIAGRAGRKEQGRVLI 683 >gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 538 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624] gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624] Length = 399 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357 >gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K] Length = 530 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ + G+ DVLV ++ GLDI Sbjct: 248 TKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 G+ + + D + S + IGR R S V Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGKSGV 338 >gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus] Length = 1475 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 49 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 101 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 102 YRSYVQSKGRARAPISNYVML-ADT 125 >gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio] Length = 700 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A R ++ V TKR A+ + +L + I +H + + ER + + D RLG VL Sbjct: 508 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVL 567 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 V ++ GLDI + V D S + IGR R N+ Sbjct: 568 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 610 >gi|332523769|ref|ZP_08400021.1| helicase C-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332315033|gb|EGJ28018.1| helicase C-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 455 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 2/54 (3%) Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 ++I + +H++ KT ER +I++D R GK V+ ++L+ EG D+P+C + + Sbjct: 210 QSIGINAIHADAKTPKAERDKIMQDFRDGKIQVVCNVDLISEGFDVPDCAVTIL 263 >gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 546 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 249 TKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 307 SGVTHVINFD---LPQDPESYVHRIGRTGR 333 >gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1] gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1] Length = 1247 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 2/151 (1%) Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289 Y P Y P DT + S I + R + L+ + CI++++V+ + + + + Sbjct: 74 YNIPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDD 133 Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++ + L +GD ++ L +L Y + +GT V G +++F + R Sbjct: 134 LKKLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNN-PIR 192 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 + +F ++IE I F G+ ++VE I IY Sbjct: 193 IELFDDEIESIRLFNIEDGRSFKSVENIIIY 223 >gi|171688604|ref|XP_001909242.1| hypothetical protein [Podospora anserina S mat+] gi|170944264|emb|CAP70374.1| unnamed protein product [Podospora anserina S mat+] Length = 678 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTE I RY+ + ER E + + +F VL+ + EG DIP V + Sbjct: 312 LTERFRHHGIDARYVFGDTPAKERAETLEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLA 371 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 RS+ LIQ IGR R K + + S+ + I Sbjct: 372 RP-----TRSRNLLIQMIGRGMRLHEGKENCHVIDMVASLDVGI 410 >gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio] Length = 715 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A R ++ V TKR A+ + +L + I +H + + ER + + D RLG VL Sbjct: 523 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVL 582 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 V ++ GLDI + V D S + IGR R N+ Sbjct: 583 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 625 >gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 418 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 9/106 (8%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 Q+ R+++ +K +++T+ L + V MHS+++ +R EI+ + R G+ ++LV Sbjct: 242 QEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRINMLVAT 301 Query: 640 NLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVN 683 +++ G+DI + LV D D E + + IGR AR N Sbjct: 302 DIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANN 340 >gi|121634295|ref|YP_974540.1| putative DNA helicase [Neisseria meningitidis FAM18] gi|120866001|emb|CAM09738.1| putative DNA helicase [Neisseria meningitidis FAM18] gi|325131701|gb|EGC54406.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M6190] gi|325137717|gb|EGC60294.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis ES14902] Length = 680 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ G+ +VLV ++ G+D+P L+ Sbjct: 496 EQLQTALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 553 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591 >gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1] gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1] gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1] gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase [Halobacterium salinarum R1] Length = 784 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 16/145 (11%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDL 628 L + G R+++ ++ AE LT +L E R++ + E+ E + + Sbjct: 364 TLGIEDGDRVIVFTESRDTAEALTAFLGEHFDTRRFVGQGDADGSDGMTQTEQRETLAEF 423 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687 R G F+VLV ++ EGLD+PE LV + + + +Q GR R + V+ Sbjct: 424 RNGDFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSVQRKGRTGRQTAGRVVV 478 Query: 688 LYADTITKSIQLAIDETTRRREKQL 712 L A+ I +RRRE+++ Sbjct: 479 LLAEDTRDEAYFWI---SRRREQEM 500 >gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 539 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|312863296|ref|ZP_07723534.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396] gi|311100832|gb|EFQ59037.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396] Length = 676 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LT++ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 489 LHQELTDF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 547 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 548 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 599 >gi|270292353|ref|ZP_06198564.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143] gi|270278332|gb|EFA24178.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143] Length = 671 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|237833949|ref|XP_002366272.1| RNA helicase, putative [Toxoplasma gondii ME49] gi|211963936|gb|EEA99131.1| RNA helicase, putative [Toxoplasma gondii ME49] Length = 1214 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P E R+ V E+ +A + + ++ V T++ E L ++ + ++ RV +H+ ++ Sbjct: 685 PEEGRAREEMHPRVASELLVAEEDTHKCIVFVETQQEVEQLAQHPFLQSWRVAPLHAGLE 744 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677 +R + R G+ VL+ +++ GLD+P LV L + ++ I GR Sbjct: 745 QEQRDTNLSRFRSGEAPVLIATDVVARGLDVPAVTLVVHLHPPV-----NPSTYIHRSGR 799 Query: 678 AAR--NVNSKVILYADT 692 A R +V V+LY+ + Sbjct: 800 AGRGGHVGDSVVLYSSS 816 >gi|199597141|ref|ZP_03210573.1| RecG-like helicase [Lactobacillus rhamnosus HN001] gi|258508655|ref|YP_003171406.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG] gi|199591945|gb|EDZ00020.1| RecG-like helicase [Lactobacillus rhamnosus HN001] gi|257148582|emb|CAR87555.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG] gi|259649961|dbj|BAI42123.1| DNA helicase RecG [Lactobacillus rhamnosus GG] Length = 679 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V +H ++K E+ +I+R G VLV ++ G+D+P ++AI DAD+ G Sbjct: 501 QVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL--- 557 Query: 668 KTSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R ++ +L AD Sbjct: 558 -SQLHQLRGRVGRGSKAAQCLLIAD 581 >gi|253700922|ref|YP_003022111.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21] gi|251775772|gb|ACT18353.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21] Length = 772 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 14/121 (11%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 +MAE L + ++ ++RV +H + E+ ++++ + G D+LV ++ G+D+P Sbjct: 576 QMAEHLAQEVFP-DLRVAVLHGRMPAAEKEAVMKEFKAGSTDILVATTVIEVGIDVPNAT 634 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 ++ I A++ G + L Q GR R ++ I LA D+ + +K+L Sbjct: 635 VMVIEHAERFGL----SQLHQLRGRVGRGSER---------SRCILLAGDKLSEDGQKRL 681 Query: 713 E 713 E Sbjct: 682 E 682 >gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980] gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980 UF-70] Length = 399 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENY-------IHRIGRSGR 357 >gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790] gi|109624743|emb|CAJ51150.1| probable nuclease domain protein/ probable ATP-dependent RNA helicase [Haloquadratum walsbyi DSM 16790] Length = 851 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 16/146 (10%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM------HSEVKTL-ERIEIIRDL 628 L + G R+++ ++ AE LTE+L R++ SE T E+ + + Sbjct: 365 TLGIEGGERVIIFTESRDTAEALTEFLSASFDVQRFVGQNDTGRSEGMTQREQQKALTAF 424 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687 R G+F+VL+ ++ EGLD+PE LV + +RS IQ GR R + V+ Sbjct: 425 RSGEFEVLISTSVAEEGLDVPEVDLVLFFEPVPTA-IRS----IQRKGRTGRQTEGRVVV 479 Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713 L A+ I +RRR+K++E Sbjct: 480 LLAEDTRDEAYFWI---SRRRQKKME 502 >gi|323465937|gb|ADX69624.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus helveticus H10] Length = 453 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ TK+ ++LT YL ++ ++V +H V ER +R + G+F +V +L G Sbjct: 248 LVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARG 307 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LDI LV + R +I IGR RN Sbjct: 308 LDIDGVSLVINYE-----IPRDIEFVIHRIGRTGRN 338 >gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 539 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782] gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782] Length = 539 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|294627104|ref|ZP_06705692.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667377|ref|ZP_06732595.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598537|gb|EFF42686.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602818|gb|EFF46251.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 717 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|282917845|ref|ZP_06325595.1| helicase [Staphylococcus aureus subsp. aureus D139] gi|283767575|ref|ZP_06340490.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus H19] gi|282318130|gb|EFB48490.1| helicase [Staphylococcus aureus subsp. aureus D139] gi|283461454|gb|EFC08538.1| type III restriction protein res subunit [Staphylococcus aureus subsp. aureus H19] Length = 953 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 EG+DIPE V +L + + IQ +GR R Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544 >gi|260951197|ref|XP_002619895.1| hypothetical protein CLUG_01054 [Clavispora lusitaniae ATCC 42720] gi|238847467|gb|EEQ36931.1| hypothetical protein CLUG_01054 [Clavispora lusitaniae ATCC 42720] Length = 962 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 ++I+D + G +++LV ++ EGLDI E L+ D+ S +Q +GR RN Sbjct: 512 QLIKDFKKGSYNILVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNVQRMGRTGRNR 566 Query: 683 NSKVIL 688 + KV+L Sbjct: 567 DGKVLL 572 >gi|217034285|ref|ZP_03439702.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10] gi|216943257|gb|EEC22722.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10] Length = 621 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|239917402|ref|YP_002956960.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665] gi|281414113|ref|ZP_06245855.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665] gi|239838609|gb|ACS30406.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665] Length = 730 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ +H + E+ ++ G+ DVLV ++ G+D+P ++A+LDAD G Sbjct: 544 GLRIDAVHGRMDQAEQDAAMQAFARGETDVLVATTVVEVGVDVPNATVMAVLDADDFGL- 602 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R + V L A Sbjct: 603 ---STLHQLRGRVGRGPGAAVCLLA 624 >gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Neosartorya fischeri NRRL 181] gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Neosartorya fischeri NRRL 181] Length = 399 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357 >gi|118442893|ref|YP_878819.1| helicase [Clostridium novyi NT] gi|118133349|gb|ABK60393.1| helicase, putative [Clostridium novyi NT] Length = 834 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 13/118 (11%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKF 633 N + R L +K+ A+ + +Y +R Y SE + +R E I L G+ Sbjct: 444 NYKKYKSTRALGFCTSKQHAKFMADYFNNAGVRACAVYSGSESEEFDRKEAISMLVKGEV 503 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSKVIL 688 VL I++ EGLDIP +V FLR S T +Q +GR R K L Sbjct: 504 QVLFSIDMFNEGLDIPSIDMVM--------FLRPTESPTIFLQQLGRGLRKYQDKKYL 553 >gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe] Length = 550 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ TKR+A+D+T +L + +H + ER ++ + R GK ++V ++ Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699 G+D+ G+ + + D G I GRA + +D ++ +L Sbjct: 431 RGIDVK--GITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAREL 484 >gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7] gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7] Length = 1160 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 60/305 (19%), Positives = 132/305 (43%), Gaps = 36/305 (11%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 ++Q L + G G+ T+A ++ + +++ + A + E +A++ + Sbjct: 17 QMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSAIKVRLFP 76 Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P +++ P D ++ +++ QI + HS +V+ V+ + Sbjct: 77 DRETLPYDSFSPHQDLISQRLETLS-QITQAEHS-----------VVIVPVTTLMMRLPP 124 Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +SY S + LK GD + ++ L Y + G F + G ++IFP+ + ++ Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +++E I F P T + V+ +++ + PT ++A++ ++ + R Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + K E + + Q ++ +L IENY + TLF+Y+P Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFDYLP 282 Query: 467 EDSLL 471 +D+ L Sbjct: 283 KDTQL 287 >gi|309389035|gb|ADO76915.1| ATP-dependent DNA helicase RecG [Halanaerobium praevalens DSM 2228] Length = 685 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 595 AEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 AE+L L + +N ++ +HS V LE+ EI+ R GK D+L+ ++ G+D+ Sbjct: 497 AEELYNNLKTGFFKNNKLALIHSSVPALEKKEIMEKFRAGKIDILIATTVIEVGVDVSNA 556 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680 ++ I +A++ G L Q GR R Sbjct: 557 SIMIIENAERFGL----AQLHQLRGRVGR 581 >gi|298695752|gb|ADI98974.1| helicase, putative [Staphylococcus aureus subsp. aureus ED133] Length = 953 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I LR GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 EG+DIPE V +L + + IQ +GR R Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544 >gi|296923414|emb|CAZ27718.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Oncorhynchus mykiss] Length = 677 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+ + IR+ RLG ++L+ ++ EGLDIPEC LV + G L ++ + Q GRA Sbjct: 420 EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVV-----RYGLLTNEIAQQQASGRA 473 >gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon 078 str. F0262] gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon 078 str. F0262] Length = 1125 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 5/188 (2%) Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295 Y P D + + I R R A L E I+V+++ + I ES+ ++ Sbjct: 74 YYPAKDLLFYQADTQGTLITRQRVEALSHLTEDESGILVTTIDALMDKIWDRESFQGAVL 133 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +L G E L L Y+R G + + G ++I+P E+ R+ +G+ Sbjct: 134 RLAPGQIHELSALSKKLTSLGYQRLPAVEAMGEYSLRGGILDIYPFTAEN-PIRLEFWGD 192 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE---LEK 412 +I+ I F L+ + + ++ +I + R + + Y+ E ++ L E L + Sbjct: 193 EIDNIRSFDLLSQRSVEKLDEAEICPAAERGCGRKGDASLLDYLPEHARIFLDEPARLRE 252 Query: 413 EGRLLEAQ 420 GR++EA+ Sbjct: 253 RGRMVEAE 260 Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 7/100 (7%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV + H ++ + EI+ G+ DVLV ++ GLDIP + I DAD+ G Sbjct: 812 RVAFAHGKMNEGQLEEIMLRFINGEIDVLVSTTIIETGLDIPNANTLIINDADRMGL--- 868 Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + + +L +E+ +R Sbjct: 869 -SQLYQIRGRVGRSSRTA---YAFFLYRRGKLLSEESEKR 904 >gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira pseudonana CCMP1335] gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira pseudonana CCMP1335] Length = 369 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + L E + ER+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 244 TRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLARGIDVQQ 303 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IGR+ R Sbjct: 304 VSLVINFDLPT-----NRENYIHRIGRSGR 328 >gi|195128419|ref|XP_002008661.1| GI13618 [Drosophila mojavensis] gi|193920270|gb|EDW19137.1| GI13618 [Drosophila mojavensis] Length = 595 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 +QGL+ +L+ V +K A+ L E L I V +H+E +R +R R G VL+ Sbjct: 369 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLI 428 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D LV D F SK S I IGR R Sbjct: 429 CTELMGRGIDFKGVNLVINYD-----FPPSKISYIHRIGRTGR 466 >gi|161506980|ref|YP_001576934.1| putative RNA helicase [Lactobacillus helveticus DPC 4571] gi|160347969|gb|ABX26643.1| putative RNA helicase [Lactobacillus helveticus DPC 4571] Length = 453 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL ++ ++V +H V ER +R + G+F +V +L GLDI Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + R +I IGR RN Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338 >gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10] gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10] Length = 399 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++E + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENY-------IHRIGRSGR 357 >gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4] gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4] Length = 1160 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 60/305 (19%), Positives = 132/305 (43%), Gaps = 36/305 (11%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 ++Q L + G G+ T+A ++ + +++ + A + E +A++ + Sbjct: 17 QMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSAIKVRLFP 76 Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287 P +++ P D ++ +++ QI + HS +V+ V+ + Sbjct: 77 DRETLPYDSFSPHQDLISQRLETLS-QITQAEHS-----------VVIVPVTTLMMRLPP 124 Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 +SY S + LK GD + ++ L Y + G F + G ++IFP+ + ++ Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ +F +++E I F P T + V+ +++ + PT ++A++ ++ + R Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + K E + + Q ++ +L IENY + TLF+Y+P Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFDYLP 282 Query: 467 EDSLL 471 +D+ L Sbjct: 283 KDTQL 287 >gi|321250245|ref|XP_003191742.1| translation initiation factor [Cryptococcus gattii WM276] gi|317458209|gb|ADV19955.1| Translation initiation factor, putative [Cryptococcus gattii WM276] Length = 401 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L++R V MH ++K ER I+++ R G VL+ +LL G+D+ + Sbjct: 276 TRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQ 335 Query: 651 CGLVAILD--ADKEGFL 665 LV D + KE ++ Sbjct: 336 VSLVINYDLPSSKENYI 352 >gi|168010592|ref|XP_001757988.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690865|gb|EDQ77230.1| predicted protein [Physcomitrella patens subsp. patens] Length = 463 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 8/173 (4%) Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554 AT+ + R + +RPL + +R V P S + E + + + Sbjct: 242 ATMPQAVLRAAAVWGHRPLLVRAQSIIRVEDFRVE--PSSIDSETKESTVSPDLQGAKES 299 Query: 555 VDPPVE----IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 + P +E + S R V+ + I+ A + +++ + R +D+ L R + Sbjct: 300 LPPNLEHFYVVASLRHHVDILRKSIH--ALEARSVIVFLNHSRRLKDVQFKLEARGLTAG 357 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 +H E+ +ER I+ R GK VLV + GLDIP C LV L+ +G Sbjct: 358 ALHGELSKMERSNILNSFRNGKLRVLVTSEVGARGLDIPTCDLVVNLELPTDG 410 >gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST] gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST] Length = 910 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V TK+ +DL + + +H + ER +++D R GK +LV ++ Sbjct: 477 KIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVAA 536 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + V D + S I IGR R Sbjct: 537 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 568 >gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str. Manfredo] gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str. Manfredo] Length = 539 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|95102876|gb|ABF51379.1| eukaryotic translation initiation factor 4A [Bombyx mori] Length = 420 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++A + ++ T+R + LTE ++ R+ V MH ++ ER I+R R Sbjct: 279 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 333 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + V Sbjct: 334 TGSSRVLITTDLLARGIDVQQVSCV 358 >gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394] gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394] Length = 539 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis carolinensis] Length = 647 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 328 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 387 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 388 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 441 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 442 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 468 >gi|331265918|ref|YP_004325548.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5] gi|326682590|emb|CBZ00207.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5] Length = 671 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str. Zhang] gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str. Zhang] Length = 502 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++R + G+ D LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 332 >gi|260102894|ref|ZP_05753131.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus helveticus DSM 20075] gi|260083296|gb|EEW67416.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus helveticus DSM 20075] Length = 453 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL ++ ++V +H V ER +R + G+F +V +L GLDI Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + R +I IGR RN Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338 >gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia pastoris GS115] gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia pastoris GS115] gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435] Length = 606 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 10/109 (9%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 ++GL ++ V TKRMA+ L+ +L RN +H + ER + + G +LV Sbjct: 398 KEGLTLIF-VETKRMADTLSHFLVTRNFPATSIHGDRTQQEREHALHLFKSGAAPILVAT 456 Query: 640 NLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + GLDIP V D AD + + + IGR R N + Sbjct: 457 AVAARGLDIPNVTHVVNYDLPADIDDY-------VHRIGRTGRAGNVGI 498 >gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334] gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23] gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334] gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23] gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W] gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II] Length = 502 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++R + G+ D LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 332 >gi|310778805|ref|YP_003967138.1| type III restriction protein res subunit [Ilyobacter polytropus DSM 2926] gi|309748128|gb|ADO82790.1| type III restriction protein res subunit [Ilyobacter polytropus DSM 2926] Length = 799 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 19/113 (16%) Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 ++ E+ + R EI+ + GK D+L +++ EG+DIP V FLR TS Sbjct: 458 FIVGEISSKSRTEILDKFKNGKLDLLFVVDVFNEGVDIPSIDTVM--------FLRPTTS 509 Query: 671 ---LIQTIGRAARNVNSKVIL--------YADTITKSIQLAIDETTRRREKQL 712 IQ +GR R SK L Y I K + L+ D +E ++ Sbjct: 510 YTIFIQQLGRGLRTSESKTKLRVLDFVGNYKGAILKPLFLSGDYKPSEKESKI 562 >gi|227534630|ref|ZP_03964679.1| helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187731|gb|EEI67798.1| helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 458 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 I ++ S+ L R E + + GK ++ ++L+ EG D+PECG+V + L Sbjct: 239 GISAIHVDSKTPALNRDEAMTAFKDGKIRIISNVDLISEGFDVPECGVVIM--------L 290 Query: 666 RSKTSLIQTIGRAARNV----NSKVILYADTITKSIQLAIDETTRR-----REKQLEHNK 716 R SL+ I ++ R + N + I+ D + + + +T R R KQ +H Sbjct: 291 RPTASLVLDIQQSMRGMRYRPNKRAII-IDHVANVYRFGLPDTDREWSLEDRPKQEKHRG 349 Query: 717 KHN 719 K + Sbjct: 350 KSD 352 >gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio] gi|2463519|dbj|BAA22535.1| vas [Danio rerio] Length = 716 Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L A R ++ V TKR A+ + +L + I +H + + ER + + D RLG VL Sbjct: 524 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVL 583 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 V ++ GLDI + V D S + IGR R N+ Sbjct: 584 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 626 >gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047] Length = 448 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 21/143 (14%) Query: 554 LVDP-PVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRM-------------AED 597 L DP + + S R Q + + +I LA G R+LL +LT+ A+ Sbjct: 203 LTDPQKLLLNSVRDQHQSIRQQIILADDTGHKERLLLALLTREKYEKALIFTNTRAKADV 262 Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 L E L++ +R +H E++ R ++ LR G LV ++ GLDI LV Sbjct: 263 LGEMLFKSEVRSGVLHGEMEQEHRNRVVERLRTGHISALVASDVAARGLDIKGIDLVINF 322 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 D RS + IGR R Sbjct: 323 D-----MARSGDDYLHRIGRTGR 340 >gi|328462823|gb|EGF34690.1| putative RNA helicase [Lactobacillus helveticus MTCC 5463] Length = 453 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL ++ ++V +H V ER +R + G+F +V +L GLDI Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + R +I IGR RN Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338 >gi|293365912|ref|ZP_06612615.1| DNA helicase RecG [Streptococcus oralis ATCC 35037] gi|307702316|ref|ZP_07639274.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037] gi|291315590|gb|EFE56040.1| DNA helicase RecG [Streptococcus oralis ATCC 35037] gi|307624119|gb|EFO03098.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037] Length = 671 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLIANPKTDS 582 >gi|289668008|ref|ZP_06489083.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 717 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 539 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis 053442] gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis 053442] Length = 1371 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + + PT + A K + + Sbjct: 200 PVSEIRLLSAHEF----PTDSEAQKIFRSRFR 227 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 1062 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1118 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1119 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1154 >gi|78049064|ref|YP_365239.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037494|emb|CAJ25239.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 717 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus] Length = 645 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + L + +H + + +R + + D R GK VLV ++ Sbjct: 461 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 520 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 521 RGLDIPDVQFVVNFD-----LPNNIDEYVHRIGRTGRCGNT 556 >gi|332139566|ref|YP_004425304.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep ecotype'] gi|327549588|gb|AEA96306.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep ecotype'] Length = 690 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 8/112 (7%) Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 VL + AED L +++V +H +K E+ +++ D + GK D+LV ++ G+ Sbjct: 495 VLECQAAEDAAVTLRTALPDLQVGLVHGRLKPAEKAQVMADFKDGKLDLLVATTVIEVGV 554 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSK-VILYADTITKS 696 D+P ++ I + ++ G L Q GR R V S+ V++Y ++K+ Sbjct: 555 DVPNASIMIIENPERLGL----AQLHQLRGRVGRGAVESQCVLMYQSPLSKT 602 >gi|331701287|ref|YP_004398246.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128630|gb|AEB73183.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL B-30929] Length = 453 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 9/159 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ T++ E+LTEYL + ++V +H +K ER +I++ ++ +F +V +L Sbjct: 246 VLIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEFQFVVATDLAAR 305 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAID 702 G+DI V D E I +GR RN + + LY+ K ++ D Sbjct: 306 GIDIEGVSDVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEELED 361 Query: 703 ETTRRREKQLEHNK---KHNINPQSVKEKIMEVIDPILL 738 + K L++ + ++ N + K + +DP ++ Sbjct: 362 MGIHFKPKALKNGEIVDSYDRNRRKTHRKKHDKLDPTMI 400 >gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Meleagris gallopavo] Length = 645 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 322 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 381 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 382 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 435 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 436 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 462 >gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua] Length = 644 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L N+ +H + + ER + + D R GK VLV ++ Sbjct: 462 RTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 521 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDI + V D + + IGR R N+ Sbjct: 522 RGLDIKDVQHVVNFD-----LPNNIDDYVHRIGRTGRCGNT 557 >gi|307709631|ref|ZP_07646083.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564] gi|307619529|gb|EFN98653.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564] Length = 671 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H ++K+ E+ +I+++ + K D+LV ++ G+++P + Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens] Length = 731 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 473 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 526 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 527 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 553 >gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270] gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270] Length = 539 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens] Length = 737 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 415 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 474 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 475 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 528 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 529 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 555 >gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens] gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens] Length = 729 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 473 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 526 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 527 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 553 >gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS] gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232] gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180] gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005] gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429] gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS] gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232] gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180] gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005] gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429] gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] Length = 539 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315] gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1] gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315] gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1] Length = 539 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|332969227|gb|EGK08257.1| DNA/RNA helicase [Desmospora sp. 8437] Length = 788 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ + R A+ L++Y ++ + +H+ K RIE +R LR G+ + + ++L Sbjct: 428 RTLVFCSSVRQAQFLSDYFNQQGNKTVALHAGTKN--RIEAVRALREGRIEAIFTVDLFN 485 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIP + + + S + IQ +GR R K Sbjct: 486 EGVDIPPVDTLLFVRPTE-----SVSVFIQQLGRGLRLAEGK 522 >gi|332251086|ref|XP_003274677.1| PREDICTED: eukaryotic initiation factor 4A-I isoform 1 [Nomascus leucogenys] Length = 410 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 285 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 344 Query: 651 CGLV 654 LV Sbjct: 345 VSLV 348 >gi|291403975|ref|XP_002718260.1| PREDICTED: eukaryotic translation initiation factor 4A-like [Oryctolagus cuniculus] Length = 319 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R++ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 194 TRREVDWLTEKMHARDVTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 253 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IG R Sbjct: 254 VSLVINYDLPT-----NRENYIHRIGHGGR 278 >gi|190575687|ref|YP_001973532.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia K279a] gi|190013609|emb|CAQ47244.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia K279a] Length = 703 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 16/138 (11%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER------NIRVRYMHSEVKTL 619 ++ + I LA Q+G ++ +E+L + YE +RV +H +K Sbjct: 481 ELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAA 540 Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++ + + G D+LV ++ G+D+P L+ I +A++ G L Q GR Sbjct: 541 EKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGL----AQLHQLRGRVG 596 Query: 680 RN--VNSKVILYADTITK 695 R V+ V+LY +++ Sbjct: 597 RGSAVSRCVLLYQAPLSQ 614 >gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus] Length = 1917 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566 >gi|169843536|ref|XP_001828497.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130] gi|116510435|gb|EAU93330.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130] Length = 671 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 37/71 (52%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RIL+ L K+ A + E L + V +H ++ R+E + + + GK +LV ++ Sbjct: 507 RILVFALYKKEASRVEEMLKRQGYTVGALHGDMSQSARMEALDNFKTGKTQLLVATDVAA 566 Query: 644 EGLDIPECGLV 654 GLDIP G V Sbjct: 567 RGLDIPNVGAV 577 >gi|58259399|ref|XP_567112.1| translation initiation factor [Cryptococcus neoformans var. neoformans JEC21] gi|134107479|ref|XP_777624.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var. neoformans B-3501A] gi|74687330|sp|Q5KN60|IF4A_CRYNE RecName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=Translation initiation factor 1 gi|50260318|gb|EAL22977.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223249|gb|AAW41293.1| translation initiation factor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 401 Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L++R V MH ++K ER I+++ R G VL+ +LL G+D+ + Sbjct: 276 TRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQ 335 Query: 651 CGLVAILD--ADKEGFL 665 LV D + KE ++ Sbjct: 336 VSLVINYDLPSSKENYI 352 >gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Thiomonas sp. 3As] Length = 666 Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ TK+ E+L E L R ++ +V R +++ L+ G+ D+LV ++ Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R+ ++ IL+ + + AI+ Sbjct: 309 GLDVERISHVVNYDIPTDTESYVHR----IGRTGRAGRSGDA--ILFVTPRERHLLRAIE 362 Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPILLED 740 TR+ Q++ +N + E+I E + LED Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLED 403 >gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis] gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis] Length = 688 Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635 N +A G +I++ V TK ED+ + + +H + ER +++D R GK ++ Sbjct: 234 NNSANNGSKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNI 293 Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ ++ GLD+ + V D + S + + IGR R Sbjct: 294 LIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 333 >gi|218530998|ref|YP_002421814.1| helicase [Methylobacterium chloromethanicum CM4] gi|218523301|gb|ACK83886.1| helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 545 Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A + + + I + +E ER ++RD R GK LV + +L G ++PE L+ Sbjct: 258 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 317 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707 A+L + L +Q +GRA R K V+ YA + + +D T R Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 367 >gi|153805930|ref|ZP_01958598.1| hypothetical protein BACCAC_00170 [Bacteroides caccae ATCC 43185] gi|149130607|gb|EDM21813.1| hypothetical protein BACCAC_00170 [Bacteroides caccae ATCC 43185] Length = 818 Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +VIL +I I Sbjct: 672 GRAGRKNKRGRVILQTKSIDHPI 694 >gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis M01-240013] gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis M04-240196] Length = 1296 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ + Sbjct: 37 VVLTLDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++ A D + V + + + V + LK G +++ L S LV Sbjct: 93 -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP E + +R+ +F ++I+ I F T + I V Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 987 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1043 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1044 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1079 >gi|296923416|emb|CAZ27720.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Oncorhynchus mykiss] Length = 623 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+ + IR+ RLG ++L+ ++ EGLDIPEC LV + G L ++ + Q GRA Sbjct: 420 EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVV-----RYGLLTNEIAQQQASGRA 473 >gi|254561985|ref|YP_003069080.1| helicase domain-containing protein, DEAD/DEAH motif [Methylobacterium extorquens DM4] gi|254269263|emb|CAX25229.1| putative helicase domain protein, DEAD/DEAH motif [Methylobacterium extorquens DM4] Length = 545 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A + + + I + +E ER ++RD R GK LV + +L G ++PE L+ Sbjct: 258 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 317 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707 A+L + L +Q +GRA R K V+ YA + + +D T R Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 367 >gi|227894658|ref|ZP_04012463.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047] gi|227863553|gb|EEJ70974.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047] Length = 453 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ ++LT YL ++ ++V +H V ER +R + G+F +V +L GLDI Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 LV + R +I IGR RN Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338 >gi|221502205|gb|EEE27943.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG] Length = 1057 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%) Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 A PG+ + +V QI++ V+ P++ + R +E+ N A ++ V Sbjct: 878 AVPGAMNT-AAKNSMVTQIVK---HVEEPLKAAALRADLEEFLSANNSQA------IVFV 927 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 +KR + I+ + ER ++ R+ R G+F VLV ++ GLD P Sbjct: 928 RSKRAIHPTAHTIRLAGIQTEVLTGNRTQPERQQVFRNFRDGRFPVLVATSVAARGLDFP 987 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLV +D +E + I GRA R Sbjct: 988 NVGLVINVDMPQE--MEHYVHRIGRTGRAGR 1016 >gi|149186080|ref|ZP_01864394.1| primosome assembly protein PriA [Erythrobacter sp. SD-21] gi|148830111|gb|EDL48548.1| primosome assembly protein PriA [Erythrobacter sp. SD-21] Length = 725 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 +R+A+++ E L E + V + E I + G+ DV+VG L+ +G PE Sbjct: 490 VERIADEVAERLPEARVFVATSDTLNSPGRAAEFIASVDAGEIDVIVGTQLVTKGFHFPE 549 Query: 651 CGLVAILDAD---KEGFLRSK----TSLIQTIGRAARNVNSKVIL 688 LV ++DAD + G LR+ + Q GRA R +L Sbjct: 550 LTLVGVVDADLGLEGGDLRAGERTYQQVAQVAGRAGRGAKPGEVL 594 >gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS315] gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus pyogenes MGAS315] Length = 1139 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 12/206 (5%) Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 +G++GS K +A Q+ +V+ + +L S+ + V F + D Sbjct: 1 MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFADDVA 58 Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293 ++ + ++K S E + +R+ ++ +L + +S + + V + SQ Sbjct: 59 AAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTKSQ- 110 Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353 +QL +G+ + L L+ Y++ I G F GD ++I+ +++ +R+ F Sbjct: 111 -IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRLEFF 168 Query: 354 GNDIEEISEFYPLTGQKIRNVETIKI 379 G+DI+ I +F+P T + +E + I Sbjct: 169 GDDIDSIRQFHPETQKSFEQLEGVFI 194 >gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus] Length = 522 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R S K + + I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSIIENLTKKRM 362 Query: 710 KQLE 713 K L+ Sbjct: 363 KGLK 366 >gi|332674307|gb|AEE71124.1| DNA helicase RecG [Helicobacter pylori 83] Length = 621 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|325917666|ref|ZP_08179860.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC 35937] gi|325536130|gb|EGD07932.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC 35937] Length = 714 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 538 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 596 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 597 ---AQLHQLRGRVGRGAAASSCVLLY 619 >gi|297833736|ref|XP_002884750.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp. lyrata] gi|297330590|gb|EFH61009.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp. lyrata] Length = 539 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V +K A++L + L NIR +HS++ ER + R G+ VL+ +++ Sbjct: 381 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 440 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S ++ I IGR+ R Sbjct: 441 GMDFK--GINCVINYD---FPDSASAYIHRIGRSGR 471 >gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 944 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A+ L ++L + N V +H + ER ++ R G+ +L+ + G Sbjct: 419 LVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILIATAVAARG 478 Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 LDIP V D +D E + + IGR R Sbjct: 479 LDIPNVKHVINFDLPSDIEEY-------VHRIGRTGR 508 >gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131] gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131] Length = 539 Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1232 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 14/185 (7%) Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240 + F + ++ RP +V+ A L E + V Y+ ++ + E P Sbjct: 39 RAFITSGLVRRAGRPLLVVTSTFREAESLVDELSSLLGDEEVAYYPAW-ETLPHERLSPN 97 Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM-IVQLKI 299 +DT + +++ +R A + L +V S + V + + +V+L+ Sbjct: 98 SDT-------VGHRLEVLRRIAGKDDLPAPSVVVAPIRSVLQP--QVRGLADLPVVKLRT 148 Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIE 358 + + L + LV Y R D+ RG F V G ++IF P++ V RV FG+ IE Sbjct: 149 AEDYDPSRLEADLVAAAYSRVDLVERRGEFAVRGGIVDIFAPTYSHPV--RVDFFGDTIE 206 Query: 359 EISEF 363 ++ F Sbjct: 207 DLRFF 211 >gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630] gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile QCD-63q42] gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC 43255] gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase mfd) [Clostridium difficile] Length = 1128 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 21/178 (11%) Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 K+GDS++ ++L LV Y+R G F + G I++F + R+ +F ++I Sbjct: 143 KVGDSLDLEKLTEKLVSLGYERVSKIEGFGQFSIRGGIIDVFSLEYTN-PIRMELFDDEI 201 Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417 + I F + + I ++ I + ++ P T + +K KE K EG Sbjct: 202 DSIRTFDVYSQKSIDKLQQFSITPSREFIYPEKTTDALVKLKKETTKNT-----DEGTF- 255 Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 Q I Y + + + +ENY Y+ E ++F Y+ +D+++F+++ Sbjct: 256 ------QNIDY----ISSKTYFEGVENYIDYIY----PEENKSIFTYLADDAIVFIND 299 >gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group] gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group] gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group] gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group] Length = 759 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D+I + + G +I++ TKRM + L L R +H + ER ++ + R G+ Sbjct: 467 DQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGR 525 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +LV ++ GLDI + +V D F + IGR R Sbjct: 526 CPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 568 >gi|112983736|ref|NP_001037376.1| eukaryotic translation initiation factor 4A [Bombyx mori] gi|73695588|gb|AAZ80489.1| translation initiation factor 4A [Bombyx mori] Length = 420 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++A + ++ T+R + LTE ++ R+ V MH ++ ER I+R R Sbjct: 279 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 333 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + V Sbjct: 334 TGSSRVLITTDLLARGIDVQQVSCV 358 >gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus] Length = 621 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + L + +H + + +R + + D R GK VLV ++ Sbjct: 437 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 496 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 497 RGLDIPDVQFVVNFD-----LPNNIDEYVHRIGRTGRCGNT 532 >gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 486 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 230 TKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 287 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 288 SGVSHVINFD---LPQDPESYVHRIGRTGR 314 >gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length = 610 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK+ EDL E L R ++ ++ +R I L+ G D+LV ++ Sbjct: 257 MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 316 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R ++ +L+ + + +I+ Sbjct: 317 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGRTGDA--LLFVAPRERHLLKSIE 370 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 TTR+ +++ ++N Q V + Sbjct: 371 RTTRQPLTEIQLPTVEDVNAQRVSK 395 >gi|253743154|gb|EES99653.1| ATP-dependent RNA helicase-like protein [Giardia intestinalis ATCC 50581] Length = 657 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K A+ + Y + RV +H ++ ER ++ + G+ ++L+G ++ + GLDIP Sbjct: 479 KSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNV 538 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV L+ D G + T I GRA R Sbjct: 539 RLV--LNYDLPGNVDDYTHRIGRTGRAGR 565 >gi|237832369|ref|XP_002365482.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49] gi|211963146|gb|EEA98341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49] Length = 1053 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%) Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 A PG+ + +V QI++ V+ P++ + R +E+ N A ++ V Sbjct: 874 AVPGAMNT-AAKNSMVTQIVK---HVEEPLKAAALRADLEEFLSANNSQA------IVFV 923 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 +KR + I+ + ER ++ R+ R G+F VLV ++ GLD P Sbjct: 924 RSKRAIHPTAHTIRLAGIQTEVLTGNRTQPERQQVFRNFRDGRFPVLVATSVAARGLDFP 983 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLV +D +E + I GRA R Sbjct: 984 NVGLVINVDMPQE--MEHYVHRIGRTGRAGR 1012 >gi|212534924|ref|XP_002147618.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|210070017|gb|EEA24107.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] Length = 286 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH E+ ER I++D R Sbjct: 144 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 198 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 199 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 244 >gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Gallus gallus] Length = 655 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 332 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 391 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 392 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 445 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 446 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 472 >gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A] gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa] gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A] Length = 400 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 258 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 313 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 358 >gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 401 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359 >gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus] Length = 1916 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566 >gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus] Length = 1918 Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566 >gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina] Length = 763 Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 + L+ V KR A+ L YL + +H + ER E +RD + G +L+ ++ Sbjct: 560 KTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDFKRGTAPILIATSVAA 619 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDIPE V D S + IGR R N Sbjct: 620 RGLDIPEVKHVVNYD-----LPSSIDEYVHRIGRTGRCGN 654 >gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group] Length = 754 Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 D+I + + G +I++ TKRM + L L R +H + ER ++ + R G+ Sbjct: 463 DQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGR 521 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +LV ++ GLDI + +V D F + IGR R Sbjct: 522 CPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 564 >gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus] Length = 1908 Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 482 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 534 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 535 YRSYVQSKGRARAPISNYVML-ADT 558 >gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus] gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct] Length = 1906 Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 480 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 532 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 533 YRSYVQSKGRARAPISNYVML-ADT 556 >gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720] gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720] Length = 397 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK L + L + N V MH ++K ER I+ D R Sbjct: 257 DLYDSLTIT-----QAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQEERDSIMNDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + + IGR+ R Sbjct: 312 TGNSRVLISTDVWARGIDVQQVSLVINYDLPLDKENY-------VHRIGRSGR 357 >gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM 18228] gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM 18228] Length = 423 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 19/155 (12%) Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 QQ R+++ +K +++T+ L + V MHS++ +R I+ + R G+ ++LV Sbjct: 242 QQPERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGRINMLVAT 301 Query: 640 NLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 +++ G+DI + LV D D E + + IGR AR N + Sbjct: 302 DIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGCAI--------- 345 Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732 + ET + + KQ+E+ + I V E++ E Sbjct: 346 -TFVSETEQNKFKQIENFLEKEIYKIPVPEELGEA 379 >gi|221481739|gb|EEE20115.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1] Length = 1053 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%) Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 A PG+ + +V QI++ V+ P++ + R +E+ N A ++ V Sbjct: 874 AVPGAMNT-AAKNSMVTQIVK---HVEEPLKAAALRADLEEFLSANNSQA------IVFV 923 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 +KR + I+ + ER ++ R+ R G+F VLV ++ GLD P Sbjct: 924 RSKRAIHPTAHTIRLAGIQTEVLTGNRTQPERQQVFRNFRDGRFPVLVATSVAARGLDFP 983 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLV +D +E + I GRA R Sbjct: 984 NVGLVINVDMPQE--MEHYVHRIGRTGRAGR 1012 >gi|159029421|emb|CAO90797.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 832 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%) Query: 591 TKRMAEDLT-EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+ ++L+ E+ R +R + K R E+++ G+FDVLVG +L +GLDI Sbjct: 596 TQRVTQELSKEFPDLRCLRFDSDTTRNKNAPR-ELLKLFTDGEFDVLVGTQMLTKGLDIE 654 Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN-VNSKVIL 688 LV ++ AD G L R+ +L Q GRA R KVI+ Sbjct: 655 RVTLVGVMAAD--GLLYHSDYRASERAFQTLTQVAGRAGRGETEGKVII 701 >gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST] gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST] Length = 400 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LTE + E N V MH ++ ER EI+++ R Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 314 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 359 >gi|108761990|ref|YP_629050.1| DEAD/DEAH family helicase [Myxococcus xanthus DK 1622] gi|108465870|gb|ABF91055.1| helicase, DEAD/DEAH family [Myxococcus xanthus DK 1622] Length = 1280 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ + A + ++L + IR +H+ + +R + +R L G D + ++L Sbjct: 570 RTLVFCCSISHAHFVQQWLGGQGIRAVAVHAGAGSADRAQSLRQLANGTLDAICAVDLFN 629 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688 EG+D+P V +L + S +Q +GR R K VIL Sbjct: 630 EGVDVPSIDRVVMLRPTE-----SPVVFLQQLGRGLRKAKGKERVIL 671 >gi|329962241|ref|ZP_08300247.1| primosomal protein [Bacteroides fluxus YIT 12057] gi|328530349|gb|EGF57226.1| primosomal protein [Bacteroides fluxus YIT 12057] Length = 823 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 618 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAYQLMAQVAG 677 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I I Sbjct: 678 RAGRKNKRGRVVLQTKSIDHPI 699 >gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName: Full=Double-strand-specific ribonuclease mDCR-1 Length = 1916 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566 >gi|157150698|ref|YP_001449735.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str. Challis substr. CH1] gi|157075492|gb|ABV10175.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str. Challis substr. CH1] Length = 671 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + E+L Y + + RV +H ++K+ E+ I++ + + D+LV ++ G+++P + Sbjct: 484 LEEELQAY-FGGDARVSLLHGKMKSDEKEAIMQAFKNKEVDILVSTTVIEVGVNVPNATI 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T+S Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582 >gi|149053067|gb|EDM04884.1| eukaryotic translation initiation factor 4A1, isoform CRA_a [Rattus norvegicus] Length = 393 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|194363858|ref|YP_002026468.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194346662|gb|ACF49785.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 829 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%) Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605 +++P + +R SAR+Q + +A + GL+ L+ T+ M E LT+YL + + Sbjct: 284 VINPDLGLRASARSQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRK 340 Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 R+R ER E R +R G D +V + L G+DI +V + G+ Sbjct: 341 PPRIRAYRGGYLPTERRETERAMRAGTIDGIVSTSALELGVDIGSLDVVIL-----NGYP 395 Query: 666 RSKTSLIQTIGRAAR 680 S + Q GRA R Sbjct: 396 GSVAATWQRFGRAGR 410 >gi|332297440|ref|YP_004439362.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168] gi|332180543|gb|AEE16231.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168] Length = 744 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 595 AEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 AED+ +L + R+ +HS ++ E+ I+ D + G+ D+LV +++ G+D+P Sbjct: 564 AEDMYRFLSQEVYPQFRIALVHSRIEEAEQHRILDDFKNGRTDILVATSVVEVGVDVPNA 623 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + + AD+ G +L Q GR R+ Sbjct: 624 TCMVVEHADRFGM----AALHQLRGRVGRS 649 >gi|320590134|gb|EFX02577.1| dead box helicase [Grosmannia clavigera kw1407] Length = 1329 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S +K ++IE I + G F+VLV ++ EGLDI + L+ DA S ++Q Sbjct: 592 SGMKQKQQIEAIEKFKAGAFNVLVATSIGEEGLDIGQVDLIICYDASS-----SPIRMLQ 646 Query: 674 TIGRAARNVNSKVIL 688 +GR R VIL Sbjct: 647 RMGRTGRKRAGHVIL 661 >gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178 str. F0338] gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178 str. F0338] Length = 575 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ TKR A L E L R V +H ++ R + +R R GK DVLV ++ Sbjct: 331 RAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLVATDVAA 390 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----YADT-----IT 694 G+D+ + V ++ + I IGR R NS + + DT I+ Sbjct: 391 RGIDVDDVTHVVNYQCPED-----EKIYIHRIGRTGRAGNSGTAVTFVDWDDTPRWSLIS 445 Query: 695 KSIQLAIDE 703 K++ L + E Sbjct: 446 KALGLGVPE 454 >gi|317125440|ref|YP_004099552.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043] gi|315589528|gb|ADU48825.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043] Length = 755 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R +H ++T E+ +R G+ DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 570 GVRTAVLHGRLETDEKEATMRAFAAGEIDVLVATTVIEVGVDVPNASVMVVVDADRFGI- 628 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADT 692 + L Q GR R + L T Sbjct: 629 ---SQLHQLRGRVGRGSVPGLCLLVTT 652 >gi|302036528|ref|YP_003796850.1| putative ATP-dependent DNA helicase Lhr [Candidatus Nitrospira defluvii] gi|300604592|emb|CBK40924.1| putative ATP-dependent DNA helicase Lhr [Candidatus Nitrospira defluvii] Length = 1459 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + L+ V T+R+AE ++ YL E R+R++ EV + R +R Sbjct: 278 DIYDRVAALVEAHRSTLVFVNTRRLAERVSHYLEE---RLRHLGDEVVAAHHGSLSRTIR 334 Query: 630 L--------GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 L G V+V L G+D+ LV + G RS + +Q IGRA Sbjct: 335 LSAEDRLKTGAVRVVVATASLELGIDVGTVDLVCQI-----GSPRSIATGLQRIGRAGHW 389 Query: 682 VNS--KVILYADTITKSIQLA 700 V++ K L+A T + I+ A Sbjct: 390 VHAIPKGRLFATTRDELIECA 410 >gi|218921790|emb|CAW30776.1| IF protein [Haemonchus contortus] Length = 180 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +N+ + ++ T+R E LTE + ++ V +H +++ +R I+R+ R Sbjct: 84 DLYDAVNVT-----QAVIFCNTRRKVEQLTEQMTKKQFTVSSLHGDMEQQDRDVIMREFR 138 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 139 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 176 >gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length = 453 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK+ EDL E L R ++ ++ +R I L+ G D+LV ++ Sbjct: 257 MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 316 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R ++ +L+ + + +I+ Sbjct: 317 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGRTGDA--LLFVAPRERHLLKSIE 370 Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727 TTR+ +++ ++N Q V + Sbjct: 371 RTTRQPLTEIQLPTVEDVNAQRVSK 395 >gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407] Length = 713 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L +N +H + ER + R G+ +LV + G Sbjct: 481 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARG 540 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 541 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 576 >gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415] gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415] Length = 521 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709 G+ + + D + S + IGR R S K + + I+ T++R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSIIENLTKKRM 362 Query: 710 KQLE 713 K L+ Sbjct: 363 KGLK 366 >gi|307546355|ref|YP_003898834.1| primosomal protein N' [Halomonas elongata DSM 2581] gi|307218379|emb|CBV43649.1| K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [Halomonas elongata DSM 2581] Length = 745 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206 +G+Q AA+ L +G+ + LL GVTGSGKT ++IEA+ QR A+V+ P L Sbjct: 211 NGEQAAAMGALHEGLDAFHPC-LLHGVTGSGKTEVYLQLIEAVVGRQRQALVLVPEIGLT 269 Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 Q F+ F V D+ + +A+ Sbjct: 270 PQTLERFRKRFQVPVVALHSGLTDHERLDAW 300 >gi|293400344|ref|ZP_06644490.1| putative helicase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306744|gb|EFE47987.1| putative helicase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 385 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 13/163 (7%) Query: 526 IVVSATPGSWELEQC---QGIIVEQIIRPTG--LVDPPVEIRSARTQVEDVYDEINLAAQ 580 ++++ATP LE+ + +VE RP G L++P V Q+ + + Sbjct: 198 LMLTATPDEDMLERVKRQEVCMVELFQRPHGYPLIEPQVYQMPKAAQMVWMLYFLRKQKH 257 Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 G++ L+ V T MA L +L + R KT E+ ++I + ++D L+ Sbjct: 258 DGIQTLVFVPTIHMANTLYRFL---RLTHRCAVFTSKTKEKEKVIDEFHEKRYDFLITTT 314 Query: 641 LLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV 682 +L G+ I G+ V IL AD F + SLIQ IGR RN+ Sbjct: 315 ILERGITIR--GIYVMILCADHPIF--QEASLIQMIGRVGRNI 353 >gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae DGI18] gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae PID24-1] Length = 1234 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A +L + ++ F PH+ F+ ++ E + P D E+ S++ + ++ A Sbjct: 46 ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98 Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325 D + V + + + V + LK G +++ L + LV Y + Sbjct: 99 -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153 Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 G F V G +++FP E +R+ +F N+I+ I F T + I V I++ + Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDNEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 212 Query: 386 VTPRPTLNTAMKYIKEELK 404 PT + A K + + Sbjct: 213 ----PTDSEAQKIFRSRFR 227 Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 923 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 980 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015 >gi|224036359|pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-Eif4a gi|224036361|pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-Eif4a Length = 414 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 289 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 348 Query: 651 CGLV 654 LV Sbjct: 349 VSLV 352 >gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756] gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756] gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium 8_1_57FAA] Length = 1115 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++K E +I+ D G DVLV ++ GLDIP + I DAD+ G Sbjct: 806 VAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGL---- 861 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 862 SQLYQLRGRVGRS 874 Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust. Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 33/245 (13%) Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---- 216 + G + +K+ LL G+ GSG + + V+ N+ A + Y E+ F Sbjct: 30 ISGCVNTQKIHLLSGI-GSGCGYKL------------VVFSNEEKAKKAYEEYLLFGEET 76 Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276 + + A + Y D I+ ++ N +++ +R A + E ++ + Sbjct: 77 YLYPARDLLFYYAD--------------IKGKTLTNRRMEVLRAIAEKKK-EEPVTVITT 121 Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336 + + GI S + + + + D+V+ +L L Y+R+ G F V G I Sbjct: 122 MDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVRGGII 181 Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396 ++FP E++ R+ ++G++I+ I F + + I N+ I IY S L + + Sbjct: 182 DVFPLA-EEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGLVSFL 240 Query: 397 KYIKE 401 KY E Sbjct: 241 KYFPE 245 >gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus] Length = 1917 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 491 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 543 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 544 YRSYVQSKGRARAPISNYVML-ADT 567 >gi|21244116|ref|NP_643698.1| ATP-dependent DNA helicase RecG [Xanthomonas axonopodis pv. citri str. 306] gi|21109744|gb|AAM38234.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 717 Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622 >gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM 43021] gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM 43021] Length = 1204 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 110/273 (40%), Gaps = 41/273 (15%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265 A L + + N V F ++ + E PR DT ++ + + R+ H Sbjct: 97 AEDLAAALTSLLDPNTVAVFPAW-ETLPHERLSPRGDTVGQRLAVLR----RLAHPIEGD 151 Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320 + ++V+ V + G+G + V+L+ GD + ++ LV+ Y R Sbjct: 152 VAAGPLQVIVAPVRAVLQPIVRGLGDLRP-----VRLRAGDDADLDGIVHRLVENGYNRV 206 Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 D+ RG V G +++FP E+ R+ +G+ +EEI F K+ + ++++ Sbjct: 207 DMVEKRGEVAVRGGLLDVFPP-TEEHPLRLEFWGDSVEEIRWF------KVADQRSLEVA 259 Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440 + P L + E+++ R EL + L + L+ L + Sbjct: 260 EEGLFAAPCREL-----LLTEDVRRRARELAE---------LHPALAEILDQLAEGVPME 305 Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 +E ++ L G L +++P + +FV Sbjct: 306 GMEAFAPVLAGEM-----DLLIDHLPAQAAVFV 333 >gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum] Length = 939 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A+ L ++L + N V +H + ER ++ R G+ +L+ + G Sbjct: 418 LVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHALQSFRSGRTPILIATAVAARG 477 Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 LDIP V D +D E + + IGR R Sbjct: 478 LDIPNVKHVINFDLPSDIEEY-------VHRIGRTGR 507 >gi|224537786|ref|ZP_03678325.1| hypothetical protein BACCELL_02669 [Bacteroides cellulosilyticus DSM 14838] gi|224520606|gb|EEF89711.1| hypothetical protein BACCELL_02669 [Bacteroides cellulosilyticus DSM 14838] Length = 823 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 618 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVAG 677 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +VIL +I I Sbjct: 678 RAGRKNKRGRVILQTKSIDHPI 699 >gi|212639602|ref|YP_002316122.1| ATP-dependent DNA helicase RecG [Anoxybacillus flavithermus WK1] gi|212561082|gb|ACJ34137.1| RecG-like helicase [Anoxybacillus flavithermus WK1] Length = 682 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT Y Y+ R+ MH + + E+ E++R +LV ++ G+++P ++ I Sbjct: 494 LTHY-YKGRYRIGLMHGRLSSEEKEEVMRAFSANDIHILVSTTVVEVGVNVPNATVMVIY 552 Query: 658 DADKEGFLRSKTSLIQTIGRAARN-VNSKVILYAD 691 DAD+ G + L Q GR R S IL AD Sbjct: 553 DADRFGL----SQLHQLRGRVGRGQAQSYCILVAD 583 >gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619] gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619] Length = 1149 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 41/208 (19%), Positives = 90/208 (43%), Gaps = 21/208 (10%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + R +++ + A +L E + F P V F + YD Sbjct: 21 LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPGLPVLPFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G +++ +++ S L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQTIDVEQMRSRLEATGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379 +F ++IE + F P T + I V++I++ Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVDSIRL 211 Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 882 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 + I ADK G L Q GR R+ + YA +T + Q + +R E Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPARQKVSADAEKRLE 933 >gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM 17241] gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM 17241] Length = 572 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%) Query: 573 DEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 D +NL Q R ++ TK M + LTEYL + R +H ++K R ++++ R Sbjct: 231 DALNLLLQYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRD 290 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 GK +LV ++ G+D+ V D +E I GRA R S ++ Sbjct: 291 GKTRILVATDVAARGIDVENIEAVFNFDIPQE--FEHYIHRIGRTGRAGRTGMSHTLV 346 >gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] Length = 527 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L L R R +H ++ +R+ +++ + GK DVLV ++ GLDI Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|71051290|gb|AAH99392.1| Eif4a1 protein [Mus musculus] Length = 405 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 280 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 339 Query: 651 CGLV 654 LV Sbjct: 340 VSLV 343 >gi|74219920|dbj|BAE40541.1| unnamed protein product [Mus musculus] Length = 406 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 528 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L++ L R +H ++ R +I+R + GK D+LV ++ GLD+ Sbjct: 248 TKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAARGLDV-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+ + + D + S + IGR R + V L Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGHKGVSL 340 >gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 448 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +D+ L +V MHS+++ ER E++ + + DVLV +++ Sbjct: 246 RVIIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVN 683 G+DI + LV D D E + + IGR AR N Sbjct: 306 RGIDIDDIQLVINFDVPHDAEDY-------VHRIGRTARANN 340 >gi|322412399|gb|EFY03307.1| putative late competence protein required for DNA uptake [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 441 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 10/171 (5%) Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 +I+ + IR GL+ + R V+ + + + G +L+ + MAE +TE L Sbjct: 266 LILPKFIRSFGLLKKIHCQKLPRALVKSISQQ----RKTGCPLLIFLPIIAMAELVTELL 321 Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 + ++ +R++ I D R GK +LV +L G+ P V +L A Sbjct: 322 KLAFPEEQIACVSSQSADRVKDIDDFRQGKKGILVTTTILERGVTFPGVD-VFVLMAQHR 380 Query: 663 GFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTRRREK 710 G+ S SL+Q GR R++ KV + D I+++++ A E +K Sbjct: 381 GY--SSQSLVQIAGRVGRSIERPTGKVYFFHDGISQAMRNARKEIKEMNQK 429 >gi|322516063|ref|ZP_08069000.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124] gi|322125478|gb|EFX96824.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124] Length = 316 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 + ++LT++ + + V MH +K E+ +I++D + K +LV ++ G+++P + Sbjct: 129 LHQELTDF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 187 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705 + I+DAD+ G + L Q GR R + S +L A DT K +Q A+ ETT Sbjct: 188 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 239 >gi|308159971|gb|EFO62485.1| ATP-dependent RNA helicase-like protein [Giardia lamblia P15] Length = 655 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K A+ + Y + RV +H ++ ER ++ + G+ ++L+G ++ + GLDIP Sbjct: 479 KSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNV 538 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV L+ D G + T I GRA R Sbjct: 539 RLV--LNYDLPGNVDDYTHRIGRTGRAGR 565 >gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] Length = 768 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR + LT L R V MH + +R + + G+ ++L+ ++ Sbjct: 335 RTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNILIATDVAS 394 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDI V D F I IGR AR+ Sbjct: 395 RGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARS 427 >gi|253730160|ref|ZP_04864325.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726098|gb|EES94827.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 953 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQVVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|163852239|ref|YP_001640282.1| helicase domain-containing protein [Methylobacterium extorquens PA1] gi|163663844|gb|ABY31211.1| helicase domain protein [Methylobacterium extorquens PA1] Length = 545 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A + + + I + +E ER ++RD R GK LV + +L G ++PE L+ Sbjct: 258 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 317 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707 A+L + L +Q +GRA R K V+ YA + + +D T R Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 367 >gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 480 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A+ L ++LY+ +H + ER ++ R GK +LV ++ G Sbjct: 305 LVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTPILVATDVAARG 364 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 LDIP + +++ D + T I GRA + + + Sbjct: 365 LDIPH--VTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALF 405 >gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus] Length = 1906 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 480 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 532 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 533 YRSYVQSKGRARAPISNYVML-ADT 556 >gi|326903247|gb|EGE50180.1| LOW QUALITY PROTEIN: hypothetical protein TBPG_01112 [Mycobacterium tuberculosis W-148] Length = 125 Score = 44.3 bits (103), Expect = 0.093, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 29/121 (23%) Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK------GKA- 762 KQ+ +N+ + I+PQ +++KI +++D + E T + + + S+ + G+A Sbjct: 2 KQIAYNEANGIDPQPLRKKIADILDQVYREADDTAVVEVGGSGRNASRGRRAQGEPGRAV 61 Query: 763 --------------------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802 +K L QM AA +L FE AAR RDEI LK +G+ Sbjct: 62 SAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFELAARFRDEIADLKRE--LRGM 119 Query: 803 D 803 D Sbjct: 120 D 120 >gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX17-like [Ailuropoda melanoleuca] Length = 775 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 457 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 516 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 517 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 570 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 571 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 597 >gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102] gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102] Length = 401 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359 >gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 407 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 265 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 319 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 320 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 365 >gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba] gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba] Length = 2250 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 551 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 605 Query: 683 NSKVILYADTITKSIQLAIDETTR 706 VIL A T A+ T R Sbjct: 606 AYHVILVAPTYKSPPVGAVQLTDR 629 >gi|168187210|ref|ZP_02621845.1| DNA/RNA helicase [Clostridium botulinum C str. Eklund] gi|169294890|gb|EDS77023.1| DNA/RNA helicase [Clostridium botulinum C str. Eklund] Length = 833 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 13/118 (11%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKF 633 N + R L +K+ A+ + +Y ++ Y SE + ++R E I L G+ Sbjct: 444 NYKKYKSTRALGFCTSKKHAKFMADYFNNAGVKACAVYSGSESEDIDRKEAISMLAKGEV 503 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSKVIL 688 VL I++ EGLDIP +V FLR S T +Q +GR R K L Sbjct: 504 KVLFSIDMFNEGLDIPSIDMVM--------FLRPTESPTIFLQQLGRGLRKYQDKKYL 553 >gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus] Length = 1539 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 474 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 526 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 527 YRSYVQSKGRARAPISNYVML-ADT 550 >gi|72382000|ref|YP_291355.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. NATL2A] gi|72001850|gb|AAZ57652.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. NATL2A] Length = 846 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TE E N+ + +H ++K++E+ E+I++ K D+LV ++ G+D+P ++ I D Sbjct: 660 TEIFSEFNVEL--LHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIED 717 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 +D+ G L Q GR R + L + Sbjct: 718 SDRFGL----AQLHQLRGRVGRGASKSYCLLS 745 >gi|4503529|ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens] gi|21450625|ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus] gi|40786436|ref|NP_955404.1| eukaryotic initiation factor 4A-I [Rattus norvegicus] gi|77735407|ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus] gi|154147660|ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa] gi|326807000|ref|NP_001192066.1| eukaryotic initiation factor 4A-I [Callithrix jacchus] gi|149724255|ref|XP_001504824.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 1 [Equus caballus] gi|291405131|ref|XP_002718844.1| PREDICTED: eukaryotic translation initiation factor 4A-like [Oryctolagus cuniculus] gi|301778191|ref|XP_002924476.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Ailuropoda melanoleuca] gi|46397463|sp|P60842|IF4A1_HUMAN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I; Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase eIF4A-1 gi|46397464|sp|P60843|IF4A1_MOUSE RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I; Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase eIF4A-1 gi|109892471|sp|Q3SZ54|IF4A1_BOVIN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I; Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase eIF4A-1 gi|219403|dbj|BAA02897.1| eukaryotic initiation factor 4AI [Homo sapiens] gi|2943740|dbj|BAA25075.1| eIF4A [Mus musculus] gi|16307020|gb|AAH09585.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo sapiens] gi|26346290|dbj|BAC36796.1| unnamed protein product [Mus musculus] gi|29612606|gb|AAH49915.1| Eukaryotic translation initiation factor 4A1 [Mus musculus] gi|39793992|gb|AAH63812.1| Eukaryotic translation initiation factor 4A1 [Rattus norvegicus] gi|49522221|gb|AAH73752.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo sapiens] gi|54696622|gb|AAV38683.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo sapiens] gi|54696624|gb|AAV38684.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo sapiens] gi|58864806|emb|CAI51943.1| eukaryotic translation initiation factor 4A1 [Mus musculus] gi|61357581|gb|AAX41409.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic construct] gi|61357587|gb|AAX41410.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic construct] gi|74138684|dbj|BAE27158.1| unnamed protein product [Mus musculus] gi|74138757|dbj|BAE27191.1| unnamed protein product [Mus musculus] gi|74139346|dbj|BAE40818.1| unnamed protein product [Mus musculus] gi|74139356|dbj|BAE40821.1| unnamed protein product [Mus musculus] gi|74139407|dbj|BAE40845.1| unnamed protein product [Mus musculus] gi|74141945|dbj|BAE41037.1| unnamed protein product [Mus musculus] gi|74151432|dbj|BAE38831.1| unnamed protein product [Mus musculus] gi|74151508|dbj|BAE38862.1| unnamed protein product [Mus musculus] gi|74177669|dbj|BAE38935.1| unnamed protein product [Mus musculus] gi|74185163|dbj|BAE39182.1| unnamed protein product [Mus musculus] gi|74188940|dbj|BAE39241.1| unnamed protein product [Mus musculus] gi|74189138|dbj|BAE39326.1| unnamed protein product [Mus musculus] gi|74189153|dbj|BAE39332.1| unnamed protein product [Mus musculus] gi|74193609|dbj|BAE22765.1| unnamed protein product [Mus musculus] gi|74198159|dbj|BAE35256.1| unnamed protein product [Mus musculus] gi|74201277|dbj|BAE26099.1| unnamed protein product [Mus musculus] gi|74204464|dbj|BAE39979.1| unnamed protein product [Mus musculus] gi|74208421|dbj|BAE26397.1| unnamed protein product [Mus musculus] gi|74211475|dbj|BAE26477.1| unnamed protein product [Mus musculus] gi|74220076|dbj|BAE40614.1| unnamed protein product [Mus musculus] gi|74220399|dbj|BAE31424.1| unnamed protein product [Mus musculus] gi|74268155|gb|AAI03131.1| Eukaryotic translation initiation factor 4A, isoform 1 [Bos taurus] gi|85792232|gb|ABC84193.1| eukaryotic translation initiation factor 4A isoform 1 [Sus scrofa] gi|90076216|dbj|BAE87788.1| unnamed protein product [Macaca fascicularis] gi|119610573|gb|EAW90167.1| eukaryotic translation initiation factor 4A, isoform 1, isoform CRA_b [Homo sapiens] gi|119610574|gb|EAW90168.1| eukaryotic translation initiation factor 4A, isoform 1, isoform CRA_b [Homo sapiens] gi|123992423|gb|ABM83970.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic construct] gi|123999458|gb|ABM87287.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic construct] gi|149053069|gb|EDM04886.1| eukaryotic translation initiation factor 4A1, isoform CRA_c [Rattus norvegicus] gi|168279007|dbj|BAG11383.1| eukaryotic initiation factor 4A-I [synthetic construct] gi|189069177|dbj|BAG35515.1| unnamed protein product [Homo sapiens] gi|296476703|gb|DAA18818.1| eukaryotic translation initiation factor 4A isoform 1 [Bos taurus] gi|227238|prf||1617105B initiation factor 4AI Length = 406 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|159110489|ref|XP_001705502.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC 50803] gi|157433587|gb|EDO77828.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC 50803] Length = 656 Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 K A+ + Y + RV +H ++ ER ++ + G+ ++L+G ++ + GLDIP Sbjct: 479 KSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNV 538 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV L+ D G + T I GRA R Sbjct: 539 RLV--LNYDLPGNVDDYTHRIGRTGRAGR 565 >gi|257069043|ref|YP_003155298.1| ATP-dependent DNA helicase RecQ [Brachybacterium faecium DSM 4810] gi|256559861|gb|ACU85708.1| ATP-dependent DNA helicase RecQ [Brachybacterium faecium DSM 4810] Length = 762 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ LT AEDL E L RVR ER E+ R L+ + L + L G Sbjct: 271 IIYTLTVSAAEDLAELLDRPGRRVRAYTGRTDAEERAELERALKENEVKALAATSALGMG 330 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 D P+ G V L A S + Q +GRA R ++ +L Sbjct: 331 FDKPDLGFVVHLGAPS-----SPVAYYQQVGRAGRATDTADVL 368 >gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum JIP02/86] gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum JIP02/86] Length = 1117 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 17/230 (7%) Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 A I LLK I K+ + G+ GS +F + + + +++ K AA + ++ + Sbjct: 14 AKIVNLLKTIKGDNKIHIK-GLVGSSFSFVIEALFAKSENSFLLLCNEKEEAAYILNDLE 72 Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CI 273 V ++ S Y R IE + N +R L R I Sbjct: 73 QLVSDQDVLFYPSSY----------RRPYQIEDTDNANV---LLRSEVLNRLNSRKKPAI 119 Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 +VS I+ + + + + +++ +GD V + L + ++KR D G F V Sbjct: 120 IVSYPEAIFEKVVTKKELDKNTLKISVGDLVSIDFINEVLFEYEFKRVDFITEPGEFSVR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382 G +++F S D +R+ FGN+++ I F T I I I N Sbjct: 180 GGILDVF-SFSNDNPYRIEFFGNEVDSIRTFDVATQLSIEKKNKIAIIPN 228 Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYER---NIRVRYM 612 P+E E + D I+ ++G ++ + R+ E++ E + +R + +V Sbjct: 744 PIETHVVGFNEETIRDAISFEIERGGQVFF--INNRI-ENIKEVAGMIQRLVPDAKVGIG 800 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H ++ + E++ G+FDVLV ++ GLD+P + I +A+ G + L Sbjct: 801 HGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGL----SDLH 856 Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 Q GR R+ N K Y S+ + E R+R + LE Sbjct: 857 QMRGRVGRS-NKKAFCYFICPPYSV---MTEDARKRIQALEQ 894 >gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan troglodytes] Length = 775 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 338 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 397 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 398 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 449 >gi|398103|gb|AAA26886.1| Exp9 [Streptococcus pneumoniae] Length = 78 Score = 44.3 bits (103), Expect = 0.094, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 TKR ++LT L R R +H ++ +R+ ++RD + G DVLV ++ GLDI Sbjct: 7 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI 64 >gi|197099748|ref|NP_001126779.1| eukaryotic initiation factor 4A-I [Pongo abelii] gi|73621051|sp|Q5R5F5|IF4A1_PONAB RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I; Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase eIF4A-1 gi|55732624|emb|CAH93011.1| hypothetical protein [Pongo abelii] Length = 406 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 515] gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 515] Length = 528 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314] gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314] gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314] gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314] Length = 399 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD NL Q + + TK L + + ++N V MH ++K ER I+ D R Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + I IGR+ R Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358 >gi|323320775|gb|ADX36410.1| eukaryotic initiation factor-like protein [Brachymyrmex patagonicus] Length = 256 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE +++R+ V MH +++ ER I+R R Sbjct: 115 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 169 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 170 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 207 >gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066] gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066] Length = 683 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 11/155 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V TK AED+ L R + +H ++ +R +II L+ G D+++ ++ Sbjct: 295 VLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAAR 354 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA R + IL+ + I+ Sbjct: 355 GLDVDRITHVFNYDIPYDAESYVHR----IGRTGRAGR--QGEAILFVSPRERRALRQIE 408 Query: 703 ETTRRREKQLEHNKKHNINP---QSVKEKIMEVID 734 TR+R + + ++N ++ + +I+E I+ Sbjct: 409 RVTRQRIEPMRMPTVADVNKRRLENFRNQILETIE 443 >gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis FRI909] Length = 1166 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 25/186 (13%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 +K+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 138 IKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 ++ I +F T + N+ ++I S Y+ + +++++ ELK + Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIIT----DEVIQHLQNELK----------KA 241 Query: 417 LEAQR--LEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFEYIPEDS 469 E R +E+ + DL+ ET S + E+ + L R E P TL +Y +++ Sbjct: 242 YEYTRPKIEKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYEKPSTLIDYFQKNA 299 Query: 470 LLFVDE 475 ++ VDE Sbjct: 300 IVVVDE 305 >gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi] Length = 971 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V TK+ +DL + + +H + ER +++D R GK +LV ++ Sbjct: 519 KIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 578 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + V D + S I IGR R Sbjct: 579 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 610 >gi|260664026|ref|ZP_05864879.1| primosomal protein N [Lactobacillus jensenii SJ-7A-US] gi|260561912|gb|EEX27881.1| primosomal protein N [Lactobacillus jensenii SJ-7A-US] Length = 797 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 15/106 (14%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641 L T+++ E+LTE L R + +V T R EI+ G D+L+G + Sbjct: 553 FLGTGTQKVEEELTELL----PGARVLRMDVDTTRRKGSYKEILDKFGAGNADILLGTQM 608 Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 + +GLD P LV +++AD +L ++ L Q GRA R Sbjct: 609 IAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGR 654 >gi|158257374|dbj|BAF84660.1| unnamed protein product [Homo sapiens] Length = 406 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum] Length = 386 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 +VE V +E L+ + G +L+ K+ +D+ EYL + + +H + E Sbjct: 226 EVEYVKEEFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSE 285 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I R GK D+LVG ++ +GLD P V D K+ + + IGR R Sbjct: 286 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 340 >gi|54696620|gb|AAV38682.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic construct] gi|61367705|gb|AAX43035.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic construct] Length = 407 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188] Length = 1482 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++LV ++L EG+D+ C LV DA + + S IQ GR AR S Sbjct: 475 IDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDA-----ISNLRSFIQRRGR-ARKERS 528 Query: 685 KVILYADTITKS 696 K +++ + KS Sbjct: 529 KFVIFLNGDDKS 540 >gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 695 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L +N +H + ER + R G+ +LV + G Sbjct: 455 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARG 514 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 LDIP V D + + IGR R N+ Sbjct: 515 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNT 548 >gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17] gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17] Length = 579 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K + + L ++I MHS+++ ER +I+ + G+ DVLV +++ Sbjct: 247 RVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + +V D D E + + IGR AR Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338 >gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus LMS2-1] gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG] gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705] gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus LMS2-1] gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG] gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705] gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG] Length = 502 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ ++R + G+ D LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 G+ + + D + S + IGR R + V Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGHKGV 338 >gi|148667738|gb|EDL00155.1| mCG1035528 [Mus musculus] Length = 406 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|148727325|ref|NP_001092045.1| eukaryotic initiation factor 4A-I [Pan troglodytes] gi|158514251|sp|A5A6N4|IF4A1_PANTR RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I; Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase eIF4A-1 gi|146741502|dbj|BAF62407.1| eukaryotic translation initiation factor 4A, isoform 1 [Pan troglodytes verus] Length = 406 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|108798904|ref|YP_639101.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS] gi|119868019|ref|YP_937971.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS] gi|108769323|gb|ABG08045.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS] gi|119694108|gb|ABL91181.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS] Length = 741 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ MH + E+ ++ R G+ DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 560 GLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 618 Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690 + L Q GR R + L A Sbjct: 619 ---SQLHQLRGRIGRGSYPSLCLLA 640 >gi|290985850|ref|XP_002675638.1| predicted protein [Naegleria gruberi] gi|284089235|gb|EFC42894.1| predicted protein [Naegleria gruberi] Length = 920 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 21/123 (17%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 II D R G F+VLV + EGLDI E L+ + D+ S T LIQ +GR R Sbjct: 559 IIHDFRDGIFNVLVSTPIGEEGLDIGEIDLIVLYDS-----ASSPTRLIQRVGRTGRKRK 613 Query: 684 SKVI----------LYADTITKSIQL--AIDETTRRRE-KQLEHNKK---HNINPQSVKE 727 ++ Y ++I + L A+ E + K E N + + I PQ V+E Sbjct: 614 GNIVALLSEGRERHAYEESIKQKKVLIDALKEIPYHNDVKFFEKNMRMVPNQIIPQVVRE 673 Query: 728 KIM 730 KI+ Sbjct: 674 KII 676 >gi|256843386|ref|ZP_05548874.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN] gi|256614806|gb|EEU20007.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN] Length = 678 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 566 TQVEDVYDEINLAAQQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSE 615 +Q+++VY ++ QG +I L+T L + AE+L E L N +V +H + Sbjct: 449 SQMKEVYRQMQEQLNQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQ 508 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + ++ EI+ G+ D+LV +++ G+D+ ++ I +AD+ G + L Q Sbjct: 509 MPGAQKDEIMTAFAAGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLR 564 Query: 676 GRAARN-VNSKVILYADTITKS 696 GR R S + AD T S Sbjct: 565 GRIGRGQTQSYCVFLADPKTDS 586 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V ++ I Q L + +L + + + E L +RV + K Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 TLER EI R+L G +V++G + L+++ + + GLV I Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383 >gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1] Length = 399 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD NL Q + + TK L + + ++N V MH ++K ER I+ D R Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + I IGR+ R Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358 >gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940] gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940] Length = 833 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 25/154 (16%) Query: 554 LVDPPVEIRSARTQVEDVYD------------EINLAAQQGLRILLTVLTKRMAEDLTEY 601 L+ P ++R AR + ED D L G R+++ ++ AE LT++ Sbjct: 333 LISAP-KVREARRKAEDFEDLHPKFRRTRMQIAETLGIHDGERVIVFTESRDTAETLTDF 391 Query: 602 LYERNIRVRYMHSE-------VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 L E +++ + E+ E + R G+F+VLV ++ EGLD+PE LV Sbjct: 392 LGEHFSVEKFVGQSDTDGSDGMTQTEQQETLEAFRAGEFEVLVSTSVAEEGLDVPEVDLV 451 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + + + IQ GR R V++ Sbjct: 452 LFYEP-----VPTAIRSIQRKGRTGRQTEGAVVV 480 >gi|188528292|ref|YP_001910979.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Shi470] gi|188144532|gb|ACD48949.1| DNA recombinase (recG) [Helicobacter pylori Shi470] Length = 623 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERFKAFIASLPFQLTNDQQNAIKEIQSDLASPIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199] gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199] Length = 1162 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 + LK+GD + + LL+ + Y R D G F V G I++FP+ +++ A R+ FG Sbjct: 133 LTLKVGDDMPLESLLAMFTRSGYGRTDTVREPGEFAVRGGIIDVFPTGMDEPA-RLDFFG 191 Query: 355 NDIEEISEF 363 +++E + F Sbjct: 192 DELEAVRTF 200 >gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15] gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15] Length = 401 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359 >gi|73966209|ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A, isoform 1 isoform 2 [Canis familiaris] Length = 406 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1150 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 63/307 (20%), Positives = 120/307 (39%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ A +R +++ + A +L E K F P V +F + YD Sbjct: 21 LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE++++ L R L+ Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220 Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L + + IE Y E TLF+Y+ Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275 Query: 466 PEDSLLF 472 P+DS +F Sbjct: 276 PQDSQVF 282 Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 30/103 (29%) Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638 R +V Y+H++VKT+E+ E++ + R+G +F+VL+ Sbjct: 811 RGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERDLEQVMSDFYHKRFNVLIA 870 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ G+D+P + I ADK G L Q GR R+ Sbjct: 871 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|313681446|ref|YP_004059184.1| ATP-dependent DNA helicase recg [Sulfuricurvum kujiense DSM 16994] gi|313154306|gb|ADR32984.1| ATP-dependent DNA helicase RecG [Sulfuricurvum kujiense DSM 16994] Length = 595 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 152 DQPAAIAQL---LKGIHSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAA 207 DQ AIA + L+G ++ + +++G GSGKT +A VI +I+MAP ILAA Sbjct: 225 DQQNAIADIGSDLRGENAARR--MIVGDVGSGKTMVILASVILMHPYRSILMAPTTILAA 282 Query: 208 QLYSEFKNFFP 218 QLY E + + P Sbjct: 283 QLYEEAQKYLP 293 >gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JDM301] gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp. longum JDM301] Length = 1194 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L E PH E PR DT + + R++H + + Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDPMF 143 Query: 269 RNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 I+V + + G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3] Length = 1509 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++LV ++L EG+D+ C LV DA + + S IQ GR AR S Sbjct: 501 IDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDA-----ISNLRSFIQRRGR-ARKERS 554 Query: 685 KVILYADTITKS 696 K +++ + KS Sbjct: 555 KFVIFLNGDDKS 566 >gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis HTCC2594] gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis HTCC2594] Length = 1162 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%) Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 + +G + + L + L +Q Y R D + G + + G ++IFPS L D R+ FG+ Sbjct: 129 EFAVGTEIGMESLSALLRRQGYTRTDTVVDSGEYAIRGSIVDIFPSGL-DQGLRLDFFGD 187 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 ++E + F P T + E IK SH + P Sbjct: 188 ELESLRLFDPSTQM---STEVIK----SHLLLP 213 >gi|34556787|ref|NP_906602.1| ATP-dependent DNA helicase RecG [Wolinella succinogenes DSM 1740] gi|34482502|emb|CAE09502.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes] Length = 605 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 150 SGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAA 207 + Q AI + + + S + + +++G G GKT +A A + A++MAP ILA Sbjct: 229 TSGQKEAIGAIWRDLSSSKAARRIIMGDVGCGKTLVILAAAYMAYPKQAVLMAPTTILAE 288 Query: 208 QLYSEFKNFFP 218 QLY+E K F P Sbjct: 289 QLYAEAKRFLP 299 >gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM 15952] gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM 15952] Length = 1179 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 44/240 (18%), Positives = 98/240 (40%), Gaps = 21/240 (8%) Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 QL+ G+ GS K + + +++ +V+ PN A QL + + Sbjct: 27 QLITGLAGSAKNLAIVGAFQKLEQSVVVVVPNLYYANQLAEDLR---------------- 70 Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288 + Q + YV D + E + + AT + + E ++ + + + Sbjct: 71 HVQEQVYVFPVDEVLSAEMAFASADAKAERVATLTAIAAEERGIYILPVAALRKRLPKKQ 130 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVA 347 ++ + + + D ++ ++L V+ + RQ + G F + G ++I+P + + V Sbjct: 131 TWQNAQLSIALEDELDLEQLPKKFVQMGFVRQAMIEKPGDFSIRGSIVDIYPLNQVHPV- 189 Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407 R+ +F +++ I F T + + VE I I + + + ++E L+ RL Sbjct: 190 -RIELFDVEVDSIRYFDAQTQRSLEQVEKIAIQPTTELIFAPEDFEHGKETLREMLEKRL 248 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 + R+ Y H ++ ++ + D G++D+LV ++ G+DIP + + +AD G Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGEYDILVTTTIIETGVDIPNANTLFVENADYMGL- 912 Query: 666 RSKTSLIQTIGRAARN 681 ++L Q GR R+ Sbjct: 913 ---STLYQLRGRVGRS 925 >gi|312384402|gb|EFR29139.1| hypothetical protein AND_02178 [Anopheles darlingi] Length = 819 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE + E+ V MH +++ +R I++ R Sbjct: 419 DLYDTLSIT-----QAVIFCNTRRKVDQLTEEMTEKTFTVSAMHGDMEQRDRDLIMKQFR 473 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + LV Sbjct: 474 TGSSRVLITTDLLARGIDVQQVSLV 498 >gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] Length = 584 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA ++ +++ V TK E++ E L ++ +R +H ++ R II R G D+L Sbjct: 240 LAVEEYQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDIL 299 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695 V ++ GLD+ V D + + + IGR R S V IL+ Sbjct: 300 VATDVAARGLDVERVTHVINYDLPHD-----NETYVHRIGRTGRAGRSGVAILFVTPKES 354 Query: 696 SIQLAIDETTRRR 708 + +++ TR+R Sbjct: 355 RLISSVERHTRQR 367 >gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] Length = 1509 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 I DLR GK ++LV ++L EG+D+ C LV DA + + S IQ GR AR S Sbjct: 501 IDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDA-----ISNLRSFIQRRGR-ARKERS 554 Query: 685 KVILYADTITKS 696 K +++ + KS Sbjct: 555 KFVIFLNGDDKS 566 >gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 480 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++++ V K +A +L L++ V +H + + ER ++I + G +L+ ++ Sbjct: 297 KVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTLRLLIATDVAA 356 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689 GLD+ + G+V ++ D + I IGR R +K I Y Sbjct: 357 RGLDVKDVGVV--VNYDMPVGVNGAEDYIHRIGRTGR-AGAKGIAY 399 >gi|156837570|ref|XP_001642807.1| hypothetical protein Kpol_365p4 [Vanderwaltozyma polyspora DSM 70294] gi|156113378|gb|EDO14949.1| hypothetical protein Kpol_365p4 [Vanderwaltozyma polyspora DSM 70294] Length = 691 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Query: 602 LYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 L+ +N + Y+ ++R E I+D + GK +VLV + EG DIP + + Sbjct: 309 LFNKNGVNAEYVLGSTNDVKRDETIKDFKNGKIEVLVNCGIFTEGTDIPSIDCILLGRPT 368 Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK 685 K S++ LIQ IGR R +SK Sbjct: 369 K-----SRSLLIQMIGRGLRLHHSK 388 >gi|74139596|dbj|BAE40935.1| unnamed protein product [Mus musculus] Length = 406 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae COH1] gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae COH1] gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813] Length = 528 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera] Length = 568 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +G + ++ TKR A+ L Y RN R +H ++ +R + R G F+VLV + Sbjct: 359 KGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 417 Query: 641 LLREGLDIPECGLV 654 + GLDIP L+ Sbjct: 418 VAARGLDIPNVDLI 431 >gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586] gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586] Length = 1150 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 38/303 (12%) Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 Q LLG +TG+ A+++E +++ P+ A +L E + F H Sbjct: 17 QRLLGQLTGAACAVECAEIVERHTGLVVLITPDMQNALRLRDEIQQFTGH---------- 66 Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289 P +P +T S +++I R S L +++ V+ + + Sbjct: 67 ----PVMMLPDWETLPYDSFSPHQEIVSARLSTLYQLPSLTRGVLILPVNTLMQKVCPHA 122 Query: 290 YSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + + LK G + + L S L + Y+ D + G F G +++FP E+ + Sbjct: 123 FLHGHALMLKKGQRLSRDRLRSQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PF 181 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ F ++I+ + F T + + VE I + + T + + +E+ ++R Sbjct: 182 RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKNAIELFRSQWREQFEVR-- 239 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 +A+ + Q++ + G+ + Y + L +P P LF Y+P Sbjct: 240 --------RDAEHIYQQV--------SKGTLPAGIEYWQPLFF---NQPLPALFSYLPTG 280 Query: 469 SLL 471 +LL Sbjct: 281 TLL 283 >gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7] gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7] gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum] Length = 390 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+ + LT+ + E N V MH+ + ER +I+ R KF VL+ ++ GLD+ E Sbjct: 265 TQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQE 324 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D S+ S I IGR+ R Sbjct: 325 VSLVVNYDLPN-----SRESYIHRIGRSGR 349 >gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-] gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein dcr1; AltName: Full=RNA interference pathway protein dcr1; Includes: RecName: Full=Endoribonuclease dcr1; Includes: RecName: Full=ATP-dependent helicase dcr1 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe] Length = 1374 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 14/137 (10%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 + + + GK++VL+ + EG+D+P C LV + R+ T +Q+ GR AR + Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVI-----RFNICRTVTQYVQSRGR-ARAM 467 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHN----KKHNINPQSVKEKIMEVIDPILL 738 SK +++ +T +L I E EK L+ NI V E+ V D I+ Sbjct: 468 ASKFLIFLNT----EELLIHERILHEEKNLKFALSELSNSNIFDSLVCEERERVTDDIVY 523 Query: 739 EDAATTNISIDAQQLSL 755 E T + +SL Sbjct: 524 EVGETGALLTGLYAVSL 540 >gi|270291093|ref|ZP_06197316.1| II DNA/RNA helicase [Pediococcus acidilactici 7_4] gi|270280489|gb|EFA26324.1| II DNA/RNA helicase [Pediococcus acidilactici 7_4] Length = 599 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 9/136 (6%) Query: 554 LVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRV 609 L+D +R A+ +++ V ++I+ G R+ + R AE ++ + + + Sbjct: 410 LIDEKTPLRHLLAQERMDYVAEQIDYYGHDGERVYGLIFCSRQAEAVEVAQIMTAKGHPT 469 Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669 R + ER +IIR G+ + LV +++ EG+DIP+ V +L + S Sbjct: 470 RALTGNTSVSEREKIIRRFEKGELEYLVTVDIFNEGVDIPKVNQVIMLRNTE-----SSI 524 Query: 670 SLIQTIGRAARNVNSK 685 IQ +GR R K Sbjct: 525 IFIQQLGRGLRKAPEK 540 >gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster bacterium] gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase) [uncultured SUP05 cluster bacterium] Length = 1143 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 44/244 (18%) Query: 284 IGSVESYSQMIVQLKI----------GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 I ++ES SQ + L+ GD +E L+K Y R + G F + G Sbjct: 109 ITTLESLSQHLCPLEFSKKYSFSLESGDELEMHNFSEKLLKIGYHRVTTVMEHGEFNIKG 168 Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393 ++++P + +R+ +F +IE I F P T + I ++ I + + T Sbjct: 169 SLVDLYPMGAKS-PYRIDLFDQEIESIRTFDPSTQRSIELIDQISLLPAREFATD----T 223 Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 T+++ K K L + + E R+ +E S + N Sbjct: 224 TSIEVFK---KNYLKAFNNTDDFIFTEVSESRLPSGIEFY-----------LSLFFNHTN 269 Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513 TLF+Y+P ++++ ++ T+ + Y GD H + A+ S +D PL Sbjct: 270 ------TLFDYLPHNTVVATNQGFSTL--VDQTY-GDLHTRHKNAK------SNLDRLPL 314 Query: 514 RFEE 517 F++ Sbjct: 315 DFDQ 318 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 8/108 (7%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 NI VR H ++ + E I+ D G+F +LV ++ G+DIP + I +A G Sbjct: 835 NIHVRIAHGQMPSKELERIMSDFYHGRFQILVCTTIIETGIDIPNANTIIINNAQNFGL- 893 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 L Q GR R+ + YA + KS Q ++ + ++R +E Sbjct: 894 ---AQLHQLRGRVGRSHHRA---YAYLVIKSHQ-SLSKNAKKRLDAIE 934 >gi|229824775|ref|ZP_04450844.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC 49176] gi|229791104|gb|EEP27218.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC 49176] Length = 681 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 E+LT L +++Y+H ++K E+ +I+ + G+ D+L+ ++ G+++P ++ Sbjct: 492 TEELTS-LIGNKAKIKYLHGKMKNDEKNQIMEEFSDGRIDILISTTVVEVGVNVPNATVM 550 Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695 I +AD+ G SL Q GR R N S I + +K Sbjct: 551 MIENADRFGL----ASLHQLRGRIGRGNAQSYCIFMSGNTSK 588 >gi|156057183|ref|XP_001594515.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980] gi|154702108|gb|EDO01847.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980 UF-70] Length = 638 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 VE S R + D+ I A R ++ V TKR A+++ +YL+ ++ +HS+ Sbjct: 402 VEAASKRKALYDLLLSIPPA-----RTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRTQ 456 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDI 648 ER + IR R G+ +L+ + GLD+ Sbjct: 457 REREDSIRAFRNGRMPILIATGVSARGLDV 486 >gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1143 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +I++ Y H ++ + E++ D GK+DVLV ++ G+D+P + + DAD+ G Sbjct: 841 DIKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGL- 899 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 900 ---AQLYQLRGRVGRS 912 >gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1] gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1 Length = 401 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359 >gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] Length = 579 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K + + L ++I MHS+++ ER +I+ + G+ DVLV +++ Sbjct: 247 RVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIVA 306 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + +V D D E + + IGR AR Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338 >gi|269794445|ref|YP_003313900.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542] gi|269096630|gb|ACZ21066.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542] Length = 758 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 +A +L R +R+ +H ++ E+ + G+ D+LV ++ G+D+P Sbjct: 562 VAAELAALEVFRGVRIGILHGQMPQAEKEAAMAAFTAGEVDLLVSTTVIEVGVDVPRATA 621 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + +LDAD+ G + L Q GR R ++ + Sbjct: 622 MVVLDADRFGL----SQLHQLRGRVGRGADAGI 650 >gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114] gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114] Length = 1134 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ + Sbjct: 37 VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++ A D + V + + + V + LK G +++ L S LV Sbjct: 93 -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP E + +R+ +F ++I+ I F T + I V Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 825 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 881 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 882 -AQLHQLRGRVGRSHHQAYSYLLTPEYITKDAEKRLD 917 >gi|237751833|ref|ZP_04582313.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879] gi|229373199|gb|EEO23590.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879] Length = 614 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 171 QLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 ++++G G GKT +A VI A + +I+MAP ILA QL+ E K + P + FVS Sbjct: 241 RIVMGDVGCGKTMVILASVILAYPQKSILMAPTTILAKQLFEEAKKYLPKHINISFVS 298 >gi|170086129|ref|XP_001874288.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651840|gb|EDR16080.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1307 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+I + G+++VLV + EGLDI E + DADK + T ++Q GR Sbjct: 625 EQLEVINKFKAGEYNVLVATCIGEEGLDIGEIDVTVCYDADK-----APTRMVQRFGRTG 679 Query: 680 R 680 R Sbjct: 680 R 680 >gi|156379595|ref|XP_001631542.1| predicted protein [Nematostella vectensis] gi|156218584|gb|EDO39479.1| predicted protein [Nematostella vectensis] Length = 78 Score = 43.9 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ I++ R G+ +L+ ++L EGLD+P C LV D+ + SL+Q+ GRA+ Sbjct: 6 EQEVILKSFRTGRIKLLISTSVLEEGLDVPVCNLVVRFDSTM-----NLKSLVQSRGRAS 60 Query: 680 RNVNSKVIL 688 R +S ++ Sbjct: 61 RRSDSHFVV 69 >gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens] gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens] gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens] Length = 819 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 382 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 493 >gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae 2603V/R] gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 2603V/R] Length = 528 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|73966205|ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A, isoform 1 isoform 4 [Canis familiaris] Length = 351 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 226 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 285 Query: 651 CGLV 654 LV Sbjct: 286 VSLV 289 >gi|328698487|ref|XP_001948012.2| PREDICTED: hypothetical protein LOC100166297 [Acyrthosiphon pisum] Length = 2033 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E++ + G F+VL+ ++ EGLDI + L+ L+A+K S +Q +GR Sbjct: 575 EQLEVMSRFKSGDFNVLIATSVAEEGLDIGDVDLIICLEANK-----SPIKFVQRLGRTG 629 Query: 680 RNVNSKVI 687 R + K I Sbjct: 630 RKRSGKCI 637 >gi|327272183|ref|XP_003220865.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Anolis carolinensis] Length = 680 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+ +I++ R G ++L ++ EGLD+PEC +V + G + ++ +++Q GR A Sbjct: 420 EQQNVIQNFRKGALNLLFSTSVAEEGLDVPECNIVV-----RYGLMTNEIAMMQARGR-A 473 Query: 680 RNVNSKVILYADTITKSI 697 R NS + A T +K + Sbjct: 474 RAPNSICSVLAKTNSKEV 491 >gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF 23] Length = 402 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 260 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 315 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 360 >gi|313901321|ref|ZP_07834808.1| helicase C-terminal domain protein [Clostridium sp. HGF2] gi|312953929|gb|EFR35610.1| helicase C-terminal domain protein [Clostridium sp. HGF2] Length = 384 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 143/360 (39%), Gaps = 55/360 (15%) Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE--LEKEGRLLEA-- 419 YPLT + R I +Y N H + A K EL M I+ L K R+ A Sbjct: 56 YPLTPAQKRCASEIVMYLNHH---QDVLVYAACGAGKTELVMEAIKQSLAKGCRVGFAIS 112 Query: 420 -----QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474 + +R+ + L C E Y+ G L+ Y LL +D Sbjct: 113 RRQVVLEIRERMQDAFKNLNVIAVC---EGYTEVTEGDLIICTMHQLYRYHAAFDLLIMD 169 Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 E P YRG+ A L + + +C+ NR + ++ATP Sbjct: 170 EVD-AFP-----YRGN----AVLKQIA--IHACIGNR--------------LYLTATPDE 203 Query: 535 ---WELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589 +++Q + +VE RP G L+ P V+ Q+ + + ++ + L+ V Sbjct: 204 EMLSDVKQGKLQMVELFQRPHGYPLIVPDVKAALPSIQLYQLIRFLKRQKKEAAQTLVFV 263 Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T +AE ++ +L I R KT ++ +I++ +++ L+ +L G+ I Sbjct: 264 PTIALAEQMSRWL---RIVFRCTSFTSKTKDKEKILKRFHEKRYECLIATTVLERGITIK 320 Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706 +V I AD F ++ SLIQ IGR RN+ K + T+ I+ I R Sbjct: 321 GVHVV-IYHADHPVF--NEASLIQMIGRVGRNIEMPTGKGLFLCTRKTRDIERCIQALQR 377 >gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis W23144] gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis W23144] Length = 1166 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 25/186 (13%) Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 +K+G ++ L+ LV Y+R+ + G F + G I+I+P L R+ +F + Sbjct: 138 IKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195 Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416 ++ I +F T + N+ ++I S Y+ + +++++ ELK + Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIIT----DEVIQHLQNELK----------KA 241 Query: 417 LEAQR--LEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFEYIPEDS 469 E R +E+ + DL+ ET S + E+ + L R E P TL +Y +++ Sbjct: 242 YEYTRPKIEKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYEKPSTLIDYFQKNA 299 Query: 470 LLFVDE 475 ++ VDE Sbjct: 300 IVVVDE 305 >gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) isoform 14 [Canis familiaris] Length = 614 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + ++ GLD+ + V D + S + IGR AR+ N Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435 >gi|323438789|gb|EGA96528.1| putative helicase [Staphylococcus aureus O11] Length = 304 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 86 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 145 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 146 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 183 >gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 637 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 ++ G IL+ V T+R A+ L YLY + +V +H + +R + R G+ VLV Sbjct: 428 SEAGTLILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVA 487 Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 + GLDIP V D +D E ++ +T + +G A N K Sbjct: 488 TAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 538 >gi|224127806|ref|XP_002329182.1| predicted protein [Populus trichocarpa] gi|222870963|gb|EEF08094.1| predicted protein [Populus trichocarpa] Length = 531 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V + AE+L L +IRV +HS + +R +I D R GK VL+ ++L Sbjct: 377 MLIFVQSIERAEELYGELKFDSIRVGVIHSNLSQEQRESVIDDFRAGKTWVLIATDVLGR 436 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ +++ D F S I IGR+ R Sbjct: 437 GMDFK--GVKCVINYD---FPDCAASYIHRIGRSGR 467 >gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase MOI) [Equus caballus] Length = 1785 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 354 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 406 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 407 YRSYVQSKGR-ARAPISNYIMLADT 430 >gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus norvegicus] Length = 652 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + ++ GLD+ + V D + S + IGR AR+ N Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435 >gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) isoform 1 [Canis familiaris] Length = 664 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 348 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 407 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 408 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 461 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 462 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 488 >gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 734 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q+GL IL+ V +K A +L + L NI V +HS+ +R I++ R GK VL+ Sbjct: 484 QKGLEPPILIFVQSKERATELFQELIFDNINVDVIHSDRTQQQRDTIVQRFRSGKIWVLI 543 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D V D F + S + IGR R Sbjct: 544 CTELMARGMDFKGVNYVINFD-----FPNTIASYVHRIGRTGR 581 >gi|238854795|ref|ZP_04645125.1| primosomal protein N' [Lactobacillus jensenii 269-3] gi|282933873|ref|ZP_06339221.1| primosomal protein N' [Lactobacillus jensenii 208-1] gi|238832585|gb|EEQ24892.1| primosomal protein N' [Lactobacillus jensenii 269-3] gi|281301962|gb|EFA94216.1| primosomal protein N' [Lactobacillus jensenii 208-1] Length = 797 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 15/106 (14%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641 L T+++ E+LTE L R + +V T R EI+ G D+L+G + Sbjct: 553 FLGTGTQKVEEELTELL----PGARVLRMDVDTTRRKGSYKEILDKFGAGNADILLGTQM 608 Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 + +GLD P LV +++AD +L ++ L Q GRA R Sbjct: 609 IAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGR 654 >gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Hydra magnipapillata] Length = 790 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G +L+ V K +E++ L E+ + +H + ER +++ + +F +LV ++ Sbjct: 521 GGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLILVATDV 580 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 GLDIP V D R T+ IGR R K I Y + A Sbjct: 581 AARGLDIPSIKTVINYDV-----ARDITTHTHRIGRTGR-AGEKGIAYTLITPQDTHFAA 634 Query: 702 D 702 D Sbjct: 635 D 635 >gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 575 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V K DL L+E V +H + ER +++ + G+ VL+ ++ Sbjct: 387 KIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRVLIATDVAA 446 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLD+ + G+V ++ D + + IGR R N Sbjct: 447 RGLDVKDVGVV--VNYDMPSGVNGVEDYVHRIGRTGRAGN 484 >gi|148997750|ref|ZP_01825314.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP11-BS70] gi|148999065|ref|ZP_01826496.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP11-BS70] gi|168575113|ref|ZP_02721076.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016] gi|307068324|ref|YP_003877290.1| RecG-like helicase [Streptococcus pneumoniae AP200] gi|147755104|gb|EDK62160.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP11-BS70] gi|147756249|gb|EDK63291.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus pneumoniae SP11-BS70] gi|183578801|gb|EDT99329.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016] gi|306409861|gb|ADM85288.1| RecG-like helicase [Streptococcus pneumoniae AP200] Length = 671 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 ++E+LT + + V +H +K+ E+ +I++D + + D+LV ++ G+++P + Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERETDILVSTTVIEVGVNVPNATV 542 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 + I+DAD+ G + L Q GR R + S +L A+ T S Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582 >gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans] Length = 399 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD NL Q + + TK L + + ++N V MH ++K ER I+ D R Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + I IGR+ R Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358 >gi|61367710|gb|AAX43036.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic construct] Length = 407 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis M01-240355] Length = 1374 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 1065 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1121 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1122 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1157 >gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae NEM316] gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909] gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 18RS21] gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae H36B] gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae CJB111] gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316] gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae A909] gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 18RS21] gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae CJB111] gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae H36B] Length = 528 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R R +H ++ +R+ +IRD + D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332 >gi|332638230|ref|ZP_08417093.1| ATP-dependent DNA helicase RecG [Weissella cibaria KACC 11862] Length = 678 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +L+EY + RV +H + E+ +++ + +F VLV ++ G+D+P ++ I Sbjct: 490 ELSEY-FAPTYRVGLLHGRLSNQEKEDVMAAFKANEFQVLVSTTVIEVGVDVPNSTVMLI 548 Query: 657 LDADKEGFLRSKTSLIQTIGRAARN 681 LDAD+ G + L Q GR R Sbjct: 549 LDADRFGL----SQLHQLRGRVGRG 569 >gi|308455475|ref|XP_003090271.1| hypothetical protein CRE_17660 [Caenorhabditis remanei] gi|308265015|gb|EFP08968.1| hypothetical protein CRE_17660 [Caenorhabditis remanei] Length = 637 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (12%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +++E +R G+ VLV ++ EGLDI +C LV K + ++ + +Q GR Sbjct: 439 KQMEKLRKFASGEIRVLVATSVAEEGLDIAKCNLVI-----KYNYATNEIAHVQRRGR-G 492 Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIM----EVI 733 R +NSK IL IT SI L E R ++ + + I NP + +E + + Sbjct: 493 RAINSKCIL----ITNSIPLRDQEGANRDKENMMNKALLTIQSNPFAFREAVTSEASNIW 548 Query: 734 DPILLEDA 741 + IL EDA Sbjct: 549 NRILREDA 556 >gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus] Length = 404 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + L+E + ER+ + MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 279 TRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLITTDLLARGIDVQQ 338 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IGR+ R Sbjct: 339 VSLVINYD-----LPTNRENYIHRIGRSGR 363 >gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704] gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704] Length = 670 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+E+L +N +H + ER + R + +LV + G Sbjct: 445 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNARCPILVATAVAARG 504 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 505 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 540 >gi|293333116|ref|NP_001169206.1| hypothetical protein LOC100383059 [Zea mays] gi|223975507|gb|ACN31941.1| unknown [Zea mays] Length = 364 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V +K A++L + L +IRV +H+++ +R + + +LR GK VL+ ++ Sbjct: 212 VLIFVQSKERAKELYKELAFDDIRVDVIHADLSEQQRQDAVDNLRAGKTWVLIATEVIAR 271 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+D G+ ++++ D F S + I IGR+ R Sbjct: 272 GMDFK--GVASVINYD---FPESAAAYIHRIGRSGR 302 >gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1194 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 38/221 (17%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208 P G +PA A + +G+ + ++L V SG+ A+ R PN I AQ Sbjct: 51 PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104 Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 L E PH E PR DT + + R++H + + Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDPMF 143 Query: 269 RNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 I+V + + G+G VE + +G+ + E L++ Y R D+ Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198 Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + RG F V G +++FP R+ FG++I+ I EF+ Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238 >gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo sapiens] Length = 828 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 391 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 450 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 451 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 502 >gi|317010106|gb|ADU80686.1| ATP-dependent DNA helicase RecG [Helicobacter pylori India7] Length = 621 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTNDQQNAIKEIQSDLTSPIACKRLIVGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|300120302|emb|CBK19856.2| unnamed protein product [Blastocystis hominis] Length = 563 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 585 ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +L+ V +K A L TE Y+R + V +HS++ L R I R G+ VL+ +LL Sbjct: 371 MLVFVQSKDRARQLYTELAYDR-VNVDVIHSDLSNLARTAAINRFRTGETWVLIATDLLG 429 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD GL +++ D F +S I IGR R Sbjct: 430 RGLDF--LGLNTVVNYD---FPQSGVDYIHRIGRTGR 461 >gi|298369030|ref|ZP_06980348.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014 str. F0314] gi|298283033|gb|EFI24520.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014 str. F0314] Length = 513 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 >gi|227891526|ref|ZP_04009331.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741] gi|227866673|gb|EEJ74094.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741] Length = 950 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVR 610 VD +R +A +V+ + D+++ GL++ V R E +L + + + + Sbjct: 407 VDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAK 466 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 + ++ R ++R+L GK + ++ +NL EG+DIP V +L +S Sbjct: 467 ALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRNT-----QSSIV 521 Query: 671 LIQTIGRAAR 680 IQ +GR R Sbjct: 522 FIQQLGRGLR 531 >gi|225076550|ref|ZP_03719749.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens NRL30031/H210] gi|224952113|gb|EEG33322.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens NRL30031/H210] Length = 730 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ + G +VLV ++ G+D+P L+ Sbjct: 546 EQLQAALPELNIGL--VHGRMKAAEKAEVMAEFAAGCLNVLVATTVIEVGVDVPNAALMV 603 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 604 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 641 >gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335] gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335] Length = 1177 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 35/207 (16%) Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV + + + VE++ +++ +G + K+L SL K Y++ + G + Sbjct: 131 AIVTTERALQPHLPPVEAFRPYCLEITLGMELNLKDLGLSLAKLGYEKVSSVEVEGQWSQ 190 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391 GD I++FP E + R+ +FG+++E + EF P + + +E + Sbjct: 191 RGDIIDVFPVAAE-LPVRMELFGDELERLREFDPANQRSLDKIEAL-------------- 235 Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML---ETTGSCQSIENYSRY 448 L T Y G L+ + E+ + DL ET + IE R+ Sbjct: 236 LLTTTDY---------------GPLILSALEEKELLEDLLTEESQETFAATGKIEGARRF 280 Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + E P ++ +Y+P+D+L+ +DE Sbjct: 281 MGLAF--ESPASILDYLPDDTLVVIDE 305 >gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica] Length = 772 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 456 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 515 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 516 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 569 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 570 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 596 >gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens] gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct] gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct] gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo sapiens] gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens] gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct] Length = 652 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474 >gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus] gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName: Full=DEAD box protein 17 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus] Length = 650 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + ++ GLD+ + V D + S + IGR AR+ N Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435 >gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus] gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus] gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus] gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus musculus] Length = 652 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + ++ GLD+ + V D + S + IGR AR+ N Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435 >gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca mulatta] gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo abelii] gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan troglodytes] gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName: Full=DEAD box protein 17; AltName: Full=DEAD box protein p72; AltName: Full=RNA-dependent helicase p72 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens] gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens] gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo sapiens] Length = 650 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474 >gi|332995097|gb|AEF05152.1| ATP-dependent DNA helicase RecG [Alteromonas sp. SN2] Length = 690 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 589 VLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 VL + AED L L E N+ + +H +K E+++++ D + G+ D+LV ++ Sbjct: 495 VLECQAAEDAAVILRTALPELNVGL--VHGRLKPAEKLQVMADFKAGELDLLVATTVIEV 552 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSK-VILYADTITKS 696 G+D+P ++ I + ++ G L Q GR R V S+ V++Y ++K+ Sbjct: 553 GVDVPNASIMIIENPERLGL----AQLHQLRGRVGRGAVESQCVLMYQSPLSKT 602 >gi|330826895|ref|YP_004390198.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601] gi|329312267|gb|AEB86682.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601] Length = 705 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 DL+E L + V +HS + + E+ ++ + + G+ VLV ++ G+D+P L+ I Sbjct: 518 DLSEALP--GVTVGLLHSRMPSAEKKAVMEEFKSGRMGVLVSTTVIEVGVDVPNASLMVI 575 Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL 712 A++ G + L Q GR R + V+LY+ + + ET R R K + Sbjct: 576 EHAERFGL----SQLHQLRGRVGRGAAASACVLLYSTGDSGR----LGETARDRLKAM 625 >gi|289624078|ref|ZP_06457032.1| transcription-repair coupling factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 578 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ A +R +++ + A +L E K F P V +F + YD Sbjct: 21 LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + + L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE++++ L R L+ Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220 Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L + + IE Y E TLF+Y+ Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275 Query: 466 PEDSLLF 472 P+D+ +F Sbjct: 276 PQDTQVF 282 >gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus caballus] Length = 791 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 475 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 534 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 535 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 588 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 589 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 615 >gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767] gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii] Length = 399 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK LT+ + + N V MH ++K ER I+ D R Sbjct: 258 DLYDSLTIT-----QAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFR 312 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D DKE + + IGR+ R Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------VHRIGRSGR 358 >gi|118400980|ref|XP_001032811.1| Helicase conserved C-terminal domain containing protein [Tetrahymena thermophila] gi|89287156|gb|EAR85148.1| Helicase conserved C-terminal domain containing protein [Tetrahymena thermophila SB210] Length = 481 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 8/114 (7%) Query: 568 VEDVY-DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 ++D+ D+I + Q RI++ V ++ +E + ++L + +I+ H+ + T +RI+ + Sbjct: 313 IQDILVDQIKKSTSQ--RIIVFVQSQASSESIAKHLQDHDIKALSFHANLNTEQRIDTLA 370 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + GK VLV +L GLD V D F S + +GR R Sbjct: 371 NFDEGKVRVLVSTDLASRGLDFQNVDHVIQFD-----FALDAVSFLHRVGRTCR 419 >gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533] gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533] Length = 484 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVSHVYNYD---IPQDPNSYVHRIGRTGR 332 >gi|332296036|ref|YP_004437959.1| primosomal protein N' [Thermodesulfobium narugense DSM 14796] gi|332179139|gb|AEE14828.1| primosomal protein N' [Thermodesulfobium narugense DSM 14796] Length = 731 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 10/109 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIP 649 ++R+AE+L + N+ R V T +++ +++D+ GK D LVG ++ +GL+ P Sbjct: 491 SQRIAEELKNLFPDANV-ARIDSDSVNTYSKLKAVLKDIADGKIDFLVGTQIITKGLNFP 549 Query: 650 ECGLVAI--LD-----ADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690 + V I L+ D F + L+Q GRA R +V+ KV++ A Sbjct: 550 KINFVGIPFLEPLTSIPDFRSFEKLYQLLVQVTGRAGRYSVDGKVVIQA 598 >gi|312194934|ref|YP_004014995.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] gi|311226270|gb|ADP79125.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] Length = 785 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%) Query: 596 EDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 E+L +L + +R+ +H + + ++ G+ DVLV ++ G+D+P Sbjct: 588 EELLPWLADGPLAGLRLAALHGRLPADAKDSVMTRFAAGELDVLVATTVIEVGVDVPNAT 647 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++AI+DAD+ G + L Q GR R + V L Sbjct: 648 VIAIMDADRFGV----SQLHQLRGRVGRGQGAGVCL 679 >gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18] gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18] gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis ES14902] Length = 1375 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158 >gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102] Length = 402 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + LT+ + E N V MH ++ ER I++D R Sbjct: 260 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D +++E + I IGR+ R Sbjct: 315 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 360 >gi|312215634|emb|CBX95586.1| similar to eukaryotic initiation factor 4A-I [Leptosphaeria maculans] Length = 396 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L R+ V MH ++ ++R I+++ R G VL+ +LL G+D+ + Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQIQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 331 VSLVINYDLPANRENYI 347 >gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa] gi|307715909|gb|ADN88174.1| dicer [Sus scrofa] Length = 1915 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 491 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 543 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 544 YRSYVQSKGRARAPISNYVML-ADT 567 >gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8] gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8] Length = 652 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 578 AAQQGLRILLTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 AA G + LT++ TKRMA+ L ++L + +H + ER + R G+ Sbjct: 423 AANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHGDRTQREREMALNTFRSGRTP 482 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 +LV + GLDIP + +++ D G + + IGR R N+ V Sbjct: 483 ILVATAVAARGLDIPN--VTHVVNYDLPGDI---DDYVHRIGRTGRAGNTGV 529 >gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13] gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13] Length = 1159 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/296 (18%), Positives = 130/296 (43%), Gaps = 35/296 (11%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 +TG+ A+++E P +++AP+ A +L E + F + V+ ++ Sbjct: 32 LTGAACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQF-----TDQMVTTLPDWETL 86 Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 Y D++ + I+ ++ + H T I++ + + + E + Sbjct: 87 PY----DSFSPHQEIISARLSSLYHLPTMV----RGVIILPVNTLMQRVCPHEFLHGHAL 138 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 +K G + +++L + L + Y+ D + G F G ++++P E+ +R+ F + Sbjct: 139 VMKKGQRLSREKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 197 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415 +I+ + F T + + VE I + + PT TA++ + + + + E+ + Sbjct: 198 EIDSLRIFDVDTQRTLSEVEAINLLPAHEF----PTDKTAIELFRSQWREQF-EVRR--- 249 Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471 +A+ + Q++ + G+ + Y + L +P P+LF Y+P ++L+ Sbjct: 250 --DAEHIYQQV--------SKGTWPAGIEYWQPLFF---SQPLPSLFSYLPANTLI 292 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ AE L E + E I + + + LER+ + D +F+VLV ++ G+DIP Sbjct: 833 EKAAEKLAELVPEARIAIGHGQMRERDLERV--MNDFHHQRFNVLVCTTIIETGIDIPSA 890 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I AD+ G L Q GR R+ Sbjct: 891 NTIIIERADRFGL----AQLHQLRGRVGRS 916 >gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106] gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106] Length = 1147 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331 IV + S + VE++ + LK G + + K+L L Y+R + G + Sbjct: 125 AIVATERSLQPHLPPVEAFKPYCLTLKQGTTQDSKQLDEQLATLGYERVSLVETEGQWSR 184 Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 GD ++IFP E + R+ FG+++E I EF P T + + + Sbjct: 185 RGDIVDIFPVAAE-LPVRLEWFGDELERIREFDPTTQRSLDKI 226 >gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum] Length = 580 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L +L E+NI+ +H + ER + + D + G VLV + Sbjct: 411 RTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAA 470 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 GLDI + V D K S + IGR R N Sbjct: 471 RGLDIKDVQHVINYDLPK-----SIDEYVHRIGRTGRVGN 505 >gi|31077172|sp|P29562|IF4A1_RABIT RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I; Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase eIF4A-1 Length = 398 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 273 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 332 Query: 651 CGLV 654 LV Sbjct: 333 VSLV 336 >gi|317014937|gb|ADU82373.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Gambia94/24] Length = 623 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|301619410|ref|XP_002939087.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Xenopus (Silurana) tropicalis] Length = 624 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+ E+I R G+ ++LV ++ EGLDIP+C +V + G + ++ +++Q GRA Sbjct: 422 EQREVIEKFRKGELNLLVSTSVAEEGLDIPQCNVVV-----RYGLMTNEIAMVQARGRA 475 >gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4] gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4] Length = 1165 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 60/309 (19%), Positives = 126/309 (40%), Gaps = 27/309 (8%) Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 +EK LL GV + + +++ QRP I++ ++ A L E N P V F Sbjct: 22 KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286 P T T + +++++ ++ + R +V++ + Y + Sbjct: 81 -------PVDATIATQTAVASPDELSQRLQTLKFLTEK----RAGIVVITPQALQYKLSD 129 Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 + + K + EL + + Y+R++I G F GD ++++P E+ Sbjct: 130 PRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN- 188 Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 R+ FG++++ + EF T + + + + I V L+ A++ IK+++ Sbjct: 189 PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNES 248 Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 + E ++ +++LE G ENY+ + P L +Y+ Sbjct: 249 IANEEN---------VKNYFVKAIDLLEADGLP---ENYAFLIDYLLP--KSFNLVDYLD 294 Query: 467 EDSLLFVDE 475 ++ LL D+ Sbjct: 295 KNGLLLFDD 303 >gi|227529544|ref|ZP_03959593.1| ATP-dependent DNA helicase/translocase [Lactobacillus vaginalis ATCC 49540] gi|227350629|gb|EEJ40920.1| ATP-dependent DNA helicase/translocase [Lactobacillus vaginalis ATCC 49540] Length = 486 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 57/101 (56%), Gaps = 8/101 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 +R+E ++ +R GK++ L+ ++L G+ PE V +L AD + F S ++L+Q GRA Sbjct: 389 KRLEKVQQMREGKYEFLITTSILERGVTFPEID-VFVLGADDQVF--SSSALVQIAGRAG 445 Query: 680 RNVN---SKVILYADTITKSIQLAIDETT--RRREKQLEHN 715 R+ + KV+ + + ++ ++ A + R+ ++L H Sbjct: 446 RSASRPTGKVMFWIQSYSRQVREAQRQIAYMNRKGRRLLHG 486 >gi|254524632|ref|ZP_05136687.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14] gi|219722223|gb|EED40748.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14] Length = 703 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E++ + + G+ D+LV ++ G+D+P L+ I +A++ G Sbjct: 527 GVRVGLVHGRLKAAEKLATMVAFKTGEIDLLVATTVIEVGVDVPNASLMVIENAERLGL- 585 Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTITK 695 L Q GR R V+ V+LY +++ Sbjct: 586 ---AQLHQLRGRVGRGSAVSRCVLLYQAPLSQ 614 >gi|254172456|ref|ZP_04879131.1| DNA repair protein Rad25 [Thermococcus sp. AM4] gi|214033385|gb|EEB74212.1| DNA repair protein Rad25 [Thermococcus sp. AM4] Length = 462 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 34/185 (18%) Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568 W +R I + A G E + E +IR L P E+ + + + Sbjct: 232 WRRVRGEEIKIEAVVGPIIYE----VRAEDLIREGFLAKPRFEVITYESSMPSFSERYKE 287 Query: 569 --EDVY---DEINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 EDV DE N A ++G R+L+ V + L E L + I+ ++ S+ Sbjct: 288 LYEDVVMNNDERNRAIVAKAKELVRKGHRVLIDVKRIEHGKILKEMLEKEGIKAEFLSSQ 347 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R E++ + G+ VL+ LL+EG+DIPE + + K S IQTI Sbjct: 348 SQN--RWEVLEAYKNGEIPVLIS-TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTI 399 Query: 676 GRAAR 680 GRA R Sbjct: 400 GRALR 404 >gi|198273896|ref|ZP_03206428.1| hypothetical protein BACPLE_00030 [Bacteroides plebeius DSM 17135] gi|198272974|gb|EDY97243.1| hypothetical protein BACPLE_00030 [Bacteroides plebeius DSM 17135] Length = 820 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 10/100 (10%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 615 IINDFEEGKTDILIGTQMISKGLDFDRVSVVGILNADSMMNYPDFRSYERAFQLMAQVAG 674 Query: 677 RAAR-NVNSKVILYADTITKSI--QLAIDETTRRREKQLE 713 RA R N V+L + + Q+ ++ TR ++Q+E Sbjct: 675 RAGRKNKQGLVVLQTKSPENPLIHQIMANDYTRLYQEQME 714 >gi|269468391|gb|EEZ80056.1| recG-like helicase [uncultured SUP05 cluster bacterium] Length = 688 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%) Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 VL A + YL E N+ V +H ++ E+ EI+R K DVLV ++ G+ Sbjct: 492 VLRAESAINTHHYLQENLPNLSVVLIHGKMNKDEKSEIMRQFSANKIDVLVATTVIEVGV 551 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++P L+ I ++++ G L Q GR R ++ + + Sbjct: 552 NVPNASLMVIENSERLGL----AQLHQLRGRVGRGADASICI 589 >gi|255528251|ref|ZP_05395069.1| ATP-dependent DNA helicase, RecQ family [Clostridium carboxidivorans P7] gi|296188052|ref|ZP_06856444.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Clostridium carboxidivorans P7] gi|255508054|gb|EET84476.1| ATP-dependent DNA helicase, RecQ family [Clostridium carboxidivorans P7] gi|296047178|gb|EFG86620.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Clostridium carboxidivorans P7] Length = 666 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 25/191 (13%) Query: 523 PTTIVVSATPGSWEL-EQCQGIIVEQ--IIRPTGLVDPPVEIRSAR----TQVEDVYDEI 575 P T+ ++AT S E+ + C +++ +I+ L+ + ++ + + ED + E+ Sbjct: 187 PITLGLTATLNSKEITDICNDFRIDKDNVIKDDALIRSEIALKVLKFENEKEKEDKFWEL 246 Query: 576 NLAAQQGLRILLTVLTK---RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 L + +IL+ + K R E+LT+ ER + H ++ + +R EII + Sbjct: 247 -LNIHKNEKILVYLYRKYHQRGVENLTKDALERGFKATGFHGDMSSKDRQEIINRYKNND 305 Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFL--RSKTSLIQTIGRAARNV--NSKVIL 688 DV+ N G+DIP+ +V F+ S Q IGR AR++ + +L Sbjct: 306 IDVIFATNAFGMGIDIPDIKVVI-------HFMIPESVEQYYQEIGRGARDIPAANAYVL 358 Query: 689 YADTITKSIQL 699 Y + K+IQ+ Sbjct: 359 YTN---KNIQV 366 >gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia] Length = 532 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TK+ EDL YL E +H + +R ++++ + K +L ++ Sbjct: 316 KVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCATDVAS 375 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + LV D F + + IGR R Sbjct: 376 RGLDVRDISLVINYD-----FPNQIDNYVHRIGRTGR 407 >gi|124025499|ref|YP_001014615.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. NATL1A] gi|123960567|gb|ABM75350.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. NATL1A] Length = 846 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 TE E N+ + +H ++K++E+ E+I++ K D+LV ++ G+D+P ++ I D Sbjct: 660 TEIFSEFNVEL--LHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIED 717 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690 +D+ G L Q GR R L + Sbjct: 718 SDRFGL----AQLHQLRGRVGRGATKSYCLLS 745 >gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) isoform 13 [Canis familiaris] Length = 624 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 308 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 367 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + ++ GLD+ + V D + S + IGR AR+ N Sbjct: 368 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 409 >gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica] Length = 781 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 14/149 (9%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 IL+ V TK+ A+ L +L + V +H + +ER + R G+ +LV + Sbjct: 439 ILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAAR 498 Query: 645 GLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAA-----RNVNSKVILY-----A 690 GLDIP V D +D E ++ +T + GRA +N N + L A Sbjct: 499 GLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEA 558 Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHN 719 + I A+ + +R +NK+HN Sbjct: 559 NQIVPQWLSALADELKRNSTMGSNNKRHN 587 >gi|281352202|gb|EFB27786.1| hypothetical protein PANDA_013869 [Ailuropoda melanoleuca] Length = 400 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 275 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 334 Query: 651 CGLV 654 LV Sbjct: 335 VSLV 338 >gi|261278544|pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 39 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 98 Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680 +DIP +V D A+ + + I IGR R Sbjct: 99 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 134 >gi|254409584|ref|ZP_05023365.1| Type III restriction enzyme, res subunit family [Microcoleus chthonoplastes PCC 7420] gi|196183581|gb|EDX78564.1| Type III restriction enzyme, res subunit family [Microcoleus chthonoplastes PCC 7420] Length = 505 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 16/127 (12%) Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L + LR+L ++ K E + T Y + + + + ER EI+ Sbjct: 315 EIALGTEGKLRVLADLVAKHYPERILVFTNDNATVYRISQELLIPAITHHTPVKERHEIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 + R G + +LV ++L EG+D+P+ + IL S+ +Q +GR R + Sbjct: 375 QRFREGDYKILVASHVLNEGVDVPDARVAIILSGTG-----SEREYVQRLGRVLRKGTDQ 429 Query: 683 NSKVILY 689 N ILY Sbjct: 430 NKLAILY 436 >gi|320590875|gb|EFX03318.1| ATP-dependent RNA helicase dbp3 [Grosmannia clavigera kw1407] Length = 541 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 RIL+ L K+ A + +L + +RV +H +++ +R + + G+ VLV ++ Sbjct: 379 RILVFCLYKKEAVRVENFLQGQGVRVCSIHGDLRQEQRTRSLEAFKTGQTPVLVATDVAA 438 Query: 644 EGLDIPECGLV 654 GLDIPE LV Sbjct: 439 RGLDIPEVKLV 449 >gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus] Length = 1922 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566 >gi|302383040|ref|YP_003818863.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193668|gb|ADL01240.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 696 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 14/124 (11%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A DL L NI + H ++ ER ++ D G+ VLV ++ G+D+P ++ Sbjct: 502 ARDLRRIL---NIEIGLAHGQMPGAEREAVMADFADGRLPVLVATTVVEVGVDVPNATIM 558 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL 712 I AD+ G L Q GR R S ++LY A+ ET R R + L Sbjct: 559 VIEHADRFGL----AQLHQLRGRVGRGAKSSACILLYGGQ-----DGALGETARERLETL 609 Query: 713 EHNK 716 + Sbjct: 610 RRTE 613 >gi|257097239|pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 41 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100 Query: 646 LDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680 +DIP V D ++ + I IGR R Sbjct: 101 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGR 136 >gi|229592861|ref|YP_002874980.1| putative ATP-dependent helicase [Pseudomonas fluorescens SBW25] gi|229364727|emb|CAY52698.1| putative ATP-dependent helicase [Pseudomonas fluorescens SBW25] Length = 1419 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 12/160 (7%) Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612 PPV + + A E VYD + A++ L+ V T+R+AE L +L ER V Sbjct: 250 PPVPLSAVMANDVWERVYDRLAELAREHRTTLIFVNTRRLAERLARHLSERLGKTAVAAH 309 Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672 H + R++ + L+ G+ VL+ L G+DI + LV + G S + Sbjct: 310 HGSLAKEMRLDAEQRLKGGELQVLIATASLELGIDIGDVDLVCQI-----GSPGSINGFL 364 Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709 Q +GR+ V K L+A T I+ A+ + RR E Sbjct: 365 QRVGRSRHQVGGTPKGRLFATTRDDLIECAALLDCVRRGE 404 >gi|221140387|ref|ZP_03564880.1| helicase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302752351|gb|ADL66528.1| DEAD/H helicase / Type III restriction enzyme, res subunit [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 953 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC 7420] gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC 7420] Length = 1192 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/229 (19%), Positives = 103/229 (44%), Gaps = 36/229 (15%) Query: 256 DRMRHSAT--RSLLERNDCIVVSSVSCIYG-------IGSVESYSQMIVQLKIGDSVEQK 306 D +RHS+T E N + V+ ++ + + V++++ + + G + + K Sbjct: 109 DLVRHSSTPDSGDTEENHSVTVNGLAIVATHAALQPHLPPVKAFAPYCLTINQGMTRDIK 168 Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366 ++ + L + Y R + + G + GD +++FP E + R+ FG+++E++ EF P Sbjct: 169 DIDNQLARLGYDRVPLVEMEGQWSRRGDIVDVFPVAAE-LPVRLEWFGDELEQLREFDPG 227 Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426 + + + +E + + P + A+ +AQ+++ + Sbjct: 228 SQRSLDKIEQLVLTPTDF----SPIITDALSDA------------------QAQQVQLHL 265 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 + + L G +E R+L E P +L +Y+P+++++ +DE Sbjct: 266 GEEEQALWQAGG--HLEGSRRFLG--IAFEQPASLLDYLPDNTVIAIDE 310 >gi|156544419|ref|XP_001607535.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Nasonia vitripennis] Length = 596 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q+GL +L+ V +K A++L + L I V +HS+ +R ++R R GK VL+ Sbjct: 381 QRGLTPPVLVFVQSKERAQELFKELIYDGINVDLIHSDRTQTQRDNVVRCFREGKIWVLI 440 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D LV D F S S I IGR R Sbjct: 441 CTELMGRGIDFIGVNLVINYD-----FPPSAISYIHRIGRTGR 478 >gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus] Length = 810 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 382 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 493 >gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus] gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer gi|38679195|gb|AAR26432.1| dicer [Bos taurus] Length = 1923 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GRA +++ V+L ADT Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566 >gi|29348161|ref|NP_811664.1| primosomal protein N' [Bacteroides thetaiotaomicron VPI-5482] gi|29340064|gb|AAO77858.1| primosomal protein N' (replication factor Y) [Bacteroides thetaiotaomicron VPI-5482] Length = 818 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694 >gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus leucogenys] Length = 644 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 326 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 385 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 386 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 439 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 440 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 466 >gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256] gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256] Length = 1158 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 849 RIGVAHRQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 905 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 906 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 941 >gi|90962424|ref|YP_536340.1| DNA/RNA helicase [Lactobacillus salivarius UCC118] gi|90821618|gb|ABE00257.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius UCC118] Length = 951 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVR 610 VD +R +A +V+ + D+++ GL++ V R E +L + + + + Sbjct: 408 VDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAK 467 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 + ++ R ++R+L GK + ++ +NL EG+DIP V +L +S Sbjct: 468 ALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRNT-----QSSIV 522 Query: 671 LIQTIGRAAR 680 IQ +GR R Sbjct: 523 FIQQLGRGLR 532 >gi|326634440|pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 gi|326634442|pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 And Ip6 Length = 188 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TK+ A L L V +H +++T ER +I D R G+ VL+ N+L G Sbjct: 40 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 99 Query: 646 LDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680 +DIP V D ++ + I IGR R Sbjct: 100 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGR 135 >gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis 961-5945] gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136] Length = 1375 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158 >gi|330795215|ref|XP_003285670.1| hypothetical protein DICPUDRAFT_149527 [Dictyostelium purpureum] gi|325084396|gb|EGC37825.1| hypothetical protein DICPUDRAFT_149527 [Dictyostelium purpureum] Length = 757 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 14/178 (7%) Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582 P I V ++ + E V+Q+++P +D P + + + D E+NL + Sbjct: 498 PLKIRVKSSSANQESSAIVSKNVKQVVKPIVDLDRPQYLTNFLKSIMD--KELNLRNRSL 555 Query: 583 LRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 + + + + + M + L R + +H ++K +ER +I D + GK ++V Sbjct: 556 ILVFVNTIKQAMPVLNIIDKLCVSYTGRKYKCSCIHGDMKQIERDAVINDFKSGKLTIIV 615 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTI 693 ++L G+ I V D F S I +GR R N + L+ +T+ Sbjct: 616 ATDILGRGIHINNLRFVINYD-----FPTSLEQYIHRVGRTGRQGNKGHALTLFTETV 668 >gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Callithrix jacchus] Length = 650 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474 >gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 507 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L + + +H ++ +R+E+++ + + D+LV ++ GLDI Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D S T I GRA + + + + I I++T RR + Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--KGIAVTFVNPIEMDYIRQIEQTNDRRMR 364 Query: 711 QL 712 L Sbjct: 365 AL 366 >gi|167465104|ref|ZP_02330193.1| DEAD/DEAH box helicase domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 376 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 164 TKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 221 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 222 SGVSHVINFD---LPQDPESYVHRIGRTGR 248 >gi|149540257|ref|XP_001511956.1| PREDICTED: similar to eukaryotic initiation factor 4AI [Ornithorhynchus anatinus] Length = 373 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 248 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 307 Query: 651 CGLV 654 LV Sbjct: 308 VSLV 311 >gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic construct] gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct] gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct] Length = 651 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474 >gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis mellifera] Length = 423 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R + LTE + R+ V MH +++ ER I+R R Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFR 336 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G VL+ +LL G+D+ + LV D +++E ++ Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374 >gi|83589747|ref|YP_429756.1| replication restart DNA helicase PriA [Moorella thermoacetica ATCC 39073] gi|83572661|gb|ABC19213.1| replication restart DNA helicase PriA [Moorella thermoacetica ATCC 39073] Length = 821 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 8/112 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF-----LRSKTS--LIQTI 675 EI R G D+LVG + G+D P LV +++AD + R +T L Q Sbjct: 618 EIYRTFAGGHADILVGTQTIARGMDFPGVTLVGVVNADLSLYQPDFRARERTFQLLTQVA 677 Query: 676 GRAARNVNSKVILYA-DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726 GRA R KVI+ + +I LA + RR +Q ++ P VK Sbjct: 678 GRAGRKSAGKVIIQTYNPADPAITLAAAQDYRRFYEQEIAGRRAGGYPPFVK 729 >gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum IMS101] gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum IMS101] Length = 1180 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 15/166 (9%) Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NI 607 RP P ++ +ART + E+N +G ++ V E+L L E Sbjct: 805 RPIKTHLAPYDLETARTAIRQ---ELN----RGGQVFYVVPRIEGIEELAGKLREMIPGA 857 Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H ++ E I+ G+ D+LV ++ GLDIP + I DA K G Sbjct: 858 RINIGHGKMDAAELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILIEDAQKFGL--- 914 Query: 668 KTSLIQTIGRAAR-NVNSKV-ILYADTITKSIQLAIDETTRRREKQ 711 + L Q GR R V + + Y T + I L D R R Q Sbjct: 915 -SQLYQLRGRVGRAGVQAHAWLFYPTTSSGGIALTDDAQKRLRAIQ 959 Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%) Query: 280 CIYGIGSVESYSQMIVQLKIG-----------DSVEQKELLSSLVKQQYKRQDIGIIRGT 328 C+ + S+ S S+ + KI DS+E+ L LV+ Y+ + G Sbjct: 153 CLTLMASIASSSKTLGSTKISNTDIEINHSESDSLERPSLEEKLVQMGYELVPLVETEGQ 212 Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 + GD I++FP E + R+ FG+++ +I EF P T + + + I Sbjct: 213 WSRRGDIIDVFPVASE-LPVRLEWFGDELRQIREFDPSTQRSLDKIAQI 260 >gi|269942063|emb|CBI50475.1| putative helicase [Staphylococcus aureus subsp. aureus TW20] Length = 953 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis] gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis] Length = 1388 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 T+Y+ N R++ + + EI+ + R GK +++V ++L EGLD+ C LV D Sbjct: 407 TQYIAGNNFRLQSQSRKTQN----EIVEEFREGKVNIIVATSILEEGLDVQSCNLVVRFD 462 Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 + +S IQ+ GR AR NS +L Sbjct: 463 PST-----TVSSFIQSRGR-ARMQNSDYLL 486 >gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon pisum] Length = 411 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++ + ++ T+R E LTE + + V MH E+ +R I+R R Sbjct: 270 DLYDTLSIT-----QAVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFR 324 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ +LL G+D+ + LV D ++ + I IGR+ R Sbjct: 325 SGSSRVLITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 370 >gi|94676686|ref|YP_588583.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219836|gb|ABF13995.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 699 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 K E++ YL E +++ +H +K E+ ++++ + GK +LV ++ G+DIP Sbjct: 508 VKATWEEIRSYLPE--LQIGLIHGRMKAQEKQQLMQAFQAGKIRLLVATTVIEVGVDIPN 565 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698 L+ I +A++ G L Q GR R + + V++Y + K+ Q Sbjct: 566 ASLIIIENAERLGL----AQLHQLRGRVGRAIVASHCVLIYNSPLNKAAQ 611 >gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19] gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19] Length = 741 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 595 AEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 A+ + +YL E I V + +K E++++I+ ++ G+ VLV ++ EGLD+P C Sbjct: 368 AKLIADYLKEIGISVGVLLGKEHMKEHEQLDVIKSIKRGECRVLVSTSVGEEGLDLPTCE 427 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRREK 710 V + + + S+ IQ IGR AR+ V + +L A ++ RRREK Sbjct: 428 EVVLYEP-----VPSEIRTIQRIGRTARDGAVGNAHVLVARGSFPTLDEIYFHVARRREK 482 Query: 711 QL 712 ++ Sbjct: 483 KM 484 >gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae] gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16] Length = 393 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LT+ + E N V MH +++ +R E++++ R G VL+ ++ GLD+P+ LV Sbjct: 275 LTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLDVPQVSLVINY 334 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 D ++ I IGR+ R Sbjct: 335 D-----LPNNRELYIHRIGRSGR 352 >gi|16803851|ref|NP_465336.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes EGD-e] gi|224501387|ref|ZP_03669694.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-561] gi|16411265|emb|CAC99889.1| lmo1811 [Listeria monocytogenes EGD-e] Length = 682 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MH ++ ++ +I+RD K D LV ++ G+++P ++ I DAD+ G L Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562 Query: 672 IQTIGRAARNVN-SKVILYADTITK 695 Q GR R V+ S IL AD T+ Sbjct: 563 HQLRGRVGRGVDQSYCILIADPKTE 587 >gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii DSM 271] Length = 607 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V T+ +DL+E L R + E+ +R + I L+ GK +++V ++ Sbjct: 273 VIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVATDVAAR 332 Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D +D E ++ I GRA R+ ++ IL+ + S+ I+ Sbjct: 333 GLDVERVTHVINYDIPSDTESYVHR----IGRTGRAGRSGDA--ILFVTSREMSMLRTIE 386 Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740 RR ++E IN + + + ++ D I ED Sbjct: 387 RAVRRSIDRMELPSAEMINDKRIAKFKQQISDVISTED 424 >gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190] Length = 1232 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 923 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 980 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015 >gi|298386156|ref|ZP_06995713.1| primosomal protein N' [Bacteroides sp. 1_1_14] gi|298261384|gb|EFI04251.1| primosomal protein N' [Bacteroides sp. 1_1_14] Length = 818 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694 >gi|271969938|ref|YP_003344134.1| type III restriction enzyme, res subunit [Streptosporangium roseum DSM 43021] gi|270513113|gb|ACZ91391.1| type III restriction enzyme, res subunit [Streptosporangium roseum DSM 43021] Length = 1028 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%) Query: 564 ARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622 AR + D++ +L A +GL ++V R A + E+ + ++ + ER Sbjct: 528 ARLVFNALLDKVSDLQAVRGLGFCVSV---RHAHFMAEFFTKAGLKSLAVDGSTDPAERR 584 Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 + LR GK L ++L EGLDIP+ + +L + S T +Q +GR R Sbjct: 585 AALLALRDGKVTFLFAVDLFNEGLDIPDVNTLLLLRPTE-----SATVFLQQLGRGLRRT 639 Query: 683 NSKVIL 688 +K +L Sbjct: 640 PNKDVL 645 >gi|255029718|ref|ZP_05301669.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes LO28] Length = 648 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MH ++ ++ +I+RD K D LV ++ G+++P ++ I DAD+ G L Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562 Query: 672 IQTIGRAARNVN-SKVILYADTITK 695 Q GR R V+ S IL AD T+ Sbjct: 563 HQLRGRVGRGVDQSYCILIADPKTE 587 >gi|254674059|emb|CBA09843.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275] Length = 488 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ E++ G+ +VLV ++ G+D+P L+ Sbjct: 304 EQLQTALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 361 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693 I A++ G L Q GR R V+L+A+ + Sbjct: 362 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 397 >gi|253569563|ref|ZP_04846973.1| primosomal protein N [Bacteroides sp. 1_1_6] gi|251841582|gb|EES69663.1| primosomal protein N [Bacteroides sp. 1_1_6] Length = 818 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694 >gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus] gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus] gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus] Length = 650 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474 >gi|149408137|ref|NP_001092258.1| RNA helicase LGP2 [Rattus norvegicus] Length = 678 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+I++ R GK ++LV ++ EGLDI +C +V + G L ++ S++Q GRA Sbjct: 422 EVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 472 >gi|17539846|ref|NP_501018.1| Dicer Related Helicase family member (drh-1) [Caenorhabditis elegans] gi|21703172|gb|AAM76083.1|AF480439_1 dicer-related helicase [Caenorhabditis elegans] gi|2662588|gb|AAB88350.1| Dicer related helicase protein 1 [Caenorhabditis elegans] Length = 1037 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 13/99 (13%) Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 S+ K +E++++ D G+ +LV ++ EGLD+PEC LV K + ++ + +Q Sbjct: 751 SKQKQMEKLKMFAD---GEIRILVSTSVAEEGLDVPECSLVI-----KYNYATNEIAHVQ 802 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 GR R +NS+ +L IT SI L E+ R ++ L Sbjct: 803 RRGR-GRALNSECVL----ITNSIALRDQESNNRDKESL 836 >gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus] gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus norvegicus] Length = 929 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|57650998|ref|YP_187294.1| helicase, putative [Staphylococcus aureus subsp. aureus COL] gi|87162160|ref|YP_495065.1| putative helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196426|ref|YP_501250.1| hypothetical protein SAOUHSC_02790 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222598|ref|YP_001333420.1| hypothetical protein NWMN_2386 [Staphylococcus aureus subsp. aureus str. Newman] gi|161510687|ref|YP_001576346.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451206|ref|ZP_05699239.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|282920480|ref|ZP_06328203.1| helicase [Staphylococcus aureus A9765] gi|284025507|ref|ZP_06379905.1| putative helicase [Staphylococcus aureus subsp. aureus 132] gi|294849036|ref|ZP_06789781.1| helicase [Staphylococcus aureus A9754] gi|304379685|ref|ZP_07362418.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285184|gb|AAW37278.1| helicase, putative [Staphylococcus aureus subsp. aureus COL] gi|87128134|gb|ABD22648.1| putative helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203984|gb|ABD31794.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375398|dbj|BAF68658.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160369496|gb|ABX30467.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860998|gb|EEV83813.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|282594426|gb|EFB99412.1| helicase [Staphylococcus aureus A9765] gi|294824415|gb|EFG40839.1| helicase [Staphylococcus aureus A9754] gi|304341861|gb|EFM07767.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196341|gb|EFU26694.1| helicase [Staphylococcus aureus subsp. aureus CGS01] gi|320139052|gb|EFW30935.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142618|gb|EFW34425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus MRSA177] gi|329315168|gb|AEB89581.1| Helicase [Staphylococcus aureus subsp. aureus T0131] gi|329726395|gb|EGG62859.1| helicase C-terminal domain protein [Staphylococcus aureus subsp. aureus 21189] Length = 953 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|288575749|ref|ZP_06393935.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996] gi|288567231|gb|EFC88791.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996] Length = 529 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 >gi|241889944|ref|ZP_04777242.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379] gi|241863566|gb|EER67950.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379] Length = 669 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVT 177 N +I INN KDI F+ + +G Q I +++ +++ K+ +LL G Sbjct: 230 NSRIENNRYCVGINN--KDINEFKNSLPFMLTGAQSRVIDEIVDDLNNPYKMDRLLQGDV 287 Query: 178 GSGKTFTMAKVIEAMQRPAI---VMAPNKILAAQLYSEFKNFF 217 GSGKT A + A + +MAP +ILA Q + F FF Sbjct: 288 GSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFF 330 >gi|149247861|ref|XP_001528318.1| hypothetical protein LELG_00838 [Lodderomyces elongisporus NRRL YB-4239] gi|146448272|gb|EDK42660.1| hypothetical protein LELG_00838 [Lodderomyces elongisporus NRRL YB-4239] Length = 760 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656 +L L I +Y+ E ER I+ D +LGK VL + + EG DIP + + Sbjct: 398 ELCSTLQSHGINAQYVTGETSKSERAAIVEDFKLGKIPVLCNVEVFTEGTDIPNIDSIIL 457 Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680 S+T + Q+IGR R Sbjct: 458 ARPT-----LSRTLVTQSIGRGLR 476 >gi|197118286|ref|YP_002138713.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem] gi|197087646|gb|ACH38917.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem] Length = 772 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 14/121 (11%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 +MAE L + ++ ++RV +H + E+ ++++ + G D+LV ++ G+D+P Sbjct: 576 QMAEHLAQDVFP-DLRVAVLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNAT 634 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 ++ I A++ G + L Q GR R ++ I LA D+ + +K+L Sbjct: 635 VMVIEHAERFGL----SQLHQLRGRVGRGSER---------SRCILLAGDKLSEDGQKRL 681 Query: 713 E 713 E Sbjct: 682 E 682 >gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] Length = 422 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ L + V MHS+++ +R ++ + + G+ ++LV +++ Sbjct: 246 RVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V L Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4] gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4] Length = 533 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L L R R +H ++ +R+ +++ + GK D+LV ++ GLDI Sbjct: 253 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVATDVAARGLDI-- 310 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 311 SGVTHVYNYD---IPQDPESYVHRIGRTGR 337 >gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC 13091] gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC 13091] Length = 1301 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252 +R +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ Sbjct: 33 KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91 Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 + ++ A D + V + + + V + LK G +++ L + L Sbjct: 92 Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140 Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 V Y + G F V G +++FP E + +R+ +F ++I+ I F T + I Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199 Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404 V I++ + PT + A K + + Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 992 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1048 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1049 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1084 >gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein-like [Pongo abelii] Length = 1967 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S LIQ +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLIQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVV 587 >gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon pisum] Length = 401 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 260 DLYDTLTIT-----QAVIFCSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFR 314 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 315 AGQTRVLITTDIWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 360 >gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi] gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi] Length = 754 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL + V +H ++K +R + + R G +LV + G Sbjct: 554 LVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARG 613 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 614 LDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDK 657 >gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum] gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum] Length = 404 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TKR + LTE + E N V MH ++ ER I+++ R Sbjct: 263 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFR 317 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ VL+ ++ G+D+ + LV D ++ I IGR+ R Sbjct: 318 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 363 >gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) isoform 5 [Canis familiaris] Length = 630 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 314 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 373 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 374 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 427 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 428 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 454 >gi|53715495|ref|YP_101487.1| primosomal protein N' [Bacteroides fragilis YCH46] gi|253566634|ref|ZP_04844087.1| primosomal protein N [Bacteroides sp. 3_2_5] gi|52218360|dbj|BAD50953.1| primosomal protein N' [Bacteroides fragilis YCH46] gi|251944806|gb|EES85281.1| primosomal protein N [Bacteroides sp. 3_2_5] gi|301164952|emb|CBW24513.1| putative primosomal protein N' [Bacteroides fragilis 638R] Length = 819 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 613 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 672 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 673 GRAGRKNKRGRVVLQTKSIDHPI 695 >gi|21284138|ref|NP_647226.1| hypothetical protein MW2409 [Staphylococcus aureus subsp. aureus MW2] gi|300910703|ref|ZP_07128153.1| helicase [Staphylococcus aureus subsp. aureus TCH70] gi|21205581|dbj|BAB96274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|300887683|gb|EFK82878.1| helicase [Staphylococcus aureus subsp. aureus TCH70] Length = 951 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM 3645] gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM 3645] Length = 1077 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 19/149 (12%) Query: 272 CIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330 I+V+S+ S + + S + + ++ +GD ++ +EL LV+ ++ + G F Sbjct: 127 AIIVTSIESLLQPVPSAANVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFS 186 Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA-------NS 383 + G +++F E A R+ +FG++IE I +F T + + +ET++I Sbjct: 187 LRGGILDVFAPDWEQPA-RIELFGDEIESIRQFEIGTQRSLHPLETVEITVLRYGKGQTG 245 Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEK 412 H+ PT + + LIELE+ Sbjct: 246 HFSDYLPTASACV----------LIELER 264 >gi|322705505|gb|EFY97090.1| DEAD/DEAH box RNA helicase [Metarhizium anisopliae ARSEF 23] Length = 650 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G+R ++ ++R ++L ++LY + V MHSE ER +R R G+ +L+ + Sbjct: 363 GVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRAGQAPILIATGV 422 Query: 642 LREGLDI 648 G+D+ Sbjct: 423 TARGIDV 429 >gi|302334111|gb|ADL24304.1| DEAD/H helicase / Type III restriction enzyme, res subunit [Staphylococcus aureus subsp. aureus JKD6159] Length = 953 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|253734082|ref|ZP_04868247.1| helicase [Staphylococcus aureus subsp. aureus TCH130] gi|253727777|gb|EES96506.1| helicase [Staphylococcus aureus subsp. aureus TCH130] Length = 953 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|227889885|ref|ZP_04007690.1| helicase [Lactobacillus johnsonii ATCC 33200] gi|227849329|gb|EEJ59415.1| helicase [Lactobacillus johnsonii ATCC 33200] Length = 970 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L L+ + AE+L E L ++ I+ + + + R E++ +L GK + +V +++ Sbjct: 457 LHGLIFCSRNKEAEELAESLRQKGIQAKSLSGKDDVETRDEVVEELEKGKINYIVTVDIF 516 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 EG+DIP + +L + K S +Q +GR R Sbjct: 517 NEGIDIPCINQIVLLRSTK-----SSIVFVQQLGRGLR 549 >gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis] Length = 660 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L E+LY V +H + ER + +R R G+ +LV + G Sbjct: 501 LVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVFRSGQCPILVATAVAARG 560 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D E ++ +T + +G A N K Sbjct: 561 LDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDK 604 >gi|149054239|gb|EDM06056.1| similar to hypothetical protein FLJ11354 (predicted), isoform CRA_a [Rattus norvegicus] gi|149054240|gb|EDM06057.1| similar to hypothetical protein FLJ11354 (predicted), isoform CRA_a [Rattus norvegicus] Length = 374 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678 E+I++ R GK ++LV ++ EGLDI +C +V + G L ++ S++Q GRA Sbjct: 118 EVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 168 >gi|109092953|ref|XP_001085678.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 7 [Macaca mulatta] Length = 406 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TQRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|323441629|gb|EGA99276.1| putative helicase [Staphylococcus aureus O46] Length = 953 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1148 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R+A L + E +I+V H ++ E +++ G DVLV ++ G+DIP Sbjct: 827 RIANQLRNIVPEASIQV--AHGQMSERELEQVMSSFVDGDIDVLVCTTIIESGVDIPNAN 884 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 + I DADK G T L Q GR R+ S Sbjct: 885 TIIINDADKLGL----TQLYQLRGRVGRSTQS 912 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 48/250 (19%), Positives = 109/250 (43%), Gaps = 14/250 (5%) Query: 143 MQTDYH---PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 M +D H P Q A +L + + S+++ QL + V + + +A + + + + +++ Sbjct: 1 MNSDLHWLLPHLRQDLAYKKLYEHLSSKQQ-QLDITVLDAVRPILIAALFQEINQSLLIV 59 Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259 N A ++ + F P + F Y+++ P I+ + ++ +I R Sbjct: 60 THNHERARKIEEQLSLFVPDGQIRLF-PYFEF------APFNHEIIDID--LDNEIIRFL 110 Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 + +R I+VS + + + + +S + + + G + + + L Y+ Sbjct: 111 STVFGQNNDRPQVIIVSIDALVRLLPAPSDFSAISLSVFPGLDISPESICKQLDTFGYRY 170 Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 ++I GT+ G ++IFP D R+ FGN+IE + + P + +++E + Sbjct: 171 ENISDTPGTYSRRGGILDIFPPG-SDAPVRLEFFGNNIETLRIYDPASQLTKKHIEFATV 229 Query: 380 YANSHYVTPR 389 S + P+ Sbjct: 230 GPASLILKPQ 239 >gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus] Length = 715 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TK+ A+ + +L + I +H + + ER + + D R GK VLV ++ Sbjct: 528 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 587 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692 GLDI V D + + IGR R N+ + I + DT Sbjct: 588 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 632 >gi|73966207|ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A, isoform 1 isoform 1 [Canis familiaris] gi|50814|emb|CAA26842.1| unnamed protein product [Mus musculus] gi|50819|emb|CAA26845.1| unnamed protein product [Mus musculus] Length = 390 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 265 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 324 Query: 651 CGLV 654 LV Sbjct: 325 VSLV 328 >gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv. campestris str. B100] gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv. campestris] Length = 642 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ TK E+L + L R + ++ +++ R + I L+ GK D+LV ++ Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA RN ++ IL+ K + AI+ Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRAIE 364 Query: 703 ETTRRREKQLEHNKKHNIN 721 TR+ ++++ +N Sbjct: 365 RATRQPIEEMQLPSVDAVN 383 >gi|60683468|ref|YP_213612.1| putative primosomal protein N' [Bacteroides fragilis NCTC 9343] gi|265767517|ref|ZP_06095183.1| primosomal protein N [Bacteroides sp. 2_1_16] gi|60494902|emb|CAH09709.1| putative primosomal protein N' [Bacteroides fragilis NCTC 9343] gi|263252822|gb|EEZ24334.1| primosomal protein N [Bacteroides sp. 2_1_16] Length = 819 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 613 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 672 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 673 GRAGRKNKRGRVVLQTKSIDHPI 695 >gi|49487268|ref|YP_044489.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|49245711|emb|CAG44190.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476] Length = 953 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|331701894|ref|YP_004398853.1| type III restriction protein res subunit [Lactobacillus buchneri NRRL B-30929] gi|329129237|gb|AEB73790.1| type III restriction protein res subunit [Lactobacillus buchneri NRRL B-30929] Length = 451 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 11/150 (7%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G R ++ + ++ + + I ++ S+ + ER I+ D R GK VL L Sbjct: 216 GQRTIVYAHDTQHSKQIAAEFRKAGISAKHCDSKTPSDERKRIMSDFRKGKITVLCNFGL 275 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNVNSKVILYADTITKSIQ 698 + EG D+ EC I R SL IQ R R + +K+ D + Sbjct: 276 VDEGYDVKECTCCVI--------ARPTESLVFDIQATMRCMRYLPNKMATIIDHAANYTR 327 Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEK 728 + +T R+ + KK N +S+ K Sbjct: 328 FGLPDTPRQWSLEGRPKKKRQNNTKSIPVK 357 >gi|297209690|ref|ZP_06926086.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296885363|gb|EFH24300.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 953 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri] gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri] Length = 404 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ + LTE + + N V MH ++ ER EI+ + R Sbjct: 263 DLYDTLTIT-----QAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFR 317 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV ++ D G ++ + I IGR+ R Sbjct: 318 GGTTRVLITTDMWARGIDVQQVSLV--INYDLPG---NRENYIHRIGRSGR 363 >gi|110339425|gb|ABG67961.1| eukaryotic initiation factor 4A [Callinectes sapidus] Length = 432 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ +++R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 307 TRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 366 Query: 651 CGLV 654 LV Sbjct: 367 VSLV 370 >gi|331089330|ref|ZP_08338231.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405511|gb|EGG85043.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium 3_1_46FAA] Length = 383 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H ++K E +I+ D G DVLV ++ GLDIP + I DAD+ G Sbjct: 74 VAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGL---- 129 Query: 669 TSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 130 SQLYQLRGRVGRS 142 >gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio] Length = 908 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ V K E+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 503 VLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAAR 562 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y TK A D Sbjct: 563 GLDIPSIRTVVNYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTTKDTSFAGD 614 >gi|298483039|ref|ZP_07001220.1| primosomal protein N' [Bacteroides sp. D22] gi|298270783|gb|EFI12363.1| primosomal protein N' [Bacteroides sp. D22] Length = 818 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694 >gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4] Length = 535 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRM ++LTE L R +H ++K +R ++R R GK ++L+ ++ G+D+ + Sbjct: 258 TKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARGIDVDD 317 Query: 651 CGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTI-----TKSIQLAI 701 V D D E ++ +T GRA V K + I TK + + I Sbjct: 318 VEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPI 377 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-- 759 T + Q EK+ME I I+ E+ I I +Q++ S Sbjct: 378 PST--------------DDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAM 423 Query: 760 --GKAHLKSLRKQMHLAAD 776 A LK Q++L D Sbjct: 424 DIAAAFLKQALGQINLDND 442 >gi|255011617|ref|ZP_05283743.1| putative primosomal protein N' [Bacteroides fragilis 3_1_12] Length = 809 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 603 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 662 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 663 GRAGRKNKRGRVVLQTKSIDHPI 685 >gi|125540426|gb|EAY86821.1| hypothetical protein OsI_08201 [Oryza sativa Indica Group] Length = 787 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 +D+ L R ++ +H ++ L R +++ + G+F VLV L GLD+PEC LV Sbjct: 659 KDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVI 718 Query: 656 ILD 658 LD Sbjct: 719 NLD 721 >gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus] Length = 810 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 382 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 493 >gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM 19965] gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM 19965] Length = 1132 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 M +D E +++ +R+ + +K E +++ D K+DVL+ L+ GLD P Sbjct: 806 MMKDRLEKIFKGKVRIGVAYGRMKGSELEKVMFDFYQDKYDVLLCTTLIENGLDQPNANT 865 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + I DAD G + L Q GR R+ Sbjct: 866 IIIYDADFMGL----SQLYQMKGRVGRS 889 >gi|284802257|ref|YP_003414122.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578] gi|284995399|ref|YP_003417167.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923] gi|284057819|gb|ADB68760.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578] gi|284060866|gb|ADB71805.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923] Length = 697 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MH ++ ++ +I+RD K D LV ++ G+++P ++ I DAD+ G L Sbjct: 522 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 577 Query: 672 IQTIGRAARNVN-SKVILYADTITK 695 Q GR R V+ S IL AD T+ Sbjct: 578 HQLRGRVGRGVDQSYCILIADPKTE 602 >gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 650 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 34/73 (46%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TK+ A+ L +LY +H + ER + +R R G +LV ++ G Sbjct: 454 LVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQALRSFRSGNTPILVATDVAARG 513 Query: 646 LDIPECGLVAILD 658 LDIP V D Sbjct: 514 LDIPHVAHVVNFD 526 >gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088] gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088] Length = 1150 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 ++V + ++ + ++ + +QL IGD + L+ Y D G F + Sbjct: 109 LIVPVSTAMHRLPPIDYIASNALQLGIGDEFDAVAFRQQLLNAGYVAVDTVYEHGEFALR 168 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 G +++FP V +R+ F D++ I F P T + I +E I + + + L Sbjct: 169 GSILDVFPMG-SSVPYRIDTFDADVDTIRTFDPETQRTIEAIERIDLLPAREFPLTKGAL 227 Query: 393 NTAM 396 N M Sbjct: 228 NQFM 231 >gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna ACS-171-V-Col3] gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna ACS-171-V-Col3] Length = 1168 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 59/289 (20%), Positives = 124/289 (42%), Gaps = 32/289 (11%) Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V+ + + A L +E+ N N E+F P + S+ Sbjct: 49 IDKPLVVVVEDNMRARNL-TEYLNDIEENICEFF-------------PSRELNFYNAKSL 94 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310 ++ + R + LL I+V++ + + +S ++ +K D + +EL Sbjct: 95 DDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQE 154 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L +Y+R D +G F + G ++IFP H R+ +F ++I+ + F T + Sbjct: 155 KLRVLKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL---IELEKEGRLLEA-QRLEQRI 426 I + + + I + S + + + I++ L R+ I E + + ++L + I Sbjct: 214 IEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYI 273 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 DLE SC +LT ++ T+F+Y +DS++ +++ Sbjct: 274 RSDLEYEIDLVSC--------FLTKKD----YDTVFDYFADDSIMMIED 310 >gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans] gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans] Length = 800 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634 I + G +I++ V TK ED+ + + +H + ER +++D R GK + Sbjct: 485 IKNSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSN 544 Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +L+ ++ GLD+ + V D + S + + IGR R Sbjct: 545 ILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 585 >gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] Length = 775 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + ++G + ++ V TK+ +D+T+ + +H + ER ++ + R GK +L Sbjct: 353 IGCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNGKTAIL 412 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLD+ + V D + S I IGR R Sbjct: 413 VATDVAARGLDVEDVKYVVNFD-----YPNSSEDYIHRIGRTGR 451 >gi|194466496|ref|ZP_03072483.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23] gi|194453532|gb|EDX42429.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23] Length = 678 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 +V +H + T E+ E +R + G+ VLV ++ G+D P ++ I DAD+ G Sbjct: 501 KVGLLHGRMGTEEKDEAMRQFKSGELQVLVATTVIEVGVDNPNATVMVIYDADRFGL--- 557 Query: 668 KTSLIQTIGRAAR-NVNSKVILYADTIT 694 L Q GR R N S +L AD T Sbjct: 558 -AQLHQLRGRVGRGNRQSYCLLIADPKT 584 >gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 642 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ TK E+L + L R + ++ +++ R + I L+ GK D+LV ++ Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310 Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLD+ V D D E ++ I GRA RN ++ IL+ K + AI+ Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRAIE 364 Query: 703 ETTRRREKQLEHNKKHNIN 721 TR+ ++++ +N Sbjct: 365 RATRQPIEEMQLPSVDAVN 383 >gi|114331666|ref|YP_747888.1| primosomal protein N' [Nitrosomonas eutropha C91] gi|114308680|gb|ABI59923.1| replication restart DNA helicase PriA [Nitrosomonas eutropha C91] Length = 733 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 11/119 (9%) Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF---LRSK----TSLIQTIGRAAR-NV 682 GK D+LVG LL +G D P LV +L+AD + R++ + L+Q GRA R ++ Sbjct: 533 GKVDILVGTQLLAKGHDFPNLALVCVLNADSSLYSTDFRAEEHLFSQLMQVAGRAGRAHI 592 Query: 683 NSKVILYADTITKSIQLAI--DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739 V++ + + LA+ + + QL+ K + P V ++ P+L E Sbjct: 593 PGTVLIQTEFPQHPLYLALIRQDYAAYAQTQLKERKSASFPP-FVYLAVLRAEAPVLAE 650 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKIL 205 P+ +Q AIA++L I + LL G+TGSGKT +A + A Q+ +V+ P L Sbjct: 199 PTTEQAHAIAEILARIGTFTP-WLLHGITGSGKTEVYLQVAASLLAQQKQILVLVPEINL 257 Query: 206 AAQLYSEFKNFFPHNAV 222 QL + F+ FP+ + Sbjct: 258 TPQLEATFRKRFPNTPL 274 >gi|224036248|pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex gi|224036250|pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex gi|224036251|pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex gi|224036253|pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 263 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 322 Query: 651 CGLV 654 LV Sbjct: 323 VSLV 326 >gi|149173513|ref|ZP_01852143.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797] gi|148847695|gb|EDL62028.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797] Length = 691 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + +H ++ ER EI+R G VLV ++ G+D+P L+ IL AD+ G Sbjct: 512 IGLVHGQMDREERAEIMRQFHQGTIQVLVSTTVVEVGVDVPNATLMVILQADRFGL---- 567 Query: 669 TSLIQTIGRAARNVN 683 + L Q GR +R ++ Sbjct: 568 SQLHQLRGRVSRGLH 582 >gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1 Length = 696 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L + +H + ER + + R G+ +LV + G Sbjct: 464 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARG 523 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 524 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 559 >gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC 33394] gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC 33394] Length = 1258 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 13/193 (6%) Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254 P IV+ + A +L + ++ F P + F+ ++ E + P D E+ S + + Sbjct: 35 PKIVLTADSETALRLQTAWQFFRPQDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQ- 92 Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314 +++ A D + + + + LK G +++ +L +LV+ Sbjct: 93 ---LKNGAA-------DVLFAPVSTAMQRLAPPSFLMGRTFWLKTGQTLDLDKLRENLVE 142 Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374 Y + G F V G +++FP D+ +R+ +F N+I+ I F P T + + V Sbjct: 143 AGYAAVSNVVAAGEFAVRGGIVDLFPMG-ADLPYRIDLFDNEIDSIKTFDPDTQRTLAPV 201 Query: 375 ETIKIYANSHYVT 387 I++ + T Sbjct: 202 SEIRLLPAHEFPT 214 Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 944 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1000 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1001 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1036 >gi|312380576|gb|EFR26532.1| hypothetical protein AND_07336 [Anopheles darlingi] Length = 608 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Query: 581 QGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 QGL +L+ V +K A+ L TE +Y+ + V +HS+ ER ++R R GK +L+ Sbjct: 386 QGLSPPVLVFVQSKDRAQQLFTELIYD-GLNVDVIHSDRSQRERDNVVRAFREGKIWILI 444 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D LV D F S S + IGR R Sbjct: 445 CTELMSRGIDFKGVNLVVNYD-----FPPSTISYVHRIGRTGR 482 >gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] Length = 413 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ L + V MHS+++ +R ++ + + G+ ++LV +++ Sbjct: 246 RVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V L Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|269218657|ref|ZP_06162511.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 848 str. F0332] gi|269211768|gb|EEZ78108.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral taxon 848 str. F0332] Length = 706 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 I V MH + + E+ E + G+ +LV ++ G+D+PE + ILDAD+ G Sbjct: 523 GIGVGTMHGRMSSDEKAEAMESFASGRAPILVSTTVVEVGVDVPEATAMVILDADRFGL- 581 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + L Q GR R V L + K Sbjct: 582 ---SQLHQLRGRIGRGTAPGVCLAVTSAEKG 609 >gi|167764398|ref|ZP_02436523.1| hypothetical protein BACSTE_02786 [Bacteroides stercoris ATCC 43183] gi|167697803|gb|EDS14382.1| hypothetical protein BACSTE_02786 [Bacteroides stercoris ATCC 43183] Length = 820 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 615 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLMAQVAG 674 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +V+L +I I Sbjct: 675 RAGRKNKRGRVVLQTKSIEHPI 696 >gi|83589093|ref|YP_429102.1| DEAD/DEAH box helicase-like [Moorella thermoacetica ATCC 39073] gi|83572007|gb|ABC18559.1| DEAD/DEAH box helicase-like protein [Moorella thermoacetica ATCC 39073] Length = 453 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%) Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 + E +RP G P R+ V + IN GL++LL V + E + +L Sbjct: 281 FVREPFLRPPGTGPLP------RSMV----NCINTTLGAGLQLLLFVPAVSLVEGVAAWL 330 Query: 603 YER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 + VR H+ R E+I R G+F VLV ++ G+ IP V Sbjct: 331 LDSWPGQAPGGAWVRGCHAAHP--RREEVIAAFRRGEFPVLVTTTVMERGVTIPRLN-VL 387 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706 +L A+ EG + + ++L+Q GRA R+ +V I + + AI E R Sbjct: 388 VLYAE-EGRVFTASTLVQIAGRAGRSAAYPTGRVWF----IGRHLSPAIAEAAR 436 >gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) isoform 10 [Canis familiaris] Length = 655 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 339 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 398 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 399 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 452 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 453 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 479 >gi|59800577|ref|YP_207289.1| hypothetical protein NGO0117 [Neisseria gonorrhoeae FA 1090] gi|194097746|ref|YP_002000787.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae NCCP11945] gi|239998249|ref|ZP_04718173.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02] gi|240015874|ref|ZP_04722414.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA6140] gi|240114966|ref|ZP_04729028.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18] gi|240117250|ref|ZP_04731312.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1] gi|240124998|ref|ZP_04737884.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679] gi|260441218|ref|ZP_05795034.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI2] gi|268594104|ref|ZP_06128271.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02] gi|268600632|ref|ZP_06134799.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18] gi|268602945|ref|ZP_06137112.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1] gi|268683583|ref|ZP_06150445.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679] gi|291044555|ref|ZP_06570264.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2] gi|59717472|gb|AAW88877.1| putative DNA helicase [Neisseria gonorrhoeae FA 1090] gi|193933036|gb|ACF28860.1| RecG [Neisseria gonorrhoeae NCCP11945] gi|268547493|gb|EEZ42911.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02] gi|268584763|gb|EEZ49439.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18] gi|268587076|gb|EEZ51752.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1] gi|268623867|gb|EEZ56267.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679] gi|291011449|gb|EFE03445.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2] gi|317163533|gb|ADV07074.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae TCDC-NG08107] Length = 680 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 L L E NI + +H +K E+ E++ + G+ +VLV ++ G+D+P L+ I Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693 A++ G L Q GR R V+L+A+ + Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAGESVCVLLFAEPL 589 >gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [Sodalis glossinidius str. 'morsitans'] gi|84780722|dbj|BAE75499.1| ATP-dependent DNA helicase [Sodalis glossinidius str. 'morsitans'] Length = 694 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 +RV +H +K LE+ ++++ + G +LV ++ G+D+P L+ I + ++ G Sbjct: 519 LRVGLVHGRMKALEKQQLMQAFKAGDVQLLVATTVIEVGVDVPNASLMIIENPERLGL-- 576 Query: 667 SKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698 L Q GR R + V+LY ++K+ Q Sbjct: 577 --AQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQ 608 >gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis NCFD 2020] gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis NCFD 2020] Length = 537 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI + Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDISD 307 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V D + S + IGR R Sbjct: 308 VTHVYNYD-----ITQDPESYVHRIGRTGR 332 >gi|304384760|ref|ZP_07367106.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284] gi|304328954|gb|EFL96174.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284] Length = 675 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L ++ +R + +H ++ E+ +I+ D + GK+ LV ++ G+D+P L+ Sbjct: 486 EELKDFFGQR-YAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMV 544 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN 681 I DAD+ G L Q GR R Sbjct: 545 IQDADRFGL----AQLHQLRGRIGRG 566 >gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca] Length = 1917 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|253744188|gb|EET00428.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581] Length = 900 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TK E LT L N+R ++ + +R + D G++++L+ ++ Sbjct: 300 KLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQRQRTIALSDFDKGRYNILISTDVAA 359 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+DIP V + F S + + +GR+AR Sbjct: 360 RGIDIPSLDCVINYN-----FPSSGKNYVHRVGRSAR 391 >gi|227890267|ref|ZP_04008072.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200] gi|227849081|gb|EEJ59167.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200] Length = 679 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL + Y ++ V +H ++K ++ EI+ GK ++LV +++ G+D+P Sbjct: 488 AEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572 >gi|225424226|ref|XP_002280664.1| PREDICTED: similar to ATP-dependent helicase [Vitis vinifera] Length = 1272 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 23/165 (13%) Query: 558 PVE---IRSARTQVEDVY----DEINLAAQQGLRILLTVLTK-------RMAEDLTEYLY 603 PVE I EDVY DE+ + + + I+ V+ + R A E + Sbjct: 1033 PVETYTIEGCDAGFEDVYQMMLDELEVGGK--IYIVYPVIEQSEQLPQLRAASTDLETIS 1090 Query: 604 ER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 R + +H +K+ E+ E +R R G+ ++L+ ++ G+D+P+ ++ +++A++ Sbjct: 1091 SRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAER 1150 Query: 662 EGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETT 705 G L Q GR R V SK +L + T + +L + E + Sbjct: 1151 FGI----AQLHQLRGRVGRGVRKSKCLLVSSTASGLNRLKVLENS 1191 >gi|167534955|ref|XP_001749152.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772305|gb|EDQ85958.1| predicted protein [Monosiga brevicollis MX1] Length = 543 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q GL+ +L+ V +K A+ L E L N+ V +H++ +R E+++ R G+ VL+ Sbjct: 343 QTGLQPPVLIFVQSKSRAQQLFEELVYENVNVDVIHADRTQQQRDEVVKRFREGQVWVLI 402 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +L+ G+D +V D F + T I +GR R Sbjct: 403 CTDLMGRGVDFKAVNVVINYD-----FPPNATEYIHRVGRTGR 440 >gi|328947735|ref|YP_004365072.1| UvrABC system protein C [Treponema succinifaciens DSM 2489] gi|328448059|gb|AEB13775.1| UvrABC system protein C [Treponema succinifaciens DSM 2489] Length = 655 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 29/40 (72%) Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793 SL + KG+ +K L+ QM AA NLNFE+AAR+RD IK L Sbjct: 204 SLLEGKGEETVKKLQGQMKEAAKNLNFEKAARLRDGIKAL 243 >gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa] gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa] Length = 802 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKR A DL YL + V +H ++K +R + + R G +LV + G Sbjct: 607 LVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVAPILVATAVAARG 666 Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 LDIP V D +D + ++ +T + +G A N K Sbjct: 667 LDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDK 710 >gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563] gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563] Length = 509 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++ L ER +H ++ +R+ ++R+ + GK D+LV ++ GLDI Sbjct: 247 TKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILVATDVAARGLDI-- 304 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 305 SGVTHVYNFD---IPQDPESYVHRIGRTGR 331 >gi|262401079|gb|ACY66442.1| eukaryotic initiation factor 4A [Scylla paramamosain] Length = 140 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ +++R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 15 TRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 74 Query: 651 CGLVAILD--ADKEGFL 665 LV D ++E ++ Sbjct: 75 VSLVINYDLPTNRENYI 91 >gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia intestinalis L1-82] gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia intestinalis L1-82] Length = 553 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRM ++LTE L R +H ++K +R ++R R GK ++L+ ++ G+D+ + Sbjct: 276 TKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARGIDVDD 335 Query: 651 CGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTI-----TKSIQLAI 701 V D D E ++ +T GRA V K + I TK + + I Sbjct: 336 VEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPI 395 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-- 759 T + Q EK+ME I I+ E+ I I +Q++ S Sbjct: 396 PST--------------DDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAM 441 Query: 760 --GKAHLKSLRKQMHLAAD 776 A LK Q++L D Sbjct: 442 DIAAAFLKQALGQINLDND 460 >gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) [Danio rerio] gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) [Danio rerio] Length = 719 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V K A+DL+ L + I V+ +H + + +R E ++D + G+ +LV +L Sbjct: 525 KVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLAS 584 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + + + + D F R+ + +GR R Sbjct: 585 RGLDVHD--ITHVFNYD---FPRNVEEYVHRVGRTGR 616 >gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia] gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia] Length = 2249 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 607 Query: 683 NSKVIL----YADTITKSIQL 699 VIL Y +S+QL Sbjct: 608 AYHVILVAPSYKSPTVESVQL 628 >gi|90581395|ref|ZP_01237190.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14] gi|90437372|gb|EAS62568.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14] Length = 693 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 8/106 (7%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 A++LT L ++++ +H +K E+ ++ + G+ D+LV ++ G+D+P L+ Sbjct: 508 ADELTGLL--PDLKIGLVHGRMKAAEKQAVMASFKAGELDLLVATTVIEVGVDVPNASLM 565 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698 I + ++ G L Q GR R + V+LY ++K+ Q Sbjct: 566 VIENPERLGL----AQLHQLRGRVGRGKVASHCVLLYHAPLSKTAQ 607 >gi|158312984|ref|YP_001505492.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp. EAN1pec] gi|158108389|gb|ABW10586.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec] Length = 781 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H + + R EI+ G+ DVLV ++ G+D+P ++ I+DAD G Sbjct: 597 GLRVEGLHGRLPSPVRDEIMTRFAAGEVDVLVATTVIEVGVDVPNATVMIIMDADWFGV- 655 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700 + L Q GR R V L ++ ++ A Sbjct: 656 ---SQLHQLRGRVGRGSAPGVCLLHTSVDGAVPAA 687 >gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] Length = 404 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 10/110 (9%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ +K +++ L + +++V +HS++ R E++++ + G D+LVG +++ G Sbjct: 248 LVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNIDILVGTDIIARG 307 Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692 +D+ + LV D D E + + IGR AR N V I + +T Sbjct: 308 IDVDDIRLVINYDVPNDSEDY-------VHRIGRTARANNDGVAITFVNT 350 >gi|319947517|ref|ZP_08021749.1| helicase [Streptococcus australis ATCC 700641] gi|319746457|gb|EFV98718.1| helicase [Streptococcus australis ATCC 700641] Length = 975 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 563 SARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +V+ + +I+ G ++ L+ +K+ A +L L ++ R R + E Sbjct: 430 TSEERVKHIIKKIDFYGVSGEKVKGLMFCSSKQEAHELASKLNQKGKRCRALTGEDNMET 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E++ L G+ D ++ +++ EG+DIP V +L +S +Q +GR R Sbjct: 490 RNEVVAQLEKGELDYILTVDIFNEGIDIPSVNQVVMLRNT-----QSSIVFVQQLGRGLR 544 Query: 681 NVNSK 685 SK Sbjct: 545 KHESK 549 >gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185] gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185] Length = 1209 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%) Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 G+G +E V L GD ++++ +LV Y R D+ RG F V G +++FP Sbjct: 148 GLGDLEP-----VSLAAGDERPLEDIVEALVAAAYTRVDMVERRGEFAVRGGILDVFPP- 201 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 ED R+ +G+ +EEI F K+ + ++++ + + P Sbjct: 202 TEDHPVRLEFWGDTVEEIRWF------KVADQRSLEVNPHGLWAPP 241 >gi|294102390|ref|YP_003554248.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM 12261] gi|293617370|gb|ADE57524.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM 12261] Length = 695 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++ V +H ++ + E+ I+R G D++V ++ G+D+P+ ++ I DAD+ G Sbjct: 514 DLNVGLLHGQLPSSEKETIMRSFARGHLDLIVSTTVIEVGVDVPQATVMVIEDADRFGL- 572 Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITK 695 + L Q GR R N S +L ++ T+ Sbjct: 573 ---SQLHQLRGRVGRGGNQSYCVLLSNPTTR 600 >gi|270290362|ref|ZP_06196587.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4] gi|270281143|gb|EFA26976.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4] Length = 675 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L ++ +R + +H ++ E+ +I+ D + GK+ LV ++ G+D+P L+ Sbjct: 486 EELKDFFGQR-YAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMV 544 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN 681 I DAD+ G L Q GR R Sbjct: 545 IQDADRFGL----AQLHQLRGRIGRG 566 >gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria] Length = 588 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L + G ++L+ V TKR+A+ L +L E+ +H + +R E + D + G+ +L Sbjct: 413 LREEGGKKVLVFVETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYDFKSGRMGIL 472 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 V + GLDI V D K S + IGR R N Sbjct: 473 VATAVAARGLDIKNVAHVINYDLPK-----SIDEYVHRIGRTGRVGN 514 >gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253] Length = 1148 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 50/309 (16%) Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226 Q LLG +TG+ +A++ E P +++AP+ A +L+ E F N ++ Sbjct: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282 YD + P + I S Q+ M+ +L++R V S ++ Sbjct: 76 LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124 Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 G + +K G + + L + L Y+ D + G + G +++FP Sbjct: 125 G---------HALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402 D+ +R+ F ++I+ + F + + + VE I + + PT A++ + + Sbjct: 176 -SDLPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230 Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462 + E+++ +A+ + Q++ + G+ + Y + L EP P LF Sbjct: 231 WR-DTFEVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPPLF 273 Query: 463 EYIPEDSLL 471 Y P ++LL Sbjct: 274 SYFPANTLL 282 Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ AE L E + E I + + + LER+ + D +F+VLV ++ G+DIP Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I AD G L Q GR R+ Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906 >gi|317498522|ref|ZP_07956816.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 5_1_63FAA] gi|316894215|gb|EFV16403.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium 5_1_63FAA] Length = 676 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ Y+H ++K ++ +++ D GK DVLV ++ G+++P ++ + +A++ G Sbjct: 501 SVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTVVEVGVNVPNATVMMVENAERFGL- 559 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R Sbjct: 560 ---AQLHQLRGRVGRG 572 >gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Ailuropoda melanoleuca] Length = 1931 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|237717374|ref|ZP_04547855.1| primosomal protein N [Bacteroides sp. D1] gi|262406139|ref|ZP_06082689.1| primosomal protein N [Bacteroides sp. 2_1_22] gi|294644034|ref|ZP_06721811.1| primosomal protein N' [Bacteroides ovatus SD CC 2a] gi|294810186|ref|ZP_06768853.1| primosomal protein N' [Bacteroides xylanisolvens SD CC 1b] gi|229443357|gb|EEO49148.1| primosomal protein N [Bacteroides sp. D1] gi|262357014|gb|EEZ06104.1| primosomal protein N [Bacteroides sp. 2_1_22] gi|292640558|gb|EFF58799.1| primosomal protein N' [Bacteroides ovatus SD CC 2a] gi|294442598|gb|EFG11398.1| primosomal protein N' [Bacteroides xylanisolvens SD CC 1b] Length = 818 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694 >gi|308234564|ref|ZP_07665301.1| ATP-dependent DNA helicase RecG [Atopobium vaginae DSM 15829] gi|328944162|ref|ZP_08241627.1| DNA helicase RecG [Atopobium vaginae DSM 15829] gi|327492131|gb|EGF23905.1| DNA helicase RecG [Atopobium vaginae DSM 15829] Length = 749 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%) Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI---RVR 610 ++ P ++ + ART V+D+ +AQ T A+ E L + R+ Sbjct: 518 IICPLIDNQDARTTVDDIAPNAQSSAQ----------TLHSAQQTFESLKRSSFSAYRIG 567 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 + + + E+ ++ R K DVLV ++ G+D+P + ILDAD+ G + Sbjct: 568 LLTGRMDSDEKDRVMSQFRAHKLDVLVATTIVEVGVDVPRACAMIILDADRFGL----AT 623 Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715 L Q GR R + + Y T +K LA RRR LE+ Sbjct: 624 LHQLRGRVGRGSLAAQV-YLVTASKKHSLA-----RRRLDILENT 662 >gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus] Length = 530 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ TKR A+ L YL + +H + + ER E + D + + VLV ++ Sbjct: 324 RTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFKRNRASVLVATSVAS 383 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLDIP V D E + IGR R N+ + Sbjct: 384 RGLDIPAVKHVVNFDLPSE-----IDDYVHRIGRTGRCGNTGL 421 >gi|167765566|ref|ZP_02437630.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1] gi|167712751|gb|EDS23330.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1] gi|291559032|emb|CBL37832.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium SSC/2] Length = 676 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ Y+H ++K ++ +++ D GK DVLV ++ G+++P ++ + +A++ G Sbjct: 501 SVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTVVEVGVNVPNATVMMVENAERFGL- 559 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R Sbjct: 560 ---AQLHQLRGRVGRG 572 >gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus] Length = 630 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A+ R L+ V TKR A+ L +L + + +H + + ER + D + G+ +L+ Sbjct: 452 AETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERETALLDFKNGRCPILIA 511 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691 ++ GLDIP+ V D + + IGR R N+ S Y+D Sbjct: 512 TSVAARGLDIPKVEHVINYDLPSD-----IDEYVHRIGRTGRCGNLGSATSFYSD 561 >gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan troglodytes] gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan troglodytes] Length = 674 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 297 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 348 >gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes] gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes] gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes] gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes] Length = 1922 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis] Length = 705 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR A+ L +L + N+ +H + ER + D + G +++ ++ Sbjct: 501 RTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADFKSGTCPIMIATSVAA 560 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691 GLDIP+ V D E + +GR R N+ Y+D Sbjct: 561 RGLDIPKVEHVINFDLPNE-----IDEFVHRVGRTGRCGNLGQATSFYSD 605 >gi|42519402|ref|NP_965332.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533] gi|41583690|gb|AAS09298.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533] Length = 679 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL + Y ++ V +H ++K ++ EI+ GK ++LV +++ G+D+P Sbjct: 488 AEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572 >gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440] gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440] Length = 1149 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 21/208 (10%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + R +++ + A +L E + F P V F + YD Sbjct: 21 LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G +++ +++ L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379 +F N+IE + F P T + I V+++++ Sbjct: 184 LFDNEIETLRTFDPETQRSIDKVDSVRL 211 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VLV ++ G+D+P Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 882 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 + I ADK G L Q GR R+ + YA +T + Q + +R E Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 933 >gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus polymyxa SC2] gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus polymyxa SC2] Length = 525 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDV-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333 >gi|260642551|ref|ZP_05416333.2| primosomal protein [Bacteroides finegoldii DSM 17565] gi|260621597|gb|EEX44468.1| primosomal protein [Bacteroides finegoldii DSM 17565] Length = 818 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694 >gi|242810274|ref|XP_002485548.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500] gi|218716173|gb|EED15595.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500] Length = 667 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTE + I RY+ + R E + + G++ VL+ L EG DIP V + Sbjct: 319 LTEAFRDNGIDARYITANTPRQTRNEELEAFKRGEYPVLLNCGLFTEGTDIPNIDCVVLA 378 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 RSK+ LIQ IGR R Sbjct: 379 RP-----TRSKSLLIQMIGRGLR 396 >gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris] Length = 1923 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys] gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys] Length = 1922 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|329667073|gb|AEB93021.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii DPC 6026] Length = 679 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 AEDL + Y ++ V +H ++K ++ EI+ GK ++LV +++ G+D+P Sbjct: 488 AEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++ I +AD+ G + L Q GR R Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572 >gi|313149452|ref|ZP_07811645.1| primosomal protein N [Bacteroides fragilis 3_1_12] gi|313138219|gb|EFR55579.1| primosomal protein N [Bacteroides fragilis 3_1_12] Length = 819 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 613 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 672 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 673 GRAGRKNKRGRVVLQTKSIDHPI 695 >gi|298245570|ref|ZP_06969376.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963] gi|297553051|gb|EFH86916.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963] Length = 913 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ +H +K E+ +++ R K D+LV +++ G+D+P ++ I DAD+ G Sbjct: 735 TLRLGLLHGAMKPAEKDQVMHRFRDHKLDILVATSVIEVGIDVPNATVMVIEDADRFGL- 793 Query: 666 RSKTSLIQTIGRAARN 681 + L Q GR R Sbjct: 794 ---SQLHQFRGRVGRG 806 >gi|258424971|ref|ZP_05687842.1| helicase [Staphylococcus aureus A9635] gi|257844805|gb|EEV68848.1| helicase [Staphylococcus aureus A9635] Length = 953 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 L+ L+ V +K+ A DL + L + I+ + + R +I L+ GK + ++ ++L Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511 Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 EG+DIPE V +L + + IQ +GR R ++K Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549 >gi|254993542|ref|ZP_05275732.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-064] Length = 259 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 MH ++ ++ +I+RD K D LV ++ G+++P ++ I DAD+ G L Sbjct: 84 MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 139 Query: 672 IQTIGRAARNVN-SKVILYADTITK 695 Q GR R N S IL AD T+ Sbjct: 140 HQLRGRVGRGANQSYCILIADPKTE 164 >gi|126653480|ref|ZP_01725573.1| hypothetical protein BB14905_23188 [Bacillus sp. B14905] gi|126589758|gb|EAZ83892.1| hypothetical protein BB14905_23188 [Bacillus sp. B14905] Length = 182 Score = 43.5 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 29/45 (64%) Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 K ++ +RK+M A D FEEAA++RDE+K L+ F+G D S Sbjct: 138 KKQIEDIRKRMKFAVDEEQFEEAAKLRDEVKELEKQLQFEGGDVS 182 >gi|119177270|ref|XP_001240430.1| conserved hypothetical protein [Coccidioides immitis RS] gi|303316075|ref|XP_003068042.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides posadasii C735 delta SOWgp] gi|118593421|sp|Q1DQ20|IF4A_COCIM RecName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=Translation initiation factor 1 gi|240107718|gb|EER25897.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides posadasii C735 delta SOWgp] Length = 398 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L R+ V MH E++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 273 TRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 333 VSLVINYDLPANRENYI 349 >gi|163845859|ref|YP_001633903.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl] gi|222523571|ref|YP_002568041.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl] gi|163667148|gb|ABY33514.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl] gi|222447450|gb|ACM51716.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl] Length = 872 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%) Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER-------NIRVR 610 R R + VY I +G ++ + +E L E +YER ++RV Sbjct: 638 RVGRAERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVA 697 Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670 +H ++ E+ +++R R ++D+LV ++ G+D+P + I A++ G Sbjct: 698 LLHGKLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVIEGAERFGL----AQ 753 Query: 671 LIQTIGRAARNVN-SKVILYADT 692 L Q GR R + S IL +D+ Sbjct: 754 LHQFRGRVGRGHHQSYCILISDS 776 >gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568] Length = 1305 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A +L + ++ F PH+ F+ ++ E + P D E+ S++ + Sbjct: 37 VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++ A D + V + + + V + LK G +++ L + LV Sbjct: 93 -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAG 144 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP E + +R+ +F ++I+ I F T + I V Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 996 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1052 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1053 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1088 >gi|320032406|gb|EFW14359.1| ATP-dependent RNA helicase eIF4A [Coccidioides posadasii str. Silveira] Length = 382 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L R+ V MH E++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 257 TRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 316 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 317 VSLVINYDLPANRENYI 333 >gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa E681] gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa E681] Length = 529 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDV-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333 >gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus] gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus] gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus] Length = 1922 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1] Length = 530 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRM ++LTE L R +H ++K +R ++R R GK ++L+ ++ G+D+ + Sbjct: 253 TKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARGIDVDD 312 Query: 651 CGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTI-----TKSIQLAI 701 V D D E ++ +T GRA V K + I TK + + I Sbjct: 313 VEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPI 372 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-- 759 T + Q EK+ME I I+ E+ I I +Q++ S Sbjct: 373 PST--------------DDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAM 418 Query: 760 --GKAHLKSLRKQMHLAAD 776 A LK Q++L D Sbjct: 419 DIAAAFLKQALGQINLDND 437 >gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286] gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286] Length = 851 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 12/120 (10%) Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-HSEVKTLERI------EIIRDL 628 L + G R+++ ++ AE LT++L + +++ S+ + E + E + Sbjct: 370 TLGIENGERVIVFTESRDTAETLTDFLSDHFETEKFVGQSDTEGSEGMTQTQQQETLDRF 429 Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 R G+F+VLV ++ EGLD+PE LV + + + IQ GR R +V++ Sbjct: 430 RAGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQTEGRVVV 484 >gi|121711547|ref|XP_001273389.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1] gi|119401540|gb|EAW11963.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1] Length = 539 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGL 653 ++LTE I RY+ ++ R+E +R R ++ VL+ L EG DIP +C L Sbjct: 174 KELTETFRNYGIDARYITAKTSREARMEQLRAFRDREYPVLLNCGLFTEGTDIPNIDCVL 233 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680 +A RS+ LIQ IGR R Sbjct: 234 LARP-------TRSRNLLIQMIGRGLR 253 >gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus multilocularis] Length = 403 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + ++ T+R AE L + + + N V MH ++ ER EI+R+ R Sbjct: 262 DLYDTLTVTQS-----VIFCNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFR 316 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 + VL+ +LL G+D+ + +V G ++ I IGR+ R Sbjct: 317 SSESRVLITTDLLARGIDVQQVSMVI-----NYGLPNNRELYIHRIGRSGR 362 >gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana) tropicalis] Length = 609 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 324 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPIL 383 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696 + ++ GLD+ + V D + S + IGR AR+ N K Y + Sbjct: 384 IATDVASRGLDVEDIKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 437 Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734 ++ A R K LE Q++ K+M+++D Sbjct: 438 LKQA-----RELVKVLEEAN------QTINPKLMQLVD 464 >gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus] gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus] gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus] gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus] Length = 728 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TK+ A+ + +L + I +H + + ER + + D R GK VLV ++ Sbjct: 541 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 600 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692 GLDI V D + + IGR R N+ + I + DT Sbjct: 601 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 645 >gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus] gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName: Full=DEAD box protein 4; AltName: Full=Mvh; AltName: Full=Vasa homolog gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus] Length = 702 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TK+ A+ + +L + I +H + + ER + + D R GK VLV ++ Sbjct: 515 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 574 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692 GLDI V D + + IGR R N+ + I + DT Sbjct: 575 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 619 >gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus pyogenes M49 591] Length = 385 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1163 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 63/311 (20%), Positives = 126/311 (40%), Gaps = 35/311 (11%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 SR K LL GV + + + +P +++ N+ A + Y++ + +E F Sbjct: 21 SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285 + T T + ++ +I L R ++ + Y + Sbjct: 81 ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 + + + +GD + +L L + Y R+++ + G F + GD ++++P E Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 R+ FG++I+ I F LT Q R++E + P T+ A ++ Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 +L++ GR L A L + LE+ E + Q ++ +RYL P +L +Y Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCNRYLDYLLP--KSFSLLDY 286 Query: 465 IPEDSLLFVDE 475 +P L+ ++ Sbjct: 287 LPAKGLILFND 297 >gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102] Length = 666 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L ++ +H + ER + R G+ +L Sbjct: 436 LHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPIL 495 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 496 VATAVAARGLDIPNVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 540 >gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii] gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii] gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii] Length = 1922 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|295085452|emb|CBK66975.1| primosomal protein N' [Bacteroides xylanisolvens XB1A] Length = 818 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694 >gi|295699664|ref|YP_003607557.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1002] gi|295438877|gb|ADG18046.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1002] Length = 1509 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 539 QCQGIIVEQI-IRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595 +C I V + R L PPV + + A E VYD + Q L+ V T+RMA Sbjct: 267 ECAVIDVGHVRARDLALEIPPVPLEAVMANEVWERVYDRLAELVAQHRTTLIFVNTRRMA 326 Query: 596 EDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 E +L ER + V H + R + + L+ G+ VL+ L G+DI + L Sbjct: 327 ERAARHLTERLGKDAVAAHHGSLAKEHRFDAEQRLKRGELRVLIATASLELGIDIGDVDL 386 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 V + G R+ +Q +GR+ +V Sbjct: 387 VC-----QMGSPRAIAPFLQRVGRSGHHVGG 412 >gi|302525016|ref|ZP_07277358.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4] gi|302433911|gb|EFL05727.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4] Length = 717 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 19/189 (10%) Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 + +++ +H + T E+ +++ GK +VLV ++ G+++P + ILDAD+ G Sbjct: 532 KGLKIAALHGRMPTDEKDAVMQAFGAGKVEVLVATTVVEVGVNVPNATAMVILDADRFGV 591 Query: 665 LRSKTSLIQTIGRAAR-NVNSKVILYADTI----TKSIQLAIDETTRRREKQ---LEHNK 716 + L Q GR R +V +L +T+ T+ A++ TT E LE + Sbjct: 592 ----SQLHQLRGRVGRGSVPGLCLLVTETLDGTSTRERLAAVESTTDGFELSRLDLELRR 647 Query: 717 KHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774 + +I QS K ++++ +L ++ T AQ+L G L SL + Sbjct: 648 EGDILGAAQSGKRSGLKLLS-LLRDEDLITEARAQAQELV----TGDPELVSLPGLAQMV 702 Query: 775 ADNLNFEEA 783 AD ++ E A Sbjct: 703 ADVVDLERA 711 >gi|251793133|ref|YP_003007861.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus NJ8700] gi|247534528|gb|ACS97774.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus NJ8700] Length = 693 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ +H +K E+ EI+++ + D+LV ++ G+D+P L+ I +A++ G Sbjct: 517 HLRIGLVHGRMKPAEKQEIMQEFKDANLDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575 Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695 + L Q GR R + V++Y + K Sbjct: 576 ---SQLHQLRGRVGRGTTASFCVLMYKPPLGK 604 >gi|167393063|ref|XP_001740410.1| ATP-dependent RNA helicase DBP1 [Entamoeba dispar SAW760] gi|165895499|gb|EDR23175.1| ATP-dependent RNA helicase DBP1, putative [Entamoeba dispar SAW760] Length = 281 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%) Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 E + D + A +G + ++ V TKR A+ L YLY+ +V +H + R + RD Sbjct: 78 EAILDVLREFAGKGEKTVIFVETKRGADMLENYLYDHGYKVDSIHGD-----RSQADRDF 132 Query: 629 RLGKF-----DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L +F +LV ++ GLDIP+ +V D E S + +GR R Sbjct: 133 SLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGR 184 >gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes] Length = 1715 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with RNase motif; Short=Helicase MOI gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens] gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens] gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens] gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct] Length = 1922 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|332532738|ref|ZP_08408612.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis ANT/505] gi|332037765|gb|EGI74215.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis ANT/505] Length = 693 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646 VL + AED L E ++ V +H +K+ E+ I+ + + G VLV ++ G+ Sbjct: 498 VLQCQAAEDSALQLKEALPDLNVGLVHGRMKSAEKQAIMSEFKAGNIHVLVATTVIEVGV 557 Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698 D+P L+ I + ++ G L Q GR R + V+LY ++ + Q Sbjct: 558 DVPNASLIIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYHAPLSHTAQ 607 >gi|329936750|ref|ZP_08286457.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus M045] gi|329303980|gb|EGG47863.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus M045] Length = 989 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLER 621 ++ D DE+ AA+ R L VL D+ E L R +RV +H + ++ Sbjct: 767 RIGDEADEVRKKAAAEGERRPPLAVL------DVAEQLVAGPLRGLRVEVLHGRMPPEDK 820 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 ++R G+ DVLV ++ G+++P + I+DAD+ G + L Q GR R Sbjct: 821 DAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGV----SQLHQLRGRVGRG 876 Query: 682 VNSKVIL 688 + L Sbjct: 877 AAPGLCL 883 >gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4] gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4] Length = 1168 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 59/289 (20%), Positives = 124/289 (42%), Gaps = 32/289 (11%) Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V+ + + A L +E+ N N E+F P + S+ Sbjct: 49 IDKPLVVVVEDNMRARNL-TEYLNDIEENICEFF-------------PSRELNFYNAKSL 94 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310 ++ + R + LL I+V++ + + +S ++ +K D + +EL Sbjct: 95 DDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQE 154 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L +Y+R D +G F + G ++IFP H R+ +F ++I+ + F T + Sbjct: 155 KLRVLKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL---IELEKEGRLLEA-QRLEQRI 426 I + + + I + S + + + I++ L R+ I E + + ++L + I Sbjct: 214 IEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYI 273 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 DLE SC +LT ++ T+F+Y +DS++ +++ Sbjct: 274 RSDLEYEIDLVSC--------FLTKKD----YDTVFDYFADDSIMMIED 310 >gi|291165181|gb|ADD81195.1| vasa [Thunnus orientalis] Length = 192 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TKR A+ + +L + + +H + + ER + + D R GK VLV ++ Sbjct: 50 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 109 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684 GLDIP+ V D + + IGR R N+ Sbjct: 110 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 145 >gi|302419543|ref|XP_003007602.1| ATP-dependent RNA helicase DED1 [Verticillium albo-atrum VaMs.102] gi|261353253|gb|EEY15681.1| ATP-dependent RNA helicase DED1 [Verticillium albo-atrum VaMs.102] Length = 582 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 36/65 (55%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V +KR+A++L ++L+ MHS+ LER +R R G +LV ++ Sbjct: 385 RTIIFVNSKRVADELDDFLFNSGYPCTSMHSDRTQLEREGAMRAFRAGTSPILVATGVMA 444 Query: 644 EGLDI 648 G+D+ Sbjct: 445 RGIDV 449 >gi|255537355|ref|XP_002509744.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223549643|gb|EEF51131.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 595 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R +D L R ++ +H ++ L R I++ + G+ VLV L GLD+PEC Sbjct: 458 RQLKDAVFKLEARGMKAAELHGDLGKLSRSTILKKFKNGEVRVLVTNELSARGLDVPECD 517 Query: 653 LVAILD 658 LV LD Sbjct: 518 LVVNLD 523 >gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis] gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis] Length = 953 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +I++ V TK ED+ + + +H + ER +++D R GK ++L+ ++ Sbjct: 494 KIIIFVETKIKVEDILQIIRSEGYTATSIHGDKSQSERDSVLKDFRNGKSNILIATDVAS 553 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + V D + S + + IGR R Sbjct: 554 RGLDVEDLQFVINYD-----YPNSSENYVHRIGRTGR 585 >gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group] gi|75322251|sp|Q650T9|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7 gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group] gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group] Length = 696 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R+AR QV + D I ++ G I+ T TK A DL+ + R +H +V +R Sbjct: 352 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASDLSGLIAGS----RALHGDVAQAQR 404 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 I+ R GKF VLV N+ GLDI + L+ + R + I GR R Sbjct: 405 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 459 Query: 682 VNSKV 686 N+ V Sbjct: 460 GNTGV 464 >gi|281212253|gb|EFA86413.1| hypothetical protein PPL_00205 [Polysphondylium pallidum PN500] Length = 1213 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 Q L+ +L T + +T +Y V+ +S + + E + L+ G+ V+V Sbjct: 675 GGQSTLQYILASATIGNPKHMTMKMY-----VKAYYSSLSNKHKQETLNQLKTGQVKVIV 729 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692 N L G+DIPE I+ G+ SK S Q +GR R+ VI T Sbjct: 730 ASNALEAGVDIPELDACLII-----GYPGSKMSWKQRVGRVGRSKKGLVIFIPTT 779 >gi|166714784|gb|ABY88104.1| UvrB [Stenotrophomonas sp. ICB209] Length = 61 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 34/53 (64%) Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 ++FP+ + + R+ +F ++E+I+ F PLTG+ +RN++ +Y +H T R Sbjct: 3 DVFPAESDSESPRLELFDGEVEKITMFDPLTGETLRNMQRFTVYPKTHGATTR 55 >gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens] Length = 1923 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens] Length = 1912 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 480 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 532 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 533 YRSYVQSKGR-ARAPISNYIMLADT 556 >gi|322701035|gb|EFY92786.1| cell cycle control protein [Metarhizium acridum CQMa 102] Length = 397 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE L R+ V MH ++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 272 TRRKVDWLTEKLTARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 332 VSLVINYDLPANRENYI 348 >gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens] gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens] Length = 1829 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|241667284|ref|ZP_04754862.1| ATP-dependent DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875835|ref|ZP_05248545.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841856|gb|EET20270.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 679 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---A 196 F + Y + Q I ++L I S ++LL G G+GKT A + + A Sbjct: 245 FYKKLPYQLTQAQQRTITEILADISQSSAMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQA 304 Query: 197 IVMAPNKILAAQLYSEFKNFFP 218 +VMAP +ILA Q YS F ++ P Sbjct: 305 VVMAPTEILAEQHYSFFASYMP 326 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 K + ++L E L + N+ + Y +K+ ++I+ + D + K+ VLV ++ G+D+P Sbjct: 490 VKTLHKELAEALGKENVGLVY--GSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPN 547 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 ++ I +A++ G + L Q GR R ++LY+D I++ Sbjct: 548 ASIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDRISE 590 >gi|237718772|ref|ZP_04549253.1| primosomal protein N [Bacteroides sp. 2_2_4] gi|293372147|ref|ZP_06618538.1| primosomal protein N' [Bacteroides ovatus SD CMC 3f] gi|299144651|ref|ZP_07037719.1| primosomal protein N' [Bacteroides sp. 3_1_23] gi|229451904|gb|EEO57695.1| primosomal protein N [Bacteroides sp. 2_2_4] gi|292632939|gb|EFF51526.1| primosomal protein N' [Bacteroides ovatus SD CMC 3f] gi|298515142|gb|EFI39023.1| primosomal protein N' [Bacteroides sp. 3_1_23] Length = 818 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694 >gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM 16992] gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM 16992] Length = 1182 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 32/163 (19%) Query: 222 VEYFVSYY-----DYYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLLE 268 VE S+Y D Q EA+ PR DT + + R++H S L Sbjct: 82 VETIRSWYSGDPNDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPQEGSKLF 137 Query: 269 RNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 I+V V + G+ VE +SQ G+ + E LV+ Y R D Sbjct: 138 GPIRILVMPVRSLIQPVVAGLADVEPLVFSQ-------GEELALDEASRRLVENAYTRVD 190 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364 + + RG F V G I++FP L R+ FG++I+ I EF+ Sbjct: 191 LVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTIREFH 232 >gi|189465388|ref|ZP_03014173.1| hypothetical protein BACINT_01737 [Bacteroides intestinalis DSM 17393] gi|189437662|gb|EDV06647.1| hypothetical protein BACINT_01737 [Bacteroides intestinalis DSM 17393] Length = 823 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676 II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q G Sbjct: 618 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVSG 677 Query: 677 RAAR-NVNSKVILYADTITKSI 697 RA R N +VIL +I I Sbjct: 678 RAGRKNKRGRVILQTKSIDHPI 699 >gi|187954507|gb|AAI40777.1| FANCM protein [Homo sapiens] gi|219518301|gb|AAI44512.1| FANCM protein [Homo sapiens] Length = 2022 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 498 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 552 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 553 RKRQGRIVI 561 >gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 535 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L+E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 249 TKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 307 SGVTHVINFD---LPQDPESYVHRIGRTGR 333 >gi|169830067|ref|YP_001700225.1| hypothetical protein Bsph_4651 [Lysinibacillus sphaericus C3-41] gi|168994555|gb|ACA42095.1| Hypothetical yacH protein [Lysinibacillus sphaericus C3-41] Length = 182 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 29/45 (64%) Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 K ++ +RK+M A D FEEAA++RDE+K L+ F+G D S Sbjct: 138 KKQIEEIRKRMKFAVDEEQFEEAAKLRDEVKELEKQLQFEGGDVS 182 >gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes] Length = 1868 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes] Length = 1930 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length = 602 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 16/164 (9%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +++ V TK+ E+L E L R ++ ++ +R I L+ G D+LV ++ Sbjct: 271 MIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAAR 330 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703 GLD+ V D + S + IGR R S + +L+ + + AI+ Sbjct: 331 GLDVDRISHVVNYDIPHD-----TESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIER 385 Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747 TR ++++ ++N Q V + DA T N+S Sbjct: 386 ATRHPLEEMQLPSVEDVNAQRVSK----------FGDAITENLS 419 >gi|50815|emb|CAA26843.1| unnamed protein product [Mus musculus] gi|50820|emb|CAA26846.1| unnamed protein product [Mus musculus] Length = 370 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 245 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 304 Query: 651 CGLV 654 LV Sbjct: 305 VSLV 308 >gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1] gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1] Length = 1149 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 21/208 (10%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + R +++ + A +L E + F P V F + YD Sbjct: 21 LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G +++ +++ L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379 +F N+IE + F P T + I V+++++ Sbjct: 184 LFDNEIETLRTFDPETQRSIDKVDSVRL 211 Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VLV ++ G+D+P Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 882 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 + I ADK G L Q GR R+ + YA +T + Q + +R E Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 933 >gi|329726470|gb|EGG62933.1| helicase C-terminal domain protein [Staphylococcus epidermidis VCU144] Length = 601 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +VE + + N G L+ L+ V ++ A L L +R I + + Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I+ L+ G + ++ ++L EG+DIPE V +L K S IQ +GR R Sbjct: 490 RAETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTK-----SSIIFIQQLGRGLR 544 Query: 681 NVNSK 685 +K Sbjct: 545 KSTNK 549 >gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] Length = 425 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ + V MHS+++ +R +I+R+ + G+ ++L+ +++ Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + LV D D E + + IGR AR Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337 >gi|261840195|gb|ACX99960.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 52] Length = 621 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177 N KI P N+S+ + F + + DQ AI ++ + S + L++G Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTHDQQNAIKEIQSDLTSPIACKRLIIGDV 261 Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218 G GKT +A ++ A ++MAP ILA QLY+E F P Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303 >gi|226487072|emb|CAX75401.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] Length = 647 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R L+ V TKR + LT L R V MH + +R + + G+ ++L+ ++ Sbjct: 214 RTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNILIATDVAS 273 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 GLDI V D F I IGR AR+ Sbjct: 274 RGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARS 306 >gi|289578512|ref|YP_003477139.1| primosomal protein N' [Thermoanaerobacter italicus Ab9] gi|289528225|gb|ADD02577.1| primosomal protein N' [Thermoanaerobacter italicus Ab9] Length = 732 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644 L + T+R+ D+ ++ N RV M + K +I D R GK D+L+G ++ + Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544 Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 G DIP LV ++ AD L R+ L Q GRA R Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus] Length = 728 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ V TK+ A+ + +L + I +H + + ER + + D R GK VLV ++ Sbjct: 542 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 601 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692 GLDI V D + + IGR R N+ + I + DT Sbjct: 602 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 646 >gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] Length = 421 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++ + L + V MHS+++ +R ++ + + G+ ++LV +++ Sbjct: 246 RVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V L Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 404 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ TK+ + LTE + + N V MH ++ ER EI+ + R Sbjct: 263 DLYDTLTIT-----QAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFR 317 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV ++ D G ++ + I IGR+ R Sbjct: 318 GGTTRVLITTDVWARGIDVQQVSLV--INYDLPG---NRENYIHRIGRSGR 363 >gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4] gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4] gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] Length = 485 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332 >gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris] Length = 1900 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|317056475|ref|YP_004104942.1| primosomal protein N' [Ruminococcus albus 7] gi|315448744|gb|ADU22308.1| primosomal protein N' [Ruminococcus albus 7] Length = 817 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Query: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLK---NGKIWTPHRSWSINNHSKDI 138 + ++ +K+ E+ E++ + SV+ L + + ++K + + + N + Sbjct: 205 ADLTPKQKKVVELLEESGSASVKELCYMTGCTSTIIKRLCEKDVIRVYEQEVMRNAVGEF 264 Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEA---MQR 194 T + D + +Q A ++ I + + LL GVTGSGKT KVI++ M + Sbjct: 265 TVRESPEDIVLNDEQKMAYNGIMNLIRTEKPAGALLYGVTGSGKTSVFIKVIDSVIKMGK 324 Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHN 220 AI++ P L Q+ + FK F N Sbjct: 325 TAIMLVPEISLTPQMLARFKVLFGEN 350 >gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira defluvii] gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira defluvii] Length = 1157 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 ++ I+Q + S+E++ L+SSL++ Y++ + I G F + G ++I+ + D R Sbjct: 145 FTDAILQFRPDGSLEREALVSSLLRLGYRKGSVVEIPGEFSIRGGIVDIYSTAYAD-PLR 203 Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 V G+ IE I F P T + ++ + + P Sbjct: 204 VEFLGDTIESIRFFDPATQKSTDKIKQAWVLPARELIRP 242 >gi|282851939|ref|ZP_06261299.1| type III restriction enzyme, res subunit [Lactobacillus gasseri 224-1] gi|282556948|gb|EFB62550.1| type III restriction enzyme, res subunit [Lactobacillus gasseri 224-1] Length = 371 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 ++ + + + I ++ S ER I+ D R GK +L ++L+ EG D+P+C V Sbjct: 193 SQKIVKRFQDNGINAKHCDSTTPAKERDRIMNDFREGKIKILSNVDLISEGFDVPDCSCV 252 Query: 655 AIL 657 +L Sbjct: 253 ILL 255 >gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus DSM 15470] gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus DSM 15470] Length = 510 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V TKR A+++TE L +R +H ++ +R ++R + G D+LV ++ G Sbjct: 245 IVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVATDVAARG 304 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LDI G+ + + D + + + +GR R Sbjct: 305 LDI--SGVTHVYNFD---MPQDSETYVHRVGRTGR 334 >gi|256751660|ref|ZP_05492535.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749469|gb|EEU62498.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 405 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H +++ + +++ D G++DVLV ++ GLDIP + + DADK G Sbjct: 101 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 157 Query: 668 KTSLIQTIGRAARN 681 + L Q GR R+ Sbjct: 158 -SQLYQLRGRVGRS 170 >gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2 Length = 554 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 A + ++L+ TKR +++T YL +H + + ER ++R+ + GK ++V Sbjct: 369 ADKEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVA 428 Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695 ++ G+D+ G+ +++ D G + I GRA + V L+ + +K Sbjct: 429 TDVAARGIDVK--GISYVINYDMPGNIEDYVHRIGRTGRAG-TTGTAVSLFTEANSK 482 >gi|149374936|ref|ZP_01892709.1| helicase-related protein [Marinobacter algicola DG893] gi|149360825|gb|EDM49276.1| helicase-related protein [Marinobacter algicola DG893] Length = 1282 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 11/114 (9%) Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 QV V+ E Q+ R L +++ A+ + + + +R +H E + + R E + Sbjct: 614 QVHRVWGE-----QKQSRTLAFCVSRVHADFMADQFSRKGVRSAAVHGESE-MSRGEALE 667 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L G+ DV+ ++L EG+D+P V +L + SK +Q IGR R Sbjct: 668 KLENGQLDVIFSVDLFNEGVDLPAIDTVLLLRPTE-----SKILFLQQIGRGLR 716 >gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo sapiens] Length = 2083 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVI 587 >gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta] Length = 1920 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R + M +E + E E++R R + ++L+ +++ EG+DIP+C LV D E Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542 Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692 S +Q+ GR AR S I+ ADT Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566 >gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1] Length = 1141 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 21/208 (10%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ + R +++ + A +L E + F P V F + YD Sbjct: 13 LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 72 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + Sbjct: 73 FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 116 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G +++ +++ L Y+ D G F V G I++FP + +R+ Sbjct: 117 GSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 175 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379 +F N+IE + F P T + I V+++++ Sbjct: 176 LFDNEIETLRTFDPETQRSIDKVDSVRL 203 Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VLV ++ G+D+P Sbjct: 817 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 874 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 + I ADK G L Q GR R+ + YA +T + Q + +R E Sbjct: 875 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 925 >gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03] gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03] Length = 485 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332 >gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens] Length = 674 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 297 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 348 >gi|157704331|gb|ABV68854.1| elongation initiation factor 4A [Trichoplusia ni] Length = 171 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD +++A + ++ T+R + LTE ++ R+ V MH ++ ER I+R R Sbjct: 30 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHGRDFTVSAMHGDMDQREREVIMRQFR 84 Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654 G VL+ +LL G+D+ + V Sbjct: 85 TGSSRVLITTDLLARGIDVQQVSCV 109 >gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum] Length = 402 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + ++ TKR LTE + + N V MH ++ ER +I++D R Sbjct: 261 DLYDTLTVTQS-----VIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFR 315 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ +L G+D+ + LV D ++ I IGR+ R Sbjct: 316 AGDSRVLITTDLWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 361 >gi|148237065|ref|NP_001080139.1| eukaryotic translation initiation factor 4A2 [Xenopus laevis] gi|27371050|gb|AAH41252.1| Eif4a2-prov protein [Xenopus laevis] Length = 263 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V +H ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 185 TRRKVDWLTEKMHSRDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 244 Query: 651 CGLVAILD--ADKEGFLRS 667 LV D ++E ++ S Sbjct: 245 VSLVINYDLPTNRENYIHS 263 >gi|260175390|ref|ZP_05761802.1| primosomal protein N' (replication factor Y) [Bacteroides sp. D2] gi|315923620|ref|ZP_07919860.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697495|gb|EFS34330.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 818 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694 >gi|257484414|ref|ZP_05638455.1| transcription-repair coupling factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 546 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ A +R +++ + A +L E K F P V +F + YD Sbjct: 21 LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + + L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE++++ L R L+ Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220 Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L + + IE Y E TLF+Y+ Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275 Query: 466 PEDSLLF 472 P+D+ +F Sbjct: 276 PQDTQVF 282 >gi|239928514|ref|ZP_04685467.1| putative ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291436839|ref|ZP_06576229.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291339734|gb|EFE66690.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 719 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ LT AE+ T+YL R RV + +R++ DL + LV + L G Sbjct: 253 IVYALTVAAAEETTDYLRRRGFRVASYTGRTENADRLQAEADLLENRVKALVATSALGMG 312 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 D P+ G V L G S + Q +GRA R V +L Sbjct: 313 FDKPDLGFVVHL-----GSPSSPIAYYQQVGRAGRGVAHADVL 350 >gi|224071778|ref|XP_002303572.1| predicted protein [Populus trichocarpa] gi|222841004|gb|EEE78551.1| predicted protein [Populus trichocarpa] Length = 563 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 R +D L R ++ +H ++ L R I++ + G+ VLV L GLD+PEC Sbjct: 427 RQLKDAVFKLEARGMKAAELHGDLGKLGRSTILKKFKSGEVRVLVTNELAARGLDVPECD 486 Query: 653 LVAILD 658 LV LD Sbjct: 487 LVVNLD 492 >gi|221060158|ref|XP_002260724.1| ATP-dependent DNA helicase [Plasmodium knowlesi strain H] gi|193810798|emb|CAQ42696.1| ATP-dependent DNA helicase, putative [Plasmodium knowlesi strain H] Length = 1252 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V +K+ E++ +L E+ + VR H+++ E+ E + ++V G Sbjct: 285 LIYVTSKKECENIFSFLKEKGLLVRMYHADLSNDEKKEAHEKFLKDEVQIIVATVAFGMG 344 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689 +D P+ + GF RS + +Q +GRA R N N++ IL+ Sbjct: 345 IDKPDIRRII-----HYGFSRSLEAYVQQVGRAGRDNSNAEAILF 384 >gi|190344782|gb|EDK36533.2| hypothetical protein PGUG_00631 [Meyerozyma guilliermondii ATCC 6260] Length = 413 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI++ R G +VLV ++ EGLDI E L+ D+ S IQ +GR R Sbjct: 8 EIVKKFRSGDINVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 62 Query: 683 NSKVIL 688 + KV+L Sbjct: 63 DGKVLL 68 >gi|239917090|ref|YP_002956648.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC 2665] gi|281414448|ref|ZP_06246190.1| transcription-repair coupling factor [Micrococcus luteus NCTC 2665] gi|239838297|gb|ACS30094.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC 2665] Length = 1218 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%) Query: 273 IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327 IVV+ V + G+G + V L+ G+ + ++++L Y R D+ RG Sbjct: 141 IVVAPVRAVLQPLVAGLGELSP-----VTLRTGEERDFDGVVAALADAAYSRVDMVSRRG 195 Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363 F V G I++FP ED R+ FG+++E++ F Sbjct: 196 EFAVRGGLIDVFPP-TEDYPVRIEFFGDEVEQMRWF 230 >gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1] gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1] Length = 1095 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 11/144 (7%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613 P+E R Q E + D ++ Q+G ++ K +A + + + I + + Sbjct: 721 PIETHVIRFQEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQ 780 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 E K LE++ + G+FDVLV ++ GLD+P + I +A+ G + L Q Sbjct: 781 MEGKKLEKLMLA--FMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 834 Query: 674 TIGRAARNVNSKVILYADTITKSI 697 GR R+ N K Y T S+ Sbjct: 835 MRGRVGRS-NKKAFCYFITPPDSV 857 >gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis] gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis] Length = 518 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 90/200 (45%), Gaps = 23/200 (11%) Query: 519 NCLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI- 575 N +RP T++ SAT C+ I+V+ + G + E TQ+ +++ + Sbjct: 279 NNVRPDRQTLLFSATFKKKVEHLCRDILVDPVRVVIGELG---EANEDVTQIVHIFNSMP 335 Query: 576 --------NLAAQQGLRILLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626 NL + +L +TK++ +E+L L + + V +H ++ ER +++ Sbjct: 336 SKWEWLTQNLVSFASAGSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLG 395 Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 + + +LV ++ GLDIP V D ++ + + T I GRA N+ Sbjct: 396 QFKKREIPILVATDVAARGLDIPSIKTVINYDVARD--ITTHTHRIGRTGRAGEKGNAYT 453 Query: 687 IL------YADTITKSIQLA 700 +L +A + +++++A Sbjct: 454 LLTQSDQNFAGDLVRNLEIA 473 >gi|148550419|ref|YP_001270521.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1] gi|148514477|gb|ABQ81337.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1] Length = 692 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L L E +RV +H +K E+ EI+ + + G +LV ++ G+D+P L+ Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 565 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695 I + ++ G L Q GR R V+ V+LY +++ Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603 >gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori str. 301020] Length = 1150 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ A +R +++ + A +L E K F P V +F + YD Sbjct: 21 LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + + L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE++++ L R L+ Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220 Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L + + IE Y E TLF+Y+ Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275 Query: 466 PEDSLLF 472 P+D+ +F Sbjct: 276 PQDTQVF 282 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|325275147|ref|ZP_08141120.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51] gi|324099719|gb|EGB97592.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51] Length = 692 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E+L L E +RV +H +K E+ EI+ + + G +LV ++ G+D+P L+ Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 565 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695 I + ++ G L Q GR R V+ V+LY +++ Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603 >gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66] gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66] Length = 1167 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID +++ Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 +V + + + + + L +G + L+ L + YK+ + +G + + Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 442 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L ++ R ++ V + +L E L I Y+ E+ ++R E I+ L G+ +VL Sbjct: 243 LKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVL 302 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ G+DIP+ V D RS + + IGR R Sbjct: 303 VATDVAARGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341 >gi|238024884|ref|YP_002909116.1| DEAD/H associated domain-containing protein [Burkholderia glumae BGR1] gi|237879549|gb|ACR31881.1| DEAD/H associated domain protein [Burkholderia glumae BGR1] Length = 1632 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615 P+E A E VYD I A L+ V T+RMAE L +L ER + + H Sbjct: 345 PLEPVMANDVWERVYDRIAELAAGHRTTLVFVNTRRMAERLARHLGERLGHDLIAAHHGS 404 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R + + L+ G+ +LV L G+DI E LV + G R +Q + Sbjct: 405 LAKESRFDAEQRLKHGRLKLLVATASLELGIDIGEVELVCQI-----GSPRGIAPFLQRV 459 Query: 676 GRAARNVNS 684 GR+ V Sbjct: 460 GRSGHQVGG 468 >gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9] gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9] Length = 1131 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 21/212 (9%) Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKES 249 +P +++ + A ++ E F P V +F + YD P A D E+ + Sbjct: 35 QPLVILTADPQAARRIADELPFFDPELEVAFFPDWETLPYDQLSPHA-----DLVSERLA 89 Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309 ++ ++R + D IV + + + + VE + LK GD ++ +L Sbjct: 90 TLW----KLRQG-------KADVIVTAVPTAMGRLAPVEFLAGRTFLLKAGDRLDADQLR 138 Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369 + L Y G F V G I++FPS + +R+ +F ++I+ + F T + Sbjct: 139 ADLALAGYTHVTQVYAPGEFSVRGGLIDLFPSGAA-LPYRIELFDDEIDTLRTFDVDTQR 197 Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401 + V +++ + T + ++ +E Sbjct: 198 TLYPVNDVRLLPAREFPTDEGGVTAFRQHFRE 229 Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 6/88 (6%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 M E LTE L E RV+ H +++ E +++RD +F+VL+ ++ G+DIP Sbjct: 815 MREKLTELLPE--ARVQVAHGQMRERELEQVMRDFNQQRFNVLLCSTIIETGIDIPNANT 872 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681 + I AD+ G L Q GR R+ Sbjct: 873 IIIHRADRFGL----AQLHQLRGRVGRS 896 >gi|160883094|ref|ZP_02064097.1| hypothetical protein BACOVA_01062 [Bacteroides ovatus ATCC 8483] gi|156111566|gb|EDO13311.1| hypothetical protein BACOVA_01062 [Bacteroides ovatus ATCC 8483] Length = 818 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D GK D+L+G ++ +GLD +V IL+AD + R+ + Q Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R N +V+L +I I Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694 >gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1] gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1] Length = 1054 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 R+A LY RN+ R+ H + E EI+ G FDVL+ ++ GLDI Sbjct: 732 RIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLATTIVETGLDI 791 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ 698 PE + I +D+ G L Q GR R + + Y +T++ Q Sbjct: 792 PEANTILIERSDRLGL----AQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQ 839 >gi|322706990|gb|EFY98569.1| DEAD-box helicases & Helicase superfamily domain-containing protein [Metarhizium anisopliae ARSEF 23] Length = 397 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE L R+ V MH ++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 272 TRRKVDWLTEKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 332 VSLVINYDLPANRENYI 348 >gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1152 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ A +R +++ + A +L E K F P V +F + YD Sbjct: 21 LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + + L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE++++ L R L+ Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220 Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L + + IE Y E TLF+Y+ Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275 Query: 466 PEDSLLF 472 P+D+ +F Sbjct: 276 PQDTQVF 282 Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 828 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 885 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 886 NTIIIERADKFGL----AQLHQLRGRVGRS 911 >gi|302502754|ref|XP_003013338.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371] gi|291176901|gb|EFE32698.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371] Length = 455 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L R+ V MH +++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 331 VSLVINYDLPANRENYI 347 >gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii ATCC 33200] gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii ATCC 33200] Length = 484 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332 >gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855] gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855] Length = 423 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ + V MHS+++ +R +I+R+ + G+ ++L+ +++ Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + LV D D E + + IGR AR Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337 >gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36] gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus sanguinis SK36] Length = 1167 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID +++ Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 +V + + + + + L +G + L+ L + YK+ + +G + + Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|118617568|ref|YP_905900.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99] gi|118569678|gb|ABL04429.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99] Length = 743 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +R+ MH + E+ + R G DVLV ++ G+D+P ++ ++DAD+ G Sbjct: 558 GLRLALMHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI- 616 Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694 + L Q GR R + + L A ++ Sbjct: 617 ---SQLHQLRGRIGRGEHPSLCLLASWVS 642 >gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis] Length = 398 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T++ + L+ L + N V MH ++K ER +++ D R Sbjct: 257 DLYDSLTIT-----QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GK VL+ ++ G+D+ + LV D + + I IGR+ R Sbjct: 312 SGKARVLISTDVWARGIDVQQISLVINYDIPD-----NLENYIHRIGRSGR 357 >gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM 15272] gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM 15272] Length = 1169 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 V++++GD E L+ L Y R D+ RG F V G +++FP E+ R+ +G Sbjct: 153 VEIRVGDDHELDALVRDLAAAAYTRVDLVERRGEFAVRGGIVDVFPP-TEEHPLRLEFWG 211 Query: 355 NDIEEISEF 363 + +EEI F Sbjct: 212 DTVEEIRRF 220 >gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968] gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) [Legionella longbeachae NSW150] gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968] gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) [Legionella longbeachae NSW150] Length = 569 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 LA + +++ V TK E++ E L ++ +R +H ++ R II R G D+L Sbjct: 240 LAVEDYQGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDIL 299 Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693 V ++ GLD+ V D D E + + IGR R S V IL+ Sbjct: 300 VATDVAARGLDVERVTHVINYDLPHDNETY-------VHRIGRTGRAGRSGVAILFVTPK 352 Query: 694 TKSIQLAIDETTRRR 708 + +I+ TR+R Sbjct: 353 EGRLITSIERHTRQR 367 >gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] Length = 425 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ + V MHS+++ +R +I+R+ + G+ ++L+ +++ Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + LV D D E + + IGR AR Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337 >gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 580 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +GL I+ T TKR A + + L +R +H ++ R + +R R GK DVLV Sbjct: 295 ADGRGLTIVFT-RTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHGKVDVLV 353 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 ++ G+DI + V ++ + + + IGR R N+ + Sbjct: 354 ATDVAARGIDIDDVTHVVNYQCPED-----EKTFLHRIGRTGRAGNTGTAV 399 >gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328] gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328] Length = 1168 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 58/289 (20%), Positives = 124/289 (42%), Gaps = 32/289 (11%) Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V+ + + A L +E+ N N E+F P + S+ Sbjct: 49 INKPLVVVVEDNMRARNL-TEYLNDIEENICEFF-------------PSRELNFYNAKSL 94 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310 ++ + R + LL I+V++ + + +S ++ +K D + +EL Sbjct: 95 DDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQE 154 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L +Y+R D +G F + G ++IFP H R+ +F ++I+ + F T + Sbjct: 155 KLRALKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL---IELEKEGRLLEA-QRLEQRI 426 I + + + I + S + + + I++ L R+ I E + + ++L + I Sbjct: 214 IEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYI 273 Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 DLE SC +LT ++ T+F+Y +D+++ +++ Sbjct: 274 RSDLEYEIDLVSC--------FLTKKD----YDTVFDYFADDTIMMIED 310 >gi|158300210|ref|XP_001689233.1| AGAP012358-PB [Anopheles gambiae str. PEST] gi|158300212|ref|XP_320199.4| AGAP012358-PA [Anopheles gambiae str. PEST] gi|157013048|gb|EDO63299.1| AGAP012358-PB [Anopheles gambiae str. PEST] gi|157013049|gb|EAA00143.4| AGAP012358-PA [Anopheles gambiae str. PEST] Length = 598 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Query: 581 QGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 QGL +L+ V +K A+ L TE +Y+ + V +HS+ ER ++R R GK +L+ Sbjct: 387 QGLHPPVLVFVQSKDRAQQLFTELIYD-GLNVDVIHSDRTQRERDNVVRAFREGKIWILI 445 Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 L+ G+D LV D F S S + IGR R Sbjct: 446 CTELMSRGIDFKGVNLVVNYD-----FPPSTISYVHRIGRTGR 483 >gi|50290013|ref|XP_447438.1| hypothetical protein [Candida glabrata CBS 138] gi|74661246|sp|Q6FQQ6|IF4A_CANGA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=Translation initiation factor 1 gi|49526748|emb|CAG60375.1| unnamed protein product [Candida glabrata] Length = 396 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD I++ + ++ T+R E+LT+ L N V ++S++ ER I+++ R Sbjct: 254 DLYDSISVT-----QAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFR 308 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665 G +L+ +LL G+D+ + LV D +KE ++ Sbjct: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYI 346 >gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens] gi|78099254|sp|Q8IYD8|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM; AltName: Full=ATP-dependent RNA helicase FANCM; AltName: Full=Fanconi anemia-associated polypeptide of 250 kDa; Short=FAAP250; AltName: Full=Protein Hef ortholog gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens] gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo sapiens] gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct] Length = 2048 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVI 587 >gi|322388970|ref|ZP_08062541.1| helicase [Streptococcus parasanguinis ATCC 903] gi|321144339|gb|EFX39746.1| helicase [Streptococcus parasanguinis ATCC 903] Length = 654 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 563 SARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +V+ + +I+ G ++ L+ +K+ A DL L ++ R + E Sbjct: 430 TSEERVKHIIKKIDFYGVSGEKVKGLMFCSSKQEAHDLASKLNQKGKHCRALTGEDNMET 489 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E++ L G+ D ++ +++ EG+DIP V +L +S +Q +GR R Sbjct: 490 RNEVVAQLEKGELDYILTVDIFNEGIDIPSVNQVVMLRNT-----QSSIVFVQQLGRGLR 544 Query: 681 NVNSK 685 SK Sbjct: 545 KHESK 549 >gi|313159822|gb|EFR59178.1| transcription-repair coupling factor [Alistipes sp. HGB5] Length = 1108 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 16/185 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY-VPRTDTYIEKESSINEQI 255 + +A ++ AA L ++F N V +F S Y + AY +++ +++N Sbjct: 57 VFVAEDRDAAAYLMNDFYNLLDEKQVYFFPS--SYKRSVAYGAEDAQGVVQRTAAMN--- 111 Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 A + + + + + E+ + + +K+GDS+ L +LV Sbjct: 112 ------AVKGFTKGYLIVCTYPEALAERVADAETLRRDTIAVKVGDSISIAVLEDALVDA 165 Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIR 372 + R D G + V G +++F S E +R+ FG++++ I F L+ K+ Sbjct: 166 NFTRVDFVYEPGQYSVRGGIVDVF-SFSESKPYRIDFFGDEVDSIRRFNISSQLSADKLD 224 Query: 373 NVETI 377 VE I Sbjct: 225 RVEII 229 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV H ++ + +I D G+FDVLV ++ G+DIP + + +A G Sbjct: 788 RVGVGHGKMPAEKLERLIMDFIYGEFDVLVATTIVENGIDIPNANTIIVNNAQNFGL--- 844 Query: 668 KTSLIQTIGRAARNVNSKVILY 689 + L Q GR R+ N K Y Sbjct: 845 -SDLHQLRGRVGRS-NQKAYCY 864 >gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1158 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 61/321 (19%), Positives = 125/321 (38%), Gaps = 33/321 (10%) Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 SR K LL GV + + + +P +++ N+ A + Y++ + +E F Sbjct: 21 SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDELELF 80 Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285 + T T + ++ +I L R ++ + Y + Sbjct: 81 ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128 Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345 + + + +GD + +L L + Y R+++ + G F + GD ++++P E Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188 Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405 R+ FG++I+ I F LT Q R++E + P T+ A ++ Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229 Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 +L++ GR L+ ++ E + Q ++ RYL P +L +Y+ Sbjct: 230 TAEDLDRAGRELDGDLPKEAAASLAIAQEALANGQLPDDCDRYLDYLLP--ESFSLLDYL 287 Query: 466 PEDSLLFVDESHVTIPQISGM 486 P LL ++ + + M Sbjct: 288 PAKGLLLFNDWQLIAESVKNM 308 >gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.] Length = 1171 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 64/321 (19%), Positives = 133/321 (41%), Gaps = 39/321 (12%) Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 LLK +E+ G++GS K + ++ + P +V+ P+ +A ++ FF Sbjct: 14 LLKSFSEKEQGIDFEGLSGSKKAYIAFRLYIKHKLPTLVIVPSVKESADFVNDLNYFFNG 73 Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSV 278 + P P+ + + S NE DR+R + +++ + I+V++ Sbjct: 74 QNI-----------PVMIFPQYNVSSKSVSYHNEIASDRIR-TLYKAIESQIPPIIVTTP 121 Query: 279 SCIYG----IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334 + G + ++S++I + G+ +E+ ++ LV Y R I G + + G Sbjct: 122 GALAGRLIPKNELLNFSELIAE---GEEIERDRFIAKLVAGGYCRTAIVEEPGDYCIRGG 178 Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 I+IF D R+ + + IE I F + + ++ V I + LN Sbjct: 179 IIDIFTPLYPD-PLRIDLSDDFIESIRFFSAASQRSLKPVHEAIILPAKEAIIKANDLNY 237 Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 + +I+E I + K +++ ++ G IE + + + Sbjct: 238 IVSHIRELASGLNIPVTKVRTIIDK-------------IKNEGVLPEIEGLNCLVYSK-- 282 Query: 455 GEPPPTLFEYIPEDSLLFVDE 475 P + F+YIP++S++ +DE Sbjct: 283 ---PDSFFDYIPKNSIIIMDE 300 >gi|300867169|ref|ZP_07111832.1| type III restriction enzyme, res subunit [Oscillatoria sp. PCC 6506] gi|300334783|emb|CBN56998.1| type III restriction enzyme, res subunit [Oscillatoria sp. PCC 6506] Length = 512 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%) Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI+L +R+L +L + A++ T Y + + + + ER +I+ Sbjct: 315 EISLCTDGKIRVLAGLLAQHYPHRTLIFTADNATVYRVSQEFLIPSITHQTPVKERHQIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685 R G+++ L+ ++L EG+D+P+ + IL S+ IQ +GR R N + Sbjct: 375 TQFRSGEYNTLIASHVLNEGVDVPDARIAIILSGTG-----SEREYIQRLGRVLRKGNDE 429 Query: 686 ---VILY 689 ILY Sbjct: 430 NKLAILY 436 >gi|297544787|ref|YP_003677089.1| primosomal protein N' [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842562|gb|ADH61078.1| primosomal protein N' [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 732 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644 L + T+R+ D+ ++ N RV M + K +I D R GK D+L+G ++ + Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544 Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 G DIP LV ++ AD L R+ L Q GRA R Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >gi|171778471|ref|ZP_02919629.1| hypothetical protein STRINF_00480 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282872|gb|EDT48296.1| hypothetical protein STRINF_00480 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 989 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 7/98 (7%) Query: 591 TKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 +++ A++L E +Y + + +H+ ++ +R E ++ ++ GK ++V +++ EG+DI Sbjct: 275 SRKRADELYEKIYSQYKKYNPVVIHTGIRPTQRKENLQQVKSGKAKIVVCVDMFGEGIDI 334 Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 P + AI D RS +Q IGR AR +K+ Sbjct: 335 PTLKIAAIHDK-----YRSLPITLQFIGRFARTSGNKL 367 >gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo] Length = 1921 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%) Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 EV+ ++ E++R R + ++L+ +++ EG+DIP+C LV D E S +Q+ Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549 Query: 675 IGRAARNVNSKVILYADT 692 GR AR S I+ ADT Sbjct: 550 KGR-ARAPISNYIMLADT 566 >gi|167772295|ref|ZP_02444348.1| hypothetical protein ANACOL_03672 [Anaerotruncus colihominis DSM 17241] gi|167665398|gb|EDS09528.1| hypothetical protein ANACOL_03672 [Anaerotruncus colihominis DSM 17241] Length = 816 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 7/97 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+++ ++L E + + M + + + D GK+D+++G ++ +GLD P Sbjct: 571 TQKVEQELGELFPDARVLRMDMDTTMARFSHEKHFADFSAGKYDIIIGTQMVAKGLDFPN 630 Query: 651 CGLVAILDADK-------EGFLRSKTSLIQTIGRAAR 680 LV +L AD F R+ + Q +GR+ R Sbjct: 631 VTLVGVLSADSALYAQDYRSFERAFSLFTQVVGRSGR 667 >gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare] gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 764 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 13/134 (9%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P+ S RT + D+ I + A+ G I+ T TKR A++++ L +I +H ++ Sbjct: 318 PLTTTSKRTILSDL---ITVYAKGGKTIVFT-RTKRDADEVSLALTT-SIASEALHGDIS 372 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674 +R + R GKF VLV ++ GLDIP L+ L D E F+ RS + Sbjct: 373 QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 428 Query: 675 IGRAARNVNSKVIL 688 GRA + N+ ++ Sbjct: 429 -GRAGKAGNAILMF 441 >gi|305666665|ref|YP_003862952.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170] gi|88707470|gb|EAQ99714.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170] Length = 632 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 12/110 (10%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 ++ V T+RMA+DLT YL Y H + E+ E + K + +V N G Sbjct: 231 IVYVRTRRMAQDLTNYLNANKCSASYFHGGLSKEEKKERLNKWLDNKTNTMVATNAFGMG 290 Query: 646 LDIPECGLVA---ILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691 +D P+ LV I D + F Q GRA RN N +K IL + Sbjct: 291 IDKPDVELVVHYQIPDCIENYF--------QEAGRAGRNGNPAKAILLTN 332 >gi|84393833|ref|ZP_00992578.1| helicase-related protein [Vibrio splendidus 12B01] gi|84375528|gb|EAP92430.1| helicase-related protein [Vibrio splendidus 12B01] Length = 580 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 25/161 (15%) Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556 L + GF P+ M + P+ +++ L+P A+ G ++ E +++EQ R T Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLKP------ASTGRYK-EAELDMVIEQSKRAT---- 237 Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 + D+I A+ L I++ T R A+++ L E + + + Sbjct: 238 ------------PQIVDQIIELAKDKLGIMVFAATVRHAQEILGLLPEGESSI--VIGDT 283 Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 TLER +II D + K LV +++L G D P L+AIL Sbjct: 284 PTLERDQIISDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324 >gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1150 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 A +L E K F P V +F + YD + P D ++ +S+ ++ + H Sbjct: 51 AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 +VV + ++ + + + L +G ++ + + + L Y+ D Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 G F V G I++FP + +R+ +F ++IE + F P T + I VE++++ Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435 L R L+KE R +R D + L + Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + IE Y E TLF+Y+P+D+ +F Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1150 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231 + G+ + +A+ A +R +++ + A +L E K F P V +F + YD Sbjct: 21 LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80 Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291 + P D ++ +S+ ++ + H +VV + ++ + + Sbjct: 81 FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124 Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351 + L +G ++ + + + L Y+ D G F V G I++FP + +R+ Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183 Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411 +F ++IE + F P T + I VE++++ L R L+ Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220 Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 KE R +R D + L + + IE Y E TLF+Y+ Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275 Query: 466 PEDSLLF 472 P+D+ +F Sbjct: 276 PQDTQVF 282 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23] Length = 665 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L G L+ V TKRMA+ L+++L ++ +H + ER + R G+ +L Sbjct: 430 LHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPIL 489 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 V + GLDIP V D + + IGR R N+ + Sbjct: 490 VATAVAARGLDIPNVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 534 >gi|322701321|gb|EFY93071.1| DEAD/DEAH box RNA helicase [Metarhizium acridum CQMa 102] Length = 631 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G+R ++ ++R ++L ++LY + V MHSE ER +R R G+ +L+ + Sbjct: 363 GVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRAGQAPILIATGV 422 Query: 642 LREGLDI 648 G+D+ Sbjct: 423 TARGIDV 429 >gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM 21211] Length = 604 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 9/111 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R ++ TKR ++L L R + +H ++ +R + R G+ VLV ++ Sbjct: 242 RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLVATDVAA 301 Query: 644 EGLDIPECGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691 GLDIPE LV L D E ++ RS + GRA R + +++Y + Sbjct: 302 RGLDIPEIDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIVMYGE 346 >gi|224369718|ref|YP_002603882.1| UvrB2 [Desulfobacterium autotrophicum HRM2] gi|223692435|gb|ACN15718.1| UvrB2 [Desulfobacterium autotrophicum HRM2] Length = 37 Score = 43.5 bits (101), Expect = 0.15, Method: Composition-based stats. Identities = 19/34 (55%), Positives = 25/34 (73%) Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180 Y P+GD P AI L++G+ + EK Q+LLGVT SG Sbjct: 4 YGPAGDHPKAIDYLVRGVKADEKYQVLLGVTRSG 37 >gi|325922280|ref|ZP_08184061.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865] gi|325547233|gb|EGD18306.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865] Length = 714 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 +RV +H +K E+ + + D + G D+LV ++ G+D+P L+ I +A++ G Sbjct: 538 GVRVALVHGRMKPAEKQKAMLDFKQGHTDLLVATTVIEVGVDVPNASLMIIENAERLGL- 596 Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689 L Q GR R +S V+LY Sbjct: 597 ---AQLHQLRGRVGRGAAASSCVLLY 619 >gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis SK353] Length = 1167 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID +++ Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 +V + + + + + L +G + L+ L + YK+ + +G + + Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|307264798|ref|ZP_07546360.1| primosomal protein N' [Thermoanaerobacter wiegelii Rt8.B1] gi|306920056|gb|EFN50268.1| primosomal protein N' [Thermoanaerobacter wiegelii Rt8.B1] Length = 732 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644 L + T+R+ D+ ++ N RV M + K +I D R GK D+L+G ++ + Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544 Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 G DIP LV ++ AD L R+ L Q GRA R Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >gi|302667761|ref|XP_003025461.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517] gi|291189571|gb|EFE44850.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517] Length = 455 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LT+ L R+ V MH +++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 331 VSLVINYDLPANRENYI 347 >gi|221486494|gb|EEE24755.1| DEAD box ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1] Length = 1190 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 V E+ A + + ++ V T++ E L ++ + ++ RV +H+ ++ +R + R Sbjct: 674 VASELLAAEEDTHKCIVFVETQQEVEQLAQHPFLQSWRVAPLHAGLEQEQRDTNLSRFRS 733 Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688 G+ VL+ +++ GLD+P LV L + ++ I GRA R +V V+L Sbjct: 734 GEAPVLIATDVVARGLDVPAVTLVVHLHPPV-----NPSTYIHRSGRAGRGGHVGDSVVL 788 Query: 689 YADTITKSIQLAIDETTRR 707 Y+ + + + +T R Sbjct: 789 YSSSERGKLAEVVQQTRTR 807 >gi|212537071|ref|XP_002148691.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224] gi|210068433|gb|EEA22524.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224] Length = 666 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 LTE + I RY+ + R E + + G++ VL+ L EG DIP V + Sbjct: 319 LTEAFRDNGIDARYITANTPRQTRNEELEAFKKGEYPVLLNCGLFTEGTDIPNIDCVVLA 378 Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680 RSK+ LIQ IGR R Sbjct: 379 RP-----TRSKSLLIQMIGRGLR 396 >gi|317026087|ref|XP_001388951.2| ATP-dependent DNA helicase mph1 [Aspergillus niger CBS 513.88] gi|189082535|sp|A2Q8R2|MPH1_ASPNC RecName: Full=ATP-dependent DNA helicase mph1 Length = 1124 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%) Query: 580 QQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDLR 629 Q R+++ V + AE++T L YE IR V S K E +++I++ + Sbjct: 690 QPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFK 749 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G ++ +V ++ EGLDI E L+ D+ S ++Q +GR R + K+ L Sbjct: 750 KGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRSGKITL 803 >gi|156717646|ref|NP_001096363.1| eukaryotic translation initiation factor 4A2 [Xenopus (Silurana) tropicalis] gi|134024000|gb|AAI35872.1| LOC100124955 protein [Xenopus (Silurana) tropicalis] Length = 265 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V +H ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 187 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 246 Query: 651 CGLVAILD--ADKEGFLRS 667 LV D ++E ++ S Sbjct: 247 VSLVINYDLPTNRENYIHS 265 >gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens] Length = 622 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K + + EYL + + +H ER + I R GK DVLV ++ + Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704 GLD P V D +E + + IGR R+ N+ + T I A DE+ Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543 Query: 705 TRRREKQLEHNKKHNINP 722 K L+ K + P Sbjct: 544 VLMDLKALQLEAKQKVPP 561 >gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134] gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134] Length = 1159 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 53/266 (19%), Positives = 115/266 (43%), Gaps = 23/266 (8%) Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198 ++F +++ Q + +L + I +++Q G+TGS +F ++++ E +RP ++ Sbjct: 25 SYFLSKSELSQHFAQSLPLQKLGEAIAHSQRIQAK-GLTGSSLSFAVSQLFEGRERPVLL 83 Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----E 253 + +K AA ++ + V ++ P +Y R IE+ + N E Sbjct: 84 ILNDKEEAAYYLNDLEALRKEENVLFY--------PGSY--RRPYQIEETDNANILLRAE 133 Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313 ++R+ +L IV + + + + + +++ + D + + L Sbjct: 134 VLNRVNSRKKPAL------IVTYPDALFEKVVTRKELDRQTLKVTVNDKLSLDFINEMLF 187 Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373 + ++KR D G F V G +++F S D +R+ FG++++ I F + + Sbjct: 188 EYRFKRVDFVTEPGEFSVRGGIVDVF-SFSHDRPYRIEFFGDEVDSIRTFDVESQLSLDQ 246 Query: 374 VETIKIYANSHYVTPRPTLNTAMKYI 399 V+ I I N T + +KYI Sbjct: 247 VKKISIMPNVENKALEETRASFLKYI 272 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 14/161 (8%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613 P+E R E + D ++ Q+G ++ K +A + + + + V + Sbjct: 767 PIESNVVRFSEEVIRDAVSYEIQRGGQVFFIHNRIENIKEVAGLIQRLVPDAKVGVGHGQ 826 Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673 E K LE + G+FDVLV ++ GLD+P + I +A+ G + L Q Sbjct: 827 MEGKALEAKML--SFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 880 Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714 GR R+ N K Y T S+ + E R+R + LE Sbjct: 881 MRGRVGRS-NKKAFCYFITPPYSV---MTEDARKRIQALEQ 917 >gi|325288509|ref|YP_004264690.1| type III restriction protein res subunit [Syntrophobotulus glycolicus DSM 8271] gi|324963910|gb|ADY54689.1| type III restriction protein res subunit [Syntrophobotulus glycolicus DSM 8271] Length = 537 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 30/203 (14%) Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652 + ++ T+ L E+ R ++ E ER+ ++D G +DVL LL EG D P Sbjct: 242 KTSQKFTQILREKGFRAAEVNGESADRERL--LKDFDAGSYDVLCNSMLLTEGWDCPSVD 299 Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712 + +L K ++ Q +GR R K L L +D +L Sbjct: 300 CIVVLRPTK-----IRSLYCQMVGRGTRLFPGKEYL----------LLLDFLWHTERHEL 344 Query: 713 EHNKKHNINPQSVKEKIMEVID----PILLEDA---ATTNISIDAQQLSLSKKKGKAHLK 765 H + V +K+ E I+ P+ LE A A+ ++ I A++ +L+K+ L+ Sbjct: 345 CHPAHLICESEEVAKKMTENIEEAGCPVDLEAAEKQASEDV-IAAREEALAKQ-----LQ 398 Query: 766 SLRKQMHLAADNLNFEEAARIRD 788 +R + D L FE + + D Sbjct: 399 EMRNRKRKLVDPLQFEMSIQAED 421 >gi|317129245|ref|YP_004095527.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM 2522] gi|315474193|gb|ADU30796.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM 2522] Length = 678 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630 ++ I Q L + +L ++ E L + L I+V+ + K ER I+ +LR Sbjct: 295 LFAVIQAGLQGALMVPTEILAEQHKESLVDLLEPFGIKVQLLTGSTKVKERRAILEELRE 354 Query: 631 GKFDVLVGIN-LLREGLDIPECGLV 654 GK D+++G + L++EG+D GLV Sbjct: 355 GKIDIILGTHALIQEGVDFKNLGLV 379 >gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] Length = 484 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332 >gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2] gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2] Length = 1148 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 62/303 (20%), Positives = 125/303 (41%), Gaps = 49/303 (16%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232 +TG+ +A++ E P +++AP+ A +L+ E + F N ++ YD + Sbjct: 22 LTGAACATLVAEIAEHHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288 P + I S Q+ M+ +L++R V S ++G V Sbjct: 82 SPHQEI------ISSRLSTLYQLPAMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +K G + + L L Y+ D + G + G +++FP E + + Sbjct: 130 --------MKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE-LPY 180 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ F ++I+ + F T + + V+ I + + PT TA++ + + + Sbjct: 181 RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWR-DTF 235 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 E+++ +A+ + Q++ + G+ + Y + L EP P LF Y P + Sbjct: 236 EVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279 Query: 469 SLL 471 +LL Sbjct: 280 TLL 282 >gi|225023458|ref|ZP_03712650.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC 23834] gi|224943807|gb|EEG25016.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC 23834] Length = 533 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + + +H +K+ E+ ++ + G+ VLV ++ G+D+P L+ I A++ G Sbjct: 358 LTIGLVHGRMKSAEKATVMAEFAAGRIHVLVATTVIEVGVDVPNAALMVIEHAERMGL-- 415 Query: 667 SKTSLIQTIGRAARN--VNSKVILYADTI 693 + L Q GR R V+S V+L+A+ + Sbjct: 416 --SQLHQLRGRVGRGAAVSSCVLLFAEPL 442 >gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15] gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15] Length = 623 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L+ V TKRMA+ L+++L + +H + ER + + R G+ +LV + G Sbjct: 391 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARG 450 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 LDIP V D + + IGR R N+ + Sbjct: 451 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 486 >gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus norvegicus] Length = 523 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 + A++ + ++ V TKR +DLT + +H + ER ++ + R GK +L Sbjct: 205 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 264 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 + ++ GLD+ + V D + S + IGR AR+ N Sbjct: 265 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 306 >gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 604 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L QG R+L+ V KR A+ L YL + I +H + ER E + + G VL Sbjct: 374 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 433 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLDIP +V D + + IGR R Sbjct: 434 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 472 >gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length = 555 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 TKR A+ + + L ER V +H ++ + R + ++ R GK DVLV ++ G+DI Sbjct: 299 TKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLVATDVAARGIDI 356 >gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus] gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus] Length = 1921 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%) Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 EV+ ++ E++R R + ++L+ +++ EG+DIP+C LV D E S +Q+ Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549 Query: 675 IGRAARNVNSKVILYADT 692 GR AR S I+ ADT Sbjct: 550 KGR-ARAPISNYIMLADT 566 >gi|37519594|ref|NP_922971.1| primosome assembly protein PriA [Gloeobacter violaceus PCC 7421] gi|35210585|dbj|BAC87966.1| primosomal protein N' [Gloeobacter violaceus PCC 7421] Length = 809 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 14/109 (12%) Query: 591 TKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 T+R+A L+E + R +R + K R +I+ G+ DVLVG +L +GLD+P Sbjct: 572 TQRIAAQLSEQFPTLRVLRFDRDTTARKDAHR-QILEQFGRGEADVLVGTQMLTKGLDLP 630 Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARNVN-SKVIL 688 + LV IL AD G L R+ L Q GRA R +VIL Sbjct: 631 QVTLVGILAAD--GLLNLPDFRASERAFQLLTQVAGRAGRGSEPGRVIL 677 >gi|326389547|ref|ZP_08211114.1| primosomal protein N' [Thermoanaerobacter ethanolicus JW 200] gi|325994552|gb|EGD52977.1| primosomal protein N' [Thermoanaerobacter ethanolicus JW 200] Length = 732 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644 L + T+R+ D+ ++ N RV M + K +I D R GK D+L+G ++ + Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544 Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 G DIP LV ++ AD L R+ L Q GRA R Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv. syringae 642] Length = 1150 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 A +L E K F P V +F + YD + P D ++ +S+ ++ + H Sbjct: 51 AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 +VV + ++ + + + L +G ++ + + + L Y+ D Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 G F V G I++FP + +R+ +F ++IE + F P T + I VE++++ Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435 L R L+KE R +R D + L + Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + IE Y E TLF+Y+P+D+ +F Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum] Length = 637 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 ++ G L+ V TKR A+ L YLY + +V +H + +R + R G+ VLV Sbjct: 428 SEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVA 487 Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685 + GLDIP V D +D E ++ +T + +G A N K Sbjct: 488 TAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 538 >gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4] gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4] gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] Length = 423 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ + V MHS+++ +R +I+R+ + G+ ++L+ +++ Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + LV D D E + + IGR AR Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337 >gi|224054908|ref|XP_002194080.1| PREDICTED: interferon induced with helicase C domain 1 [Taeniopygia guttata] Length = 1073 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 44/159 (27%) Query: 604 ERNIRVRYM-----HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E I+ Y+ SE+K + E+ E+I R G ++L+ + EGLDI EC +V Sbjct: 791 EVGIKAHYLIGSGHKSEMKPMTQNEQREVIDKFRCGNVNLLIATTVAEEGLDIKECNIVI 850 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK----- 710 + G + ++ +++Q GRA AD T ++ ++ D RE Sbjct: 851 -----RYGLVTNEIAMVQARGRA----------RADESTYALVVSSDSGAVERESVNIYR 895 Query: 711 ---------------QLEH-NKKHNINPQSVKEKIMEVI 733 Q E+ NK HN QS+ EK M+V+ Sbjct: 896 EKMMYKAIQRVQKMPQEEYLNKIHNFQLQSIVEKQMKVM 934 >gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata] gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria annulata] Length = 394 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK + L + + + N V MH E+ ER +I++ R G+ VL+ +L GLD+ + Sbjct: 269 TKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRGLDVQQ 328 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D S+ S I IGR+ R Sbjct: 329 VSLVVNYD-----LPNSRESYIHRIGRSGR 353 >gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group] gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group] Length = 1375 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501 Query: 683 NSKVIL 688 NS +L Sbjct: 502 NSDYLL 507 >gi|47227923|emb|CAF97552.1| unnamed protein product [Tetraodon nigroviridis] Length = 366 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V +H ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 241 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 300 Query: 651 CGLV 654 LV Sbjct: 301 VSLV 304 >gi|314935617|ref|ZP_07842969.1| putative helicase [Staphylococcus hominis subsp. hominis C80] gi|313656182|gb|EFS19922.1| putative helicase [Staphylococcus hominis subsp. hominis C80] Length = 943 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +++ + ++ N G L+ L+ V K A ++ E L NI + + + Sbjct: 431 TSEERIKHIIEKTNYYGYSGSQLKGLIFVSRKEEATEIAEKLSLNNIPSKALIGSDTQNK 490 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R ++I +L GK + +V +NL EG+DIPE + +L + +S Q +GR R Sbjct: 491 RTKVINELVNGKINYIVTVNLFNEGIDIPEVNQIVMLRS-----TQSSIIFTQQLGRGLR 545 >gi|297737705|emb|CBI26906.3| unnamed protein product [Vitis vinifera] Length = 988 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 23/165 (13%) Query: 558 PVE---IRSARTQVEDVY----DEINLAAQQGLRILLTVLTK-------RMAEDLTEYLY 603 PVE I EDVY DE+ + + + I+ V+ + R A E + Sbjct: 749 PVETYTIEGCDAGFEDVYQMMLDELEVGGK--IYIVYPVIEQSEQLPQLRAASTDLETIS 806 Query: 604 ER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 R + +H +K+ E+ E +R R G+ ++L+ ++ G+D+P+ ++ +++A++ Sbjct: 807 SRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAER 866 Query: 662 EGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETT 705 G L Q GR R V SK +L + T + +L + E + Sbjct: 867 FGI----AQLHQLRGRVGRGVRKSKCLLVSSTASGLNRLKVLENS 907 >gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName: Full=Dicer-like protein 2b; Short=OsDCL2b Length = 1377 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501 Query: 683 NSKVIL 688 NS +L Sbjct: 502 NSDYLL 507 >gi|195058057|ref|XP_001995378.1| GH23128 [Drosophila grimshawi] gi|193899584|gb|EDV98450.1| GH23128 [Drosophila grimshawi] Length = 1294 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E+++++ D R G +VLV ++ EGLD+ E L+ D + T +Q IGR Sbjct: 476 EQLQVMGDFRGGICNVLVATSIAEEGLDVGEVDLIVCFDISSS----NPTRFVQRIGRTG 531 Query: 680 RNVNSKVILYA-----DTITKSIQLAIDETTRR 707 R V++ + K + + D+T R+ Sbjct: 532 RKKQGAVVMLVTEGREQQLLKEVLASRDQTNRK 564 >gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans] Length = 544 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 28/193 (14%) Query: 518 WNCLRPTTIV----------VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567 W+ P IV + T GS +L + I +QI+ ++D + S + Sbjct: 325 WSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRI--KQIVE---VMDDHQKYSSLQDH 379 Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627 + D+Y +G RI++ TKR A++L+ L + +H ER ++R+ Sbjct: 380 LRDIY--------EGGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLRE 431 Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687 + G+ +LV ++ GLDI + V D K + I IGR AR N Sbjct: 432 FKDGRTQILVATDVASRGLDIKDIRYVVNFDMPK-----NIEDYIHRIGRTARAGNKGTS 486 Query: 688 LYADTITKSIQLA 700 + T + + +LA Sbjct: 487 ISFFTASNNGRLA 499 >gi|329118091|ref|ZP_08246803.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200] gi|327465751|gb|EGF12024.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200] Length = 679 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 E L L E NI + +H +K E+ ++ + G+ +VLV ++ G+D+P L+ Sbjct: 495 EQLQTALPELNIGL--VHGRMKATEKATVMAEFAAGRLNVLVATTVIEVGVDVPNAALMV 552 Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695 I A++ G L Q GR R V+L+A+ +++ Sbjct: 553 IEHAERMGL----AQLHQLRGRVGRGAAKSVCVLLFAEPLSE 590 >gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 544 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKRM E L + +R +V +H +++ R +++ R G DVL+ ++ GLD+ + Sbjct: 249 TKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVAARGLDVSD 308 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + IGR AR Sbjct: 309 IDLVFNYDLPQQA-----EYYVHRIGRTAR 333 >gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 521 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 G ++L+ TKR A+DLT L +H + K ER ++ + + GK +++ ++ Sbjct: 362 GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 421 Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693 GLD+ + + +++ D G + I GRA N+ AD I Sbjct: 422 ASRGLDVKD--IRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKI 471 >gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM 15981] gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM 15981] Length = 1221 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 V + H +++ E I+ D G+ DVLV ++ GLDIP + + DAD+ G Sbjct: 910 VTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVHDADRMGL---- 965 Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707 + L Q GR R+ + YA + K +L +E +R Sbjct: 966 SQLYQLRGRVGRSNRTS---YAFLMYKRDKLLKEEAEKR 1001 >gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] Length = 425 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++T+ + V MHS+++ +R +I+R+ + G+ ++L+ +++ Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680 G+DI + LV D D E + + IGR AR Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337 >gi|167037733|ref|YP_001665311.1| primosomal protein N' [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040395|ref|YP_001663380.1| primosomal protein N' [Thermoanaerobacter sp. X514] gi|300914479|ref|ZP_07131795.1| primosomal protein N' [Thermoanaerobacter sp. X561] gi|307724285|ref|YP_003904036.1| primosomal protein N' [Thermoanaerobacter sp. X513] gi|320116148|ref|YP_004186307.1| primosomal protein N' [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854635|gb|ABY93044.1| primosomal protein N' [Thermoanaerobacter sp. X514] gi|166856567|gb|ABY94975.1| primosomal protein N' [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889414|gb|EFK84560.1| primosomal protein N' [Thermoanaerobacter sp. X561] gi|307581346|gb|ADN54745.1| primosomal protein N' [Thermoanaerobacter sp. X513] gi|319929239|gb|ADV79924.1| primosomal protein N' [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 732 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644 L + T+R+ D+ ++ N RV M + K +I D R GK D+L+G ++ + Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544 Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 G DIP LV ++ AD L R+ L Q GRA R Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >gi|319791034|ref|YP_004152674.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315593497|gb|ADU34563.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 421 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+L+ V T+ A+ + E LY+ + H ++ R I+ + ++DV++ +L Sbjct: 247 RVLVFVATQHSAQIVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLAA 306 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + +V D RS T I IGR R S + + Sbjct: 307 RGIDIAQLPVVINYD-----LPRSPTDYIHRIGRTGRAGESGLAI 346 >gi|256752268|ref|ZP_05493131.1| primosomal protein N' [Thermoanaerobacter ethanolicus CCSD1] gi|256748836|gb|EEU61877.1| primosomal protein N' [Thermoanaerobacter ethanolicus CCSD1] Length = 732 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644 L + T+R+ D+ ++ N RV M + K +I D R GK D+L+G ++ + Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544 Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680 G DIP LV ++ AD L R+ L Q GRA R Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >gi|241890101|ref|ZP_04777399.1| primosomal protein N' [Gemella haemolysans ATCC 10379] gi|241863723|gb|EER68107.1| primosomal protein N' [Gemella haemolysans ATCC 10379] Length = 787 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 15/111 (13%) Query: 600 EYLYER--NIRVRYMHSEVKT----LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 EYLY+ +R+ M S+ + ER+ + D + K D+L+G ++ +GLD P L Sbjct: 552 EYLYQNIPGVRITRMDSDTTSRKGAYERL--LTDFKNHKSDILLGTQMISKGLDFPNITL 609 Query: 654 VAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVILYADTITKSI 697 V +L D L S + L+QT GRA R+ +++ I +I Sbjct: 610 VGVLSIDNMIALPSFKANEKLFQLLVQTAGRAGRSKKEGEVVFQTNIASNI 660 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 172 LLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQLYSEFKNFFPHN 220 LL GVTG+GKT K++EA+ R AI++ P IL Q+ +F+ F N Sbjct: 279 LLHGVTGAGKTEIYIKLVEAVIRVGKEAIILVPEIILTPQIEKKFRKVFSDN 330 >gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516] gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516] Length = 1168 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 65/305 (21%), Positives = 128/305 (41%), Gaps = 47/305 (15%) Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251 + +P +V+ + + A L +E+ N N E+F P + + S+ Sbjct: 49 IDKPLVVIVEDNMRARNL-TEYLNDIEDNICEFF-------------PSRELNLYNAKSL 94 Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310 ++ + R + LL I+V++ + + +S ++ +K D + +EL Sbjct: 95 DDNAENQRVNVLFKLLNNEQPIIVTTFDALTKKITKKSVAKKYTFTIKDTDLINLEELQE 154 Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370 L +Y+R D +G F + G ++IFP H R+ +F ++I+ + F T + Sbjct: 155 KLKVLKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213 Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL--------IELEKEGRLLEAQRL 422 I + + I I + S + + + I++ L R+ I+ K+ + ++L Sbjct: 214 IEDCKFIDIISCSELIIEESKKESIINSIQKNLDKRVNHPIFGENIDNVKD----KFEKL 269 Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482 + I DLE SC +LT ++ T+F+Y F+DES + I Sbjct: 270 MEYIRNDLEYEIDLVSC--------FLTKKDYD----TIFDY-------FLDESIMMIED 310 Query: 483 ISGMY 487 +S Y Sbjct: 311 LSRCY 315 >gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC 19977] gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium abscessus] Length = 1216 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 8/195 (4%) Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 K L L + F + + +A P +V+ A L +E ++ + +AV S+ Sbjct: 31 KTGLDLTAPTCARAFVVTGMADASDAPVLVVTATTREAQDLTAELRDVY-GDAVTLLPSW 89 Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288 + E P DT + ++ R+ H S + +V+++V + S E Sbjct: 90 -ETLPHERLSPGVDTVGARLQVLH----RLAHPED-SRMGVPLRVVITTVRSLLQPMSPE 143 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 + V+L +G +E +++ LV+ Y R D+ RG F V G +++F S D Sbjct: 144 LFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAGRGEFAVRGGILDVF-SPTADHPV 202 Query: 349 RVSMFGNDIEEISEF 363 RV +G+++ E+ F Sbjct: 203 RVEFWGDEVSEMRYF 217 >gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC BAA-895] gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895] Length = 1148 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 62/303 (20%), Positives = 125/303 (41%), Gaps = 49/303 (16%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFVSYYDYY 232 +TG+ +A++ E P +++AP+ A +L+ E + F N ++ YD + Sbjct: 22 LTGAACATLVAEIAERHAGPIVLIAPDMQNALRLHDEVRQFTDQLVMNLADWETLPYDSF 81 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288 P + I S Q+ M+ +L++R V S ++G V Sbjct: 82 SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +K G + + L + L Y+ D + G + G +++FP E + Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ F ++I+ + F T + + V+ I + + PT TA++ + + + Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWR-DTF 235 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 E+++ +A+ + Q++ + G+ + Y + L EP P LF Y P + Sbjct: 236 EVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---NEPLPPLFSYFPAN 279 Query: 469 SLL 471 +LL Sbjct: 280 TLL 282 >gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus] Length = 406 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE ++ R+ V MH ++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 281 TRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340 Query: 651 CGLV 654 LV Sbjct: 341 VSLV 344 >gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1150 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 A +L E K F P V +F + YD + P D ++ +S+ ++ + H Sbjct: 51 AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 +VV + ++ + + + L +G ++ + + + L Y+ D Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 G F V G I++FP + +R+ +F ++IE + F P T + I VE++++ Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435 L R L+KE R +R D + L + Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + IE Y E TLF+Y+P+D+ +F Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis SK1087] Length = 1167 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212 Q I+ K +H + QL++G++ S K T+A +E + +V+ ++ A +L S+ Sbjct: 13 QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70 Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272 + + V F++ D E + + ++N ID +++ Sbjct: 71 LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119 Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332 +V + + + + + L +G + L+ L + YK+ + +G + + Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179 Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 GD ++IF E +R+ FG++I+ I F P I N+E+I I Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225 Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 + Y+H ++ + + D G++D+LV ++ G+DIP + + +AD G Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908 Query: 669 TSLIQTIGRAARNVNSKVILYA 690 ++L Q GR R S I YA Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927 >gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 622 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L QG R+L+ V KR A+ L YL + I +H + ER E + + G VL Sbjct: 390 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 449 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLDIP +V D + + IGR R Sbjct: 450 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 488 >gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv. glycinea str. B076] gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv. glycinea str. race 4] Length = 1150 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 A +L E K F P V +F + YD + P D ++ +S+ ++ + H Sbjct: 51 AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 +VV + ++ + + + L +G ++ + + + L Y+ D Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 G F V G I++FP + +R+ +F ++IE + F P T + I VE++++ Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435 L R L+KE R +R D + L + Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + IE Y E TLF+Y+P+D+ +F Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|308069664|ref|YP_003871269.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681] gi|305858943|gb|ADM70731.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681] Length = 695 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 RV +H + E+ E++R + +LV ++ G+D+P L+ I+DAD+ G Sbjct: 516 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGL--- 572 Query: 668 KTSLIQTIGRAARNVN-SKVILYAD 691 + L Q GR R + S +L AD Sbjct: 573 -SQLHQLRGRVGRGAHASYCVLIAD 596 >gi|302389602|ref|YP_003825423.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM 16646] gi|302200230|gb|ADL07800.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM 16646] Length = 674 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 ++R+ +H ++KT E+ I++D K DVLV ++ G+D+P L+ + +A++ G Sbjct: 499 HLRIGILHGKMKTEEKDRIMKDFYDKKIDVLVATTVVEVGVDVPSATLIVVENAERFGL- 557 Query: 666 RSKTSLIQTIGRAARN 681 L Q GR R+ Sbjct: 558 ---AQLHQLRGRVGRS 570 >gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium SCB49] gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium SCB49] Length = 1115 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 51/245 (20%), Positives = 107/245 (43%), Gaps = 29/245 (11%) Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 I SR+ L G+ GS + +A + + + P +++ +K AA ++ +N + V Sbjct: 24 AIESRDNYTLS-GLVGSAVSLVIADIFKTSETPVLLILNDKEEAAYHLNDLENLLGEDNV 82 Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSS 277 ++ P +Y R IE+ + N E ++R+ SL IV Sbjct: 83 LFY--------PGSY--RRPYQIEETDNANILLRSEVLNRINSRRKPSL------IVTYP 126 Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337 + + + + + +++ +G++V + L + ++KR D G F V G ++ Sbjct: 127 EALFEKVVTKKELDKNTLKISVGENVTIDFVNEVLFEYKFKRTDFVTEPGEFSVRGGILD 186 Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394 ++ S D +R+ FG+D++ I F L+ ++++ + I N H R + Sbjct: 187 VY-SFSNDEPYRIEFFGDDVDSIRTFDVETQLSLEQLKKISIIPNVENKHLDENRESF-- 243 Query: 395 AMKYI 399 +KY+ Sbjct: 244 -LKYV 247 >gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia] Length = 813 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 LL K++ EY L ++ RY+H ++K ER +I+ + + G + L+ NL Sbjct: 679 LLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAINCLITTNLASR 738 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ + +V D F + I IGR R Sbjct: 739 GLDVSDVDVVINYD-----FPDTIEDYIHRIGRTGR 769 >gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum] Length = 631 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +L+ K+ +D+ EYL + + +H + ER I+ + GK DVLV ++ + Sbjct: 440 VLIFCENKKDVDDIHEYLLLKQVEAVAVHGDKSQEERDTAIKAFKDGKKDVLVATDVASK 499 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686 GLD P+ V D KE + I IGR R + V Sbjct: 500 GLDFPDIQHVINFDMPKE-----IENYIHRIGRTGRCGKTGV 536 >gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f. nagariensis] gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f. nagariensis] Length = 574 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 4/147 (2%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ V T+R +++ +L E R +H +R I+ R G ++ L+ ++ Sbjct: 420 RVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQDQREAGIKGFRDGTYNCLIATDVAG 479 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA-RNVNSKVILYADT-ITKSIQLAI 701 G+D+P+ LV ++ D + + T I GRA + V + DT + ++ + Sbjct: 480 RGIDVPDVALV--INYDMPNNIENYTHRIGRTGRAGKKGVAVTFLTLGDTGVFYDLKKLL 537 Query: 702 DETTRRREKQLEHNKKHNINPQSVKEK 728 +E+ +L ++ + P S++ K Sbjct: 538 EESKAAVPPELARHEASKLKPGSIEAK 564 >gi|302542239|ref|ZP_07294581.1| ATP-dependent DNA helicase RecG [Streptomyces hygroscopicus ATCC 53653] gi|302459857|gb|EFL22950.1| ATP-dependent DNA helicase RecG [Streptomyces himastatinicus ATCC 53653] Length = 737 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 R++RV +H + + E++R G DVLV ++ G+++P + I+DAD+ G Sbjct: 552 RDLRVEVLHGRMAPEAKDEVMRRFAAGGVDVLVATTVIEVGVNVPNATAMVIMDADRFGV 611 Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688 + L Q GR R + L Sbjct: 612 ----SQLHQLRGRVGRGSAPGLCL 631 >gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147] gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147] Length = 1156 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 IV P+ A +L + ++ F P + F+ ++ E + P D E+ S + + + Sbjct: 38 IVFTPDAETALRLQTAWQFFRPEDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQLKN 96 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 + D + V + + + LK G ++ L +LV+ Sbjct: 97 GL-----------ADALFVPVATAMQRLAPAPFLLGRTFWLKTGQRLDIAALRQNLVEAG 145 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP+ D +R+ +F ++I+ I F P + + I V Sbjct: 146 YSAVSNVVAGGEFAVRGGIVDLFPTG-SDTPYRIDLFDDEIDSIKTFDPDSQRTIAPVSE 204 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 205 IRLLPAHEF----PTDDAAQKIFRSRFR 228 >gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group] Length = 1318 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 383 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 436 Query: 683 NSKVIL 688 NS +L Sbjct: 437 NSDYLL 442 >gi|238588435|ref|XP_002391725.1| hypothetical protein MPER_08804 [Moniliophthora perniciosa FA553] gi|215456784|gb|EEB92655.1| hypothetical protein MPER_08804 [Moniliophthora perniciosa FA553] Length = 674 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+I+ + G+F+VLV ++ EGLDI E L+ DA K + ++Q +GR Sbjct: 46 EQLEVIKKFKAGEFNVLVATSIGEEGLDIGEVDLIICYDAQK-----TPIRMLQRLGRTG 100 Query: 680 R 680 R Sbjct: 101 R 101 >gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius okutanii HA] gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius okutanii HA] Length = 1145 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 10/115 (8%) Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 MAE+L + + + IR+ H ++ T E +I+ D +F +LV ++ G+DIP Sbjct: 827 MAENLKQIIPKLQIRI--AHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANT 884 Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 + I +A G L Q GR R+ + YA I KS L++ +T + R Sbjct: 885 IIINNAQNFGL----AQLHQLRGRVGRSHHRA---YAYLIVKS-HLSLSKTAKDR 931 >gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing) [Oryza sativa Japonica Group] Length = 1017 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 55 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 108 Query: 683 NSKVIL 688 NS +L Sbjct: 109 NSDYLL 114 >gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group] gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName: Full=Dicer-like protein 2a; Short=OsDCL2a gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza sativa Japonica Group] gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group] gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1410 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501 Query: 683 NSKVIL 688 NS +L Sbjct: 502 NSDYLL 507 >gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1 [Canis familiaris] Length = 696 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 +LL V K AE+L L + + +H ++ ER ++I D + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 GLDIP V D ++ + + T I GRA K + Y K A D Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612 >gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 535 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 ++L+ V TKR A++L L ++ RV MH + ER + D + G + L+ ++ Sbjct: 400 KVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKSGAVNYLIATDVAS 459 Query: 644 EGLDIPECGLVAI--LDADKEGFLRSKTSLIQTIGRAARNVNSKVI---LYADT 692 GLDI +V + +D E ++ I GR R+V + I YAD Sbjct: 460 RGLDIRNIEIVINYEMPSDIENYIHR----IGRTGRMGRSVEGEAISLFTYADA 509 >gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864] Length = 413 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R E L E + + N V +MH E+ ER I++ R G VL+ +L G+D+ + Sbjct: 285 TRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRVLITTDLWARGIDVQQ 344 Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 LV D ++E + I IGR+ R S V + Sbjct: 345 VSLVINYDLPINRENY-------IHRIGRSGRFGRSGVAI 377 >gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster bacterium] Length = 614 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 11/149 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK + +L+E L R ++ +++ +R +II + G D+LV ++ GLD+P Sbjct: 261 TKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVAARGLDVPR 320 Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708 V D D E ++ I GRA R + IL+ + + I+ TR++ Sbjct: 321 ISHVVNYDIPQDAETYVHR----IGRTGRAGR--EGEAILFVSHRERRMLNNIERVTRQK 374 Query: 709 EKQLEHNKKHNINPQSV---KEKIMEVID 734 + LE IN + + K++I E I+ Sbjct: 375 IEPLELPTAKIINEKRIDTFKKRITETIN 403 >gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata] Length = 1921 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%) Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674 EV+ ++ E++R R + ++L+ +++ EG+DIP+C LV D E S +Q+ Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549 Query: 675 IGRAARNVNSKVILYADT 692 GR AR S I+ ADT Sbjct: 550 KGR-ARAPISNYIMLADT 566 >gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255] Length = 416 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 D+YD + + + ++ T+R + L + + E N V MH E+ ER I++D R Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFR 311 Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G VL+ ++ G+D+ + LV D ++ + I IGR+ R Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPT-----NRENYIHRIGRSGR 357 >gi|260830085|ref|XP_002609992.1| hypothetical protein BRAFLDRAFT_287272 [Branchiostoma floridae] gi|229295354|gb|EEN66002.1| hypothetical protein BRAFLDRAFT_287272 [Branchiostoma floridae] Length = 672 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 7/97 (7%) Query: 586 LLTVLTKRMAEDL-TEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 +L + RM DL + ++++ N+R MH + ER + L G+ DV+V +L Sbjct: 475 VLVFVDSRMGADLLADAIHKKCNVRALSMHGDKPQSERSAALNSLLKGEVDVVVATGVLG 534 Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLD+ LV + D S I IGRA R Sbjct: 535 RGLDLCRVRLVIVFDMPP-----SVNEYIHQIGRAGR 566 >gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali] gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali] Length = 531 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TK+ +++ YL E N V ++H ++K +R +++ + R K +L+ ++ G+DI Sbjct: 251 TKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKILIATDVAARGIDISS 310 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 +V D R + IGR R Sbjct: 311 ITMVINYDLS-----RQNEIYVHRIGRTGR 335 >gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5] gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5] gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 614 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 L QG R+L+ V KR A+ L YL + I +H + ER E + + G VL Sbjct: 382 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 441 Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 V ++ GLDIP +V D + + IGR R Sbjct: 442 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 480 >gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638] gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638] Length = 1148 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 60/303 (19%), Positives = 126/303 (41%), Gaps = 49/303 (16%) Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFVSYYDYY 232 +TG+ +A++ E P +++AP+ A +L+ E + F N ++ YD + Sbjct: 22 LTGAACATLVAEIAERHAGPVVLVAPDMQNALRLHDEIRQFTDSLVFNLADWETLPYDSF 81 Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288 P + I S Q+ M+ +L++R V S ++G V Sbjct: 82 SPHQEI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129 Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348 +K G+ + + L S L Y+ D + G + G ++++P D + Sbjct: 130 --------MKKGERLSRDALRSQLDSAGYRHVDQVMEHGEYATRGALLDLYPMG-SDQPY 180 Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408 R+ F ++I+ + F T + + V+ I + + PT TA++ + + + + Sbjct: 181 RLDFFDDEIDSLRVFDADTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWRDKF- 235 Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468 ++++ +A+ + Q++ + G+ + Y + L EP P LF Y P Sbjct: 236 DVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPALFSYFPAK 279 Query: 469 SLL 471 +L+ Sbjct: 280 TLI 282 >gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans PV-1] gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans PV-1] Length = 1109 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343 I E + + Q+K GD ++ L S L + D + +G F G +++P+ Sbjct: 110 IAPPEVVAAHVWQIKPGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-T 168 Query: 344 EDVAWRVSMFGNDIEEISEFYP 365 E+ R+ MFG+DIE I F P Sbjct: 169 EETPLRIDMFGDDIESIRRFDP 190 >gi|46446859|ref|YP_008224.1| primosome assembly protein PriA [Candidatus Protochlamydia amoebophila UWE25] gi|46400500|emb|CAF23949.1| putative primosomal protein N' [Candidatus Protochlamydia amoebophila UWE25] Length = 745 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF----LRSKTSLIQTI--- 675 +++RD GK DVL+G ++ +GL PE LV +L++D G R+ ++ Q I Sbjct: 539 KLLRDFGTGKADVLIGTQMIAKGLHFPEVTLVGVLNSDA-GLNIPDFRASETIFQLITQV 597 Query: 676 -GRAARNVN 683 GR+ R V Sbjct: 598 AGRSGRGVT 606 >gi|332662377|ref|YP_004445165.1| primosomal protein N' [Haliscomenobacter hydrossis DSM 1100] gi|332331191|gb|AEE48292.1| primosomal protein N' [Haliscomenobacter hydrossis DSM 1100] Length = 823 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675 +II D G+ +VLVG ++ +GLD + GLV +L AD+ R+ ++Q Sbjct: 616 KIINDFEEGRINVLVGTQMVTKGLDFEKVGLVGVLSADQLLQFPDFRAGERAFQLMLQVA 675 Query: 676 GRAAR-NVNSKVILYADTITKSI 697 GRA R + KVI+ + + + Sbjct: 676 GRAGRKHKRGKVIIQSHNVANPV 698 >gi|332229234|ref|XP_003263796.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Nomascus leucogenys] Length = 2024 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 498 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 552 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 553 RKRQGRIVV 561 >gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1112] gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus 30SC] gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1112] gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus 30SC] gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1118] Length = 497 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ R+ +++ R GK D+LV ++ GLDI Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333 >gi|296214902|ref|XP_002753903.1| PREDICTED: fanconi anemia group M protein [Callithrix jacchus] Length = 2043 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 522 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 576 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 577 RKRQGRIVV 585 >gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4] Length = 534 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 TKR A+ +++ L ER V +H ++ + R + ++ R GK DVLV ++ G+DI Sbjct: 300 TKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKIDVLVATDVAARGIDI 357 >gi|209972934|ref|YP_002300381.1| gp19.5 [Bacillus phage SPO1] gi|209871254|gb|ACI91010.1| gp19.5 [Bacillus phage SPO1] Length = 530 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%) Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606 Q R G+++ R QV D++ A+ G + L+ V E + L + Sbjct: 367 QTARDQGIIN-----NQERNQV--FVDKVLERAKSGKQCLIIVNETTHGEIILSMLQNQG 419 Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666 + V + H E+ R ++ L G DVLV +L EG+D+ + ++ K Sbjct: 420 VTVDFTHGEMTKTHRQSVLDRLDEGSLDVLVATPILDEGVDVSGINCLFLMAGGK----- 474 Query: 667 SKTSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDETTRR 707 S ++Q IGR R S + +Y D + + +D T RR Sbjct: 475 SMRQILQRIGRGLRKKEDGSGLEVY-DALDYHNEFLVDHTARR 516 >gi|114652855|ref|XP_509928.2| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan troglodytes] Length = 2048 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVV 587 >gi|33521040|gb|AAQ21341.1| Csw015 [uncultured bacterium] Length = 1499 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615 P+ + + Q E VY + L+ V T+RMAE +L ER R V H Sbjct: 295 PLSVVMSNDQWEQVYGRVAELVLSHRTTLVFVNTRRMAERAARHLAERLGREAVAAHHGS 354 Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 + R+ + L+ G VLV L GLDI + LV L G RS + +Q + Sbjct: 355 LSKEARLLAEQRLKRGDLKVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRV 409 Query: 676 GRAARNVNS 684 GR+ V Sbjct: 410 GRSGHQVGG 418 >gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis RP62A] gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis M23864:W2(grey)] gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus epidermidis RP62A] gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis M23864:W2(grey)] gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU144] gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU045] Length = 509 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L + + +H ++ +R+E+++ + + D+LV ++ GLDI Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D S T I GRA + + + + I I++ RR K Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364 Query: 711 QL 712 L Sbjct: 365 AL 366 >gi|332842130|ref|XP_003314350.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan troglodytes] Length = 2022 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 498 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 552 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 553 RKRQGRIVV 561 >gi|296421505|ref|XP_002840305.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636520|emb|CAZ84496.1| unnamed protein product [Tuber melanosporum] Length = 472 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE L R+ V MH ++ +R I+++ R G VL+ +LL G+D+ + Sbjct: 347 TRRKVDWLTEKLTARDFTVSAMHGDMDQHQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 406 Query: 651 CGLVAILD--ADKEGFL 665 LV D A++E ++ Sbjct: 407 VSLVINYDLPANRENYI 423 >gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096] gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096] Length = 416 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR +++T L R R +H ++ +R+ +IRD + + D+LV ++ GLDI Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332 >gi|21752288|dbj|BAC04159.1| unnamed protein product [Homo sapiens] Length = 669 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVI 587 >gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421] gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421] Length = 384 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%) Query: 575 INLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633 + L ++G+R +++ TK A L+EYL + I +H +R E + + GK+ Sbjct: 232 LELLEREGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKY 291 Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 VLV ++ G+DI G V D + + I +GR AR Sbjct: 292 RVLVATDIASRGIDIEALGHVVNFDVPQ-----AAEDYIHRVGRTAR 333 >gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2] gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2] Length = 516 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LTE L R +H ++ +R+ +R + G +VLV ++ GLDI Sbjct: 230 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDI-- 287 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708 G+ + + D + S + IGR R + + + + K + AI++TT+R+ Sbjct: 288 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRK 343 >gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces pristinaespiralis ATCC 25486] gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces pristinaespiralis ATCC 25486] Length = 1070 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 12/108 (11%) Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340 + G+G +E V L+ G + +++ L Y R ++ RG F V G +++FP Sbjct: 33 VKGLGDLEP-----VSLRTGQQADLNDVVEGLAAAAYSRVELVEKRGEFAVRGGILDVFP 87 Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388 E+ RV +G+D+EEI F K+ + +++I + + P Sbjct: 88 P-TEEHPLRVEFWGDDVEEIRYF------KVADQRSLEIAEHGLWAPP 128 >gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f] gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f] Length = 422 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%) Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 R+++ +K +++ + L + V MHS+++ +R ++ + + G+ ++LV +++ Sbjct: 246 RVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVA 305 Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688 G+DI + LV D D E + + IGR AR N V L Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345 >gi|257453021|ref|ZP_05618320.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R] gi|317059561|ref|ZP_07924046.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R] gi|313685237|gb|EFS22072.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R] Length = 679 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 4/79 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N ++ +H +K +E+ EI++ + + D+LV ++ G+D+P ++ IL+A++ G Sbjct: 501 NYKIALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGL- 559 Query: 666 RSKTSLIQTIGRAARNVNS 684 ++L Q GR R ++ Sbjct: 560 ---SALHQLRGRVGRGKDA 575 >gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis alpha14] gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis alpha14] Length = 1375 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 17/208 (8%) Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256 +V+ + A +L + + F PH+ F+ ++ E + P D E+ S++ + Sbjct: 37 VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92 Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316 ++ A D + V + + + V + LK G +++ L S LV Sbjct: 93 -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144 Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 Y + G F V G +++FP E + +R+ +F ++I+ I F T + I V Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203 Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404 I++ + PT + A K + + Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 R+ H +++ E +++RD +F+VL+ ++ G+DIP + I ADK G Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122 Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702 L Q GR R+ + +L + ITK + +D Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158 >gi|227829772|ref|YP_002831551.1| type III restriction protein res subunit [Sulfolobus islandicus L.S.2.15] gi|227456219|gb|ACP34906.1| type III restriction protein res subunit [Sulfolobus islandicus L.S.2.15] Length = 666 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%) Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 T Y +ER I +V+ + + ER++++++LR G+ DVL+ + EG+DIPE L+ Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365 Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681 + D +S Q +GR R Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387 >gi|238854784|ref|ZP_04645114.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3] gi|260664015|ref|ZP_05864868.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US] gi|282933862|ref|ZP_06339210.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1] gi|313472296|ref|ZP_07812788.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153] gi|238832574|gb|EEQ24881.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3] gi|239529856|gb|EEQ68857.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153] gi|260561901|gb|EEX27870.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US] gi|281301951|gb|EFA94205.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1] Length = 674 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%) Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 Y + +V +H ++ ++ +I+ D G D+LV +++ G+D+P ++ I DAD+ Sbjct: 494 YFNHEKVVLLHGQMSGEDKDQIMTDFSEGNIDILVATSVIEVGVDVPNANMMVIFDADRF 553 Query: 663 GFLRSKTSLIQTIGRAARN 681 G + L Q GR R Sbjct: 554 GL----SQLHQLRGRIGRG 568 Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 ++ S +T V +Y I Q L + +L + + E L +R+ + S K Sbjct: 282 DVGSGKTVVAVFAIYAAITAGYQAALMVPTEILANQHFGKIAELLRPFGVRIALLTSSTK 341 Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656 +E+ EI R+L G +V++G + L++ L GLV I Sbjct: 342 AMEKREIYRELADGTLNVVIGTHALIQPSLKFKNLGLVII 381 >gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group] Length = 1371 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501 Query: 683 NSKVIL 688 NS +L Sbjct: 502 NSDYLL 507 >gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVIL----YADTITKSIQL 699 VIL Y S+QL Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571 >gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026] Length = 479 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 243 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 300 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 301 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 327 >gi|240080014|ref|ZP_04724557.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19] gi|268596156|ref|ZP_06130323.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19] gi|268549944|gb|EEZ44963.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19] Length = 680 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657 L L E NI + +H +K E+ E++ + G+ +VLV ++ G+D+P L+ I Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555 Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693 A++ G L Q GR R V+L+A+ + Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589 >gi|294888665|ref|XP_002772561.1| ATP-dependent RNA helicase rok1, putative [Perkinsus marinus ATCC 50983] gi|239876829|gb|EER04377.1| ATP-dependent RNA helicase rok1, putative [Perkinsus marinus ATCC 50983] Length = 239 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 L V +K A++LT+ L + V +HS++ +R I + RLGK +L+ +++ G Sbjct: 54 LAFVQSKARAQELTKELMFDGVFVACIHSDMSRKQRDTCIENFRLGKIWILICTDVMARG 113 Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683 +D G+ +++ D R+ + I +GR R N Sbjct: 114 VDFK--GVAQVINID---IPRASATYIHRVGRTGRAGN 146 >gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228] gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228] Length = 509 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L + + +H ++ +R+E+++ + + D+LV ++ GLDI Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D S T I GRA + + + + I I++ RR K Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364 Query: 711 QL 712 L Sbjct: 365 AL 366 >gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis FRI909] Length = 509 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L + + +H ++ +R+E+++ + + D+LV ++ GLDI Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710 G+ + + D S T I GRA + + + + I I++ RR K Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364 Query: 711 QL 712 L Sbjct: 365 AL 366 >gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] Length = 411 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE + ++ V MH +++ ER I+R+ R G VL+ +LL G+D+ + Sbjct: 286 TRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQ 345 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IGR+ R Sbjct: 346 VSLVINYDLPT-----NRENYIHRIGRSGR 370 >gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida LFI1238] gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida LFI1238] Length = 442 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 21/142 (14%) Query: 554 LVDPPVEIR----SARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAEDL 598 L++ P+EI+ A T V+ V+ +N + L + L+ V K E L Sbjct: 226 LLNDPIEIQVQSADASTLVQRVF-TVNKGEKTALLAHLIKQNEWRQALIFVNAKNSCEHL 284 Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658 + L +R I H + R I+ +LG+ +VL+ N+ GLDI + +V D Sbjct: 285 ADKLSKRGITAEVFHGDKGQGARTRILEAFKLGEIEVLIATNIAARGLDIEKLPVVINFD 344 Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680 RS + + IGR+ R Sbjct: 345 -----LPRSPSDYMHRIGRSGR 361 >gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group] Length = 685 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R+AR QV + D I ++ G I+ T TK A DL+ + R +H +V +R Sbjct: 341 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASDLSGLIAGS----RALHGDVAQAQR 393 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 I+ R GKF VLV N+ GLDI + L+ + R + I GR R Sbjct: 394 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 448 Query: 682 VNSKV 686 N+ V Sbjct: 449 GNTGV 453 >gi|23273574|gb|AAH36056.1| FANCM protein [Homo sapiens] gi|119586188|gb|EAW65784.1| Fanconi anemia, complementation group M, isoform CRA_d [Homo sapiens] gi|325463111|gb|ADZ15326.1| Fanconi anemia, complementation group M [synthetic construct] Length = 669 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVI 587 >gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv. syringae B728a] gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv. syringae B728a] Length = 1150 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 A +L E K F P V +F + YD + P D ++ +S+ ++ + H Sbjct: 51 AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 +VV + ++ + + + L +G ++ + + + L Y+ D Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 G F V G I++FP + +R+ +F ++IE + F P T + I VE++++ Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435 L R L+KE R +R D + L + Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + IE Y E TLF+Y+P+D+ +F Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|50293589|ref|XP_449206.1| hypothetical protein [Candida glabrata CBS 138] gi|74608568|sp|Q6FKN8|DBP5_CANGA RecName: Full=ATP-dependent RNA helicase DBP5 gi|49528519|emb|CAG62178.1| unnamed protein product [Candida glabrata] Length = 504 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-EGFLR 666 +V +HS+++T ER +I D R G+ VL+ N+L G+DIP +V D + Sbjct: 378 QVSILHSDLRTDERDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGMP 437 Query: 667 SKTSLIQTIGRAAR 680 + + IGR R Sbjct: 438 DYATYVHRIGRTGR 451 >gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14] Length = 465 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 T+R + LTE + ++ V MH ++ +R I+R+ R G VL+ +LL G+D+ + Sbjct: 340 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 399 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 LV D ++ + I IGR+ R Sbjct: 400 VSLVVNYD-----LPLNRENYIHRIGRSGR 424 >gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica] Length = 664 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 15/130 (11%) Query: 565 RTQVEDVYDE------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 R +E V DE + + + +L+ KR + + EYL + + +H Sbjct: 438 RQDIEYVLDEAKVVTVLQMLQKTSPPVLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQ 497 Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIG 676 +R+E R R G+ DVLV ++ +GLD PE V D D E + I IG Sbjct: 498 EDRMEACRQFRGGEKDVLVATDIASKGLDFPEIEHVINYDMPEDIENY-------IHRIG 550 Query: 677 RAARNVNSKV 686 R R + V Sbjct: 551 RTGRGNHQGV 560 >gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus gasseri 224-1] gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus gasseri 224-1] Length = 452 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ +R+ +++ R GK D+LV ++ GLDI Sbjct: 215 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 272 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 273 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 299 >gi|257467419|ref|ZP_05631730.1| ATP-dependent DNA helicase recG [Fusobacterium gonidiaformans ATCC 25563] gi|315918543|ref|ZP_07914783.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|313692418|gb|EFS29253.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC 25563] Length = 679 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 4/79 (5%) Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 N ++ +H +K +E+ EI++ + + D+LV ++ G+D+P ++ IL+A++ G Sbjct: 501 NYKIALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGL- 559 Query: 666 RSKTSLIQTIGRAARNVNS 684 ++L Q GR R ++ Sbjct: 560 ---SALHQLRGRVGRGKDA 575 >gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus JV-V01] gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus MV-1A-US] gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1] gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus JV-V01] gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus MV-1A-US] gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1] Length = 495 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++LT L R +H ++ R+ +++ R GK D+LV ++ GLDI Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDI-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ + + D + S + IGR R Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333 >gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group] Length = 676 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 +G + ++ TKR A+ L+ Y R+ + + +H ++ +R ++ R G F++L+ + Sbjct: 389 KGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 447 Query: 641 LLREGLDIPECGLV 654 + GLDIP LV Sbjct: 448 VAARGLDIPNVDLV 461 >gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] Length = 1760 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%) Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L R +R R +E+ + EI+R R+ + ++L+G +++ EG+D+P+C LV D K Sbjct: 444 LSSRGMRSR--ETEMAFRRQEEILRRFRMHENNLLIGTSVVEEGVDVPKCNLVVRFDLPK 501 Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVIL 688 + S +Q+ GRA + V+L Sbjct: 502 D-----YRSYVQSKGRARAQGSHYVML 523 >gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium HTCC5015] gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium HTCC5015] Length = 1162 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 34/238 (14%) Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294 + + P D E+ S++ Q+ R++ R LL ++ + S + IG V+ Q Sbjct: 90 DVFSPHQDIISERLSTLY-QLPRLQ----RGLL------IIPATSLLQRIGPVDYIEQQA 138 Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354 +GD+V+ +L L + Y+ + G F V G +++FP + +R+ +F Sbjct: 139 FVASVGDTVDLNQLRQRLEQAGYQCVSQVMEHGEFAVRGALLDLFPMG-QAQPFRIDLFD 197 Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414 ++IE I F P T + + I + + P +A+ + + R E + + Sbjct: 198 DEIETIRTFDPETQRSTGQHQHINLLPAREF----PFNPSAIDDFRSAWRERF-EGDPQN 252 Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 L+ E ++ IE Y R TLF+Y+PE++LLF Sbjct: 253 ALIYRNISEGQLP------------SGIEYYLPLFFERT-----ATLFDYLPENALLF 293 >gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 408 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 I++ V TKR A+ L + L++ + +H +++ +R +I R G+ ++V ++ Sbjct: 243 IIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASR 302 Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 GLDIP V D + S+ + IGR AR Sbjct: 303 GLDIPHIQHVINYDVPQ-----SQADYVHRIGRTAR 333 >gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3] gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3] Length = 649 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637 A +GL ++ V T+R A+ + E L +R +H ++ +R + +R R GK DVLV Sbjct: 326 AGGRGLAMVF-VRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLV 384 Query: 638 GINLLREGLDI 648 ++ G+DI Sbjct: 385 ATDVAARGIDI 395 >gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVIL----YADTITKSIQL 699 VIL Y S+QL Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571 >gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVIL----YADTITKSIQL 699 VIL Y S+QL Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571 >gi|50399920|gb|AAT76308.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza sativa Japonica Group] Length = 585 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 EI+ R GK +++ +L EGLD+P C LV D + S IQ+ GR AR Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501 Query: 683 NSKVIL 688 NS +L Sbjct: 502 NSDYLL 507 >gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus leucogenys] Length = 2050 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++E+++ R G ++ LV + EGLDI E L+ D+ K S L+Q +GR Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 579 RKRQGRIVV 587 >gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 536 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 TKR ++L E L +R +H ++ +R ++R R G DVLV ++ GLD+ Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARGLDV-- 306 Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 G+ +++ D + S + IGR R Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333 >gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM 5159] gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM 5159] Length = 1165 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 21/225 (9%) Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 + + +A + + RP +V+ P + A +L VE +Q + Sbjct: 45 AARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEV-------WQAPETL 97 Query: 239 PRTDTYIEKESSINEQ---IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295 P D + + +S E+ + RM + + + + + ES + Sbjct: 98 P-YDVFAQDRASAVERSWFLQRMTEPSP-------GLFIAPARGLLQLLPPNESLRGCPL 149 Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355 L++G + + +L LV Y + G+F G ++++P D+A R+ FG+ Sbjct: 150 TLRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPPG-NDLAVRIEFFGD 208 Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 +I+ I F P T + + + +I + S P P L A ++ Sbjct: 209 EIDSIRRFEPTTQRSVDRLHSIMLLPLSE--APLPQLQAAATKLR 251 >gi|209524916|ref|ZP_03273461.1| type III restriction protein res subunit [Arthrospira maxima CS-328] gi|209494565|gb|EDZ94875.1| type III restriction protein res subunit [Arthrospira maxima CS-328] Length = 493 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%) Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625 EI L LRIL ++++ E + T Y ++ + + + ER +I+ Sbjct: 315 EIALCTDGKLRILADIISQNHPERTLIFTVDNTTVYRISQDFLIPAITHQTPVKERHQIL 374 Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682 R G++ LV ++L EG+D+P+ + IL S+ IQ +GR R Sbjct: 375 DKFRQGEYRTLVASHVLNEGVDVPDAKIAIILSGTG-----SEREYIQRLGRVLRKGSQT 429 Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQ 711 + +LY + IT++ RR KQ Sbjct: 430 GKRAVLY-EVITENTSEEQTSQRRRGHKQ 457 >gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae] gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae] Length = 2252 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 551 EVLKRFRMHDCNVLIGTSILEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 605 Query: 683 NSKVILYADTI----TKSIQLAIDETTR 706 VIL A + S++L DE+ R Sbjct: 606 AYHVILVAPSFETPPVDSVELT-DESHR 632 >gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group] Length = 685 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621 R+AR QV + D I ++ G I+ T TK A DL+ + R +H +V +R Sbjct: 341 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASDLSGLIAGS----RALHGDVAQAQR 393 Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 I+ R GKF VLV N+ GLDI + L+ + R + I GR R Sbjct: 394 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 448 Query: 682 VNSKV 686 N+ V Sbjct: 449 GNTGV 453 >gi|115470561|ref|NP_001058879.1| Os07g0143700 [Oryza sativa Japonica Group] gi|113610415|dbj|BAF20793.1| Os07g0143700 [Oryza sativa Japonica Group] Length = 292 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 G + ++ TKR A+ L Y R+ + +H ++ +R + R G+F++LV + Sbjct: 17 NGGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATD 75 Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698 + GLDIP LV + L + GR AR S +++Y + ++++ Sbjct: 76 VAARGLDIPNVDLVIHYELPNTSEL-----FVHRSGRTARAGKKGSAILIYTNDQARAVR 130 Query: 699 L 699 + Sbjct: 131 I 131 >gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVIL----YADTITKSIQL 699 VIL Y S+QL Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571 >gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682 E+++ R+ +VL+G ++L EG+D+P+C LV D + S +Q GRA Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550 Query: 683 NSKVIL----YADTITKSIQL 699 VIL Y S+QL Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571 >gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1150 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%) Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261 A +L E K F P V +F + YD + P D ++ +S+ ++ + H Sbjct: 51 AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104 Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321 +VV + ++ + + + L +G ++ + + + L Y+ D Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154 Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381 G F V G I++FP + +R+ +F ++IE + F P T + I VE++++ Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211 Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435 L R L+KE R +R D + L + Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250 Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 + IE Y E TLF+Y+P+D+ +F Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 ++ A DL E + E R+ H +++ E +++ D +F+VL+ ++ G+D+P Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883 Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681 + I ADK G L Q GR R+ Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909 >gi|293367165|ref|ZP_06613836.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|291318726|gb|EFE59101.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] Length = 949 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 ++ +VE + + N G L+ L+ V ++ A L L +R I + + Sbjct: 427 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 486 Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 R E I+ L+ G + ++ ++L EG+DIPE V +L K + IQ +GR R Sbjct: 487 RTETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 541 Query: 681 NVNSK 685 +K Sbjct: 542 KSTNK 546 >gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera] Length = 764 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 P S RT + D+ I + A+ G I+ T TKR A++++ L +I +H ++ Sbjct: 345 PTTATSKRTILSDL---ITVYAKGGKTIVFT-QTKRDADEVSMALTN-SIASEALHGDIS 399 Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654 +R + R GKF VLV ++ GLDIP L+ Sbjct: 400 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 436 >gi|260836711|ref|XP_002613349.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae] gi|229298734|gb|EEN69358.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae] Length = 2342 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 E++ +++ R G ++VLV + EGLDI + L+ DA K S L+Q +GR Sbjct: 514 EQLAVMKKFREGGYNVLVSTCVGEEGLDIGDVDLIVCFDAHK-----SPIRLVQRMGRTG 568 Query: 680 RNVNSKVIL 688 R ++++ Sbjct: 569 RKRQGRIVM 577 >gi|167626709|ref|YP_001677209.1| ATP-dependent DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596710|gb|ABZ86708.1| ATP-dependent DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 679 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 K + ++L E L + N+ + Y +K+ ++I+ + D + K+ VLV ++ G+D+P