BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B
[Candidatus Liberibacter asiaticus str. psy62]
(805 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 1670 bits (4324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 805/805 (100%), Positives = 805/805 (100%)
Query: 1 MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60
MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA
Sbjct: 1 MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60
Query: 61 AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG
Sbjct: 61 AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG
Sbjct: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR
Sbjct: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG
Sbjct: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI
Sbjct: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ
Sbjct: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI
Sbjct: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC
Sbjct: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE
Sbjct: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI
Sbjct: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF
Sbjct: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
EEAARIRDEIKRLKSSPYFQGLDDS
Sbjct: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 39.7 bits (91), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT----MAKVIEAMQRPAIVMAP 201
+ P+ Q +AI +L+ + + + +++L G GSGKT MA +EA + A++MAP
Sbjct: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-AVIMAP 329
Query: 202 NKILAAQLYSEFKNF 216
ILA Q Y K +
Sbjct: 330 IGILAQQHYEFIKKY 344
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 38.1 bits (87), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
K+ +L L ++ V +H + R++I+ + + G ++V +L GLDIP+
Sbjct: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN------VNSKVILYADTITKSIQLAID 702
G V D + I GRA R+ V + I + D I K I+ +D
Sbjct: 315 GHVFNFDVPNRA--ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 35.8 bits (81), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPH---RSWSINNHSKDI 138
S++S +EK +I + P + +ARL D +K+GKIW R+ +++H D
Sbjct: 112 SALSETEKMEEKIQFTGIFPRINTVARLRVLDK--IKDGKIWEKRDLIRASQVSSHVIDG 169
Query: 139 -----TFFQMQTDYHPSGDQPA--------------AIAQLLKGIHSREKVQLLLGVTGS 179
Q+ P D P + Q++ V L+ GVTGS
Sbjct: 170 LKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGS 229
Query: 180 GKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
GKT +++ A + + +++ P L + + F+ F E+ S
Sbjct: 230 GKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSS 280
Score = 32.7 bits (73), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE-RIEI-IRDLRLGKFD 634
+ G I +R+AE++ EY R+ + S+++ R+++ + + G+ D
Sbjct: 481 VCGSSGKMIACGFGIERIAEEVCEYF--PLARISILSSDLEGGGGRLQLQLSAIAKGEID 538
Query: 635 VLVGINLLREGLDIPECGLVAILDAD---KEGFLRSKTS----LIQTIGRAAR 680
+++G L+ +G + P LV ++D D LRS L Q GRA R
Sbjct: 539 IIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGR 591
Score = 24.6 bits (52), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--EDVYDEINLAAQQ-GLRILLTVLTKR 593
L++ Q +VEQ++ P V + S T +VY EI A G ++L+ +
Sbjct: 199 LDKNQQDVVEQVV-PLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEIS 257
Query: 594 MAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--E 650
+ + E +R ++ HS + T R +I R + G V+VG+ R L +P +
Sbjct: 258 LTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV---RSALFLPFKK 314
Query: 651 CGLVAI 656
GL+ I
Sbjct: 315 LGLIVI 320
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 32.0 bits (71), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
G++DVL+ +++ GLD+P+ + + AD G L Q GR R+ + L+
Sbjct: 885 GQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL----AQLYQLRGRVGRSKIASFALF 939
Score = 25.4 bits (54), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
K+++ + AI P +++ LYS+F FPH E
Sbjct: 592 KLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETE 628
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 28.9 bits (63), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
T+ T+ L E +V + E+ ER ++ +R G+ V + ++ G+D+P+
Sbjct: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
Query: 651 CGLV--AILDADKEGFL-RSKTSLIQTIGRAAR 680
LV A L ++ E L RS + GRA R
Sbjct: 313 LELVIHAELSSNPENLLHRSGRT-----GRAGR 340
>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 461
Score = 25.8 bits (55), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 170 VQLLLGVTGSGKTFTMAKV 188
V +L+G+ GSGKT T AK+
Sbjct: 102 VIMLVGLQGSGKTTTTAKI 120
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 25.4 bits (54), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 151 GDQPAAIAQLLKGIHSREKVQLLLG----VTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
GD I +++K I S L + + G+G ++ + +PA+ + +
Sbjct: 279 GDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG 338
Query: 207 AQLYSEFKNFF 217
+ YSE++ FF
Sbjct: 339 STTYSEYRQFF 349
>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
Liberibacter asiaticus str. psy62]
Length = 500
Score = 24.6 bits (52), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 3 KKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQ---LEVDKTMV 42
++TR F + +S+ T+ D LDY F E LE+D+ +
Sbjct: 269 QETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFI 311
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,461
Number of Sequences: 1233
Number of extensions: 19946
Number of successful extensions: 70
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 19
length of query: 805
length of database: 328,796
effective HSP length: 81
effective length of query: 724
effective length of database: 228,923
effective search space: 165740252
effective search space used: 165740252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)