HHsearch alignment for GI: 254780992 and conserved domain: COG4109
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription].
Probab=97.77 E-value=0.00045 Score=43.48 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=74.6
Q ss_pred EEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE
Q ss_conf 99848334274784308999999999999999997389832557520343214675738999999996216507999999
Q gi|254780992|r 36 KIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV 115 (152)
Q Consensus 36 ~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V 115 (152)
T Consensus 336 t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~-iyflk~vqid~~l~I~prIl~~gR~~a~idvei 414 (432)
T COG4109 336 TVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENIT-IYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEI 414 (432)
T ss_pred EEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-EEEECCEECCCEEEEEEEEECCCCCCCEEEEEE
T ss_conf 8996664604445002788999999999999998507856878443-306522302448998410200154211467999
Q ss_pred EEEC
Q ss_conf 9953
Q gi|254780992|r 116 WTCP 119 (152)
Q Consensus 116 ~~~~ 119 (152)
T Consensus 415 ~~~~ 418 (432)
T COG4109 415 YHDG 418 (432)
T ss_pred EECC
T ss_conf 6076