HHsearch alignment for GI: 254780992 and conserved domain: cd00556
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.41 E-value=0.042 Score=31.95 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=62.6
Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf 78430899999999999999999738983255752034321467573899999999621650799999999537788860
Q gi|254780992|r 47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDV 126 (152)
Q Consensus 47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~ 126 (152)
T Consensus 14 ~~~~~~~~la~~sd~~~~~~~~~~~~~~~~~sld~~~~F~~~~~~~~w~~~~v~~~~~g~~~~~~~~~~~q~-----~G- 87 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-----DG- 87 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEECC-----CC-
T ss_conf 889999999999999998754332677877860145786589999988999998140207951899999948-----99-
Q ss_pred EEEEEEEEEEE
Q ss_conf 89999999999
Q gi|254780992|r 127 LQKTCEATVVM 137 (152)
Q Consensus 127 ~~~v~~a~fTf 137 (152)
T Consensus 88 -~lvas~~q~~ 97 (99)
T cd00556 88 -KLVASATQSF 97 (99)
T ss_pred -CEEEEEEEEE
T ss_conf -7999998135