HHsearch alignment for GI: 254780992 and conserved domain: cd03443
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.41 E-value=1.1e-11 Score=88.04 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=85.6
Q ss_pred CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf 89983489998483342747843089999999999999999973--8983255752034321467573899999999621
Q gi|254780992|r 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152)
Q Consensus 28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152)
T Consensus 9 ~~~g~~~~~~~~~~~~~n~~g~~HGG~~~~l~D~~~g~~~~~~~~~~~~~vt~~l-~i~fl~p~~~-~~l~~~a~v~~~g 86 (113)
T cd03443 9 VGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDL-NVNYLRPARG-GDLTARARVVKLG 86 (113)
T ss_pred EECCEEEEEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-EEEEECCCCC-CEEEEEEEEEEEC
T ss_conf 9799999999989899599994807887788878899999851566502076215-7999757899-7699999999958
Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE
Q ss_conf 650799999999537788860899999999999
Q gi|254780992|r 106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV 138 (152)
Q Consensus 106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV 138 (152)
T Consensus 87 ~~~~~~~~~i~~~~-----g--~~~A~~~~~~~ 112 (113)
T cd03443 87 RRLAVVEVEVTDED-----G--KLVATARGTFA 112 (113)
T ss_pred CCEEEEEEEEEECC-----C--CEEEEEEEEEE
T ss_conf 88999999999599-----9--99999999998