HHsearch alignment for GI: 254780992 and conserved domain: cd03450
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=92.20 E-value=0.86 Score=24.25 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=40.4
Q ss_pred EEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC---CEEEEEEEEEEEC
Q ss_conf 308999999999999999997389-832557520343214675738999999996216---5079999999953
Q gi|254780992|r 50 VFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK---TSVTIYCDVWTCP 119 (152)
Q Consensus 50 lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~---tSm~V~V~V~~~~ 119 (152)
T Consensus 59 AHGfltLSl~~~~~~~~~-~~~~~~~~vNYG~dkvRF~~PV~vGs~vR~~~~l~~v~~~~~g~~~~~~~~tvEi 131 (149)
T cd03450 59 AHGFLTLSLLPALTPQLF-RVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEI 131 (149)
T ss_pred CCHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf 650669999998875266-7678433330033526706875679999999999998991898499999999999