HHSEARCH alignment of GI: 254780992 and SCOP domain: d1yoca1

Alignment
>d1yoca1 d.38.1.5 (A:1-145) Hypothetical protein PA1835 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.92  E-value=1e-08  Score=68.05  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             CCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC
Q ss_conf             99834899984833427478430899999999999999999738--9832557520343214675738999999996216
Q gi|254780992|r   29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK--CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK  106 (152)
Q Consensus        29 ~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~--~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~  106 (152)
                      .+|...++....|.+.|++|.+|||.+...+|.+++.++...-.  ...+|+.+ +++|++|++ |+ +.+.|++...++
T Consensus        38 ~~g~~~~~lp~~~~~~N~~g~~HGG~l~tlaD~a~g~a~~~~~~~~~~~~t~~l-~i~ylrpa~-g~-~~a~a~~~~~~~  114 (145)
T d1yoca1          38 RPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGM-TVEYLAKAT-GD-VRAVADGSQIDW  114 (145)
T ss_dssp             ETTEEEEEECCCGGGBCTTSSBCHHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE-EEEECSCCC-SC-EEEEEECTTSCT
T ss_pred             ECCEEEEEEECCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-EEEEEECCC-CC-EEEEEEEEEHEE
T ss_conf             799999999805798387771757788999999999888631786640588766-778710137-87-899999851100


Q ss_pred             C-EEEEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf             5-079999999953778886089999999999
Q gi|254780992|r  107 T-SVTIYCDVWTCPRNASSDVLQKTCEATVVM  137 (152)
Q Consensus       107 t-Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTf  137 (152)
                      . ..++.+.+....    ++  +++.++.+||
T Consensus       115 ~~~~~~~v~v~~~~----~~--~~Va~a~~t~  140 (145)
T d1yoca1         115 QATGNLVVPVVAYV----DD--KPVFRAEITM  140 (145)
T ss_dssp             TCCEEEEEEEEEEE----TT--EEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEC----CC--CEEEEEEEEE
T ss_conf             53238999999985----99--7899999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: PaaI/YdiI-like
domain: Hypothetical protein PA1835
species: Pseudomonas aeruginosa [TaxId: 287]