RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus
Liberibacter asiaticus str. psy62]
(152 letters)
>gnl|CDD|31795 COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].
Length = 157
Score = 124 bits (312), Expect = 1e-29
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
G L L+ MP+D N +G +FGGW++S +D+A I AS+ RVVT +V + F+KP
Sbjct: 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKP 69
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148
++V D+V +Y ++ G+TS+ + +VW + S + A VAVDE G P
Sbjct: 70 VRVGDIVCLYARVVYTGRTSMEVGVEVWA--EDIRSGERRLATSAYFTFVAVDEDGKPTP 127
Query: 149 IRTE 152
+ E
Sbjct: 128 VPRE 131
>gnl|CDD|48037 cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT). Brain
acyl-CoA hydrolase (BACH). These enzymes deacylate
long-chain fatty acids by hydrolyzing acyl-CoA
thioesters to free fatty acids and CoA-SH. Eukaryotic
members of this family are expressed in brain, testis,
and brown adipose tissues. The archeal and eukaryotic
members of this family have two tandem copies of the
conserved hot dog fold, while most bacterial members
have only one copy..
Length = 123
Score = 106 bits (265), Expect = 3e-24
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 26 QMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLF 85
L+ + +P D N G +FGGW++ +D GI A + RVVT +V + F
Sbjct: 1 VPMEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDF 60
Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGN 145
KP++V D+V + ++ G+TS+ + +V + + + A VA+DE G
Sbjct: 61 LKPVRVGDVVELSARVVYTGRTSMEVGVEVEA--EDPLTGERRLVTSAYFTFVALDEDGK 118
Query: 146 PKSI 149
P+ +
Sbjct: 119 PRPV 122
>gnl|CDD|145944 pfam03061, 4HBT, Thioesterase superfamily. This family contains a
wide variety of enzymes, principally thioesterases. This
family includes 4HBT (EC 3.1.2.23) which catalyses the
final step in the biosynthesis of 4-hydroxybenzoate from
4-chlorobenzoate in the soil dwelling microbe
Pseudomonas CBS-3. This family includes various
cytosolic long-chain acyl-CoA thioester hydrolases.
Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA
to CoA and palmitate, they also catalyse the hydrolysis
of other long chain fatty acyl-CoA thioesters.
Length = 79
Score = 58.8 bits (143), Expect = 6e-10
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 48 GNVFGGWIMSQIDIACGIRASQLC-KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106
G V GG ++ D A G A L +VV + F +P ++ D++ + ++ ++G+
Sbjct: 2 GVVHGGVYLALADEAAGAAARSLGGSGQVVVVVELNIDFLRPARLGDVLTVEARVVRLGR 61
Query: 107 TSVTIYCDVW 116
TS + +V
Sbjct: 62 TSAVVEVEVR 71
>gnl|CDD|37974 KOG2763, KOG2763, KOG2763, Acyl-CoA thioesterase [Lipid transport
and metabolism].
Length = 357
Score = 49.2 bits (117), Expect = 5e-07
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 27 MHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFE 86
M + V + +I P N+ G +FGG++M + I A CK R T++V ++ F+
Sbjct: 195 MKDTKVSSSEI-CQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQ 253
Query: 87 KPIQVSDLVHI 97
KP+ V ++
Sbjct: 254 KPVDVGCVLTF 264
Score = 31.9 bits (72), Expect = 0.070
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 38 QTMPTDVNLDGNVFGGW----IMSQIDIACGIR----ASQLC--KCRVVTKAVTELLFEK 87
+ +P N GN F G I+ +D R A + +VT +V + FEK
Sbjct: 14 EVLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEK 73
Query: 88 PIQVSDLVHIYT-QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNP 146
P +V + I ++ GK+S+ + V + ++ +AT VA D
Sbjct: 74 PSEVGQVDIIIVAKVTWAGKSSMEVSIYVMQ--EDLATGEKSLVLKATFTFVARDATNGK 131
Query: 147 KSI 149
+
Sbjct: 132 APL 134
>gnl|CDD|31166 COG0824, FcbC, Predicted thioesterase [General function prediction
only].
Length = 137
Score = 38.7 bits (90), Expect = 7e-04
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAV 140
E+ + +P ++ D++ + T++ ++G S+T+ ++ + +V V
Sbjct: 62 AEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNED--------ELLATGETTLVCV 113
Query: 141 DEKGN-----PKSIRTE 152
D K P +R
Sbjct: 114 DLKTGKPVPLPPELREA 130
>gnl|CDD|32233 COG2050, PaaI, Uncharacterized protein, possibly involved in
aromatic compounds catabolism [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 141
Score = 30.8 bits (69), Expect = 0.16
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTEL--LFEKP 88
G + P +N G + GG I + D A G+ A+ V EL F +P
Sbjct: 34 GEAEATLPVDPELLNPGGILHGGVIAALADSAAGL-AANSLLGVVALAVTLELNINFLRP 92
Query: 89 IQVSDLV---HIYTQIRKIGKTSVTIYCDV 115
++ D+ + R++ + + D
Sbjct: 93 VKEGDVTAEARVLHLGRRVAVVEIEVKNDE 122
>gnl|CDD|48038 cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric
acyl-CoA thioesterase with a hot dog fold and one of
several proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI
exist in archaea and eukaryotes, their function has not
been determined. Sequence similarity between PaaI, E.
coli medium chain acyl-CoA thioesterase II, and human
thioesterase III suggests they all belong to the same
thioesterase superfamily. The conserved fold present in
these thioesterases is referred to as an asymmetric hot
dog fold, similar to those of 4-hydroxybenzoyl-CoA
thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP
dehydratases (FabA/FabZ)..
Length = 113
Score = 30.2 bits (68), Expect = 0.24
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACG--IRASQLCKCRVVTKAVTELLFEKP 88
G + L++ P +N G V GG I + D A G ++ VT + + + +P
Sbjct: 12 GRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLN-VNYLRP 70
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWT 117
+ DL ++ K+G+ + +V
Sbjct: 71 ARGGDLT-ARARVVKLGRRLAVVEVEVTD 98
>gnl|CDD|33866 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 27.9 bits (62), Expect = 1.2
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 9 NLLLINIITKKEVLMVCQM----------------------HSSGVLTLKIQTMPTDVNL 46
N L+ IIT+++VL QM +T++++ P +N
Sbjct: 289 NNTLLGIITRQDVLKSLQMIQRQPQVGETISDQIANNLSEKGDEYGVTVEVE--PQMINS 346
Query: 47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106
G + G + +++ R + K R + + F KP+Q+ ++ IY +I + G+
Sbjct: 347 LGTISNG-VFTELLTEVVQRVLRKKKKRNIIIENITIYFLKPVQIDSVLEIYPRILEEGR 405
Query: 107 TSVTIYCDVW 116
I +++
Sbjct: 406 KFAKIDVEIY 415
>gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 27.2 bits (60), Expect = 1.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 83 LLFEKPIQVSDLVHIYT---QIRKIGKTSVTI 111
+LFE+P++V D V I T +RKI + TI
Sbjct: 655 ILFERPVKVGDTVTIGTVSGTVRKISVRATTI 686
>gnl|CDD|31094 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis].
Length = 691
Score = 26.3 bits (58), Expect = 3.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 53 GWIMSQI--DIACGIRASQLCKCRVVTKAVTE 82
+I Q+ D+ RA+ L K +VT+ V E
Sbjct: 374 AYIAPQLGADVEDADRAALLAKADLVTEMVGE 405
>gnl|CDD|144501 pfam00924, MS_channel, Mechanosensitive ion channel. Two members
of this protein family from M. jannaschii have been
functionally characterized. Both proteins form
mechanosensitive (MS) ion channels upon reconstitution
into liposomes and functional examination by the
patch-clamp technique. Therefore this family are likely
to also be MS channel proteins.
Length = 203
Score = 26.4 bits (59), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 83 LLFEKPIQVSDLVHI---YTQIRKIGKTSVTI 111
+LFEKP ++ D + I + IG S TI
Sbjct: 53 ILFEKPFKIGDWIEIGDVEGTVEDIGIRSTTI 84
>gnl|CDD|31812 COG1625, COG1625, Fe-S oxidoreductase, related to NifB/MoaA family
[Energy production and conversion].
Length = 414
Score = 24.9 bits (54), Expect = 9.9
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCE 132
+R+ + + ++ + CP + L+KT E
Sbjct: 166 LLRRFAERCIEVHAQIVLCPGVNDGEELEKTLE 198
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.134 0.397
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,640,805
Number of extensions: 72447
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 17
Length of query: 152
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,426,972
Effective search space: 296607124
Effective search space used: 296607124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)