RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >gnl|CDD|31795 COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]. Length = 157 Score = 124 bits (312), Expect = 1e-29 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 2/124 (1%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 G L L+ MP+D N +G +FGGW++S +D+A I AS+ RVVT +V + F+KP Sbjct: 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKP 69 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148 ++V D+V +Y ++ G+TS+ + +VW + S + A VAVDE G P Sbjct: 70 VRVGDIVCLYARVVYTGRTSMEVGVEVWA--EDIRSGERRLATSAYFTFVAVDEDGKPTP 127 Query: 149 IRTE 152 + E Sbjct: 128 VPRE 131 >gnl|CDD|48037 cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.. Length = 123 Score = 106 bits (265), Expect = 3e-24 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 26 QMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLF 85 L+ + +P D N G +FGGW++ +D GI A + RVVT +V + F Sbjct: 1 VPMEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDF 60 Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGN 145 KP++V D+V + ++ G+TS+ + +V + + + A VA+DE G Sbjct: 61 LKPVRVGDVVELSARVVYTGRTSMEVGVEVEA--EDPLTGERRLVTSAYFTFVALDEDGK 118 Query: 146 PKSI 149 P+ + Sbjct: 119 PRPV 122 >gnl|CDD|145944 pfam03061, 4HBT, Thioesterase superfamily. This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. Length = 79 Score = 58.8 bits (143), Expect = 6e-10 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 48 GNVFGGWIMSQIDIACGIRASQLC-KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106 G V GG ++ D A G A L +VV + F +P ++ D++ + ++ ++G+ Sbjct: 2 GVVHGGVYLALADEAAGAAARSLGGSGQVVVVVELNIDFLRPARLGDVLTVEARVVRLGR 61 Query: 107 TSVTIYCDVW 116 TS + +V Sbjct: 62 TSAVVEVEVR 71 >gnl|CDD|37974 KOG2763, KOG2763, KOG2763, Acyl-CoA thioesterase [Lipid transport and metabolism]. Length = 357 Score = 49.2 bits (117), Expect = 5e-07 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 27 MHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFE 86 M + V + +I P N+ G +FGG++M + I A CK R T++V ++ F+ Sbjct: 195 MKDTKVSSSEI-CQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQ 253 Query: 87 KPIQVSDLVHI 97 KP+ V ++ Sbjct: 254 KPVDVGCVLTF 264 Score = 31.9 bits (72), Expect = 0.070 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 13/123 (10%) Query: 38 QTMPTDVNLDGNVFGGW----IMSQIDIACGIR----ASQLC--KCRVVTKAVTELLFEK 87 + +P N GN F G I+ +D R A + +VT +V + FEK Sbjct: 14 EVLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEK 73 Query: 88 PIQVSDLVHIYT-QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNP 146 P +V + I ++ GK+S+ + V + ++ +AT VA D Sbjct: 74 PSEVGQVDIIIVAKVTWAGKSSMEVSIYVMQ--EDLATGEKSLVLKATFTFVARDATNGK 131 Query: 147 KSI 149 + Sbjct: 132 APL 134 >gnl|CDD|31166 COG0824, FcbC, Predicted thioesterase [General function prediction only]. Length = 137 Score = 38.7 bits (90), Expect = 7e-04 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 13/77 (16%) Query: 81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAV 140 E+ + +P ++ D++ + T++ ++G S+T+ ++ + +V V Sbjct: 62 AEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNED--------ELLATGETTLVCV 113 Query: 141 DEKGN-----PKSIRTE 152 D K P +R Sbjct: 114 DLKTGKPVPLPPELREA 130 >gnl|CDD|32233 COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 141 Score = 30.8 bits (69), Expect = 0.16 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTEL--LFEKP 88 G + P +N G + GG I + D A G+ A+ V EL F +P Sbjct: 34 GEAEATLPVDPELLNPGGILHGGVIAALADSAAGL-AANSLLGVVALAVTLELNINFLRP 92 Query: 89 IQVSDLV---HIYTQIRKIGKTSVTIYCDV 115 ++ D+ + R++ + + D Sbjct: 93 VKEGDVTAEARVLHLGRRVAVVEIEVKNDE 122 >gnl|CDD|48038 cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).. Length = 113 Score = 30.2 bits (68), Expect = 0.24 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACG--IRASQLCKCRVVTKAVTELLFEKP 88 G + L++ P +N G V GG I + D A G ++ VT + + + +P Sbjct: 12 GRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLN-VNYLRP 70 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWT 117 + DL ++ K+G+ + +V Sbjct: 71 ARGGDLT-ARARVVKLGRRLAVVEVEVTD 98 >gnl|CDD|33866 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]. Length = 432 Score = 27.9 bits (62), Expect = 1.2 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%) Query: 9 NLLLINIITKKEVLMVCQM----------------------HSSGVLTLKIQTMPTDVNL 46 N L+ IIT+++VL QM +T++++ P +N Sbjct: 289 NNTLLGIITRQDVLKSLQMIQRQPQVGETISDQIANNLSEKGDEYGVTVEVE--PQMINS 346 Query: 47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106 G + G + +++ R + K R + + F KP+Q+ ++ IY +I + G+ Sbjct: 347 LGTISNG-VFTELLTEVVQRVLRKKKKRNIIIENITIYFLKPVQIDSVLEIYPRILEEGR 405 Query: 107 TSVTIYCDVW 116 I +++ Sbjct: 406 KFAKIDVEIY 415 >gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]. Length = 835 Score = 27.2 bits (60), Expect = 1.8 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query: 83 LLFEKPIQVSDLVHIYT---QIRKIGKTSVTI 111 +LFE+P++V D V I T +RKI + TI Sbjct: 655 ILFERPVKVGDTVTIGTVSGTVRKISVRATTI 686 >gnl|CDD|31094 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]. Length = 691 Score = 26.3 bits (58), Expect = 3.1 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 53 GWIMSQI--DIACGIRASQLCKCRVVTKAVTE 82 +I Q+ D+ RA+ L K +VT+ V E Sbjct: 374 AYIAPQLGADVEDADRAALLAKADLVTEMVGE 405 >gnl|CDD|144501 pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 203 Score = 26.4 bits (59), Expect = 3.4 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 83 LLFEKPIQVSDLVHI---YTQIRKIGKTSVTI 111 +LFEKP ++ D + I + IG S TI Sbjct: 53 ILFEKPFKIGDWIEIGDVEGTVEDIGIRSTTI 84 >gnl|CDD|31812 COG1625, COG1625, Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]. Length = 414 Score = 24.9 bits (54), Expect = 9.9 Identities = 7/33 (21%), Positives = 16/33 (48%) Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCE 132 +R+ + + ++ + CP + L+KT E Sbjct: 166 LLRRFAERCIEVHAQIVLCPGVNDGEELEKTLE 198 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.134 0.397 Gapped Lambda K H 0.267 0.0753 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,640,805 Number of extensions: 72447 Number of successful extensions: 147 Number of sequences better than 10.0: 1 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 17 Length of query: 152 Length of database: 6,263,737 Length adjustment: 85 Effective length of query: 67 Effective length of database: 4,426,972 Effective search space: 296607124 Effective search space used: 296607124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.1 bits)