RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus
Liberibacter asiaticus str. psy62]
(152 letters)
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consortium, SGC, cytoplasm, fatty
acid metabolism, hydrolase; HET: COA; 2.70A {Homo
sapiens}
Length = 333
Score = 111 bits (278), Expect = 8e-26
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99
+P N GN FGG IM+ ++ I AS+LC K+V F P V D +
Sbjct: 207 LPPHANHHGNTFGGQIMAWMETVATISASRLCWAHPFLKSVDMFKFRGPSTVGDRLVFTA 266
Query: 100 QIRKIGKTSVTIYCDVWT-CPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150
+ +T V + V + + + A ++ A D+K N +
Sbjct: 267 IVNNTFQTCVEVGVRVEAFDCQEWAEGRGRHINSAFLIYNAADDKENLITFP 318
Score = 104 bits (260), Expect = 1e-23
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEK 87
S G + + P G + G ++ ID + A + VT +V ++ FE+
Sbjct: 21 QSMGEVVMSQAIQPAHATARGELSAGQLLKWIDTTACLAAEKHAGVSCVTASVDDIQFEE 80
Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPK 147
+V ++ I ++ + TS+ I V ++ + + + A VA
Sbjct: 81 TARVGQVITIKAKVTRAFSTSMEISIKVMV--QDMLTGIEKLVSVAFSTFVAKPVGKEKI 138
Query: 148 SI 149
+
Sbjct: 139 HL 140
>2gvh_A AGR_L_2016P; 15159470, acyl-COA hydrolase, structural genomics,
joint center for structural genomics, JCSG; 2.50A
{Agrobacterium tumefaciens str} SCOP: d.38.1.1 d.38.1.1
Length = 288
Score = 101 bits (253), Expect = 6e-23
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 23 MVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTE 82
S +T+ P N G +FGG ++ + A + AS+ C VV +
Sbjct: 150 TEETPDPSDAVTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYCGKLVVLASSER 209
Query: 83 LLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142
+ F + I++ ++V + ++G++S++I +W+ N + T MVAVD+
Sbjct: 210 IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS--ENLLTGERHITATGHFTMVAVDK 267
Query: 143 KGNPKSIR 150
P +IR
Sbjct: 268 DHRPATIR 275
Score = 97.8 bits (243), Expect = 1e-21
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99
P D N G +FGG ++ +D I A++ + VT + + F +P ++ +V
Sbjct: 36 FPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTASCERIDFRQPARIGHIVEFTA 95
Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149
+ K G+ S+T+ ++ MVA+ E + S
Sbjct: 96 RPVKAGRRSLTVEVEMVA--ETIIGRQQHTCTRGIFHMVAIPEGEDAASY 143
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national
project on protein structural and functional analyses;
HET: COA; 2.10A {Thermus thermophilus HB8}
Length = 133
Score = 101 bits (252), Expect = 9e-23
Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99
P + N G +FGG +++ +D A + A++ + +VVT + F++P+ + +V +
Sbjct: 11 FPGETNHYGTLFGGTVLAWMDQAAFVAATRHARKKVVTVHADAVDFKRPVPLGAIVELVA 70
Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149
+++++G+TS+ + ++W P + V+VAVDE+G P +
Sbjct: 71 RLKEVGRTSMRVEVEMWVEPVK-EGEEAYLAARGGFVLVAVDERGRPSPV 119
>3bjk_A Acyl-COA thioester hydrolase HI0827; hotdog fold, trimer of dimers,
YCIA, structural genomics, structure 2 function project,
S2F; HET: CIT; 1.90A {Haemophilus influenzae rd KW20}
PDB: 1yli_A*
Length = 153
Score = 101 bits (252), Expect = 9e-23
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEK 87
S GVL L+ MP+D N +G++FGGWIMSQ+ + I A ++ RVVT AV + F K
Sbjct: 11 QSKGVLLLRTLAMPSDTNANGDIFGGWIMSQMAMGGAILAKEIAHGRVVTVAVESMNFIK 70
Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWT-CPRNASSDVLQKTCEATVVMVAVDEKGNP 146
PI V D+V Y Q K+G++S+ I +VW + +A VAVD G
Sbjct: 71 PISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDAVFTFVAVDNNGRS 130
Query: 147 KSI 149
++I
Sbjct: 131 RTI 133
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain, thioesterase, structural genomics, structural
genomics consortium, SGC; 2.80A {Homo sapiens}
Length = 193
Score = 99.3 bits (247), Expect = 3e-22
Identities = 29/111 (26%), Positives = 48/111 (43%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99
P+D L G V GG M +D GI A++ CK +VT +V + F I+ ++ I
Sbjct: 50 GPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISG 109
Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150
++ S+ I V P SS + A V++ ++G +
Sbjct: 110 RMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVP 160
>2q2b_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain; 2.50A {Mus musculus}
Length = 179
Score = 97.8 bits (243), Expect = 9e-22
Identities = 31/122 (25%), Positives = 53/122 (43%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
S +L P+D L G V GG M +D GI A++ CK +VT +V + F
Sbjct: 23 SYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDK 82
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148
I+ ++ I ++ S+ I V P +S + A V+++++G P
Sbjct: 83 IRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKPMP 142
Query: 149 IR 150
+
Sbjct: 143 VP 144
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A
{Campylobacter jejuni}
Length = 137
Score = 94.7 bits (235), Expect = 7e-21
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 27 MHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFE 86
M G LKI MP+D N GN+FGGWI+SQID+A I A +L RVVT ++ +++F+
Sbjct: 1 MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAARELSPERVVTISMDKVVFK 60
Query: 87 KPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTC-PRNASSDVLQKTCEATVVMVAVDEKGN 145
+P+ + D++ Y+++ +G TS+++ +V + A V V+V G
Sbjct: 61 EPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSCINVTSALVTYVSVTRDGK 120
Query: 146 PKSIRTE 152
I E
Sbjct: 121 KNPISEE 127
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI; HET: COA; 1.66A {Bacillus halodurans
c-125} SCOP: d.38.1.1
Length = 169
Score = 94.0 bits (233), Expect = 1e-20
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99
+P D N G +FGG +++ ID + A + VVT ++ + F+ V D + +
Sbjct: 31 LPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEG 90
Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150
+ G+TS+ +Y V + N + T E+ + MVAVDE G PK +
Sbjct: 91 FVTHTGRTSMEVYVRVHSN--NLLTGERTLTTESFLTMVAVDESGKPKPVP 139
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; alternative
splicing, acyl-COA thioesterase 7, serine esterase,
protein structure, domain duplication; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 92.8 bits (230), Expect = 3e-20
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSD 93
P D N+ GNV GG I+ I+ A I +++ C C V F P+ + +
Sbjct: 7 RPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGE 66
Query: 94 LVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149
+ H+ +I K SV + V + + L V +++ +
Sbjct: 67 VAHVSAEITYTSKHSVEVQVHVMSENILTGTKKLTNKATLWYVPLSLKNVDKVLEV 122
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein
structure initiative, PSI, midwest center for structural
genomics, MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP:
d.38.1.1
Length = 174
Score = 85.2 bits (210), Expect = 6e-18
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
+ + + PTD+N +FGG I+S++D+ I AS+ + VT ++ + F P
Sbjct: 16 NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHP 75
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148
++ SD V + + G+TS+ ++ V + + + V VA+ ++ NP
Sbjct: 76 VRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKR--IAATSFVTFVALSKENNPVP 133
Query: 149 I 149
+
Sbjct: 134 V 134
>2h4u_A Thioesterase superfamily member 2; structural genomics, structural
genomics consortium, SGC, hydrolase; 2.20A {Homo
sapiens} SCOP: d.38.1.5
Length = 145
Score = 53.2 bits (127), Expect = 2e-08
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G + +++ N G + GG + +D + + + + P +
Sbjct: 41 GKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAK 100
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEAT 134
+ + + I + K GKT D+ N ++ L T
Sbjct: 101 LGEDIVITAHVLKQGKTLAFTSVDLT----NKATGKLIAQGRHT 140
>3nwz_A BH2602 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
unknown function; HET: COA; 2.57A {Bacillus halodurans}
Length = 176
Score = 48.8 bits (116), Expect = 5e-07
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLF 85
G +++ P N V GG + +D A G ++ VT + + +
Sbjct: 59 REDGRFEVRLPIGPLVNNPLNMVHGGITATLLDTAMGQMVNRQLPDGQSAVTSELN-IHY 117
Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKG 144
KP + I GK + + V+ + + T + +G
Sbjct: 118 VKPGM-GTYLRAVASIVHQGKQRIVVEGKVY----TDQGETV---AMGTGSFFVLRSRG 168
>2hbo_A Hypothetical protein (NP_422103.1); structural genomics, PSI- 2,
protein structure initiative, joint center for
structural genomics, JCSG; HET: MSE PE4; 1.85A
{Caulobacter vibrioides} SCOP: d.38.1.5
Length = 158
Score = 48.1 bits (114), Expect = 7e-07
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G L + N GN GG +MS D+A G S VT + F +
Sbjct: 42 GQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSWVTVRLM-CDFLSGAK 100
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVW 116
+ D V ++ T+ +W
Sbjct: 101 LGDWVEGEGELISEEDMLFTVRGRIW 126
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC
COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A* 2cy9_A
Length = 148
Score = 47.3 bits (112), Expect = 2e-06
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
+ G + +++ N G + GG + +D + + + + P
Sbjct: 34 APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSP 93
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEAT 134
++ + + I + K GKT D+ N ++ L T
Sbjct: 94 AKLGEDIVITAHVLKQGKTLAFTSVDLT----NKATGKLIAQGRHT 135
>2qwz_A Phenylacetic acid degradation-related protein; YP_613385.1,
putative thioesterase, structural genomics, joint center
for structural genomics; HET: MSE; 2.15A {Silicibacter
SP}
Length = 159
Score = 46.6 bits (110), Expect = 2e-06
Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEK 87
+ G +T+++ + G V G + + D++ + L F +
Sbjct: 50 AKGEITMRLNVQERHLRPGGTVSGPSMFALADVSVYALVLAHLGREALAVTTNASLDFMR 109
Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWT 117
+ + ++ K+G+T +++
Sbjct: 110 KPESGRDLLGQARLLKLGRTLAVGDILLFS 139
>3lw3_A HP0420 homologue; hotdog-fold, structural genomics, unknown
function; 1.60A {Helicobacter felis} PDB: 3lwg_A
Length = 145
Score = 46.6 bits (110), Expect = 3e-06
Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G T+ + + D V G+I+ A K + + ++ PI+
Sbjct: 36 GKATVCLTPKEFMLCEDDVVHAGFIVGAASFAALCAL---NKKNSLI-SSMKVNLLAPIE 91
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143
+ ++ I TI + + K E ++ +++
Sbjct: 92 IKQEIYFNATITHTSSKKSTIRVEGE--------FMEIKVFEGDFEILVFEKR 136
>1wlu_A PAAI protein, phenylacetic acid degradation protein PAAI;
thioesterase, hot DOG fold, structural genomics; 1.45A
{Thermus thermophilus HB8} SCOP: d.38.1.5 PDB: 1j1y_A
1wlv_A* 1wm6_A 1wn3_A* 2dsl_A
Length = 136
Score = 46.2 bits (109), Expect = 3e-06
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 11/118 (9%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
+ G + + +NL G GG++ + D A + ++ ++ + +P
Sbjct: 17 APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALSCRMDYF---RP 73
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNP 146
+ V + + + T +V + T + + G+
Sbjct: 74 LGAGARVEARAVEVNLSRRTATYRVEVV--------SEGKLVALFTGTVFRLGGDGDD 123
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural
genomics, unknown function; 1.94A {Pyrococcus
horikoshii} SCOP: d.38.1.5
Length = 131
Score = 43.3 bits (102), Expect = 2e-05
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 44 VNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103
V+ G V GG+ D A V E+ F KP++V D + +I +
Sbjct: 40 VDEKGLVHGGFTFGLADYAAM----LAVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIE 95
Query: 104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143
+ V+ + + E +++
Sbjct: 96 DLGKKKIVEVKVY------REE--EVVLEGKFYCYVLEKH 127
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Rhodococcus SP} SCOP: d.38.1.5
Length = 216
Score = 38.8 bits (90), Expect = 5e-04
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 23 MVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTE 82
+V + S G + + G+V GG +D A+ +T A
Sbjct: 102 VVLEGLSDGSVRGTVTLTIPYQGPPGHVHGGVSALLLDHVL-GVANAWGGKAGMT-AQLS 159
Query: 83 LLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142
+ +P + + + + ++ + +T D+ A V + V
Sbjct: 160 TRYHRPTPLFEPLTLTGKLMSVDGRKITTAGDIR----TADGQVC---VSVEGLFVDKTV 212
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious
disease, rhizobiales, bacteremia, endocarditis,
bacillary angiomatosis; 2.50A {Bartonella henselae}
Length = 167
Score = 37.7 bits (87), Expect = 0.001
Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIA-------CGIRASQLCKCRVVTKAV 80
H++ + + D + G V+ + + G + L K
Sbjct: 32 HTNAFHDFQARVYVADTDFSGVVYHARYLEFFERGRSEFLRDTGFNNTLLASGVEGEKLF 91
Query: 81 -----TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATV 135
E+ F +P Q+ +L+ I T+I ++ + + A V
Sbjct: 92 FVVRHMEINFSRPAQIDNLLTIKTRISRLQGARFFMEQYILHGESML--------VTAKV 143
Query: 136 VMVAVDEKGNPKSI 149
+ ++E+G P+ +
Sbjct: 144 EIALINEEGKPRRL 157
>3f1t_A Uncharacterized protein Q9I3C8_pseae; PAR319A, NESG, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.20A {Pseudomonas aeruginosa}
Length = 148
Score = 37.7 bits (87), Expect = 0.001
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVT-ELLFEKPIQ 90
L L G V GG I + +D CGI + + + + + P +
Sbjct: 36 TLRLPYSQAIIGNPESGVVHGGAITTLMDTTCGISTVCVLPDFEICPTLDLRIDYMHPAE 95
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWT 117
V+ + + ++ + +
Sbjct: 96 PHKDVYGFAECYRVTPNVIFTRGFAYQ 122
>2xem_A DYNE7, TEBC; biosynthetic protein, polyketide biosynthesis,
enediyne anti agent, thioesterase; HET: SSV; 2.10A
{Micromonospora chersina} PDB: 2xfl_A
Length = 150
Score = 35.4 bits (81), Expect = 0.005
Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 13/126 (10%)
Query: 34 TLKIQTMPTDVNLDGNVFGGWIMSQIDIA-------CGIRASQLCKCRVVT-KAVTELLF 85
+ + NL GNV+ + + F
Sbjct: 12 VHRHVVTFDETNLVGNVYFAHYLHWQGHCREHFLADHAPGVMAALADGLALVTVDCHADF 71
Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKG 144
D V + + ++ + + D + + + +
Sbjct: 72 YAEGSAFDEVEVRMMLDRLDGHRIAMSFDYV----RVAPGPPTLLAQGRQTVACMRRAGH 127
Query: 145 NPKSIR 150
+ +
Sbjct: 128 GLEPVE 133
>3dkz_A Thioesterase superfamily protein; Q7W9W5, borpa, PF03061, NESG,
BPR208C, structural genomics, PSI-2, protein structure
initiative; 2.40A {Bordetella parapertussis}
Length = 142
Score = 33.4 bits (76), Expect = 0.019
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G ++ VN G++ GG +MS +D G V F P
Sbjct: 29 GTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSP-- 86
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWT 117
+ I T+ + G + ++
Sbjct: 87 GRGDLVIETRCLRRGASIAFCEGEIRD 113
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex,
gene regulation; HET: MLC; 3.10A {Bacillus subtilis}
SCOP: d.38.1.5
Length = 157
Score = 31.1 bits (70), Expect = 0.10
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 50 VFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSV 109
G + +Q + +T A ++ F + ++ + V ++ + K
Sbjct: 74 ARGHHLFAQANSLAVAVID---DELALT-ASADIRFTRQVKQGERVVAKAKVTAVEKEKG 129
Query: 110 TIYCDVWT 117
+V +
Sbjct: 130 RTVVEVNS 137
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.12
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 17/47 (36%)
Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCE 132
EK Q ++K+ + S+ +Y D + P A ++ T E
Sbjct: 18 EK--QA---------LKKL-QASLKLYADD-SAPALA----IKATME 47
>3hdu_A Putative thioesterase; YP_461911.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE; 2.50A {Syntrophus aciditrophicus
SB}
Length = 157
Score = 30.8 bits (69), Expect = 0.13
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQV 91
L+ +++ + ++GG I S ID+ G+ A + ++ K + E L
Sbjct: 43 KLSFEMRDELIGNAIRRMLYGGVISSAIDMTAGLAAFMGFQEKMSGKPMEEKLAMIGRLS 102
Query: 92 S-------------DLVHIYTQIRKIGKTSVTIYCDVW 116
+ + G I ++
Sbjct: 103 TMSLHVEYLRPGLGREFVCTGYNVRTGNKVAVIRTELM 140
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt,
cobalamin; HET: B12; 2.05A {Escherichia coli} PDB:
3abo_A* 3abr_A* 3abs_A*
Length = 453
Score = 30.2 bits (68), Expect = 0.20
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 9 NLLLINIITKKEVLMVCQ--MHSSGVLTLKIQ-TMPTDVNLDG---NVFGGWIMSQIDIA 62
N LI K V+ + G + ++Q D ++ ++ G D
Sbjct: 131 NADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRD-DVQSIAAQIYEGLSFGVGDAV 189
Query: 63 CGIR--ASQLCKCRVVTKAVTELL--FEKPIQVSDLVHIYTQIRKIGK 106
G+ + V + ++ F P Q L H+ TQI I +
Sbjct: 190 IGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRR 237
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta
dimeric protein with A fold resembling A hotdog, PSI;
1.70A {Shewanella oneidensis mr-1} SCOP: d.38.1.5
Length = 155
Score = 29.3 bits (65), Expect = 0.35
Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 39 TMPTDVNLDGNVFGGWIMSQIDIACGI----RASQLCKCRVVTKAVTELLFEKPIQVSDL 94
+ ++NL +F G I + + + + L + A + + P+ +
Sbjct: 49 PLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPE 108
Query: 95 VH------IYTQIRKIGKTSVTIYCDVW 116
V + +++ K V + ++
Sbjct: 109 VKVRWPDTNLSPLQRGRKAKVKLEVQLF 136
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Shewanella oneidensis}
Length = 164
Score = 29.3 bits (65), Expect = 0.40
Identities = 8/98 (8%), Positives = 24/98 (24%), Gaps = 13/98 (13%)
Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQV 91
+ + ++ + GG + +D+ G+ A + EL
Sbjct: 50 EVAINMKPELIGNIHQQILHGGVTATVLDVVGGLTAFAGLVASRDDWTIEELQQRLQTLG 109
Query: 92 S-------------DLVHIYTQIRKIGKTSVTIYCDVW 116
+ + + + G ++
Sbjct: 110 TIDMRVDYLRPGRGQIFTGTGSVIRAGNRVSVCRMELH 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 28.8 bits (64), Expect = 0.54
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 40/88 (45%)
Query: 1 MVDISKNINLLLINIITKKEV--LMVCQMHSS-------------GVLTLKIQTMPTDVN 45
+ +S +I+ +++ I + V Q ++ GVLT + N
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR--------N 519
Query: 46 LDGNVFGGWIMSQIDIACGIR---ASQL 70
DG G+R A L
Sbjct: 520 KDG--------------TGVRVIVAGTL 533
>2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1, ethanolamine
ammonia lyase large subunit (EUTB), structural genomics;
HET: MSE; 2.15A {Listeria monocytogenes str}
Length = 455
Score = 25.8 bits (57), Expect = 4.4
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 31 GVLTLKIQ-TMPTDVNLDG---NVFGGWIMSQIDIACGIR--ASQLCKCRVVTKAVTELL 84
G + ++Q PTD + DG ++ G D G+ + E
Sbjct: 156 GTFSARLQPNHPTD-DPDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEEFR 214
Query: 85 --FEKPIQVSDLVHIYTQIRKIGK 106
++ P Q L H+ TQ+ + +
Sbjct: 215 SKWDVPTQTCVLAHVKTQMEAMRR 238
>2ess_A Acyl-ACP thioesterase; NP_810988.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: d.38.1.8
d.38.1.8
Length = 248
Score = 25.5 bits (55), Expect = 5.9
Identities = 5/53 (9%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 59 IDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTI 111
I+ + +L + + + + E+ + D + + + V +
Sbjct: 182 IEHILDLFPIELYQTKRIRRF--EMAYVAESYFGDELSFFCDEVSENEFHVEV 232
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagella, unknown function;
HET: MSE; 2.60A {Campylobacter jejuni}
Length = 152
Score = 24.9 bits (54), Expect = 7.6
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 11/99 (11%)
Query: 45 NLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI 104
+ G +F +I + + + K V + L +
Sbjct: 60 DDQGLIFDAFIFAAANYVAQA---SINKEFSVIIGSKCFFYAPLKLGDVLELEAHALFDE 116
Query: 105 GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143
+ K E T+ +V+ DE
Sbjct: 117 TSKKRDVKVVGH--------VKEIKMFEGTIQVVSTDEH 147
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent,
transport, cell membrane, transmembrane, membrane
protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Length = 1052
Score = 24.7 bits (53), Expect = 7.8
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 75 VVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQK 129
V V +++ ++ + +L +I ++ G ++T+ + T P A V K
Sbjct: 56 TVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNK 110
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.134 0.397
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,216,386
Number of extensions: 48158
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 41
Length of query: 152
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 68
Effective length of database: 3,656,734
Effective search space: 248657912
Effective search space used: 248657912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)