RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics, structural genomics consortium, SGC, cytoplasm, fatty acid metabolism, hydrolase; HET: COA; 2.70A {Homo sapiens} Length = 333 Score = 111 bits (278), Expect = 8e-26 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99 +P N GN FGG IM+ ++ I AS+LC K+V F P V D + Sbjct: 207 LPPHANHHGNTFGGQIMAWMETVATISASRLCWAHPFLKSVDMFKFRGPSTVGDRLVFTA 266 Query: 100 QIRKIGKTSVTIYCDVWT-CPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150 + +T V + V + + + A ++ A D+K N + Sbjct: 267 IVNNTFQTCVEVGVRVEAFDCQEWAEGRGRHINSAFLIYNAADDKENLITFP 318 Score = 104 bits (260), Expect = 1e-23 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%) Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEK 87 S G + + P G + G ++ ID + A + VT +V ++ FE+ Sbjct: 21 QSMGEVVMSQAIQPAHATARGELSAGQLLKWIDTTACLAAEKHAGVSCVTASVDDIQFEE 80 Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPK 147 +V ++ I ++ + TS+ I V ++ + + + A VA Sbjct: 81 TARVGQVITIKAKVTRAFSTSMEISIKVMV--QDMLTGIEKLVSVAFSTFVAKPVGKEKI 138 Query: 148 SI 149 + Sbjct: 139 HL 140 >2gvh_A AGR_L_2016P; 15159470, acyl-COA hydrolase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Agrobacterium tumefaciens str} SCOP: d.38.1.1 d.38.1.1 Length = 288 Score = 101 bits (253), Expect = 6e-23 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 23 MVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTE 82 S +T+ P N G +FGG ++ + A + AS+ C VV + Sbjct: 150 TEETPDPSDAVTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYCGKLVVLASSER 209 Query: 83 LLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142 + F + I++ ++V + ++G++S++I +W+ N + T MVAVD+ Sbjct: 210 IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS--ENLLTGERHITATGHFTMVAVDK 267 Query: 143 KGNPKSIR 150 P +IR Sbjct: 268 DHRPATIR 275 Score = 97.8 bits (243), Expect = 1e-21 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99 P D N G +FGG ++ +D I A++ + VT + + F +P ++ +V Sbjct: 36 FPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTASCERIDFRQPARIGHIVEFTA 95 Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149 + K G+ S+T+ ++ MVA+ E + S Sbjct: 96 RPVKAGRRSLTVEVEMVA--ETIIGRQQHTCTRGIFHMVAIPEGEDAASY 143 >2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national project on protein structural and functional analyses; HET: COA; 2.10A {Thermus thermophilus HB8} Length = 133 Score = 101 bits (252), Expect = 9e-23 Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 1/110 (0%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99 P + N G +FGG +++ +D A + A++ + +VVT + F++P+ + +V + Sbjct: 11 FPGETNHYGTLFGGTVLAWMDQAAFVAATRHARKKVVTVHADAVDFKRPVPLGAIVELVA 70 Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149 +++++G+TS+ + ++W P + V+VAVDE+G P + Sbjct: 71 RLKEVGRTSMRVEVEMWVEPVK-EGEEAYLAARGGFVLVAVDERGRPSPV 119 >3bjk_A Acyl-COA thioester hydrolase HI0827; hotdog fold, trimer of dimers, YCIA, structural genomics, structure 2 function project, S2F; HET: CIT; 1.90A {Haemophilus influenzae rd KW20} PDB: 1yli_A* Length = 153 Score = 101 bits (252), Expect = 9e-23 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEK 87 S GVL L+ MP+D N +G++FGGWIMSQ+ + I A ++ RVVT AV + F K Sbjct: 11 QSKGVLLLRTLAMPSDTNANGDIFGGWIMSQMAMGGAILAKEIAHGRVVTVAVESMNFIK 70 Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWT-CPRNASSDVLQKTCEATVVMVAVDEKGNP 146 PI V D+V Y Q K+G++S+ I +VW + +A VAVD G Sbjct: 71 PISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDAVFTFVAVDNNGRS 130 Query: 147 KSI 149 ++I Sbjct: 131 RTI 133 >2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal domain, thioesterase, structural genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} Length = 193 Score = 99.3 bits (247), Expect = 3e-22 Identities = 29/111 (26%), Positives = 48/111 (43%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99 P+D L G V GG M +D GI A++ CK +VT +V + F I+ ++ I Sbjct: 50 GPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISG 109 Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150 ++ S+ I V P SS + A V++ ++G + Sbjct: 110 RMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVP 160 >2q2b_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal domain; 2.50A {Mus musculus} Length = 179 Score = 97.8 bits (243), Expect = 9e-22 Identities = 31/122 (25%), Positives = 53/122 (43%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 S +L P+D L G V GG M +D GI A++ CK +VT +V + F Sbjct: 23 SYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDK 82 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148 I+ ++ I ++ S+ I V P +S + A V+++++G P Sbjct: 83 IRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKPMP 142 Query: 149 IR 150 + Sbjct: 143 VP 144 >3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A {Campylobacter jejuni} Length = 137 Score = 94.7 bits (235), Expect = 7e-21 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%) Query: 27 MHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFE 86 M G LKI MP+D N GN+FGGWI+SQID+A I A +L RVVT ++ +++F+ Sbjct: 1 MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAARELSPERVVTISMDKVVFK 60 Query: 87 KPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTC-PRNASSDVLQKTCEATVVMVAVDEKGN 145 +P+ + D++ Y+++ +G TS+++ +V + A V V+V G Sbjct: 61 EPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSCINVTSALVTYVSVTRDGK 120 Query: 146 PKSIRTE 152 I E Sbjct: 121 KNPISEE 127 >1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: COA; 1.66A {Bacillus halodurans c-125} SCOP: d.38.1.1 Length = 169 Score = 94.0 bits (233), Expect = 1e-20 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99 +P D N G +FGG +++ ID + A + VVT ++ + F+ V D + + Sbjct: 31 LPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEG 90 Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150 + G+TS+ +Y V + N + T E+ + MVAVDE G PK + Sbjct: 91 FVTHTGRTSMEVYVRVHSN--NLLTGERTLTTESFLTMVAVDESGKPKPVP 139 >2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; alternative splicing, acyl-COA thioesterase 7, serine esterase, protein structure, domain duplication; HET: COA; 1.78A {Mus musculus} Length = 151 Score = 92.8 bits (230), Expect = 3e-20 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 6/116 (5%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSD 93 P D N+ GNV GG I+ I+ A I +++ C C V F P+ + + Sbjct: 7 RPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGE 66 Query: 94 LVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149 + H+ +I K SV + V + + L V +++ + Sbjct: 67 VAHVSAEITYTSKHSVEVQVHVMSENILTGTKKLTNKATLWYVPLSLKNVDKVLEV 122 >1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP: d.38.1.1 Length = 174 Score = 85.2 bits (210), Expect = 6e-18 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 + + + PTD+N +FGG I+S++D+ I AS+ + VT ++ + F P Sbjct: 16 NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHP 75 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148 ++ SD V + + G+TS+ ++ V + + + V VA+ ++ NP Sbjct: 76 VRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKR--IAATSFVTFVALSKENNPVP 133 Query: 149 I 149 + Sbjct: 134 V 134 >2h4u_A Thioesterase superfamily member 2; structural genomics, structural genomics consortium, SGC, hydrolase; 2.20A {Homo sapiens} SCOP: d.38.1.5 Length = 145 Score = 53.2 bits (127), Expect = 2e-08 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 4/104 (3%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G + +++ N G + GG + +D + + + + P + Sbjct: 41 GKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAK 100 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEAT 134 + + + I + K GKT D+ N ++ L T Sbjct: 101 LGEDIVITAHVLKQGKTLAFTSVDLT----NKATGKLIAQGRHT 140 >3nwz_A BH2602 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; HET: COA; 2.57A {Bacillus halodurans} Length = 176 Score = 48.8 bits (116), Expect = 5e-07 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%) Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLF 85 G +++ P N V GG + +D A G ++ VT + + + Sbjct: 59 REDGRFEVRLPIGPLVNNPLNMVHGGITATLLDTAMGQMVNRQLPDGQSAVTSELN-IHY 117 Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKG 144 KP + I GK + + V+ + + T + +G Sbjct: 118 VKPGM-GTYLRAVASIVHQGKQRIVVEGKVY----TDQGETV---AMGTGSFFVLRSRG 168 >2hbo_A Hypothetical protein (NP_422103.1); structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE PE4; 1.85A {Caulobacter vibrioides} SCOP: d.38.1.5 Length = 158 Score = 48.1 bits (114), Expect = 7e-07 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 1/86 (1%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G L + N GN GG +MS D+A G S VT + F + Sbjct: 42 GQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSWVTVRLM-CDFLSGAK 100 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVW 116 + D V ++ T+ +W Sbjct: 101 LGDWVEGEGELISEEDMLFTVRGRIW 126 >3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A* 2cy9_A Length = 148 Score = 47.3 bits (112), Expect = 2e-06 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 4/106 (3%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 + G + +++ N G + GG + +D + + + + P Sbjct: 34 APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSP 93 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEAT 134 ++ + + I + K GKT D+ N ++ L T Sbjct: 94 AKLGEDIVITAHVLKQGKTLAFTSVDLT----NKATGKLIAQGRHT 135 >2qwz_A Phenylacetic acid degradation-related protein; YP_613385.1, putative thioesterase, structural genomics, joint center for structural genomics; HET: MSE; 2.15A {Silicibacter SP} Length = 159 Score = 46.6 bits (110), Expect = 2e-06 Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEK 87 + G +T+++ + G V G + + D++ + L F + Sbjct: 50 AKGEITMRLNVQERHLRPGGTVSGPSMFALADVSVYALVLAHLGREALAVTTNASLDFMR 109 Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWT 117 + + ++ K+G+T +++ Sbjct: 110 KPESGRDLLGQARLLKLGRTLAVGDILLFS 139 >3lw3_A HP0420 homologue; hotdog-fold, structural genomics, unknown function; 1.60A {Helicobacter felis} PDB: 3lwg_A Length = 145 Score = 46.6 bits (110), Expect = 3e-06 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G T+ + + D V G+I+ A K + + ++ PI+ Sbjct: 36 GKATVCLTPKEFMLCEDDVVHAGFIVGAASFAALCAL---NKKNSLI-SSMKVNLLAPIE 91 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143 + ++ I TI + + K E ++ +++ Sbjct: 92 IKQEIYFNATITHTSSKKSTIRVEGE--------FMEIKVFEGDFEILVFEKR 136 >1wlu_A PAAI protein, phenylacetic acid degradation protein PAAI; thioesterase, hot DOG fold, structural genomics; 1.45A {Thermus thermophilus HB8} SCOP: d.38.1.5 PDB: 1j1y_A 1wlv_A* 1wm6_A 1wn3_A* 2dsl_A Length = 136 Score = 46.2 bits (109), Expect = 3e-06 Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 11/118 (9%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 + G + + +NL G GG++ + D A + ++ ++ + +P Sbjct: 17 APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALSCRMDYF---RP 73 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNP 146 + V + + + T +V + T + + G+ Sbjct: 74 LGAGARVEARAVEVNLSRRTATYRVEVV--------SEGKLVALFTGTVFRLGGDGDD 123 >1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural genomics, unknown function; 1.94A {Pyrococcus horikoshii} SCOP: d.38.1.5 Length = 131 Score = 43.3 bits (102), Expect = 2e-05 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 12/100 (12%) Query: 44 VNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103 V+ G V GG+ D A V E+ F KP++V D + +I + Sbjct: 40 VDEKGLVHGGFTFGLADYAAM----LAVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIE 95 Query: 104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143 + V+ + + E +++ Sbjct: 96 DLGKKKIVEVKVY------REE--EVVLEGKFYCYVLEKH 127 >2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Rhodococcus SP} SCOP: d.38.1.5 Length = 216 Score = 38.8 bits (90), Expect = 5e-04 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 9/120 (7%) Query: 23 MVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTE 82 +V + S G + + G+V GG +D A+ +T A Sbjct: 102 VVLEGLSDGSVRGTVTLTIPYQGPPGHVHGGVSALLLDHVL-GVANAWGGKAGMT-AQLS 159 Query: 83 LLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142 + +P + + + + ++ + +T D+ A V + V Sbjct: 160 TRYHRPTPLFEPLTLTGKLMSVDGRKITTAGDIR----TADGQVC---VSVEGLFVDKTV 212 >3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae} Length = 167 Score = 37.7 bits (87), Expect = 0.001 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 20/134 (14%) Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIA-------CGIRASQLCKCRVVTKAV 80 H++ + + D + G V+ + + G + L K Sbjct: 32 HTNAFHDFQARVYVADTDFSGVVYHARYLEFFERGRSEFLRDTGFNNTLLASGVEGEKLF 91 Query: 81 -----TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATV 135 E+ F +P Q+ +L+ I T+I ++ + + A V Sbjct: 92 FVVRHMEINFSRPAQIDNLLTIKTRISRLQGARFFMEQYILHGESML--------VTAKV 143 Query: 136 VMVAVDEKGNPKSI 149 + ++E+G P+ + Sbjct: 144 EIALINEEGKPRRL 157 >3f1t_A Uncharacterized protein Q9I3C8_pseae; PAR319A, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Pseudomonas aeruginosa} Length = 148 Score = 37.7 bits (87), Expect = 0.001 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 1/87 (1%) Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVT-ELLFEKPIQ 90 L L G V GG I + +D CGI + + + + + P + Sbjct: 36 TLRLPYSQAIIGNPESGVVHGGAITTLMDTTCGISTVCVLPDFEICPTLDLRIDYMHPAE 95 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWT 117 V+ + + ++ + + Sbjct: 96 PHKDVYGFAECYRVTPNVIFTRGFAYQ 122 >2xem_A DYNE7, TEBC; biosynthetic protein, polyketide biosynthesis, enediyne anti agent, thioesterase; HET: SSV; 2.10A {Micromonospora chersina} PDB: 2xfl_A Length = 150 Score = 35.4 bits (81), Expect = 0.005 Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 13/126 (10%) Query: 34 TLKIQTMPTDVNLDGNVFGGWIMSQIDIA-------CGIRASQLCKCRVVT-KAVTELLF 85 + + NL GNV+ + + F Sbjct: 12 VHRHVVTFDETNLVGNVYFAHYLHWQGHCREHFLADHAPGVMAALADGLALVTVDCHADF 71 Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKG 144 D V + + ++ + + D + + + + Sbjct: 72 YAEGSAFDEVEVRMMLDRLDGHRIAMSFDYV----RVAPGPPTLLAQGRQTVACMRRAGH 127 Query: 145 NPKSIR 150 + + Sbjct: 128 GLEPVE 133 >3dkz_A Thioesterase superfamily protein; Q7W9W5, borpa, PF03061, NESG, BPR208C, structural genomics, PSI-2, protein structure initiative; 2.40A {Bordetella parapertussis} Length = 142 Score = 33.4 bits (76), Expect = 0.019 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 2/87 (2%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G ++ VN G++ GG +MS +D G V F P Sbjct: 29 GTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSP-- 86 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWT 117 + I T+ + G + ++ Sbjct: 87 GRGDLVIETRCLRRGASIAFCEGEIRD 113 >2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5 Length = 157 Score = 31.1 bits (70), Expect = 0.10 Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 50 VFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSV 109 G + +Q + +T A ++ F + ++ + V ++ + K Sbjct: 74 ARGHHLFAQANSLAVAVID---DELALT-ASADIRFTRQVKQGERVVAKAKVTAVEKEKG 129 Query: 110 TIYCDVWT 117 +V + Sbjct: 130 RTVVEVNS 137 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.12 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 17/47 (36%) Query: 86 EKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCE 132 EK Q ++K+ + S+ +Y D + P A ++ T E Sbjct: 18 EK--QA---------LKKL-QASLKLYADD-SAPALA----IKATME 47 >3hdu_A Putative thioesterase; YP_461911.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.50A {Syntrophus aciditrophicus SB} Length = 157 Score = 30.8 bits (69), Expect = 0.13 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 13/98 (13%) Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQV 91 L+ +++ + ++GG I S ID+ G+ A + ++ K + E L Sbjct: 43 KLSFEMRDELIGNAIRRMLYGGVISSAIDMTAGLAAFMGFQEKMSGKPMEEKLAMIGRLS 102 Query: 92 S-------------DLVHIYTQIRKIGKTSVTIYCDVW 116 + + G I ++ Sbjct: 103 TMSLHVEYLRPGLGREFVCTGYNVRTGNKVAVIRTELM 140 >3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* Length = 453 Score = 30.2 bits (68), Expect = 0.20 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 11/108 (10%) Query: 9 NLLLINIITKKEVLMVCQ--MHSSGVLTLKIQ-TMPTDVNLDG---NVFGGWIMSQIDIA 62 N LI K V+ + G + ++Q D ++ ++ G D Sbjct: 131 NADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRD-DVQSIAAQIYEGLSFGVGDAV 189 Query: 63 CGIR--ASQLCKCRVVTKAVTELL--FEKPIQVSDLVHIYTQIRKIGK 106 G+ + V + ++ F P Q L H+ TQI I + Sbjct: 190 IGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRR 237 >1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta dimeric protein with A fold resembling A hotdog, PSI; 1.70A {Shewanella oneidensis mr-1} SCOP: d.38.1.5 Length = 155 Score = 29.3 bits (65), Expect = 0.35 Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 10/88 (11%) Query: 39 TMPTDVNLDGNVFGGWIMSQIDIACGI----RASQLCKCRVVTKAVTELLFEKPIQVSDL 94 + ++NL +F G I + + + + L + A + + P+ + Sbjct: 49 PLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPE 108 Query: 95 VH------IYTQIRKIGKTSVTIYCDVW 116 V + +++ K V + ++ Sbjct: 109 VKVRWPDTNLSPLQRGRKAKVKLEVQLF 136 >3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis} Length = 164 Score = 29.3 bits (65), Expect = 0.40 Identities = 8/98 (8%), Positives = 24/98 (24%), Gaps = 13/98 (13%) Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQV 91 + + ++ + GG + +D+ G+ A + EL Sbjct: 50 EVAINMKPELIGNIHQQILHGGVTATVLDVVGGLTAFAGLVASRDDWTIEELQQRLQTLG 109 Query: 92 S-------------DLVHIYTQIRKIGKTSVTIYCDVW 116 + + + + G ++ Sbjct: 110 TIDMRVDYLRPGRGQIFTGTGSVIRAGNRVSVCRMELH 147 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.8 bits (64), Expect = 0.54 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 40/88 (45%) Query: 1 MVDISKNINLLLINIITKKEV--LMVCQMHSS-------------GVLTLKIQTMPTDVN 45 + +S +I+ +++ I + V Q ++ GVLT + N Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR--------N 519 Query: 46 LDGNVFGGWIMSQIDIACGIR---ASQL 70 DG G+R A L Sbjct: 520 KDG--------------TGVRVIVAGTL 533 >2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1, ethanolamine ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes str} Length = 455 Score = 25.8 bits (57), Expect = 4.4 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 31 GVLTLKIQ-TMPTDVNLDG---NVFGGWIMSQIDIACGIR--ASQLCKCRVVTKAVTELL 84 G + ++Q PTD + DG ++ G D G+ + E Sbjct: 156 GTFSARLQPNHPTD-DPDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEEFR 214 Query: 85 --FEKPIQVSDLVHIYTQIRKIGK 106 ++ P Q L H+ TQ+ + + Sbjct: 215 SKWDVPTQTCVLAHVKTQMEAMRR 238 >2ess_A Acyl-ACP thioesterase; NP_810988.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.38.1.8 d.38.1.8 Length = 248 Score = 25.5 bits (55), Expect = 5.9 Identities = 5/53 (9%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 59 IDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTI 111 I+ + +L + + + + E+ + D + + + V + Sbjct: 182 IEHILDLFPIELYQTKRIRRF--EMAYVAESYFGDELSFFCDEVSENEFHVEV 232 >3bnv_A CJ0977; virulence factor, hot-DOG fold, flagella, unknown function; HET: MSE; 2.60A {Campylobacter jejuni} Length = 152 Score = 24.9 bits (54), Expect = 7.6 Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 11/99 (11%) Query: 45 NLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI 104 + G +F +I + + + K V + L + Sbjct: 60 DDQGLIFDAFIFAAANYVAQA---SINKEFSVIIGSKCFFYAPLKLGDVLELEAHALFDE 116 Query: 105 GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143 + K E T+ +V+ DE Sbjct: 117 TSKKRDVKVVGH--------VKEIKMFEGTIQVVSTDEH 147 >2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Length = 1052 Score = 24.7 bits (53), Expect = 7.8 Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 75 VVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQK 129 V V +++ ++ + +L +I ++ G ++T+ + T P A V K Sbjct: 56 TVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNK 110 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.134 0.397 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,216,386 Number of extensions: 48158 Number of successful extensions: 149 Number of sequences better than 10.0: 1 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 41 Length of query: 152 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 68 Effective length of database: 3,656,734 Effective search space: 248657912 Effective search space used: 248657912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.1 bits)