RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase HI0827 {Haemophilus influenzae [TaxId: 727]} Length = 142 Score = 98.5 bits (245), Expect = 2e-22 Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 1/123 (0%) Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEK 87 S GVL L+ MP+D N +G++FGGWIMSQ+D+ I A ++ RVVT AV + F K Sbjct: 2 QSKGVLLLRTLAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNFIK 61 Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWTC-PRNASSDVLQKTCEATVVMVAVDEKGNP 146 PI V D+V Y Q K+G++S+ I +VW + +A VAVD G Sbjct: 62 PISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDAVFTFVAVDNNGRS 121 Query: 147 KSI 149 ++I Sbjct: 122 RTI 124 >d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]} Length = 116 Score = 93.5 bits (232), Expect = 6e-21 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 33 LTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVS 92 +T+ P N G +FGG ++ + A + AS+ C VV + + F + I++ Sbjct: 2 VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYCGKLVVLASSERIDFARAIEIG 61 Query: 93 DLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149 ++V + ++G++S++I +W+ + T MVAVD+ P +I Sbjct: 62 EIVEAQAHVERVGRSSMSIQTKLWSENL--LTGERHITATGHFTMVAVDKDHRPATI 116 >d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus halodurans [TaxId: 86665]} Length = 155 Score = 92.4 bits (229), Expect = 2e-20 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%) Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99 +P D N G +FGG +++ ID + A + VVT ++ + F+ V D + + Sbjct: 18 LPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEG 77 Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150 + G+TS+ +Y V + N + T E+ + MVAVDE G PK + Sbjct: 78 FVTHTGRTSMEVYVRVHSN--NLLTGERTLTTESFLTMVAVDESGKPKPVP 126 >d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]} Length = 135 Score = 91.6 bits (227), Expect = 3e-20 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 27 MHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFE 86 H + + I P D N G +FGG ++ +D I A++ + VT + + F Sbjct: 4 QHGATTRLIDI-VFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTASCERIDFR 62 Query: 87 KPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNP 146 +P ++ +V + K G+ S+T+ ++ MVA+ E + Sbjct: 63 QPARIGHIVEFTARPVKAGRRSLTVEVEMVAETII--GRQQHTCTRGIFHMVAIPEGEDA 120 Query: 147 KSI 149 S Sbjct: 121 ASY 123 >d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]} Length = 164 Score = 87.8 bits (217), Expect = 4e-19 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 + + + PTD+N +FGG I+S++D+ I AS+ + VT ++ + F P Sbjct: 6 NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHP 65 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148 ++ SD V + + G+TS+ ++ V + + + V VA+ ++ NP Sbjct: 66 VRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKR--IAATSFVTFVALSKENNPVP 123 Query: 149 IR 150 + Sbjct: 124 VP 125 >d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309 {Caulobacter crescentus [TaxId: 155892]} Length = 142 Score = 50.0 bits (119), Expect = 8e-08 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 1/86 (1%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G L + N GN GG +MS D+A G S VT + F + Sbjct: 30 GQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSWVTVRLM-CDFLSGAK 88 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVW 116 + D V ++ T+ +W Sbjct: 89 LGDWVEGEGELISEEDMLFTVRGRIW 114 >d1ixla_ d.38.1.5 (A:) Hypothetical protein PH1136 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 130 Score = 44.6 bits (105), Expect = 3e-06 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 12/100 (12%) Query: 44 VNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103 V+ G V GG+ D A + V E+ F KP++V D + +I + Sbjct: 40 VDEKGLVHGGFTFGLADYAAMLA----VNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIE 95 Query: 104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143 + V+ + E +++ Sbjct: 96 DLGKKKIVEVKVY--------REEEVVLEGKFYCYVLEKH 127 >d1wlua1 d.38.1.5 (A:2-117) Phenylacetic acid degradation protein PaaI {Thermus thermophilus [TaxId: 274]} Length = 116 Score = 43.1 bits (101), Expect = 1e-05 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 3/88 (3%) Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88 + G + + +NL G GG++ + D A + ++ ++ + + +P Sbjct: 16 APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALSCRMD---YFRP 72 Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVW 116 + V + + + T +V Sbjct: 73 LGAGARVEARAVEVNLSRRTATYRVEVV 100 >d2fs2a1 d.38.1.5 (A:1-131) Phenylacetic acid degradation protein PaaI {Escherichia coli [TaxId: 562]} Length = 131 Score = 41.6 bits (97), Expect = 3e-05 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 2/87 (2%) Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G + + +N + GG + S D A + + + + F +P Sbjct: 32 GFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACN--SQGLAAVASACTIDFLRPGF 89 Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWT 117 D + Q+R GK + ++ Sbjct: 90 AGDTLTATAQVRHQGKQTGVYDIEIVN 116 >d1bm8a_ d.34.1.1 (A:) DNA-binding domain of Mlu1-box binding protein MBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Score = 24.7 bits (54), Expect = 3.7 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 52 GGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90 G IM + + A+ + K KA + EK + Sbjct: 19 TGSIMKRKKDDW-VNATHILKAANFAKAKRTRILEKEVL 56 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.134 0.397 Gapped Lambda K H 0.267 0.0672 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 532,935 Number of extensions: 21491 Number of successful extensions: 57 Number of sequences better than 10.0: 1 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 14 Length of query: 152 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 74 Effective length of database: 1,336,656 Effective search space: 98912544 Effective search space used: 98912544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (22.8 bits)