BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus
Liberibacter asiaticus str. psy62]
(152 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 152
Score = 310 bits (794), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MVDISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQID 60
MVDISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQID
Sbjct: 1 MVDISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQID 60
Query: 61 IACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPR 120
IACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPR
Sbjct: 61 IACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPR 120
Query: 121 NASSDVLQKTCEATVVMVAVDEKGNPKSIRTE 152
NASSDVLQKTCEATVVMVAVDEKGNPKSIRTE
Sbjct: 121 NASSDVLQKTCEATVVMVAVDEKGNPKSIRTE 152
>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 23.5 bits (49), Expect = 1.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 NIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFG 52
NI + L++ ++ SSG LK+ T+ V+ DG + G
Sbjct: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 673
Score = 22.3 bits (46), Expect = 3.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 62 ACGIRASQLCKCRVVTKAVTELLFEK 87
AC I +S+ RVV+ EL FE+
Sbjct: 576 ACEILSSRNISTRVVSVPCFELFFEQ 601
>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 324
Score = 21.6 bits (44), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQI 59
+ LK+Q + + ++L ++ GG I Q+
Sbjct: 137 AIVLKVQGISSGIDLAASIHGGLICYQM 164
>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 325
Score = 21.2 bits (43), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 119 PRNASSDVLQKTCE 132
P A+S ++QK CE
Sbjct: 253 PHQANSRIIQKVCE 266
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,700
Number of Sequences: 1233
Number of extensions: 2858
Number of successful extensions: 8
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 152
length of database: 328,796
effective HSP length: 67
effective length of query: 85
effective length of database: 246,185
effective search space: 20925725
effective search space used: 20925725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)