Query gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 279
No_of_seqs 133 out of 2082
Neff 7.7
Searched_HMMs 33803
Date Wed Jun 1 20:56:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3c02_A Aquaglyceroporin; memb 43.3 16 0.00048 14.6 17.0 36 86-121 74-109 (258)
2 >3d9s_A Aquaporin-5, AQP-5; aq 32.3 25 0.00073 13.6 11.1 35 87-121 75-109 (266)
3 >1col_A Colicin A; antibacteri 22.3 38 0.0011 12.6 3.4 29 237-265 174-202 (204)
4 >3cn5_A Aquaporin; membrane pr 17.6 49 0.0015 12.0 16.3 36 86-121 128-163 (304)
5 >2b6o_A Aquaporin-0, lens fibe 17.5 49 0.0015 12.0 10.2 36 86-121 72-107 (263)
6 >2cfq_A Lactose permease; tran 15.1 57 0.0017 11.7 9.4 46 97-142 141-186 (417)
7 >2gfp_A EMRD, multidrug resist 11.9 71 0.0021 11.1 13.2 42 102-143 132-173 (375)
8 >2zz9_A Aquaporin-4; water tra 9.4 88 0.0026 10.6 7.9 35 87-121 80-114 (301)
9 >1t0f_A Transposon TN7 transpo 9.2 61 0.0018 11.5 -0.6 14 86-99 76-89 (94)
10 >2b2h_A AMT-1, ammonium transp 8.9 92 0.0027 10.5 8.0 109 62-173 211-319 (369)
No 1
>>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} (A:)
Probab=43.29 E-value=16 Score=14.59 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 578875288553566654567646999997764036
Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
+....-.|+++|+........-+.|+.+|+.+...+
T Consensus 74 Tla~~~~g~~~~~~~~~yi~aQ~lGa~lg~~~~~~~ 109 (258)
T 3c02_A 74 SIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL 109 (258)
T ss_dssp HHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 999998399973206501089888999999999997
No 2
>>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} (A:)
Probab=32.25 E-value=25 Score=13.60 Aligned_cols=35 Identities=6% Similarity=-0.018 Sum_probs=28.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78875288553566654567646999997764036
Q gi|254780993|r 87 MEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 87 ~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
....-.|.++|+......+.=+.|+.+|+.+...+
T Consensus 75 ~~~~~~g~~~~~~~~~yi~aQ~~Ga~~~~~~~~~~ 109 (266)
T 3d9s_A 75 LALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99885699868899999987615999999999986
No 3
>>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} (A:)
Probab=22.32 E-value=38 Score=12.59 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999999999983089999999
Q gi|254780993|r 237 VLIILPISILITPLATKLSYMIGKKYLTI 265 (279)
Q Consensus 237 ~~~i~~~s~~ga~iGa~l~~~l~~~~lk~ 265 (279)
...+.+.++.++++..++..++++..+|.
T Consensus 174 ia~iil~a~v~s~Idd~~ve~~N~~li~~ 202 (204)
T 1col_A 174 IAGILLAAVVGALIDDKFADALNNEIIRP 202 (204)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999985589999989875678
No 4
>>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A (A:)
Probab=17.55 E-value=49 Score=12.01 Aligned_cols=36 Identities=0% Similarity=-0.063 Sum_probs=30.5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 578875288553566654567646999997764036
Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
+....-.|.++|+......+.=+.|+.+|+.+...+
T Consensus 128 Tla~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~ 163 (304)
T 3cn5_A 128 TFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 699997067643247755248888999999999723
No 5
>>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interactions, membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} (A:)
Probab=17.47 E-value=49 Score=12.00 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=28.8
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 578875288553566654567646999997764036
Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
+....-.|.++|+........=+.|+.+|+.+...+
T Consensus 72 Tl~~~l~g~~~~~~~~~yi~aQ~~Ga~~~~~~~~~~ 107 (263)
T 2b6o_A 72 TFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSV 107 (263)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 089884147889999999998745999999999997
No 6
>>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} (A:)
Probab=15.07 E-value=57 Score=11.66 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3566654567646999997764036631022358999999999972
Q gi|254780993|r 97 MKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILML 142 (279)
Q Consensus 97 ~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~ 142 (279)
-........+..+|..++..+.................+...+..+
T Consensus 141 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHE
T ss_conf 6666652133344543234332346642112677777776544210
No 7
>>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} (A:)
Probab=11.90 E-value=71 Score=11.14 Aligned_cols=42 Identities=7% Similarity=0.080 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 545676469999977640366310223589999999999721
Q gi|254780993|r 102 DWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279)
Q Consensus 102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279)
....+..+|..+|.++.++.+-++.-...+...........+
T Consensus 132 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 123465446543444323567520346778889999999999
No 8
>>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A (A:)
Probab=9.40 E-value=88 Score=10.64 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=28.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78875288553566654567646999997764036
Q gi|254780993|r 87 MEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 87 ~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
......+.++|+......+.=+.|+.+|+.+...+
T Consensus 80 la~~~~g~~~~~~~~~yi~aQ~lGa~~ga~l~~~~ 114 (301)
T 2zz9_A 80 VAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 114 (301)
T ss_dssp HHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99986589878888999999750688878888611
No 9
>>1t0f_A Transposon TN7 transposition protein TNSA; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli} (A:77-170)
Probab=9.24 E-value=61 Score=11.51 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=8.2
Q ss_pred HHHHHHCCCCCHHH
Q ss_conf 57887528855356
Q gi|254780993|r 86 FMEHRRHGTINMKI 99 (279)
Q Consensus 86 ~~~~~k~~~i~~~~ 99 (279)
-+.||++++++|..
T Consensus 76 Er~YW~~~gI~w~i 89 (94)
T 1t0f_A 76 ERRYWQQKQIPWFI 89 (94)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999974981899
No 10
>>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A (A:1-369)
Probab=8.95 E-value=92 Score=10.54 Aligned_cols=109 Identities=7% Similarity=-0.091 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 82366899999899999999677657887528855356665456764699999776403663102235899999999997
Q gi|254780993|r 62 DDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILM 141 (279)
Q Consensus 62 ~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~ 141 (279)
..+.....++-|.+.+...+.......++++|+.|......=.+.+.++.-.++-..+-. ...+--+.+-.+...+.+.
T Consensus 211 ~~~~~~~~~~~tt~~aa~~~~~~~~~~~~~~gK~~~~~~~ng~LaGlVait~~~~~v~p~-~a~iiG~iag~i~~~~~~~ 289 (369)
T 2b2h_A 211 AANDVAINAVVVTNTSAAVAGFVWMVIGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVK-GAIVIGLVAGIVCYLAMDF 289 (369)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTTTTTCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCH-HHHHHHHHHHHHHHHHHHH
T ss_conf 203421013322102577788875200023666768887655554445020241246757-9999999887656778888
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 21578774333323401332115676676665
Q gi|254780993|r 142 LKRDRLYCERKFPDNYVKYIWGMVTGFLSGAL 173 (279)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~ 173 (279)
..|.+.++.. ..-..-...|.......+++
T Consensus 290 ~~~~~idD~~--~v~~vHg~~G~~G~i~~g~f 319 (369)
T 2b2h_A 290 RIKKKIDESL--DAWAIHGIGGLWGSVAVGIL 319 (369)
T ss_dssp HHHTTCCCTT--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCC--CCCCCCCCCCHHHHHHHEEE
T ss_conf 7753356533--44430443214542453000
Done!