Query         gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 279
No_of_seqs    133 out of 2082
Neff          7.7 
Searched_HMMs 13730
Date          Wed Jun  1 11:11:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1fx8a_ f.19.1.1 (A:) Glycerol  24.4      14   0.001   12.8  17.5   34   86-119    67-100 (254)
  2 d1rc2a_ f.19.1.1 (A:) Aquapori  23.9      14   0.001   12.8   6.0   33   89-121    70-102 (231)
  3 d1cola_ f.1.1.1 (A:) Colicin A  18.5      19  0.0014   12.1   3.4   56  196-263   141-196 (197)
  4 d1j4na_ f.19.1.1 (A:) Aquapori   7.1      46  0.0033   10.1   8.1   33   88-120    84-116 (249)
  5 d1rh1a2 f.1.1.1 (A:313-511) Co   5.3      65  0.0047    9.3   1.5   25  239-263   174-198 (199)
  6 d2yvxa3 f.57.1.1 (A:276-448) M   5.1      68   0.005    9.1  10.1   33  181-215   132-165 (173)
  7 d2pila_ d.24.1.1 (A:) Pilin Gc   4.8      75  0.0054    8.9   3.7   18   19-36      3-20  (158)
  8 d1t5ja_ a.209.1.1 (A:) Hypothe   4.4      83  0.0061    8.7   2.6   25  242-266   257-282 (301)
  9 d1pv7a_ f.38.1.2 (A:) Lactose    4.2      88  0.0064    8.6  15.8   48   96-143   140-187 (417)
 10 d2iuba2 f.17.3.1 (A:286-349) M   3.9      95  0.0069    8.4   2.8   28   16-43      2-29  (64)

No 1  
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=24.42  E-value=14  Score=12.82  Aligned_cols=34  Identities=3%  Similarity=0.027  Sum_probs=28.3

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788752885535666545676469999977640
Q gi|254780993|r   86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMIS  119 (279)
Q Consensus        86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~  119 (279)
                      +...+-.|+++|+........-+.|+.+|+.+..
T Consensus        67 Tla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~  100 (254)
T d1fx8a_          67 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVY  100 (254)
T ss_dssp             HHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999981788689868999999999999999999


No 2  
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=23.92  E-value=14  Score=12.77  Aligned_cols=33  Identities=9%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             875288553566654567646999997764036
Q gi|254780993|r   89 HRRHGTINMKILKDWIFVLPITTVVTSLMISHV  121 (279)
Q Consensus        89 ~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i  121 (279)
                      .+-.|+++|+........=+.|+.+|+.+...+
T Consensus        70 ~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i  102 (231)
T d1rc2a_          70 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI  102 (231)
T ss_dssp             HHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             873689727879999999999999999999999


No 3  
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=18.47  E-value=19  Score=12.13  Aligned_cols=56  Identities=16%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             46667888666778999998538764357451001899999999999999999999999830899999
Q gi|254780993|r  196 TATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYL  263 (279)
Q Consensus       196 vgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~l  263 (279)
                      ++|+.+..++....+.+.... |.     |.-.+|      .+.+.+.+++++.+...+..++++..+
T Consensus       141 ~At~va~~~fs~~~~~~~~~~-g~-----~~~~iG------I~g~li~~~v~alIdd~~~~~iN~~li  196 (197)
T d1cola_         141 IASSVALGIFSATLGAYALSL-GV-----PAIAVG------IAGILLAAVVGALIDDKFADALNNEII  196 (197)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHC-CS-----CHHHHH------HHHHHHHHHHHHHHCTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CC-----CCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999988899870-36-----432999------999999999999866899999999870


No 4  
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.09  E-value=46  Score=10.07  Aligned_cols=33  Identities=12%  Similarity=0.073  Sum_probs=27.0

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             887528855356665456764699999776403
Q gi|254780993|r   88 EHRRHGTINMKILKDWIFVLPITTVVTSLMISH  120 (279)
Q Consensus        88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~  120 (279)
                      ..+..|+++|+........-+.|+.+|+.+...
T Consensus        84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~  116 (249)
T d1j4na_          84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSG  116 (249)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHEEEEEEHHHHHHHHHHHHHEE
T ss_conf             998626532655211100987778887753000


No 5  
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.33  E-value=65  Score=9.26  Aligned_cols=25  Identities=8%  Similarity=0.038  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             9999999999999999830899999
Q gi|254780993|r  239 IILPISILITPLATKLSYMIGKKYL  263 (279)
Q Consensus       239 ~i~~~s~~ga~iGa~l~~~l~~~~l  263 (279)
                      .+.+.+++++.+..++..++++..+
T Consensus       174 giii~~~v~alIdd~~v~k~N~~ii  198 (199)
T d1rh1a2         174 GVVIAGAIGAFIDDKFVDELNHKII  198 (199)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf             9999999999837799999999870


No 6  
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.13  E-value=68  Score=9.14  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=21.3

Q ss_pred             HHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999-984898446346667888666778999998
Q gi|254780993|r  181 TNLLM-LFYGASIYKATATSAGVSALIAFPALLVRI  215 (279)
Q Consensus       181 ~vp~l-~~~g~~~~~avgTS~~~~~~~a~~g~i~~~  215 (279)
                      ..|++ +++|.|+..+  ++-.+.....+.|...|+
T Consensus       132 ~lPlll~klg~DPA~a--S~P~itti~Di~g~~iyf  165 (173)
T d2yvxa3         132 MLPFLLRRLGVDPALV--SNPLVATLSDVTGLLIYL  165 (173)
T ss_dssp             HHHHHHHHTSCCGGGS--CSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf             9999999829991465--300999999999999999


No 7  
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.76  E-value=75  Score=8.92  Aligned_cols=18  Identities=11%  Similarity=0.427  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             799999999999999999
Q gi|254780993|r   19 VVDYICLIIVASFLSGTL   36 (279)
Q Consensus        19 ~i~~i~~l~~~g~~~G~~   36 (279)
                      ++|.++.+.++|+++++.
T Consensus         3 LIELlVViaIIgILaaia   20 (158)
T d2pila_           3 LIELMIVIAIVGILAAVA   20 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             149999999999999999


No 8  
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.37  E-value=83  Score=8.67  Aligned_cols=25  Identities=12%  Similarity=-0.077  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHH-HCCCHHHHHHH
Q ss_conf             99999999999998-30899999999
Q gi|254780993|r  242 PISILITPLATKLS-YMIGKKYLTIG  266 (279)
Q Consensus       242 ~~s~~ga~iGa~l~-~~l~~~~lk~~  266 (279)
                      .+++.|+.+|+... ..+|+++++.+
T Consensus       257 ~aai~Gal~GA~~G~~~IP~~w~~~l  282 (301)
T d1t5ja_         257 LASMYGAMAGAYYGFKNIPKEWIDGL  282 (301)
T ss_dssp             HHHHHHHHHHHHHCGGGSCHHHHHTS
T ss_pred             HHHHHHHHHHHHHCHHCCCHHHHHHH
T ss_conf             99999999999858201899999972


No 9  
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.20  E-value=88  Score=8.55  Aligned_cols=48  Identities=6%  Similarity=-0.054  Sum_probs=25.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             535666545676469999977640366310223589999999999721
Q gi|254780993|r   96 NMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus        96 ~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      ..........+...+..++..+....+............+......+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (417)
T d1pv7a_         140 FGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFA  187 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             788765403554455300012334566532110034899999999998


No 10 
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.93  E-value=95  Score=8.37  Aligned_cols=28  Identities=14%  Similarity=0.350  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             4317999999999999999999998402
Q gi|254780993|r   16 KDCVVDYICLIIVASFLSGTLSGLFGVG   43 (279)
Q Consensus        16 ~~~~i~~i~~l~~~g~~~G~~~gl~G~G   43 (279)
                      +||.+..+-.+...-+...+++|++|+-
T Consensus         2 ~N~~mk~lT~it~iflP~t~i~gifGMN   29 (64)
T d2iuba2           2 TNEVMKVLTIIATIFMPLTFIAGIYGMN   29 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             2089999999999999999999663167


Done!