Query gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 279 No_of_seqs 133 out of 2082 Neff 7.7 Searched_HMMs 13730 Date Wed Jun 1 11:11:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1fx8a_ f.19.1.1 (A:) Glycerol 24.4 14 0.001 12.8 17.5 34 86-119 67-100 (254) 2 d1rc2a_ f.19.1.1 (A:) Aquapori 23.9 14 0.001 12.8 6.0 33 89-121 70-102 (231) 3 d1cola_ f.1.1.1 (A:) Colicin A 18.5 19 0.0014 12.1 3.4 56 196-263 141-196 (197) 4 d1j4na_ f.19.1.1 (A:) Aquapori 7.1 46 0.0033 10.1 8.1 33 88-120 84-116 (249) 5 d1rh1a2 f.1.1.1 (A:313-511) Co 5.3 65 0.0047 9.3 1.5 25 239-263 174-198 (199) 6 d2yvxa3 f.57.1.1 (A:276-448) M 5.1 68 0.005 9.1 10.1 33 181-215 132-165 (173) 7 d2pila_ d.24.1.1 (A:) Pilin Gc 4.8 75 0.0054 8.9 3.7 18 19-36 3-20 (158) 8 d1t5ja_ a.209.1.1 (A:) Hypothe 4.4 83 0.0061 8.7 2.6 25 242-266 257-282 (301) 9 d1pv7a_ f.38.1.2 (A:) Lactose 4.2 88 0.0064 8.6 15.8 48 96-143 140-187 (417) 10 d2iuba2 f.17.3.1 (A:286-349) M 3.9 95 0.0069 8.4 2.8 28 16-43 2-29 (64) No 1 >d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Probab=24.42 E-value=14 Score=12.82 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=28.3 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788752885535666545676469999977640 Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMIS 119 (279) Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~ 119 (279) +...+-.|+++|+........-+.|+.+|+.+.. T Consensus 67 Tla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~ 100 (254) T d1fx8a_ 67 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVY 100 (254) T ss_dssp HHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999981788689868999999999999999999 No 2 >d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Probab=23.92 E-value=14 Score=12.77 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=27.2 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 875288553566654567646999997764036 Q gi|254780993|r 89 HRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279) Q Consensus 89 ~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279) .+-.|+++|+........=+.|+.+|+.+...+ T Consensus 70 ~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i 102 (231) T d1rc2a_ 70 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 102 (231) T ss_dssp HHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 873689727879999999999999999999999 No 3 >d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]} Probab=18.47 E-value=19 Score=12.13 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 46667888666778999998538764357451001899999999999999999999999830899999 Q gi|254780993|r 196 TATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYL 263 (279) Q Consensus 196 vgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~l 263 (279) ++|+.+..++....+.+.... |. |.-.+| .+.+.+.+++++.+...+..++++..+ T Consensus 141 ~At~va~~~fs~~~~~~~~~~-g~-----~~~~iG------I~g~li~~~v~alIdd~~~~~iN~~li 196 (197) T d1cola_ 141 IASSVALGIFSATLGAYALSL-GV-----PAIAVG------IAGILLAAVVGALIDDKFADALNNEII 196 (197) T ss_dssp CCHHHHHHHHHHHHHHHHHHC-CS-----CHHHHH------HHHHHHHHHHHHHHCTHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHC-CC-----CCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999999988899870-36-----432999------999999999999866899999999870 No 4 >d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Probab=7.09 E-value=46 Score=10.07 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=27.0 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 887528855356665456764699999776403 Q gi|254780993|r 88 EHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 (279) Q Consensus 88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~ 120 (279) ..+..|+++|+........-+.|+.+|+.+... T Consensus 84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~ 116 (249) T d1j4na_ 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSG 116 (249) T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHEEEEEEHHHHHHHHHHHHHEE T ss_conf 998626532655211100987778887753000 No 5 >d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]} Probab=5.33 E-value=65 Score=9.26 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 9999999999999999830899999 Q gi|254780993|r 239 IILPISILITPLATKLSYMIGKKYL 263 (279) Q Consensus 239 ~i~~~s~~ga~iGa~l~~~l~~~~l 263 (279) .+.+.+++++.+..++..++++..+ T Consensus 174 giii~~~v~alIdd~~v~k~N~~ii 198 (199) T d1rh1a2 174 GVVIAGAIGAFIDDKFVDELNHKII 198 (199) T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHTC T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 9999999999837799999999870 No 6 >d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]} Probab=5.13 E-value=68 Score=9.14 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=21.3 Q ss_pred HHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999-984898446346667888666778999998 Q gi|254780993|r 181 TNLLM-LFYGASIYKATATSAGVSALIAFPALLVRI 215 (279) Q Consensus 181 ~vp~l-~~~g~~~~~avgTS~~~~~~~a~~g~i~~~ 215 (279) ..|++ +++|.|+..+ ++-.+.....+.|...|+ T Consensus 132 ~lPlll~klg~DPA~a--S~P~itti~Di~g~~iyf 165 (173) T d2yvxa3 132 MLPFLLRRLGVDPALV--SNPLVATLSDVTGLLIYL 165 (173) T ss_dssp HHHHHHHHTSCCGGGS--CSTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHH T ss_conf 9999999829991465--300999999999999999 No 7 >d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]} Probab=4.76 E-value=75 Score=8.92 Aligned_cols=18 Identities=11% Similarity=0.427 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 799999999999999999 Q gi|254780993|r 19 VVDYICLIIVASFLSGTL 36 (279) Q Consensus 19 ~i~~i~~l~~~g~~~G~~ 36 (279) ++|.++.+.++|+++++. T Consensus 3 LIELlVViaIIgILaaia 20 (158) T d2pila_ 3 LIELMIVIAIVGILAAVA 20 (158) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 149999999999999999 No 8 >d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=4.37 E-value=83 Score=8.67 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHH Q ss_conf 99999999999998-30899999999 Q gi|254780993|r 242 PISILITPLATKLS-YMIGKKYLTIG 266 (279) Q Consensus 242 ~~s~~ga~iGa~l~-~~l~~~~lk~~ 266 (279) .+++.|+.+|+... ..+|+++++.+ T Consensus 257 ~aai~Gal~GA~~G~~~IP~~w~~~l 282 (301) T d1t5ja_ 257 LASMYGAMAGAYYGFKNIPKEWIDGL 282 (301) T ss_dssp HHHHHHHHHHHHHCGGGSCHHHHHTS T ss_pred HHHHHHHHHHHHHCHHCCCHHHHHHH T ss_conf 99999999999858201899999972 No 9 >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Probab=4.20 E-value=88 Score=8.55 Aligned_cols=48 Identities=6% Similarity=-0.054 Sum_probs=25.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 535666545676469999977640366310223589999999999721 Q gi|254780993|r 96 NMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 96 ~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) ..........+...+..++..+....+............+......+. T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (417) T d1pv7a_ 140 FGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFA 187 (417) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSS T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 788765403554455300012334566532110034899999999998 No 10 >d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Probab=3.93 E-value=95 Score=8.37 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 4317999999999999999999998402 Q gi|254780993|r 16 KDCVVDYICLIIVASFLSGTLSGLFGVG 43 (279) Q Consensus 16 ~~~~i~~i~~l~~~g~~~G~~~gl~G~G 43 (279) +||.+..+-.+...-+...+++|++|+- T Consensus 2 ~N~~mk~lT~it~iflP~t~i~gifGMN 29 (64) T d2iuba2 2 TNEVMKVLTIIATIFMPLTFIAGIYGMN 29 (64) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 2089999999999999999999663167 Done!