RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] (279 letters) >gnl|CDD|145216 pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81. Length = 236 Score = 94.2 bits (235), Expect = 3e-20 Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 23/250 (9%) Query: 26 IIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMS 85 +++A L+G L+GL G GGGL+ VP+L HVA+GTSL + TS+ Sbjct: 1 LLLAGLLAGFLAGLTGFGGGLIAVPLLLLLLGPP--------HVAVGTSLLAVLVTSLSG 52 Query: 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILML--K 143 + HRR G ++ ++ + ++ +L++ + + L F + LL +LML Sbjct: 53 ALAHRRRGNVDWRLALLLALGGLLGALLGALLLLLLPGAVLKLLFGVLLLLAALLMLLRP 112 Query: 144 RDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTN-LLMLFYGASIYKATATSAGV 202 R R+ P + G + GFLSG G+GGG L+L G + KA ATS V Sbjct: 113 RLAAAASRRPPGALALLLAGGLIGFLSGLFGIGGGFLLVPALLLLLGLPLKKAVATSLLV 172 Query: 203 SALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKY 262 L + ALL LG V+ +L++LP ++L L +L+ + + Sbjct: 173 ILLSSLAALLGYAL------------LGLVDWPLLLLLLPGALLGALLGARLARRLPPRL 220 Query: 263 LTIGFSMIMF 272 L F++++ Sbjct: 221 LRRLFAVLLL 230 Score = 43.3 bits (103), Expect = 7e-05 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 25 LIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVM 84 +++A L G LSGLFG+GGG ++VP L L + A+ TSL VI +S+ Sbjct: 127 ALLLAGGLIGFLSGLFGIGGGFLLVPALLLLLGLP-------LKKAVATSLLVILLSSLA 179 Query: 85 SFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILM 141 + + + G ++ +L + + ++ + + + L + FA+ LL+G+ + Sbjct: 180 ALLGYALLGLVDWPLLLLLLPGALLGALLGARLARRLPPRLLRRLFAVLLLLVGLKL 236 >gnl|CDD|31074 COG0730, COG0730, Predicted permeases [General function prediction only]. Length = 258 Score = 58.9 bits (142), Expect = 2e-09 Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 24/261 (9%) Query: 21 DYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAP 80 + L+ + L+G +SGL G GGGL+ VP L + A+GTSL + Sbjct: 5 MTLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLG--------LPPAAALGTSLLAVLF 56 Query: 81 TSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGIL 140 TS+ S + + + G ++ K+ + I + +L+ + L F + LL+ + Sbjct: 57 TSLSSALAYLKRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALY 116 Query: 141 MLKRDRLYCERKFPDN------YVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYK 194 ML RL + + G + GFLSG GVGGG +L K Sbjct: 117 MLLGPRLAKAEDRAARLRPLLFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLK 176 Query: 195 ATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKL 254 ++ L ++LG V+ L++ SIL L +L Sbjct: 177 LAVATSLAIILNTASNGAALY----------LFALGAVDWPLALLLAVGSILGAYLGARL 226 Query: 255 SYMIGKKYLTIGFSMIMFTTS 275 + + K L F++++ + Sbjct: 227 ARRLSPKVLRRLFALVLLAVA 247 >gnl|CDD|31682 COG1493, HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]. Length = 308 Score = 28.3 bits (63), Expect = 2.7 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 36 LSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTI 95 ++G G G + + ++ + +L+ DD++ + G L AP + +E R G I Sbjct: 150 ITGPSGAGKSELALELIKRGHRLVA-DDAVEIFREGGNRLVGRAPELLAGLLEIRGLGII 208 Query: 96 NMKILKDWIFVLPITTV 112 N+ + V + Sbjct: 209 NVMTVFGAGSVRAEKPI 225 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.145 0.444 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,480,356 Number of extensions: 196210 Number of successful extensions: 948 Number of sequences better than 10.0: 1 Number of HSP's gapped: 930 Number of HSP's successfully gapped: 124 Length of query: 279 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 186 Effective length of database: 4,254,100 Effective search space: 791262600 Effective search space used: 791262600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 57 (25.7 bits)