RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780993|ref|YP_003065406.1| hypothetical protein
CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
         (279 letters)



>gnl|CDD|145216 pfam01925, TauE, Sulfite exporter TauE/SafE.  This is a family of
           integral membrane proteins where the alignment appears
           to contain two duplicated modules of three transmembrane
           helices. The proteins are involved in the transport of
           anions across the cytoplasmic membrane during taurine
           metabolism as an exporter of sulfoacetate. This family
           used to be known as DUF81.
          Length = 236

 Score = 94.2 bits (235), Expect = 3e-20
 Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 23/250 (9%)

Query: 26  IIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMS 85
           +++A  L+G L+GL G GGGL+ VP+L               HVA+GTSL  +  TS+  
Sbjct: 1   LLLAGLLAGFLAGLTGFGGGLIAVPLLLLLLGPP--------HVAVGTSLLAVLVTSLSG 52

Query: 86  FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILML--K 143
            + HRR G ++ ++         +  ++ +L++  +  + L   F +  LL  +LML   
Sbjct: 53  ALAHRRRGNVDWRLALLLALGGLLGALLGALLLLLLPGAVLKLLFGVLLLLAALLMLLRP 112

Query: 144 RDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTN-LLMLFYGASIYKATATSAGV 202
           R      R+ P      + G + GFLSG  G+GGG      L+L  G  + KA ATS  V
Sbjct: 113 RLAAAASRRPPGALALLLAGGLIGFLSGLFGIGGGFLLVPALLLLLGLPLKKAVATSLLV 172

Query: 203 SALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKY 262
             L +  ALL                LG V+   +L++LP ++L   L  +L+  +  + 
Sbjct: 173 ILLSSLAALLGYAL------------LGLVDWPLLLLLLPGALLGALLGARLARRLPPRL 220

Query: 263 LTIGFSMIMF 272
           L   F++++ 
Sbjct: 221 LRRLFAVLLL 230



 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 25  LIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVM 84
            +++A  L G LSGLFG+GGG ++VP L     L        +  A+ TSL VI  +S+ 
Sbjct: 127 ALLLAGGLIGFLSGLFGIGGGFLLVPALLLLLGLP-------LKKAVATSLLVILLSSLA 179

Query: 85  SFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILM 141
           + + +   G ++  +L   +    +  ++ + +   +    L + FA+  LL+G+ +
Sbjct: 180 ALLGYALLGLVDWPLLLLLLPGALLGALLGARLARRLPPRLLRRLFAVLLLLVGLKL 236


>gnl|CDD|31074 COG0730, COG0730, Predicted permeases [General function prediction
           only].
          Length = 258

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 24/261 (9%)

Query: 21  DYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAP 80
             + L+ +   L+G +SGL G GGGL+ VP L            +    A+GTSL  +  
Sbjct: 5   MTLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLG--------LPPAAALGTSLLAVLF 56

Query: 81  TSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGIL 140
           TS+ S + + + G ++ K+    +    I   + +L+   +    L   F +  LL+ + 
Sbjct: 57  TSLSSALAYLKRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALY 116

Query: 141 MLKRDRLYCERKFPDN------YVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYK 194
           ML   RL                +  + G + GFLSG  GVGGG      +L       K
Sbjct: 117 MLLGPRLAKAEDRAARLRPLLFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLK 176

Query: 195 ATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKL 254
               ++    L                     ++LG V+    L++   SIL   L  +L
Sbjct: 177 LAVATSLAIILNTASNGAALY----------LFALGAVDWPLALLLAVGSILGAYLGARL 226

Query: 255 SYMIGKKYLTIGFSMIMFTTS 275
           +  +  K L   F++++   +
Sbjct: 227 ARRLSPKVLRRLFALVLLAVA 247


>gnl|CDD|31682 COG1493, HprK, Serine kinase of the HPr protein, regulates
           carbohydrate metabolism [Signal transduction
           mechanisms].
          Length = 308

 Score = 28.3 bits (63), Expect = 2.7
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 36  LSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTI 95
           ++G  G G   + + ++ +  +L+  DD++ +    G  L   AP  +   +E R  G I
Sbjct: 150 ITGPSGAGKSELALELIKRGHRLVA-DDAVEIFREGGNRLVGRAPELLAGLLEIRGLGII 208

Query: 96  NMKILKDWIFVLPITTV 112
           N+  +     V     +
Sbjct: 209 NVMTVFGAGSVRAEKPI 225


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.145    0.444 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,480,356
Number of extensions: 196210
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 124
Length of query: 279
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 186
Effective length of database: 4,254,100
Effective search space: 791262600
Effective search space used: 791262600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.7 bits)