RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780993|ref|YP_003065406.1| hypothetical protein
CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
(279 letters)
>gnl|CDD|151018 pfam10441, Urb2, Urb2/Npa2 family. This family includes the Urb2
protein from yeast that are involved in ribosome
biogenesis.
Length = 220
Score = 29.2 bits (66), Expect = 1.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 106 VLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFP 154
LP+ + + S + +D F C L+ + L R R +F
Sbjct: 32 TLPLVSTLASSLRPSLDPEDSGSIFISLCQLLSSI-LLRHRKKLSGRFH 79
>gnl|CDD|172873 PRK14397, PRK14397, membrane protein; Provisional.
Length = 222
Score = 27.9 bits (62), Expect = 3.0
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 194 KATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII--LPISILIT 248
KA AT+ GV +AF LL+ L L W GFV++G++ ++ LP+ +LIT
Sbjct: 104 KAVATTIGVFIPLAFWQLLLSGI----LCLLVIWRSGFVSLGSLTLVTALPVMLLIT 156
>gnl|CDD|182593 PRK10621, PRK10621, hypothetical protein; Provisional.
Length = 266
Score = 27.4 bits (61), Expect = 4.8
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 27/255 (10%)
Query: 22 YICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPT 81
+ ++ + L+G + + G GGGL+ +P L A + A+ T+
Sbjct: 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAA--------GMSPAQALATNKLQACGG 61
Query: 82 SVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILM 141
S + + R +N+ K I + + ++ +L++ +V L + I + +G+
Sbjct: 62 SFSASLYFIRRKVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYF 121
Query: 142 LKRDRLYCE---RKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNL-LMLFYGASIYKATA 197
L +L E R+ I G GF G G G G F L + G ++ KATA
Sbjct: 122 LLMPKLGEEDRQRRLYGLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATA 181
Query: 198 TSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFV---------NIGAVLIILPISILIT 248
+ ++A LL+ I G + W+ GFV +GA L++ LI
Sbjct: 182 HAKVLNATSNIGGLLLFILGGKVI-----WATGFVMLVGQFLGARLGARLVLSKGQKLIR 236
Query: 249 PLATKLSYMIGKKYL 263
P+ +S ++ K L
Sbjct: 237 PMIVIVSAVMSAKLL 251
>gnl|CDD|162978 TIGR02690, resist_ArsH, arsenical resistance protein ArsH. Members
of this protein family occur in arsenate resistance
operons that include at least two different types of
arsenate reductase. ArsH is not required for arsenate
resistance in some systems. This family belongs to the
larger family of NADPH-dependent FMN reductases (Pfam
model pfam03358). The function of ArsH is not known.
Length = 219
Score = 27.1 bits (60), Expect = 5.1
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 84 MSFMEHRRHGTINMKILKDWIFVLPIT 110
+ RHG I KD I +P++
Sbjct: 94 QVWCSPERHGAI-TGSQKDQIDWIPLS 119
>gnl|CDD|181943 PRK09548, PRK09548, PTS system ascorbate-specific transporter
subunits IICB; Provisional.
Length = 602
Score = 27.0 bits (60), Expect = 5.4
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 38/138 (27%)
Query: 164 MVTGFLSGALG----VGGGIFTNLL----------------MLFYGASI---------YK 194
+V GF+ GA+G VG I NL M F A+I +K
Sbjct: 326 VVFGFMWGAIGQFLAVGILIAFNLKGIDVDAPIIIIPGFIPMFFSNATIGVFANHFGGWK 385
Query: 195 ATATSAGVSALIAF------PALLVRIYSGWGLN---GLPPWSLGFVNIGAVLIILPISI 245
A V +I L+ I G N G+ W+LGF I L+ +
Sbjct: 386 AVMKICFVMGIIEVLGSAWVIQLIANISQGTQFNGWMGMADWALGFPPILQGLVGSKSAF 445
Query: 246 LITPLATKLSYMIGKKYL 263
LA L YMI
Sbjct: 446 FFVLLALALVYMIFASKQ 463
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 26.5 bits (59), Expect = 7.5
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 137 MGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKAT 196
M +L L ++ + ++P +I M S ALG+G F N ++ +
Sbjct: 1 MELLRL----VWRQYRWP-----FISVMALSLASAALGIGLIAFINQRLI-------ETA 44
Query: 197 ATSAGVSALIAFPALLV 213
TS V L F LL+
Sbjct: 45 DTSLLV--LPEFLGLLL 59
>gnl|CDD|184723 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 26.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 47 VMVPVLSK-AFQLMGIDDSICMHVAMGT-SLGVIAPTSVMSFME 88
VM V+++ AFQ++G D +IC+ G L V+ P V + ++
Sbjct: 334 VMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPVLVFNLLQ 377
>gnl|CDD|148419 pfam06799, DUF1230, Protein of unknown function (DUF1230). This
family consists of several hypothetical plant and
photosynthetic bacterial proteins of around 160 residues
in length. The function of this family is unknown
although looking at the species distribution the protein
may play a part in photosynthesis.
Length = 145
Score = 26.4 bits (59), Expect = 9.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 196 TATSAGVSALIAFPALLVRIYSGW 219
SA + AL+ +L+R+Y GW
Sbjct: 64 LILSAALGALLIPLLILLRLYLGW 87
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.145 0.444
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,584,697
Number of extensions: 303906
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1069
Number of HSP's successfully gapped: 98
Length of query: 279
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,006,537
Effective search space: 749222419
Effective search space used: 749222419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.4 bits)