RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780993|ref|YP_003065406.1| hypothetical protein
CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
         (279 letters)



>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase,
           GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia
           coli K12} (A:253-366)
          Length = 114

 Score = 28.4 bits (63), Expect = 0.98
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 216 YSGWGLNGLPPWSLGFVNIGAVLIIL 241
           Y G+ +   PP S G ++I  +L IL
Sbjct: 6   YRGYQVYSXPPPSSGGIHIVQILNIL 31


>2v36_A Gamma-glutamyltranspeptidase large chain; transferase,
           glutathione biosynthesis, gamma-glutamyl transferase,
           acyltransferase, zymogen; 1.85A {Bacillus subtilis}
           (A:249-376)
          Length = 128

 Score = 27.2 bits (60), Expect = 2.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 216 YSGWGLNGLPPWSLGFVNIGAVLIIL 241
           Y G+ +   PP S G + +  +  IL
Sbjct: 6   YQGYQIATTPPPSSGGIFLLQMPKIL 31


>2z9e_A Cellulose synthase operon protein D; alpha and beta fold,
           octamer, tetramer of dimers, molecule ring, cellulose
           biosynthesis; 2.50A {Acetobacter xylinus} PDB: 2z9f_A
           (A:38-167)
          Length = 130

 Score = 26.4 bits (58), Expect = 4.0
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 199 SAGVSALIAFPALLVRIYSGW 219
           SAG  +      +L  +Y  W
Sbjct: 69  SAGEPSGTWLAPVLEGLYGRW 89


>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha,
           calmodulin-binding, cell membrane, membrane,
           phosphoprotein, membrane protein; 2.20A {Homo sapiens}
           (A:103-326)
          Length = 224

 Score = 26.5 bits (58), Expect = 4.4
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 146 RLYCERKFPDNYVKYIWGMVTGFL 169
           +     KFPD     +  ++   L
Sbjct: 108 KDSLHEKFPDAGEDELLKIIGNLL 131


>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase,
          PF01266, NESG, PAR240, structural genomics, PSI-2; HET:
          FAD; 1.90A {Pseudomonas aeruginosa PAO1}
          (A:41-122,A:180-297)
          Length = 200

 Score = 26.1 bits (57), Expect = 5.7
 Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 42 VGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPT----SVMSFMEHRRHG 93
          +G G+ + P   +A   +G+  ++         L  I  +              + 
Sbjct: 3  LGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNA 58


>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase,
           transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB:
           2qm6_A* 3fnm_A* 2nqo_A (A:264-377)
          Length = 114

 Score = 25.7 bits (56), Expect = 6.7
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 216 YSGWGLNGLPPWSLGFVNIGAVLIIL 241
           Y G+ +  + P S G  ++  +L ++
Sbjct: 6   YRGYKIISMSPPSSGGTHLIQILNVM 31


>1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase;
           HET: DNA GMP; 2.21A {Enterobacteria phage RB69}
           (A:385-426,A:576-732)
          Length = 199

 Score = 25.4 bits (55), Expect = 9.7
 Identities = 5/56 (8%), Positives = 17/56 (30%)

Query: 100 LKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPD 155
              ++    +T++  S++       + +   A      G + L+           +
Sbjct: 19  RYKYVMSFDLTSLYPSIIRQVNISRYYDLRNATAITTFGQMALQWIERKVNEYLNE 74


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.145    0.444 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,071,159
Number of extensions: 87676
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 39
Length of query: 279
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 192
Effective length of database: 2,015,014
Effective search space: 386882688
Effective search space used: 386882688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.9 bits)