BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780993|ref|YP_003065406.1| hypothetical protein
CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
         (279 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 279

 Score =  554 bits (1428), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/279 (100%), Positives = 279/279 (100%)

Query: 1   MYDLLYNFSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMG 60
           MYDLLYNFSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMG
Sbjct: 1   MYDLLYNFSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMG 60

Query: 61  IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120
           IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH
Sbjct: 61  IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120

Query: 121 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIF 180
           VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIF
Sbjct: 121 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIF 180

Query: 181 TNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII 240
           TNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII
Sbjct: 181 TNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII 240

Query: 241 LPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279
           LPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA
Sbjct: 241 LPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 22.7 bits (47), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 173 LGVGGGIFTNLLMLFYG-ASIY 193
           LG GG IF ++ + F+G AS++
Sbjct: 67  LGYGGAIFADVAIQFFGIASVF 88


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.145    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,026
Number of Sequences: 1233
Number of extensions: 6658
Number of successful extensions: 26
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 279
length of database: 328,796
effective HSP length: 73
effective length of query: 206
effective length of database: 238,787
effective search space: 49190122
effective search space used: 49190122
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 38 (19.2 bits)