BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] (279 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] Length = 279 Score = 554 bits (1428), Expect = e-160, Method: Compositional matrix adjust. Identities = 279/279 (100%), Positives = 279/279 (100%) Query: 1 MYDLLYNFSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMG 60 MYDLLYNFSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMG Sbjct: 1 MYDLLYNFSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMG 60 Query: 61 IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH Sbjct: 61 IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 Query: 121 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIF 180 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIF Sbjct: 121 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIF 180 Query: 181 TNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII 240 TNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII Sbjct: 181 TNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLII 240 Query: 241 LPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279 LPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA Sbjct: 241 LPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 22.7 bits (47), Expect = 7.3, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Query: 173 LGVGGGIFTNLLMLFYG-ASIY 193 LG GG IF ++ + F+G AS++ Sbjct: 67 LGYGGAIFADVAIQFFGIASVF 88 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.331 0.145 0.444 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 170,026 Number of Sequences: 1233 Number of extensions: 6658 Number of successful extensions: 26 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 7 length of query: 279 length of database: 328,796 effective HSP length: 73 effective length of query: 206 effective length of database: 238,787 effective search space: 49190122 effective search space used: 49190122 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 38 (19.2 bits)