Query gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 20:54:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780994.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3e0r_A C3-degrading proteinas 14.9 84 0.0025 15.2 1.7 14 2-15 48-61 (120) 2 >3ei3_A DNA damage-binding pro 8.7 1.8E+02 0.0054 13.4 3.8 48 2-49 25-74 (104) 3 >2kct_A Cytochrome C-type biog 8.0 1.9E+02 0.0055 13.4 1.5 20 15-34 37-56 (94) 4 >2djm_A Glucoamylase A; beta s 8.0 1.5E+02 0.0045 13.9 1.1 13 17-29 30-42 (106) 5 >2fot_C Alpha-II spectrin spec 7.9 96 0.0028 14.9 0.0 14 7-20 6-19 (42) 6 >2eef_A Protein phosphatase 1, 7.6 1.7E+02 0.005 13.6 1.1 13 17-29 57-69 (156) 7 >3elq_A Arylsulfate sulfotrans 7.5 2.1E+02 0.0062 13.1 2.5 26 2-27 44-76 (96) 8 >3bc8_A O-phosphoseryl-tRNA(SE 7.1 1.5E+02 0.0043 14.0 0.6 17 9-25 38-54 (153) 9 >1ok8_A Major envelope protein 5.6 2.1E+02 0.0061 13.2 0.7 15 1-15 36-50 (105) 10 >2jkb_A Sialidase B; intramole 5.5 2.7E+02 0.0081 12.5 2.0 39 2-40 40-78 (251) No 1 >>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural genomics, protein structure initiative; 2.30A {Streptococcus pneumoniae} (A:68-187) Probab=14.91 E-value=84 Score=15.24 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=10.8 Q ss_pred CCCEEEEEECCCCC Q ss_conf 86299998401034 Q gi|254780994|r 2 NGDIFLVHRRDEMD 15 (53) Q Consensus 2 ngdiflvhrrdemd 15 (53) .||.||+|..|... T Consensus 48 EgDlfLlHAEdDi~ 61 (120) T 3e0r_A 48 EDDLILIHAEDDIA 61 (120) T ss_dssp TCCEEEEECCSCGG T ss_pred CCCEEEEEECCCCC T ss_conf 89979999876554 No 2 >>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 2b5n_A (A:271-374) Probab=8.72 E-value=1.8e+02 Score=13.44 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=28.2 Q ss_pred CCCEEEEEECCCCCCC--HHHHEEEEEEEEEECCCCEEEEECCHHHHHHH Q ss_conf 8629999840103410--00000133455541358269973651532322 Q gi|254780994|r 2 NGDIFLVHRRDEMDSK--NFSKAIEVRYTRLLEDNPILIGMGEGILFCGI 49 (53) Q Consensus 2 ngdiflvhrrdemdsk--nfskaievrytrllednpiligmgegilfcgi 49 (53) .||+|++.-.-+-+++ .--+.+++.|---.-----+.-++.|.+|+|- T Consensus 25 ~GdL~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~assl~~l~~g~lFvgS 74 (104) T 3ei3_A 25 EGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGS 74 (104) T ss_dssp TCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTTEEEEEC T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEEEE T ss_conf 99899999995377456517878888764875573189994896799996 No 3 >>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str} (A:) Probab=8.03 E-value=1.9e+02 Score=13.40 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=15.2 Q ss_pred CCCHHHHEEEEEEEEEECCC Q ss_conf 41000000133455541358 Q gi|254780994|r 15 DSKNFSKAIEVRYTRLLEDN 34 (53) Q Consensus 15 dsknfskaievrytrlledn 34 (53) |.++-++.|.|+|+..+-|+ T Consensus 37 D~~~~~~~i~V~Y~G~~Pd~ 56 (94) T 2kct_A 37 DKDNTSKTVWVLYKGAVPDT 56 (94) T ss_dssp CSSCTTCEEEEEEESCCCTT T ss_pred ECCCCCCEEEEEECCCCCHH T ss_conf 08878849999989979733 No 4 >>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A (A:) Probab=8.03 E-value=1.5e+02 Score=13.88 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=10.5 Q ss_pred CHHHHEEEEEEEE Q ss_conf 0000001334555 Q gi|254780994|r 17 KNFSKAIEVRYTR 29 (53) Q Consensus 17 knfskaievrytr 29 (53) -.|.|.+.||||. T Consensus 30 lafeK~V~VR~T~ 42 (106) T 2djm_A 30 IAYSKKVTVVYAD 42 (106) T ss_dssp SSSCEEEEEEEEE T ss_pred CCCCEEEEEEEEC T ss_conf 7872599999925 No 5 >>2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens} (C:) Probab=7.91 E-value=96 Score=14.93 Aligned_cols=14 Identities=50% Similarity=0.427 Sum_probs=10.6 Q ss_pred EEEECCCCCCCHHH Q ss_conf 99840103410000 Q gi|254780994|r 7 LVHRRDEMDSKNFS 20 (53) Q Consensus 7 lvhrrdemdsknfs 20 (53) -.-.|||-|||.-| T Consensus 6 g~~p~deadsktas 19 (42) T 2fot_C 6 GMMPRDETDSKTAS 19 (42) T ss_dssp -------------- T ss_pred CCCCCCCCCCCCCC T ss_conf 35765422235557 No 6 >>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=7.61 E-value=1.7e+02 Score=13.64 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=9.8 Q ss_pred CHHHHEEEEEEEE Q ss_conf 0000001334555 Q gi|254780994|r 17 KNFSKAIEVRYTR 29 (53) Q Consensus 17 knfskaievrytr 29 (53) -.|.|.+.||||- T Consensus 57 lafeK~V~VRyT~ 69 (156) T 2eef_A 57 LAFEKTVKIRMTF 69 (156) T ss_dssp SSSCCEEEEEEES T ss_pred CCCCEEEEEEEEE T ss_conf 5884589999948 No 7 >>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* (A:400-495) Probab=7.45 E-value=2.1e+02 Score=13.13 Aligned_cols=26 Identities=12% Similarity=0.363 Sum_probs=16.9 Q ss_pred CCCEEEEEEC-------CCCCCCHHHHEEEEEE Q ss_conf 8629999840-------1034100000013345 Q gi|254780994|r 2 NGDIFLVHRR-------DEMDSKNFSKAIEVRY 27 (53) Q Consensus 2 ngdiflvhrr-------demdsknfskaievry 27 (53) ||+|.+---. +-..|.++|.++|++- T Consensus 44 ~g~i~vFDNg~~r~~~~~~~~~~~ySR~v~y~I 76 (96) T 3elq_A 44 KGTLTIFDNGDGRHLEQPALPTMKYSRFVEYKI 76 (96) T ss_dssp TSCEEEEECCTTGGGSCCSSGGGCCCEEEEEEE T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 980999868997777766678888653899997 No 8 >>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate- loop, pyridoxal phosphate, selenocysteine synthase (SECS; HET: LLP; 1.65A {Mus musculus} (A:1-114,A:295-333) Probab=7.08 E-value=1.5e+02 Score=13.96 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=12.1 Q ss_pred EECCCCCCCHHHHEEEE Q ss_conf 84010341000000133 Q gi|254780994|r 9 HRRDEMDSKNFSKAIEV 25 (53) Q Consensus 9 hrrdemdsknfskaiev 25 (53) |.-.-|||.||.+.+-| T Consensus 38 ~~Ls~mDsNNf~~nvgv 54 (153) T 3bc8_A 38 HELAVMDSNNFLGNCGV 54 (153) T ss_dssp HHHHHTBGGGCTTCCCC T ss_pred HHHHHCCCCCCCCCCCC T ss_conf 99984556776664676 No 9 >>1ok8_A Major envelope protein E; virus/viral protein, membrane fusion, flavivirus, fusion peptide, low-PH conformational change, trimer; HET: NAG; 2.0A {Dengue virus type 2} (A:53-67,A:121-132,A:193-270) Probab=5.57 E-value=2.1e+02 Score=13.15 Aligned_cols=15 Identities=40% Similarity=0.590 Sum_probs=9.8 Q ss_pred CCCCEEEEEECCCCC Q ss_conf 986299998401034 Q gi|254780994|r 1 MNGDIFLVHRRDEMD 15 (53) Q Consensus 1 mngdiflvhrrdemd 15 (53) |+.+-|||||.=-+| T Consensus 36 m~~k~WlVHRdWF~D 50 (105) T 1ok8_A 36 MKDKAWLVHRQWFLD 50 (105) T ss_dssp ETTEEEEEEHHHHHH T ss_pred ECCEEEEEEHHHHHC T ss_conf 789088988868755 No 10 >>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* (A:222-341,A:445-525,A:637-686) Probab=5.47 E-value=2.7e+02 Score=12.53 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=22.5 Q ss_pred CCCEEEEEECCCCCCCHHHHEEEEEEEEEECCCCEEEEE Q ss_conf 862999984010341000000133455541358269973 Q gi|254780994|r 2 NGDIFLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGM 40 (53) Q Consensus 2 ngdiflvhrrdemdsknfskaievrytrllednpiligm 40 (53) ++.|.+|-||-+...+.++..+-+---+-...+++..++ T Consensus 40 ~a~IdlV~Rrs~d~G~TW~~~i~i~d~~Dv~~~~v~~~~ 78 (251) T 2jkb_A 40 KSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYWPR 78 (251) T ss_dssp SSCEEEEEEEESSTTSSCCCCEEEECCCSBCCCCCCCCC T ss_pred CCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 788765899860788402444633568864430013566 Done!