Query gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:39:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780994.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pul_A Hypothetical protein C3 11.6 41 0.0017 16.1 0.1 13 11-23 39-51 (125)
2 2djm_A Glucoamylase A; beta sa 7.3 1.2E+02 0.0051 13.6 1.1 13 17-29 30-42 (106)
3 2eef_A Protein phosphatase 1, 6.4 1.5E+02 0.0062 13.1 1.1 11 18-28 58-68 (156)
4 2jrf_A Tubulin polymerization- 6.3 85 0.0036 14.4 -0.2 12 12-23 28-39 (184)
5 1wlm_A Protein CGI-38; structu 6.0 90 0.0038 14.3 -0.2 12 12-23 35-46 (151)
6 2fot_C Alpha-II spectrin spect 5.6 1.1E+02 0.0044 13.9 0.0 12 9-20 8-19 (42)
7 2kct_A Cytochrome C-type bioge 5.4 1.9E+02 0.0082 12.5 1.5 20 15-34 37-56 (94)
8 2vt1_B Surface presentation of 4.4 2.3E+02 0.0097 12.1 1.5 28 21-48 4-31 (93)
9 2vvr_A Ribose-5-phosphate isom 4.3 1E+02 0.0042 14.0 -0.8 6 43-48 62-67 (149)
10 3k7p_A Ribose 5-phosphate isom 4.0 1.1E+02 0.0047 13.8 -0.8 6 43-48 85-90 (179)
No 1
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=11.62 E-value=41 Score=16.07 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=10.0
Q ss_pred CCCCCCCHHHHEE
Q ss_conf 0103410000001
Q gi|254780994|r 11 RDEMDSKNFSKAI 23 (53)
Q Consensus 11 rdemdsknfskai 23 (53)
..|||++||+|-.
T Consensus 39 ~~eM~~~~F~Klc 51 (125)
T 1pul_A 39 ATEMTGKNFDKWL 51 (125)
T ss_dssp SSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 5667878999999
No 2
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=7.28 E-value=1.2e+02 Score=13.58 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=10.2
Q ss_pred CHHHHEEEEEEEE
Q ss_conf 0000001334555
Q gi|254780994|r 17 KNFSKAIEVRYTR 29 (53)
Q Consensus 17 knfskaievrytr 29 (53)
-.|.|.+.||||.
T Consensus 30 lafeK~V~VRyT~ 42 (106)
T 2djm_A 30 IAYSKKVTVVYAD 42 (106)
T ss_dssp SSSCEEEEEEEEE
T ss_pred CCCCEEEEEEEEC
T ss_conf 7872389999915
No 3
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=6.43 E-value=1.5e+02 Score=13.13 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=8.8
Q ss_pred HHHHEEEEEEE
Q ss_conf 00000133455
Q gi|254780994|r 18 NFSKAIEVRYT 28 (53)
Q Consensus 18 nfskaievryt 28 (53)
.|.|.+.||||
T Consensus 58 afeK~V~VRyT 68 (156)
T 2eef_A 58 AFEKTVKIRMT 68 (156)
T ss_dssp SSCCEEEEEEE
T ss_pred CCCEEEEEEEE
T ss_conf 98618999996
No 4
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=6.31 E-value=85 Score=14.41 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.2
Q ss_pred CCCCCCHHHHEE
Q ss_conf 103410000001
Q gi|254780994|r 12 DEMDSKNFSKAI 23 (53)
Q Consensus 12 demdsknfskai 23 (53)
.+||+++|.|..
T Consensus 28 ~~Md~~~F~Kl~ 39 (184)
T 2jrf_A 28 QEMNGKNWAKLC 39 (184)
T ss_dssp SEEEHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 617677999999
No 5
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=6.03 E-value=90 Score=14.28 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.3
Q ss_pred CCCCCCHHHHEE
Q ss_conf 103410000001
Q gi|254780994|r 12 DEMDSKNFSKAI 23 (53)
Q Consensus 12 demdsknfskai 23 (53)
.+||+++|.|..
T Consensus 35 ~~M~~~~f~Kl~ 46 (151)
T 1wlm_A 35 QEMNGKNWAKLC 46 (151)
T ss_dssp SEEEHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 546788999999
No 6
>2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens}
Probab=5.61 E-value=1.1e+02 Score=13.91 Aligned_cols=12 Identities=58% Similarity=0.576 Sum_probs=8.9
Q ss_pred EECCCCCCCHHH
Q ss_conf 840103410000
Q gi|254780994|r 9 HRRDEMDSKNFS 20 (53)
Q Consensus 9 hrrdemdsknfs 20 (53)
-.|||-|||.-|
T Consensus 8 ~p~deadskta~ 19 (42)
T 2fot_C 8 MPRDETDSKTAS 19 (42)
T ss_dssp ------------
T ss_pred CCCCCCCCCCCC
T ss_conf 764422235557
No 7
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=5.39 E-value=1.9e+02 Score=12.50 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=13.7
Q ss_pred CCCHHHHEEEEEEEEEECCC
Q ss_conf 41000000133455541358
Q gi|254780994|r 15 DSKNFSKAIEVRYTRLLEDN 34 (53)
Q Consensus 15 dsknfskaievrytrlledn 34 (53)
|.++-++.|.|+|+..+-|+
T Consensus 37 D~~~~~~~i~V~Y~G~~Pdl 56 (94)
T 2kct_A 37 DKDNTSKTVWVLYKGAVPDT 56 (94)
T ss_dssp CSSCTTCEEEEEEESCCCTT
T ss_pred ECCCCCEEEEEEECCCCCHH
T ss_conf 76688669999988879658
No 8
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=4.35 E-value=2.3e+02 Score=12.09 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=21.7
Q ss_pred HEEEEEEEEEECCCCEEEEECCHHHHHH
Q ss_conf 0013345554135826997365153232
Q gi|254780994|r 21 KAIEVRYTRLLEDNPILIGMGEGILFCG 48 (53)
Q Consensus 21 kaievrytrllednpiligmgegilfcg 48 (53)
-|+-.+|.+-...-|+++..|.|.+---
T Consensus 4 ~AVAL~Y~~~~~~aP~VvAkG~g~~A~~ 31 (93)
T 2vt1_B 4 IAIGIYFNPEIAPAPFISLIETNQCALA 31 (93)
T ss_dssp EEEEEECCTTTCSSCEEEEEEEHHHHHH
T ss_pred EEEEEEECCCCCCCCEEEEECCCHHHHH
T ss_conf 9999985789998999998518599999
No 9
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=4.34 E-value=1e+02 Score=14.02 Aligned_cols=6 Identities=83% Similarity=1.868 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 153232
Q gi|254780994|r 43 GILFCG 48 (53)
Q Consensus 43 gilfcg 48 (53)
||||||
T Consensus 62 GIliCG 67 (149)
T 2vvr_A 62 GILICG 67 (149)
T ss_dssp EEEEES
T ss_pred EEEECC
T ss_conf 589558
No 10
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi strain cl brener} PDB: 3k7s_A* 3k7o_A* 3k8c_A*
Probab=3.97 E-value=1.1e+02 Score=13.76 Aligned_cols=6 Identities=50% Similarity=1.027 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 153232
Q gi|254780994|r 43 GILFCG 48 (53)
Q Consensus 43 gilfcg 48 (53)
||||||
T Consensus 85 GIliCG 90 (179)
T 3k7p_A 85 GVLAAG 90 (179)
T ss_dssp EEEEES
T ss_pred EEEECC
T ss_conf 899669
Done!