RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62] (53 letters) >gnl|CDD|178312 PLN02710, PLN02710, farnesyltranstransferase subunit beta. Length = 439 Score = 25.9 bits (57), Expect = 2.5 Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 6 FLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGEGILFC 47 F +H EMD + AI V + D+ ++ G+G+ IL C Sbjct: 162 FRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSC 203 >gnl|CDD|180531 PRK06330, PRK06330, transcript cleavage factor/unknown domain fusion protein; Validated. Length = 718 Score = 23.9 bits (52), Expect = 8.6 Identities = 7/32 (21%), Positives = 16/32 (50%) Query: 6 FLVHRRDEMDSKNFSKAIEVRYTRLLEDNPIL 37 FL + E+D +N + E + ++ + I+ Sbjct: 350 FLGEKSSELDCENIASLSEDQIEDIVNNIEIV 381 >gnl|CDD|182821 PRK10899, PRK10899, hypothetical protein; Provisional. Length = 1022 Score = 24.1 bits (53), Expect = 9.1 Identities = 6/15 (40%), Positives = 9/15 (60%) Query: 1 MNGDIFLVHRRDEMD 15 M G + LV R+ M+ Sbjct: 938 MKGSVDLVRRQINME 952 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.329 0.149 0.445 Gapped Lambda K H 0.267 0.0638 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 894,120 Number of extensions: 39749 Number of successful extensions: 123 Number of sequences better than 10.0: 1 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 10 Length of query: 53 Length of database: 5,994,473 Length adjustment: 26 Effective length of query: 27 Effective length of database: 5,432,665 Effective search space: 146681955 Effective search space used: 146681955 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.2 bits)