RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780994|ref|YP_003065407.1| hypothetical protein
CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62]
         (53 letters)



>gnl|CDD|178312 PLN02710, PLN02710, farnesyltranstransferase subunit beta.
          Length = 439

 Score = 25.9 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 6   FLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGEGILFC 47
           F +H   EMD +    AI V     + D+ ++ G+G+ IL C
Sbjct: 162 FRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSC 203


>gnl|CDD|180531 PRK06330, PRK06330, transcript cleavage factor/unknown domain
           fusion protein; Validated.
          Length = 718

 Score = 23.9 bits (52), Expect = 8.6
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 6   FLVHRRDEMDSKNFSKAIEVRYTRLLEDNPIL 37
           FL  +  E+D +N +   E +   ++ +  I+
Sbjct: 350 FLGEKSSELDCENIASLSEDQIEDIVNNIEIV 381


>gnl|CDD|182821 PRK10899, PRK10899, hypothetical protein; Provisional.
          Length = 1022

 Score = 24.1 bits (53), Expect = 9.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 1   MNGDIFLVHRRDEMD 15
           M G + LV R+  M+
Sbjct: 938 MKGSVDLVRRQINME 952


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.149    0.445 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 894,120
Number of extensions: 39749
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 10
Length of query: 53
Length of database: 5,994,473
Length adjustment: 26
Effective length of query: 27
Effective length of database: 5,432,665
Effective search space: 146681955
Effective search space used: 146681955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.2 bits)