BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780994|ref|YP_003065407.1| hypothetical protein
CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62]
(53 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 53
Score = 110 bits (274), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MNGDIFLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGEGILFCGIFYAL 53
MNGDIFLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGEGILFCGIFYAL
Sbjct: 1 MNGDIFLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGEGILFCGIFYAL 53
>gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Length = 310
Score = 23.5 bits (49), Expect = 0.63, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 25 VRYTRLLEDNPILIGMGEGILFCGIFY 51
+ + LL+ NP +I +G +LF + Y
Sbjct: 124 ISFVLLLQFNPFVICVGFALLFISLLY 150
>gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 325
Score = 23.1 bits (48), Expect = 0.86, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 14 MDSKNFSKAIEVR-YTRLLEDNPILIG 39
M S +F + V+ R L+DNP+L+G
Sbjct: 105 MHSISFPEGFTVKQMARRLKDNPLLVG 131
>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 608
Score = 23.1 bits (48), Expect = 1.0, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 35 PILIGMGEGILFCG 48
P++IG GEG +F G
Sbjct: 177 PLIIGHGEGEMFVG 190
>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 354
Score = 22.3 bits (46), Expect = 1.5, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 22 AIEVRYTRLLEDNPILIGMGEGIL 45
A+ +RY + D P+L+ G+ ++
Sbjct: 276 ALALRYIQTENDAPVLVAKGQNLI 299
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 20.8 bits (42), Expect = 5.2, Method: Composition-based stats.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 IGMGEGILFCGIF 50
IG+G+GI C +F
Sbjct: 8 IGIGKGIEICTLF 20
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.329 0.149 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,568
Number of Sequences: 1233
Number of extensions: 1198
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 53
length of database: 328,796
effective HSP length: 25
effective length of query: 28
effective length of database: 297,971
effective search space: 8343188
effective search space used: 8343188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 31 (16.5 bits)