HHsearch alignment for GI: 254780995 and conserved domain: COG0708
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair].
Probab=99.75 E-value=1e-18 Score=120.22 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH------------------HHHCCCCC---CCHHHCCCCCCCCC
Q ss_conf 9999999998511699889996147776883100278------------------76326554---10000257676871
Q gi|254780995|r 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDG---LLIRFPQEKESTCN 64 (125)
Q Consensus 6 ~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~------------------~~~l~~~~---~~~~~~~~~~~~~~ 64 (125)
T Consensus 126 ~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p~~~~YTw 205 (261)
T COG0708 126 LDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEKYTW 205 (261)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 99999999998745998799666311785321257255540168889898999999999875306456764899996351
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 038875543335521012100257321--15430247411258678875649999961
Q gi|254780995|r 65 VIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125)
Q Consensus 65 ~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125)
T Consensus 206 W~YR~~~~~~n--~G~RID~~l~S~~L~~~~~~a~I~~~~rg~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 206 WDYRANAARRN--RGWRIDYILVSPALADRLKDAGIDREVRGWEKPSDHAPVWVELDL 261 (261)
T ss_pred CCCCCCHHHHC--CCEEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECC
T ss_conf 25621305663--860688897189999888666863788558888885757999629