HHsearch alignment for GI: 254780995 and conserved domain: COG0708

>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair].
Probab=99.75  E-value=1e-18  Score=120.22  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH------------------HHHCCCCC---CCHHHCCCCCCCCC
Q ss_conf             9999999998511699889996147776883100278------------------76326554---10000257676871
Q gi|254780995|r    6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDG---LLIRFPQEKESTCN   64 (125)
Q Consensus         6 ~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~------------------~~~l~~~~---~~~~~~~~~~~~~~   64 (125)
T Consensus       126 ~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p~~~~YTw  205 (261)
T COG0708         126 LDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEKYTW  205 (261)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
T ss_conf             99999999998745998799666311785321257255540168889898999999999875306456764899996351


Q ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             038875543335521012100257321--15430247411258678875649999961
Q gi|254780995|r   65 VIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF  120 (125)
Q Consensus        65 ~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  120 (125)
T Consensus       206 W~YR~~~~~~n--~G~RID~~l~S~~L~~~~~~a~I~~~~rg~e~pSDHaPV~~e~~~  261 (261)
T COG0708         206 WDYRANAARRN--RGWRIDYILVSPALADRLKDAGIDREVRGWEKPSDHAPVWVELDL  261 (261)
T ss_pred             CCCCCCHHHHC--CCEEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECC
T ss_conf             25621305663--860688897189999888666863788558888885757999629