HHsearch alignment for GI: 254780995 and conserved domain: COG5239
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification].
Probab=97.42 E-value=0.00015 Score=44.55 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=58.7
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHC-------------CCCC--------CCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899961477768831002787632-------------6554--------100002576768710388755433355210
Q gi|254780995|r 22 PFVIAGDFNRKINSIGDTDDFWQKM-------------DPDG--------LLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80 (125)
Q Consensus 22 pvIi~GDFN~~~~~~~~~~~~~~~l-------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 80 (125)
T Consensus 244 ~~l~~gd~ns~~~s~vy~~l~~~~~q~H~~~~~~~~~lysvg~~~~h~~n~~~~~~~~~~~fTN~t~~~kG~iDYIfy~~ 323 (378)
T COG5239 244 DILITGDFNSLRASLVYKFLVTSQIQLHESLNGRDFSLYSVGYKFVHPENLKSDNSKGELGFTNWTPGFKGVIDYIFYHG 323 (378)
T ss_pred CCCCCCCCCCEECCEEHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 42357871000033001454407988641035443222015545558423155787687650135665454257999846
Q ss_pred HHHHCCCCCCCEEEE----ECCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 121002573211543----024741125867887564999996164689
Q gi|254780995|r 81 DNKNFLIDNSFSIVS----YDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125 (125)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~SDH~PV~~~l~f~~~~~ 125 (125)
T Consensus 324 ~~~~~-~~~~l~~ve~e~~~k~~G~p-n~~~pSdhipl~~ef~~~~~~~ 370 (378)
T COG5239 324 GLLTR-QTGLLGVVEGEYASKVIGLP-NMPFPSDHIPLLAEFASDHKNL 370 (378)
T ss_pred CCCEE-EECCCCCCCCCHHHHHCCCC-CCCCCCCCCCCHHCCCCCCCCC
T ss_conf 86104-40455554510233110567-8999512440010134432013