HHsearch alignment for GI: 254780995 and conserved domain: TIGR00633
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=99.83 E-value=5.1e-21 Score=132.58 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCHH---------------------HHHCCCC----CCCHHHCC
Q ss_conf 999999999985116--99889996147776883100278---------------------7632655----41000025
Q gi|254780995|r 5 QGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPD----GLLIRFPQ 57 (125)
Q Consensus 5 Q~~~L~~~i~~~~~~--~~pvIi~GDFN~~~~~~~~~~~~---------------------~~~l~~~----~~~~~~~~ 57 (125)
T Consensus 136 ~w~~~~~~~~~~l~~~~~~pv~~cGD~NvAh~eiDl~~P~~NRKr~l~~~~~gF~~~ER~~~~~ll~~ggf~DtFR~~~p 215 (279)
T TIGR00633 136 FWEALLQYYLKELDASDGKPVIICGDLNVAHTEIDLANPKENRKRWLRKGNAGFTPEEREAFDELLEAGGFVDTFRHFNP 215 (279)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999999986179997999847788977112457750247998818898788999999999861796487036588
Q ss_pred CC-CCCCCCCCCC-CCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 76-7687103887-5543335521012100257321--1543024741125867887564999996
Q gi|254780995|r 58 EK-ESTCNVIKRN-KSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119 (125)
Q Consensus 58 ~~-~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125)
T Consensus 216 ~~~~~YTwW~YR~K~ar~~N~--GWRiDy~l~s~~l~~~v~d~~I~~~~rg~ekPSDHcPi~l~~~ 279 (279)
T TIGR00633 216 DTEGAYTWWDYRSKRARDRNR--GWRIDYFLVSEPLAARVVDSYIDSEVRGMEKPSDHCPIVLELD 279 (279)
T ss_pred CCCCCEEEEECCCCCCCCCCC--CCEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEEC
T ss_conf 879731254002367724673--4145326538689986510001303452788887355477759