HHsearch alignment of GI: 254780995 and MMDB domain: 2j63_A_1-134_233-439
>2j63_A (A:1-134,A:233-439) AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.50 E-value=2.4e-07 Score=59.12 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=44.7
Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCH-------------------HHHHCCCCC---CCHHHCCC-CCCCCCCCCCCCCCC
Q ss_conf 1169988999614777688310027-------------------876326554---10000257-676871038875543
Q gi|254780995|r 17 IKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG---LLIRFPQE-KESTCNVIKRNKSSL 73 (125)
Q Consensus 17 ~~~~~pvIi~GDFN~~~~~~~~~~~-------------------~~~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 73 (125)
...+.|+|+|||||+.+.+.+.++. +.+.|.+.+ .++...++ ...++||.++...+.
T Consensus 246 ~~~gkpVIl~GDfNVAp~diDv~~~~~~k~~~~~~g~tpeER~~l~~lL~~~GlVDvFR~lhPd~~~~YTWWsyr~~ar~ 325 (341)
T 2j63_A 246 GSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRP 325 (341)
T ss_dssp -CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTTT
T ss_pred HCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 04677558715602454101211012220125777779899999999997679898123007998997078388778554
Q ss_pred CCCCCCCHHHHCCCCCC
Q ss_conf 33552101210025732
Q gi|254780995|r 74 DYFVIDRDNKNFLIDNS 90 (125)
Q Consensus 74 d~~~~~~~~~~~~~~~~ 90 (125)
.. .+.|||++++++.
T Consensus 326 kN--~G~RIDYiLvS~~ 340 (341)
T 2j63_A 326 RN--LGWRLDYFVVSSR 340 (341)
T ss_dssp TT--CCBCCEEEEEEGG
T ss_pred CC--CCCCCEEEEECHH
T ss_conf 79--8562248997779