HHsearch results for GI: 254780995 and protein with PDBid: 1ako_A
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.40 E-value=3.7e-13 Score=89.36 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------------HHHCCCCCC----CHHHCCCCCC
Q ss_conf 999999998511699889996147776883100278---------------------763265541----0000257676
Q gi|254780995|r 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPDGL----LIRFPQEKES 61 (125)
Q Consensus 7 ~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------------~~~l~~~~~----~~~~~~~~~~ 61 (125)
+.+...+.+..+.+.|+|++||||..+...+..... ...+...+. ....+.....
T Consensus 130 ~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~~~~~~~ 209 (268)
T 1ako_A 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADR 209 (268)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCC
T ss_conf 99999999987379976863452348417653373540112102576566878999999997489787714326887875
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 8710388755433355210121002573211--543024741125867887564999996
Q gi|254780995|r 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYD 119 (125)
Q Consensus 62 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125)
+++|..+...+.. ..+.|||++++++++. +....+.........+||||||+++|.
T Consensus 210 ~~~~~~~~~~~~~--~~g~RIDyil~S~~l~~~~~~~~i~~~~~~~~~~SDH~PV~~~~r 267 (268)
T 1ako_A 210 FSWFDYRSKGFDD--NRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp CSBCCTTTTHHHH--TCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred CEECCCCCCCCCC--CCCEEEEEEEECHHHHHHHEEEEEEHHHCCCCCCCCCCCEEEEEE
T ss_conf 2004676776447--986785799978799734128887566418999998544799997