HHsearch results for GI: 254780995 and protein with PDBid: 1ako_A

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.40  E-value=3.7e-13  Score=89.36  Aligned_cols=111  Identities=18%  Similarity=0.132  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------------HHHCCCCCC----CHHHCCCCCC
Q ss_conf             999999998511699889996147776883100278---------------------763265541----0000257676
Q gi|254780995|r    7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPDGL----LIRFPQEKES   61 (125)
Q Consensus         7 ~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------------~~~l~~~~~----~~~~~~~~~~   61 (125)
                      +.+...+.+..+.+.|+|++||||..+...+.....                     ...+...+.    ....+.....
T Consensus       130 ~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~~~~~~~  209 (268)
T 1ako_A          130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADR  209 (268)
T ss_dssp             HHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSC
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCC
T ss_conf             99999999987379976863452348417653373540112102576566878999999997489787714326887875


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             8710388755433355210121002573211--543024741125867887564999996
Q gi|254780995|r   62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        62 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~  119 (125)
                      +++|..+...+..  ..+.|||++++++++.  +....+.........+||||||+++|.
T Consensus       210 ~~~~~~~~~~~~~--~~g~RIDyil~S~~l~~~~~~~~i~~~~~~~~~~SDH~PV~~~~r  267 (268)
T 1ako_A          210 FSWFDYRSKGFDD--NRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             CSBCCTTTTHHHH--TCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred             CEECCCCCCCCCC--CCCEEEEEEEECHHHHHHHEEEEEEHHHCCCCCCCCCCCEEEEEE
T ss_conf             2004676776447--986785799978799734128887566418999998544799997