HHsearch results for GI: 254780995 and protein with PDBid: 1hd7_A
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=99.33 E-value=2.8e-12 Score=84.67 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=55.3
Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCHH----------------HHHCCCCCC---C-HHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11699889996147776883100278----------------763265541---0-000257676871038875543335
Q gi|254780995|r 17 IKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGL---L-IRFPQEKESTCNVIKRNKSSLDYF 76 (125)
Q Consensus 17 ~~~~~pvIi~GDFN~~~~~~~~~~~~----------------~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~d~~ 76 (125)
.....|+|++||||..+.+....+.. ...+...+. + ...+.....+|||+++...+. .
T Consensus 199 ~~~~~~~i~~Gd~N~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~gl~D~~r~~~p~~~~~yT~ws~~~~~~~--~ 276 (318)
T 1hd7_A 199 LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS--K 276 (318)
T ss_dssp HHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHH--H
T ss_pred HCCCCEEEEECCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCCCCC--C
T ss_conf 04643388604444587366414855512322341466778999985257642002015899995500066567653--7
Q ss_pred CCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 5210121002573211--5430247411258678875649999961
Q gi|254780995|r 77 VIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125)
..+.|||+++++..+. +..+.+. .+.++||||||+++|++
T Consensus 277 n~g~RIDyilvS~~l~~~v~~~~i~----~~~~~SDH~PV~l~L~l 318 (318)
T 1hd7_A 277 NVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL 318 (318)
T ss_dssp TCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC
T ss_pred CCCEEEEEEEECHHHHHHCCEEEEC----CCCCCCCCCCEEEEEEC
T ss_conf 9865658999685898233178985----89999984168999969