HHsearch results for GI: 254780995 and protein with PDBid: 1sr4_B
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.27 E-value=1.9e-12 Score=85.64 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999999999851169988999614777688310027876326554100002576768710388755433355210121
Q gi|254780995|r 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83 (125)
Q Consensus 4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 83 (125)
++...+..+.......+.|+|+|||||..+.+... ..+...+......... .+++++.....+||++++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~t~~~~~~iD~i~~~~~~~ 225 (261)
T 1sr4_B 153 NIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLEV-----ALRQEPAVSENTIIIA--PTEPTHRSGNILDYAILHDAHL 225 (261)
T ss_dssp HHHHHHHC---CGGGGGCEEEEEEECSSCHHHHHH-----HHTTSHHHHHTCEEEC--CSSCSBTTSCCCEEEEEECTTS
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH-----HHHHHCCCCCCEEECC--CCCCCCCCCCCEEEEEECCCCC
T ss_conf 99999999998752568876984345887521578-----9876135544132047--7778569898574899767010
Q ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 00257321154302474112586788756499999
Q gi|254780995|r 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118 (125)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l 118 (125)
.......... .............+||||||...+
T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~~~~SDH~PV~~~~ 259 (261)
T 1sr4_B 226 PRREQARERI-GASLMLNQLRSQITSDHFPVSFVR 259 (261)
T ss_dssp CTTCGGGCCE-EEEECGGGCSSCCSSSBCCEEEEE
T ss_pred CEEECCCCCE-EEEEECCCCCCCCCCCCHHHEEEE
T ss_conf 3032144202-334412334799628765038884