HHsearch results for GI: 254780995 and protein with PDBid: 1sr4_B

>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.27  E-value=1.9e-12  Score=85.64  Aligned_cols=107  Identities=13%  Similarity=0.065  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99999999999851169988999614777688310027876326554100002576768710388755433355210121
Q gi|254780995|r    4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK   83 (125)
Q Consensus         4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   83 (125)
                      ++...+..+.......+.|+|+|||||..+.+...     ..+...+.........  .+++++.....+||++++....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~t~~~~~~iD~i~~~~~~~  225 (261)
T 1sr4_B          153 NIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLEV-----ALRQEPAVSENTIIIA--PTEPTHRSGNILDYAILHDAHL  225 (261)
T ss_dssp             HHHHHHHC---CGGGGGCEEEEEEECSSCHHHHHH-----HHTTSHHHHHTCEEEC--CSSCSBTTSCCCEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH-----HHHHHCCCCCCEEECC--CCCCCCCCCCCEEEEEECCCCC
T ss_conf             99999999998752568876984345887521578-----9876135544132047--7778569898574899767010


Q ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             00257321154302474112586788756499999
Q gi|254780995|r   84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY  118 (125)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l  118 (125)
                      .......... .............+||||||...+
T Consensus       226 ~~~~~~~~~~-~~~~~~~~~~~~~~SDH~PV~~~~  259 (261)
T 1sr4_B          226 PRREQARERI-GASLMLNQLRSQITSDHFPVSFVR  259 (261)
T ss_dssp             CTTCGGGCCE-EEEECGGGCSSCCSSSBCCEEEEE
T ss_pred             CEEECCCCCE-EEEEECCCCCCCCCCCCHHHEEEE
T ss_conf             3032144202-334412334799628765038884