HHsearch results for GI: 254780995 and protein with PDBid: 2ei9_A
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.63 E-value=7.6e-08 Score=60.95 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-----------CHHHHHC---CCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 9999999998511699889996147776883100-----------2787632---6554100002576768710388755
Q gi|254780995|r 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------DDFWQKM---DPDGLLIRFPQEKESTCNVIKRNKS 71 (125)
Q Consensus 6 ~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~-----------~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125)
.+.+...+.. ..+.++||+||||.....-... +.....+ ................++...+...
T Consensus 107 ~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~Tf~~~~~~~ 184 (240)
T 2ei9_A 107 LHRLGNILDR--LRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGES 184 (240)
T ss_dssp HHHHHHHHHH--TTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHTTCEECCCTTCCCSEEETTEEE
T ss_pred HHHHHHHHHH--CCCCCEEEECHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCEECCCCCCCC
T ss_conf 9999999986--69996698301104560004654344455554423355688765315517731578820166899887
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 433355210121002573211543024741125867887564999996164
Q gi|254780995|r 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125)
Q Consensus 72 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125)
.+|+ ++++..+.+..+.+.. ...|||+||++++....
T Consensus 185 ~ID~---------~~~s~~~~~~~~~v~~-----~~~SDH~~I~~~l~~~~ 221 (240)
T 2ei9_A 185 YVDV---------TLSTRGVRVSEWRVTN-----ESSSDHRLIVFGVGGGT 221 (240)
T ss_dssp CCEE---------EEECTTCCEEEEEECS-----CCSSSBCCEEEEEEC--
T ss_pred EECE---------EEECCCEEEEEEEECC-----CCCCCCHHEEEEEECCC
T ss_conf 8464---------9807970166589668-----99999545699997787