Query         gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs    109 out of 919
Neff          9.4 
Searched_HMMs 23785
Date          Wed Jun  1 00:22:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780995.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2j63_A AP-endonuclease; base e  99.6 3.1E-15 1.3E-19  100.5   8.7   98   18-121   345-467 (467)
  2 3l1w_A Uncharacterized protein  99.5 1.2E-14 5.2E-19   97.3   7.4  112    3-122   142-253 (257)
  3 3g6s_A Putative endonuclease/e  99.5 1.3E-13 5.3E-18   91.9   8.5  113    4-122   149-262 (267)
  4 3mpr_A Putative endonuclease/e  99.4 2.9E-13 1.2E-17   90.0   7.9  111    4-123   153-292 (298)
  5 2ddr_A Sphingomyelin phosphodi  99.4 2.1E-13 8.9E-18   90.7   6.8  118    3-121   169-306 (306)
  6 3i41_A Beta-hemolysin; beta to  99.4 6.2E-13 2.6E-17   88.2   8.9  117    3-119   188-317 (317)
  7 1ako_A Exonuclease III; AP-end  99.4 3.7E-13 1.6E-17   89.4   6.7  111    7-119   130-267 (268)
  8 1zwx_A SMCL, sphingomyelinase-  99.4   9E-13 3.8E-17   87.3   7.8  112    4-116   170-296 (301)
  9 3ngq_A CCR4-NOT transcription   99.4 8.9E-13 3.8E-17   87.3   7.6  119    3-124   215-385 (398)
 10 2jc4_A Exodeoxyribonuclease II  99.4 9.8E-13 4.1E-17   87.1   7.6  112    7-120   125-256 (256)
 11 2a40_B Deoxyribonuclease-1; WA  99.4 6.1E-13 2.6E-17   88.2   5.9  113    5-119   143-260 (260)
 12 1hd7_A DNA-(apurinic or apyrim  99.3 2.8E-12 1.2E-16   84.7   7.6   98   17-120   199-318 (318)
 13 1sr4_B CDT B, cytolethal diste  99.3 1.9E-12 7.8E-17   85.6   4.0  107    4-118   153-259 (261)
 14 2voa_A AF_EXO, XTHA, exodeoxyr  99.2 5.2E-11 2.2E-15   77.9   8.8  105   15-120   133-257 (257)
 15 2f1n_A CDT B, cytolethal diste  99.1 1.1E-11 4.4E-16   81.6   2.9   88   17-118   174-261 (262)
 16 3g91_A MTH0212, exodeoxyribonu  99.1 3.5E-10 1.5E-14   73.4  10.5  113    5-123   128-260 (265)
 17 2o3h_A DNA-(apurinic or apyrim  99.1 1.8E-10 7.4E-15   75.0   9.0  100   15-120   164-285 (285)
 18 1wdu_A TRAS1 ORF2P; four-layer  99.1 2.3E-10 9.5E-15   74.5   6.3   93   17-122   143-245 (245)
 19 1vyb_A ORF2 contains A reverse  99.0 1.9E-09 7.9E-14   69.5   8.8   99    9-119   125-238 (238)
 20 2imq_X Salivary nitrophorin; f  99.0 5.5E-10 2.3E-14   72.4   5.9  100   16-121   159-281 (282)
 21 3mtc_A Type II inositol-1,4,5-  99.0 9.4E-10 3.9E-14   71.2   6.8   22   18-39    180-201 (313)
 22 3nr8_B Phosphatidylinositol-3,  98.9 6.1E-09 2.6E-13   66.8   8.4  103   18-124   181-315 (316)
 23 1i9z_A Synaptojanin, phosphati  98.8 6.8E-09 2.9E-13   66.6   5.7   98   17-121   196-316 (347)
 24 2ei9_A Non-LTR retrotransposon  98.6 7.6E-08 3.2E-12   61.0   7.1  101    6-122   107-221 (240)
 25 2xsw_A 72 kDa inositol polypho  98.5 1.2E-07 4.9E-12   60.0   6.2   18  104-121   304-321 (357)
 26 2jc5_A Exodeoxyribonuclease; h  98.5 2.9E-07 1.2E-11   57.9   7.4   38   81-122   219-258 (259)
 27 1xfk_A Formimidoylglutamase; f  34.9      23 0.00098   15.6   2.8   31    2-32    100-130 (336)
 28 3nme_A Ptpkis1 protein, SEX4 g  20.8      31  0.0013   14.9   1.4   16   19-34    180-195 (294)

No 1  
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.59  E-value=3.1e-15  Score=100.46  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCH-------------------HHHHCCCCC---CCHHH-CCCCCCCCCCCCCCCCCCC
Q ss_conf             169988999614777688310027-------------------876326554---10000-2576768710388755433
Q gi|254780995|r   18 KTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG---LLIRF-PQEKESTCNVIKRNKSSLD   74 (125)
Q Consensus        18 ~~~~pvIi~GDFN~~~~~~~~~~~-------------------~~~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~d   74 (125)
                      ..+.|+|||||||+.+.+.+.+..                   +.+.+...+   .++.. +.....+|||..+...+..
T Consensus       345 ~~~~~vIl~GDfNv~~~~~D~~~~~~~~~~~~~~g~~~eER~~~~~~l~~~glvDafR~~hP~~~~~YT~W~~r~~~r~~  424 (467)
T 2j63_A          345 SSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPR  424 (467)
T ss_dssp             CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTTTT
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             25774687244355752110222232430367877898999999999986798994430359989983882877784325


Q ss_pred             CCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             35521012100257321--154302474112586788756499999616
Q gi|254780995|r   75 YFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDFE  121 (125)
Q Consensus        75 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~  121 (125)
                        ..+.|||+++++..+  ++..+.+.    ...++||||||+++|.|.
T Consensus       425 --n~G~RIDyilvS~~L~~~V~~~~I~----~~~~gSDH~PV~l~Lr~p  467 (467)
T 2j63_A          425 --NLGWRLDYFVVSSRLASYVVDCFPM----PTVMGSDHCPFQMWMRHP  467 (467)
T ss_dssp             --TCCBCCEEEEEEGGGGGGEEEEEEC----TTCCSSSBCCEEEEEECC
T ss_pred             --CCCEEEEEEEECHHHHHHCEEEEEC----CCCCCCCCCCEEEEEECC
T ss_conf             --9866025999776997023089986----899968804649998689


No 2  
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.54  E-value=1.2e-14  Score=97.25  Aligned_cols=112  Identities=11%  Similarity=-0.017  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             89999999999985116998899961477768831002787632655410000257676871038875543335521012
Q gi|254780995|r    3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN   82 (125)
Q Consensus         3 ~~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   82 (125)
                      .+|++.+..++.. ...+.|+|++||||..+....... ..+.+.+ ... .........+++.......   .....+|
T Consensus       142 ~~~~~~~~~~~~~-~~~~~~~iv~GDfN~~~~~~~~~~-~~~~~~d-~~~-~~~~~~~~~~~~~~~~~~~---~~~~~rI  214 (257)
T 3l1w_A          142 LAGMTVILEELHD-KIAQYPTLLMGDFNAESGEEVHQL-VQKKFQD-SKN-LATHYGPRGTFQNFTYTKP---WAELEEI  214 (257)
T ss_dssp             HHHHHHHHHHTHH-HHHHSCEEEEEECCCCTTSHHHHH-HTTTCEE-GGG-TSEEESCSCCBCTTCTTCC---GGGCBCC
T ss_pred             HHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCHHHHHH-HHHHCCH-HHH-HCCCCCCCCCCCCCCCCCC---CCCCCEE
T ss_conf             9999998889985-477897688345688743058999-8732504-455-2055688664256556677---7889407


Q ss_pred             HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             1002573211543024741125867887564999996164
Q gi|254780995|r   83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK  122 (125)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~  122 (125)
                      |++++++ ..+....+......+..+|||+||+++|+|+-
T Consensus       215 D~i~~s~-~~~~~~~~~~~~~~~~~~SDH~PV~a~~~~k~  253 (257)
T 3l1w_A          215 DYIYVKG-WQVQQTASLTDSIDGRFPSDHFPLEAEVAGEN  253 (257)
T ss_dssp             EEEEEES-EEEEEEEECCCCBTTBCSSSBCCEEEEEEEC-
T ss_pred             EEEEEEC-CEEEEEEEECCCCCCCCCCCCCCEEEEEEEEC
T ss_conf             8999838-83579999488768998785416899999302


No 3  
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.47  E-value=1.3e-13  Score=91.89  Aligned_cols=113  Identities=13%  Similarity=-0.017  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHC-CCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999999999851169988999614777688310027876326554100002-57676871038875543335521012
Q gi|254780995|r    4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP-QEKESTCNVIKRNKSSLDYFVIDRDN   82 (125)
Q Consensus         4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~   82 (125)
                      +|...+.++.. ....+.|+|++||||..+.+..................... ......+++.....    ....+.+|
T Consensus       149 ~~~~~~~~~~~-~~~~~~~~i~~GDfN~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ri  223 (267)
T 3g6s_A          149 QSALLIIRKIK-EIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARI----PAEDCEKI  223 (267)
T ss_dssp             HHHHHHHHHHH-HHTTTSCEEEEEECSSCTTSHHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTS----CGGGCCCC
T ss_pred             HHHHHHHHHHH-HHCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCE
T ss_conf             99999998765-30268972132667889766899999853654201233213455567643787766----77888417


Q ss_pred             HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             1002573211543024741125867887564999996164
Q gi|254780995|r   83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK  122 (125)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~  122 (125)
                      |++++++++++..+.+.... .+..+|||+||+++|++|.
T Consensus       224 D~I~~s~~l~~~~~~v~~~~-~~~~~SDH~PV~~~~~lk~  262 (267)
T 3g6s_A          224 DFIFVTPQVLVKSCEIPAEV-PEALLSDHNPQLADLELEH  262 (267)
T ss_dssp             EEEEECTTSEEEEEEECCCC-SSSCCCSBCCEEEEEEEC-
T ss_pred             EEEEECCCEEEEEEEECCCC-CCCCCCCCCCEEEEEEEEE
T ss_conf             79998899479999975788-9998785420489999995


No 4  
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.43  E-value=2.9e-13  Score=89.96  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHH-HHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCC----CCCCCCCCCCC
Q ss_conf             999999999998-5116998899961477768831002787632655410000257676871038----87554333552
Q gi|254780995|r    4 QQGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK----RNKSSLDYFVI   78 (125)
Q Consensus         4 ~Q~~~L~~~i~~-~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~   78 (125)
                      ++++.....+.. ....+.|+|+|||||..+.+.............+............++++..    ....++|||++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~~~~~~~~~~~riDyI~~  232 (298)
T 3mpr_A          153 ESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPNSFTESRIDHIFV  232 (298)
T ss_dssp             HHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTSSSEEHHHHCSEEECSSCSBCTTCTTCCCSCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             99888888886530257887897073498988366765543020355787616567898875544678888861568996


Q ss_pred             CCHHHHCCCCCCCEEEEECCC------------------------CCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             101210025732115430247------------------------411258678875649999961646
Q gi|254780995|r   79 DRDNKNFLIDNSFSIVSYDQS------------------------DLDTRRSKLSTHCPLTIEYDFEKG  123 (125)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~SDH~PV~~~l~f~~~  123 (125)
                      ++         ++.+..+.+.                        ........+|||+||+++|+|+.-
T Consensus       233 s~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~~~~~~  292 (298)
T 3mpr_A          233 SP---------SFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDLE  292 (298)
T ss_dssp             CT---------TSEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEECSS
T ss_pred             CC---------CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf             79---------7404678996044323222223444444322234456788997842208999999376


No 5  
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.43  E-value=2.1e-13  Score=90.68  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHH-----HHHCCCCCCCHH---HCCCCCCCC----CCCCCC
Q ss_conf             899999999999851-1699889996147776883100278-----763265541000---025767687----103887
Q gi|254780995|r    3 SQQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDF-----WQKMDPDGLLIR---FPQEKESTC----NVIKRN   69 (125)
Q Consensus         3 ~~Q~~~L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~~~-----~~~l~~~~~~~~---~~~~~~~~~----~~~~~~   69 (125)
                      .+|+..+..++.++. ..+.|+|+|||||..+.+.......     ...+........   .........    ......
T Consensus       169 ~~q~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~  248 (306)
T 2ddr_A          169 TNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSP  248 (306)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHHHHTBCCCEEEECSCSBCTTTCHHHHHHCTTSC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999877666542134688579971467886642230137888898763444322257886526655655565657898


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEE-------CCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             554333552101210025732115430-------2474112586788756499999616
Q gi|254780995|r   70 KSSLDYFVIDRDNKNFLIDNSFSIVSY-------DQSDLDTRRSKLSTHCPLTIEYDFE  121 (125)
Q Consensus        70 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~SDH~PV~~~l~f~  121 (125)
                      ...+|||++++......... ..+...       ...........+|||+||+++|+++
T Consensus       249 ~~riDyI~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~~~lk  306 (306)
T 2ddr_A          249 AEYLDYIIASKDHANPSYIE-NKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISMK  306 (306)
T ss_dssp             CBCCEEEEEBTTSCCCSEEE-EEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC-
T ss_pred             CCEEEEEEEECCCCCCCEEE-EEEEECCCCCCEECCCCCCCCCCCCCCCHHEEEEEEEC
T ss_conf             85688999786203752220-05761144431001223577889988614269999979


No 6  
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=99.42  E-value=6.2e-13  Score=88.17  Aligned_cols=117  Identities=16%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHC--CCCCCCCCC----CCCCCCCCCC
Q ss_conf             899999999999851-169988999614777688310027876326554100002--576768710----3887554333
Q gi|254780995|r    3 SQQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--QEKESTCNV----IKRNKSSLDY   75 (125)
Q Consensus         3 ~~Q~~~L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~----~~~~~~~~d~   75 (125)
                      .+|++.+..++..+. ..+.|+|+|||||..+.+..........-..+.......  ......+++    ......++||
T Consensus       188 ~~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~riDy  267 (317)
T 3i41_A          188 AEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDY  267 (317)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHHHHTBCCCEEEECSCSBCTTTCHHHHHHCTTCCCBCCEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999999866554014667579844478898877999999866986530014776545765765565657898714889


Q ss_pred             CCCCCHHHHCCCCCCCEEE------EECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             5521012100257321154------3024741125867887564999996
Q gi|254780995|r   76 FVIDRDNKNFLIDNSFSIV------SYDQSDLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~SDH~PV~~~l~  119 (125)
                      |++++..............      .............+|||+||++-+.
T Consensus       268 I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~~  317 (317)
T 3i41_A          268 IFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYSK  317 (317)
T ss_dssp             EEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEEC
T ss_pred             EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             99757402643110048862366310124445677899676106489939


No 7  
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.40  E-value=3.7e-13  Score=89.36  Aligned_cols=111  Identities=18%  Similarity=0.132  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------------HHHCCCCCC----CHHHCCCCCC
Q ss_conf             999999998511699889996147776883100278---------------------763265541----0000257676
Q gi|254780995|r    7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPDGL----LIRFPQEKES   61 (125)
Q Consensus         7 ~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------------~~~l~~~~~----~~~~~~~~~~   61 (125)
                      +.+...+.+..+.+.|+|++||||..+...+.....                     ...+...+.    ....+.....
T Consensus       130 ~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~~~~~~~  209 (268)
T 1ako_A          130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADR  209 (268)
T ss_dssp             HHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSC
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCC
T ss_conf             99999999987379976863452348417653373540112102576566878999999997489787714326887875


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             8710388755433355210121002573211--543024741125867887564999996
Q gi|254780995|r   62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        62 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~  119 (125)
                      +++|..+...+..  ..+.|||++++++++.  +....+.........+||||||+++|.
T Consensus       210 ~~~~~~~~~~~~~--~~g~RIDyil~S~~l~~~~~~~~i~~~~~~~~~~SDH~PV~~~~r  267 (268)
T 1ako_A          210 FSWFDYRSKGFDD--NRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             CSBCCTTTTHHHH--TCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred             CEECCCCCCCCCC--CCCEEEEEEEECHHHHHHHEEEEEEHHHCCCCCCCCCCCEEEEEE
T ss_conf             2004676776447--986785799978799734128887566418999998544799997


No 8  
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.38  E-value=9e-13  Score=87.31  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCC----CCC----CCCCCCCCCCC
Q ss_conf             99999999999851-1699889996147776883100278763265541000025767----687----10388755433
Q gi|254780995|r    4 QQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STC----NVIKRNKSSLD   74 (125)
Q Consensus         4 ~Q~~~L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~----~~~~~~~~~~d   74 (125)
                      .|++.+.+|+.+.. +.+.|+|||||||..+.+....... +.+..............    ..+    .....++.++|
T Consensus       170 ~q~~~~~~~l~~~~~~~~~~vii~GDfN~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD  248 (301)
T 1zwx_A          170 EQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDML-KLLNVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYLD  248 (301)
T ss_dssp             HHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHH-HHHTBCCCTTCCTTSCSBCTTTCHHHHHHCTTSCCBCCE
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             9999977543320146751599984669898867999999-755876410025777753442245556565689984488


Q ss_pred             CCCCCCHHHHCCCCCCCEEEE------ECCCCCCCCCCCCCCCCCEEE
Q ss_conf             355210121002573211543------024741125867887564999
Q gi|254780995|r   75 YFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTHCPLTI  116 (125)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~  116 (125)
                      |+++++...............      ............+|||+||++
T Consensus       249 yI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PVvA  296 (301)
T 1zwx_A          249 YIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVG  296 (301)
T ss_dssp             EEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEE
T ss_pred             EEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             999847414543212048862266421134445688899487205589


No 9  
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.38  E-value=8.9e-13  Score=87.33  Aligned_cols=119  Identities=13%  Similarity=0.023  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHH-------------CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCH----------------
Q ss_conf             899999999999851-------------169988999614777688310027876326554100----------------
Q gi|254780995|r    3 SQQGEWLKKWADQKI-------------KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI----------------   53 (125)
Q Consensus         3 ~~Q~~~L~~~i~~~~-------------~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~----------------   53 (125)
                      .+|++.|.++++...             ..+.|+|++||||..+.+..+.......+.. ....                
T Consensus       215 ~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  293 (398)
T 3ngq_A          215 LIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVAD-NHKDFKELRYNECLMNFSCN  293 (398)
T ss_dssp             HHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSHHHHHHHHTEEET-TCGGGCC-----GGGGGCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCC-CCHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999999987665320123445687448714546787647899987089774-31034440344444445655


Q ss_pred             ------------------HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCC-----CCCCCCCCCCC
Q ss_conf             ------------------0025767687103887554333552101210025732115430247-----41125867887
Q gi|254780995|r   54 ------------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLST  110 (125)
Q Consensus        54 ------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~SD  110 (125)
                                        ........++.+.......+|||+++......  ............     .......++||
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~riDyI~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~SD  371 (398)
T 3ngq_A          294 GKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKTHMNV--EGVLGPLDPQWLVENNITGCPHPHIPSD  371 (398)
T ss_dssp             ------CCEEECSCCEEETTTTTSSSCSEECSSCEECCEEEEEETTTEEE--EEEECCCCHHHHHHTTCCSSCBTTBCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCE--EEEECCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             43344664445676554334578787520249989538899973764634--4420567778712000257778899885


Q ss_pred             CCCEEEEEECCCCC
Q ss_conf             56499999616468
Q gi|254780995|r  111 HCPLTIEYDFEKGN  124 (125)
Q Consensus       111 H~PV~~~l~f~~~~  124 (125)
                      |+||+++|+|+-.+
T Consensus       372 H~pV~a~~~l~~~~  385 (398)
T 3ngq_A          372 HFSLLTQLELHPPL  385 (398)
T ss_dssp             BCCEEEEEEECCC-
T ss_pred             CHHEEEEEEECCCC
T ss_conf             14079999971899


No 10 
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.38  E-value=9.8e-13  Score=87.11  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCH---------------HHHHCCCCCC---CHHHCCCCCCCCCCCCC
Q ss_conf             99999999851169988999614777688310027---------------8763265541---00002576768710388
Q gi|254780995|r    7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL---LIRFPQEKESTCNVIKR   68 (125)
Q Consensus         7 ~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~---------------~~~~l~~~~~---~~~~~~~~~~~~~~~~~   68 (125)
                      ..+.++..+....+.|++++||||..+.+.....+               ....+...+.   .....++....+++...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  204 (256)
T 2jc4_A          125 AALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYR  204 (256)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTT
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             99998888762248874303432358648776073430145458989999887543157389887613898763257876


Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             75543335521012100257321--15430247411258678875649999961
Q gi|254780995|r   69 NKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF  120 (125)
Q Consensus        69 ~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  120 (125)
                      .....  ...+.|||++++++++  ++....+.........+|||+||+++|+|
T Consensus       205 ~~~~~--~~~g~RIDyI~~S~~l~~~v~~~~v~~~~~~~~~~SDH~PV~~~l~~  256 (256)
T 2jc4_A          205 GAMFQ--RKLGLRIDHILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW  256 (256)
T ss_dssp             TTHHH--HTCCBCCEEEEECHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEECC
T ss_pred             CCCCC--CCCCEEEEEEEECHHHHHHCEEEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf             77241--68854668999685997332699997312479999982268999969


No 11 
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.36  E-value=6.1e-13  Score=88.22  Aligned_cols=113  Identities=11%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHH--HHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999999998--5116998899961477768831002787632655410000257676871038875543335521012
Q gi|254780995|r    5 QGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN   82 (125)
Q Consensus         5 Q~~~L~~~i~~--~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   82 (125)
                      +++++.++++.  +...+.|+|+|||||..+.+......................  ...++........+||+++++.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~iD~i~~s~~~  220 (260)
T 2a40_B          143 EINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIP--DSADTTATSTNCAYDRIVVAGSL  220 (260)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGGGCHHHHSTTEEESSC--TTCCCBSSSCCCCCEEEEEESHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEECHHH
T ss_conf             9999999999998636588889946666677752578898613522222112478--88853347989860499976168


Q ss_pred             H-HCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEEE
Q ss_conf             1-0025732115430247--41125867887564999996
Q gi|254780995|r   83 K-NFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        83 ~-~~~~~~~~~~~~~~~~--~~~~~~~~~SDH~PV~~~l~  119 (125)
                      . ......+..+..+...  .......++|||+||+++|.
T Consensus       221 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~ls  260 (260)
T 2a40_B          221 LQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT  260 (260)
T ss_dssp             HHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred             HCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             3662714702675131102566345897187558899979


No 12 
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=99.33  E-value=2.8e-12  Score=84.67  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCHH----------------HHHCCCCCC---C-HHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11699889996147776883100278----------------763265541---0-000257676871038875543335
Q gi|254780995|r   17 IKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGL---L-IRFPQEKESTCNVIKRNKSSLDYF   76 (125)
Q Consensus        17 ~~~~~pvIi~GDFN~~~~~~~~~~~~----------------~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~d~~   76 (125)
                      .....|+|++||||..+.+....+..                ...+...+.   + ...+.....+|||+++...+.  .
T Consensus       199 ~~~~~~~i~~Gd~N~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~gl~D~~r~~~p~~~~~yT~ws~~~~~~~--~  276 (318)
T 1hd7_A          199 LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS--K  276 (318)
T ss_dssp             HHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHH--H
T ss_pred             HCCCCEEEEECCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCCCCC--C
T ss_conf             04643388604444587366414855512322341466778999985257642002015899995500066567653--7


Q ss_pred             CCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             5210121002573211--5430247411258678875649999961
Q gi|254780995|r   77 VIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYDF  120 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~f  120 (125)
                      ..+.|||+++++..+.  +..+.+.    .+.++||||||+++|++
T Consensus       277 n~g~RIDyilvS~~l~~~v~~~~i~----~~~~~SDH~PV~l~L~l  318 (318)
T 1hd7_A          277 NVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL  318 (318)
T ss_dssp             TCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC
T ss_pred             CCCEEEEEEEECHHHHHHCCEEEEC----CCCCCCCCCCEEEEEEC
T ss_conf             9865658999685898233178985----89999984168999969


No 13 
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.27  E-value=1.9e-12  Score=85.64  Aligned_cols=107  Identities=13%  Similarity=0.065  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99999999999851169988999614777688310027876326554100002576768710388755433355210121
Q gi|254780995|r    4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK   83 (125)
Q Consensus         4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   83 (125)
                      ++...+..+.......+.|+|+|||||..+.+...     ..+...+.........  .+++++.....+||++++....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~t~~~~~~iD~i~~~~~~~  225 (261)
T 1sr4_B          153 NIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLEV-----ALRQEPAVSENTIIIA--PTEPTHRSGNILDYAILHDAHL  225 (261)
T ss_dssp             HHHHHHHC---CGGGGGCEEEEEEECSSCHHHHHH-----HHTTSHHHHHTCEEEC--CSSCSBTTSCCCEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH-----HHHHHCCCCCCEEECC--CCCCCCCCCCCEEEEEECCCCC
T ss_conf             99999999998752568876984345887521578-----9876135544132047--7778569898574899767010


Q ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             00257321154302474112586788756499999
Q gi|254780995|r   84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY  118 (125)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l  118 (125)
                      .......... .............+||||||...+
T Consensus       226 ~~~~~~~~~~-~~~~~~~~~~~~~~SDH~PV~~~~  259 (261)
T 1sr4_B          226 PRREQARERI-GASLMLNQLRSQITSDHFPVSFVR  259 (261)
T ss_dssp             CTTCGGGCCE-EEEECGGGCSSCCSSSBCCEEEEE
T ss_pred             CEEECCCCCE-EEEEECCCCCCCCCCCCHHHEEEE
T ss_conf             3032144202-334412334799628765038884


No 14 
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.21  E-value=5.2e-11  Score=77.87  Aligned_cols=105  Identities=17%  Similarity=0.109  Sum_probs=58.8

Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCHH---------------HHHCCCCCC---CHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8511699889996147776883100278---------------763265541---0000257676871038875543335
Q gi|254780995|r   15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL---LIRFPQEKESTCNVIKRNKSSLDYF   76 (125)
Q Consensus        15 ~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~   76 (125)
                      .....+.+++++||||.........+..               .+.+.+.+.   +....++....++|........ ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~D~~r~~~~~~~~~~~~~~~~~~~~-~~  211 (257)
T 2voa_A          133 KTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAI-ER  211 (257)
T ss_dssp             HHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTTT-TT
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCC-CC
T ss_conf             86642023233331013840643358043346665788999999999876881201543799986310676578743-47


Q ss_pred             CCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             521012100257321--15430247411258678875649999961
Q gi|254780995|r   77 VIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF  120 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  120 (125)
                      ..+.|||++++++++  ++..+.+......+..+|||+||+++|++
T Consensus       212 ~~g~RIDyIl~s~~l~~~~~~~~v~~~~~~~~~~SDH~PV~~~l~i  257 (257)
T 2voa_A          212 GLGWRGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFDV  257 (257)
T ss_dssp             TCCBCCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEECC
T ss_pred             CCCEEEEEEEECHHHHHHHCEEEEEEEECCCCCCCCCEEEEEEEEC
T ss_conf             9967779999786998652089986510479999982379999989


No 15 
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.15  E-value=1.1e-11  Score=81.59  Aligned_cols=88  Identities=16%  Similarity=0.133  Sum_probs=43.8

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEE
Q ss_conf             11699889996147776883100278763265541000025767687103887554333552101210025732115430
Q gi|254780995|r   17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY   96 (125)
Q Consensus        17 ~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   96 (125)
                      ...+.|+|++||||..+.+....-  ...+...  .....+     +..++.....+||+++++.+......-..     
T Consensus       174 ~~~~~~~iv~GDfN~~~~~~~~~~--~~~~~~~--~~~~~~-----~~~t~~~~~riD~i~~s~~~~~~~~~~~~-----  239 (262)
T 2f1n_A          174 VHQALNWMILGDFNREPADLEMNL--TVPVRRA--SEIISP-----AAATQTSQRTLDYAVAGNSVAFRPSPLQA-----  239 (262)
T ss_dssp             HHHTCEEEEEEECSSCHHHHHTTS--CHHHHHT--EEEECC-----SSCSBTTSCCCEEEEEEESSCCCCCCCEE-----
T ss_pred             HCCCCCEEECCCCCCCCHHHHHHH--HHHHHHH--HHHCCC-----CCCCCCCCCEEEEEEECCCHHCCCCEEEE-----
T ss_conf             367997573476465715677766--5343332--031289-----98757999829999980816535213689-----


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             2474112586788756499999
Q gi|254780995|r   97 DQSDLDTRRSKLSTHCPLTIEY  118 (125)
Q Consensus        97 ~~~~~~~~~~~~SDH~PV~~~l  118 (125)
                      .+.........+||||||.++|
T Consensus       240 ~~~~~~~~~~~~SDH~PV~~~~  261 (262)
T 2f1n_A          240 GIVYGARRTQISSDHFPVGVSR  261 (262)
T ss_dssp             EETTTTSCCCCSCSBCCEEEEC
T ss_pred             EEEECCCCCCCCCCCHHEEEEE
T ss_conf             9850335899648854238984


No 16 
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.15  E-value=3.5e-10  Score=73.44  Aligned_cols=113  Identities=16%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------HHHCCCCCC---CHHHCCCCCCCCCCC
Q ss_conf             99999999998511699889996147776883100278---------------763265541---000025767687103
Q gi|254780995|r    5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL---LIRFPQEKESTCNVI   66 (125)
Q Consensus         5 Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------~~~l~~~~~---~~~~~~~~~~~~~~~   66 (125)
                      ....+..........+.+.+++||||.........++.               ...+.+.+.   +.........+++|.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~  207 (265)
T 3g91_A          128 FYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWS  207 (265)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSCCCSBCC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEECC
T ss_conf             99999999999854678467206510287044046866627896899899987653343698101242278999614337


Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             8875543335521012100257321--15430247411258678875649999961646
Q gi|254780995|r   67 KRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG  123 (125)
Q Consensus        67 ~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~~  123 (125)
                      .+......  ..+.|||++++++++  ++..+.+..    +.++||||||+++|++.|-
T Consensus       208 ~~~~~~~~--~~~~RIDyIl~s~~l~~~v~~~~v~~----~~~~SDH~PV~~el~l~~~  260 (265)
T 3g91_A          208 YRTRARER--NVGWRLDYFFVNEEFKGKVKRSWILS----DVMGSDHCPIGLEIELLEH  260 (265)
T ss_dssp             SSTTTTTT--TCCBCCEEEEEEGGGGGGEEEEEECT----TCCSSSBCCEEEEEECCCC
T ss_pred             CCCCCCCC--CCCEEEEEEEECHHHHHHCCEEEECC----CCCCCCCCCEEEEEEECCC
T ss_conf             87887558--99757589997759970244999847----9999992578999991464


No 17 
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.15  E-value=1.8e-10  Score=75.05  Aligned_cols=100  Identities=17%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCH----------------HHHHCCCCCC----CHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             851169988999614777688310027----------------8763265541----00002576768710388755433
Q gi|254780995|r   15 QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL----LIRFPQEKESTCNVIKRNKSSLD   74 (125)
Q Consensus        15 ~~~~~~~pvIi~GDFN~~~~~~~~~~~----------------~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~d   74 (125)
                      .....+.++|++||||..+......+.                +.+.+...+.    ....+.....++||+++...+. 
T Consensus       164 ~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~r~~~p~~~~~yT~~s~~~~~~~-  242 (285)
T 2o3h_A          164 KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS-  242 (285)
T ss_dssp             HHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTHHH-
T ss_pred             HHHCCCCEEEEECCHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCCCC-
T ss_conf             4304654389705111286243204767642002468388888999974147544202424899982675458788452-


Q ss_pred             CCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             355210121002573211--5430247411258678875649999961
Q gi|254780995|r   75 YFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYDF  120 (125)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~f  120 (125)
                       ...+.|||++++++++.  +..+.+.    ...++|||+||+++|++
T Consensus       243 -~~~g~RID~Il~S~~l~~~v~~~~v~----~~~~~SDH~PV~v~L~l  285 (285)
T 2o3h_A          243 -KNVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL  285 (285)
T ss_dssp             -HTCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC
T ss_pred             -CCCCEEEEEEEECHHHHHHCEEEEEC----CCCCCCCCCCEEEEEEC
T ss_conf             -79966768999783897131078987----89999983268999979


No 18 
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.06  E-value=2.3e-10  Score=74.48  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=42.5

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCC--HHHHHCC----CCCCCHHHCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHCC
Q ss_conf             116998899961477768831002--7876326----55410000257676871038----8755433355210121002
Q gi|254780995|r   17 IKTGIPFVIAGDFNRKINSIGDTD--DFWQKMD----PDGLLIRFPQEKESTCNVIK----RNKSSLDYFVIDRDNKNFL   86 (125)
Q Consensus        17 ~~~~~pvIi~GDFN~~~~~~~~~~--~~~~~l~----~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~   86 (125)
                      ...+.|+||+||||..+.+-....  .....+.    ......  .......+++..    .....+||++++..+..  
T Consensus       143 ~~~~~~~Il~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~t~~~~~~~~~~~~rID~i~~s~~l~~--  218 (245)
T 1wdu_A          143 KMGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHI--LNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLD--  218 (245)
T ss_dssp             TTCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEE--CCCSCCCSEEC-----CCEECCEEEEECGGGBT--
T ss_pred             HCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCEEEECCCCCCCCCCCEEEEEECCHHHH--
T ss_conf             5479649997343536544466531000123333444322222--465321012024688888962489998936862--


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             573211543024741125867887564999996164
Q gi|254780995|r   87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK  122 (125)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~  122 (125)
                           .+....+.    .+...|||+||+++|+++|
T Consensus       219 -----~~~~~~v~----~~~~~SDH~pv~~~l~l~k  245 (245)
T 1wdu_A          219 -----LIDGWRVD----EDLVSSDHNGMVFNIRLQK  245 (245)
T ss_dssp             -----TEEEEEEC----TTSSSSSBCCEEEEECCCC
T ss_pred             -----HCEEEEEC----CCCCCCCCCEEEEEEEEEC
T ss_conf             -----14699998----9999999810899999709


No 19 
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.99  E-value=1.9e-09  Score=69.55  Aligned_cols=99  Identities=14%  Similarity=0.177  Sum_probs=49.0

Q ss_pred             HHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCC---------HHHHHCCCCCC---CHHHCCCCCCCCCCCCCCC--CCC
Q ss_conf             999999851-16998899961477768831002---------78763265541---0000257676871038875--543
Q gi|254780995|r    9 LKKWADQKI-KTGIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGL---LIRFPQEKESTCNVIKRNK--SSL   73 (125)
Q Consensus         9 L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~---------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~   73 (125)
                      +.+++.... ..+.|+|++||||..+...+...         .....+...+.   ...........+++.....  .++
T Consensus       125 ~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~r~~~~~~~~~t~~~~~~~~~~rI  204 (238)
T 1vyb_A          125 IKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKI  204 (238)
T ss_dssp             HHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTEEECC
T ss_pred             HHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEE
T ss_conf             88889999863036501101004687455423500021356888998863035531212013687555104788978626


Q ss_pred             CCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             3355210121002573211543024741125867887564999996
Q gi|254780995|r   74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  119 (125)
                      ||++++..+..       ++..+.+.     ...+|||+||+++|.
T Consensus       205 D~i~~s~~~~~-------~~~~~~v~-----~~~~SDH~pv~~~Lk  238 (238)
T 1vyb_A          205 DHIVGSKALLS-------KCKRTEII-----TNYLSDHSAIKLELR  238 (238)
T ss_dssp             EEEEEEGGGGG-------GEEEEEEE-----CCSSSSSCEEEEEEC
T ss_pred             EEEEECCHHHH-------HCCEEEEC-----CCCCCCCCCEEEEEC
T ss_conf             79997847970-------26299968-----997998201899969


No 20 
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.98  E-value=5.5e-10  Score=72.41  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=49.3

Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCHH-------HHH--------CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             511699889996147776883100278-------763--------26554100002576768710388755433355210
Q gi|254780995|r   16 KIKTGIPFVIAGDFNRKINSIGDTDDF-------WQK--------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR   80 (125)
Q Consensus        16 ~~~~~~pvIi~GDFN~~~~~~~~~~~~-------~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   80 (125)
                      ....+.++|++||||..+.........       ...        ......+....+....+++|+++....-.+.  +.
T Consensus       159 ~~~~~d~~i~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~f~~~~e~~~~F~~~~~~~~~~~~~~--~~  236 (282)
T 2imq_X          159 KDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYD--LS  236 (282)
T ss_dssp             SSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBCBCTTSSCBC--TT
T ss_pred             CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf             5777874674366554434221456666420489999874667654222320235368873499512577765467--75


Q ss_pred             HH----HHCCCCCCC----EEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             12----100257321----154302474112586788756499999616
Q gi|254780995|r   81 DN----KNFLIDNSF----SIVSYDQSDLDTRRSKLSTHCPLTIEYDFE  121 (125)
Q Consensus        81 ~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~  121 (125)
                      |+    |+++.++..    +...|    ......++|||+||+++|+++
T Consensus       237 Ripsw~DrIL~s~~~~~~v~~~~y----~~~~~~~~SDH~PV~a~F~v~  281 (282)
T 2imq_X          237 ATPSWTDRALYKSGTGKTIQPLSY----NSLTNYKQTEHRPVLAKFRVT  281 (282)
T ss_dssp             SCCBCCEEEEEECSSSCCEEEEEE----EECTTCCSSSSCCEEEEEEEE
T ss_pred             CCCCCCCEEEEECCCCCCCEEEEE----EECCCCCCCCCCCEEEEEEEE
T ss_conf             267667779978875785389587----778888888890479999997


No 21 
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens}
Probab=98.97  E-value=9.4e-10  Score=71.17  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=17.2

Q ss_pred             CCCCCEEEEEECCCCCCCCCCC
Q ss_conf             1699889996147776883100
Q gi|254780995|r   18 KTGIPFVIAGDFNRKINSIGDT   39 (125)
Q Consensus        18 ~~~~pvIi~GDFN~~~~~~~~~   39 (125)
                      ..+.++|+|||||..+......
T Consensus       180 ~~~~~vi~~GD~N~~~~~~~~~  201 (313)
T 3mtc_A          180 SNHDVILWLGDLNYRIEELDVE  201 (313)
T ss_dssp             TSSSEEEEEEECCCCBCSSCHH
T ss_pred             CCCCEEEEECCCCCCCCCCCHH
T ss_conf             2698699952344245654567


No 22 
>3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens}
Probab=98.89  E-value=6.1e-09  Score=66.83  Aligned_cols=103  Identities=8%  Similarity=-0.047  Sum_probs=48.6

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCHHH------H-------------------HCCCCC-----CCHHHCCCCCCCCCCCC
Q ss_conf             16998899961477768831002787------6-------------------326554-----10000257676871038
Q gi|254780995|r   18 KTGIPFVIAGDFNRKINSIGDTDDFW------Q-------------------KMDPDG-----LLIRFPQEKESTCNVIK   67 (125)
Q Consensus        18 ~~~~pvIi~GDFN~~~~~~~~~~~~~------~-------------------~l~~~~-----~~~~~~~~~~~~~~~~~   67 (125)
                      ..+.++|+|||||..+........-.      .                   .+.+..     ..+........+++|..
T Consensus       181 ~~~~~vi~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~E~~i~F~pTyk~~~~~~~~yt~~~~  260 (316)
T 3nr8_B          181 LRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQ  260 (316)
T ss_dssp             SSSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTSBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCCBC
T ss_pred             CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             24582799665202246531466776234655665426999999861876689722784347873662799987610045


Q ss_pred             CCCCCCCCC-CCCCHHHHCCCCC-CCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             875543335-5210121002573-21154302474112586788756499999616468
Q gi|254780995|r   68 RNKSSLDYF-VIDRDNKNFLIDN-SFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN  124 (125)
Q Consensus        68 ~~~~~~d~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~~~  124 (125)
                      +.......+ -+..||++..... .+.+..|.+.    .....||||||+++|+.+-.+
T Consensus       261 ~~~~~~~r~psw~DRIly~~~~~~~~~~~~y~~~----~~~~~SDH~PV~a~f~v~v~~  315 (316)
T 3nr8_B          261 KPTGVRTNVPSWCDRILWKSYPETHIICNSYGCT----DDIVTSDHSPVFGTFEVGVTS  315 (316)
T ss_dssp             CTTCCBCCCCBCCEEEEEECCTTSCEEEEEEEEC----SSCCSSSSCCEEEEEEEECCC
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEC----CCCCCCCCHHHEEEEEEEEEC
T ss_conf             5774445575346359998996666368899886----899788775338999999716


No 23 
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.78  E-value=6.8e-09  Score=66.56  Aligned_cols=98  Identities=15%  Similarity=0.023  Sum_probs=45.4

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCH----------------HHHHCCCCCCCH-HHCCCCC-CCCCC-CCCCCCCCCCCC
Q ss_conf             1169988999614777688310027----------------876326554100-0025767-68710-388755433355
Q gi|254780995|r   17 IKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLI-RFPQEKE-STCNV-IKRNKSSLDYFV   77 (125)
Q Consensus        17 ~~~~~pvIi~GDFN~~~~~~~~~~~----------------~~~~l~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~d~~~   77 (125)
                      .....++|++||||..++.......                ....+.....+. +.+.... ..+++ ..+...+.  ..
T Consensus       196 ~~~~d~v~~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~dql~~~~~~~~~f~~~~E~~i~F~Ptyk~~~~~~~y~--~~  273 (347)
T 1i9z_A          196 IFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYD--TS  273 (347)
T ss_dssp             TTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBC--CS
T ss_pred             CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf             4577536874364411014516668876516657899875877654124424687428878899983618998667--88


Q ss_pred             CCCHH----HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             21012----100257321154302474112586788756499999616
Q gi|254780995|r   78 IDRDN----KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE  121 (125)
Q Consensus        78 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~  121 (125)
                      .+.|+    |.++..+......|...     ..+.|||+||++.|+++
T Consensus       274 ~~~RiPswcDRIL~~~~~~~~~Y~s~-----~~~~SDH~PV~a~f~~~  316 (347)
T 1i9z_A          274 DKHRVPAWTDRILYRGELVPHSYQSV-----PLYYSDHRPIYATYEAN  316 (347)
T ss_dssp             TTCCCCBCCEEEEEESSCEEEEEEEC-----CCCSSSBCCEEEEEEEE
T ss_pred             CCEECCCCCCEEEEECCCEEEEEECC-----CCCCCCCCCEEEEEEEE
T ss_conf             98367255787985087226576036-----77778854689999999


No 24 
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.63  E-value=7.6e-08  Score=60.95  Aligned_cols=101  Identities=16%  Similarity=0.071  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-----------CHHHHHC---CCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf             9999999998511699889996147776883100-----------2787632---6554100002576768710388755
Q gi|254780995|r    6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------DDFWQKM---DPDGLLIRFPQEKESTCNVIKRNKS   71 (125)
Q Consensus         6 ~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~-----------~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~   71 (125)
                      .+.+...+..  ..+.++||+||||.....-...           +.....+   ................++...+...
T Consensus       107 ~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~Tf~~~~~~~  184 (240)
T 2ei9_A          107 LHRLGNILDR--LRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGES  184 (240)
T ss_dssp             HHHHHHHHHH--TTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHTTCEECCCTTCCCSEEETTEEE
T ss_pred             HHHHHHHHHH--CCCCCEEEECHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCEECCCCCCCC
T ss_conf             9999999986--69996698301104560004654344455554423355688765315517731578820166899887


Q ss_pred             CCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             433355210121002573211543024741125867887564999996164
Q gi|254780995|r   72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK  122 (125)
Q Consensus        72 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~  122 (125)
                      .+|+         ++++..+.+..+.+..     ...|||+||++++....
T Consensus       185 ~ID~---------~~~s~~~~~~~~~v~~-----~~~SDH~~I~~~l~~~~  221 (240)
T 2ei9_A          185 YVDV---------TLSTRGVRVSEWRVTN-----ESSSDHRLIVFGVGGGT  221 (240)
T ss_dssp             CCEE---------EEECTTCCEEEEEECS-----CCSSSBCCEEEEEEC--
T ss_pred             EECE---------EEECCCEEEEEEEECC-----CCCCCCHHEEEEEECCC
T ss_conf             8464---------9807970166589668-----99999545699997787


No 25 
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.55  E-value=1.2e-07  Score=59.98  Aligned_cols=18  Identities=22%  Similarity=0.196  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCEEEEEECC
Q ss_conf             586788756499999616
Q gi|254780995|r  104 RRSKLSTHCPLTIEYDFE  121 (125)
Q Consensus       104 ~~~~~SDH~PV~~~l~f~  121 (125)
                      .....|||+||++.|+++
T Consensus       304 ~~~~~SDH~PV~a~F~v~  321 (357)
T 2xsw_A          304 PGIKTSDHRPVYGLFRVK  321 (357)
T ss_dssp             TTCCSSSSCCEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEEEEE
T ss_conf             887888980168899999


No 26 
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.51  E-value=2.9e-07  Score=57.87  Aligned_cols=38  Identities=26%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             HHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             12100257321--1543024741125867887564999996164
Q gi|254780995|r   81 DNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK  122 (125)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~  122 (125)
                      |||++++++.+  ++..+.+.    ....+|||+||+++|+|.+
T Consensus       219 RIDyIl~s~~l~~~~~~~~v~----~~~~~SDH~Pv~~d~~~~~  258 (259)
T 2jc5_A          219 RIDYQMVTPELAAKAVSAHVY----KDEKFSDHAPLVVEYDYAA  258 (259)
T ss_dssp             CCEEEEECHHHHTTEEEEEEC----CSSCCSSBCCEEEEESCCC
T ss_pred             EEEEEEECHHHHHHCEEEEEC----CCCCCCCCEEEEEEEECCC
T ss_conf             658999671896223499999----9999988300999996789


No 27 
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=34.86  E-value=23  Score=15.58  Aligned_cols=31  Identities=16%  Similarity=0.166  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             7899999999999851169988999614777
Q gi|254780995|r    2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRK   32 (125)
Q Consensus         2 l~~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~   32 (125)
                      +++..+.+.+.+.+-.+.+.|++|.||=...
T Consensus       100 ~~~~~~~i~~~v~~i~~~~~pivLGGdHsis  130 (336)
T 1xfk_A          100 LEQAQQECAQVIQQALPHARAIVLGGGHEIA  130 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEECSSTTHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             9999999999999996489818978765330


No 28 
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=20.82  E-value=31  Score=14.91  Aligned_cols=16  Identities=13%  Similarity=-0.386  Sum_probs=12.5

Q ss_pred             CCCCEEEEEECCCCCC
Q ss_conf             6998899961477768
Q gi|254780995|r   19 TGIPFVIAGDFNRKIN   34 (125)
Q Consensus        19 ~~~pvIi~GDFN~~~~   34 (125)
                      .+..|.|+|+||.+-.
T Consensus       180 ~~~~V~v~G~fn~W~~  195 (294)
T 3nme_A          180 GFSRVEISGLDIGWGQ  195 (294)
T ss_dssp             SCSCEEEEETTTEEEE
T ss_pred             CCCEEEEEEEECCCCC
T ss_conf             9989999847489899


Done!