Query gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 125 No_of_seqs 109 out of 919 Neff 9.4 Searched_HMMs 23785 Date Wed Jun 1 00:22:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780995.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2j63_A AP-endonuclease; base e 99.6 3.1E-15 1.3E-19 100.5 8.7 98 18-121 345-467 (467) 2 3l1w_A Uncharacterized protein 99.5 1.2E-14 5.2E-19 97.3 7.4 112 3-122 142-253 (257) 3 3g6s_A Putative endonuclease/e 99.5 1.3E-13 5.3E-18 91.9 8.5 113 4-122 149-262 (267) 4 3mpr_A Putative endonuclease/e 99.4 2.9E-13 1.2E-17 90.0 7.9 111 4-123 153-292 (298) 5 2ddr_A Sphingomyelin phosphodi 99.4 2.1E-13 8.9E-18 90.7 6.8 118 3-121 169-306 (306) 6 3i41_A Beta-hemolysin; beta to 99.4 6.2E-13 2.6E-17 88.2 8.9 117 3-119 188-317 (317) 7 1ako_A Exonuclease III; AP-end 99.4 3.7E-13 1.6E-17 89.4 6.7 111 7-119 130-267 (268) 8 1zwx_A SMCL, sphingomyelinase- 99.4 9E-13 3.8E-17 87.3 7.8 112 4-116 170-296 (301) 9 3ngq_A CCR4-NOT transcription 99.4 8.9E-13 3.8E-17 87.3 7.6 119 3-124 215-385 (398) 10 2jc4_A Exodeoxyribonuclease II 99.4 9.8E-13 4.1E-17 87.1 7.6 112 7-120 125-256 (256) 11 2a40_B Deoxyribonuclease-1; WA 99.4 6.1E-13 2.6E-17 88.2 5.9 113 5-119 143-260 (260) 12 1hd7_A DNA-(apurinic or apyrim 99.3 2.8E-12 1.2E-16 84.7 7.6 98 17-120 199-318 (318) 13 1sr4_B CDT B, cytolethal diste 99.3 1.9E-12 7.8E-17 85.6 4.0 107 4-118 153-259 (261) 14 2voa_A AF_EXO, XTHA, exodeoxyr 99.2 5.2E-11 2.2E-15 77.9 8.8 105 15-120 133-257 (257) 15 2f1n_A CDT B, cytolethal diste 99.1 1.1E-11 4.4E-16 81.6 2.9 88 17-118 174-261 (262) 16 3g91_A MTH0212, exodeoxyribonu 99.1 3.5E-10 1.5E-14 73.4 10.5 113 5-123 128-260 (265) 17 2o3h_A DNA-(apurinic or apyrim 99.1 1.8E-10 7.4E-15 75.0 9.0 100 15-120 164-285 (285) 18 1wdu_A TRAS1 ORF2P; four-layer 99.1 2.3E-10 9.5E-15 74.5 6.3 93 17-122 143-245 (245) 19 1vyb_A ORF2 contains A reverse 99.0 1.9E-09 7.9E-14 69.5 8.8 99 9-119 125-238 (238) 20 2imq_X Salivary nitrophorin; f 99.0 5.5E-10 2.3E-14 72.4 5.9 100 16-121 159-281 (282) 21 3mtc_A Type II inositol-1,4,5- 99.0 9.4E-10 3.9E-14 71.2 6.8 22 18-39 180-201 (313) 22 3nr8_B Phosphatidylinositol-3, 98.9 6.1E-09 2.6E-13 66.8 8.4 103 18-124 181-315 (316) 23 1i9z_A Synaptojanin, phosphati 98.8 6.8E-09 2.9E-13 66.6 5.7 98 17-121 196-316 (347) 24 2ei9_A Non-LTR retrotransposon 98.6 7.6E-08 3.2E-12 61.0 7.1 101 6-122 107-221 (240) 25 2xsw_A 72 kDa inositol polypho 98.5 1.2E-07 4.9E-12 60.0 6.2 18 104-121 304-321 (357) 26 2jc5_A Exodeoxyribonuclease; h 98.5 2.9E-07 1.2E-11 57.9 7.4 38 81-122 219-258 (259) 27 1xfk_A Formimidoylglutamase; f 34.9 23 0.00098 15.6 2.8 31 2-32 100-130 (336) 28 3nme_A Ptpkis1 protein, SEX4 g 20.8 31 0.0013 14.9 1.4 16 19-34 180-195 (294) No 1 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Probab=99.59 E-value=3.1e-15 Score=100.46 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=57.2 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCH-------------------HHHHCCCCC---CCHHH-CCCCCCCCCCCCCCCCCCC Q ss_conf 169988999614777688310027-------------------876326554---10000-2576768710388755433 Q gi|254780995|r 18 KTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG---LLIRF-PQEKESTCNVIKRNKSSLD 74 (125) Q Consensus 18 ~~~~pvIi~GDFN~~~~~~~~~~~-------------------~~~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~d 74 (125) ..+.|+|||||||+.+.+.+.+.. +.+.+...+ .++.. +.....+|||..+...+.. T Consensus 345 ~~~~~vIl~GDfNv~~~~~D~~~~~~~~~~~~~~g~~~eER~~~~~~l~~~glvDafR~~hP~~~~~YT~W~~r~~~r~~ 424 (467) T 2j63_A 345 SSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPR 424 (467) T ss_dssp CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTTTT T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 25774687244355752110222232430367877898999999999986798994430359989983882877784325 Q ss_pred CCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 35521012100257321--154302474112586788756499999616 Q gi|254780995|r 75 YFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121 (125) Q Consensus 75 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~ 121 (125) ..+.|||+++++..+ ++..+.+. ...++||||||+++|.|. T Consensus 425 --n~G~RIDyilvS~~L~~~V~~~~I~----~~~~gSDH~PV~l~Lr~p 467 (467) T 2j63_A 425 --NLGWRLDYFVVSSRLASYVVDCFPM----PTVMGSDHCPFQMWMRHP 467 (467) T ss_dssp --TCCBCCEEEEEEGGGGGGEEEEEEC----TTCCSSSBCCEEEEEECC T ss_pred --CCCEEEEEEEECHHHHHHCEEEEEC----CCCCCCCCCCEEEEEECC T ss_conf --9866025999776997023089986----899968804649998689 No 2 >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Probab=99.54 E-value=1.2e-14 Score=97.25 Aligned_cols=112 Identities=11% Similarity=-0.017 Sum_probs=58.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 89999999999985116998899961477768831002787632655410000257676871038875543335521012 Q gi|254780995|r 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82 (125) Q Consensus 3 ~~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 82 (125) .+|++.+..++.. ...+.|+|++||||..+....... ..+.+.+ ... .........+++....... .....+| T Consensus 142 ~~~~~~~~~~~~~-~~~~~~~iv~GDfN~~~~~~~~~~-~~~~~~d-~~~-~~~~~~~~~~~~~~~~~~~---~~~~~rI 214 (257) T 3l1w_A 142 LAGMTVILEELHD-KIAQYPTLLMGDFNAESGEEVHQL-VQKKFQD-SKN-LATHYGPRGTFQNFTYTKP---WAELEEI 214 (257) T ss_dssp HHHHHHHHHHTHH-HHHHSCEEEEEECCCCTTSHHHHH-HTTTCEE-GGG-TSEEESCSCCBCTTCTTCC---GGGCBCC T ss_pred HHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCHHHHHH-HHHHCCH-HHH-HCCCCCCCCCCCCCCCCCC---CCCCCEE T ss_conf 9999998889985-477897688345688743058999-8732504-455-2055688664256556677---7889407 Q ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 1002573211543024741125867887564999996164 Q gi|254780995|r 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125) |++++++ ..+....+......+..+|||+||+++|+|+- T Consensus 215 D~i~~s~-~~~~~~~~~~~~~~~~~~SDH~PV~a~~~~k~ 253 (257) T 3l1w_A 215 DYIYVKG-WQVQQTASLTDSIDGRFPSDHFPLEAEVAGEN 253 (257) T ss_dssp EEEEEES-EEEEEEEECCCCBTTBCSSSBCCEEEEEEEC- T ss_pred EEEEEEC-CEEEEEEEECCCCCCCCCCCCCCEEEEEEEEC T ss_conf 8999838-83579999488768998785416899999302 No 3 >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Probab=99.47 E-value=1.3e-13 Score=91.89 Aligned_cols=113 Identities=13% Similarity=-0.017 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHC-CCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 99999999999851169988999614777688310027876326554100002-57676871038875543335521012 Q gi|254780995|r 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP-QEKESTCNVIKRNKSSLDYFVIDRDN 82 (125) Q Consensus 4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~ 82 (125) +|...+.++.. ....+.|+|++||||..+.+..................... ......+++..... ....+.+| T Consensus 149 ~~~~~~~~~~~-~~~~~~~~i~~GDfN~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ri 223 (267) T 3g6s_A 149 QSALLIIRKIK-EIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARI----PAEDCEKI 223 (267) T ss_dssp HHHHHHHHHHH-HHTTTSCEEEEEECSSCTTSHHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTS----CGGGCCCC T ss_pred HHHHHHHHHHH-HHCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCE T ss_conf 99999998765-30268972132667889766899999853654201233213455567643787766----77888417 Q ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 1002573211543024741125867887564999996164 Q gi|254780995|r 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125) |++++++++++..+.+.... .+..+|||+||+++|++|. T Consensus 224 D~I~~s~~l~~~~~~v~~~~-~~~~~SDH~PV~~~~~lk~ 262 (267) T 3g6s_A 224 DFIFVTPQVLVKSCEIPAEV-PEALLSDHNPQLADLELEH 262 (267) T ss_dssp EEEEECTTSEEEEEEECCCC-SSSCCCSBCCEEEEEEEC- T ss_pred EEEEECCCEEEEEEEECCCC-CCCCCCCCCCEEEEEEEEE T ss_conf 79998899479999975788-9998785420489999995 No 4 >3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Probab=99.43 E-value=2.9e-13 Score=89.96 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=53.8 Q ss_pred HHHHHHHHHHHH-HHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCC----CCCCCCCCCCC Q ss_conf 999999999998-5116998899961477768831002787632655410000257676871038----87554333552 Q gi|254780995|r 4 QQGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK----RNKSSLDYFVI 78 (125) Q Consensus 4 ~Q~~~L~~~i~~-~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~ 78 (125) ++++.....+.. ....+.|+|+|||||..+.+.............+............++++.. ....++|||++ T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~~~~~~~~~~~riDyI~~ 232 (298) T 3mpr_A 153 ESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPNSFTESRIDHIFV 232 (298) T ss_dssp HHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTSSSEEHHHHCSEEECSSCSBCTTCTTCCCSCCCEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 99888888886530257887897073498988366765543020355787616567898875544678888861568996 Q ss_pred CCHHHHCCCCCCCEEEEECCC------------------------CCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 101210025732115430247------------------------411258678875649999961646 Q gi|254780995|r 79 DRDNKNFLIDNSFSIVSYDQS------------------------DLDTRRSKLSTHCPLTIEYDFEKG 123 (125) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~SDH~PV~~~l~f~~~ 123 (125) ++ ++.+..+.+. ........+|||+||+++|+|+.- T Consensus 233 s~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~~~~~~ 292 (298) T 3mpr_A 233 SP---------SFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDLE 292 (298) T ss_dssp CT---------TSEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEECSS T ss_pred CC---------CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC T ss_conf 79---------7404678996044323222223444444322234456788997842208999999376 No 5 >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Probab=99.43 E-value=2.1e-13 Score=90.68 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=55.5 Q ss_pred HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHH-----HHHCCCCCCCHH---HCCCCCCCC----CCCCCC Q ss_conf 899999999999851-1699889996147776883100278-----763265541000---025767687----103887 Q gi|254780995|r 3 SQQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDF-----WQKMDPDGLLIR---FPQEKESTC----NVIKRN 69 (125) Q Consensus 3 ~~Q~~~L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~~~-----~~~l~~~~~~~~---~~~~~~~~~----~~~~~~ 69 (125) .+|+..+..++.++. ..+.|+|+|||||..+.+....... ...+........ ......... ...... T Consensus 169 ~~q~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 248 (306) T 2ddr_A 169 TNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSP 248 (306) T ss_dssp HHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHHHHTBCCCEEEECSCSBCTTTCHHHHHHCTTSC T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999877666542134688579971467886642230137888898763444322257886526655655565657898 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEE-------CCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 554333552101210025732115430-------2474112586788756499999616 Q gi|254780995|r 70 KSSLDYFVIDRDNKNFLIDNSFSIVSY-------DQSDLDTRRSKLSTHCPLTIEYDFE 121 (125) Q Consensus 70 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~SDH~PV~~~l~f~ 121 (125) ...+|||++++......... ..+... ...........+|||+||+++|+++ T Consensus 249 ~~riDyI~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~~~lk 306 (306) T 2ddr_A 249 AEYLDYIIASKDHANPSYIE-NKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISMK 306 (306) T ss_dssp CBCCEEEEEBTTSCCCSEEE-EEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC- T ss_pred CCEEEEEEEECCCCCCCEEE-EEEEECCCCCCEECCCCCCCCCCCCCCCHHEEEEEEEC T ss_conf 85688999786203752220-05761144431001223577889988614269999979 No 6 >3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A Probab=99.42 E-value=6.2e-13 Score=88.17 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=58.3 Q ss_pred HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHC--CCCCCCCCC----CCCCCCCCCC Q ss_conf 899999999999851-169988999614777688310027876326554100002--576768710----3887554333 Q gi|254780995|r 3 SQQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--QEKESTCNV----IKRNKSSLDY 75 (125) Q Consensus 3 ~~Q~~~L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~----~~~~~~~~d~ 75 (125) .+|++.+..++..+. ..+.|+|+|||||..+.+..........-..+....... ......+++ ......++|| T Consensus 188 ~~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~riDy 267 (317) T 3i41_A 188 AEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDY 267 (317) T ss_dssp HHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHHHHTBCCCEEEECSCSBCTTTCHHHHHHCTTCCCBCCEE T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 99999999866554014667579844478898877999999866986530014776545765765565657898714889 Q ss_pred CCCCCHHHHCCCCCCCEEE------EECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 5521012100257321154------3024741125867887564999996 Q gi|254780995|r 76 FVIDRDNKNFLIDNSFSIV------SYDQSDLDTRRSKLSTHCPLTIEYD 119 (125) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125) |++++.............. .............+|||+||++-+. T Consensus 268 I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~~ 317 (317) T 3i41_A 268 IFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYSK 317 (317) T ss_dssp EEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEEC T ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 99757402643110048862366310124445677899676106489939 No 7 >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1 Probab=99.40 E-value=3.7e-13 Score=89.36 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------------HHHCCCCCC----CHHHCCCCCC Q ss_conf 999999998511699889996147776883100278---------------------763265541----0000257676 Q gi|254780995|r 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPDGL----LIRFPQEKES 61 (125) Q Consensus 7 ~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------------~~~l~~~~~----~~~~~~~~~~ 61 (125) +.+...+.+..+.+.|+|++||||..+...+..... ...+...+. ....+..... T Consensus 130 ~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~~~~~~~ 209 (268) T 1ako_A 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADR 209 (268) T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSC T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCC T ss_conf 99999999987379976863452348417653373540112102576566878999999997489787714326887875 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 8710388755433355210121002573211--543024741125867887564999996 Q gi|254780995|r 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYD 119 (125) Q Consensus 62 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125) +++|..+...+.. ..+.|||++++++++. +....+.........+||||||+++|. T Consensus 210 ~~~~~~~~~~~~~--~~g~RIDyil~S~~l~~~~~~~~i~~~~~~~~~~SDH~PV~~~~r 267 (268) T 1ako_A 210 FSWFDYRSKGFDD--NRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268) T ss_dssp CSBCCTTTTHHHH--TCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC T ss_pred CEECCCCCCCCCC--CCCEEEEEEEECHHHHHHHEEEEEEHHHCCCCCCCCCCCEEEEEE T ss_conf 2004676776447--986785799978799734128887566418999998544799997 No 8 >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Probab=99.38 E-value=9e-13 Score=87.31 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=56.7 Q ss_pred HHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCC----CCC----CCCCCCCCCCC Q ss_conf 99999999999851-1699889996147776883100278763265541000025767----687----10388755433 Q gi|254780995|r 4 QQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STC----NVIKRNKSSLD 74 (125) Q Consensus 4 ~Q~~~L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~----~~~~~~~~~~d 74 (125) .|++.+.+|+.+.. +.+.|+|||||||..+.+....... +.+.............. ..+ .....++.++| T Consensus 170 ~q~~~~~~~l~~~~~~~~~~vii~GDfN~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD 248 (301) T 1zwx_A 170 EQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDML-KLLNVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYLD 248 (301) T ss_dssp HHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHH-HHHTBCCCTTCCTTSCSBCTTTCHHHHHHCTTSCCBCCE T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 9999977543320146751599984669898867999999-755876410025777753442245556565689984488 Q ss_pred CCCCCCHHHHCCCCCCCEEEE------ECCCCCCCCCCCCCCCCCEEE Q ss_conf 355210121002573211543------024741125867887564999 Q gi|254780995|r 75 YFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTHCPLTI 116 (125) Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~ 116 (125) |+++++............... ............+|||+||++ T Consensus 249 yI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PVvA 296 (301) T 1zwx_A 249 YIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVG 296 (301) T ss_dssp EEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEE T ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 999847414543212048862266421134445688899487205589 No 9 >3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Probab=99.38 E-value=8.9e-13 Score=87.33 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=58.4 Q ss_pred HHHHHHHHHHHHHHH-------------CCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCH---------------- Q ss_conf 899999999999851-------------169988999614777688310027876326554100---------------- Q gi|254780995|r 3 SQQGEWLKKWADQKI-------------KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---------------- 53 (125) Q Consensus 3 ~~Q~~~L~~~i~~~~-------------~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~---------------- 53 (125) .+|++.|.++++... ..+.|+|++||||..+.+..+.......+.. .... T Consensus 215 ~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 293 (398) T 3ngq_A 215 LIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVAD-NHKDFKELRYNECLMNFSCN 293 (398) T ss_dssp HHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSHHHHHHHHTEEET-TCGGGCC-----GGGGGCC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCC-CCHHHHHHCCCCCCCCCCCC T ss_conf 99999999999999987665320123445687448714546787647899987089774-31034440344444445655 Q ss_pred ------------------HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCC-----CCCCCCCCCCC Q ss_conf ------------------0025767687103887554333552101210025732115430247-----41125867887 Q gi|254780995|r 54 ------------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLST 110 (125) Q Consensus 54 ------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~SD 110 (125) ........++.+.......+|||+++...... ............ .......++|| T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~riDyI~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~SD 371 (398) T 3ngq_A 294 GKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKTHMNV--EGVLGPLDPQWLVENNITGCPHPHIPSD 371 (398) T ss_dssp ------CCEEECSCCEEETTTTTSSSCSEECSSCEECCEEEEEETTTEEE--EEEECCCCHHHHHHTTCCSSCBTTBCSS T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCE--EEEECCCCHHHHCCCCCCCCCCCCCCCC T ss_conf 43344664445676554334578787520249989538899973764634--4420567778712000257778899885 Q ss_pred CCCEEEEEECCCCC Q ss_conf 56499999616468 Q gi|254780995|r 111 HCPLTIEYDFEKGN 124 (125) Q Consensus 111 H~PV~~~l~f~~~~ 124 (125) |+||+++|+|+-.+ T Consensus 372 H~pV~a~~~l~~~~ 385 (398) T 3ngq_A 372 HFSLLTQLELHPPL 385 (398) T ss_dssp BCCEEEEEEECCC- T ss_pred CHHEEEEEEECCCC T ss_conf 14079999971899 No 10 >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Probab=99.38 E-value=9.8e-13 Score=87.11 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=61.3 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCH---------------HHHHCCCCCC---CHHHCCCCCCCCCCCCC Q ss_conf 99999999851169988999614777688310027---------------8763265541---00002576768710388 Q gi|254780995|r 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL---LIRFPQEKESTCNVIKR 68 (125) Q Consensus 7 ~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~---------------~~~~l~~~~~---~~~~~~~~~~~~~~~~~ 68 (125) ..+.++..+....+.|++++||||..+.+.....+ ....+...+. .....++....+++... T Consensus 125 ~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 204 (256) T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYR 204 (256) T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTT T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC T ss_conf 99998888762248874303432358648776073430145458989999887543157389887613898763257876 Q ss_pred CCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 75543335521012100257321--15430247411258678875649999961 Q gi|254780995|r 69 NKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125) Q Consensus 69 ~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125) ..... ...+.|||++++++++ ++....+.........+|||+||+++|+| T Consensus 205 ~~~~~--~~~g~RIDyI~~S~~l~~~v~~~~v~~~~~~~~~~SDH~PV~~~l~~ 256 (256) T 2jc4_A 205 GAMFQ--RKLGLRIDHILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW 256 (256) T ss_dssp TTHHH--HTCCBCCEEEEECHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEECC T ss_pred CCCCC--CCCCEEEEEEEECHHHHHHCEEEEEEECCCCCCCCCCCCCEEEEEEC T ss_conf 77241--68854668999685997332699997312479999982268999969 No 11 >2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Probab=99.36 E-value=6.1e-13 Score=88.22 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=59.4 Q ss_pred HHHHHHHHHHH--HHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 99999999998--5116998899961477768831002787632655410000257676871038875543335521012 Q gi|254780995|r 5 QGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82 (125) Q Consensus 5 Q~~~L~~~i~~--~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 82 (125) +++++.++++. +...+.|+|+|||||..+.+...................... ...++........+||+++++.+ T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~iD~i~~s~~~ 220 (260) T 2a40_B 143 EINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIP--DSADTTATSTNCAYDRIVVAGSL 220 (260) T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGGGCHHHHSTTEEESSC--TTCCCBSSSCCCCCEEEEEESHH T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEECHHH T ss_conf 9999999999998636588889946666677752578898613522222112478--88853347989860499976168 Q ss_pred H-HCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEEE Q ss_conf 1-0025732115430247--41125867887564999996 Q gi|254780995|r 83 K-NFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEYD 119 (125) Q Consensus 83 ~-~~~~~~~~~~~~~~~~--~~~~~~~~~SDH~PV~~~l~ 119 (125) . ......+..+..+... .......++|||+||+++|. T Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~ls 260 (260) T 2a40_B 221 LQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260) T ss_dssp HHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC T ss_pred HCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 3662714702675131102566345897187558899979 No 12 >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A Probab=99.33 E-value=2.8e-12 Score=84.67 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=55.3 Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCHH----------------HHHCCCCCC---C-HHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 11699889996147776883100278----------------763265541---0-000257676871038875543335 Q gi|254780995|r 17 IKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGL---L-IRFPQEKESTCNVIKRNKSSLDYF 76 (125) Q Consensus 17 ~~~~~pvIi~GDFN~~~~~~~~~~~~----------------~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~d~~ 76 (125) .....|+|++||||..+.+....+.. ...+...+. + ...+.....+|||+++...+. . T Consensus 199 ~~~~~~~i~~Gd~N~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~gl~D~~r~~~p~~~~~yT~ws~~~~~~~--~ 276 (318) T 1hd7_A 199 LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS--K 276 (318) T ss_dssp HHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHH--H T ss_pred HCCCCEEEEECCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCCCCC--C T ss_conf 04643388604444587366414855512322341466778999985257642002015899995500066567653--7 Q ss_pred CCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 5210121002573211--5430247411258678875649999961 Q gi|254780995|r 77 VIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125) Q Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125) ..+.|||+++++..+. +..+.+. .+.++||||||+++|++ T Consensus 277 n~g~RIDyilvS~~l~~~v~~~~i~----~~~~~SDH~PV~l~L~l 318 (318) T 1hd7_A 277 NVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL 318 (318) T ss_dssp TCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC T ss_pred CCCEEEEEEEECHHHHHHCCEEEEC----CCCCCCCCCCEEEEEEC T ss_conf 9865658999685898233178985----89999984168999969 No 13 >1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Probab=99.27 E-value=1.9e-12 Score=85.64 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=56.1 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 99999999999851169988999614777688310027876326554100002576768710388755433355210121 Q gi|254780995|r 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83 (125) Q Consensus 4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 83 (125) ++...+..+.......+.|+|+|||||..+.+... ..+...+......... .+++++.....+||++++.... T Consensus 153 ~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~t~~~~~~iD~i~~~~~~~ 225 (261) T 1sr4_B 153 NIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLEV-----ALRQEPAVSENTIIIA--PTEPTHRSGNILDYAILHDAHL 225 (261) T ss_dssp HHHHHHHC---CGGGGGCEEEEEEECSSCHHHHHH-----HHTTSHHHHHTCEEEC--CSSCSBTTSCCCEEEEEECTTS T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH-----HHHHHCCCCCCEEECC--CCCCCCCCCCCEEEEEECCCCC T ss_conf 99999999998752568876984345887521578-----9876135544132047--7778569898574899767010 Q ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE Q ss_conf 00257321154302474112586788756499999 Q gi|254780995|r 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118 (125) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l 118 (125) .......... .............+||||||...+ T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~~~~SDH~PV~~~~ 259 (261) T 1sr4_B 226 PRREQARERI-GASLMLNQLRSQITSDHFPVSFVR 259 (261) T ss_dssp CTTCGGGCCE-EEEECGGGCSSCCSSSBCCEEEEE T ss_pred CEEECCCCCE-EEEEECCCCCCCCCCCCHHHEEEE T ss_conf 3032144202-334412334799628765038884 No 14 >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Probab=99.21 E-value=5.2e-11 Score=77.87 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=58.8 Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCHH---------------HHHCCCCCC---CHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 8511699889996147776883100278---------------763265541---0000257676871038875543335 Q gi|254780995|r 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL---LIRFPQEKESTCNVIKRNKSSLDYF 76 (125) Q Consensus 15 ~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~ 76 (125) .....+.+++++||||.........+.. .+.+.+.+. +....++....++|........ .. T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~D~~r~~~~~~~~~~~~~~~~~~~~-~~ 211 (257) T 2voa_A 133 KTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAI-ER 211 (257) T ss_dssp HHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTTT-TT T ss_pred HHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCC-CC T ss_conf 86642023233331013840643358043346665788999999999876881201543799986310676578743-47 Q ss_pred CCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 521012100257321--15430247411258678875649999961 Q gi|254780995|r 77 VIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125) Q Consensus 77 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125) ..+.|||++++++++ ++..+.+......+..+|||+||+++|++ T Consensus 212 ~~g~RIDyIl~s~~l~~~~~~~~v~~~~~~~~~~SDH~PV~~~l~i 257 (257) T 2voa_A 212 GLGWRGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFDV 257 (257) T ss_dssp TCCBCCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEECC T ss_pred CCCEEEEEEEECHHHHHHHCEEEEEEEECCCCCCCCCEEEEEEEEC T ss_conf 9967779999786998652089986510479999982379999989 No 15 >2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Probab=99.15 E-value=1.1e-11 Score=81.59 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=43.8 Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEE Q ss_conf 11699889996147776883100278763265541000025767687103887554333552101210025732115430 Q gi|254780995|r 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96 (125) Q Consensus 17 ~~~~~pvIi~GDFN~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 96 (125) ...+.|+|++||||..+.+....- ...+... .....+ +..++.....+||+++++.+......-.. T Consensus 174 ~~~~~~~iv~GDfN~~~~~~~~~~--~~~~~~~--~~~~~~-----~~~t~~~~~riD~i~~s~~~~~~~~~~~~----- 239 (262) T 2f1n_A 174 VHQALNWMILGDFNREPADLEMNL--TVPVRRA--SEIISP-----AAATQTSQRTLDYAVAGNSVAFRPSPLQA----- 239 (262) T ss_dssp HHHTCEEEEEEECSSCHHHHHTTS--CHHHHHT--EEEECC-----SSCSBTTSCCCEEEEEEESSCCCCCCCEE----- T ss_pred HCCCCCEEECCCCCCCCHHHHHHH--HHHHHHH--HHHCCC-----CCCCCCCCCEEEEEEECCCHHCCCCEEEE----- T ss_conf 367997573476465715677766--5343332--031289-----98757999829999980816535213689----- Q ss_pred CCCCCCCCCCCCCCCCCEEEEE Q ss_conf 2474112586788756499999 Q gi|254780995|r 97 DQSDLDTRRSKLSTHCPLTIEY 118 (125) Q Consensus 97 ~~~~~~~~~~~~SDH~PV~~~l 118 (125) .+.........+||||||.++| T Consensus 240 ~~~~~~~~~~~~SDH~PV~~~~ 261 (262) T 2f1n_A 240 GIVYGARRTQISSDHFPVGVSR 261 (262) T ss_dssp EETTTTSCCCCSCSBCCEEEEC T ss_pred EEEECCCCCCCCCCCHHEEEEE T ss_conf 9850335899648854238984 No 16 >3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Probab=99.15 E-value=3.5e-10 Score=73.44 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------HHHCCCCCC---CHHHCCCCCCCCCCC Q ss_conf 99999999998511699889996147776883100278---------------763265541---000025767687103 Q gi|254780995|r 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL---LIRFPQEKESTCNVI 66 (125) Q Consensus 5 Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------~~~l~~~~~---~~~~~~~~~~~~~~~ 66 (125) ....+..........+.+.+++||||.........++. ...+.+.+. +.........+++|. T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 207 (265) T 3g91_A 128 FYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWS 207 (265) T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSCCCSBCC T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEECC T ss_conf 99999999999854678467206510287044046866627896899899987653343698101242278999614337 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 8875543335521012100257321--15430247411258678875649999961646 Q gi|254780995|r 67 KRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123 (125) Q Consensus 67 ~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~~ 123 (125) .+...... ..+.|||++++++++ ++..+.+.. +.++||||||+++|++.|- T Consensus 208 ~~~~~~~~--~~~~RIDyIl~s~~l~~~v~~~~v~~----~~~~SDH~PV~~el~l~~~ 260 (265) T 3g91_A 208 YRTRARER--NVGWRLDYFFVNEEFKGKVKRSWILS----DVMGSDHCPIGLEIELLEH 260 (265) T ss_dssp SSTTTTTT--TCCBCCEEEEEEGGGGGGEEEEEECT----TCCSSSBCCEEEEEECCCC T ss_pred CCCCCCCC--CCCEEEEEEEECHHHHHHCCEEEECC----CCCCCCCCCEEEEEEECCC T ss_conf 87887558--99757589997759970244999847----9999992578999991464 No 17 >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Probab=99.15 E-value=1.8e-10 Score=75.05 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=51.6 Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCH----------------HHHHCCCCCC----CHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 851169988999614777688310027----------------8763265541----00002576768710388755433 Q gi|254780995|r 15 QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL----LIRFPQEKESTCNVIKRNKSSLD 74 (125) Q Consensus 15 ~~~~~~~pvIi~GDFN~~~~~~~~~~~----------------~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~d 74 (125) .....+.++|++||||..+......+. +.+.+...+. ....+.....++||+++...+. T Consensus 164 ~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~r~~~p~~~~~yT~~s~~~~~~~- 242 (285) T 2o3h_A 164 KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS- 242 (285) T ss_dssp HHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTHHH- T ss_pred HHHCCCCEEEEECCHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCCCC- T ss_conf 4304654389705111286243204767642002468388888999974147544202424899982675458788452- Q ss_pred CCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 355210121002573211--5430247411258678875649999961 Q gi|254780995|r 75 YFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125) Q Consensus 75 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125) ...+.|||++++++++. +..+.+. ...++|||+||+++|++ T Consensus 243 -~~~g~RID~Il~S~~l~~~v~~~~v~----~~~~~SDH~PV~v~L~l 285 (285) T 2o3h_A 243 -KNVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL 285 (285) T ss_dssp -HTCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC T ss_pred -CCCCEEEEEEEECHHHHHHCEEEEEC----CCCCCCCCCCEEEEEEC T ss_conf -79966768999783897131078987----89999983268999979 No 18 >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Probab=99.06 E-value=2.3e-10 Score=74.48 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=42.5 Q ss_pred HCCCCCEEEEEECCCCCCCCCCCC--HHHHHCC----CCCCCHHHCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHCC Q ss_conf 116998899961477768831002--7876326----55410000257676871038----8755433355210121002 Q gi|254780995|r 17 IKTGIPFVIAGDFNRKINSIGDTD--DFWQKMD----PDGLLIRFPQEKESTCNVIK----RNKSSLDYFVIDRDNKNFL 86 (125) Q Consensus 17 ~~~~~pvIi~GDFN~~~~~~~~~~--~~~~~l~----~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~ 86 (125) ...+.|+||+||||..+.+-.... .....+. ...... .......+++.. .....+||++++..+.. T Consensus 143 ~~~~~~~Il~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~t~~~~~~~~~~~~rID~i~~s~~l~~-- 218 (245) T 1wdu_A 143 KMGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHI--LNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLD-- 218 (245) T ss_dssp TTCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEE--CCCSCCCSEEC-----CCEECCEEEEECGGGBT-- T ss_pred HCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCEEEECCCCCCCCCCCEEEEEECCHHHH-- T ss_conf 5479649997343536544466531000123333444322222--465321012024688888962489998936862-- Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 573211543024741125867887564999996164 Q gi|254780995|r 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125) .+....+. .+...|||+||+++|+++| T Consensus 219 -----~~~~~~v~----~~~~~SDH~pv~~~l~l~k 245 (245) T 1wdu_A 219 -----LIDGWRVD----EDLVSSDHNGMVFNIRLQK 245 (245) T ss_dssp -----TEEEEEEC----TTSSSSSBCCEEEEECCCC T ss_pred -----HCEEEEEC----CCCCCCCCCEEEEEEEEEC T ss_conf -----14699998----9999999810899999709 No 19 >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Probab=98.99 E-value=1.9e-09 Score=69.55 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=49.0 Q ss_pred HHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCC---------HHHHHCCCCCC---CHHHCCCCCCCCCCCCCCC--CCC Q ss_conf 999999851-16998899961477768831002---------78763265541---0000257676871038875--543 Q gi|254780995|r 9 LKKWADQKI-KTGIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGL---LIRFPQEKESTCNVIKRNK--SSL 73 (125) Q Consensus 9 L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~---------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~ 73 (125) +.+++.... ..+.|+|++||||..+...+... .....+...+. ...........+++..... .++ T Consensus 125 ~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~r~~~~~~~~~t~~~~~~~~~~rI 204 (238) T 1vyb_A 125 IKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKI 204 (238) T ss_dssp HHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTEEECC T ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEE T ss_conf 88889999863036501101004687455423500021356888998863035531212013687555104788978626 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 3355210121002573211543024741125867887564999996 Q gi|254780995|r 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119 (125) Q Consensus 74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125) ||++++..+.. ++..+.+. ...+|||+||+++|. T Consensus 205 D~i~~s~~~~~-------~~~~~~v~-----~~~~SDH~pv~~~Lk 238 (238) T 1vyb_A 205 DHIVGSKALLS-------KCKRTEII-----TNYLSDHSAIKLELR 238 (238) T ss_dssp EEEEEEGGGGG-------GEEEEEEE-----CCSSSSSCEEEEEEC T ss_pred EEEEECCHHHH-------HCCEEEEC-----CCCCCCCCCEEEEEC T ss_conf 79997847970-------26299968-----997998201899969 No 20 >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Probab=98.98 E-value=5.5e-10 Score=72.41 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=49.3 Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCHH-------HHH--------CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 511699889996147776883100278-------763--------26554100002576768710388755433355210 Q gi|254780995|r 16 KIKTGIPFVIAGDFNRKINSIGDTDDF-------WQK--------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80 (125) Q Consensus 16 ~~~~~~pvIi~GDFN~~~~~~~~~~~~-------~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 80 (125) ....+.++|++||||..+......... ... ......+....+....+++|+++....-.+. +. T Consensus 159 ~~~~~d~~i~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~f~~~~e~~~~F~~~~~~~~~~~~~~--~~ 236 (282) T 2imq_X 159 KDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYD--LS 236 (282) T ss_dssp SSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBCBCTTSSCBC--TT T ss_pred CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCC--CC T ss_conf 5777874674366554434221456666420489999874667654222320235368873499512577765467--75 Q ss_pred HH----HHCCCCCCC----EEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 12----100257321----154302474112586788756499999616 Q gi|254780995|r 81 DN----KNFLIDNSF----SIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121 (125) Q Consensus 81 ~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~ 121 (125) |+ |+++.++.. +...| ......++|||+||+++|+++ T Consensus 237 Ripsw~DrIL~s~~~~~~v~~~~y----~~~~~~~~SDH~PV~a~F~v~ 281 (282) T 2imq_X 237 ATPSWTDRALYKSGTGKTIQPLSY----NSLTNYKQTEHRPVLAKFRVT 281 (282) T ss_dssp SCCBCCEEEEEECSSSCCEEEEEE----EECTTCCSSSSCCEEEEEEEE T ss_pred CCCCCCCEEEEECCCCCCCEEEEE----EECCCCCCCCCCCEEEEEEEE T ss_conf 267667779978875785389587----778888888890479999997 No 21 >3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} Probab=98.97 E-value=9.4e-10 Score=71.17 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.2 Q ss_pred CCCCCEEEEEECCCCCCCCCCC Q ss_conf 1699889996147776883100 Q gi|254780995|r 18 KTGIPFVIAGDFNRKINSIGDT 39 (125) Q Consensus 18 ~~~~pvIi~GDFN~~~~~~~~~ 39 (125) ..+.++|+|||||..+...... T Consensus 180 ~~~~~vi~~GD~N~~~~~~~~~ 201 (313) T 3mtc_A 180 SNHDVILWLGDLNYRIEELDVE 201 (313) T ss_dssp TSSSEEEEEEECCCCBCSSCHH T ss_pred CCCCEEEEECCCCCCCCCCCHH T ss_conf 2698699952344245654567 No 22 >3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens} Probab=98.89 E-value=6.1e-09 Score=66.83 Aligned_cols=103 Identities=8% Similarity=-0.047 Sum_probs=48.6 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCHHH------H-------------------HCCCCC-----CCHHHCCCCCCCCCCCC Q ss_conf 16998899961477768831002787------6-------------------326554-----10000257676871038 Q gi|254780995|r 18 KTGIPFVIAGDFNRKINSIGDTDDFW------Q-------------------KMDPDG-----LLIRFPQEKESTCNVIK 67 (125) Q Consensus 18 ~~~~pvIi~GDFN~~~~~~~~~~~~~------~-------------------~l~~~~-----~~~~~~~~~~~~~~~~~ 67 (125) ..+.++|+|||||..+........-. . .+.+.. ..+........+++|.. T Consensus 181 ~~~~~vi~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~E~~i~F~pTyk~~~~~~~~yt~~~~ 260 (316) T 3nr8_B 181 LRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQ 260 (316) T ss_dssp SSSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTSBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCCBC T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 24582799665202246531466776234655665426999999861876689722784347873662799987610045 Q ss_pred CCCCCCCCC-CCCCHHHHCCCCC-CCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC Q ss_conf 875543335-5210121002573-21154302474112586788756499999616468 Q gi|254780995|r 68 RNKSSLDYF-VIDRDNKNFLIDN-SFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124 (125) Q Consensus 68 ~~~~~~d~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~~~ 124 (125) +.......+ -+..||++..... .+.+..|.+. .....||||||+++|+.+-.+ T Consensus 261 ~~~~~~~r~psw~DRIly~~~~~~~~~~~~y~~~----~~~~~SDH~PV~a~f~v~v~~ 315 (316) T 3nr8_B 261 KPTGVRTNVPSWCDRILWKSYPETHIICNSYGCT----DDIVTSDHSPVFGTFEVGVTS 315 (316) T ss_dssp CTTCCBCCCCBCCEEEEEECCTTSCEEEEEEEEC----SSCCSSSSCCEEEEEEEECCC T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEC----CCCCCCCCHHHEEEEEEEEEC T ss_conf 5774445575346359998996666368899886----899788775338999999716 No 23 >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Probab=98.78 E-value=6.8e-09 Score=66.56 Aligned_cols=98 Identities=15% Similarity=0.023 Sum_probs=45.4 Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCH----------------HHHHCCCCCCCH-HHCCCCC-CCCCC-CCCCCCCCCCCC Q ss_conf 1169988999614777688310027----------------876326554100-0025767-68710-388755433355 Q gi|254780995|r 17 IKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLI-RFPQEKE-STCNV-IKRNKSSLDYFV 77 (125) Q Consensus 17 ~~~~~pvIi~GDFN~~~~~~~~~~~----------------~~~~l~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~d~~~ 77 (125) .....++|++||||..++....... ....+.....+. +.+.... ..+++ ..+...+. .. T Consensus 196 ~~~~d~v~~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~dql~~~~~~~~~f~~~~E~~i~F~Ptyk~~~~~~~y~--~~ 273 (347) T 1i9z_A 196 IFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYD--TS 273 (347) T ss_dssp TTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBC--CS T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC T ss_conf 4577536874364411014516668876516657899875877654124424687428878899983618998667--88 Q ss_pred CCCHH----HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 21012----100257321154302474112586788756499999616 Q gi|254780995|r 78 IDRDN----KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121 (125) Q Consensus 78 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~ 121 (125) .+.|+ |.++..+......|... ..+.|||+||++.|+++ T Consensus 274 ~~~RiPswcDRIL~~~~~~~~~Y~s~-----~~~~SDH~PV~a~f~~~ 316 (347) T 1i9z_A 274 DKHRVPAWTDRILYRGELVPHSYQSV-----PLYYSDHRPIYATYEAN 316 (347) T ss_dssp TTCCCCBCCEEEEEESSCEEEEEEEC-----CCCSSSBCCEEEEEEEE T ss_pred CCEECCCCCCEEEEECCCEEEEEECC-----CCCCCCCCCEEEEEEEE T ss_conf 98367255787985087226576036-----77778854689999999 No 24 >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Probab=98.63 E-value=7.6e-08 Score=60.95 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=48.8 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-----------CHHHHHC---CCCCCCHHHCCCCCCCCCCCCCCCC Q ss_conf 9999999998511699889996147776883100-----------2787632---6554100002576768710388755 Q gi|254780995|r 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------DDFWQKM---DPDGLLIRFPQEKESTCNVIKRNKS 71 (125) Q Consensus 6 ~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~-----------~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125) .+.+...+.. ..+.++||+||||.....-... +.....+ ................++...+... T Consensus 107 ~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~Tf~~~~~~~ 184 (240) T 2ei9_A 107 LHRLGNILDR--LRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGES 184 (240) T ss_dssp HHHHHHHHHH--TTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHTTCEECCCTTCCCSEEETTEEE T ss_pred HHHHHHHHHH--CCCCCEEEECHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCEECCCCCCCC T ss_conf 9999999986--69996698301104560004654344455554423355688765315517731578820166899887 Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 433355210121002573211543024741125867887564999996164 Q gi|254780995|r 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125) Q Consensus 72 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125) .+|+ ++++..+.+..+.+.. ...|||+||++++.... T Consensus 185 ~ID~---------~~~s~~~~~~~~~v~~-----~~~SDH~~I~~~l~~~~ 221 (240) T 2ei9_A 185 YVDV---------TLSTRGVRVSEWRVTN-----ESSSDHRLIVFGVGGGT 221 (240) T ss_dssp CCEE---------EEECTTCCEEEEEECS-----CCSSSBCCEEEEEEC-- T ss_pred EECE---------EEECCCEEEEEEEECC-----CCCCCCHHEEEEEECCC T ss_conf 8464---------9807970166589668-----99999545699997787 No 25 >2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Probab=98.55 E-value=1.2e-07 Score=59.98 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.4 Q ss_pred CCCCCCCCCCEEEEEECC Q ss_conf 586788756499999616 Q gi|254780995|r 104 RRSKLSTHCPLTIEYDFE 121 (125) Q Consensus 104 ~~~~~SDH~PV~~~l~f~ 121 (125) .....|||+||++.|+++ T Consensus 304 ~~~~~SDH~PV~a~F~v~ 321 (357) T 2xsw_A 304 PGIKTSDHRPVYGLFRVK 321 (357) T ss_dssp TTCCSSSSCCEEEEEEEE T ss_pred CCCCCCCCCCEEEEEEEE T ss_conf 887888980168899999 No 26 >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Probab=98.51 E-value=2.9e-07 Score=57.87 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=23.2 Q ss_pred HHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 12100257321--1543024741125867887564999996164 Q gi|254780995|r 81 DNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125) Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125) |||++++++.+ ++..+.+. ....+|||+||+++|+|.+ T Consensus 219 RIDyIl~s~~l~~~~~~~~v~----~~~~~SDH~Pv~~d~~~~~ 258 (259) T 2jc5_A 219 RIDYQMVTPELAAKAVSAHVY----KDEKFSDHAPLVVEYDYAA 258 (259) T ss_dssp CCEEEEECHHHHTTEEEEEEC----CSSCCSSBCCEEEEESCCC T ss_pred EEEEEEECHHHHHHCEEEEEC----CCCCCCCCEEEEEEEECCC T ss_conf 658999671896223499999----9999988300999996789 No 27 >1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1 Probab=34.86 E-value=23 Score=15.58 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 7899999999999851169988999614777 Q gi|254780995|r 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRK 32 (125) Q Consensus 2 l~~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~ 32 (125) +++..+.+.+.+.+-.+.+.|++|.||=... T Consensus 100 ~~~~~~~i~~~v~~i~~~~~pivLGGdHsis 130 (336) T 1xfk_A 100 LEQAQQECAQVIQQALPHARAIVLGGGHEIA 130 (336) T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECSSTTHH T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCC T ss_conf 9999999999999996489818978765330 No 28 >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Probab=20.82 E-value=31 Score=14.91 Aligned_cols=16 Identities=13% Similarity=-0.386 Sum_probs=12.5 Q ss_pred CCCCEEEEEECCCCCC Q ss_conf 6998899961477768 Q gi|254780995|r 19 TGIPFVIAGDFNRKIN 34 (125) Q Consensus 19 ~~~pvIi~GDFN~~~~ 34 (125) .+..|.|+|+||.+-. T Consensus 180 ~~~~V~v~G~fn~W~~ 195 (294) T 3nme_A 180 GFSRVEISGLDIGWGQ 195 (294) T ss_dssp SCSCEEEEETTTEEEE T ss_pred CCCEEEEEEEECCCCC T ss_conf 9989999847489899 Done!