HHSEARCH alignment of GI: 254780995 and SCOP domain: d1akoa_

Alignment
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=98.78  E-value=7.1e-09  Score=65.19  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=53.6

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCH---------------------HHHHCCCCCCC---HHHCCCCC-CCCC
Q ss_conf             99999851169988999614777688310027---------------------87632655410---00025767-6871
Q gi|254780995|r   10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKMDPDGLL---IRFPQEKE-STCN   64 (125)
Q Consensus        10 ~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~---------------------~~~~l~~~~~~---~~~~~~~~-~~~~   64 (125)
                      ...+........+.+++|++|..+...+....                     ....+...+..   ........ ..++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  212 (268)
T d1akoa_         133 QNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSW  212 (268)
T ss_dssp             HHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSB
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
T ss_conf             99999876238867887401137635444322312410002466678989999999997088733010117876665413


Q ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             038875543335521012100257321--1543024741125867887564999996
Q gi|254780995|r   65 VIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        65 ~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~  119 (125)
                      +.......  ....+.|||++++++++  ++....+........++|||+||+++|.
T Consensus       213 ~~~~~~~~--~~~~g~RIDyI~~s~~l~~~~~~~~i~~~~~~~~~~SDH~PV~a~~~  267 (268)
T d1akoa_         213 FDYRSKGF--DDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             CCTTTTHH--HHTCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred             CCCCCCCC--CCCCCCEEEEEEECHHHHHHHEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf             57766653--17996177899967289543149999421028999997225799997


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]