HHSEARCH alignment of GI: 254780995 and SCOP domain: d1hd7a_

Alignment
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.08  E-value=1.5e-10  Score=74.13  Aligned_cols=106  Identities=15%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH----------------HHHCCCCCC---CH-HHCCCCCCCCCCCCC
Q ss_conf             9999998511699889996147776883100278----------------763265541---00-002576768710388
Q gi|254780995|r    9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGL---LI-RFPQEKESTCNVIKR   68 (125)
Q Consensus         9 L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~----------------~~~l~~~~~---~~-~~~~~~~~~~~~~~~   68 (125)
                      +..........+.+++++||||..+......+..                .+.+...+.   ++ ..+.....+++|..+
T Consensus       148 ~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~D~~r~~~p~~~~~~t~~~~~  227 (275)
T d1hd7a_         148 AFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM  227 (275)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSG
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEECCCC
T ss_conf             20000100124775376112245723344045101210222222110456655403676532024037768730232334


Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             75543335521012100257321--15430247411258678875649999961
Q gi|254780995|r   69 NKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYDF  120 (125)
Q Consensus        69 ~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  120 (125)
                      ......  ..+.|||++++++++  ++..+.+.    ...++|||+||+++|++
T Consensus       228 ~~~~~~--~~g~RIDyi~vs~~l~~~v~~~~i~----~~~~~SDH~PV~v~l~l  275 (275)
T d1hd7a_         228 MNARSK--NVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL  275 (275)
T ss_dssp             GGHHHH--TCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC
T ss_pred             CCCCCC--CCCEEEEEEEECHHHHHHEEEEEEC----CCCCCCCCCCEEEEEEC
T ss_conf             786418--9976757999671886125589987----89999980057999979


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]