HHSEARCH alignment of GI: 254780995 and SCOP domain: d1vyba_

Alignment
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.99  E-value=7.7e-10  Score=70.35  Aligned_cols=90  Identities=14%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCC---------HHHHHCCCCCC---CHHHCCCCCCCCCCCCCCC--CCCCCCCCCCHHH
Q ss_conf             16998899961477768831002---------78763265541---0000257676871038875--5433355210121
Q gi|254780995|r   18 KTGIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGL---LIRFPQEKESTCNVIKRNK--SSLDYFVIDRDNK   83 (125)
Q Consensus        18 ~~~~pvIi~GDFN~~~~~~~~~~---------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~   83 (125)
                      ..+.|+|++||||......+...         .....+...+.   ++.........+++.....  .++||++++..+.
T Consensus       133 ~~~~~~Il~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~RiD~il~s~~~~  212 (236)
T d1vyba_         133 DLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALL  212 (236)
T ss_dssp             TCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTEEECCEEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECHHHH
T ss_conf             44320699630255543344135421103578899999864123321100147864333278899776367999871897


Q ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             002573211543024741125867887564999996
Q gi|254780995|r   84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD  119 (125)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  119 (125)
                      .       ++....+.     ...+|||+||+++|.
T Consensus       213 ~-------~~~~~~i~-----~~~~SDH~pv~~~lk  236 (236)
T d1vyba_         213 S-------KCKRTEII-----TNYLSDHSAIKLELR  236 (236)
T ss_dssp             G-------GEEEEEEE-----CCSSSSSCEEEEEEC
T ss_pred             H-------HCEEEEEC-----CCCCCCCCCEEEEEC
T ss_conf             2-------24089989-----997998101899959


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of LINE-1 reverse transcriptase homolog
species: Human (Homo sapiens) [TaxId: 9606]