HHSEARCH alignment of GI: 254780995 and SCOP domain: d1wdua_

Alignment
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=98.88  E-value=2e-09  Score=68.19  Aligned_cols=94  Identities=16%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             CCCCCEEEEEECCCCCCCCCC--CC----HHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             169988999614777688310--02----787632655410000257676871038875543335521012100257321
Q gi|254780995|r   18 KTGIPFVIAGDFNRKINSIGD--TD----DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF   91 (125)
Q Consensus        18 ~~~~pvIi~GDFN~~~~~~~~--~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   91 (125)
                      ....|+|||||||.....-..  ..    .+...+...+....  ......+++..+....     ...+||++++++.+
T Consensus       127 ~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~rID~~~~s~~l  199 (228)
T d1wdua_         127 MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHIL--NEGDVPTFDTIRGGKR-----YQSRVDVTFCTEDM  199 (228)
T ss_dssp             TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEEC--CCSCCCSEEC-----C-----CEECCEEEEECGGG
T ss_pred             CCCCEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCC-----CCCCEEEEEECCHH
T ss_conf             5895399922535575667324320578999999986075311--2577322003567878-----88544899978058


Q ss_pred             --EEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             --1543024741125867887564999996164
Q gi|254780995|r   92 --SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK  122 (125)
Q Consensus        92 --~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~  122 (125)
                        ++..+.+.    .+...|||.||+++|++++
T Consensus       200 ~~~v~~~~v~----~~~~~SDH~~v~~~l~~~~  228 (228)
T d1wdua_         200 LDLIDGWRVD----EDLVSSDHNGMVFNIRLQK  228 (228)
T ss_dssp             BTTEEEEEEC----TTSSSSSBCCEEEEECCCC
T ss_pred             HHHCEEEEEC----CCCCCCCCHHEEEEEEEEC
T ss_conf             6213599998----9999999357699999719


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of TRAS1 retrotransposon (ORF2)
species: Silkworm (Bombyx mori) [TaxId: 7091]