BLAST/PSIBLAST alignment of GI: 254780995 and GI: 54309887 at iteration 1
>gi|54309887|ref|YP_130907.1| hypothetical protein PBPRA2733 [Photobacterium profundum SS9] Length = 319
>gi|46914326|emb|CAG21105.1| hypothetical protein PBPRA2733 [Photobacterium profundum SS9] Length = 319
 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 21/135 (15%)

Query: 2   LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD---PDGLLIRFPQE 58
           L++Q E L++W D++    +PF+I GDFNR++      D  WQ++D   P GL +    E
Sbjct: 190 LNRQFEVLEQWVDRRAAEPLPFMILGDFNRRLAL--HNDKIWQQLDDGRPTGLSLYAATE 247

Query: 59  -KESTCNV-----------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
            ++S C +           I+   + +D+ V+D   K  +I+NSF   +   +D++  ++
Sbjct: 248 GQKSQCRIKIHSKRKKHGQIRHYPNFIDHIVLDGRAKLKMINNSFRETT---TDVEVVKA 304

Query: 107 -KLSTHCPLTIEYDF 120
             LS HCP+ +  + 
Sbjct: 305 FNLSDHCPIALSLNL 319